BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780127|ref|YP_003064540.1| putative DNA polymerase from
bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62]
         (675 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score = 1398 bits (3619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/675 (100%), Positives = 675/675 (100%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 1396 bits (3613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/675 (99%), Positives = 674/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 1395 bits (3612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/675 (99%), Positives = 673/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE VS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSETVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 1395 bits (3611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/675 (99%), Positives = 673/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 1394 bits (3607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/675 (99%), Positives = 672/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD PYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 1393 bits (3606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/675 (99%), Positives = 672/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
            PLKAEGYEAKRYRK
Sbjct: 661 FPLKAEGYEAKRYRK 675


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/675 (73%), Positives = 564/675 (83%), Gaps = 2/675 (0%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T    MPSDLL++
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            LTKMEEGKALIARFCKGSI+  PYD  RANHVQAWQLFGEYCKRDVEATREL+KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER+KLDE++  LT G+I SSR+T  
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  YLFL  G+DL DM+E T+ + LS  NITQ AKD++ NRL+SS SAILKLNTLS AVS
Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKDILNNRLSSSQSAILKLNTLSGAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            D RLRGTLQFYGASRTGRWSGCVFQPQNLPR   S E + + I++ N      DPL  A
Sbjct: 301 PDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSNFPSD--DPLRFA 358

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIAS GKKLVVADLAGIEARVLAWIAGE WK+ AFANGEDIY T Y+KAFN P
Sbjct: 359 SDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIP 418

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +  V+K+QRAIGKVMELALGYQGGA+VF+TMAS+ GLDL+QFS+++K T+T +DWEQA+ 
Sbjct: 419 LSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQAQR 478

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             LWMQ+ YPEFAV D  IGTACELVK AWRAKH+GV+QLWKD  E F CV+++G SISA
Sbjct: 479 RCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 538

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVA VP L+M++  ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN
Sbjct: 539 RRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 598

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDIL  GM NAT+ GYDIVLTVHDEIV ETPDTP FS   LC LMT+NP WAKG
Sbjct: 599 IVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWAKG 658

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEA RYRK
Sbjct: 659 LPLKAEGYEALRYRK 673


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/675 (72%), Positives = 567/675 (84%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T    MPSDLL++
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            LTKMEEGKALIARFCKGSI+  PYD  RANHVQAWQLFGEYCKRDVEATREL+KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER++LDE+  +LT G+I S+R+T  
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  YLFL TG+DL DM+E T+ + LS  +I QL+K ++ NRL+SS SAILKLNTLS AVS
Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPDIPQLSKAILNNRLSSSQSAILKLNTLSGAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            D RLRGTLQF+GASRTGRWSGCVFQPQNLPRQ  + + + + I+ L+ G  I DPL  A
Sbjct: 301 PDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIAS GKKL+VADLAGIEARVLAW+AGE WK+ AFANGEDIY T Y+KAFN P
Sbjct: 361 SDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +  V+K+QRAIGKVMELALGYQGGA+VF+ MAS  GL+LQQFS+++K+T+T EDWEQA+ 
Sbjct: 421 LSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQAQR 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             LWMQ+ +PEFAV D  IGTACELVK+AWRAKH+GV+QLWKD  E F CV+++G SISA
Sbjct: 481 RCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRV  VP L+M++  ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN
Sbjct: 541 RRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDIL  GM NATK GYDIVLTVHDEIV E PDTP FS   LCSLMT+NP+WAKG
Sbjct: 601 IVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEA RYRK
Sbjct: 661 LPLKAEGYEAVRYRK 675


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658

Query: 659 KGLPLKAEGYEAKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYESKRYRK 675


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 273/688 (39%), Positives = 380/688 (55%), Gaps = 24/688 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L++D+ET S +P+ K G  +YAE   I L A+A ++  V++WD T++S +P++L Q L D
Sbjct: 5   LWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQALSD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
              +  AHNS F+R +   + GI I   RW  T V A  +GLP +L   C  L       
Sbjct: 64  PNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVPLDKA 122

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS- 181
           K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL   + 
Sbjct: 123 KDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLPSWNY 182

Query: 182 -DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E + W  DQ INDRG  +D+ L     E +  E+K+L +    LTD  ++++ Q  A
Sbjct: 183 CDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAATQRDA 242

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  ++    G+DL DM + TL+  ++  +I    ++L+  RL SS ++  K   L   VS
Sbjct: 243 LLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLRELLAIRLQSSTTSTSKYKALMNGVS 302

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-L 357
           SDGRLRGTLQF GASRTGRW+G +FQPQNLPR    +  + + I+AL  G  + I D  +
Sbjct: 303 SDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIYDDIM 362

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTT 412
            L S  +R CI+A  GKKLVV+DL+ IE R+LAW+AGE WKI AF+      G D+Y   
Sbjct: 363 QLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADLYKLA 422

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           YA+AFN   + V K  R IGKVMEL LGY GG   F T A    LDL + ++        
Sbjct: 423 YARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALPNIPP 482

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
           +    A S +    +    + + + +  T C+ +K+ WR  H   +  W +L +     +
Sbjct: 483 KVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDTVRHAI 541

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTATSQL 587
              G     R     +L +RR K  + IVLPS R + Y   + D    SY+  N  + + 
Sbjct: 542 SSPGITFPCR-----KLKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNPYSRKW 596

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            R +TYGGKL EN+ QA +RD+L   M     +GYDIVLTVHDE+++E PD P F+   L
Sbjct: 597 QRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAFNHEHL 656

Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L+  NP WA  LPL A G+EA  YRK
Sbjct: 657 SELLATNPEWALDLPLSAGGFEAYHYRK 684


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/689 (38%), Positives = 373/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPHLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +         F + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYNESVKHKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703]
          Length = 699

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/707 (37%), Positives = 381/707 (53%), Gaps = 46/707 (6%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           KL+ D ET    P+ K G  AYAE   + +  YA +D+PV  WD T  + MP DL  YL+
Sbjct: 4   KLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYLQ 62

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPS------KRWICTSVLARTNGLPSSLKNACLAL 116
           D ++   A NS F+R + +     D+PS      +RW  T V A  +GLP  L   C  L
Sbjct: 63  DPSIEIYAQNSHFDRTMMRH----DMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEIL 118

Query: 117 NFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             ++   K +EGKALI  FCK  + +S  +  T   H + W+ F +Y   D+EA R + K
Sbjct: 119 GITQDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDK 178

Query: 176 RLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +L P+      E  LW  DQ INDRG ++D  L       +  E+K L +    LTD  +
Sbjct: 179 KL-PVWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEV 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           +++ Q  AL  ++    G+DL DM + TL+  ++   +  + ++L+  RL +S ++  K 
Sbjct: 238 QAATQRDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLRELLAIRLQASTTSTSKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +   I+AL  G  
Sbjct: 298 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCA 357

Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN----- 404
                + + L S  +R CI+A  GKKLVV+DL+ IE RVLAW+AGE+WK++AF +     
Sbjct: 358 DLLFDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTII 417

Query: 405 -----------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                      G D+Y   YA+AFN   D V+K QR IGKVMEL LG+ GG   F T A 
Sbjct: 418 GYDEGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFAL 477

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             GLDL + +             +A+S +     Q   F + +++   AC+ +K+ WR  
Sbjct: 478 VYGLDLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVF-IACDSLKRMWRNA 536

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H   +  W ++       +     I+ ++     +L +RR    + I LPS R + Y  +
Sbjct: 537 HPETVSFWSEIENTVRRAI-----INPKQTFVCRKLKIRRDGSWLRIQLPSGRSVCYPGI 591

Query: 574 K--GD-CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +  GD  SY+  NT + +  R +TYGGKL EN  QA +RD++   M      GY+I LTV
Sbjct: 592 RIEGDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTV 651

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE+++E PDT  F+   L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 652 HDEVLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/689 (38%), Positives = 374/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +DEPV +WD T    +P  L + +  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   F + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYNESVKRKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 281/695 (40%), Positives = 372/695 (53%), Gaps = 28/695 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MS LF+D+ET    P+ + G  AYAE+A + L AYA D+ PV +WD      MP DL   
Sbjct: 1   MSTLFLDLETYCEVPI-QNGTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNF 118
           L DE V   AHNS F+R + +  +  D P    RW  T V A  + LP +L + C  L  
Sbjct: 60  LIDENVALCAHNSHFDRTVLRHAMP-DYPLALPRWRDTMVKALAHSLPGALGDLCDILKV 118

Query: 119 SEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                K + GK LI  FCK     S     TR  H   W  F EY   D+EA R + ++L
Sbjct: 119 PTDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKL 178

Query: 178 IPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
              +    E  LW LDQTINDRG  +D DL       + + +K L      +T G ++++
Sbjct: 179 PAWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAA 238

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
            Q  A+  ++    G+DL DM + TL+  ++  ++    ++L+  RL +S ++  K  TL
Sbjct: 239 TQRDAMLRHVLAAYGLDLPDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTL 298

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET--- 352
           ++ VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    ++ + + I AL        
Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGED 407
            A+ + L S  +R CI+A  GKKLVVADL+ IE R++AW+AGEDWK+ AF       G D
Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +Y   YAKAF    D V K+QR IGKVMEL LGY+GG   F T A+  G+DL   +    
Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478

Query: 468 STSTFEDWEQAESHHLWMQDQ-YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
            +   +   +AE    W  +Q   +F +K K     C+ +K+ WR  H  V   WK+L E
Sbjct: 479 PSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTF-VVCDALKRLWRRAHPAVSSFWKELEE 537

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYL-- 580
                V   G+    R      L  RR    + I LPS R L Y     D  G  SY+  
Sbjct: 538 AARLAVLRPGTTYDCRT-----LKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGV 592

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
           N  + +  R +TYGGKL EN+ QA SRD+L   M      GY IVL+VHDE ++E  D  
Sbjct: 593 NQYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRD 652

Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            FS   L  LM  NP WA GLPL A G+EA RYRK
Sbjct: 653 EFSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKK+VV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYGESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/689 (37%), Positives = 375/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL ENI QA +RDIL   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/689 (37%), Positives = 375/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL ENI QA +RDIL   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/689 (37%), Positives = 377/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G  + + D  
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL ENI QA +RDIL   M      GY IVLTVH+E+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/689 (37%), Positives = 377/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL   +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     C 
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELE----CT 538

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           V+   + + ++      L +RR    + I LPS R + Y      +G+ +Y+  N+ + +
Sbjct: 539 VRTAIA-TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/689 (37%), Positives = 377/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP +L   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL   +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     C 
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELE----CT 538

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           V+   + + ++      L +RR    + I LPS R + Y      +G+ +Y+  N+ + +
Sbjct: 539 VRTAIA-TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
          Length = 693

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/696 (37%), Positives = 377/696 (54%), Gaps = 32/696 (4%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L++D+ET S  P+ + G  AYA  A I L A+A DD PV + + TE   +P  L   LRD
Sbjct: 5   LWLDLETYSETPI-RNGTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63

Query: 64  ETVMCVAHNSLFERILFKKTL-GIDIPS------KRWICTSVLARTNGLPSSLKNACLAL 116
              +  AHNS F+R + +  L     P+       RW  T V A  +GLP SL + C  L
Sbjct: 64  GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123

Query: 117 NFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             ++   K + GKALI  FCK  + +S     T+  H + W+ F +Y   D+EA RE+ K
Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183

Query: 176 RLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +L P+      E  LW  DQ INDRG ++D  L       +  E+K+L      LTD  +
Sbjct: 184 KL-PVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           +++ Q   L  ++    G+ L DM   T++  +S  ++    ++L+  RL +S ++  K 
Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSDPDLPIELRELLAIRLQASTTSTSKY 302

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +   I+AL  G  
Sbjct: 303 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCA 362

Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----AN 404
                + + L S  +R CI+A  GKKLVV+DL+ IE R L W++GE+WK++AF       
Sbjct: 363 DLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGT 422

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D+Y+  YA+AFN   D V K QR IGKVMEL LG+ GG   F T A   GLDL   ++
Sbjct: 423 GHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAK 482

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                       +A+S +     Q   + + +++   AC+ +K+ WR  H   +  W ++
Sbjct: 483 AALPNVPASIQREAQSWYKASVKQKRTYGLSEQVF-IACDSLKRMWRNAHPKTVSFWYEI 541

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL- 580
            +     +      + R+     +L +RR    + I LPS R + Y  ++   G  SY+ 
Sbjct: 542 EDTVRRAIA-----APRQTFTCRKLKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMG 596

Query: 581 -NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
            N+ + +  R +TYGGKLTEN+ QA +RD++   M     +GY+I LTVHDE+++E PDT
Sbjct: 597 INSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDT 656

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             F+   L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 657 EQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692


>gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 669

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 366/678 (53%), Gaps = 45/678 (6%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS- 90
           +  YA +D+PV  WD T  + MP DL  YL+D ++   A NS F+R + +     D+PS 
Sbjct: 2   IITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRH----DMPSV 57

Query: 91  -----KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPP 144
                +RW  T V A  +GLP  L   C  L  ++   K +EGKALI  FCK  + +S  
Sbjct: 58  IAGGIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTI 117

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---SDGERDLWLLDQTINDRGYRI 201
           +  T   H + W+ F +Y   D+EA R + K+L P+      E  LW  DQ INDRG ++
Sbjct: 118 HRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKL-PVWNYQGKELALWHFDQLINDRGVQM 176

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D  L       +  E+K L +    LTD  ++++ Q  AL  ++    G+DL DM + TL
Sbjct: 177 DTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTL 236

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
           +  ++   +  + ++L+  RL +S ++  K  TL + VS DGRLRGTLQF GASRTGRW+
Sbjct: 237 ERRIADPELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWA 296

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVV 378
           G +FQPQNLPR    +E +   I+AL  G       + + L S  +R CI+A  GKKLVV
Sbjct: 297 GRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVV 356

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFAN----------------GEDIYVTTYAKAFNTPID 422
           +DL+ IE RVLAW+AGE+WK++AF +                G D+Y   YA+AFN   D
Sbjct: 357 SDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPD 416

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
            V+K QR IGKVMEL LG+ GG   F T A   GLDL + +             +A+S +
Sbjct: 417 DVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWY 476

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                Q   F + +++   AC+ +K+ WR  H   +  W ++       +     I+ ++
Sbjct: 477 QASVKQKRTFGLSEQVF-IACDSLKRMWRNAHPETVSFWSEIENTVRRAI-----INPKQ 530

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--GD-CSYL--NTATSQLMRERTYGGKL 597
                +L +RR    + I LPS R + Y  ++  GD  SY+  NT + +  R +TYGGKL
Sbjct: 531 TFVCRKLKIRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKL 590

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            EN  QA +RD++   M      GY+I LTVHDE+++E PDT  F+   L  L+  NP W
Sbjct: 591 AENATQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEW 650

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+EA  YRK
Sbjct: 651 ALDLPLSAGGFEAYHYRK 668


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/736 (37%), Positives = 374/736 (50%), Gaps = 85/736 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAE A + L AYA  + PV++WD T  + +P DL   L D
Sbjct: 11  LWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F EY +RDV A R++ KRL 
Sbjct: 129 KDKDGKRLVALFCKPR----PAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  ID DLV      + + ++ L +    LT G ++++ 
Sbjct: 185 SHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T+   +    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E++   I A+  G      
Sbjct: 305 HCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF           
Sbjct: 365 DDVMALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDG 424

Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      VSKEQR IGK
Sbjct: 425 TWHTGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486
           V ELALGY GG   F   A+   +DL+  +         ++  +   +W +A        
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQQATELLEWTKA-------- 536

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +  P F + D+    AC++ K+AWR  H  +   W+ L   FA       +I     A+ 
Sbjct: 537 NHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAVT----DAIHHPETAHT 589

Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTE 599
              +  +++R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL E
Sbjct: 590 CCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVE 649

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           NI QA+SRD+L   M      GY IVLTVHDEI++E  D P F+   L +LM   P WA+
Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAE 709

Query: 660 GLPLKAEGYEAKRYRK 675
           GLPL AEG++  RYRK
Sbjct: 710 GLPLAAEGFDTYRYRK 725


>gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 271/735 (36%), Positives = 368/735 (50%), Gaps = 83/735 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAE A + L AYA  + PV++WD T  + +P DL   L D
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F EY +RDV A R++ KRL 
Sbjct: 129 KDKDGKRLVALFCKPR----PAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  ID DLV      + + ++ L +    LT G ++++ 
Sbjct: 185 SHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T+   +    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR---GETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E++   I A+         
Sbjct: 305 HCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF           
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDG 424

Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      VSKEQR IGK
Sbjct: 425 CWHTGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486
           V ELALGY GG   F   A+   +DL+  +         ++  +   +W +A        
Sbjct: 485 VQELALGYGGGVGAFAAFAALYHIDLEAMAAQAVFPPLLLQEATELLEWTKA-------- 536

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +  P F + D+    AC++ K+AWR  H  +   W+ L       +    +         
Sbjct: 537 NHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTH-----TC 590

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTEN 600
             + ++  +  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL EN
Sbjct: 591 CGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVEN 650

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           I QA+SRD+L   M      GY IVLTVHDEI++E  D P F+   L +LM   P WA+G
Sbjct: 651 ITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEG 710

Query: 661 LPLKAEGYEAKRYRK 675
           LPL AEG++  RYRK
Sbjct: 711 LPLAAEGFDTYRYRK 725


>gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/728 (37%), Positives = 370/728 (50%), Gaps = 69/728 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F EY +RDV A R++ KRL 
Sbjct: 129 KAKDGKRLVALFCKPR----PAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ 
Sbjct: 185 SHNYTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G      
Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF +         
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDG 424

Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      V+KEQR IGK
Sbjct: 425 TWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           V ELALGY GG   F   A+   +DL+  ++           E  E+      +Q P F 
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFG 543

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           + D+    AC++ K+AWR  H  +   WK L   FA         +A     +    M+ 
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAATDAIRHPETAHTCCGI---TMQY 597

Query: 554 HKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISR 607
            +  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+SR
Sbjct: 598 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667
           D+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YEAKRYRK 675
           ++  RYRK
Sbjct: 718 FQTHRYRK 725


>gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
 gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 726

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/736 (37%), Positives = 374/736 (50%), Gaps = 85/736 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F EY +RDV A R++ KRL 
Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ 
Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G      
Sbjct: 305 NCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA---------- 403
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF           
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDG 424

Query: 404 ------------------------------NGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      V+K+QR IGK
Sbjct: 425 TWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486
           V ELALGY GG   F   A+   +DL+  +         ++  +   +W +A        
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWTKA-------- 536

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +  P F + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+ 
Sbjct: 537 NHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 589

Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599
              +  ++ R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL E
Sbjct: 590 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVE 649

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           NI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+
Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 709

Query: 660 GLPLKAEGYEAKRYRK 675
           GLPL AEG+E  RYRK
Sbjct: 710 GLPLAAEGFETHRYRK 725


>gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/736 (37%), Positives = 376/736 (51%), Gaps = 85/736 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F +Y +RDV A R++ KRL 
Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ 
Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G      
Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF +         
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDG 424

Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      V+K+QR IGK
Sbjct: 425 TWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486
           V ELALGY GG   F   A+   +DL+  +         ++  +   +W +A        
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWTKA-------- 536

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +  P F + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+ 
Sbjct: 537 NHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 589

Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTE 599
              +  ++ R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL E
Sbjct: 590 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVE 649

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           NI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+
Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 709

Query: 660 GLPLKAEGYEAKRYRK 675
           GLPL AEG+E  RYRK
Sbjct: 710 GLPLAAEGFETHRYRK 725


>gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53]
 gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53]
          Length = 726

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/736 (37%), Positives = 373/736 (50%), Gaps = 85/736 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA    PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F EY +RDV A R++ KRL 
Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ 
Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G      
Sbjct: 305 NCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA---------- 403
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF           
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDG 424

Query: 404 ------------------------------NGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      V+K+QR IGK
Sbjct: 425 TWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486
           V ELALGY GG   F   A+   +DL+  +         ++  +   +W +A        
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWTKA-------- 536

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +  P F + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+ 
Sbjct: 537 NHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 589

Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599
              +  ++ R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL E
Sbjct: 590 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVE 649

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           NI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+
Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 709

Query: 660 GLPLKAEGYEAKRYRK 675
           GLPL AEG+E  RYRK
Sbjct: 710 GLPLAAEGFETHRYRK 725


>gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 274/729 (37%), Positives = 372/729 (51%), Gaps = 71/729 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA   L AYA  D PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F +Y +RDV A R++ KRL 
Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ 
Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G      
Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K++AF +         
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDG 424

Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          GEDIY   YA +F      V+K+QR IGK
Sbjct: 425 TWHSGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           V ELALGY GG   F   A+   +DL+  ++           E  E+      +  P F 
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANHRPTFG 543

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+    +  +
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHTCCGITVQ 596

Query: 554 HKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAIS 606
           + R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+S
Sbjct: 597 YSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVS 656

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AE
Sbjct: 657 RDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAE 716

Query: 667 GYEAKRYRK 675
           G+E  RYRK
Sbjct: 717 GFETHRYRK 725


>gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 274/730 (37%), Positives = 374/730 (51%), Gaps = 73/730 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F +Y +RDV A R++ KRL 
Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ 
Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G + QP NLPR   S+ ++   I A+  G      
Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF +         
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDG 424

Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      V+K+QR IGK
Sbjct: 425 TWHSGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ-DQYPEF 492
           V ELALGY GG   F   A+   +DL+  ++           +QA     W + +Q P F
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLL--LQQAMEALQWTKANQRPTF 542

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
            + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+    +  
Sbjct: 543 GLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHTCCGITV 595

Query: 553 RHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAI 605
           ++ R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+
Sbjct: 596 QYSRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAV 655

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665
           SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL A
Sbjct: 656 SRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAA 715

Query: 666 EGYEAKRYRK 675
           EG+E  RYRK
Sbjct: 716 EGFETHRYRK 725


>gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated
           bacterium]
          Length = 206

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/206 (91%), Positives = 194/206 (94%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY
Sbjct: 1   MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL
Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
           +  ER LWLLDQ INDRGYRIDLDLV
Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206


>gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 726

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 273/728 (37%), Positives = 368/728 (50%), Gaps = 69/728 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           K ++GK L+A FCK      P  CT     R  H   W  F EY +RDV A R++ KRL 
Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLP 184

Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               S  E  LW LDQTINDRG  +D DL       + + +  L      LT G ++++ 
Sbjct: 185 SHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAAT 244

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L 
Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353
              S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G      
Sbjct: 305 NCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVF 364

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404
            D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF +         
Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDG 424

Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
                                          G+DIY   YA +F      V+KEQR IGK
Sbjct: 425 TWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGK 484

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           V ELALGY GG   F   A+   +DL+  ++           E  E+      +Q P F 
Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFG 543

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           + D+    AC++ K+AWR  H  +   W+ L   FA     G   +A     +    ++ 
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGI---TVQY 597

Query: 554 HKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISR 607
            +  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+SR
Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667
           D+L   M      GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YEAKRYRK 675
           ++  RYRK
Sbjct: 718 FQTHRYRK 725


>gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening
           disease-associated, Peptide, 207 aa]
          Length = 207

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/206 (91%), Positives = 194/206 (94%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +SKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY
Sbjct: 2   VSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 61

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E
Sbjct: 62  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 121

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL
Sbjct: 122 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 181

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
           +  ER LWLLDQ INDRGYRIDLDLV
Sbjct: 182 NPEERTLWLLDQEINDRGYRIDLDLV 207


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 270/736 (36%), Positives = 367/736 (49%), Gaps = 69/736 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRT----------EQS 51
           LF+D ET S   L KVG +AYAE     I L +YA+DD P K+WD T          + +
Sbjct: 5   LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64

Query: 52  AMPSDLLQYLRDET---VMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           + P DLL+ LR      V  V HN L F+R++ ++ LG+DIP +    T V A  + LP 
Sbjct: 65  SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP---YDCTRANHVQAWQLFGEYCK 164
           SL   C  LN    L K + GKALI RFCK +  +     YD  R  H   W+ F  Y +
Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYD--RNTHPDEWKQFKHYAR 182

Query: 165 RDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            D+ A RE++ ++      D E ++  LDQ INDRG+ +D DL       +A  R +L E
Sbjct: 183 NDITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQE 242

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
                  G +  +     LR    L     + +  + TL  +L  +++   A+ +I  RL
Sbjct: 243 AAQATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPDEARQVIEMRL 299

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            ++ +A  K   L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R    E+ L +
Sbjct: 300 GAASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLAR 359

Query: 343 TIQALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
            I+AL RG  E   D + LA+  VR CII + GKKLVVAD + +E R LAW+AGED  + 
Sbjct: 360 GIEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALD 419

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            F  G DIY  T  K F    D V   +R IGK  EL LGY GG   F T + + GLDL+
Sbjct: 420 TFRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLE 479

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ----YPEFAVKD--------KLIGTACELVKK 508
           + +  +  T     W  A   + +M+ Q     P    KD        K     C+ +K+
Sbjct: 480 EMAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKR 539

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI---------SARRVANVPRLVMRRHKRD-- 557
            WR  H   +Q W DL E     +   G+            +R   + R + R  K    
Sbjct: 540 MWRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNW 599

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNT--------------ATSQLMR----ERTYGGKLTE 599
           + I LPS R L Y  +       N                 +QL R    + TYGGKL E
Sbjct: 600 LKIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAE 659

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           N+ QA+ RDIL   M      GY+I+L+VHDE+++ETPDT  ++V  L  LM   P+WAK
Sbjct: 660 NVTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAK 719

Query: 660 GLPLKAEGYEAKRYRK 675
           G PLKAEG+E  RY+K
Sbjct: 720 GFPLKAEGWEGYRYKK 735


>gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 712

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 264/719 (36%), Positives = 363/719 (50%), Gaps = 73/719 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L
Sbjct: 9   SILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAAL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L     
Sbjct: 68  HNPAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVE 126

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKR 176
             K ++GK L+A FCK      P  CT     R  H   W  F +Y +RDV A R++ KR
Sbjct: 127 QAKAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKR 182

Query: 177 LIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           L     +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G++++
Sbjct: 183 LPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQA 242

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           + Q  AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   
Sbjct: 243 ATQRDALLHHLSTEHGVVLPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQA 302

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---E 351
           L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G    
Sbjct: 303 LLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDV 362

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------- 404
              D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K++AF +       
Sbjct: 363 VFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGV 422

Query: 405 ---------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                                            G+DIY   YA +F      V+KEQR I
Sbjct: 423 DGTWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQI 482

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-P 490
           GKV ELALGY GG   F   A+   +DL+  ++           +QA     W +  + P
Sbjct: 483 GKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLL--LQQAVEALQWTKANHRP 540

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
            F + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+    +
Sbjct: 541 TFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHTCCGI 593

Query: 551 MRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQ 603
             ++ R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI Q
Sbjct: 594 TVQYSRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQ 653

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662
           A+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P   +G P
Sbjct: 654 AVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712


>gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407]
          Length = 598

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/589 (38%), Positives = 324/589 (55%), Gaps = 22/589 (3%)

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGE 161
            G   +L   C  L   +   K +EGKALI  FCK    +S     T   H + W+ F  
Sbjct: 15  GGSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVA 74

Query: 162 YCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           Y   D+EA RE++KRL        E  LW  DQ INDRG  +D++L     + + QE+K+
Sbjct: 75  YAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKR 134

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L +   ++TDG ++++ Q  AL  ++    G++L DM   TL+  ++  ++    K+L+ 
Sbjct: 135 LAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLA 194

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            RL +S ++  K   L + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E 
Sbjct: 195 IRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQ 254

Query: 340 LTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           + + I+AL  G       + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+
Sbjct: 255 IDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEE 314

Query: 397 WKIKAF-----ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           WK+ AF       G D+Y   YAKAF+   D V K  R IGKVMEL LGY GG   F T 
Sbjct: 315 WKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITF 374

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           A   GLDL   +         +   +A+S +     +   + + +++   AC+ +K+ WR
Sbjct: 375 ALVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWR 433

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             H      W +L     C V+   + + ++      L +RR    + I LPS R + Y 
Sbjct: 434 RAHPATCDFWYELE----CTVRTAIA-TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYP 488

Query: 572 DV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                +G+ +Y+  N+ + +  R +TYGGKL EN+ QA +RD+L   M      GY IVL
Sbjct: 489 SPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVL 548

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           TVHDE+++E+PDT  F+   L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 549 TVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597


>gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H]
          Length = 726

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 257/732 (35%), Positives = 356/732 (48%), Gaps = 63/732 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDEPV++WD T  S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169
           C  L  S    K + GKALI RF K +  +  Y   R     H   W LF +Y   D+ A
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKIRRYTAETHPDEWALFIKYAVSDITA 178

Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            RE+F +L    + E +  +  LDQ INDRG+++D+ L     E + + + +L E+  + 
Sbjct: 179 MREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRK 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G +        LR    L     + +  + TL  +L+  ++   A+ +I  RL ++ +
Sbjct: 239 YGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAAST 295

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           A  K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL
Sbjct: 296 ASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISAL 355

Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            +G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G
Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            DIY  T  K F    D + KE+   R IGK  EL LGY GG   F   A + GLDL   
Sbjct: 416 LDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDM 475

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQ-------------DQYPEFAVKDKLIGTACELVKKA 509
           ++ +  T     W      + W +             D  P + + DK +   C+ +K+ 
Sbjct: 476 TKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSY-ILDKKVWRTCDAIKRM 534

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKRD------VHIV 561
           WR  H   +  W+D+ +     ++  G    +  R     R V   +  +      + + 
Sbjct: 535 WRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMT 594

Query: 562 LPSSRRLVY----------SDVKGDCSY--------LNTATSQLMRERTYGGKLTENIVQ 603
           LPS R + Y          +D  G  S          N  T Q   + TY GKL EN  Q
Sbjct: 595 LPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQ 654

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663
           A+ RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL
Sbjct: 655 ALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPL 714

Query: 664 KAEGYEAKRYRK 675
            AEG E KRY K
Sbjct: 715 VAEGAEMKRYAK 726


>gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G]
          Length = 726

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 257/732 (35%), Positives = 356/732 (48%), Gaps = 63/732 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDEPV++WD T  S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169
           C  L  S    K + GKALI RF K +  +  Y   R     H   W LF +Y   D+ A
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKIRRYTAETHPDEWALFIKYAVSDITA 178

Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            RE+F +L    + E +  +  LDQ INDRG+++D+ L     E + + + +L E+  + 
Sbjct: 179 MREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRK 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G +        LR    L     + +  + TL  +L+  ++   A+ +I  RL ++ +
Sbjct: 239 YGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAAST 295

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           A  K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL
Sbjct: 296 ASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISAL 355

Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            +G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G
Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            DIY  T  K F    D + KE+   R IGK  EL LGY GG   F   A + GLDL   
Sbjct: 416 LDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDM 475

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQ-------------DQYPEFAVKDKLIGTACELVKKA 509
           ++ +  T     W      + W +             D  P + + DK +   C+ +K+ 
Sbjct: 476 AKTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSY-ILDKKVWRTCDAIKRM 534

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKRD------VHIV 561
           WR  H   +  W+D+ +     ++  G    +  R     R V   +  +      + + 
Sbjct: 535 WRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMT 594

Query: 562 LPSSRRLVY----------SDVKGDCSY--------LNTATSQLMRERTYGGKLTENIVQ 603
           LPS R + Y          +D  G  S          N  T Q   + TY GKL EN  Q
Sbjct: 595 LPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQ 654

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663
           A+ RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL
Sbjct: 655 ALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPL 714

Query: 664 KAEGYEAKRYRK 675
            AEG E KRY K
Sbjct: 715 VAEGAEMKRYAK 726


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 331/610 (54%), Gaps = 24/610 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  YL D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL--NTATSQ 586
           +Q  G     R     +L +RR K  + I LPS R L Y   +   G  +Y+  N  + +
Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597

Query: 587 LMRERTYGGK 596
             R +TYGGK
Sbjct: 598 WERLKTYGGK 607



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 51/77 (66%)

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  WA
Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975

Query: 659 KGLPLKAEGYEAKRYRK 675
             LPL A G+E  RYRK
Sbjct: 976 WDLPLSANGFETYRYRK 992


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 231/610 (37%), Positives = 331/610 (54%), Gaps = 24/610 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  Y  D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A S +    +    + + +K+    C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL--NTATSQ 586
           +Q  G     R     +L +RR K  + I LPS R L Y   +   G  +Y+  N  + +
Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597

Query: 587 LMRERTYGGK 596
             R +TYGGK
Sbjct: 598 WERLKTYGGK 607



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 51/77 (66%)

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  WA
Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975

Query: 659 KGLPLKAEGYEAKRYRK 675
             LPL A G+E  RYRK
Sbjct: 976 WDLPLSANGFETYRYRK 992


>gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3]
 gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2]
          Length = 726

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 256/732 (34%), Positives = 356/732 (48%), Gaps = 63/732 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDE V++WD T+ S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169
           C  L  S    K + GKALI RF K +  +  Y   R     H   W LF +Y   D+ A
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKIRRYTAETHPDEWALFIKYAVSDITA 178

Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            RE+F +L    + E +  +  LDQ INDRG+++D+ L     E + + + +L E+  + 
Sbjct: 179 MREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRK 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G +        LR    L     + +  + TL  +L+  ++   A+ +I  RL ++ +
Sbjct: 239 YGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAAST 295

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           A  K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL
Sbjct: 296 ASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISAL 355

Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            +G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G
Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            DIY  T  K F    D + KE+   R IGK  EL LGY GG   F   A + GLDL   
Sbjct: 416 LDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDM 475

Query: 463 SQNVKSTSTFEDWEQAESHHLWM-------------QDQYPEFAVKDKLIGTACELVKKA 509
           ++ +  T     W      + W              +D  P + + DK +   C+ +K+ 
Sbjct: 476 AKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSY-ILDKKVWRTCDAIKRM 534

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKRD------VHIV 561
           WR  H   +  W+D+ +     ++  G    +  R     R V   +  +      + + 
Sbjct: 535 WRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMT 594

Query: 562 LPSSRRLVY----------SDVKGDCSY--------LNTATSQLMRERTYGGKLTENIVQ 603
           LPS R + Y          +D  G  S          N  T Q   + TY GKL EN  Q
Sbjct: 595 LPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQ 654

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663
           A+ RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL
Sbjct: 655 ALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPL 714

Query: 664 KAEGYEAKRYRK 675
            AEG E KRY K
Sbjct: 715 VAEGAEMKRYAK 726


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 258/766 (33%), Positives = 367/766 (47%), Gaps = 97/766 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
             +LF+D ET S   L KVG +AYAE     I +C YA D+  V+ WD TE   MP +L 
Sbjct: 4   FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELR 63

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + LR     +  + +A+  LF+R++ ++  GID+P  +   T ++A  + LP SL   C 
Sbjct: 64  KALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQ 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC---TRANHVQAWQLFGEYCKRDVEATR 171
            L       K + GKALI RFCK +  +  Y     TR  H + W  F  Y   D+ A R
Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKT--YKIRRYTRETHPEEWAKFLRYAALDIIAMR 181

Query: 172 ELFKRLIPLSD--GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E++ R+    +   E ++ L+DQ INDRG+ +D+DL     + +   +++L E+  +   
Sbjct: 182 EVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFG 241

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +  +    ALR    L     + +  + TL  +L   +     K LI  RL +S +A 
Sbjct: 242 GKLTGNDFLPALRD---LAPAFTIHNAQKSTLNDLLEDPDFPDEGKVLIEMRLGASSTAS 298

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE----------- 338
            K N L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R E S++           
Sbjct: 299 TKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGE 358

Query: 339 ----------ILTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
                     +LT  I +L RG      D   L +  VR CII + GKK VVAD + +E 
Sbjct: 359 SDVAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEG 418

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKVMELALGYQG 443
           R LAWIAGE   +  F  G DIY  T  K F    + +    K+ R IGK  EL LGY G
Sbjct: 419 RGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGG 478

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------QDQYP 490
           G   F   A + GLDL   ++ +K T     W  A+  + +              +D+ P
Sbjct: 479 GVAAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERP 538

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--- 547
            + +  K +   C+ +K+ WR  H   +  W +L +   C ++  G          P   
Sbjct: 539 TY-ILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGK 597

Query: 548 ---RLVMRRHKRD----------------VHIVLPSSRRLVY--------SDVKGDCSYL 580
              ++V  + K D                + I LPS R + Y        +++  D    
Sbjct: 598 KALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKK 657

Query: 581 NTAT-------SQLMR----ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
            T+T       +Q  R    + TYGGKLTENIVQA+ RDIL   M      GY+IVL+VH
Sbjct: 658 RTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVH 717

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+++E PDT  ++   LC+LM   P WAKG PL AEG    RYRK
Sbjct: 718 DELITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 241/707 (34%), Positives = 350/707 (49%), Gaps = 39/707 (5%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L++D ET S + L +VG   YAE A   L AYA  D P ++WD T +  M  +L   +
Sbjct: 3   APLWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAM 61

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNGLPSSLKNACLALNF 118
            D      AHN+ F+R +        +P    +RW C+  +A ++ LP  L + C  L  
Sbjct: 62  DDADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKV 121

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYD-CTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
              + K+ +GK L+  F +   D+      TR  H   W+ F +Y   D+ A RE  +R+
Sbjct: 122 PADMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRM 181

Query: 178 IPLSDGERDL--WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
              +     +  W LDQ IN RG+++D  L         +E+ ++     +L+ G   + 
Sbjct: 182 PAWNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQF-TP 240

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
            Q    R+YL    G +L +   GT + +L    +    +++I   +AS+ ++  K   L
Sbjct: 241 GQREKFRVYLGQRLGYELDNTQAGTFQVMLRDPGLPADVREMIELAIASNKTSTAKYAAL 300

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGET-- 352
             AVS DGR RG LQF GASRT RW+G +FQPQNLP R   S E++   I+ L  G    
Sbjct: 301 DPAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHAL 360

Query: 353 -IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGE 406
              + + L +  +R C++A+ GKKLVVADL+ IE RVLAWIA E+WK+KAF       G 
Sbjct: 361 FFDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGP 420

Query: 407 DIY-VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF--- 462
           D+Y +T  +     P +   K + A GKV +LA GYQGG   ++T A   GL +  F   
Sbjct: 421 DLYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDT 480

Query: 463 -SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             Q V +    + WE   S   W   Q     + D++   A E  K AWRA+H    + W
Sbjct: 481 IQQMVPAQHVAKAWENLAS---WGHPQLESLEI-DEIEWVASETCKLAWRARHPATSKFW 536

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------- 574
             L       ++  GS+         R V  R ++ + + LPS R L Y +         
Sbjct: 537 YALGGAAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRD 596

Query: 575 ------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
                 G+ S     T Q +R  T+GGK+T N  Q I+RDIL   M  A   GY  VL+V
Sbjct: 597 ETIAYWGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSV 656

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE ++E PDT  F+   L  ++  NP+WA  LPL A G+EA RY+K
Sbjct: 657 HDEALTEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 318/579 (54%), Gaps = 19/579 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  Y  D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A S +    ++   + + +K+  T C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           +Q  G     R     +L +RR K  + I LPS R L Y
Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCY 576


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 233/689 (33%), Positives = 347/689 (50%), Gaps = 61/689 (8%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSK 91
           +A DD PV  WD T  + MP +L + +         +  +F+R++ K     +   +P  
Sbjct: 5   WAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYARMPEH 64

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRA 150
           +W  T V A  +GLP  L   C   N      K +EG  LI  FCK    +S     TR 
Sbjct: 65  KWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRRATRE 124

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL----IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            H + W  F  Y   D+ A R + K +     P +  E  LW  DQ IN RG ++D++L 
Sbjct: 125 THPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMDVELA 184

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
                 I + +K+L    V+LTDG +  + Q   L  +L     +DL DM + TL+  ++
Sbjct: 185 EAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLERRIN 244

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
             ++    ++L+  RL ++ ++  K  TL   VS+DGRLRG +QF GA RTGR +  +FQ
Sbjct: 245 DPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAHRLFQ 304

Query: 327 PQNLPRQE----------------RSEEILTQTIQALNRG---ETIADPLGLASDCVRSC 367
           P N+PR +                 +E      I AL  G       + +GL ++ VR  
Sbjct: 305 PGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANVVRGT 364

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPID 422
           I+A +GK+L V+DL+ IE R  AW+AGE WK++AF +     G D+Y   YA+AF   ++
Sbjct: 365 IVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFGVAVE 424

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA-ESH 481
            V K  R +GKVMELAL Y+GG   F T      +DL      V +     D E   E+ 
Sbjct: 425 AVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIVREAR 484

Query: 482 HLWMQDQYPEFAVKDKL-------IGTACELVKKAWRAKHQGVLQLWKDLTE-GFACVVQ 533
            +W      E+AVK +        +  AC+++K+ WR  H      W +L +     +  
Sbjct: 485 GMW------EWAVKKRRTLGLPQDVFIACDILKRLWRRAHPQTSSYWPELRDAAILAISS 538

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-----SDVKGDCSYL--NTATSQ 586
            G ++ ARRV      ++RR    + + LPS R+L Y     SD  G+ SY+  N  T +
Sbjct: 539 PGKTVHARRV------ILRRDGEWLRVQLPSKRQLCYLAPRVSD-DGEISYMGVNQYTRK 591

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGK+ EN+ QA++RD+L          GYDIVL++HDE+++E PD   +S   
Sbjct: 592 WQRTKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADE 651

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L SL+   P+WA+G+PL A G+ A RY+K
Sbjct: 652 LSSLIATAPAWAEGMPLAAAGFSAYRYKK 680


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 204/505 (40%), Positives = 283/505 (56%), Gaps = 19/505 (3%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL--NTATSQLMRE 590
           G     R     +L +RR K  + I LPS R L Y   +   G  +Y+  N  + +  R 
Sbjct: 362 GIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERL 416

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
           +TYGGK+ ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L
Sbjct: 417 KTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKL 476

Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ N  WA  LPL A G+E  RYRK
Sbjct: 477 LSFNSDWAWDLPLSANGFETYRYRK 501


>gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1]
          Length = 698

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 241/697 (34%), Positives = 335/697 (48%), Gaps = 61/697 (8%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----DETVMCVAHN-SLFERILFKKTLGID 87
           AYA+DDEPV++WD T  S MP DL + LR     +  +  V HN S+F+R++ K   G D
Sbjct: 8   AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           IP    I T + A  + LP SL   C  L  S    K + GKALI RF K +  +  Y  
Sbjct: 68  IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKI 125

Query: 148 TR---ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD--LWLLDQTINDRGYRID 202
            R     H   W LF +Y   D+ A RE+F +L    + E +  +  LDQ INDRG+++D
Sbjct: 126 RRYTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVD 185

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           + L     E + + + +L E+  +   G +        LR    L     + +  + TL 
Sbjct: 186 VALAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLN 242

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L+  ++   A  +I  RL ++ +A  K N L    SSD R RG +Q+ GA RT R++G
Sbjct: 243 DLLADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAG 302

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIA--DPLGLASDCVRSCIIASNGKKLVVAD 380
             FQPQNL R    ++ L + I AL +G      D   L +  VRSCII   G K VVAD
Sbjct: 303 KGFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVAD 362

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMEL 437
            + +E R LAW+AGE+  +  F  G DIY  T  K F    D + KE+   R IGK  EL
Sbjct: 363 YSNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACEL 422

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------ 485
            LGY GG   F   A + GLDL   ++ +  T     W      + W             
Sbjct: 423 GLGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPG 482

Query: 486 -QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARR 542
            +D  P + + DK +   C+ +K+ WR  H   +  W+D+ +     ++  G    +  R
Sbjct: 483 EKDDRPSY-ILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPR 541

Query: 543 VANVPRLVMRRHKRD------VHIVLPSSRRLVY----------SDVKGDCSY------- 579
                R V   +  +      + + LPS R + Y          +D  G  S        
Sbjct: 542 GVKFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQ 601

Query: 580 -LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
             N  T Q   + TY GKL EN  QA+ RD+L   + N   NGY IVL VHDEI+ ETPD
Sbjct: 602 GENQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPD 661

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P ++V  L  LM + P WA+G PL AEG E KRY K
Sbjct: 662 LPEYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 235/708 (33%), Positives = 339/708 (47%), Gaps = 94/708 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID+ET S   +  VG + YAE A I L AYAWDD PV++ D T +  +P+D+L  L D
Sbjct: 3   LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62

Query: 64  ETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNACLALN 117
             +M  A N+ FER +    L  +      +    W CT V A T GLP SL      L 
Sbjct: 63  NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122

Query: 118 FSEHLTKMEEGKALIARFCK---------GSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
             E   KM  G  LI  FCK         G   + P D       + W  F  YC RDVE
Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAP-----EKWATFKAYCVRDVE 177

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           A RE+ +RL   P+ + ER LW LDQ INDRG RID  L        +  R ++  +   
Sbjct: 178 AEREVRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASA 237

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L+   + +      L+ +++   G   + +++ T+  ++  +  ++  K ++  ++  S 
Sbjct: 238 LSG--LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAK-SETVKTMLQLKMLLSK 294

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   + +A  SDGR  G LQFYGA+RTGRW+G + Q QNLPR   +E  L      
Sbjct: 295 TSVKKYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAE--LDDARAL 352

Query: 347 LNRGETIA------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           L  G+T A      +P  + S  +R+  I + G +  VAD + IEARV+AW+AGE W++ 
Sbjct: 353 LRCGDTDALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMD 412

Query: 401 AFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            FA+G DIY  + +K F+ P++K  V+   R  GKV ELALGY GG    K M +     
Sbjct: 413 VFADGGDIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGA----- 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL--VKKAWRAKHQG 516
                                                DKL  T  EL  +K++WR     
Sbjct: 468 -------------------------------------DKLGLTDAELEEIKQSWRKASPR 490

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------ 570
           +++LW D        V+E  ++S +       + +      + I LPS R L Y      
Sbjct: 491 IVRLWSDFESAALEAVRERSTVSLQH-----GIKLECRSGILFIRLPSGRSLAYVKPRIE 545

Query: 571 ---SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
              S  +   +Y         ++RTYGG+L EN +QAI+RD L   M      GY IV+ 
Sbjct: 546 YEESFDREGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMH 605

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +HDE+V ETP +    +  +C +M+K   WA GL L A+GY    Y+K
Sbjct: 606 IHDEVVVETPRS-VDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 244/709 (34%), Positives = 351/709 (49%), Gaps = 92/709 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y + A   I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168
           +E   KM+EGKALI  FCK      P   T+ N           ++ W  F EYCK+DV 
Sbjct: 121 NEDKQKMKEGKALIQYFCK------PCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVV 174

Query: 169 ATRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             RE+  +L      ER+  LW LDQ IND G ++D +L+    E   +  +KL ++ +K
Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +      L+ +L    G ++  +++ ++  IL   +   + + L L +L S  
Sbjct: 235 ITG--LNNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKLMSK- 291

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           ++I K   +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +  
Sbjct: 292 TSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNL-- 349

Query: 347 LNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           L  G     E + D +  + S  +R+  I S G + +V+D + IEARV+AW AGE W++ 
Sbjct: 350 LKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLD 409

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM-ASHCGL 457
            F +   IY  + +  F  PI+ + K    R  GK+ ELALGY G      +M A   GL
Sbjct: 410 VFNSHGKIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGL 469

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           D ++    V   +T+ +     +   W  D+  + A+KD+ I      VK          
Sbjct: 470 DEEELQPLV---TTWRNANPNITKFWWDVDKAAKKAIKDRTI------VK---------- 510

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------- 570
                 L  G   +   G                      + I LPS RRL Y       
Sbjct: 511 ------LQHGIKFIYNPGV---------------------LFIELPSGRRLSYLRPKIEP 543

Query: 571 -SDVKGD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
            +   GD  +Y  +   + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+
Sbjct: 544 HTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVM 603

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDE+V +  D    S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 604 HVHDELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 237/709 (33%), Positives = 350/709 (49%), Gaps = 92/709 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y + A   I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168
           +E   KM+EGKALI  FCK      P   T+ N           ++ W  F EYCK+DV 
Sbjct: 121 NEDKQKMKEGKALIQYFCK------PCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVV 174

Query: 169 ATRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             RE+  +L      ER+  LW LDQ IND G ++D +L+    E   +  +KL ++ +K
Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +      L+ +L    G ++  +++ ++  IL   +   + + L L +L S  
Sbjct: 235 ITG--LNNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKLMSK- 291

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           ++I K   +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +  
Sbjct: 292 TSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNL-- 349

Query: 347 LNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           L  G     E + D +  + S  +R+  I S G + +V+D + IEARV+AW+AGE W++ 
Sbjct: 350 LKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLD 409

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F +   IY  + ++ F  PI+ + K  E R  GK+ EL+ GY G      +M       
Sbjct: 410 VFNSHGKIYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMG------ 463

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+K  L     + +  AWR  +  + 
Sbjct: 464 ----------------------------------AIKMGLKEEELQPIVTAWRNANPNIT 489

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVY------- 570
           + W D+ +     +++      R +  +   +   +   V  I LPSSRRL Y       
Sbjct: 490 KFWWDVDKAAKKAIKD------RTIVEIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEP 543

Query: 571 -SDVKGD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
            +   GD  +Y  +   + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+
Sbjct: 544 HTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVM 603

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDE+V +  D    S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 604 HVHDELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 236/709 (33%), Positives = 349/709 (49%), Gaps = 92/709 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y + A   I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168
           +E   KM+EGKALI  FCK      P   T+ N           ++ W  F EYCK+DV 
Sbjct: 121 NEDKQKMKEGKALIQYFCK------PCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVV 174

Query: 169 ATRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             RE+  +L      ER+  LW LDQ IND G ++D +L+    E   +  +KL ++ +K
Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +      L+ +L      ++  +++ ++  IL   +   + + L L +L S  
Sbjct: 235 ITG--LNNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDENVVRTLELRKLMSK- 291

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           ++I K   +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +  
Sbjct: 292 TSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNL-- 349

Query: 347 LNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           L  G     E + D +  + S  +R+  I S G + +V+D + IEARV+AW+AGE W++ 
Sbjct: 350 LKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLD 409

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F +   IY  + ++ F  PI+ + K  E R  GK+ EL+ GY G      +M       
Sbjct: 410 VFNSHGKIYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMG------ 463

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+K  L     + +  AWR  +  + 
Sbjct: 464 ----------------------------------AIKMGLKEEELQPIVTAWRNANPNIT 489

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVY------- 570
           + W D+ +     +++      R +  +   +   +   V  I LPSSRRL Y       
Sbjct: 490 KFWWDVDKAAKKAIKD------RTIVEIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEP 543

Query: 571 -SDVKGD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
            +   GD  +Y  +   + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+
Sbjct: 544 HTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVM 603

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDE+V +  D    S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 604 HVHDELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 297/564 (52%), Gaps = 15/564 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A  DEPV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P   RW  T V A  +GLP +L   C  L   +  
Sbjct: 64  PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKGSI-DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +    +TDG ++++ Q  
Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K  +L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMADPDLPSAVKELLAIRLQASTTSTSKYKSLMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           SSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    ++ + + I+AL  G       + 
Sbjct: 304 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CI+A  GKKLVV+DL+ IE R LAW+AGE WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   D V K QR IGKVMEL LG+ GG   F T A   GLDL + +        
Sbjct: 424 AYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A++ +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKNWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRAA 542

Query: 532 VQEGGSISARRVA-NVPRLVMRRH 554
           +      +  R++ + PR  M  H
Sbjct: 543 IATPTKDAVLRLSESPPRWCMAAH 566


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 231/711 (32%), Positives = 348/711 (48%), Gaps = 103/711 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY  +    I L AYA+D + VK+ D      +P++++
Sbjct: 1   MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +E ++  A N+ FERI   + L   + +  W CT+V A T G P SL      L  
Sbjct: 61  EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168
           +E   KM+EGK LI  F      S P   TR N            + W  F +YC RDVE
Sbjct: 121 TEQ--KMKEGKELIRYF------SIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             R + K+L   P+S+ E+  ++LD  INDRG  +DLDLV +  E     ++    +  +
Sbjct: 173 VERAIRKKLSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQR 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL------ILN 280
           LT   + +      L+ +L          +  G     LS   ++ LAK+       +LN
Sbjct: 233 LTG--LDNPNSVAQLKQWL----------IENGVEVDSLSKKAVSDLAKEADGEVERLLN 280

Query: 281 -RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            RL  + ++I K   +  AV  D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  
Sbjct: 281 LRLQLAKTSIKKYEAIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLT 340

Query: 340 LTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           L + +      +T+A        + S+ +R+  I  +  + +VAD + IEARV+AW+AGE
Sbjct: 341 LARNLVKSGDFDTLALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGE 400

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS 453
            W++  FA    IY  + ++ F  PI++++K    R  GK+ ELALGY G       M +
Sbjct: 401 KWRMDVFATHGKIYEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMGA 460

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+                                   +D+L G        AWR  
Sbjct: 461 ---LDMG--------------------------------VAEDELQGLVT-----AWRQA 480

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  + +LW D+ +     V++  ++       V ++ ++     + I LPS RRL Y   
Sbjct: 481 NPNITKLWWDIDKAAIKAVKKKTTVM------VGKIKLQYESGIMFITLPSGRRLSYIKP 534

Query: 574 KGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + + +             AT +  R  TYG KL ENIVQAI+RD+L E M    +NGY+I
Sbjct: 535 RIEPNKFERDAVTYEGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEI 594

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ +HDEIV E P   + S+  +C +M   P+WA+ LPL+A+G+E + YRK
Sbjct: 595 VMHIHDEIVIEAP-LNFGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 241/710 (33%), Positives = 348/710 (49%), Gaps = 97/710 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY+E A   I L AYA DDE V++ D      +P+++L
Sbjct: 1   MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + + D TV+  A+N+ FER    K   I +P ++W CTSV A   GLP  L      L  
Sbjct: 61  KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSI-------DSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                KM+EGKALI  F   CK +        + P +D  R      W  F +YCK+DVE
Sbjct: 121 QGQ--KMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPAR------WDTFKDYCKQDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             RE+ K+L   PL   E++LW LDQ IND G  ID +LV    +     + +L E+ V+
Sbjct: 173 VEREIRKKLEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVR 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +      L+ +L L  G+++  +++  +++++S     ++ + L L R A S 
Sbjct: 233 LTG--LENPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVENPEVKRLLELRR-AMSK 288

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR------QERSEEIL 340
           +++ K   +  +V SD R+RG LQFYGASRTGRW+G + Q  NLPR      Q   E + 
Sbjct: 289 TSVKKYEAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLE 348

Query: 341 TQTIQALN-RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +   +AL    E+++D L   S  +R+  I S G + VVAD + IEARV+AW+AGE W++
Sbjct: 349 SGKYEALEVLFESVSDVL---SQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRM 405

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F +   IY  + A+ F  PI+ + K    R  GK+ ELALGY G       M +   G
Sbjct: 406 DVFQSHGKIYEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMGALEMG 465

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L                            +D+ PE                 AWR  +  
Sbjct: 466 L---------------------------TEDELPELV--------------SAWREANPK 484

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--- 573
           +++LW  +       V+E   +  +       L     K  + I LPS R L Y      
Sbjct: 485 IVKLWWGIEAAAIKAVKEKAVVKMQH-----GLTFHYTKGILFITLPSGRSLAYVRPKIG 539

Query: 574 ------KGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
                 K   +Y  T   + Q  R  TYGGKLTENI+QAI+RD L   M    + GY I 
Sbjct: 540 IDERFGKEQLTYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRIN 599

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             VHDE++ + P     S+  + ++M ++  WA GLPL A+ +E   Y+K
Sbjct: 600 FHVHDEVILDVP-IATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 239/705 (33%), Positives = 333/705 (47%), Gaps = 93/705 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP VGV+ YA  E   I L AYA D   V++ D      +P D+L
Sbjct: 9   MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V+  A N+ FER+     LG  +  + W C+ V A   G+P  L     AL+ 
Sbjct: 69  DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                KM EGK LI  F      S P   T+AN  +           W+ F  YCKRDVE
Sbjct: 129 ETE--KMGEGKNLIRYF------SLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVE 180

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               + KRL  +P+   E D +  DQ INDRG RID DL     +     R    E + +
Sbjct: 181 VELAITKRLHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRE 240

Query: 227 LTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           LT    R        ++  +L + G+ +  +++  + + L  +    +A+ L L R   +
Sbjct: 241 LT----RVDNPASVTQLLAWLRSQGLQIDSLAKADVAAALEGALEGDVAEVLAL-RQEMA 295

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            S++ K   +      DGR  G LQF GA RTGRW+G + Q QNLPRQ  S+      + 
Sbjct: 296 KSSVKKYERMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLV 355

Query: 346 ALNRGETIADPLGLA----SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                + +    G A    S+ +R+  +A  G + +VAD + IEAR +AW+AGE W +  
Sbjct: 356 RTGHADMLETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDL 415

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSK-EQRAIGKVMELALGYQGGAKVFKTMASH-CGLDL 459
           F  G DIY  T  + F   ++K S   QRA  KV  LA GYQGG    KTM     GL  
Sbjct: 416 FEAGGDIYCETGTRMFRQVVEKHSPLRQRA--KVAVLACGYQGGVGALKTMGGEKLGLSE 473

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            + +  V                                          AWRA +  + Q
Sbjct: 474 DEMADIV-----------------------------------------AAWRAANPKIAQ 492

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCS 578
           LW D+      V+++GG+ +      V R+ +   K  + I LPS R LVY   + G+  
Sbjct: 493 LWWDINAAAIAVIKDGGARA------VGRIRLAHDKGALIITLPSGRPLVYPSPRIGENR 546

Query: 579 YLNTATSQL--------MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
           +   + + +         R  TYGGKLTENIVQA +RDIL   +    ++GY +V+ +HD
Sbjct: 547 FGGESITHMGVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHD 606

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V+E P+    SV  LC+LM++ P WA GLPL AEG+E+  YRK
Sbjct: 607 EVVTEVPEG-RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score =  317 bits (811), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 222/697 (31%), Positives = 348/697 (49%), Gaps = 76/697 (10%)

Query: 8   IETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +ET S   L   GV+ Y  +E   I L AYA DDEPVK+ D      +PS++L  + +  
Sbjct: 1   METYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPA 60

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           ++  AHN++FER+   + LG  + + +W C+ + A   GLP+SLK+    L  SE   KM
Sbjct: 61  IIKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKM 120

Query: 126 EEGKALIARFCK----GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
             GK LI+ FCK      ++      T A+  + WQLF +YC RDVE  RE+  +L   P
Sbjct: 121 RIGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFP 180

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           +   E +LW  DQ +ND G RID+++V  +     +  ++L  +  ++T+GI    ++  
Sbjct: 181 IPASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--GPKKIA 238

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            L+ ++       +  + +  +  +L  S+I+   + ++  R  S  ++I K   +  +V
Sbjct: 239 QLKEWICRKEDRSIESLDKDAVIELLKDSSISPETRRVLQIRQESGKTSITKYAAIQRSV 298

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG- 358
            +D RL G LQFYGA+RTGRW+G +FQPQNLPR   ++  L + +      E++    G 
Sbjct: 299 CNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGS 358

Query: 359 ---LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
              + S  +R+ +I  NG    +AD + IEAR+ AW   E+W+ + FA    IY  + A+
Sbjct: 359 YNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQ 418

Query: 416 AFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            F+ PI+ V+K  + R  GKV ELALGY GG    + M    G D+   S++        
Sbjct: 419 MFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMG---GADM-GLSEDE------- 467

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                      MQD                 +V K WR     + ++W  + +     V+
Sbjct: 468 -----------MQD-----------------IVNK-WRLASPNIKKMWYRVQDAAYTAVR 498

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------GD-CSYLNTATSQ 586
           E      +RV+ V  +        +   LPS RRL Y   K      GD  +Y    + Q
Sbjct: 499 E-----RKRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQ 553

Query: 587 -------LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-D 638
                    R++T+GGKL EN++QAI+RD L + M      GY I++ +HDE+V E P +
Sbjct: 554 DGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSE 613

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           T    +  +  +M +   WA GL L A+G+ ++ YRK
Sbjct: 614 TAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 231/712 (32%), Positives = 342/712 (48%), Gaps = 95/712 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L ID+ET S   +   G + Y E     I L AYA++DEPV++ D T+  A+P  ++
Sbjct: 1   MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             L D  V+  A N+ FER   K  +  +  P  +W CT + A T GLPSSL     AL 
Sbjct: 61  DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATREL 173
             E   KM+EGKALI  FCK    +   D    N     ++ W+ F EYCKRDVE  RE+
Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180

Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              L        E+ LW LDQ INDRG   DL L+ +  E      ++L +  +KLT   
Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG-- 238

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSGSA 288
           + +      ++ ++    G ++  +++ ++  ++  +   N +++ K L L +L +  ++
Sbjct: 239 LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAK-TS 297

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           I K +T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +  L      + 
Sbjct: 298 IKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPD--LDNARNFVR 355

Query: 349 RG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            G         +++ D L   S  +R+  I   G + +V+D + IEARV+AW AGE W++
Sbjct: 356 EGKFEEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             F+    IY  + ++ F  PI+ + K  E R  GK+ ELALGY G      +M     +
Sbjct: 413 DVFSTHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSI 472

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
             ++    VKS                                         WR  +  +
Sbjct: 473 PEEELPGLVKS-----------------------------------------WRNANPNI 491

Query: 518 LQLWKDLTEGFACVVQEGGSISAR---RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            + W D+ +     ++E  +++ +   +    P ++         I LPS R+L Y   K
Sbjct: 492 TKFWWDVDKAAKKAIRERTTVNLQYGLKFIYDPGVLF--------IQLPSGRKLSYIRPK 543

Query: 575 --------GD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
                   GD  +Y  +   + Q  R  TYG KL ENIVQA SRD L E M    K GYD
Sbjct: 544 IEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYD 603

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV+ VHDE+V + P     +V  +  LM +   WA GLPLKA+GYE   Y K
Sbjct: 604 IVMHVHDEVVLDIPKD-RATVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 231/714 (32%), Positives = 342/714 (47%), Gaps = 106/714 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L ID+ET S   +   G + Y E     I L AYA++DEPV++ D      +PS++   L
Sbjct: 8   LSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVFYAL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  ++  A N+ FER   K       P ++W CT V A T GLPSSL     AL F E 
Sbjct: 68  TDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKFEED 127

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVEATR 171
             KM+EGKALI  FCK      P   T+ N           ++ W+ F EYCKRDVE  R
Sbjct: 128 KQKMKEGKALIQYFCK------PCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 181

Query: 172 ELFKRLIPLSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+   L        E+ LW LDQ INDRG   DL L+ +  E      ++L +  ++LT 
Sbjct: 182 EIRNLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG 241

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSG 286
             + +      ++ ++    G ++  +++ ++  ++  +   N +++ K L L +L +  
Sbjct: 242 --LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAK- 298

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE--------- 337
           ++I K +T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +         
Sbjct: 299 TSIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVR 358

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           E   Q ++ L   +++ D L   S  +R+  I   G + +V+D + IEARV+AW AGE W
Sbjct: 359 EGKFQEVEFL--FDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQW 413

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHC 455
           ++  F+    IY  + ++ F   I+ + K  E R  GK+ ELALGY G      +M    
Sbjct: 414 RLDVFSTHGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKK 473

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            +  ++    VKS                                         WR  + 
Sbjct: 474 SIPEEELPGLVKS-----------------------------------------WRNANP 492

Query: 516 GVLQLWKDLTEGFACVVQEGGSISAR---RVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            + + W D+ +    V++E  +++ +   +    P ++         I LPS R+L Y  
Sbjct: 493 NITKFWWDVDKAAKKVIRERTTVNLQYGLKFIYDPGVLF--------IQLPSGRKLSYIR 544

Query: 573 VK--------GD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
            K        GD  +Y  +   + Q  R  TYG KL ENIVQA SRD L E M    K G
Sbjct: 545 PKIEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAG 604

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           YDIV+ VHDE+V + P     +V  +  LM +   WA GLPLKA+GYE   Y+K
Sbjct: 605 YDIVMHVHDEVVLDIPKD-RATVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 228/703 (32%), Positives = 339/703 (48%), Gaps = 83/703 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L   GV+ Y  A    I L  YAWDD+PV+L D      +P  ++
Sbjct: 1   MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             +    V+  A N+ FERI   K L   + +  W CT++ A   GLP  L     AL  
Sbjct: 61  NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELF 174
              + K   GK LI  F   CK +  +        +H  + WQ F +YC RDVE  RE+ 
Sbjct: 121 K--VQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++   P+ + E  LWLLDQ IND G  +D+ LV +  +   Q   +L+ +   LT   +
Sbjct: 179 RKIERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLTK--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +S+  ++++L+ ++  ++ + L L R   + S+I K 
Sbjct: 237 DNPNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDAD-GEIERLLTL-RQEMAKSSIAKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V  D R+RG  QFYGA+RTGRW+G +FQ QNLP+    +  + + +    R + 
Sbjct: 294 AAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKE 353

Query: 353 I-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           +     + P+ L S+ +R+ +I   G + +VAD + IEARVLAW+A E W +  F     
Sbjct: 354 LELLYESVPIVL-SELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGK 412

Query: 408 IYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           IY  T ++ F  P++K++K     E RA GKV  LA GYQGG    K M           
Sbjct: 413 IYEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMG---------- 462

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A K  L  T  + + +AWR+ +Q +++ W 
Sbjct: 463 ------------------------------ADKMGLSDTELDDIVRAWRSANQRIVRFWY 492

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------SDVKGD 576
           D+ +     V+E      R    V  L  +     + I LPS RRL Y       D++ D
Sbjct: 493 DVEKAAVLAVRE------REPQRVGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFD 546

Query: 577 CSYLNTA----TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
              L         Q  R++TYGG+L ENIVQ  +RD L E M      GY IV  VHDEI
Sbjct: 547 KDGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEI 606

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++E       S+  LC +M +   WA GLPL+A+G+E   Y+K
Sbjct: 607 ITEMRKGQ-GSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 227/705 (32%), Positives = 340/705 (48%), Gaps = 93/705 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +     I L AY  D+   ++ D  +   +P ++L
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+ ++  A N+ FER+   K LG  + +K W CT+VLA + GLP SL+     LN 
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
            E   KM+EG  LI  FC       P   T+AN ++           W+LF  YCKRDVE
Sbjct: 121 EEQ--KMKEGSRLIRYFCL------PCKATKANGMRERNFPHHAPEDWELFKSYCKRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             + +  RL   PL + E+  + LDQ INDRG  +D  LV +        ++++ +   +
Sbjct: 173 VEQAIRVRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L+   + +      L+ +L    G+ +  + +  +   L  ++   L  +++  RL  S 
Sbjct: 233 LSG--LENPNSVSQLKGWLEE-QGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   +   V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+  
Sbjct: 288 TSVKKYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVK 347

Query: 347 LNRGETIADPL-----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
             + ET+ D L     G+ S+ +R+  +   G + +VAD A IEARVLAW++GE W+++ 
Sbjct: 348 EGQFETL-DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEV 406

Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F  G DIY  + +  F  P++K   +   R  GK+ ELALGY G       M +   LD+
Sbjct: 407 FEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGA---LDM 463

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                           E+ E   L  Q                       WR+ +  ++ 
Sbjct: 464 --------------GLEEEELQPLVNQ-----------------------WRSANPHIVA 486

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV------ 573
            W ++ +    V +       R    +  LV+      + I LPS R+L Y         
Sbjct: 487 FWWEIDKVAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNA 540

Query: 574 --KGDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
             K   +Y     S +  R  TYG KL ENIVQ I+RD+L  GM    + G  IVL VHD
Sbjct: 541 FGKPGLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHD 600

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E V E  +    SV  +C L+   P WA+GLPL+A+GY  + Y+K
Sbjct: 601 EAVVEVREE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 227/705 (32%), Positives = 340/705 (48%), Gaps = 93/705 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +     I L AY  D+   ++ D  +   +P ++L
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+ ++  A N+ FER+   K LG  + +K W CT+VLA + GLP SL+     LN 
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
            E   KM+EG  LI  FC       P   T+AN ++           W+LF  YCKRDVE
Sbjct: 121 EEQ--KMKEGSRLIRYFCL------PCKATKANGMRERNFPHHAPEDWELFKSYCKRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             + +  RL   PL + E+  + LDQ INDRG  +D  LV +        ++++ +   +
Sbjct: 173 VEQAIRVRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L+   + +      L+ +L    G+ +  + +  +   L  ++   L  +++  RL  S 
Sbjct: 233 LSG--LENPNSVSQLKGWLEE-QGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   +   V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+  
Sbjct: 288 TSVKKYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVK 347

Query: 347 LNRGETIADPL-----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
             + ET+ D L     G+ S+ +R+  +   G + +VAD A IEARVLAW++GE W+++ 
Sbjct: 348 EGQVETL-DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEV 406

Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F  G DIY  + +  F  P++K   +   R  GK+ ELALGY G       M +   LD+
Sbjct: 407 FEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGA---LDM 463

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                           E+ E   L  Q                       WR+ +  ++ 
Sbjct: 464 --------------GLEEEELQPLVNQ-----------------------WRSANPHIVA 486

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV------ 573
            W ++ +    V +       R    +  LV+      + I LPS R+L Y         
Sbjct: 487 FWWEIDKVAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNA 540

Query: 574 --KGDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
             K   +Y     S +  R  TYG KL ENIVQ I+RD+L  GM    + G  IVL VHD
Sbjct: 541 FGKPGLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHD 600

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E V E  +    SV  +C L+   P WA+GLPL+A+GY  + Y+K
Sbjct: 601 EAVVEVREE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 567

 Score =  309 bits (792), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 287/571 (50%), Gaps = 58/571 (10%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAFAN----------------------------------------GEDIYV 410
           W+AGE  K+ AF +                                        G+DIY 
Sbjct: 243 WLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             YA +F      V+KEQR IGKV ELALGY GG   F   A+   +DL+  ++      
Sbjct: 303 RAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPP 362

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                E  E+      +Q P F + D+    AC++ K+AWR  H  +   W+ L   FA 
Sbjct: 363 LLLQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAA 418

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--T 584
               G   +A     +    ++  +  + + LPS R L Y+    D  G  SY+ T   T
Sbjct: 419 TDAIGHPETAHTCCGI---TVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPIT 475

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE+++E  D   F+ 
Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score =  309 bits (792), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 216/702 (30%), Positives = 346/702 (49%), Gaps = 91/702 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L K GV+AYA+     + L AY++D    ++ D  +   +P ++   +
Sbjct: 5   LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+ VM  A N+ FER    K  G  +  + W C++V A    LP SL+     L   + 
Sbjct: 65  FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEATR 171
             KM+EGK LI  FC       P   T+AN         H  + W+LF  YC RDV+  +
Sbjct: 125 --KMKEGKDLIRYFCM------PCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEK 176

Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+ ++L   P+ + E +L+ LDQ INDRG  +D +LV +        +  + +   +LT 
Sbjct: 177 EIRRKLQHFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG 236

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             + +      ++ +L    G+++  +S+ T+  ++  S+     ++L+  RL  + +++
Sbjct: 237 --LENPNSVAQIKSWLGE-NGVEMESLSKKTVAGLIEESDGE--VQELLRLRLLMAKTSV 291

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K   +  +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+    +  + + +    R
Sbjct: 292 KKYEAMERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGR 351

Query: 350 GETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
            E +     + P  + S+ +R+  I   G + VVAD + IEARVLAW++GE W+++ FA+
Sbjct: 352 FEDVELLYDSTP-NVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFAS 410

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              IY  + +  F+ PI++V+K    R  GK+ ELALGY G      +M +   LD+   
Sbjct: 411 HGKIYEASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMGA---LDMGLV 467

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            + +    +                                     AWR+ +  + Q W 
Sbjct: 468 EEELAPLVS-------------------------------------AWRSANPHITQFWW 490

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------K 574
           D+    A  V+   +++ ++     R+V       + + LPS R+L Y           +
Sbjct: 491 DVD---AAAVK---AVTEKKKTRAGRIVFEYKSGILFVELPSGRKLSYVKPRMALNKFGR 544

Query: 575 GDCSYLNTATSQLM-RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
              +Y   A ++   R  TYG KL ENIVQ  +RD+L E M    + GY IV+  HDEI+
Sbjct: 545 NGLTYEGIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEII 604

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +E P+    SV  +C++M   P WA GLPL+A+GYE   Y+K
Sbjct: 605 AEVPEGT-GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 231/714 (32%), Positives = 330/714 (46%), Gaps = 104/714 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L IDIET S   L K GV+AYAE     I L  YA+DDEPV+L D      +P ++L
Sbjct: 1   MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  ++  A N+ FER    K     +P ++W CT V A T GLP  L +    L  
Sbjct: 61  NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSI-------DSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +   K   GKALI  F   CK +        + P +D  R      W  F  YCK+DV 
Sbjct: 121 KQQ--KDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDR------WAKFKSYCKQDVA 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             R++ K L   P+ + E  LW LDQ IND G  +D  LV        Q + KL     K
Sbjct: 173 VERDIRKTLERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAK 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + + +    L+ +L    G+++  +++ ++  +L  +  +   K ++  R   + 
Sbjct: 233 LTG--LDNPKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTE-SSTVKQMLELRQEMAK 289

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   +  A   DGR+RG LQFYGA+RTGRW+G + Q QNLPR   S + L Q  Q 
Sbjct: 290 TSVKKYLAMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRN--SIKDLDQARQL 347

Query: 347 LNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           L  G         E++   L   S  +R+  +   G + +VAD + IEARV+AW+A E W
Sbjct: 348 LKAGDYEMLELLFESVPTVL---SQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKW 404

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHC 455
           ++  F     IY  + +  F+ PI++++K    R  GKV ELALGYQGG      M    
Sbjct: 405 RMDVFRTHGKIYEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG--- 461

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                                A+K+ L       + K WR    
Sbjct: 462 -------------------------------------ALKEGLTEEELPGLVKLWRQSSP 484

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY----- 570
            +++ W D        V+E  ++      +            + I LPS RRL Y     
Sbjct: 485 NIVKFWYDTEAAAIKAVKEKTTVELHHGIH-----FIYESGILFIRLPSGRRLAYIKPRI 539

Query: 571 -SDVKGDCSYLN-----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
            ++ + D   L        T Q  R  TYGGKL ENIVQA++RD L E +      GY  
Sbjct: 540 QNNPRLDKPALTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKT 599

Query: 625 VLTVHDEIVSETPDTPYFSVGTL---CSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ VHDE V E P      VG+L   C +M +   WA GLP++A+G+E+  Y+K
Sbjct: 600 VMHVHDESVMEMP----HGVGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 234/707 (33%), Positives = 340/707 (48%), Gaps = 92/707 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E +   I L AYA+D+EP+K+ D  +  A+P ++L
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K     +P  +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
           SE   K +EGKALI  F      S P   T+AN  +           W+ F  YC +DVE
Sbjct: 121 SEQ--KDKEGKALIRYF------SVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVE 172

Query: 169 ATRELFKRLI---PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             R +  R+    PL   E++LW LDQ INDRG RID DLV        Q +  L  +  
Sbjct: 173 VERSIKNRISKFEPLK-AEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAK 231

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +LT   + +   T  L+ +L    G+ +  +++  ++ ++  ++   + + L L R   +
Sbjct: 232 ELTG--LPNPNSTAQLKKWL-EDKGLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMA 287

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            +++ K   + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++    +T+ 
Sbjct: 288 KTSVKKYLAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLL 347

Query: 346 ALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                E I    G    + S  VR+  I S G +  V+D + IEARV+AW+AGE W++  
Sbjct: 348 KGGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDV 407

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLD 458
           F     IY  + A+ F  P++ ++K    R  GKV ELALGYQGG      M +   GLD
Sbjct: 408 FNTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLD 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                      +D+ P                 KAWR  ++ ++
Sbjct: 468 ---------------------------EDELPGLV--------------KAWRTANKKIV 486

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC- 577
           Q W D+       V+E   +  +       L        + + LPS RRL Y+  K +  
Sbjct: 487 QFWYDVEAAAVKAVKERKPVKIQH-----GLTFLCESGILFVQLPSGRRLAYAKPKLEID 541

Query: 578 --------SYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
                   +Y     S +  R  TYGGKL ENIVQA++RD L   +      GY  V+ V
Sbjct: 542 DRFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHV 601

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE V + P      +  + S+M +   WAKGLPL A+G+    Y+K
Sbjct: 602 HDETVLDVPRGKN-ELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
          Length = 567

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 286/571 (50%), Gaps = 58/571 (10%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAFAN----------------------------------------GEDIYV 410
           W+AGE  K+ AF +                                        G+DIY 
Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             YA +F      V+K+QR IGKV ELALGY GG   F   A+   +DL+  ++      
Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPP 362

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                E  E+      +Q P F + D+    AC++ K+AWR  H  +   WK L   FA 
Sbjct: 363 LLLQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAA 418

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--AT 584
                   +A     +    M+  +  + + LPS R L Y+    D  G  SY+ T   T
Sbjct: 419 TDAIRHPETAHTCCGI---TMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+ 
Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNA 535

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 231/706 (32%), Positives = 338/706 (47%), Gaps = 90/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+D+EP+K+ D  +  A+P +++
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K     +P  +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
           SE   K +EGKALI  F      S P   T+AN  +           W+ F  YC +DVE
Sbjct: 121 SEQ--KDKEGKALIRYF------SVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             R +  R+    L   E++LW LDQ INDRG RID DLV        Q +  L  +  +
Sbjct: 173 VERSIKNRISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +   T  L+ +L    G+ +  +++  ++ ++  ++   + + L L R   + 
Sbjct: 233 LTG--LPNPNSTAQLKTWL-EDKGLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAK 288

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++    +T+  
Sbjct: 289 TSVKKYLAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLK 348

Query: 347 LNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
               E I    G    + S  VR+  I S G +  V+D + IEARV+AW+AGE W++  F
Sbjct: 349 GGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVF 408

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDL 459
                IY  + A+ F  P++ ++K    R  GKV ELALGYQGG      M +   GLD 
Sbjct: 409 NTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLD- 467

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                     +D+ P                 KAWR  ++ ++Q
Sbjct: 468 --------------------------EDELPGLV--------------KAWRTANKKIVQ 487

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-- 577
            W D+       V+E   +  +       L        + + LPS RRL Y+  K +   
Sbjct: 488 FWYDVEAAAVKAVKERKPVKIQH-----GLTFLCESGILFVQLPSGRRLAYAKPKLEIDD 542

Query: 578 -------SYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y     S +  R  TYGGKL ENIVQA++RD L   +      GY  V+ VH
Sbjct: 543 RFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVH 602

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE V + P      +  + ++M +   WAKGLPL A+G+    Y+K
Sbjct: 603 DEAVLDVPRGKN-ELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 232/717 (32%), Positives = 339/717 (47%), Gaps = 115/717 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +  Q  I L AY  D+E  ++ D  +   +P  +L
Sbjct: 1   MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             LRD+ V+  A N+ FER+   K L   + ++ W CT+V A + GLP SL+     LN 
Sbjct: 61  SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            E   KM+EG+ LI  FC   + +I +   +    +H ++ W+LF  YCKRDVE  + + 
Sbjct: 121 EEQ--KMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   PL + E+ L+ LDQ INDRG  +D       QEL++Q           L D   
Sbjct: 179 KRLSNYPLLESEQLLYQLDQAINDRGIAVD-------QELVSQ---------AILGD--- 219

Query: 233 RSSRQTYALRMYLFLITGIDLVDM---------SEGTLKSILSHSNITQLAKDL---ILN 280
            S ++    R Y   ++G+D  +          ++G     L   ++ +  K++   IL 
Sbjct: 220 LSYKEQVTQRAYE--LSGLDNPNSVSQLKGWLENQGVFMDSLGKKDVAKQLKEVDGEILE 277

Query: 281 ----RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               RL  S +++ K   +   V SD R+ G LQFYGA+RTGRW+G + Q QNLP+ +  
Sbjct: 278 MLKLRLLMSKTSVKKYQAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLK 337

Query: 337 EEILTQTIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           +  L +T+  +  G+  A  L       + S+ +R+  +  +G + +VAD A IEARVLA
Sbjct: 338 DLDLARTL--VKDGQLKALDLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLA 395

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
           W++GE W+++ F  G DIY  + A  F  P++K  V+   R  GK+ ELALGY G     
Sbjct: 396 WLSGETWRLEVFEQGGDIYCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 455

Query: 449 KTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           K M +   GLD ++    V                                         
Sbjct: 456 KAMGALDMGLDEEELQPLVNQ--------------------------------------- 476

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             WR  +  ++  W  + +    V +       R    V  L++        I LPS R+
Sbjct: 477 --WRMANPHIVAFWWVIDKASKEVYE------TREPQKVGNLLLYYQAGMFFIALPSGRK 528

Query: 568 LVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           L Y   + + +                +  R  TYG KL ENIVQ I+RD+L  GM    
Sbjct: 529 LAYVKPRMELNAFGKPGLTYEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQ 588

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           K   DIVL VHDE V E  +    SV  +C L    P WA+GLPL+A+GY  + Y+K
Sbjct: 589 KQELDIVLHVHDEAVVEVKEGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 231/716 (32%), Positives = 338/716 (47%), Gaps = 105/716 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LF+D+ET SP  L K GV+ YAE     + L  Y+ D  PVK+ D      +P++++
Sbjct: 1   MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS----------KRWICTSVLARTNGLPSS 108
           + L D  V   A N+ FER+     L    P            +W CT V +   GLP S
Sbjct: 61  EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLF 159
           L+     L+    + K   GK LI RFC         +G + + P     A+    W+ F
Sbjct: 121 LEQVATVLDLP--VRKDSAGKKLITRFCTPARPSVLNQGEMRNLP-----ASDPDGWEQF 173

Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
             Y +RDVE    +  RL   P+ + E   + LDQ IND G R+D  LV    +   Q R
Sbjct: 174 ISYNRRDVEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHR 233

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
                   +LT   + +      L+ +L    G  L  +++  + + L  +  T   +++
Sbjct: 234 ATTLARAQELTG--LENPNSPIQLKDWL-TAHGTPLQSLTKDEVAAALDTA--TGEVREV 288

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---- 333
           +  R   + S++ K  T+      DGR RG LQFYGA RTGR++G + Q QNLPR     
Sbjct: 289 LQLRGELAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD 348

Query: 334 --ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             E  + + T   +A+    +++ D L   S  +R+  + ++G + VVAD + IEARV+A
Sbjct: 349 LCEARDLVRTGEFEAVELLYDSVPDTL---SQLIRTAFVPADGHRFVVADFSAIEARVIA 405

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
           W+AGE   ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    
Sbjct: 406 WLAGEATTLQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGAL 465

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K M                                         A++  L  +  + +  
Sbjct: 466 KAMG----------------------------------------ALRMGLAESELQPLVD 485

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           AWRA +  V+QLW D+    A  ++   +IS R+   V  L        + + LPS RRL
Sbjct: 486 AWRAANPNVVQLWADIN---AAAIE---AISTRQPTGVGALTFTVESGIMFVRLPSGRRL 539

Query: 569 VYSDVK-GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K G+  +  TA +        +  +  TYGGKLTENIVQA++RD+L  GM    +
Sbjct: 540 AYVKPKLGENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDR 599

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            GY IV+ VHDEIV ET      +V  +C LM   P WA GLPL A+GY    Y K
Sbjct: 600 AGYRIVMHVHDEIVVETATA---TVDEICELMATAPDWAAGLPLAADGYACDFYMK 652


>gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 567

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 286/571 (50%), Gaps = 58/571 (10%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAFAN----------------------------------------GEDIYV 410
           W+AGE  K+ AF +                                        G+DIY 
Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             YA +F      V+K+QR IGKV ELALGY GG   F   A+   +DL+  ++      
Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPP 362

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                E  E+      +Q P F + D+    AC++ K+AWR  H  +   WK L   FA 
Sbjct: 363 LLLQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAA 418

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--AT 584
                   +A     +    M+  +  + + LPS R L Y+    D  G  SY+ T   T
Sbjct: 419 TDAIRHPETAHTCCGI---TMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE+++E  D   F+ 
Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 222/711 (31%), Positives = 343/711 (48%), Gaps = 96/711 (13%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS----DLLQ 59
           +DIET S   + + GV+AYA      I L  Y +D + VK+ D T+  A P     D  +
Sbjct: 5   VDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPDFWE 64

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L    V+  A+N+ FER      LG  +P ++W CT+V A T GLP +L     AL   
Sbjct: 65  GLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEALGLP 124

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDV-- 167
           E   K + GK+LI  FCK      P   T+ N +++          WQLF EY ++DV  
Sbjct: 125 EDKQKDKIGKSLIQYFCK------PCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVA 178

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           EAT     ++ P++  E++LW LDQ IND G R+D+DL  K+ +     +++L ++  KL
Sbjct: 179 EATIREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKL 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN------R 281
           T   + +      L+M+ F+  G+D+  +++ ++  I +     +   D++        R
Sbjct: 239 TG--LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIR 296

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                +++ K   +  AV  DG LRG LQFYGA+RTGRW+G + Q  NLP+ +  +  L 
Sbjct: 297 KELGKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLA 356

Query: 342 QTIQALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           + +      +T+       P  + S  +R+  I S G + VV+D + IEARV+AW+A E 
Sbjct: 357 RDLVKQEDFDTLELLFEGIPF-VFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEK 415

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASH 454
           W++  F     IY  + A+ F+ PI+ + K    R  GKV ELALGY GG    K M   
Sbjct: 416 WRLNVFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAM--- 472

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                           T  D            D+ P              ++   WR   
Sbjct: 473 ------------DKAGTIPD------------DEIP--------------MIIANWRKAS 494

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV- 573
             + +LW++        ++E  +I  +       L      R + I LPS R+L Y D  
Sbjct: 495 PNICKLWRNAEAAARAAIEERRTIKLKH-----GLSFSYINRILFIGLPSGRKLAYYDTR 549

Query: 574 -------KGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
                  K   +Y  ++  T +  R +T+GGKL ENIVQA +RD L   M+  +  GY I
Sbjct: 550 IEDDEKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQI 609

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ VHDEI+ + P+T   ++  + ++M +   WA+ LPL+ +GYE   Y+K
Sbjct: 610 VMHVHDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 230/704 (32%), Positives = 342/704 (48%), Gaps = 87/704 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           S L IDIET S   L + GV+AYAE     I L AYA+DDE V + D  +   +P+ +L+
Sbjct: 8   SVLSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLK 67

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D ++M  A+N+ FER      L   +P+++W C+SV A T GLP  L      LN  
Sbjct: 68  ALIDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLG 127

Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175
           +   K   GKALI  F   CK +  +         H ++ W  +  YC++DVE  R L K
Sbjct: 128 DQ--KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRK 185

Query: 176 RLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           RL   P+ + E+ LW LDQ +ND G RID DLV +  +L A+E+  L E+  ++T   + 
Sbjct: 186 RLASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LE 243

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      LR +L    GI+   +++  +  +L       + + LIL ++ S  +++ K  
Sbjct: 244 NPNSVAQLRDWL-TSRGIETSGLAKKQVSDLLQTDLPGDVRRVLILRQMMSK-TSVKKYE 301

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--E 351
            +  ++  DG +RG LQFYGA+RTGRW+G + Q  NLP+    +  L +  Q +  G  E
Sbjct: 302 AMDRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGD--LDEARQLVKTGNYE 359

Query: 352 TIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
            I    G    L S   R+  I   G + VV+D + IEARV+AW+AGE W++K F     
Sbjct: 360 LITTLYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGK 419

Query: 408 IYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           IY  + ++ F  PI++++K    R  GK+ ELALGY GGAK   T      + L      
Sbjct: 420 IYEASASQMFGVPIEEITKASPLRQKGKIAELALGY-GGAKGALTQMGALEMGLS----- 473

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                               +D+ P                 KAWR  +  ++ LW DL 
Sbjct: 474 --------------------EDELPALV--------------KAWRKANPNIVNLWYDLE 499

Query: 526 EGFACVVQEGGSISAR---RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------- 573
           +     V+    ++A+   +      L+  R        LPS R L Y            
Sbjct: 500 KSAFEAVKWQKVVTAKSGIQFYGGSGLLRAR--------LPSGRSLSYVRPQIGIDERFG 551

Query: 574 KGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           + + +Y  +   + Q  R  TYGGK+ EN+VQAI+RD L E M      GY I   VHDE
Sbjct: 552 REEITYEGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDE 611

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +V E P+    +   +  +M++   WA GLP+ A+ +E   Y+K
Sbjct: 612 VVIEVPNE-QDAKADIERIMSEPIDWAPGLPMNADSFETGYYKK 654


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 230/713 (32%), Positives = 337/713 (47%), Gaps = 102/713 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET     + KVG + Y E     I L AYA++DEPV++ D  +   +P  + 
Sbjct: 1   MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  ++  A N+ FE    KK L   I ++ W CT V +   GLP SL      L F
Sbjct: 61  TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVE 168
            E   KM+EGKALI  FCK      P   T++N         H  + W++F +Y K+DVE
Sbjct: 121 EEDKQKMKEGKALIQYFCK------PCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVE 174

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             R +  +L   P ++ E+ LW LDQ INDRG   D++L+ K  E      K+L ++  +
Sbjct: 175 VERAIRNKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATE 234

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT G+   +  T  L+ ++    G ++  +++ ++ +++  S   ++ K L L +L +  
Sbjct: 235 LT-GLSNPNSPT-QLKRWIGERVGHEVKSLTKDSIPTLIKESKDEKVKKILELRQLMAK- 291

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           ++I K  T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +  L      
Sbjct: 292 TSIKKYETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPD--LDDARNF 349

Query: 347 LNRGE---------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           +  G+         +I D L   S  +R+  I   G + +VAD + IEARV+AW AGE W
Sbjct: 350 IRTGQFDKVEFLYDSIPDTL---SQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQW 406

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           ++  F N  DIY  + +K F  P++K  ++   R  GK+ ELALGY G      +M    
Sbjct: 407 RLDVFNNNGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKK 466

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
            +   +    VK      DW  A  H     W  D+                  KKA R 
Sbjct: 467 NIPEDELPGLVK------DWRDASPHITKFWWDVDK----------------AAKKAIRE 504

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +   VLQ       G   +   G                      + I LPS R+L Y  
Sbjct: 505 RTTVVLQF------GLKFIYDPGV---------------------LFIQLPSGRKLAYIR 537

Query: 573 VKGD--------CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
            K +         +Y  L   + Q     TYG K+ ENIVQA +RD L   M+     G+
Sbjct: 538 PKIEPGPYDKPIITYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGF 597

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            IV+ VHDE++ + P     +V  +C +  +   WA GLPLKA+GYE   Y K
Sbjct: 598 HIVMHVHDELICDVPKGK-GTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 223/701 (31%), Positives = 341/701 (48%), Gaps = 85/701 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M KL ID+ET S   L K GV+ YAE     I L AY+ +D  VK+ D      +P ++L
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DE V   A N+ FER+   + LG  +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   KM EGKALI  F   CK +  +       ++H ++ W  F EY +RDVE    + 
Sbjct: 121 DKQ--KMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRID---LDLVLKLQELIAQERKKLDEDIVKLTD 229
           K+L   P+S  E + + +DQ INDRG  ID   +D  +K   ++ +E     +  ++LT 
Sbjct: 179 KKLSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENM---DRAIELTG 235

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             + +      L+ +L    G+++  +++  ++S L   N     K+++  R   S S++
Sbjct: 236 --LENPNSPLQLKEWLNK-KGLEIDSLAKKDVESALK--NTEGDIKEVLELRQELSKSSV 290

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K + +      D R RG +QFYGA+RTGR+SG + Q QNL R    +  L +++     
Sbjct: 291 RKYDAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRD 350

Query: 350 GETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            ET+      P  + S  +R+  IA  G + +++D + IEARVLAW+AGE W + AF NG
Sbjct: 351 YETMEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENG 410

Query: 406 EDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           EDIY  T ++ F  P++K  V+   R  GK+  LA GYQG     K M    G+++    
Sbjct: 411 EDIYCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG---GIEMGLSE 467

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
             ++S                                     +  +WR  +  ++ LW D
Sbjct: 468 DELQS-------------------------------------IVDSWREANPNIVSLWWD 490

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +      VV+       R       LV+   K  + I LPS RRL Y   K   +     
Sbjct: 491 IDSVVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGE 544

Query: 584 T---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
           +         ++  +  +YGGK  ENIVQAI+RDIL E M    K G++IV+ +HDE+V 
Sbjct: 545 SIVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVI 604

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+  +    +  + SL+   PSWA GL L A+G+E++ Y+K
Sbjct: 605 ESDSSSIEEINQIMSLV---PSWAPGLILDADGFESEFYKK 642


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 226/700 (32%), Positives = 345/700 (49%), Gaps = 82/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D  PV++ D      +P ++ 
Sbjct: 1   MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q + D  V   A N+ FERI   K  GI +    W CT V +   GLP SL+ A +    
Sbjct: 61  QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELF 174
            +   K+ +GK LI  F   CK ++ +         H  + W  F  Y  RDVE    + 
Sbjct: 121 DKK--KLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+ + E + ++LDQ INDRG ++DL+LV K  +   + R++L   + +LTD  +
Sbjct: 179 EKLQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + + ++K++L  +    L++ L L +L +  S++ K 
Sbjct: 237 DNPNSVVQMKSWLSE-KGLETDSLDKASVKALLKEAP-EHLSEVLELRQLLAK-SSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-- 350
             +  AV +DGR RG LQFYGA+RTGR++G + Q QNLP+   S+  L Q  + +  G  
Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSD--LEQARRLVRGGHF 351

Query: 351 ---ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
              E + D + G+ S+ +R+  +   G K +VAD + IEARV+AW+AGE W+ + FA   
Sbjct: 352 DALEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            IY  + ++ F  P+++V+K    R  GK+ ELALGY G     K M +   LD+    +
Sbjct: 412 KIYEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGA---LDMGLTEE 468

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
            +K                                      +  AWR  +  +++LW D+
Sbjct: 469 ELKP-------------------------------------LVYAWRNANPNIVRLWWDV 491

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT-- 582
                  V E       R+    R  M      + I LPS R+L Y   +   +   +  
Sbjct: 492 DRAVKEAVTERCRTETHRIRFEYRSGM------LLIWLPSGRQLTYVKPRMGINSFGSEA 545

Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                  AT +  R  +YG K  ENIVQAISRD+LC  M+N  ++G +IV+ VHDE+V E
Sbjct: 546 VTYEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLE 605

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P      V  +C LM + P WA GL L+A+G+E   Y+K
Sbjct: 606 VPLE--ICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score =  303 bits (775), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 231/711 (32%), Positives = 336/711 (47%), Gaps = 93/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIE+ SP  L K GV+ YAE     + L  Y+ D  PVK+ D     +MP ++L
Sbjct: 1   MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
             L D +V+  AHN+ FER+     L            +  ++W CT + +   GLP SL
Sbjct: 61  AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165
                 L     + K   GK LI +FC  +  S      R N   A    W  F +Y +R
Sbjct: 121 DAVAAVLKLD--VQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             KLT   + +      L+ +L +  G +L  +++  + + L  +  T + K+++  R  
Sbjct: 239 AQKLTG--LDNLNSPIQLKQWL-VTRGCELESLAKAEVDAALDTA--TGVVKEVLELRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-------QERS 336
            + S++ K   +     +DGR RG +QFYGA RTGR++G + Q QNLPR       Q RS
Sbjct: 294 LAKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARS 353

Query: 337 EEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
             + T  + AL    E++ D L   S  +R+  I S G + +VAD + IEARV+AW+AGE
Sbjct: 354 L-VQTGNLDALELLYESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
              + AF  G+D+Y  T ++ F+ P++K  ++ E R  GK+  LA GY G     K M +
Sbjct: 410 TTTLAAFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMGA 469

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                   F+  +              H L                    + +  AWR  
Sbjct: 470 --------FTMGLA------------EHEL--------------------KPIVDAWRQA 489

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  ++QLW D+ +          +IS+R+   +  L        + I LPS RRL Y   
Sbjct: 490 NPHIVQLWADVEQAAIA------AISSRQPIRLRNLRFSVESGILFIELPSGRRLAYVQP 543

Query: 574 K-GDCSYLNTATSQLMRE--------RTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + G+  +  T+ +              TYGGKL ENIVQAI+RD+L  GM    K G+ I
Sbjct: 544 RLGENRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRI 603

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ VHDEIV + P    F+V   C LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 604 VMHVHDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 232/716 (32%), Positives = 334/716 (46%), Gaps = 105/716 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LFIDIET SP  L   GV+ YA+     + L  Y+ D  PV++ D      +P  +L
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS----------KRWICTSVLARTNGLPSS 108
             L D  V+  A N+ FERI     L    P            +W CT V +   GLP S
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCK---------GSIDSPPYDCTRANHVQAWQLF 159
           L      L+    + K   GK LI +FC          G + +PP     A+    W+ F
Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPP-----ASDPDGWEQF 173

Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
             Y +RDVE    +  RL   PL   E D + LDQ +ND G R+D  LV        Q R
Sbjct: 174 ISYNRRDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHR 233

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
                   +LT   + +      L+ +L    G  L  +++  + + L  +  T   +++
Sbjct: 234 ATTLARAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTA--TGQVREV 288

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---- 333
           +L R   + S++ K   +      DGR RG LQFYGA RTGR++G + Q QNLPR     
Sbjct: 289 LLLRGELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD 348

Query: 334 --ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             E    + T   +A+    +++ D L   S  +R+  I ++G + VVAD + IEARV+A
Sbjct: 349 LAEARSLVRTGDFEAVELLYDSVPDTL---SQLIRTAFIPADGHRFVVADFSAIEARVIA 405

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
           W+AGE   ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    
Sbjct: 406 WLAGETTTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGAL 465

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K M                                         A++  L  +  + +  
Sbjct: 466 KAMG----------------------------------------ALRMGLAESELQPLVD 485

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           AWRA +  V+QLW D+    A  ++   +IS R+  +V  L        + I LPS RRL
Sbjct: 486 AWRAANPSVVQLWADIN---AAAIE---TISTRQPTSVGALTFTVESGIMFIRLPSGRRL 539

Query: 569 VYSDVK-GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K G+  +  T+ +        +  +  TYGGKLTENIVQA++RD+L   M    +
Sbjct: 540 AYVKPKLGENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAE 599

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            G+ IV+ VHDEIV ET      +V  +C LM+  P WA GLPL+A+GY    Y K
Sbjct: 600 AGHRIVMHVHDEIVVETATA---TVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 234/716 (32%), Positives = 331/716 (46%), Gaps = 105/716 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LFIDIET SP  L   GV+ YA+     + L  Y+ D  PV++ D      +P  +L
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS----------KRWICTSVLARTNGLPSS 108
             L D  V+  A N+ FERI     L    P            +W CT V +   GLP S
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCK---------GSIDSPPYDCTRANHVQAWQLF 159
           L      L+    + K   GK LI +FC          G + +PP     A+    W+ F
Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPP-----ASDPDGWEQF 173

Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
             Y +RDVE    +  RL   PL   E D + LDQ +ND G R+D  LV        Q R
Sbjct: 174 ISYNRRDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHR 233

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
                   +LT   + +      L+ +L    G  L  +++  + + L  +  T   +++
Sbjct: 234 ATTLARAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTA--TGQVREV 288

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---- 333
           +L R   + S++ K   +      DGR RG LQFYGA RTGR++G + Q QNLPR     
Sbjct: 289 LLLRGELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD 348

Query: 334 --ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             E    + T    A+    +++ D L   S  +R+  I ++G + VVAD + IEARV+A
Sbjct: 349 LAEARSLVRTGNYDAVELLYDSVPDTL---SQLIRTAFIPADGHRFVVADFSAIEARVIA 405

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
           W+AGE   ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    
Sbjct: 406 WLAGEATTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGAL 465

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K M                                         A++  L  +  + +  
Sbjct: 466 KAMG----------------------------------------ALRMGLAESELQPLVD 485

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           AWRA +  V+QLW D+    A  ++   +IS R   +V  L        + I LPS RRL
Sbjct: 486 AWRAANPNVVQLWADIN---AAAIE---AISTRLPTSVGALTFTVESGIMFIRLPSGRRL 539

Query: 569 VYSDVK-GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K G+  +  TA +        +  +  TYGGKLTENIVQA++RD+L  GM    +
Sbjct: 540 AYVKPKLGENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDR 599

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            G+ IV+ VHDEIV ET      +V  +C LM   P WA GLPL A+GY    Y K
Sbjct: 600 AGHRIVMHVHDEIVVETATA---TVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 232/712 (32%), Positives = 333/712 (46%), Gaps = 95/712 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIET SP  L K GV+ Y E     + L +Y+ D  PV++ D     +MP ++L
Sbjct: 1   MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL----------GIDIPSKRWICTSVLARTNGLPSS 108
             L D  V+  AHN+ FER+     L          G   P ++W CT V +   GLP S
Sbjct: 61  AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDP-RQWRCTMVWSAYLGLPMS 119

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCK 164
           L      L     + K   G+ LI +FC  +  S        N   A    W  F +Y +
Sbjct: 120 LDAIAAVLKLD--VQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNR 177

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE  + +  RL   P+ + E D + LDQ IND G  +D  LV     +    R     
Sbjct: 178 RDVEVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLA 237

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              KLT   + +      L+ +L    G +L  +++  + S L  +  T   K+++  R 
Sbjct: 238 RAQKLTG--LDNPNSPIQLKQWL-ATRGCELESLAKAEVDSALDTA--TGAVKEVLELRG 292

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-------QER 335
             + S++ K   +     SDGR RG +QFYGA RTGR++G + Q QNLPR       Q R
Sbjct: 293 DLAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQAR 352

Query: 336 SEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
           +  + T  + AL    E++ D L   S  +R+  I S G + +VAD + IEARV+AW+AG
Sbjct: 353 TL-VRTGNLDALELLYESVPDTL---SQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAG 408

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           E   ++AF  G+D+Y  T ++ F  P++K  V+ E R  GK+  LA GY G     K M 
Sbjct: 409 ETSTLEAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG 468

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +   L++      +K                                      +  AWR 
Sbjct: 469 A---LNMGLAEHELKP-------------------------------------IVDAWRQ 488

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            +  ++ LW D+ E          +IS+R+   +  L          I LPS RRL Y  
Sbjct: 489 ANPHIVGLWADVEEAAIA------AISSRQPIRLRNLRFSVESGIFFIELPSGRRLAYVQ 542

Query: 573 VK-GDCSYLNTATSQLMRE--------RTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
            + G+  +  T+ +              TYGGKL ENIVQAI+RD+L  GM    K G+ 
Sbjct: 543 PRLGENRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQ 602

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV+ VHDEIV + P+   F+V   C+LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 603 IVMHVHDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
 gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
          Length = 662

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 235/725 (32%), Positives = 341/725 (47%), Gaps = 114/725 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ Y       I L  Y+ D  PVK+ D      +P D+L
Sbjct: 1   MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98
             L D+TV+  A N+ FER+   + L     G+D               +  + W C+ V
Sbjct: 61  DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA--- 155
            A T GLP SLK     L  ++   KM+EGKALI  F      S P   T+AN  +    
Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQ--KMDEGKALIKYF------SVPCAPTKANGGRTRNL 172

Query: 156 -------WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                  W  F +Y +RDVE    + ++L   P+ D   D + +DQ INDRG RID+DLV
Sbjct: 173 PSDDPGKWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLV 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            K  ++  + R +L E +  +T+  + +      ++ +L    G+++  + +  + ++L 
Sbjct: 233 EKAIDMDTRSRSELTEKMQAITN--LENPNSVQQMKQWLS-DNGMEVDSLGKKAVTALLK 289

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            +   +L + L L R   + S++ K  T+  AV SD R RG   FYGA+RTGRW+G + Q
Sbjct: 290 TAP-PELTEVLEL-RQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQ 347

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLA 382
            QNLP+    +    + +      E +     D     S  +R+  I  +G +  VAD +
Sbjct: 348 LQNLPQNHLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFS 407

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALG 440
            IEARV+AW AGE WK  AFANGEDIY +T  + F+ P+ K  V+ E RA GK+ ELA G
Sbjct: 408 AIEARVIAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACG 467

Query: 441 YQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
           Y G     K M +   GL                            +D+ P+        
Sbjct: 468 YGGSTGALKAMGALEMGLS---------------------------EDELPD-------- 492

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                 +  +WR  +Q +++ W D+ +     V+        +   + RL        + 
Sbjct: 493 ------IVSSWRDANQQIVKFWWDVDKAVMAAVKN------HKTTRLGRLAFFWQAGMLF 540

Query: 560 IVLPSSRRLVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDIL 610
           I LPS R L Y   K       G+C +Y     T +  R  +YG K  ENIVQA SRDIL
Sbjct: 541 ITLPSGRNLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDIL 600

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
           C  MK       D+ + +HDE+V E    P  S+ TLC  M + P+WA GL L+A+GY  
Sbjct: 601 CNSMKMLRH--CDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVC 656

Query: 671 KRYRK 675
             Y+K
Sbjct: 657 DFYKK 661


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 218/710 (30%), Positives = 342/710 (48%), Gaps = 102/710 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP K+ D      MP +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D++V+  A N+ FER    +  G+ +  + W CT+V A    LP SL+    ALN 
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
            +   KM EGK LI  FC       P   T+AN            + W+LF  YC RDV+
Sbjct: 121 DKK--KMSEGKDLIRYFCM------PCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVD 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
             +++  +L   P+ D E++L+ +DQ INDRG  +D +L+   +    L  +   K   +
Sbjct: 173 VEKQIRNKLAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYE 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL--SHSNITQLAKDLILNR 281
           I  L +           L+ +L    GI++  +++  ++ ++  +   ++++ K     R
Sbjct: 233 ISGLEN-----PNSVSQLKDWLNE-KGIEVDSLAKAAVEELVEKTEGEVSEMMK----LR 282

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L+ S +++ K   +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L 
Sbjct: 283 LSMSKTSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELA 342

Query: 342 QTIQALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++I    R + +     + P  L S+ +R+  +A  G + +V+D + IEARV+ ++AGE 
Sbjct: 343 RSIVKEGRYDLVELLYDSTPEVL-SELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEG 401

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASH 454
           W ++ F     IY  T +K F+ PI++++K    RA GKV  LA  Y G      +M + 
Sbjct: 402 WVMEEFRGAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL 461

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                                F  +++L G       ++WR  +
Sbjct: 462 ------------------------------------NFVEEEELKGLV-----QSWRTAN 480

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             ++  W ++       V+E      R++  V R+ +      + I LPS R L Y   +
Sbjct: 481 PHIVNYWYEIDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPR 534

Query: 575 --------GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
                      SY    T+ +  R  +YG K  ENIVQA +RD+L E M    K G+DIV
Sbjct: 535 MTVNRFGSESVSYEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIV 594

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +HDE+V E P+    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 595 CHIHDEVVLEVPEGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 233/709 (32%), Positives = 340/709 (47%), Gaps = 96/709 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+DD+PVK+ D  +   +P ++L
Sbjct: 1   MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K   + +   +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
           S    K + GKALI  F      S P   T+AN            + W+ F  YC +DVE
Sbjct: 121 SAQ--KDKAGKALIRYF------SVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVE 172

Query: 169 ATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             R +  R+      + E  LW LDQ INDRG RID+DLV        Q +  L  +  K
Sbjct: 173 VERAIKNRISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKK 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +   T  L+ +L    G+ +  +++  ++ ++ ++N   + + L L R   + 
Sbjct: 233 LTG--LPNPNSTAQLKKWLEE-KGLTISSLAKDKIEELIENTNDETVHRVLRL-RQEMAK 288

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP Q + E++   T + 
Sbjct: 289 TSVKKYLAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLP-QNKIEDL--DTARN 345

Query: 347 LNRG---ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           L +G   E I    G    + S  VR+  I S G +  V+D + IEARV+AW+AGE+W++
Sbjct: 346 LLKGGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRL 405

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
           + F     IY  + A+ F  P++ ++K    R  GKV ELALGYQGG      M + + G
Sbjct: 406 EVFNTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALNMG 465

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L                            + + PE                KAWR  ++ 
Sbjct: 466 L---------------------------AEGELPELV--------------KAWRTANKK 484

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +++ W D+       V+E   +  +       L        + + LPS RRL Y+  K +
Sbjct: 485 IVKFWYDVEAAAIKAVKERKPVKLQH-----GLTFLYESGILFVQLPSGRRLAYAKPKLE 539

Query: 577 ---------CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                     +Y     S +  R  TYGGKL ENIVQA +RD L   +      GY  V+
Sbjct: 540 LDERFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVM 599

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDE V + P      +  + ++M +  SWAKGLPL A+G+    Y+K
Sbjct: 600 HVHDEAVLDVPRGKN-ELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 13/447 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  R  +S ++  K   L + V
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 365 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 424

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELA 438
            YAKA+   +++V+K+QR IGKV+ELA
Sbjct: 425 AYAKAYGIEVERVTKDQRQIGKVLELA 451



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 11/249 (4%)

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
           G ++    GY GG   F T A    LDL + +         +   +A+S +     +   
Sbjct: 732 GHLIVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKST 791

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
           + + +++   AC+ +K+ WR  H      W +L       +      + ++      L +
Sbjct: 792 YGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTAIA-----TPQKTLYCGYLKI 845

Query: 552 RRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAIS 606
           RR    + I LPS R + Y      KG+ +Y+  N+ + +  R +TYGGKL EN+ QA +
Sbjct: 846 RRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAA 905

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   M      GY IVLTVHDEI+SE PD+P +S   +  L+   P WA  +PL A 
Sbjct: 906 RDVLAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAG 965

Query: 667 GYEAKRYRK 675
           G+E+ RYRK
Sbjct: 966 GFESYRYRK 974


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  300 bits (768), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 217/710 (30%), Positives = 342/710 (48%), Gaps = 102/710 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP ++ D      MP +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D++V+  A N+ FER    +  G+ +  + W CT+V A    LP SL+    ALN 
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
            +   KM EGK LI  FC       P   T+AN            + W+LF  YC RDV+
Sbjct: 121 DKK--KMSEGKDLIRYFCM------PCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVD 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
             +++  +L   P+ D E++L+ +DQ INDRG  +D +L+   +    L  +   K   +
Sbjct: 173 VEKQIRNKLAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYE 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL--SHSNITQLAKDLILNR 281
           I  L +           L+ +L    GI++  +++  ++ ++  +   I+++ K     R
Sbjct: 233 ISGLEN-----PNSVSQLKEWLNE-KGIEVDSLAKAAVEELVEKTEGEISEMMK----LR 282

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L+ S +++ K   +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L 
Sbjct: 283 LSMSKTSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELA 342

Query: 342 QTIQALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++I    R + +     + P  + S+ +R+  +A  G + +V+D + IEARV+ ++AGE 
Sbjct: 343 RSIVKEGRYDLVELLYDSTP-DVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEG 401

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASH 454
           W ++ F     IY  T +K F+ PI++++K    RA GKV  LA  Y G      +M + 
Sbjct: 402 WVMEEFRGAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL 461

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                                F  +++L G       ++WR  +
Sbjct: 462 ------------------------------------NFVEEEELKGLV-----QSWRTAN 480

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             ++  W ++       V+E      R++  V R+ +      + I LPS R L Y   +
Sbjct: 481 PHIVNYWYEIDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPR 534

Query: 575 --------GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
                      SY    T+ +  R  +YG K  ENIVQA +RD+L E M    K G+DIV
Sbjct: 535 MTVNRFGSESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIV 594

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +HDE+V E P+    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 595 CHIHDEVVLEVPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 227/710 (31%), Positives = 332/710 (46%), Gaps = 97/710 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  Y+ D   VK+ D      +P +++
Sbjct: 1   MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D++V+  A N+ FERI   K LG+     +  K W CT + A T GLP SL+    
Sbjct: 61  NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCK 164
            L F +   K+ +GK LI  FC       P   T++N           ++ W++F  Y K
Sbjct: 121 VLGFKKQ--KLSQGKNLIKYFC------IPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNK 172

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  +L   P+S  E   + LDQ IND G  +D+D V   ++ I+ + K   E
Sbjct: 173 RDVETEMAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFV---RQAISCDEKFKAE 229

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +I K  +     +  + A      L  G+    +S+  +  +L  S+        I  +L
Sbjct: 230 NIKKAKELTGLENPNSPAQLKDWLLKQGMKTDSLSKAVVSELLQDSDGEIHEALSIRQQL 289

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           A S  ++ K  ++   V SD R RG +QFYGA+RTGR+SG + Q QNLP+    +  L Q
Sbjct: 290 AKS--SVKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPD--LKQ 345

Query: 343 TIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
               +  G   A  L       + S+ +R+  I   G + +VAD + IEARV+AW+AGE 
Sbjct: 346 ARSLVKSGNFTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGER 405

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           W+I  FA G DIY  + ++ FN P+ K  ++   R  GK+ ELALGY G     K M   
Sbjct: 406 WRIDVFAGGGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMG-- 463

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                                 A++  L+    + +  AWR  +
Sbjct: 464 --------------------------------------AIQMGLVEDELKPIVDAWRNSN 485

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDV 573
             +  LW  +      VV+    I    +       +      + I LPS RRL Y   +
Sbjct: 486 PNITSLWWRIDRAVKTVVKTKQPIEIYGIG------IFYQSGILFIKLPSGRRLAYVKPL 539

Query: 574 KGDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
            G+  +   +        T +  R  +YG K  ENIVQAISRDIL E M     + + IV
Sbjct: 540 IGENRFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIV 599

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + VHDE+V E P+    SV  +C +M++ P+WAKGL L A+GYE + Y+K
Sbjct: 600 MHVHDEVVIEAPNK-VSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 236/721 (32%), Positives = 340/721 (47%), Gaps = 128/721 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLP+SL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRD 166
             ++   K   GK LI  F      S P   T+AN  +           WQ+F  YC +D
Sbjct: 119 KLAQE--KDAAGKNLIKYF------SVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQD 170

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           V     + ++L  +P+ D E D ++ DQ INDRG  +D +LV         + + L  ++
Sbjct: 171 VVVEMAIAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGEL 230

Query: 225 VKLTDGIIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKD 276
             LT     +SR      L+ + +   G+   D+      +EG LK +L           
Sbjct: 231 KALTGLDNPNSRAQLLPWLKEHGYSANGLTKADVEQELKKAEGELKRVLEL--------- 281

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ--- 333
               +L ++ S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    
Sbjct: 282 ----KLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIK 337

Query: 334 ---ERSEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVL 389
              +  E +  + I A+   E + D L       VR+ ++A +G    V+D + IEARV+
Sbjct: 338 DLDDAREYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVI 394

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           AW AGE W++  F+    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K
Sbjct: 395 AWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALK 454

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            M +         +  VK                           +++L G     V   
Sbjct: 455 QMGA--------LNMGVK---------------------------EEELQG-----VVDD 474

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  ++ ++Q WKD+    A +     +I +R    + ++  R  K  + I LPS R L 
Sbjct: 475 WRRANKKIVQFWKDVQR--AAI----KAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLA 528

Query: 570 YSDVK---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           Y+  K               GD +Y          + TYGGKL ENIVQA +RDIL E +
Sbjct: 529 YARAKVEPGDYGDKIIYEGQGDRAYFTA-------QETYGGKLVENIVQATARDILAEAL 581

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                 GYD+V  VHDE + E        +  +  LM++ P WA+GLPL +EGY  K Y 
Sbjct: 582 LRIEAAGYDVVFHVHDEAIIEGSG---LIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYM 638

Query: 675 K 675
           K
Sbjct: 639 K 639


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 220/701 (31%), Positives = 332/701 (47%), Gaps = 92/701 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S + +   G +AY  +E   I L AYA+DDEPVK+ D T    +P  +L+ L
Sbjct: 6   LRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLT-IDEIPDTVLEDL 64

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+  AHN+ FER    K     +P ++W CT V     GLP+SL     AL  ++ 
Sbjct: 65  NNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLAQE 124

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEATR 171
             K  EGKALI  FC       P   T+AN         H  + W  F EYC++DV   R
Sbjct: 125 --KDNEGKALIRYFCM------PCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVER 176

Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            + K++   P  + E+  W LDQ I D+G RID+DLV     +  QER +    + K   
Sbjct: 177 SIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVK--HAIACQERYQ--ASLSKKAK 232

Query: 230 GI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           G+  + +      L+ +L  + G  +  +++ ++  +L+  ++ +  ++++L R   S +
Sbjct: 233 GLTGLENPNSVQQLKDWLADM-GYPVSSLNKDSVSELLADEDLDEDVREMLLLRQEMSKT 291

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +I K   +  A   DGR+RG LQF GA+RTGRW+G + Q QNLPR    +  + +  + L
Sbjct: 292 SIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKD--IAEVRKDL 349

Query: 348 NRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
             G+  A  +       + S  +R+  IA +G    + D + IEARV+AW+AGE W++  
Sbjct: 350 KAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDV 409

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F +   IY  + ++ F+ PI++V K  R  GKV ELALGY GG      M          
Sbjct: 410 FNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG--------- 460

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  L     + +  AWR     +  LW
Sbjct: 461 -------------------------------ALEMGLKENELQGIVDAWRKASPAITSLW 489

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------- 574
           + + +          +IS R+      L        + I LPS R L Y   K       
Sbjct: 490 RGVEKHAKL------AISTRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYG 543

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
               Y         ++ TYGGKL ENIVQAI+RD L   ++     G D V+ VHDE ++
Sbjct: 544 PQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAIT 603

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E  ++   SV  L +++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 604 EVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 336/716 (46%), Gaps = 100/716 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + ID+ETRS + + K GV+AYA+     ITL + + DD  V+L+D      +P D+L
Sbjct: 1   MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKK------------------TLGIDIPSKRWICTSVLA 100
             L DE+V+  A N  FER+   +                  T+G  +    W CT +  
Sbjct: 61  TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC--KGSIDSPPYDCTRANHVQAWQL 158
           RT GL S+L +A  AL   +   KM EGKALI  FC    ++D  P   + A+  + W+ 
Sbjct: 121 RTLGLSSTLASAGAALKLEQQ--KMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWET 178

Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           F  Y K+DVEA   + +RL   P+ D   + + LDQ INDRG R+D++LV     L AQ 
Sbjct: 179 FKAYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQA 238

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           +  L  ++ +LT   I +    Y L  +L    G     + +  +K +L    +    K 
Sbjct: 239 KATLSSEMRRLTG--IENPNSVYQLLEWLGE-QGYKSDCLDKAAVKELLK--TVKDPVKS 293

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  RL  S S++ K   +  A  SD R RG   FYGASRTGRW+G + Q QNLP+    
Sbjct: 294 VLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIP 353

Query: 337 EEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           +  LT+    +  G          D     S  +R+  +   G K ++AD + IEARV+A
Sbjct: 354 D--LTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIA 411

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
           W+AGE W++ AFANG DIY  + +K F  P+ K  V+ E R  GKV ELA GY G     
Sbjct: 412 WLAGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAM 471

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K M    G  L      +K   T  DW  A  + +             K   T  + VKK
Sbjct: 472 KAMG---GDALNLSDSELKQIVT--DWRDASPNIV-------------KFWWTVDDAVKK 513

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           A                            I  +       L      + + I LPS R+L
Sbjct: 514 A----------------------------IKQKITTETHGLQFSYQSKMLFITLPSGRKL 545

Query: 569 VYSDVK--------GDCSYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y+  +           +Y+   A+ +  R  +YG K  ENIVQA++RD+L   M+  T 
Sbjct: 546 CYAHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQ--TM 603

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               IV  +HDE++ E       S+  +C  M + P+WA+GL L+A+GYE + YRK
Sbjct: 604 RCCFIVGHIHDEMIIEADRR--MSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 239/719 (33%), Positives = 342/719 (47%), Gaps = 111/719 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPS--D 56
           M  L ID+ET     +  VG + Y E     I L AYA+DDEPVK+ D      +P   +
Sbjct: 1   MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
              Y     V+  A N+ FER   K    G+      W CT V A T GLPSSL     A
Sbjct: 61  FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKR 165
           L F E   KM+EGKALI  FCK      P   T+ N           ++ W+ F EYCKR
Sbjct: 121 LKFEEDKQKMKEGKALIQYFCK------PCKPTKTNGKRTRNLPEHDMEKWETFKEYCKR 174

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE  RE+   L     +  E++LW LDQ INDRG R+DL LV    +     +++L E+
Sbjct: 175 DVEVEREIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEE 234

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            + LT   + +      L+ ++    G ++  +++ ++  ++  S    + K L L +L 
Sbjct: 235 AINLTG--LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKNVKKILELRQLM 292

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338
           +  S I K  T+  A   D R+RG LQFYGA+RTGRW+G + Q QNLP+      E +  
Sbjct: 293 AKTS-IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARN 351

Query: 339 ILT----QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
           +L     +TI+ L   ++I D L   S  +R+  I ++G + +VAD + IEARV+A++A 
Sbjct: 352 LLRNGDFETIEFL--FDSIPDTL---SQLIRTAFIPTDGNRFIVADFSAIEARVIAYLAN 406

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           E W++  F  G DIY  + +K F  P++K  ++   RA GK+ ELALGY G     +   
Sbjct: 407 EQWRLDVFKEGGDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFD 466

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---HLWMQDQYPEFAVKDKLIGTACELVKKA 509
               +  +   + V       DW +A  H     W  D+  + A+ +K            
Sbjct: 467 KTGSIPDEDLPKLVS------DWRKASPHITQFWWNVDKAAKKAITEKTT---------- 510

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
             A H G+  ++                         P ++         I LPS R+L 
Sbjct: 511 -VALHHGIKFIYD------------------------PGVLF--------IQLPSGRKLS 537

Query: 570 Y-----------SDVKGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           Y           SDV    +Y  +   + Q  R  TYG KL ENIVQA +RD L E M  
Sbjct: 538 YLRPKIEEGKFGSDV---ITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMAR 594

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             K G+ +V+ VHDE+V +       SV  +CS+  ++  WA GLPLKA+GYE   Y K
Sbjct: 595 VEKKGFKVVMHVHDELVLDV-SKEIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 235/721 (32%), Positives = 339/721 (47%), Gaps = 128/721 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLP+SL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRD 166
             ++   K   GK LI  F      S P   T+AN  +           WQ+F  YC +D
Sbjct: 119 KLAQE--KDAAGKNLIKYF------SVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQD 170

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           V     + ++L  +P+ D E D ++ DQ INDRG  +D +LV         + + L  ++
Sbjct: 171 VVVEMAIAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGEL 230

Query: 225 VKLTDGIIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKD 276
             LT     +SR      L+ + +   G+   D+      +EG LK +L           
Sbjct: 231 KALTGLDNPNSRAQLLPWLKEHGYSANGLTKADVEQELKKAEGELKRVLEL--------- 281

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ--- 333
               +L ++ S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    
Sbjct: 282 ----KLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIK 337

Query: 334 ---ERSEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVL 389
              +  E +  + I A+   E + D L       VR+ ++A +G    V+D + IEARV+
Sbjct: 338 DLDDAREYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVI 394

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           AW AGE W++  F+    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K
Sbjct: 395 AWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALK 454

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            M +         +  VK                           +++L G   +     
Sbjct: 455 QMGA--------LNMGVK---------------------------EEELQGLVDD----- 474

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  ++ ++Q WKD+    A +     +I +R    + ++  R  K  + I LPS R L 
Sbjct: 475 WRRANKKIVQFWKDVQR--AAI----KAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLA 528

Query: 570 YSDVK---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           Y+  K               GD +Y          + TYGGKL ENIVQA +RDIL E +
Sbjct: 529 YARAKVEPGDYGDKIIYEGQGDRAYFTA-------QETYGGKLVENIVQATARDILAEAL 581

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                 GYD+V  VHDE + E        +  +  LM + P WA+GLPL +EGY  K Y 
Sbjct: 582 LRIEAAGYDVVFHVHDEAIIEGSG---LIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYM 638

Query: 675 K 675
           K
Sbjct: 639 K 639


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 211/705 (29%), Positives = 339/705 (48%), Gaps = 92/705 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP ++ D      +P +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +YL D++V+  A+N+ FER    +  G+ +  + W CT V A    LP SL+    ALN 
Sbjct: 61  EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
            +   KM EGK LI  FC       P   T+AN            + W+LF  YC RDV+
Sbjct: 121 DKK--KMSEGKDLIRYFCM------PCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVD 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             +++  +L   P+ D E+ L+ +DQ INDRG  +D +L+          ++ + +   +
Sbjct: 173 VEKQIRNKLAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           ++   + +      L+ +L    GI++  +++  ++ ++   N      +++  RLA S 
Sbjct: 233 ISG--LENPNSVSQLKDWLNE-KGIEVDSLAKAAVEELVE--NTQGDVAEMMKLRLAMSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L +++  
Sbjct: 288 TSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVK 347

Query: 347 LNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
             R + +     + P  + S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ 
Sbjct: 348 EGRYDLVELLYDSTP-DVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEE 406

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F     IY  T +K F+ PI +++K    RA GKV  LA  Y G      +M +      
Sbjct: 407 FRGAGKIYEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGAL----- 461

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                           F  +++L G       ++WR  +  ++ 
Sbjct: 462 -------------------------------NFVEEEELKGLV-----QSWRTANPHIVN 485

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574
            W ++       V+E      R++  V  + +      + I LPS R L Y   +     
Sbjct: 486 YWYEIDGAVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNR 539

Query: 575 ---GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                 SY    T+ +  R  +YG K  ENIVQA +RD+L E M    K G+DIV  +HD
Sbjct: 540 FGSESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHD 599

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V E P+    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 600 EVVLEVPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 336/715 (46%), Gaps = 116/715 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  +T  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGL 236

Query: 231 IIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNRL 282
              +SR      L+ + +   G+   D+      +EG LK +L               +L
Sbjct: 237 ANPNSRAQLLPWLKEHGYSANGLTKADVEQELKTAEGELKRVLEL-------------KL 283

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ERS 336
            ++ S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R       +  
Sbjct: 284 QTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAR 343

Query: 337 EEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           E +  + I A+   E + D L       VR+ ++A +G    V+D + IEARV+AW AGE
Sbjct: 344 EYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGE 400

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            W++  F+    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M +  
Sbjct: 401 QWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA-- 458

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                  +  VK                           +++L G   +     WR  ++
Sbjct: 459 ------LNMGVK---------------------------EEELQGLVDD-----WRRANK 480

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            ++Q WKD+            +I +R    + +L  R  K  + I LPS R L Y+  K 
Sbjct: 481 KIVQFWKDVQRAAI------KAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYARAKV 534

Query: 575 --------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                         GD +Y          + TYGGKL ENIVQA +RDIL E +      
Sbjct: 535 EPGDYGDKIIYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEAA 587

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           GY +V  VHDE + E       ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 588 GYGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 228/714 (31%), Positives = 338/714 (47%), Gaps = 101/714 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG+   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166
           N  +   K   G  LI  F K      P   T+ N +          + WQ F EYC +D
Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           V     +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++
Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +LT   + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ 
Sbjct: 232 KELTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343
           S S+  K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE +   Q 
Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348

Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++A +        E + D L      +R+ ++A  G + +V+D + IEARV+AW A +DW
Sbjct: 349 VKAKDVEGIELMYEDVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405

Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450
            ++ F     IY  T A+ F+    T  D  S   K+ R  GKV  LALGYQGG    K 
Sbjct: 406 VLEVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M +                               +++   E  ++D         +   W
Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569
           R  ++ +   W +  +     +Q GG      +   PR L   +    + I LPS R+L 
Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539

Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
           Y+     +GD         Q        ++TYGGKL ENIVQA +RD+L E M+   + G
Sbjct: 540 YAKAHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREG 599

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           Y IV  VHDE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score =  296 bits (757), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 218/707 (30%), Positives = 339/707 (47%), Gaps = 97/707 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M K+ ID+ET S   L K GV+ YAE     I L AY+ DD  VK+ D      +P ++L
Sbjct: 1   MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DE++   A N+ FER+   + L   +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
            +   KM EGKALI  F      S P   T+ N ++           W +F EY +RDVE
Sbjct: 121 DKQ--KMNEGKALIRYF------SIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRID---LDLVLKLQELIAQERKKLDED 223
              E+ K+L   P+   E + + +DQ INDRG  ID   +D  +K  E++ +E     + 
Sbjct: 173 TEMEIKKKLSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENM---DR 229

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            ++LT   + +      L+ +L    G+++  +++  ++S +   N     K+++  R  
Sbjct: 230 AIELTG--LENPNSPLQLKEWLNK-KGLEIDSLAKKDVESAIK--NAEGDIKEVLELRQE 284

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S S++ K + +      + R RG +QFYGA+RTGR+SG + Q QNL R    +  L ++
Sbjct: 285 LSKSSVRKYDAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARS 344

Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +      ET+      P  + S  +R+  I   G + +++D + IEARVLAWIA E W +
Sbjct: 345 LVKNRDYETMEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVL 404

Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            AF NGEDIY  T ++ F  P++K  ++   R  GK+  LA GYQG     K M    G+
Sbjct: 405 DAFENGEDIYCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG---GI 461

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++      ++S                                     +  +WR  +  +
Sbjct: 462 EMGLSEDELQS-------------------------------------IVDSWREANPNI 484

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           + LW D+      VV+       R       LV+   K  + I LPS RRL Y   K   
Sbjct: 485 VSLWWDIDSVVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGM 538

Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +     +         ++  +  +YGGK  ENIVQAI+RDIL E M    K G++IV+ +
Sbjct: 539 NRFGGESVVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHI 598

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE+V E+  +   S+  +  +M+  P WA GL L A+G+E++ Y+K
Sbjct: 599 HDEVVIESDSS---SIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 229/714 (32%), Positives = 337/714 (47%), Gaps = 101/714 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LGI   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166
           N  +   K   G  LI  F K      P   T+ N +          + WQ F EYC +D
Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           V     +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++
Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             LT   + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ 
Sbjct: 232 KALTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343
           S S+  K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE +   Q 
Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348

Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++A +        E + D L      +R+ ++A  G + +V+D + IEARV+AW A +DW
Sbjct: 349 VKAKDVEGIELMYEDVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405

Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450
            ++ F     IY  T A+ F+    T  D  S   K+ R  GKV  LALGYQGG    K 
Sbjct: 406 VLEVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M +                               +++   E  ++D         +   W
Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569
           R  ++ +   W +  +     +Q GG      +   PR L   +    + I LPS R+L 
Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539

Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
           Y+     +GD         Q        ++TYGGKL ENIVQA +RD+L E M+   + G
Sbjct: 540 YAKAHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREG 599

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           Y IV  VHDE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 226/708 (31%), Positives = 335/708 (47%), Gaps = 96/708 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   V++ D T    +PSD++
Sbjct: 1   MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DETV+  A N+ FERI   + LG+     I    W C+ V A T GLP SL+    
Sbjct: 61  TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----QAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  F +    +        NH+      W  F +Y  RD+E  
Sbjct: 121 VLKLDKQ--KLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + ++L   P+ D   D + LDQ INDRG  +D+ LV +   +  + R +L   +  LT
Sbjct: 179 MSIQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G++   + +  +  +L  + +  LA D++  R   + S+
Sbjct: 239 E--LDNPNSVQQMKQWL-ADNGMETDTLGKKIVAELLKTAPL-DLA-DVLSLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV +DGR RG  QF+GA+RTGRW+G + Q QNLP+     E L +    + 
Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHL--EDLAEARALVR 351

Query: 349 RG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            G         E + D L   S  +R+  +   G +L+V+D + IEARV+AW+AGE+W+ 
Sbjct: 352 FGDFDALEMLYEDVPDTL---SQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQ 408

Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             FA G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M +   G
Sbjct: 409 DVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMG 468

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L+                           +D+ P+                 AWR  +  
Sbjct: 469 LE---------------------------EDELPQLV--------------DAWRQANPC 487

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------ 570
           +++ W D+ +     V+       +R  +   +        + I LPS RRL Y      
Sbjct: 488 IVKFWWDVDKAAMEAVR------YKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIG 541

Query: 571 -SDVKGDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
            +   G C +Y    AT +  R  +YG K  ENIVQA +RDILC  M+  T     IV+ 
Sbjct: 542 ENKFGGQCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQ--TLQHCSIVMH 599

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEIV E    P  S+  +C  M + PSWAKGL L+A+GYE   Y+K
Sbjct: 600 VHDEIVIEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 229/714 (32%), Positives = 337/714 (47%), Gaps = 101/714 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG+   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166
           N  +   K   G  LI  F K      P   T+ N +          + WQ F EYC +D
Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           V     +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++
Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +LT   + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ 
Sbjct: 232 KELTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343
           S S+  K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE +   Q 
Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348

Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++A +        E + D L      +R+ ++A  G + +V+D + IEARV+AW A +DW
Sbjct: 349 VKAKDVEGIELMYEDVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405

Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450
            ++ F     IY  T A+ F+    T  D  S   K+ R  GKV  LALGYQGG    K 
Sbjct: 406 VLEVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M +                               +++   E  ++D         +   W
Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569
           R  ++ +   W +  +     +Q GG      +   PR L   +    + I LPS R+L 
Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539

Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
           Y+     +GD         Q        ++TYGGKL ENIVQA +RD+L E M    K G
Sbjct: 540 YAKAHLEQGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAG 599

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           Y IV  VHDE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 225/702 (32%), Positives = 332/702 (47%), Gaps = 88/702 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   + K GV+AY  AE   I L AYA++D+ + + D      +P  +++ L
Sbjct: 2   LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++  A N+ FER    K L   +P ++W C++V A   G   SL+ A  +LN  + 
Sbjct: 62  TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
             KM+EGKALI  F               ++++ W++F  YCK+DVE  R + K+L   P
Sbjct: 122 --KMKEGKALIRYFSMPCKRGERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYP 179

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IND G +ID  LV    E     + K  E+   LT G+   + Q  
Sbjct: 180 VTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALT-GLENPNSQV- 237

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            L+ +L    G+    +S+  ++ +L      ++ + L L R   S +++ K   +  AV
Sbjct: 238 QLKGWL-ETKGVKAESLSKEKVRELLKEVEDEKVKRVLKL-RQELSKTSVKKYEAIKRAV 295

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEEILTQTIQALNRGETIA 354
             D R+RG L+FYGA+RTGRWSG + Q QNLPR      E +  +L      +      +
Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
            P  L S  +R+  I +   + +V+D + IEARV+AW+AGE W I  F     +Y    +
Sbjct: 356 VPEVL-SQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAAS 414

Query: 415 KAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTM-ASHCGLDLQQFSQNVKS 468
           + F  PI+K+ K       R  GKV  LA GYQG       M A   GL  ++ S  V  
Sbjct: 415 RMFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVKMGLKEEELSGIVA- 473

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                                   AWR  +  +++LW+ +    
Sbjct: 474 ----------------------------------------AWRKSNSNIVKLWRKI---- 489

Query: 529 ACVVQEGGSISARRVANVPR----LVMRRHKRDVHIVLPSSRRLVY--SDVKGDCSY--- 579
                E  +I A R   V +    L     +  + I LPS R L Y    ++ D  +   
Sbjct: 490 -----EDAAIKAVREKKVVKMQYGLEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKL 544

Query: 580 ------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                 +   T    R  TYGGKLTENIVQAI+RD L   M    + GY IV  VHDE++
Sbjct: 545 KLTYEGIEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVI 604

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P+  + S+  +  +M K   WAKGLPLKA+G+E   Y+K
Sbjct: 605 LDVPNG-FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645


>gi|139473888|ref|YP_001128604.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 336/715 (46%), Gaps = 116/715 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL 236

Query: 231 IIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNRL 282
              +SR      L+ + + + G+   D+      +EG LK +L               +L
Sbjct: 237 DNPNSRAQLLPWLKEHGYSVNGLTKADVEQELKTAEGELKRVLEL-------------KL 283

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ERS 336
            ++ S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R       +  
Sbjct: 284 QTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAR 343

Query: 337 EEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           E +  + I A+   E + D L       VR+ ++A +     V+D + IEARV+AW AGE
Sbjct: 344 EYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGE 400

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            W++  F+    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M +  
Sbjct: 401 QWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA-- 458

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                  +  VK                           +++L G   +     WR  ++
Sbjct: 459 ------LNMGVK---------------------------EEELQGLVDD-----WRRANK 480

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            ++Q WKD+            +I +R    + +L  R  K  + I LPS R L Y+  K 
Sbjct: 481 KIVQFWKDVQRAAI------KAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYARAKV 534

Query: 575 --------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                         GD +Y          + TYGGKL ENIVQA +RDIL E +      
Sbjct: 535 EPGDYGDKIVYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEAA 587

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           GY +V  VHDE + E       ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 588 GYGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 338/716 (47%), Gaps = 118/716 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT G
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALT-G 235

Query: 231 IIRSSRQTYAL---RMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNR 281
           +   + +T  L   + + +  +G+   D+      +EG LK +L               +
Sbjct: 236 LDNPNSRTQLLPWLKEHGYSASGLTKADVEKELKTAEGELKRVLEL-------------K 282

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ER 335
           L ++ S++ K   +  A  SDGR+ G LQFYGASRTGRW+G V Q QNL R       + 
Sbjct: 283 LQTAMSSLKKYEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDA 342

Query: 336 SEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
            E +  + I A+   E + D L       VR+ ++A +G    V+D + IEARV+AW AG
Sbjct: 343 REYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAG 399

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           E W++  F+    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M + 
Sbjct: 400 EQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA- 458

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                   +  VK                           +++L G   +     WR  +
Sbjct: 459 -------LNMGVK---------------------------EEELQGLVDD-----WRRAN 479

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           + ++Q WKD+            +I +R    + +L  R  K  + I LPS R L Y+  K
Sbjct: 480 KKIVQFWKDVQRAAI------KAIKSRAPVRLGKLRFRYRKGFLFITLPSGRNLAYARAK 533

Query: 575 ---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                          GD +Y          + TYGGKL ENIVQA +RDIL E +     
Sbjct: 534 VEPGDYGDKIVYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEA 586

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            G+ +V  VHDE + E       ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 587 AGHGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 335/715 (46%), Gaps = 116/715 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172
              +   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLVQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL 236

Query: 231 IIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNRL 282
              +SR      L+ + + + G+   D+      +EG LK +L               +L
Sbjct: 237 DNPNSRAQLLPWLKEHGYSVNGLTKADVEQELKTAEGELKRVLEL-------------KL 283

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ERS 336
            ++ S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R       +  
Sbjct: 284 QTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAR 343

Query: 337 EEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           E +  + I A+   E + D L       VR+ ++A +     V+D + IEARV+AW AGE
Sbjct: 344 EYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGE 400

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            W++  F+    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M +  
Sbjct: 401 QWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA-- 458

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                  +  VK                           +++L G   +     WR  ++
Sbjct: 459 ------LNMGVK---------------------------EEELQGLVDD-----WRRANK 480

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            ++Q WKD+            +I +R    + +L  R  K  + I LPS R L Y+  K 
Sbjct: 481 KIVQFWKDVQRAAI------KAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYARAKV 534

Query: 575 --------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                         GD +Y          + TYGGKL ENIVQA +RDIL E +      
Sbjct: 535 EPGDYGDKIVYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEAA 587

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           GY +V  VHDE + E       ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 588 GYGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 229/714 (32%), Positives = 335/714 (46%), Gaps = 101/714 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG+   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166
           N  +   K   G  LI  F K      P   T+ N +          + WQ F EYC +D
Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           V     +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++
Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             LT   + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ 
Sbjct: 232 KALTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343
           S S+  K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE +   Q 
Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348

Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++A +        E + D L      +R+ ++A  G + +V+D + IEARV+AW A +DW
Sbjct: 349 VKAKDVEGIELMYENVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405

Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450
            +  F     IY  T A+ F+    T  D  S   K+ R  GKV  LALGYQGG    K 
Sbjct: 406 VLDVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M +                               +++   E  ++D         +   W
Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569
           R  ++ +   W +  +     +Q GG      +   PR L   +    + I LPS R+L 
Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539

Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
           Y+     +GD         Q        ++TYGGKL ENIVQA +RD+L E M    K G
Sbjct: 540 YAKAHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAG 599

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           Y IV  VHDE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 218/713 (30%), Positives = 341/713 (47%), Gaps = 108/713 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +G  +    W C+ V + T GLP SL +    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T++N  +           WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
              E+ ++L   P+S  E + + +DQ INDRG RID  LV   +K QE    +  ++ + 
Sbjct: 173 VEMEITQKLERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQK 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L    G+++  +S+ ++  +L  +   ++ + L L +L 
Sbjct: 233 LTGLAN-----PNSPLQLKDWLNQ-RGMNIDSLSKASVAQLL-QTTTGKVHQVLSLRQLL 285

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S  S++ K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +  L + 
Sbjct: 286 SK-SSVKKYQAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEA 342

Query: 344 IQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
            + + +G T A  +       + S  +R+  I S G    VAD + +EARV+AW++GE+W
Sbjct: 343 RELVKQGNTTALSMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEW 402

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-ASH 454
           + KAFAN EDIY  + ++ F  P+ K  V+ E R  GK+ ELALGY G     K M A++
Sbjct: 403 RQKAFANNEDIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATN 462

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            GL  ++        S  + W  A  H                                 
Sbjct: 463 LGLTEEELH------SLVQMWRNASPH--------------------------------- 483

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPR---LVMRRHKRDVHIVLPSSRRLVYS 571
             ++Q W D+ +     ++     +   +  + R   + +R         L S R+L YS
Sbjct: 484 --IVQFWWDIDKAAKECIKSHLPQATHGIKFIYRSGCMFLR---------LRSGRKLCYS 532

Query: 572 DVKGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
             K   +   + +   M         R  TYG KL ENIVQA SRD+L E M+     G 
Sbjct: 533 KPKIGINRFGSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGN 592

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +V+ +HDE V + P    +S+  +  +MT+ P WA GL L A G+ +  Y+K
Sbjct: 593 PVVMHIHDEAVIDAPAN--YSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 224/701 (31%), Positives = 318/701 (45%), Gaps = 88/701 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET SP  L K GV+ Y       I L +YA D   V+  D      +P  +L
Sbjct: 1   MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A+N+ FER      LG  +    W C+ V A T GLP SLK+    LN 
Sbjct: 61  DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                KM+EGK LI  FC    +S    P  D         W+LF  Y  RDVE    + 
Sbjct: 121 DAQ--KMDEGKDLIKHFCVPDDNSQRRLPSSDPA------GWKLFKMYNARDVEVETAIR 172

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+ D   + + +DQ INDRG RID  L      +  + R +      KLT   +
Sbjct: 173 QKLADFPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--L 230

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G  +  M++ ++   L+  N T   ++ +  R   S S++ K 
Sbjct: 231 DNPASPLQLQEWLNQ-HGCPIESMAKESVDDALA--NATGQVREALELRQELSRSSVAKY 287

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +   +D R  G LQFYGA+RTGRW+G + Q QNLPR    +    + +     GET
Sbjct: 288 RKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGET 347

Query: 353 -------IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                  + D L   S  +R+  I S   + +VAD + IEARVLAW+AGE+  + AF NG
Sbjct: 348 LEMLYSSVPDTL---SQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNG 404

Query: 406 EDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           ED+Y  T +  F  P++K  V+ E R  GK+  LA GY G     K M            
Sbjct: 405 EDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG----------- 453

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A+K  L     + +  AWR  +  ++QLW  
Sbjct: 454 -----------------------------ALKMGLSEDELQPIVDAWRQANPNIVQLWHK 484

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT 582
           +       +  G  ++ R       L   +    + I LPS RRL Y     G   +  T
Sbjct: 485 VDNAATRAISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGT 538

Query: 583 ATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
           + +        +  +  TYGGKL ENIVQA +RD+L E +      G+ IV+ +HDE+V 
Sbjct: 539 SITYWGQGVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVI 598

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + P     +V  +C+LM + P WA+GLP+ A GYE   Y+K
Sbjct: 599 DEPINSGTTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 230/704 (32%), Positives = 338/704 (48%), Gaps = 93/704 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +L ID+ET S  P+ K G   Y +     I L AY++DDEPV++ D T +  +P  ++  
Sbjct: 2   ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMT-KDPLPERVVDA 59

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L ++ +   A N+ FE +  KK    D     W CTSVLA    LP+SL N   AL   E
Sbjct: 60  LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118

Query: 121 HLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
              K   GK LI  F    K +  +P       +  + W  + EY ++DV   R + KRL
Sbjct: 119 --AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRL 176

Query: 178 IPLSDG--ERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDEDIVKLTDGII 232
           + L     E + WLLDQ IN RG ++D++LV   L   + I +E  +  + +  L     
Sbjct: 177 LSLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTGL----- 231

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L+ +L    G DL  M +  + ++L+  +I    + ++ NR     S+I K 
Sbjct: 232 ENPNSTMQLKEWLTARLGYDLETMRKDDVSNLLAQ-DIPSDVRKVLQNRQVLGNSSIKKY 290

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEEIL-TQTIQA 346
             +  AV SDGR+ G LQFYGA R+GRW+G V Q QNLPR      + + ++L ++ ++ 
Sbjct: 291 LAMKNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEM 350

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           L+      +P  +    +R+ ++A +G + +VAD + IEARV+AW+A E W+   FA G 
Sbjct: 351 LDL--LYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGG 408

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + +  F+ P++K  V+   R  GKV ELALGY GG    K M S           
Sbjct: 409 DIYCASASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDS----------- 457

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                + + PE     +L G     + +AWR     + + WKD 
Sbjct: 458 ---------------------KGEIPE----KELPG-----IIEAWRQASPRITKFWKDA 487

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------GDCS 578
                 VV+ G  +   +  N+      + K  + I LPS RRL Y+  +      G  S
Sbjct: 488 DSAAKQVVRTGEPVRIIQ-GNIKFF---KSKGFLFIELPSGRRLAYARPRLGLNQFGSES 543

Query: 579 YLNTATSQLM----RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                  Q+     R  TYGGKL ENIVQA++RD L   M   +K GY IV  +HDE+V 
Sbjct: 544 IEYDGMDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVI 603

Query: 635 ETPDTPYFSVGTL---CSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      VG+L     +M +   W +GL L A G+E   Y K
Sbjct: 604 EAP----IGVGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 224/708 (31%), Positives = 332/708 (46%), Gaps = 96/708 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S +PL K GV+ Y E     I L AY+ D +PV++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DE V+  A N+ FERI   + LG      +  + W C+ V A T GLP SL+    
Sbjct: 61  LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164
            L   +   K+ EGK LI  FC+      P   T+ N  +           W +F +Y  
Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQ------PCAPTKTNGQRTRNRPFHAPDKWAMFKKYNI 172

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    + +RL   P+     D + +DQ INDRG R+D++LV    E+  + R KL E
Sbjct: 173 RDVETEMGIQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTE 232

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            + ++T+  + +      ++ +L    G++   + +  +  +L  S   +L++ L L R 
Sbjct: 233 TMKEITE--LENPNSVQQMKAWLS-DNGLETDTLGKKAVAELLK-SAPPKLSQVLTL-RQ 287

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   + + V +DGR RG  QFYGA+RTGR+SG   Q QNLP+   S+    +
Sbjct: 288 QLAKSSVRKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEAR 347

Query: 343 TIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           ++      E +     D     S  +R+  I   G + +VAD + IEAR++AW AGE W+
Sbjct: 348 SLVRSGNFEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWR 407

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              FA G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M +   
Sbjct: 408 QDVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA--- 464

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           LD+                          +D+ P                  AWR  +  
Sbjct: 465 LDMG-----------------------LTEDELPPLV--------------DAWRQSNPN 487

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-- 574
           +++ W ++       V+   + S   +    R  M      + I LPS R+L Y   K  
Sbjct: 488 IVKFWWNVDHAVMEAVKFKHTTSEYGLTFSCRSGM------LFITLPSGRKLAYVKPKIG 541

Query: 575 -----GDCSYLNTATSQLMRER--TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
                G C       S    ER  +YG K  ENIVQA +RDILC  M+  T     IV+ 
Sbjct: 542 TNKFGGQCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQ--TLRCCSIVMH 599

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +HDE+V E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 600 IHDEVVIEA--DPSMSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 232/718 (32%), Positives = 337/718 (46%), Gaps = 120/718 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YA      + L  Y  D   V++ D      +P +++
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D +V   A N++FER+     LG  +  + W CT V + T GLP SL++A  AL  
Sbjct: 64  SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
            +   K+ EGK LI  FC       P   T+AN            + W+ F  Y  RDVE
Sbjct: 124 EKQ--KLTEGKDLIRYFCV------PCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVE 175

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++ KRL   P+ D   + + LDQ INDRG  +D++LV +   + A+ R++L + + +
Sbjct: 176 TEMQIQKRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQE 235

Query: 227 LTD----GIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNITQLAKDLI 278
           LT       ++  +Q  A         G     +LV  +   LK++LS     QLAK   
Sbjct: 236 LTGLDNPNSVQQMKQWLADHGLETDTLGKKVVAELVRSAPEPLKTVLSLRQ--QLAK--- 290

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                   S++ K   +  AV +DGR  G  QFYGA+RTGR+SG + Q QNLP+   S+ 
Sbjct: 291 --------SSVKKYAAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSD- 341

Query: 339 ILTQTIQALNRG----------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            L Q  +AL RG          E I D L   S  +R+  +  +G+K +VAD + IEARV
Sbjct: 342 -LAQA-RALMRGGNYEAISMLYEDIPDTL---SQLIRTAFVPQDGRKFIVADFSAIEARV 396

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446
           +AW AGE W++K F +G+DIY  + ++ F+ P++K  V+   R  GK+ ELALGY G   
Sbjct: 397 IAWFAGERWRLKVFEDGDDIYSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVG 456

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K+M                                         A++  L     + +
Sbjct: 457 ALKSMG----------------------------------------ALEMGLAEEELQPL 476

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWR  +  + Q W D+       V++   + +  +    R  M      + I LPS R
Sbjct: 477 VDAWRTSNPMITQFWWDVDRAVKECVKKRVPMESHGLHFDYRSAM------LFITLPSGR 530

Query: 567 RLVYSDV--------KGDCSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           RL Y           +   +Y+  +   +  R  +YG K  ENIVQ  +RDILC  M+  
Sbjct: 531 RLAYVKPRIGENQFGRESVTYMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMR-- 588

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           T     IV  VHDEI+ E       S+  +C  M + PSWAKGL L+A+GYE + Y+K
Sbjct: 589 TLRNCAIVAHVHDEIIIEADRR--MSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 213/664 (32%), Positives = 308/664 (46%), Gaps = 86/664 (12%)

Query: 34  AYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDI 88
           AYA  DE   LW    D  E    PS+   Y         A NS FE  ++       + 
Sbjct: 2   AYAIGDEDPILWLPGDDLPEFVTNPSEFTIY---------AWNSFFEWCIWHHVQEWSNA 52

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           P   W  T+ LA    +P +L     AL   +   K + GK LI R  K      P    
Sbjct: 53  PIFLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSK------PNRGK 106

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           R       + F EYC++DV   R +  RL PLS  ER +W LDQTIN RG  ID   V  
Sbjct: 107 RIQDADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVEN 166

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
              +I Q  +KL++++ +LT   + +  Q   +  Y+    G  L+   +  L+++L   
Sbjct: 167 ALLIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLEDE 226

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  +A+ LI  R     ++  K   L + V+ D R  G L ++GA+ TGRWSG  FQPQ
Sbjct: 227 TLPPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQ 285

Query: 329 NLPRQERSEEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADLA 382
           NLPR   S +     I+     ++        DP+   S  +R  I A  GK+L+V D +
Sbjct: 286 NLPRP--SFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYS 343

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IEARVL W+AG++  +     G +IY  T ++ +  P +KV++EQR IGKV  LALGYQ
Sbjct: 344 QIEARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQ 403

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           GGAK F+ MA   G+++              D + A+                       
Sbjct: 404 GGAKAFQGMAEVYGVEI--------------DTDLADE---------------------- 427

Query: 503 CELVKKAWRAKHQGVLQLWKDLTE-GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
              +K  WR  ++ +++ W  + +     V   G +   R +        R     +   
Sbjct: 428 ---IKVDWRVANRKIVKFWWGVEKAALNAVTHPGKTFEIRAIK------FRFTDNYLFCR 478

Query: 562 LPSSRRLVYSDVKGDCSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILC 611
           LPS R L Y   K                N+ T +  R+ TYGGKL ENI QA++RD++ 
Sbjct: 479 LPSGRLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMA 538

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
           E M      GY++VL+VHDE+++E  D  + SV     LM + P WAKGLP+ +EG+E  
Sbjct: 539 EAMLRVENAGYEVVLSVHDELIAEANDD-FGSVEEFEQLMCELPVWAKGLPVTSEGFECL 597

Query: 672 RYRK 675
           RYRK
Sbjct: 598 RYRK 601


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 235/730 (32%), Positives = 339/730 (46%), Gaps = 124/730 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  YA D   V++ D  +   +P +++
Sbjct: 1   MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKK---TLGIDIPS-----------------KRWICTSV 98
             L D+ V   A N+ FER+   +    LG+ +                   + W C+ V
Sbjct: 61  DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151
            A T GLP SLK     L   +   KM+EGKALI  F      S P   T+AN       
Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQ--KMDEGKALIKYF------SVPCAPTKANGGRTRNM 172

Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                + W+ F  Y KRDVE    + +RL   P+ D   D + +DQ INDRG R+D+DLV
Sbjct: 173 PFHDPEKWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLV 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            K  E+  + R +L   +  +T+  + +      ++ +L    G++   + +  +  ++ 
Sbjct: 233 AKAIEMDTRSRTELTTAMKDITE--LDNPNSVQQMKQWLS-DNGLETDSLGKKVVAELIK 289

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            +  ++L   L L R   + S++ K  T+  AV  DGR RG   FYGA+RTGRW+G + Q
Sbjct: 290 TAP-SELQTVLEL-RQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQ 347

Query: 327 PQNLPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLV 377
            QNLP+     E L      +  G         E + D L   S  +R+  I  +G +L 
Sbjct: 348 LQNLPQNHL--EDLADARALVKSGDFDAVKLLYEDVPDTL---SQLIRTAFIPKDGTQLY 402

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVM 435
           V+D + IEARV+AW AGE W+ K FA+G DIY  + ++ F+ P++K  V+   R  GK+ 
Sbjct: 403 VSDFSAIEARVIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIA 462

Query: 436 ELALGYQGGAKVFKTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           ELALGY G     K M A   GL                            +D+ P    
Sbjct: 463 ELALGYGGSVGALKAMGAIEMGLS---------------------------EDELPPLV- 494

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
                         AWR  +  +++ W D+       V+   + S+  +    R  M   
Sbjct: 495 -------------DAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYGLTFSCRSGM--- 538

Query: 555 KRDVHIVLPSSRRLVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAI 605
              + I LPS R L Y   K       G+C +Y    AT +  R  +YG K  ENIVQA 
Sbjct: 539 ---LFITLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQAT 595

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665
           SRDILC  MK  T    +IV+ +HDE+V E    P+ S+  LC  M + P WA+GL L+A
Sbjct: 596 SRDILCYAMK--TLRNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRA 651

Query: 666 EGYEAKRYRK 675
           +GY    Y+K
Sbjct: 652 DGYTTPFYKK 661


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 227/707 (32%), Positives = 330/707 (46%), Gaps = 95/707 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + ID+ET S  PL K GV+ YAE     I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DETV   A N++FER+   + LGI +    W C+ + A T GLP SLK+    L  
Sbjct: 61  AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K+EEGK LI  FC       P   TR+N            + W+LF EY KRDVE
Sbjct: 121 DRQ--KLEEGKDLIRYFC------VPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD--EDI 224
               +  RL   P+ + E + +++DQ INDRG  +D   V   Q +   ER K    E  
Sbjct: 173 TEMAIQARLKKFPVPESEWENYVIDQEINDRGILVDTTFV--TQAICCDERSKAVCLERA 230

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             LTD  + +      L  +L    G+ +  +++  +  +L  +  T   ++++  R   
Sbjct: 231 QNLTD--LENPNSPLQLMDWLH-GKGLSVESLAKSEVTKMLKTA--TGDVREVLELRQQL 285

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           S +++ K   +     +D R RG  QFYGA+RTGR++G + Q QNLP+   ++    +T+
Sbjct: 286 SKTSVKKYMAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTL 345

Query: 345 QALNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 E +       SD     +R+  +     + VVAD A IEARVLAW+AGE W + 
Sbjct: 346 VKDGDFELLDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLD 405

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F    DIY  T ++ F+  ++K  +  + R  GK   L+ GY G       M +     
Sbjct: 406 VFREHGDIYCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMGA----- 460

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +K++ +    +L    WRA +  ++
Sbjct: 461 -------------------------------VESGMKEEELQPLVDL----WRASNPHIV 485

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVK-GD 576
           Q W D+       V+       RRV      +   +K  V  I LPS R L Y+  + G+
Sbjct: 486 QFWWDVDRAVKTCVK-------RRVEVETHGIRCVYKSGVLFIRLPSGRELAYAKPRIGE 538

Query: 577 CSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
             +   +        T +  R  T+GGKL ENI Q  +RD+L   MK     G+DIV+ V
Sbjct: 539 NRFGGESVTYEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHV 598

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEIV E P     SV  +CS+M +NP WAKGLPLKA+GYE + YRK
Sbjct: 599 HDEIVLEVP-YGVSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 218/699 (31%), Positives = 330/699 (47%), Gaps = 79/699 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L K GV+ Y E     I L AYA+DDEP+ + D  +   +P  + + L
Sbjct: 5   LSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTKDL 64

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V+  A+N+ FER    K     +P ++W CTSV A T GLP +L      L     
Sbjct: 65  TDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLDAQ 124

Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRL 177
             K   GK LI  F   CK +  +        +H    W+ F +YCK+DV   R + K++
Sbjct: 125 --KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKI 182

Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIR 233
              P+ + E  LW LDQ IND G R+D  LV +  +   Q   +LD +  +LT  D    
Sbjct: 183 EKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTGLDNPNS 242

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +++ T  L+     +      D   G L        +T++ +     R   S ++  K  
Sbjct: 243 TTQLTVWLKKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLE----LRKEMSKTSTKKYE 298

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +  A+ SD R RG LQF GA+RT RW+G + Q QNLP+ +  +  + + +    + E I
Sbjct: 299 AMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAI 358

Query: 354 A----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                 P  + S  +R+  I S+G + +V+D + IEARV+AW+AGE W++K F +   IY
Sbjct: 359 ELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIY 418

Query: 410 VTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNV 466
             + +  F+ PI++++K    R  GK+ ELALGY G     + M +   GLD        
Sbjct: 419 EASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLD-------- 470

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                               D+ P+                 AWR  +  +++LW D+ +
Sbjct: 471 -------------------ADELPDLVT--------------AWRNSNPKIVKLWWDVDK 497

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------GDCSYL 580
                V+E   +  +       +        + I LPS R+L Y   K      G  +  
Sbjct: 498 AAMTAVREHMPVRIQY-----GITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALT 552

Query: 581 NTATSQLMR--ER--TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                Q+ +  ER  TYG KL ENIVQA++RD L   M      GYDI + VHDE++ + 
Sbjct: 553 YEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDV 612

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P+T   ++  +  +M++   WA GLPL+A+GYE + Y+K
Sbjct: 613 PNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 226/714 (31%), Positives = 330/714 (46%), Gaps = 108/714 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET S QPL K GV+ Y E     I L AY+ D  PV+  D      +PS++L
Sbjct: 1   MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V   A N+ FERI   + LG      +    W C+ V A   GLP SL+ A  
Sbjct: 61  CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164
            L   +   K+ EGK LI  FC+      P   T++N  +           W  F +Y  
Sbjct: 121 VLGLEKQ--KLAEGKDLIKYFCQ------PCAPTKSNGQRTRNLPKHSPDKWLAFKKYNI 172

Query: 165 RDVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  RL+  P+ D   + + LDQ INDRG  +D++LV +  ++  + R +L +
Sbjct: 173 RDVETEMSIQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQ 232

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            + +LT   + +      ++ +L    G++   + +  +  +L  +   QL K L L R 
Sbjct: 233 AMKELTS--LDNPNSVQQMKQWL-ADNGVETDTLGKKAVAELLKTAP-QQLQKVLTL-RQ 287

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   +  AV +DGR RG  QFYGA+RTGRW+G + Q QNLP+    +  LT+
Sbjct: 288 QLAKSSVKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDD--LTE 345

Query: 343 TIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
               +  G         E + D L   S  +R+  +    +K +VAD + IEARV+AW+A
Sbjct: 346 ARGLVRAGGFDALEMLYEDVPDTL---SQLIRTAFVPQGNRKFIVADFSAIEARVIAWLA 402

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM 451
            E W+   FA G+DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M
Sbjct: 403 DEKWRQDVFAEGKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAM 462

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   GL                            +D+ P                  AW
Sbjct: 463 GALEMGLS---------------------------EDELPALV--------------SAW 481

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  +  ++Q W  +            +++ +       ++       + I LPS R L Y
Sbjct: 482 RQANPKIVQFWWAVDRAVM------DAVTRKTTTKTHGIIFSARNGMLFITLPSGRSLSY 535

Query: 571 SDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
              K       GDC +Y     T +  R  +YG K  ENIVQA SRDILC  MK  T   
Sbjct: 536 VKPKIGENRFGGDCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMK--TLRC 593

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             IV+ +HDE+V E       S+  +C  M + P WA GL L+A+GYE   Y+K
Sbjct: 594 CSIVMHIHDEVVIEADRR--MSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 218/700 (31%), Positives = 338/700 (48%), Gaps = 87/700 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L   GV+ Y+      I L AY+ DDE     D       P + ++ L
Sbjct: 5   LAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIEML 64

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+TV   A N+ FER  F          + W CT+V A    LP SL+     L   + 
Sbjct: 65  FDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLDKQ 124

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVEATR 171
             KM EGK LI  FC       P   T++N            + W+ F  YC RDV+  +
Sbjct: 125 --KMTEGKELIKYFCS------PCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEK 176

Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           ++ +RL   P+   E++++ LDQ INDRG  +D +LV          ++       +LT 
Sbjct: 177 QIRQRLAKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG 236

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--SILSHSNITQLAKDLILNRLASSGS 287
             + +      L+++L    G+++  +++ T+K  S+ +  ++ ++ K     RLA+S +
Sbjct: 237 --LENPNSVSQLKLWL-KEKGLEVDSLAKDTVKDLSMKAEGDVQEVLK----LRLATSKT 289

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K   +  +V ++ R+ G LQFYGA+RTGRW+G + Q  NLP+    +  L + + + 
Sbjct: 290 SVKKYEAIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSE 349

Query: 348 NRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            R E +     + P  + S+ +R+  +A  G + +++D + IEARVLAW+AGE+W+++ F
Sbjct: 350 GRYEEVELFYESTP-NVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVF 408

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDL 459
                IY  + +  F+  I++++K    R  GK+ ELALGY G      +M +   GL  
Sbjct: 409 ETHGKIYEASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMGALKMGLTE 468

Query: 460 QQFSQNVKSTSTFEDWEQAESH---HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++    V +      W  A  H     W  D+    AV+DK               K   
Sbjct: 469 EELPGLVST------WRSANPHITAFWWAVDEAAVTAVRDK---------------KPSK 507

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANV-PRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           V ++  +   G   V    G    R+++ V PR+++ +  R+          L Y  +  
Sbjct: 508 VGRVSFEYKSGILFVTLPSG----RKLSYVKPRMMLNKFGRE---------GLTYEGI-- 552

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   + + MR  TYG KL ENIVQA SRDIL E M    K G+DIV  VHDE+V E
Sbjct: 553 ------GESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLE 606

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            PD    SV  +  +M  NP W +GLPLKA G+E+  Y+K
Sbjct: 607 VPDGKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 221/708 (31%), Positives = 337/708 (47%), Gaps = 96/708 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S +PL K GV+ Y E     I L AY+ D + V++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L +ETV+  A N+ FERI   + LG      + S+ W C+ + A T GLP SL+    
Sbjct: 61  LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164
            L   +   K+ EGK LI  FC+      P   T+ N  +           W +F +Y  
Sbjct: 121 VLGLEKQ--KLSEGKDLIKYFCQ------PCAPTKTNGQRTRNRPFHAPDKWAMFKKYNI 172

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    + +RL   P+     D + +DQ INDRG R+D++LV    E+  + R +L E
Sbjct: 173 RDVETEMGIQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTE 232

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            + ++T+  + +      ++ +L    G++   + +  +  +L  ++  +L++ L L R 
Sbjct: 233 TMKEITE--LENPNSVQQMKAWLS-DNGLETDTLGKKAVTELLKSAS-PKLSQVLTL-RQ 287

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   + + V +DGR RG  QFYGA+RTGR+SG   Q QNLP+    +    +
Sbjct: 288 QLAKSSVRKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEAR 347

Query: 343 TIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           ++      E +     D     S  +R+  I   G + +VAD + IEARV+AW AGE W+
Sbjct: 348 SLVRSGNFEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWR 407

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
            + FA G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M +   
Sbjct: 408 QEVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA--- 464

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           LD+                          +++ P                  AWR  +  
Sbjct: 465 LDMG-----------------------LTEEELPPLV--------------DAWRQSNPN 487

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-- 574
           +++ W ++       V+   + S+  +    R  M      + I LPS R+L Y   K  
Sbjct: 488 IVKFWWNVDHAVMEAVKFKHTTSSYGLTFSCRSGM------LFITLPSGRKLAYVKPKLG 541

Query: 575 -----GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
                G C +Y     T +  R  +YG K  ENIVQA +RDILC  MK  T     IV+ 
Sbjct: 542 TNKFGGQCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--TLRCCSIVMH 599

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +HDE+V E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 600 IHDEVVIEA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 228/708 (32%), Positives = 335/708 (47%), Gaps = 96/708 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y  A+   + L  YA D + VK+ D  +   +P ++L
Sbjct: 39  MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICTSVLARTNGLPSSLKNAC 113
             L DET+   A N+ FER+   + LG        PS  W C+ V +   GL  SL+   
Sbjct: 99  DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSS-WKCSMVWSAYMGLALSLEGVG 157

Query: 114 LALNFSEHLTKMEEGKALIARFC----KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L   +   K+ EGK LI  FC       I+         + +  WQ F  Y KRDVEA
Sbjct: 158 AVLGLEKQ--KLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEA 215

Query: 170 TRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             ++ +RLI  P+ +   D + LDQ INDRG ++D+D V +   +     +KL   + ++
Sbjct: 216 EIQIQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQI 275

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T+  + +      ++ +L    G+++  + +  +   L  ++  +L + L L R   + S
Sbjct: 276 TN--LDNPNSVQQMKSWL-CENGLEMETLGKKAVAEKLKETD-GELNEVLSL-RQQLAKS 330

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEEIL-- 340
           ++ K   +  AV SD R RG  QFYGA+RTGR++G + Q QNLP+      + +  I+  
Sbjct: 331 SVKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRN 390

Query: 341 --TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T++ L   E I D L   S  +R+  +   G K +VAD + IEARVL+W+AGE W+
Sbjct: 391 GDVETLEMLY--EDIPDTL---SQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWR 445

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
            K FA+G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M     
Sbjct: 446 TKVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---- 501

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A++  L     + +  AWR  +  
Sbjct: 502 ------------------------------------ALEMGLEEEELKPLVNAWRMSNPN 525

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           + Q W D+       V+E  S     +              + IVLPS RRL Y   + G
Sbjct: 526 ITQFWWDVDRAAKQCVKENKSQETHSIE------FHCFSGMLFIVLPSGRRLAYVKPRIG 579

Query: 576 DCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +  +   +        T +  R  +YG K  ENIVQAISRDIL   MK+     Y IV  
Sbjct: 580 ENQFGGESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIVAH 637

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE++ ET   P  SV  +C  M++ P WAKGL L A+GYE   Y+K
Sbjct: 638 VHDEVIIET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 230/721 (31%), Positives = 328/721 (45%), Gaps = 108/721 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
           KL+IDIET S   +   G++ YAE     + L AYA DD  V+L D T+   +    L  
Sbjct: 5   KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64

Query: 59  --QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             + L  +  +  AHN+ FE    K+ L I I   RW CT V     G P+SL+    AL
Sbjct: 65  VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRD 166
           +  E   K+  GKALI  FCK      P   T+ N         H  + W+LF EYCKRD
Sbjct: 125 DMPEDKAKLRTGKALINYFCK------PCKPTKTNGGRTRNLPKHASEKWELFREYCKRD 178

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           VE  RE+ K L  +  G    W+ D  +N RG  +D  LV +    I  E K    D +K
Sbjct: 179 VEVAREIDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALV-EAAIAIDGEVKSAHLDTIK 237

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              G+     +   L  +L      ++  ++  ++K++L  S++T  A+ ++        
Sbjct: 238 RITGVDNPRSRAQVLD-WLNDTLDEEITSLNAASVKALLE-SDLTDDARAVLTAWQGLGK 295

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           ++  K  TL  A   D R+RG LQFYGASRTGRW+G + QP NLPR +     L Q  + 
Sbjct: 296 TSTKKYETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYN--LNQAGEL 353

Query: 347 LNRGE---------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           +  G          ++ + L   S  +R+C +   G K V+ D + IEARVLAW+AGE W
Sbjct: 354 VKAGHKKDIELLHGSVPNTL---SGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHW 410

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMA 452
            ++ F     IY  T A+ +N     + K       R  GK+  LALGYQG     + M 
Sbjct: 411 VLEEFKGDGKIYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMG 470

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +              S   F D                     D+L G     + +AWR 
Sbjct: 471 A--------------SEDEFTD---------------------DELRG-----LVRAWRV 490

Query: 513 KHQGVLQLWK--------DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +  + +LW+         +++ F         IS +   N    +      ++ I LPS
Sbjct: 491 ANPCIAELWRYTEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGI------NLAIGLPS 544

Query: 565 SRRLVYSD---VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
            R L Y +   V G   Y +   +   +E+TYGGKL ENIVQAI+RD+L + +   TK  
Sbjct: 545 GRELYYHNPVIVDGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTL 604

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
                   IVL VHDE+V E        V  L   + +  PSWA+GLPLK E + +  Y+
Sbjct: 605 VVGGINAHIVLHVHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYK 664

Query: 675 K 675
           K
Sbjct: 665 K 665


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 217/709 (30%), Positives = 334/709 (47%), Gaps = 99/709 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIE+ S   + K G + Y+E +   I L AY+ D +PV++ D  +   +P D++
Sbjct: 1   MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + L DETV+  A N+ FER+   + LG++  +  + W CT V A T GLP SL      L
Sbjct: 61  KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRD 166
              +   K+ EGK L+  FC       P + T+ N           +  W+ F  Y  RD
Sbjct: 121 GLDKQ--KLSEGKDLVRYFCM------PCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRD 172

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           VE    + ++L   P++    + + LDQ INDRG  ID+ L      L    + +++E +
Sbjct: 173 VEVEVAIQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQL 232

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            KLT   + +      +R +L    G+++  + +  +K ++  +N  +L K+++L R   
Sbjct: 233 KKLTG--LENPNSVLQMRSWLSQ-HGLEVESLGKAAVKELIEQTNDDKL-KEVLLLRQQL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + S++ K   +      D R RG  QFYGA+RTGR++G   Q QNLP+   S+  L +  
Sbjct: 289 AKSSVRKYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSD--LAEAR 346

Query: 345 QALNRGE-----TIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           + +  GE      + D +  + S+ +R+  I   G K +V+D + IEARV+AW+AGE W+
Sbjct: 347 ELVRNGEYELLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWR 406

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HC 455
            + F NG DIY  + ++ F  P++K  V+   R  GK+ ELALGY G       M + + 
Sbjct: 407 KEVFRNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMGALNM 466

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           GL   +    V S                                         WR  + 
Sbjct: 467 GLTEDELQPLVAS-----------------------------------------WRETNP 485

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            + +LW D+       V  G       +              + I L S RRL Y   + 
Sbjct: 486 AITKLWWDIDSAAKGCVSVGAKTETHGI------TFEYKSGFMFIQLLSGRRLAYVKPRI 539

Query: 575 GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
           G   +   A        T +  R  +YG K  ENIVQA++RDILC  M+N     Y IV 
Sbjct: 540 GQNRFGGAAVTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNLKD--YRIVG 597

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDE++ E P     +V  + S+M++ P+WAKGL L A+GYE   Y+K
Sbjct: 598 HVHDEVIIEVPKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score =  286 bits (732), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 223/707 (31%), Positives = 328/707 (46%), Gaps = 95/707 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ Y+E     I L AY+ D  PV++ D      +P+++L
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L DETV+  A N+ FER+   + LG+D  +  + W CT V   T GLP SL      L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRD 166
              +   K+ EGK LI  FC       P + T+ N  +           W  F  Y  RD
Sbjct: 121 GLDKQ--KLTEGKDLIRYFC------VPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRD 172

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           VE    +  +L   P+ D     + LDQ INDRG  ID D V    +L    +  L++ +
Sbjct: 173 VEVEIAIQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQL 232

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +LT   + +      +R +L L  G++   + +  +  +L       L + L+L R   
Sbjct: 233 QELTG--LENPNSVLQMRGWL-LDHGLETESLGKKAVAELLEQPIDENLKQVLVL-RQQL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + S++ K   +     SD R RG  QFYGA+RTGR++G   Q QNLP+   S+    +++
Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSL 348

Query: 345 QALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
              +  E +    G    + S+ +R+  +   G K +V+D + IEARV+AW++GE W+ +
Sbjct: 349 VKQSNFEMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQE 408

Query: 401 AFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-ASHCGL 457
            F NG DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M A   GL
Sbjct: 409 VFKNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGL 468

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +    V S                                         WR  +  +
Sbjct: 469 TEDELQPLVNS-----------------------------------------WRDSNINI 487

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GD 576
            +LW  + +     V+E      RR  +   +        + I L S R+LVY   K G+
Sbjct: 488 TELWWAVDKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRKLVYVKPKIGE 541

Query: 577 CSYLNT--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
             +           AT +  R  +YG K  ENIVQAI+RDILC  M+N  K  Y IV  V
Sbjct: 542 NKFGGEAVTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHV 599

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE++ E P      V  +C LM++ P WA+GL L A+GYE + Y+K
Sbjct: 600 HDEVIIEVPMES--KVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 227/704 (32%), Positives = 326/704 (46%), Gaps = 88/704 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   V++ D     A+PS ++
Sbjct: 1   MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V   A N+ FERI   K LG+     +    W CT V +   GLP SL+    
Sbjct: 61  DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120

Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  F   CK ++ +         H    W  F  Y  RDVE  
Sbjct: 121 VLGLEKQ--KLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + ++L   P+ +G    + LDQ INDRG  +D+DLV +  E+  + R KL   I +LT
Sbjct: 179 MAIQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G++   + +  +  +L  ++   L K L L R + + S+
Sbjct: 239 E--LENPNSVVQMKQWLS-DHGLETDTLGKKAVVELLKTAS-EPLGKVLEL-RQSLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +   V +DGR RG  QFYGA+RTGRW+G + Q QNLP+    +  L Q    + 
Sbjct: 294 VKKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPD--LEQARSLVR 351

Query: 349 RG-----ETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            G     E + D +  + S+ +R+  +   G K +VAD + IEARV+AW+AGE W+ + F
Sbjct: 352 SGNFAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVF 411

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            +G DIY  + ++ F+ P++K  V+   R  GK+ ELALGY G     K M +      +
Sbjct: 412 ESGGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEE 471

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +  Q + S                                        AWR+ +  +++L
Sbjct: 472 EELQPLVS----------------------------------------AWRSSNPKIVRL 491

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------ 574
           W D+       V+E      R       +          I LPS RRL Y   +      
Sbjct: 492 WWDIDRAAMKAVRE------RTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRF 545

Query: 575 -GDCSYLNTATSQLMRER--TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
             DC            ER  +YG KLTENIVQA SRDILC  M+N       IV+ VHDE
Sbjct: 546 GSDCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRH--CSIVMHVHDE 603

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV E       S   +C  M + P WAKGL L+A+GYE   Y+K
Sbjct: 604 IVIEADRR--MSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 225/711 (31%), Positives = 327/711 (45%), Gaps = 93/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIE+ S   L K GV+ YAE     + L  Y+ D  P+++ D     ++P ++L
Sbjct: 1   MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109
             L D +V+  AHN+ FER+     L    P          ++W CT + +   GLP SL
Sbjct: 61  AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165
                 L     + K   GK LI +FC  +  S      R N   A    W  F +Y +R
Sbjct: 121 DAVATVLKLD--VQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              LT   + +      L+ +L    G  L  +++  + + L  +  T   K+++  R  
Sbjct: 239 AQTLTG--LENPNSPIQLKQWL-ASRGCVLDSLAKAEVDAALDTA--TGTVKEVLGLRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-------QERS 336
            + S++ K   +     SDGR RG +QFYGA RTGR++G + Q QNLPR       Q R+
Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353

Query: 337 EEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
             + T  ++AL    E++ D L   S  +R+  I S G + +VAD + IEARV+AW+AGE
Sbjct: 354 L-VRTGNLEALELLHESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
              ++AF  G+D+Y  T ++ F  P++K  V+ E R  GK+  LA G+ G     + M +
Sbjct: 410 TTTLQAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMGA 469

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +      +K                                      +  AWRA 
Sbjct: 470 ---LTMGLAEHELKP-------------------------------------IVDAWRAA 489

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  ++ LW  + E     +    SI  R       L        + I LPS RRL Y   
Sbjct: 490 NPHIVALWAGVEEAAIAAIASRQSIRLR------NLRFSVEAGILFIELPSGRRLAYVKP 543

Query: 574 K-GDCSYLNTATSQLMRE--------RTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + G+  +  T+ +              TYGGKLTENIVQAI+RD+L  GM    K G+ I
Sbjct: 544 RLGENRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQI 603

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ VHDEIV + P+   F+    C LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 604 VMHVHDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 225/711 (31%), Positives = 331/711 (46%), Gaps = 104/711 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ + IDIET S   L K GV+ YAE     I L  Y+ D   V++ D      +P++++
Sbjct: 1   MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D +V   A N++FER+   K L +   +    W C+ V +   GLP SL+     L
Sbjct: 61  NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRD 166
              +   K+ EGK LI  FC       P   T++N           +  W+ F  Y  RD
Sbjct: 121 GLEKQ--KLTEGKDLIKYFCT------PCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRD 172

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           VEA   + +RL   P+ +     + LDQ INDRG  ID+  V +  ++  Q R+KL   +
Sbjct: 173 VEAEMSIQQRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALM 232

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             +T+  + +      ++ +L    G++   + +  +  +L  +    L   L L R   
Sbjct: 233 QDITN--LENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAP-EPLGTVLEL-RQQL 287

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + S+I K   +  AV +DGR RG  QFYGA+RTGR+SG + Q QNLP+    +    +  
Sbjct: 288 AKSSIKKYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD---LEQA 344

Query: 345 QALNRGETIADPLGLA--------SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           +AL R     D L L         S+ +R+  +   G K +VAD + IEARV+AW+AGE 
Sbjct: 345 RALVRSGNF-DALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEK 403

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS- 453
           W+I  F NG DIY  + ++ FN P++K  V+   R  GK+ ELALGY G     K+M + 
Sbjct: 404 WRIDVFQNGGDIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGAL 463

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G++ ++    V                                          AWR  
Sbjct: 464 EMGIEEEELQPLV-----------------------------------------TAWRQS 482

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY--- 570
           +  + +LW D+       V++        +  + +  M      + IVLPS RRL Y   
Sbjct: 483 NPNITKLWWDVDHAVKTCVKQKIPTETHGIKFIYQSGM------LFIVLPSGRRLSYVKP 536

Query: 571 ---SDVKGDCSYLNT---ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
               +V G  S        T +  R  +YG K  ENIVQAISRDILC  M+  T     I
Sbjct: 537 RMGENVFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSI 594

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDEI+ E       S+ T+C  M + P+WA GL L A+GYE + Y+K
Sbjct: 595 VAHVHDEIIIEA--DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 228/710 (32%), Positives = 322/710 (45%), Gaps = 97/710 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET SP  L   GV+ YAE     I L  Y+ D  P K+ D      +P  +L
Sbjct: 1   MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109
           Q L D TV   A N+ FER+     L    P          + W CT V A + GLP SL
Sbjct: 61  QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRD 166
             A  AL     + K   G+ LI RF   SI  P  D  R   ++    WQ +  Y +RD
Sbjct: 121 DGAAKALRLP--IEKDPAGQKLIRRF---SI--PGKDGIRVLPSDDPVGWQQYISYNRRD 173

Query: 167 VEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           V+   +L  RL   P+ + E + + LDQ IND G RID  L     E+ ++ R       
Sbjct: 174 VDVEVQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARA 233

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +LT   + +      L+ +L    G +L  +++  +++ L    +T    +++  R   
Sbjct: 234 QQLTG--LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALE--TVTGDVAEVLRLRQDL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           S S++ K   +     SD R RG +Q+ GA RTGR++G + Q QNLPR    +  L    
Sbjct: 289 SRSSVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPD--LASAR 346

Query: 345 QALNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
             LN G     E +  PL    S  +R+  I S   + +VAD + IEARVLAW+AGE+  
Sbjct: 347 SLLNAGNSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGT 406

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HC 455
           ++AF  G+D+Y  T ++ F  P++K   + E R  GK+  LA GY G     K M +   
Sbjct: 407 LQAFREGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGALRM 466

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           GLD  +    V                                          AWR  + 
Sbjct: 467 GLDESELKPLV-----------------------------------------DAWRDANP 485

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            V+Q W D+ +     V+       R    V R+ +      + I LPS R L Y   + 
Sbjct: 486 MVVQFWHDIEQAAITTVE------TRTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRL 539

Query: 575 -----GDCSYLNTATSQLMRE----RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
                G  S L        R+     TYGGKLTEN+VQA +RD+L   M +    G+ IV
Sbjct: 540 GENRFGMTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIV 599

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + +HDEIV + P T   SV  + +LMT+ P+WA GLPL A+GYE   Y K
Sbjct: 600 MHIHDEIVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 219/702 (31%), Positives = 327/702 (46%), Gaps = 90/702 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L +D+ET S   L + GV+ Y +     I LC+Y+ DD  V   D      +P +++
Sbjct: 19  VKSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVV 78

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D +V+  A+N+ FER      LG  +    W CT V A T GLP SLK+    L  
Sbjct: 79  AALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGL 138

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +    K+ EGK LI  F    K  I   P D +      AW LF +Y  RDVE    + +
Sbjct: 139 AHQ--KLAEGKDLIKYFSLPTKTGIRHQPSDDS-----AAWALFKQYNARDVEVETTIRR 191

Query: 176 RLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +L   P+ D     + +DQ INDRG  ID  L         + RK+      +LT   + 
Sbjct: 192 KLSHHPVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LD 249

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L+ +L    G  +  M++  + S L  +  T   ++ +  R   S S++ K  
Sbjct: 250 NPASPLQLQSWL-AEQGCKISSMAKEDVDSALDTA--TGSVREALELRQDLSKSSVAKYR 306

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351
            +++A  +DGR  G LQFYGASRTGRW+G + Q QNLPR    +  L Q    ++ G+  
Sbjct: 307 KMADATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPD--LAQARSLVHYGDFD 364

Query: 352 -------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                  ++ D L   S  +R+  I S   + +VAD + IEARVLAW+AGE+  + AF N
Sbjct: 365 VLEMLYPSVPDTL---SQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTN 421

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           GED+Y  T +  F  P++K   + E R  GK+  LA GY G     K M           
Sbjct: 422 GEDLYCATASAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG---------- 471

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+K  L  +  + +  AWRA +  ++ +W 
Sbjct: 472 ------------------------------ALKMGLTASELQPIVDAWRAANPNIVAMWH 501

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581
           D+ +     +Q   +I+ R    +  L     K  + I LPS RRL Y     G   +  
Sbjct: 502 DVDQ---TAIQ---AITTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGG 555

Query: 582 TATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           T+ +        +  +  TYGGKL ENIVQA +RD+L E +      G+++V+ +HDE+V
Sbjct: 556 TSITYWGQGINRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVV 615

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +       +V  +C+LM + P+WA GLP+ A GY+   Y K
Sbjct: 616 VDESKDSGTTVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 230/735 (31%), Positives = 330/735 (44%), Gaps = 134/735 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D   VK+ D  +   +P +L+
Sbjct: 1   MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60

Query: 59  QYLRDETVMCVAHNSLFERIL---FKKTLGIDIP-----------------SKRWICTSV 98
             L D++++  A N+ FER+    + + LGI +                  S+ W C+ V
Sbjct: 61  DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151
            A T GLP SL+     L   +   K+ EGK LI  F      S P   T+AN       
Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQ--KLTEGKELIKYF------SVPCAPTKANGGRTRNR 172

Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                + W  F  Y  RDVE    +  RL   P+ +     + +DQ INDRG RID+DLV
Sbjct: 173 PFHDPEKWDAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLV 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +  E+  + R +L   I K+TD  + +      ++ +L    G++   + +  +  ++ 
Sbjct: 233 TEAIEMDTRSRTELTSAIKKMTD--LENPNSVQQMKQWLS-NNGLETDSLGKKVVAELIK 289

Query: 267 HS-----NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +     N+ +L + L       + S++ K  T+  AV  DGR RG   FYGA+RTGRW+
Sbjct: 290 TAPPELQNVLELRQQL-------AKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWA 342

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASN 372
           G + Q QNLP+     E L      +  G         E + D L   S  +R+  I  +
Sbjct: 343 GRLIQLQNLPQNHL--EDLADARALVKSGDFDAVKLLYEDVPDTL---SQLIRTAFIPKS 397

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRA 430
             +  V+D + IEARV+AW AGE W+ K FA G DIY  + ++ F+ P++K  ++   R 
Sbjct: 398 DTQFYVSDFSAIEARVIAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQ 457

Query: 431 IGKVMELALGYQGGAKVFKTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
            GK+ ELALGY G     K M A   GL                            +D+ 
Sbjct: 458 KGKIAELALGYGGSIGALKAMGAIEMGLS---------------------------EDEL 490

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
           P                  AWR  +  +++ W D+       V+   + S   +    R 
Sbjct: 491 PPLV--------------DAWRQTNPNIVKFWWDVDRAVMEAVKHKHTTSCYGLTFSCRS 536

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTATSQLMRER--TYGGKLTEN 600
            M      + I LPS R L Y   K       G+C       S    ER  +YG K  EN
Sbjct: 537 GM------LFITLPSGRNLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVEN 590

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQA SRDILC  MK  T    +IV+ +HDE+V E    P  S+  LC  M + P WA+G
Sbjct: 591 IVQATSRDILCYAMK--TLRNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARG 646

Query: 661 LPLKAEGYEAKRYRK 675
           L L+A+GY    Y+K
Sbjct: 647 LKLRADGYTCPFYKK 661


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 225/702 (32%), Positives = 329/702 (46%), Gaps = 90/702 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L  DIET S   L K GV+ Y  A+   I L AY+ D   VK+ D      +P  +L  L
Sbjct: 7   LHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLILSAL 66

Query: 62  RDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACLALN 117
            D+ V+  AHN+ FERI F + LG      I  + W CT   A   GLP SL      L 
Sbjct: 67  EDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGAVLG 126

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-----QAWQLFGEYCKRDVEATRE 172
             +   KM EGK LI  FC G       +  R  ++     + W+ F  Y  RDVEA  E
Sbjct: 127 LGKQ--KMTEGKDLIRFFC-GPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAEME 183

Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++LI  P+ D   D + L + IND G ++D+D V +   +      KL + + ++T+ 
Sbjct: 184 IEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEITE- 242

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      ++ +L    G++   + +  +  +L  +    LA+ L L R   + S++ 
Sbjct: 243 -LDNPNSVQQMKDWLS-DNGLETDTLGKKAVAELLKDAP-EHLAEVLKL-RQQLAKSSVK 298

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  AV SDGR+RG   F GA+RTGR+S  + Q QNLP+    +  L +    +  G
Sbjct: 299 KYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMD--LKEARSIVKNG 356

Query: 351 ETIA------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
           ++ A      D     S  +R+  +   G K +VAD + IEARVL+W+AGE W+ + FAN
Sbjct: 357 DSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFAN 416

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M           
Sbjct: 417 GGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMG---------- 466

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L     + +  AWRA +  +++ W 
Sbjct: 467 ------------------------------ALEMGLEEEELKPLVNAWRASNPNIVKFWW 496

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------SDVKGD 576
           D+       ++E  S   + V N+    M      + IVLPS R+L Y       ++ G 
Sbjct: 497 DVDREVKKCIKEKKS---QEVQNIKFHYMSGM---LFIVLPSGRKLAYVKPNIGENIFGG 550

Query: 577 CSYLNT---ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
            S       AT +  R  +YG K  ENIVQAISRDIL   MK  T +   IV  VHDE++
Sbjct: 551 ESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMK--TLSTCSIVAHVHDEVI 608

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E   +   S+  +C  M + P WAKGL L A+GYE   Y+K
Sbjct: 609 IEADQS--LSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 217/706 (30%), Positives = 321/706 (45%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA+     I + AY+WD  PV++ D  +   +P +++
Sbjct: 1   MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A+N+ FE     +      P ++W CT V     G  + L     AL  
Sbjct: 61  EALADPAVVKHAYNAAFEWYCLNRFF--YSPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRDVE 168
            +   K+  G +LI  FC       P   TR N +          + W+LF EYC  DV 
Sbjct: 119 PQDKRKLGTGGSLIRTFCI------PCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVV 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           A  E+ +RL   P+ D E  LW LDQ IN RG   DL +V     +  Q   +L  + + 
Sbjct: 173 AEMEIQRRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAIS 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + + +    L  +L   TG ++ ++ +GT+  ++   +  + A+ ++  R   S 
Sbjct: 233 LTG--LDNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDEGK-ARRVLEIRQELSK 289

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           ++  K   +  A  SD R+RG LQFYGA+RTGRW+G + Q QNLPR   S     + +  
Sbjct: 290 TSTKKYAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVV 349

Query: 347 LNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
             + E +    G   D     +R+  +   GK+L VAD + IEARV+AW+AGE W++  F
Sbjct: 350 ERKVEMLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVF 409

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A    IY  + ++ F  PI+++ K  + R  GKV ELALGYQGG      M +       
Sbjct: 410 ATHGKIYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMGA------- 462

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
              Q +                     + PE   +              WR  ++ ++ L
Sbjct: 463 -LDQGLTEA------------------ELPEIVTR--------------WRNANRRIVDL 489

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH-IVLPSSRRLVYSDV------ 573
           W  + E  A  V E G     R     R      K+D   I LPS R+L Y+        
Sbjct: 490 WYSM-EAAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLREND 548

Query: 574 --KGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
             K    Y  ++  + +     TYGGKL EN VQAI+RD L   +      GY IVL VH
Sbjct: 549 FGKPALHYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVH 608

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+ +E        +  +  +M +   WA GLPLK +G+    Y K
Sbjct: 609 DEVGAELSSAD--ELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 335/710 (47%), Gaps = 90/710 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA  +   I L AY+ D + VK+ D  +  A+P ++L
Sbjct: 1   MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+DET +  A+N++FE        GI+ P ++W CT V     G  + L     A+  
Sbjct: 61  DLLKDETCIKYAYNAVFEWWCLNMA-GIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVE 168
            +   K+  G ALI  FC       P + T++N         H  + W+LF EYC +DV 
Sbjct: 120 PQDKKKLTTGSALIRYFC------IPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVV 173

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E+ +RL   P+ + E  LW+LD  +N  G R+D +LV     + A  R  L E+   
Sbjct: 174 TEMEIGRRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARD 233

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +   T  L  +L    G ++ ++ + T+  ++   +  + AK ++  R   S 
Sbjct: 234 ITK--LDNPNSTSQLLNWLEE-AGEEVENLQKATVGKMIDTLDDGK-AKRVLEIRQELSK 289

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K   + EA+  D R+RG LQFYGA+RTGR++G + Q QNLPR       + + +  
Sbjct: 290 TSVKKYKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIK 349

Query: 347 LNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
              GE +    G   D     +R+  I S G   VV+D + IEARV+AW+AGE+W+++ F
Sbjct: 350 KGDGELLEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVF 409

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTM-ASHCG 456
                IY  + ++ F  PI+ ++K +     RA GKV ELALGYQG       M A+  G
Sbjct: 410 KTHGKIYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAADMG 469

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L  ++                       M+D                  +   WR   + 
Sbjct: 470 LTDEE-----------------------MKD------------------IVDRWRKSSKR 488

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV-LPSSRRLVY----- 570
           +++LW  L E  A  V E G     +   + +     + +D   + LPS R+L Y     
Sbjct: 489 IVELWYAL-ENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFL 547

Query: 571 -----SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
                  ++     +N  T +     TYGGKLTENIVQAI+RD L E +      G+ IV
Sbjct: 548 KENQFGQMQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIV 607

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             VHDEI+ + P +    +  +   MT+  SWAKGL L A G+    Y K
Sbjct: 608 FHVHDEIILDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 222/715 (31%), Positives = 326/715 (45%), Gaps = 114/715 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YA      + L  YA D   V + D      +P + +
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D +V     N++ ER+     LG  +  + W CT V + T GLP SL++A  AL  
Sbjct: 64  SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVE 168
            +   K+ EGK LI  FC       P   T+AN         H  + W+ F  Y  RDVE
Sbjct: 124 EKQ--KLTEGKDLIRYFCV------PCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVE 175

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++ KRL   P+ D   + + LDQ INDRG  +D++LV +   +  + R++L   + +
Sbjct: 176 TEMQIQKRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRE 235

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLIL 279
           LT+  + +      ++ +L             G     L    + +L K       +++ 
Sbjct: 236 LTE--LENPNSAQQMKQWL----------ADHGLETDTLGKKAVAELVKTAPEPLREVLS 283

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ 333
            R   + S++ K   +  AV +D R  G  QFYGA+RTGR+SG + Q QNLP+       
Sbjct: 284 LRQQLAKSSVKKYTAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLA 343

Query: 334 ERSEEILTQTIQALN-RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           E    + +   +AL+   E I D L   S  +R+  +  +G+K +VAD + IEARV+AW 
Sbjct: 344 EARALVRSGNYEALSVLYEDIPDTL---SQLIRTAYVPQDGRKFIVADFSAIEARVIAWF 400

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKT 450
           AGE W++K F +G DIY  + ++ F+ P++K  V+   R  GK+ ELALGY G     K+
Sbjct: 401 AGERWRLKVFEDGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKS 460

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M                                         A++  L     + +  AW
Sbjct: 461 MG----------------------------------------ALEMGLAEEELQPLVDAW 480

Query: 511 RAKHQGVLQLWKDLTEGFA-CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           R  +  + Q W D+      C+ Q       R       L        + I LPS RRL 
Sbjct: 481 RGSNPMITQFWWDVDRAVKDCIRQ-------RIPTETHGLRFDYRSAMLFINLPSGRRLA 533

Query: 570 Y-------SDVKGD-CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
           Y       +   G+  +Y+  + T +  R  +YG K  ENIVQ  +RDILC  M+  T  
Sbjct: 534 YVKPRIGENQFGGESVTYMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQ--TLK 591

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              IV  VHDEI+ E       SV  +C  M + P WAKGL L+A+GYE + Y+K
Sbjct: 592 NCSIVAHVHDEIIIEADRR--MSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 222/716 (31%), Positives = 338/716 (47%), Gaps = 104/716 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S + + + GV+ YAE     + L +Y+ D  PV   D      +P ++L
Sbjct: 1   MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60

Query: 59  QYLRDETVMCVAHNSLFERIL--------------FKKTLGIDIPSKRWICTSVLARTNG 104
             L D++V+  A N  FER+               F+  +G  I  + W C  + +R  G
Sbjct: 61  SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFG 160
           + SSL +  +         K++EGK LI  FC    D       YD  +++  + W+ F 
Sbjct: 121 MMSSLDD--MGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYD--KSDAPKKWKEFI 176

Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           EY +RDVE   ++ + L  +P+ D   + + +DQ INDRG  +D     K  EL +  +K
Sbjct: 177 EYNRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKK 236

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           +L   + +LT    R        +M  +L+  GI+   + + ++  +L+ +      K++
Sbjct: 237 ELFPKLKELT----RLDNPNSPAQMKDWLMRQGIEADSLDKKSMPLLLASA--PDDVKEV 290

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           ++     S S++ K +T+  A   DGR RG   FYGA+RTGR++G + Q QNLP+     
Sbjct: 291 LMLYQQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDN 350

Query: 338 EILTQTIQALNRG------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
             L +T   +  G      E   D   + S  +R+  I   GKK VVAD + IEARV++W
Sbjct: 351 --LAETKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISW 408

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFK 449
           +AGE W+++AFANGEDIY    AK F  P++K  V+   R  GK+ ELA GY G     K
Sbjct: 409 LAGETWRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIK 468

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            M                                       E  + D  + +  E     
Sbjct: 469 AMGG------------------------------------TELNLTDDELYSLVE----D 488

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR     +++LW D+      V+ +  S++  R+     + +      + I LPS RRL 
Sbjct: 489 WRKTSPNIVKLWSDVQSVAVKVITDQSSMTFGRLKFSYEIGI------LFIELPSGRRLA 542

Query: 570 Y--------SDVKGDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
           Y         + K   +Y     + + +R  TYG KL ENI Q I+RD+L   M  A   
Sbjct: 543 YVRPKVEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSM--AAMK 600

Query: 621 GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             DIV  VHDE++ E  PDT   +V  +C LM + P WA+GL L+A+GYE + Y K
Sbjct: 601 DMDIVGHVHDEVIVECDPDT---TVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 216/711 (30%), Positives = 333/711 (46%), Gaps = 104/711 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN  +           WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
              E+ ++L   P+   E + + +DQ INDRG RID  LV   +K Q +   +  +  ++
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L    GI    +S+ ++  +L  +  T + + L L +L 
Sbjct: 233 LTGLAN-----PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT-VHQVLALRQLL 285

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338
           S  S++ K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR      E + E
Sbjct: 286 SK-SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344

Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++ Q  + AL    +++ D L   S  +R+  I S      VAD + +EARV+AW++ E 
Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-AS 453
           W+ ++FA  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M A+
Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT 461

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             GL                             D+ P                 + WR  
Sbjct: 462 KLGL---------------------------TDDELPPLV--------------QMWRNA 480

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              ++Q W D+ +      +E       +  +  + + R     + + L S R L Y   
Sbjct: 481 SPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPQP 534

Query: 574 KGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           K   +   + +   M         R  TYG KL ENIVQA SRD+L E M+     G  +
Sbjct: 535 KIGINRFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTV 594

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ +HDE V + P     S+ T+  LMTK P WA GL L A G+ +  Y+K
Sbjct: 595 VMHIHDEAVIDAPFNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 227/713 (31%), Positives = 334/713 (46%), Gaps = 109/713 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA  EQ  I L AY++D E V++ D      +P  +L
Sbjct: 1   MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+D  V+  A+N+ FE        GI  P  +W CT V A    LP+ L N   AL  
Sbjct: 61  TALQDMEVIKHAYNAAFEWYCLN-CAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
           +E   K   GK LI  FC       PY   + + V+ W+ F EY ++DV +  E+  RL 
Sbjct: 120 AEDKKKSAVGKQLIRYFC-----VKPY---KPDAVK-WKAFKEYNRQDVVSEMEIENRLS 170

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDEDIVKLTDGIIR 233
             P+ + E + W  D  +N  G ++D +LV   +K+QE   Q  ++L  + V+LT   + 
Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQE---QCEEELLNEAVRLTQ--LE 225

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L  ++    G  L +  + T++S L      ++ + L + R     +++ K  
Sbjct: 226 NPNSPTQLLNWVN-AQGYPLENTQKATIESALKEDLPLKVRRVLEI-RQQLGKTSVKKYE 283

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351
            ++  +    R+RG  QFYGAS+TGR+SG + Q QNLPR     E L +T + + R +  
Sbjct: 284 AMTNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYL--EPLAETRECVKRQDYE 341

Query: 352 -------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                  +I D L   S  +R+  I S G + VVAD + IEARV+AW+A E W  + FA 
Sbjct: 342 TLKLLFDSIPDTL---SQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFAT 398

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMAS-HCGLD 458
              IY  T ++ F+ PI+K++K       R  GKV  LALGYQGG     +M +   GL 
Sbjct: 399 HGKIYEATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMGALKMGLS 458

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                      +++ PE   +              WRA +Q ++
Sbjct: 459 ---------------------------EEELPEIVTR--------------WRAANQRIV 477

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK------RDVHIVLPSSRRLVY-- 570
            LW  +       V++G      R   V  L+ R  +      R + I LPS R+L Y  
Sbjct: 478 ALWSAVGSYALRTVRDG------RARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCK 531

Query: 571 -----SDVKGDCSYL---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
                +   G+  Y    N  T +     T+GGKL ENIVQ I+RD LCE +   T  GY
Sbjct: 532 PYIGLNQFGGESLYFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGY 591

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            IV  VHDE++ +       +V  LC +M +   WAKGL LK  G+  + Y+K
Sbjct: 592 RIVFHVHDEVIVDAGMD--LTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 227/717 (31%), Positives = 332/717 (46%), Gaps = 114/717 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LPK GV+ Y E     I L AY+ D +PV++ D      +P +++
Sbjct: 1   MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+TV+  A N+ FERI   + LG      +  + W C+ + A T GLP SL+    
Sbjct: 61  AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164
            L   +   K+ EGK LI  FC+      P   T+AN  +           W+ F  Y  
Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQ------PCAATKANGGRTRNRPFHAPDKWEAFKRYNI 172

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  +L   P+ +   + + +DQ INDRG R+D++LV +   +  + R++L  
Sbjct: 173 RDVETEMGIQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTA 232

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            I  +T+  + +      ++ +L    GI+   + +  +  +L  +    LA D++  R 
Sbjct: 233 AIKDMTE--LENPNSVQQMKQWLS-DNGIETDSLDKKAVAELLKDAP-DNLA-DVLTLRQ 287

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   + + V SDGR RG  QFYGA+RTGR+SG   Q QNLP+    +  L++
Sbjct: 288 QLAKSSVRKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPD--LSE 345

Query: 343 TIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
               +  G         E + D L   S  +R+  I        VAD + IEARV+AW A
Sbjct: 346 ARSLVRSGDFDGVELLYEDVPDTL---SQLIRTAFIPRENALFYVADFSAIEARVIAWFA 402

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM 451
           GE W+ + F  G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M
Sbjct: 403 GESWRQQVFEKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAM 462

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHL---WMQDQYPEFAVKDKLIGTACELVK 507
            +   GL+ ++    V +      W QA    +   W  D+    AVK K   T      
Sbjct: 463 GALDMGLNEEELPALVDA------WRQANPRIVEFWWAVDRAVMEAVKYKHTTT------ 510

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                          D    F+C   + G +                     I LPS R+
Sbjct: 511 ---------------DYGLTFSC---KSGML--------------------FITLPSGRK 532

Query: 568 LVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           L Y   K       G C +Y     T +  R  +YG K  ENIVQA +RDILC  MK  T
Sbjct: 533 LAYVKPKIGTNKFGGSCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--T 590

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                IV+ +HDE+V E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 591 LRCCSIVMHIHDELVIEA--DPKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 220/711 (30%), Positives = 324/711 (45%), Gaps = 104/711 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           ++ L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D      +P +++
Sbjct: 4   INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D++V   A N++FER+   K L +   +    W C+ V +   GLP SL+     L
Sbjct: 64  NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRD 166
              +   K+ EGK LI  FC       P   T++N           +  W+ F  Y  RD
Sbjct: 124 GLEKQ--KLTEGKDLIKYFCT------PCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRD 175

Query: 167 VEATRELFKRLIPLSDGERDLW---LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           VE+   + +RL      E ++W    LDQ INDRG  ID+  V +  E+    R+KL   
Sbjct: 176 VESEMLIQQRLSKFQVPE-NIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKL--- 231

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            + L   I          +M  +L   G++   + +  +  +L  +    L   L L R 
Sbjct: 232 -IALMQDITNLENPNSVQQMKDWLADNGLETDSLGKKVVAEMLKTAP-EPLGTVLEL-RQ 288

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   +  AV SDGR RG  QFYGA+RTGR+SG + Q QNLP+    +  L Q
Sbjct: 289 QLAKSSVKKYTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LEQ 346

Query: 343 TIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
               +  G   A  L       + S+ +R+  I   G K +VAD + IEARV+AW+AGE 
Sbjct: 347 ARALVRSGNFDALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEK 406

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS- 453
           W++  F  G DIY  + ++ FN P++K  V+   R  GK+ ELALGY G     K+M + 
Sbjct: 407 WRLNVFQKGGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMGAL 466

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G++ ++    V                                          AWR  
Sbjct: 467 EMGIEEEELQPLV-----------------------------------------TAWRQS 485

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  + +LW D+       V++    +   +  + +  M      + IVLPS RRL Y   
Sbjct: 486 NPNITKLWWDVDRAVKTCVKQKTPTATHGIKFIYQSGM------LFIVLPSGRRLAYVKP 539

Query: 574 KGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           +   +   +          T +  R  +YG K  ENIVQAISRDILC  M+  T     I
Sbjct: 540 RMGENMFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSI 597

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDEI+ E       S+  +C  M K P+WA GL L A+GYE + Y+K
Sbjct: 598 VAHVHDEIIIEADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 220/713 (30%), Positives = 322/713 (45%), Gaps = 106/713 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   VK+ D      +P ++ 
Sbjct: 1   MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D++V   A N+ FERI   K LG      +    W C+ V +   GLP SL+   +
Sbjct: 61  DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCK 164
            L   +   K+ EGK LI  FC       P + T+ N            + W+ F  Y  
Sbjct: 121 VLGLEKQ--KLTEGKELIKYFCT------PCNPTKVNGGRMRNLPHHDTEKWERFKAYNI 172

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVEA  ++  RL   P+ D   D + LDQ INDRG ++D+D V K  E+    R+ L  
Sbjct: 173 RDVEAEMQIQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMT 232

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            +  LT   + +      ++ +L    GI+   + +  + +++    +     +++  R 
Sbjct: 233 KMQVLTS--LTNPNSVVQMKGWL-SDNGIETETLGKKAVAALIDE--VPDEMSEILALRQ 287

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   +  +V  DGR+RG  QFYGA+RTGR++G + Q QNLP+     E L +
Sbjct: 288 KLAKSSVRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHM--EDLAE 345

Query: 343 TIQALNRGETIADPLGLASD--------CVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
               +  G+   D L L  D         +R+  I +  +  +VAD + IEARV+AW AG
Sbjct: 346 ARGLVRSGDY--DSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAG 403

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           E W+   FA G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M 
Sbjct: 404 ESWRADVFAKGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG 463

Query: 453 S-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           +   GL                            +++ PE                 AWR
Sbjct: 464 ALEMGL---------------------------AEEELPELV--------------SAWR 482

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY- 570
             +  +++ W D+       ++   S +   V    R  M      + I LPS R L Y 
Sbjct: 483 CSNPNIVRFWWDVDSAVKKAIKSKTSTATHGVHFSCRSGM------LFITLPSGRVLSYV 536

Query: 571 SDVKGDCSYLNT--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
               G+  +           +T +  R  +YG K  ENIVQA SRDIL   MK  T    
Sbjct: 537 KPCMGENKFGGESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMK--TLRCC 594

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            IV  VHDEI+ E    P  S+  +C  M + P WA+GL L+A+GYE + Y+K
Sbjct: 595 SIVAHVHDEIIIEA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 216/711 (30%), Positives = 332/711 (46%), Gaps = 104/711 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+  ++P  ++
Sbjct: 1   MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +   +    W C+ V + T GLP SL++    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN  +           WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
              E+ ++L   P+   E + + +DQ INDRG RID  LV   +K Q +   +  +  + 
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKK 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L    GI    +S+ ++  +L  +  T + + L L +L 
Sbjct: 233 LTGLAN-----PNSPLQLKDWLHQ-QGIKTDSLSKASVAQLLQTTTGT-VHQVLALRQLL 285

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338
           S  S+I K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR      E + E
Sbjct: 286 SK-SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344

Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++ Q  + AL    +++ D L   S  +R+  I S      VAD + +EARV+AW++ E 
Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-AS 453
           W+ ++FA  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M A+
Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT 461

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
           + GL                             D+ P                 + WR  
Sbjct: 462 NLGL---------------------------TDDELPPLV--------------QMWRNA 480

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              ++Q W D+ +      +E       +  +  + + R     + + L S R L Y   
Sbjct: 481 SPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPQP 534

Query: 574 KGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           K   +   + +   M         R  TYG KL ENIVQA SRD+L   M+     G  +
Sbjct: 535 KIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPV 594

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ +HDE V + P     S+ T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 595 VMHIHDEAVIDAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 215/711 (30%), Positives = 333/711 (46%), Gaps = 104/711 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+  ++P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +   +    W C+ V + T GLP SL++    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN  +           WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
              E+ ++L   P+   E + + +DQ INDRG RID  LV   +K Q +   +  +  ++
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L     I    +S+ ++  +L  +  T + + L L +L 
Sbjct: 233 LTGLAN-----PNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQTTTGT-VHQVLALRQLL 285

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338
           S  S+I K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR      E + E
Sbjct: 286 SK-SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344

Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++ Q  + AL    +++ D L   S  +R+  I S      VAD + +EARV+AW++ E 
Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-AS 453
           W+ ++FA  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M A+
Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT 461

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
           + GL                             D+ P                 + WR  
Sbjct: 462 NLGL---------------------------TDDELPPLV--------------QMWRNA 480

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              ++Q W D+ +      +E       +  +  + + R     + + L S R L Y   
Sbjct: 481 SPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPQP 534

Query: 574 KGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           K   +   + +   M         R  TYG KL ENIVQA SRD+L E M+        +
Sbjct: 535 KIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTV 594

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ +HDE V + P     S+ T+  LMT+ P WA GL L A G+ +  Y+K
Sbjct: 595 VMHIHDEAVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score =  273 bits (697), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 219/719 (30%), Positives = 337/719 (46%), Gaps = 114/719 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ETRS   + K GV+ YAE     I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKK---TLGIDI-----------------PSKRWICTSV 98
             L DE+V+  A N+ FER+   +    LGI +                     W CT V
Sbjct: 61  DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY-DCTRANHVQAWQ 157
            +   GLP SL      L   E   KM EGKALI  F      +PP+ + T A     W 
Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQ--KMNEGKALIRYF-----STPPFHEPTGAK----WD 169

Query: 158 LFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           LF  Y +RDVE    + KRL   P+     + ++LDQ INDRG R+D+ LV    ++  +
Sbjct: 170 LFKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVR 229

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
            ++KL + +  LT   + +      ++ +L    G++   + + ++ ++L+  N+    K
Sbjct: 230 TKEKLTDRLKTLTS--LENPNSVTQMKAWL-KEQGVETESLDKKSVTALLA--NVPDPLK 284

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-- 333
           +++  R   + S++ K   +   V SDGR RG  QFYGA+RTGR+SG   Q QNLP+   
Sbjct: 285 EVLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHL 344

Query: 334 ---ERSEEILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
              E +  ++ Q +  AL    E++ D L   S  +R+  I+  G+K +VAD + IEARV
Sbjct: 345 ADLEYARSLVRQGSFAALELLYESVPDVL---SQLIRTAFISKEGRKFIVADFSAIEARV 401

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAK 446
           L+W+A E W++  FAN  DIY  T  + F+  + K  +    R  GK+ EL+ GY G   
Sbjct: 402 LSWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVG 461

Query: 447 VFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
             K   +   G+  ++ +  V                                       
Sbjct: 462 ALKAFGALESGMKEEELNPLV--------------------------------------- 482

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              AWRA +  ++  W  +       ++E     + +V +  R + +     + I LP  
Sbjct: 483 --DAWRAANPNIVDFWWAVDRATKDCIKE----RSTKVTHGIRFIYQGSM--MFIELPCG 534

Query: 566 RRLVYSDVK-GDCSYLNTATSQL--------MRERTYGGKLTENIVQAISRDILCEGMKN 616
           RRL Y   + G+  +   + + +         R  +YG KL EN+ QAISRDILC  M+ 
Sbjct: 535 RRLAYVKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQ- 593

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            T    DIV  VHDE++ E  +    S+  +C  M + P WA GLPL+A+G+E + Y+K
Sbjct: 594 -TLRTMDIVAHVHDELIIECDER--VSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 211/710 (29%), Positives = 326/710 (45%), Gaps = 102/710 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + G + YA+     + L  YA D  PVK+ D T+   +PS ++
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                K+  GK L+  FC           T+AN  +           WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCTSC------KPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
              E+ ++    P+   E + + +DQ INDRG RID  LV   +K Q+    +  +  + 
Sbjct: 173 VEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQ 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L    G++   +++ ++  +L  +  T + + L L +L 
Sbjct: 233 LTGLAN-----PNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT-VHQVLALRQLL 285

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S  S++ K   + +A+  DG + G LQFYGA+RTGRW+G + Q QNLPR    +  L + 
Sbjct: 286 SK-SSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEA 342

Query: 344 IQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
              + +G T A  +       + S  +R+  I S G    VAD + +EARV+AW++GE+W
Sbjct: 343 RALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEW 402

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-ASH 454
           +  AFA  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M A+ 
Sbjct: 403 RQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK 462

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            GL                             D+ P                 + WR   
Sbjct: 463 LGL---------------------------TDDELPPLV--------------QMWRNAS 481

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             ++Q W D+ +      +E       +  +  + + R     + + L S R L Y   K
Sbjct: 482 PHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYR--SGCMFLRLRSGRYLCYPQPK 535

Query: 575 GDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
              +   + +   M         R  TYG KL ENIVQA SRD+L   M+     G  +V
Sbjct: 536 IGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVV 595

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + +HDE V + P     S+ T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 596 MHIHDEAVIDAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 222/712 (31%), Positives = 326/712 (45%), Gaps = 106/712 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ + IDIET S   L K GV+ YAE     I L  Y+ D   V++ D      +P +++
Sbjct: 1   MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D++V   A N++FER+   K L +   +    W C+ + +   GLP SL+     L
Sbjct: 61  NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRD 166
              +   K+ EGK LI  FC       P   T++N           +  W+ F  Y  RD
Sbjct: 121 GLEKQ--KLTEGKDLIKYFCT------PCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRD 172

Query: 167 VEATRELFKR----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           VEA   + +R    L+P +  E   + LDQ INDRG  ID+  V   Q ++  E  +  E
Sbjct: 173 VEAEMSIQQRFSKFLVPENIWEE--YHLDQEINDRGIAIDMTFVK--QAVVMDEHSR--E 226

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            ++ L   I          +M  +L   G++   + +  +  +L  +    L   L L R
Sbjct: 227 KLMALMQDITNLENPNSVQQMKDWLADNGLETDTLGKKAVAEMLKTAP-EPLGTVLEL-R 284

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              + S++ K   +  AV +DGR RG  QFYGA+RTGR+SG + Q QNLP+    +  L 
Sbjct: 285 QQLAKSSVKKYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LE 342

Query: 342 QTIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           Q    +  G   A  L       + S+ +R+  I   G K +VAD + IEARV+AW+AGE
Sbjct: 343 QARALVRSGNFDALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGE 402

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            W+I  F NG DIY  + ++ FN P++K  V+   R  GK+ ELALGY G     K+M +
Sbjct: 403 KWRIDVFQNGGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGA 462

Query: 454 -HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G++ ++    V                                          AWR 
Sbjct: 463 LEMGIEEEELQPLV-----------------------------------------TAWRQ 481

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            +  + +LW D+       V++        +  + +  M      + I LPS RRL Y  
Sbjct: 482 SNPNITKLWWDVDRAVKTCVKQKTPTETHGIKFIYQSGM------LFIALPSGRRLAYVK 535

Query: 573 VK-GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
            + G+  +   +        T +  R  +YG K  ENIVQAISRDILC  M+  T     
Sbjct: 536 PRMGENMFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCS 593

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV  VHDEI+ E       S+  +C  M K P+WA GL L A+GYE + Y+K
Sbjct: 594 IVAHVHDEIIIEADMGT--SLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 213/722 (29%), Positives = 333/722 (46%), Gaps = 110/722 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L IDIET S   L K GV+ Y+E +   + L AY+ D   V + D     ++P ++L
Sbjct: 4   IGTLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEIL 63

Query: 59  QYLRDETVMCVAHNSLFERILF------------------KKTLGIDIPSKRWICTSVLA 100
           Q L D++V+  A N+ FER+                    + ++G  +    W C+ + +
Sbjct: 64  QALVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWS 123

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN--------- 151
              GLP SL+     L   E   K++EGK LI  FCK      P   T+ N         
Sbjct: 124 AYMGLPLSLEGVGAVLGLEEQ--KLKEGKDLIRYFCK------PCAATKVNGGRTRNLPE 175

Query: 152 HV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           H    W+LF  Y KRDVE    + K+L   P+ +   + + LDQ INDRG  +D+D+V  
Sbjct: 176 HAPDKWELFKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVEN 235

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
              + A  +  L   +  LTD  + +      ++ +L    G+D   + +  +  +L   
Sbjct: 236 AIRIDAISKATLMATMQDLTD--LENPNSVAQMKGWL-AAKGVDTDSLDKKAVIELLK-- 290

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +     D++  R   + S++ K   +  AV  DGR RG  QFYGA+R+GRW+G + Q Q
Sbjct: 291 TVPTDVADVLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQ 350

Query: 329 NLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGI 384
           NLP+    +  + + I      E +     +  G+ S+ +R+  I   G K  VAD + I
Sbjct: 351 NLPQNHMEDLDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAI 410

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQ 442
           EARV+A +A E W++K FA+  DIY  + +  F  P++K  +    R  GK+ ELALGY 
Sbjct: 411 EARVIAHLAKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYG 470

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           G      +M +   LD+    + ++                                   
Sbjct: 471 GSVGALTSMGA---LDMGLAEEELQP---------------------------------- 493

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
              +  AWRA +  ++Q W D+       ++E  +     +  + +  M      + IVL
Sbjct: 494 ---LVDAWRAANPNIVQFWWDVDNAVKRAIKERTATKTHGIRFIYKSAM------LFIVL 544

Query: 563 PSSRRLVY-------SDVKGD-CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEG 613
           PS RRL Y       +   G+  +Y    T+ +  R  +YG K  ENIVQAISRDILC  
Sbjct: 545 PSGRRLAYVKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYA 604

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++  T +   IV  VHDE++ E       S+  +C  M + P W +GL L+A+GYE + Y
Sbjct: 605 LR--TLSHCFIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFY 660

Query: 674 RK 675
           +K
Sbjct: 661 KK 662


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 217/707 (30%), Positives = 326/707 (46%), Gaps = 96/707 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIE+ S   L K GV+ YAE     I L AY+ D  PV + D  +   +P  + 
Sbjct: 1   MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D+ V+  A N+ FER    + L   I    W C+ V +   GLP SL+ A +    
Sbjct: 61  QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
            +   K++EGK LI  FCK      P   T+ N            + W  F  Y +RDVE
Sbjct: 121 DK--KKLQEGKDLIRYFCK------PCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             + +  ++   P+ + E   ++LDQ INDRG  +D   V          R+ L   +  
Sbjct: 173 TEQAIQDKISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRT 232

Query: 227 LTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           LT    +       ++M  +L   G++   + +  +  +L  +         I  +LA S
Sbjct: 233 LT----KLENPNSVMQMKDWLAEQGVETGALDKAAVHELLKSAQGDVAEVLTIRQKLAKS 288

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR------QERSEEI 339
             ++ K   + +    D R RG +QFYGA+R+GR++G + Q QNLP+      +E  + +
Sbjct: 289 --SVKKYTAMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLV 346

Query: 340 LTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
               ++AL+    ++ D   L S+ +R+  I     + +VAD + IEARV+AW+AGE W+
Sbjct: 347 RASNLEALDMLYPSVPD---LLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWR 403

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCG 456
            + FA    IY  + ++ FN P++++ K    R  GK+ ELALGY G     + M +   
Sbjct: 404 NEVFATHGKIYEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGA--- 460

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
           LD+    + +K     + W QA        W  DQ  + AVK +   +            
Sbjct: 461 LDMGVEEEELK--PLVQAWRQANPKIVQFWWAVDQAAQKAVKQRTTTS------------ 506

Query: 514 HQGVLQLWKDLTEGFACVVQEG----GSISARRVANV-PRLVMRRHKRDVHIVLPSSRRL 568
                      T G +   Q G    G  S R ++ V P +V+    R+           
Sbjct: 507 -----------THGISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGRE----------- 544

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
                 G C     AT +  R  TYG KL ENIVQA+SRD+L   M+   + GY IV+ V
Sbjct: 545 ------GLCFEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHV 598

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE+V E     + +V  +C+LMT  P W+ GL LKAEGY    Y+K
Sbjct: 599 HDEVVVEAKQ--HVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 223/727 (30%), Positives = 330/727 (45%), Gaps = 118/727 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D   V + D  +   +P  ++
Sbjct: 1   MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60

Query: 59  QYLRDETVMCVAHNSLFERIL---FKKTLGIDIPS-----------------KRWICTSV 98
             L D+TV+  A N+ FER+    + + LG+ +                   + W C+ V
Sbjct: 61  DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC----TRANHVQ 154
            A T GLP SL+     L   +   K+ EGK LI  F   S+   P       TR +   
Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQ--KLTEGKDLIKYF---SVPCAPTKANGGRTRNHPFH 175

Query: 155 A---WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A   W+ F +Y  RDVE    +  RL   P+ +   D + +DQ INDRG R+D+DLV + 
Sbjct: 176 APDKWEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEA 235

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
            E+  + R +L   +  +T   + +      ++ +L    G++   + +  +  ++  + 
Sbjct: 236 IEMDTRSRSELTAAMKDMT--ALDNPNSVQQMKQWLS-DNGLETDSLGKKVVAELIKTAP 292

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
             +L   L L R   + S++ K  T+  AV  DGR RG   FYG +RTGRW+G + Q QN
Sbjct: 293 -PELQTVLEL-RQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQN 350

Query: 330 LPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           LP+    +  L      +  G         E + D L   S  +R+  I  +G +  V+D
Sbjct: 351 LPQNHLPD--LADARALVKSGNFDAVKLLYEDVPDTL---SQLIRTAFIPKDGTQFYVSD 405

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELA 438
            + IEARV+AW AGE W+ K F  G DIY  + ++ F+ P++K  ++   R  GK+ ELA
Sbjct: 406 FSAIEARVIAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELA 465

Query: 439 LGYQGGAKVFKTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           LGY G     K M A   GL                            +D+ P       
Sbjct: 466 LGYGGSVGALKAMGAIEMGLS---------------------------EDELPPLV---- 494

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
                      AWR  +  +++ W D+       V+   + S+  +    R  M      
Sbjct: 495 ----------DAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYGLTFSCRSGM------ 538

Query: 558 VHIVLPSSRRLVYSDVK-------GDC-SYLNTATSQLMRE-RTYGGKLTENIVQAISRD 608
           + I LPS R L Y   K       G+C +Y    +++   +  +YG K  ENIVQA SRD
Sbjct: 539 LFITLPSGRNLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRD 598

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668
           ILC  MK  T     IV+ +HDE+V E    P+ S+  LC  M + P WAKGL L+A+GY
Sbjct: 599 ILCYAMK--TLRCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGY 654

Query: 669 EAKRYRK 675
               Y+K
Sbjct: 655 VTPFYKK 661


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 210/697 (30%), Positives = 324/697 (46%), Gaps = 79/697 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   +   GV  Y +     I L AY+ D   V+L D  +   +P+ +L  L
Sbjct: 83  LSIDIETYSDNEITN-GVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKILDAL 141

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  ++  A N+ FER+   K LG+ +   +W CT + A   GLP+SL++    L     
Sbjct: 142 TDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKLKHK 201

Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKR- 176
             K+ EG  LI  F   CK +  +         H    W  F  YC RDVE  + + ++ 
Sbjct: 202 --KLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRKV 259

Query: 177 ----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
               L P++  ER L++ DQT+ND+G  ID +L      +  + + +L  ++ ++T+  +
Sbjct: 260 CNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN--L 317

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G  +  +++   K + + +  ++  K ++  R  SS +++ K 
Sbjct: 318 ENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGA--SEDVKRVLYLRSMSSKTSVKKY 375

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             ++ A  SD +L   LQFYGA +TGRW+G + Q  NLPR    +  L + +   N  E 
Sbjct: 376 EAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKNDFEL 434

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
              T  +   + S  +R+  IA     L V D + IEARV+AW+AGE+W++K F     I
Sbjct: 435 LELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGSGRI 494

Query: 409 YVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F      ++ +   R  GK+ ELALGY+GGA   K M    G D    S   
Sbjct: 495 YEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIM----GADKMGLSD-- 548

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                  PE A            +   WR     +++LW+D+  
Sbjct: 549 -----------------------PEIAQ-----------IVSGWRNSSPNIVKLWRDVER 574

Query: 527 GFACVVQEGGSISARRVANVPR--LVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL- 580
                     +I + R+  + +  L+ R+    + I LPS R L Y   K       Y+ 
Sbjct: 575 A------AKEAILSDRIIKLKQGGLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYMS 628

Query: 581 -NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-D 638
            N  T Q +   TYGGKL ENIVQAI+RD L E +    K GY+I   VHDEI++E P D
Sbjct: 629 QNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPTD 688

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  + ++     ++A  LPLK EGY    Y K
Sbjct: 689 ESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 209/711 (29%), Positives = 325/711 (45%), Gaps = 91/711 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G++ YA  +   I L AY+ D   VK+ D  +   +P  ++
Sbjct: 1   MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D+ ++  A+N+ FE     +  G     ++W  T       G  + L     A+  
Sbjct: 61  EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119

Query: 119 SEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +   K   GKALI  FC          G + + P+     +  + W+LF  YC +DV  
Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPH-----HEPEKWELFKNYCIQDVVT 174

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDEDI 224
             E++KRL   P+   E++LW+LDQ IN  G +ID +LV   L + +++  E   L E+ 
Sbjct: 175 ETEIYKRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAE---LTEEA 231

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
           +++T   + +      L  +L   TG D+ ++ +GT+  ++      +  + L + R   
Sbjct: 232 IQVTG--LDNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDKEAVRVLEI-RQEL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + ++I K   + EA+  DGR+RG LQFYGA+RTGRW+G + Q QNLPR         + I
Sbjct: 289 AKTSIKKYVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREI 348

Query: 345 QALNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 + +    G  SD     +R+  + S G K VVAD + IEARV+AW+AGE W+ +
Sbjct: 349 VKSQDADFLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQE 408

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMAS-H 454
            FA    IY  + ++ F  PI+ + K       R  GKV ELALGY G +     M +  
Sbjct: 409 VFATHGKIYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMGALD 468

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            GL+ ++    V+                                          WR  +
Sbjct: 469 MGLEEKELPDVVRR-----------------------------------------WRNAN 487

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           + +  LW  +      +++ G +   + +     + +   +  + I LPS R+L Y    
Sbjct: 488 KRITDLWYGIENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPH 547

Query: 575 --------GDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
                       Y  +N  T +   + TYGGKL ENIVQAISRD L   +K     G   
Sbjct: 548 LKENRFGSNALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQT 607

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ +HDE V +    P   +  +C LM +   WA GL LKA G+E+  Y K
Sbjct: 608 VMHIHDEAVIDA--DPNVDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 214/713 (30%), Positives = 332/713 (46%), Gaps = 98/713 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET S   L   GV+ Y E     + L AYA+DD+PV++ D T    +P  ++
Sbjct: 9   MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V+  A N+ FER   KK  GI     +W CT+V A   GLP  L+     L  
Sbjct: 69  HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128

Query: 119 SEHLTKMEEGKALIARF---CKGSI-------DSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                K   GK LI  F   CK +        + PP+     + ++ W+ +  Y  +DV 
Sbjct: 129 EAQ--KDTRGKNLIKYFSVPCKPTKANGGRTRNHPPH-----HDMEKWEQYKAYNIQDVV 181

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             RE+ ++L   P+   E DLW LDQ INDRG ++D  L  +  +   Q +  L ++   
Sbjct: 182 VEREVRRKLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKD 241

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +T   + +      L+ +L    G++  D + +  + ++L  +      + L + R    
Sbjct: 242 ITQ--LENPNSLTKLKEWL-AEQGLETPDGLGKEHMPTLLVQAPDEDTRRVLQI-RQELG 297

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            +++ K N ++ ++ +DGR RG LQF GA+RTGRW+G + Q QNLP+ + +   L    +
Sbjct: 298 KTSVDKYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNA--LWMARE 355

Query: 346 ALNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            L  G     E +   L  + S  +R+  I S G + +V+D + IEAR++AW+A E W +
Sbjct: 356 VLKSGDFDLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVL 415

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASH 454
             F +   IY    ++ F  P++ + K     E RA GKV  LA GYQGG      M + 
Sbjct: 416 NVFQDHGKIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMGA- 474

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                         ++   PE    ++L G     + K WR  +
Sbjct: 475 ------------------------------LKSGIPE----EELPG-----IVKRWRKAN 495

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV-LPSSRRLVYSD- 572
             +++LW    E     V+E      +R   +   V  R+K       LPS R L Y + 
Sbjct: 496 PRIVKLWYAAEEAALTAVRE------KRTVPLAHGVKYRYKSGTLFADLPSGRSLAYVNP 549

Query: 573 -VKGDCSY---------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
            +K D ++         ++    + M  RTYGG+L EN+VQAI+RD L E +       Y
Sbjct: 550 RIKPDPNFGKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEY 609

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             V+ VHDE+V + P     SV  +  +M++   WA GLPL A G+E + Y+K
Sbjct: 610 RTVMHVHDEVVLDVP-IGTGSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 218/714 (30%), Positives = 320/714 (44%), Gaps = 98/714 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIETRS   + K G + YA+     I L AY W+++PVK+ D      +P  L+
Sbjct: 1   MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  V+  A+N+ FE        G + P ++W CT       G  + L     A+  
Sbjct: 61  QALADPNVIKHAYNAAFEWYCLN-CAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119

Query: 119 SEHLTKMEEGKALIARFC--------KGS--IDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +   K+  GKALI  FC         GS   + P +D  +      W+LF EYC +DV 
Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDK------WELFKEYCLQDVV 173

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             RE+ KRL   P+ + E  LW +D  +N  G R+D DL+     +     ++L ++ + 
Sbjct: 174 TEREILKRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAIS 233

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   +++      L  +L    G +  ++ + T+  +L   N  ++ + L + R     
Sbjct: 234 LTG--LQNPNSAAQLLQWL-RDNGTEADNLQKATVAELLGGINPNKVRRMLEI-RQQLGK 289

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE-RSEEILTQTIQ 345
           ++I K   +  A     R+RG  Q+YGA+RTGRW+G + Q QNLPR   ++ +     ++
Sbjct: 290 TSIKKYVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVK 349

Query: 346 ALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           A N          + D L   S  +R+  I S G K VVAD + IEARV+AW+AGE W  
Sbjct: 350 AKNYDGVRILYGNVPDTL---SQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVN 406

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMAS- 453
           + FA    IY  T ++ F  P+++++K       R  GKV  LALGYQGG      M + 
Sbjct: 407 EVFATHGKIYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMGAL 466

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH--HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
             GL  ++    V+       W QA      LW   +    AV +               
Sbjct: 467 QMGLTEEELPDIVQR------WRQANPRIKGLWYAIENAALAVMET-------------- 506

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A+ QG+  L             EG  I  +    V               LPS R+L Y 
Sbjct: 507 AQPQGINGL---------IFALEGDIIYGQSFLTV--------------RLPSGRKLFYP 543

Query: 572 DV--------KGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                     K    Y      T +     TYGGK+ ENIVQAI+RD L   ++     G
Sbjct: 544 KPFLKENRFEKMAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKG 603

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +V  VHDE++ + P     +V  +C LM +   WA GL LK  G+E+  Y K
Sbjct: 604 LQVVFHVHDEVIIDAPMET--TVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655


>gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
 gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
          Length = 653

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 218/717 (30%), Positives = 324/717 (45%), Gaps = 107/717 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D  P+   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L       K + GK LI  F      S P   T+ N           ++ WQ F +YC
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L 
Sbjct: 173 IRDVEVEMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +    +T   + +      L  +L    G+D+ ++ + T++  L  S  T  AK ++  R
Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKES--TGKAKKMLEIR 288

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L 
Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346

Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           +  + L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A
Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451
            E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M
Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   G++  +    V S                                         W
Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  +  ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y
Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539

Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +    
Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
 gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
          Length = 653

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 218/717 (30%), Positives = 325/717 (45%), Gaps = 107/717 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L       K + GK LI  F      S P   T+ N           ++ WQ F +YC
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L 
Sbjct: 173 IRDVEVEMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +    +T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  R
Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIR 288

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L 
Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346

Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           +  + L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A
Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451
            E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M
Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   G++  +    V S                                         W
Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  +  ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y
Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539

Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +    
Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score =  266 bits (680), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 230/724 (31%), Positives = 339/724 (46%), Gaps = 116/724 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D  +   +P  +L
Sbjct: 17  LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL---GIDI--------------PSKRWICTSVLAR 101
             L DETV   A N+ FERI   + L   GI++              PS  W CT + + 
Sbjct: 77  SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSS-WHCTMIWSA 135

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------- 151
           T GLP SL+N  + L   +   K+ EGK LI  FC       P + T+ N          
Sbjct: 136 TLGLPMSLENVGIVLGLDKQ--KLTEGKNLIKYFCL------PCNPTKVNGGRTRNKYFH 187

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             + W+ F  Y KRDVE    + ++L   P+ D     + LDQ INDRG  ID   V   
Sbjct: 188 DKEKWEQFKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESA 247

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
            +L  + +  L  ++ ++T   + +      +R +L    G+++  + +  +   L    
Sbjct: 248 IKLDLEVKTHLMSELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGKKEVAKELKTVG 304

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
             +LA+ L L R   + S++ K   +  A   D R RG  +FYGA+RTGR++G + Q QN
Sbjct: 305 -KELAEVLRL-RQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQN 362

Query: 330 LPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
           LP+       E    +    ++AL    E I D L   S  +R+  I   G K +VAD +
Sbjct: 363 LPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL---SQLIRTAFIPRTGLKFIVADFS 419

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALG 440
            IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K  V+   R  GK+ ELALG
Sbjct: 420 AIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALG 479

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y G     K M +   LD+                                   +D+L  
Sbjct: 480 YGGSVGALKAMGA---LDMG--------------------------------LTEDEL-- 502

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              + +  AWR+ +  V  LW D+       V E  S+   R  N+   V       + I
Sbjct: 503 ---QPLVDAWRSSNPMVTTLWWDVDRAVKQCVHEHVSV---RTHNI---VFTYKSGFLII 553

Query: 561 VLPSSRRLVYSDVKGD--------CSYLNT-ATSQLMRERTYGGKLTENIVQAISRDILC 611
            LPS R L Y   + +         +Y    +T +  R  +YG K  ENI QAI+RDIL 
Sbjct: 554 KLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILI 613

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M+  T   Y IV  VHDE + ET  +   SV ++C LM + P WA+GL L+A+GYE +
Sbjct: 614 YAMQ--TLKEYRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECE 669

Query: 672 RYRK 675
            Y+K
Sbjct: 670 FYKK 673


>gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30]
 gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30]
          Length = 653

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 216/711 (30%), Positives = 327/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y   + G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVIEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 216/727 (29%), Positives = 328/727 (45%), Gaps = 120/727 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D  PV++ D      +P +++
Sbjct: 1   MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKK------------------TLGIDIPSKRWICTSVLA 100
             L ++ V   A N+ FERI   +                  T+G  +    W CT + +
Sbjct: 61  AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----- 155
              GLP SL+     L   +   K+ EGK LI  FC+      P   T+AN  +      
Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQ--KLTEGKELIKYFCQ------PCAPTKANSGRTRNLPE 172

Query: 156 -----WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                W  F  Y  RDVE    + ++L   P+ D   + + LDQ INDRG  +D+DLV +
Sbjct: 173 NAPDKWASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQ 232

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             ++  + R +L   + KLT   + +      ++ +L    G+++  + +  +  +L  +
Sbjct: 233 AIDMDTRSRAELTAAMKKLT--ALDNPNSVQQMKQWLS-DNGLNVDSLGKKEVAEMLKTA 289

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   L+  +LA S  ++ K   + +AV +DGR RG  QFYGA+RTGRW+G + Q Q
Sbjct: 290 PAELQQVLLLRQQLAKS--SVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQ 347

Query: 329 NLPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVA 379
           NLP+    +  L +    +  G         E + D L   S  +R+  +   G K +V+
Sbjct: 348 NLPQNHLPD--LAEARALVRCGDFDGVELLYEDVPDTL---SQLIRTAFVPRPGYKFIVS 402

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMEL 437
           D + IEARVLAW AGE W+ + F  G DIY  + ++ F  P++K  V+   R  GK+ EL
Sbjct: 403 DFSAIEARVLAWFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAEL 462

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY G     K M                                         A++  
Sbjct: 463 ALGYGGSVGALKAMG----------------------------------------ALEMG 482

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           L     + +  AWR  +Q +++ W D+            ++     + +  +        
Sbjct: 483 LSEGELQPLVTAWRNSNQNIVKFWWDIDRAAM------NAVKYHMDSEICGIKFSYKSGM 536

Query: 558 VHIVLPSSRRLVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRD 608
           + I LPS RRL Y   K       G+C +Y     T +  R  TYG KL ENIVQA SRD
Sbjct: 537 LFITLPSGRRLSYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRD 596

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668
           ILC  M+  T +   I + +HDE+V E   +   ++ ++C  M + P+WA GL L+A+GY
Sbjct: 597 ILCYAMR--TLSHCFITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWANGLKLRADGY 652

Query: 669 EAKRYRK 675
           E   Y+K
Sbjct: 653 ETMFYKK 659


>gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
          Length = 653

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 216/711 (30%), Positives = 327/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y   + G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 653

 Score =  263 bits (673), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE+  I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score =  263 bits (673), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 211/713 (29%), Positives = 311/713 (43%), Gaps = 99/713 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D  PV   D T+    P  +D
Sbjct: 1   MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER+   +    ++P + W CT V     GLP+SL    
Sbjct: 61  YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             LN      K + GK LI  F      S P   T+ N            + WQ F +YC
Sbjct: 121 EVLNLQNQ--KDKAGKNLIRYF------SVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W LDQ INDRG ++   L+L   EL    + +L 
Sbjct: 173 VRDVEVEMSIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +   K+T   + +      L  +L    G+D+ ++ + T++  L ++  T  AK ++  R
Sbjct: 233 KQATKITG--LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKYA--TGKAKQMLEIR 288

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE---- 337
           L  S +++ K N + + +  D R+RG  QFYGA  TGRW+G   Q QNL +   S+    
Sbjct: 289 LQMSKTSVKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELN 347

Query: 338 ---EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
              + + +             P  L S  VR+   A  G  L V+D + IEARV+AW A 
Sbjct: 348 IARDFIKEQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAK 407

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMA 452
           E W++  F     IY  + A+ F  P+D + K    R  GKV ELALGYQGG    K M 
Sbjct: 408 EQWRLDVFNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMG 467

Query: 453 S-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           +   G+D  +    V S                                         WR
Sbjct: 468 ALDMGIDESELQGLVDS-----------------------------------------WR 486

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             +  ++  WK       C      ++  R+      L     K  + I LPS R L Y 
Sbjct: 487 KANPNIVAFWK------GCQDAAIETVRTRQTHLTHGLRFYMKKGFLMIELPSGRSLAYP 540

Query: 572 DVKGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
             +   +   +   + M         + +TYGGKL ENIVQA +RD+L   M      G+
Sbjct: 541 KARVGENSWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGF 600

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            IV  VHDE++ E PD     +  + ++M+K   WA+GL L ++G+ +  Y K
Sbjct: 601 SIVGHVHDEVIVEIPDGS-GGLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652


>gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 653

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE+  I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A]
 gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A]
          Length = 650

 Score =  263 bits (671), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 215/706 (30%), Positives = 324/706 (45%), Gaps = 95/706 (13%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P  +D   + 
Sbjct: 3   IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE    + 
Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T   +
Sbjct: 181 NKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ K 
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L + + 
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354

Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F  
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461
              IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G++  +
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               V S                                         WR  +  ++  W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSY- 579
           K      AC      ++ +R+  +   L     K  + I LPS R L Y   + G+ S+ 
Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                     LN   S+L   +TYGGKL ENIVQA +RD+L   +      G+ IV  VH
Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 604

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 653

 Score =  263 bits (671), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL]
 gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL]
          Length = 650

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 213/706 (30%), Positives = 321/706 (45%), Gaps = 95/706 (13%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D   + 
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE    + 
Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T   +
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ K 
Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L + + 
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354

Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F  
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461
              IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G++  +
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               V S                                         WR  +  ++  W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY- 579
           K      AC      ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                     LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 604

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649


>gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 653

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 215/717 (29%), Positives = 323/717 (45%), Gaps = 107/717 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L       K + GK LI  F      S P   T+ N           ++ WQ F +YC
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L 
Sbjct: 173 IRDVEVEMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +    +T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  R
Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKRA--TGKAKKMLEIR 288

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L  S +++ K N + + + +D R+RG  QFYGA  TGRW+G   Q QNL +   S+  L 
Sbjct: 289 LQMSKTSVKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346

Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           +  + L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A
Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451
            E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M
Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   G++  +    V S                                         W
Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  +  ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y
Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539

Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +    
Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 597 ASGFKIVGHVHDEVIVEIPKDSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 212/710 (29%), Positives = 331/710 (46%), Gaps = 105/710 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ETRS   + + GV+ Y  AE   I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKR--------WICTSVLARTNGLPS 107
             L D++V+  A N+ FER+   +    LG+   ++R        W CT V +   GLP 
Sbjct: 61  DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           SL      L   E   KM EGKALI  F      +PP+        + W+LF  Y +RDV
Sbjct: 121 SLAVVARVLGLEEQ--KMTEGKALIRYF-----STPPFHEPTG---EKWELFKSYNRRDV 170

Query: 168 EA----TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           E      + LFK  +P S  E   ++LDQ INDRG  +D+  V    ++ A  ++K+ + 
Sbjct: 171 EVEMAIQQRLFKYPVPQSVWEE--YVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDR 228

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT   + +      ++ +L    G++   + + T+ ++L+  N++ L K+++  R  
Sbjct: 229 LKTLTG--LENPNSVAQMKAWL-KEQGVETESLDKKTVAALLT--NVSALLKEVLELRQQ 283

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338
            + S++ K   +   V +D R RG  QFYGA+RTGR+SG   Q QNLP+      E +  
Sbjct: 284 LAKSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARS 343

Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++ Q    AL    E+++D L   S  +R+  I   G+K +VAD + IEARVL+W+A E 
Sbjct: 344 LVRQGNFAALELLYESVSDVL---SQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKER 400

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASH 454
           W++  FAN  DIY  T  + F+  + K  +    R  GK  ELA GY G     K     
Sbjct: 401 WRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG-- 458

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                                 A++  +     + +  AWR  +
Sbjct: 459 --------------------------------------ALESGMKEDELKPLVDAWRTAN 480

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             ++  W  +       ++E      R +     +        + I LPS RRL Y   +
Sbjct: 481 PNIVDFWWAVDRAAKDCIKE------RSITGTHGIKFIYQSGMMFIELPSGRRLAYVKPR 534

Query: 575 -GDCSYLNTATSQL--------MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
            G+  +   + + +         R  +YG KL ENI QAISRD+LC  M+  T    DIV
Sbjct: 535 IGENQFGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQ--TLRSMDIV 592

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             VHDE++ E  +    S+ + C  M + P WA+GL L+A+G+E + Y+K
Sbjct: 593 AHVHDELIIECDER--VSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640


>gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           132]
          Length = 653

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 217/717 (30%), Positives = 325/717 (45%), Gaps = 107/717 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L       K + GK LI  F      S P   T+ N           ++ WQ F +YC
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L 
Sbjct: 173 IRDVEVEMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +    +T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  R
Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIR 288

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L 
Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346

Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           +  + L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A
Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451
            E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M
Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   G++  +    V S                                         W
Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  +  ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y
Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539

Query: 571 SD-VKGDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
              + G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +    
Sbjct: 540 PKALVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
          Length = 653

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 216/717 (30%), Positives = 322/717 (44%), Gaps = 107/717 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L       K + GK LI  F      S P   T+ N           ++ WQ F +YC
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L 
Sbjct: 173 IRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                +T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  R
Sbjct: 233 NQAKHITG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIR 288

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L 
Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346

Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           +  + L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A
Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451
            E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M
Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   G++  +    V S                                         W
Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  +  ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y
Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539

Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +    
Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
 gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
          Length = 653

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 323/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
          Length = 653

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y   + G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35]
          Length = 650

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 215/712 (30%), Positives = 321/712 (45%), Gaps = 107/712 (15%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D   + 
Sbjct: 3   IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K + GK LI  F      S P   T+ N           ++ WQ F +YC RDVE
Sbjct: 123 QNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVE 174

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    
Sbjct: 175 VEMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKH 234

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S 
Sbjct: 235 ITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSK 290

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + 
Sbjct: 291 TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARD 348

Query: 347 LNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W+
Sbjct: 349 LIKDQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWR 408

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HC 455
           +  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   
Sbjct: 409 LDVFNTHGKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMGALEM 468

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G++  +    V S                                         WR  + 
Sbjct: 469 GIEENELQGLVDS-----------------------------------------WRNANP 487

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     
Sbjct: 488 NIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASV 541

Query: 575 GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
           G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ 
Sbjct: 542 GENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFK 598

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 599 IVGHVHDEVIVEIPKDSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224]
 gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224]
          Length = 653

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 213/711 (29%), Positives = 323/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT + +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
 gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
          Length = 650

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 213/706 (30%), Positives = 321/706 (45%), Gaps = 95/706 (13%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D   + 
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE    + 
Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T   +
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ K 
Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L + + 
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354

Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F  
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461
              IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G++  +
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               V S                                         WR  +  ++  W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY- 579
           K      AC      ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                     LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 604

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
 gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
          Length = 653

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 323/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 326/707 (46%), Gaps = 94/707 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L   GV+ YA      I L +Y + DEPV   D  +   +PS +L+ L
Sbjct: 5   LHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLRAL 64

Query: 62  RDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           RD   + VAHN+ FER+     L G  +    W CT V     GLP SL     AL    
Sbjct: 65  RDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGLD- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEAT 170
            + K +EGK LI  F K      P   T+AN         H  + W+ +G+Y + DVE  
Sbjct: 124 -VQKDKEGKRLIQYFSK------PCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVE 176

Query: 171 RELFKRLIPLSDGERDLWL---LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             +  +L  + +   D W     DQ IND G  +D+  V +  +L  + +K+    + +L
Sbjct: 177 TGISDKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRL 236

Query: 228 TDGIIRSSRQTYALRMYL----FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           T   + S  +   L+ +     + +  +D     E  L     H +  ++ + + L + A
Sbjct: 237 TG--VESVTKVQQLKAWAAAQGYPVESLD-KQHCEDYLNDPELHQDFPEVYRMIELYQEA 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
             G+A+ K + +   +  DG ++G L+F GA  T RW+G   Q QNLPR     + L   
Sbjct: 294 G-GAAVAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAA 352

Query: 344 IQALNRGETIA-----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            Q + +G+T+      +P+ + +  VR+ +      +  V+D + IEARV+AW AGE W 
Sbjct: 353 RQIVAKGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWV 412

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGL 457
           +KAF +GEDIYV T +K ++   ++ ++  R  GK   LALGYQGGA     M +   G+
Sbjct: 413 LKAFEDGEDIYVATASKMYHVTGEE-AEAMRQKGKQATLALGYQGGANALIVMGALRAGI 471

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                       +++ PE                + WR  +  +
Sbjct: 472 P---------------------------EEELPELV--------------QLWRKANPNI 490

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV---LPSSRRLVYSDVK 574
           + LW  + +     +  GG  + R V    +LV+  +K D H++   LPS R+L Y D K
Sbjct: 491 VNLWHTVDKAARMAINNGG--AKRYVLADGKLVI-SYKGDEHVLQVQLPSGRKLNYFDCK 547

Query: 575 ---GDCSYLNTATSQLMR--ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                 SYL        R    TYGGKLTEN+VQA SRD+L   +      G   V  VH
Sbjct: 548 IRDNKISYLKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKN-PSWAKGLPLKAEGYEAKRYRK 675
           DE ++  P+     +  + +LMT   P WA GLPL +EG   K YRK
Sbjct: 608 DETINIVPEGT--KIEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652


>gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
 gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
          Length = 653

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 213/711 (29%), Positives = 323/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WA+GL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652


>gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 653

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 213/711 (29%), Positives = 323/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   +     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2]
 gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 650

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 214/706 (30%), Positives = 322/706 (45%), Gaps = 95/706 (13%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D   + 
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE    + 
Sbjct: 123 QSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T   +
Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ K 
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L + + 
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354

Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F  
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461
              IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G++  +
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               V S                                         WR  +  ++  W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSY- 579
           K      AC      ++ +R+  +   L     K  + I LPS R L Y   + G+ S+ 
Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                     LN   S+L   +TYGGKL ENIVQA +RD+L   +      GY IV  VH
Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVH 604

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 224/735 (30%), Positives = 333/735 (45%), Gaps = 134/735 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  YA D  PV++ D  +  ++P ++L
Sbjct: 1   MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98
             L D+TV   A N+ FER+   + L      +D               +    W C+ V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151
            +   GLP SL+     LN      KM+EG+ LI  FC       P   T+AN       
Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCI------PCKETKANGGRTRNL 172

Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               +  W LF  Y KRDVE    + +RL   P+     + + LDQ INDRG  IDL+L 
Sbjct: 173 PQHALDKWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELA 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +   L A+ R+ L           + + ++   L     +I  +D ++   G     L 
Sbjct: 233 KQAVALDAKSRESL-----------MAALKERTGLENPNSVIQMLDWLE-QHGLKTDSLG 280

Query: 267 HSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
             N+ +L K        ++L R   + S++ K   +      DGR RG  QFYGA+RTGR
Sbjct: 281 KKNVQELLKTAQEPLRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGR 340

Query: 320 WSGCVFQPQNLPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASN 372
           ++G   Q QNLP+       E  E +     +AL+   ++I D L   S  +R+  +   
Sbjct: 341 FAGRHIQLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVL---SQLIRTAFVPRA 397

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRA 430
           G K VV+D + IEARV++W+AGE WK + FA G+DIY +T ++ F  P+ K  ++   R 
Sbjct: 398 GMKFVVSDFSAIEARVISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQ 457

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
            GK+ ELA GY G     K M +   LD+                               
Sbjct: 458 KGKIAELACGYGGSVGALKAMGA---LDM------------------------------- 483

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
              + ++ +G     + ++WR+ +  ++  W  +       +++   +    +    +  
Sbjct: 484 --GIPEEELGN----LVQSWRSANPHIVDFWWQVDGAVKTTIKQRIPVWVNNIRFFCQSG 537

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENI 601
           M      + I LPS RRL Y   + G+  +           AT +  +  +YG K  ENI
Sbjct: 538 M------LFIELPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENI 591

Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKNPSWAKG 660
           VQ ISRDILC  M+  T     IV  VHDE++ E P DT   SV  +C  M + P WA+G
Sbjct: 592 VQGISRDILCYAMQ--TLRCCAIVGHVHDELIIECPKDT---SVDAICEEMGRTPPWAEG 646

Query: 661 LPLKAEGYEAKRYRK 675
           L L+A+GY  + Y+K
Sbjct: 647 LVLRADGYACEFYQK 661


>gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 650

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 212/706 (30%), Positives = 321/706 (45%), Gaps = 95/706 (13%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D   + 
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE    + 
Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T   +
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ K 
Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L + + 
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354

Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F  
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461
              IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G++  +
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               V S                                         WR  +  ++  W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY- 579
           K      AC      ++ +R+  +   +     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                     LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 604

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 653

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 213/711 (29%), Positives = 324/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   +  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 213/714 (29%), Positives = 316/714 (44%), Gaps = 98/714 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G++ Y E  V  + L AYA+D   V + D  +   +P  ++
Sbjct: 1   MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  V+  A+N+ FE I      G     ++W CT +     G P+ L     AL  
Sbjct: 61  SDLNNPEVIKHAYNASFE-ITGLNRYGYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
            E   K+  GKALI  FC       P   T+ N           +  W LF EY  +DV 
Sbjct: 120 PEDKRKLSTGKALIRYFCV------PCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVV 173

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E ++RL   P+    +D W++D  +N RG ++D+DLV     +  Q + +L E  ++
Sbjct: 174 TEMEDYRRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQ 233

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS--NITQLAKDLILN---- 280
           +T     +SR          L+T I+  D S+  L+ +   +     Q+A+D +      
Sbjct: 234 ITGLTNPNSRNQ--------LLTWIN--DNSDLKLEKLTKETVAESLQIAEDQVAEVLHI 283

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           R A + S+I K  ++  AV +DGR+RG LQFYGA+RTGRW+G + Q QNLP        +
Sbjct: 284 RRALAKSSISKYESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHD--VPVAM 341

Query: 341 TQTIQALNRGETIADPLGLA------SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
              I+ +  G      L         S  +R+  +A  G  L V+D + IEARVL+W+A 
Sbjct: 342 DTAIRLVKNGNARGVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLAD 401

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           E W+   FA G DIY  + +  F  P++K  ++   R  GKV ELALGYQGG     TM 
Sbjct: 402 EKWRQDVFAKGGDIYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMG 461

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +            +K   T              +D+ P+   +              WR 
Sbjct: 462 A------------LKQGLT--------------EDELPDIVHR--------------WRG 481

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD-VHIVLPSSRRLVYS 571
            +  +   W D+      V+ +   +       + R     +  D + I LPS R+L Y 
Sbjct: 482 ANPRICGFWYDVDGAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYP 541

Query: 572 DV--------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
                     K    Y   A  +     TYGGKL ENI QAI+RD L   +    K GY 
Sbjct: 542 QPYINENQFGKPALHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYK 601

Query: 624 IVLTVHDEIVSETPDTPYF--SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            ++ +HDE+V E P        +  +  +M     WA GL L A+G+ +  Y K
Sbjct: 602 PLMHIHDEVVLEVPKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655


>gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47]
 gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47]
 gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 653

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y   + G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +      G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
 gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
          Length = 650

 Score =  259 bits (663), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 213/706 (30%), Positives = 322/706 (45%), Gaps = 95/706 (13%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D   + 
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE    + 
Sbjct: 123 QSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T   +
Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ K 
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L + + 
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354

Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F  
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461
              IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G++  +
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               V S                                         WR  +  ++  W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSY- 579
           K      AC      ++ +R+  +   L     K  + I LPS R L Y   + G+ S+ 
Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                     LN   S+L   +TYGGKL ENIVQA +RD+L   +      G+ IV  VH
Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 604

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
 gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
          Length = 653

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 212/711 (29%), Positives = 324/711 (45%), Gaps = 95/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK + ++         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + L
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352

Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            + +   D        P  L S  VR+   +  G +L V+D + IEARV+AW A E W++
Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRL 412

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456
             F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   G
Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           ++  +    V S                                         WR  +  
Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     G
Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545

Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + S+           LN   S+L   +TYGGKL ENIVQA +R++L   +     +G+ I
Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARELLAISIARLEASGFKI 602

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 217/715 (30%), Positives = 326/715 (45%), Gaps = 107/715 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     L  +A   D+ PV ++D  ++  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDFNKEK-LPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FERI     L    P            W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFG 160
           +     L   +   KM EG  LI  FC          G I + P+          W  F 
Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAP-----NKWSTFI 174

Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           +Y +RDVE    + +RL   P+ D   D +  DQ INDRG  ID+D V    ++ ++ + 
Sbjct: 175 DYNRRDVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKA 234

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+ E++  LT    R       L+M  +L   G+    + +  +K +L  ++ T  A+ L
Sbjct: 235 KIQEELKALT----RLENPNSVLQMIGWLREHGVTTDSLDKKVVKELLKTADETT-AQVL 289

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR----- 332
            L + A+  S++ K   +   V  DGR RG  QF+GA+RTGRW+G + Q QNLP+     
Sbjct: 290 KLRQQAAK-SSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPD 348

Query: 333 -QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +E  E   T  ++A    E + D     S  +R+  + S GKK +V D + IEARVL+ 
Sbjct: 349 LEEARELFGTGDLEAT---EFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFK 449
           +AGE W+ K F  G+DIY  + ++ F  P++K  +  E R  GK+ ELA GY G     K
Sbjct: 406 LAGERWRSKVFEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALK 465

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            M +   LD+                                  +KDK +    +    +
Sbjct: 466 AMGA---LDM---------------------------------GLKDKELRPLVD----S 485

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  +  ++  W D+       +++        +          +K  + I LPS R+L 
Sbjct: 486 WRQANPNIVLFWWDVDRAVKTAIKQHIQTETHGIQ------FEVNKGMLSITLPSGRKLA 539

Query: 570 YSDVK--------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
           Y   K           +Y  T T++   R  +YG K  ENIVQAISRDIL   MK   + 
Sbjct: 540 YVKPKIGENQFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE- 598

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            ++IV  VHDE++ E       S+  +  LM   P W   + L+A+GYE   Y+K
Sbjct: 599 -FNIVGHVHDEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 222/717 (30%), Positives = 324/717 (45%), Gaps = 111/717 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     L  +A   D+ PV ++D  ++  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDFNKEK-LPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FERI     L    P            W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFG 160
           +     L   +   KM EG  LI  FC          G I + P+          W  F 
Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAP-----DKWSAFI 174

Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           +Y +RDVE    + +RL   P+ D   D +  DQ INDRG  ID+D V    ++  + + 
Sbjct: 175 DYNRRDVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKA 234

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+ E++  LT G+         L+M  +L   G+    + +  +K +L    + +    +
Sbjct: 235 KIQEELKALT-GL---ENPNSVLQMIGWLREHGVTTDSLDKKAVKGLLK--TVDETTAQV 288

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR----- 332
           +  R  ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+     
Sbjct: 289 LKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD 348

Query: 333 -QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +E  E   T  ++A    E I D     S  +R+  + S GKK +V D + IEARVL+ 
Sbjct: 349 LEEARELFGTGDLEAT---ELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFK 449
           +AGE W+ K F  G+DIY  + ++ F  P++K  +  E R  GK+ ELA GY G     K
Sbjct: 406 LAGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALK 465

Query: 450 TMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            M +   GL  ++    V S                                        
Sbjct: 466 AMGALDMGLTEEELQPLVNS---------------------------------------- 485

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA-NVPRLVMRRHKRDVHIVLPSSRR 567
            WR  +  ++  W D+       V+E    S   +   V R ++        I LPS R+
Sbjct: 486 -WRLANPNIVLYWWDVDNAVKTAVKELIPTSTHGIQFEVKRGIL-------FITLPSGRK 537

Query: 568 LVYSDVK-GD-------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           L Y   + GD        +Y  T T++   R  +YG K  ENIVQAISRDIL   MK   
Sbjct: 538 LAYIKPRIGDNQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQ-L 596

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           KN + IV  VHDE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 597 KN-FKIVGHVHDEVIIECPIEQ--KLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650


>gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11]
          Length = 650

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 214/712 (30%), Positives = 320/712 (44%), Gaps = 107/712 (15%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D   + 
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K + GK LI  F      S P   T+ N            + WQ F +YC RDVE
Sbjct: 123 QSQ--KDKAGKNLIRYF------SMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVE 174

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               +  ++   P+++ E+  W+ DQ INDRG ++   L+L    L  Q +++L +    
Sbjct: 175 VEMTIANKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKH 234

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S 
Sbjct: 235 ITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSK 290

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L +  + 
Sbjct: 291 TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARD 348

Query: 347 LNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A E W+
Sbjct: 349 LIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWR 408

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HC 455
           +  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M +   
Sbjct: 409 LDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEM 468

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G++  +    V S                                         WR  + 
Sbjct: 469 GIEENELQGLVDS-----------------------------------------WRNANP 487

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y     
Sbjct: 488 NIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASV 541

Query: 575 GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
           G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +     + + 
Sbjct: 542 GENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASVFK 598

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 599 IVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 222/724 (30%), Positives = 331/724 (45%), Gaps = 134/724 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           ++ +D+ET S   + K GV+ YA  E   I   +Y+ +   V L D T++   P  L  +
Sbjct: 2   RIDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLKNH 59

Query: 61  LRDETVMCVAHNSLFERI----LFKK---TLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + +      A N++FERI     F+K   + G   P K W    V A+  GLP+SL+   
Sbjct: 60  ILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDP-KNWKDIMVHAQELGLPASLERCA 118

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L   E   K   GKALI  F      S P   T+AN            + W+ +GEY 
Sbjct: 119 SYLGLEEQ--KDTRGKALIRYF------SIPCKPTKANGGRTRNLPEHDPEKWEEYGEYN 170

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            +DV     + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L 
Sbjct: 171 VQDVVTQMAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLS 230

Query: 222 EDIVKLTDGIIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQL 273
            ++  +T     +SR      L+ + +   G+   D+      +EG LK +L        
Sbjct: 231 GELKAITGLANPNSRAQLLPWLKEHGYSANGLTKADVEQELKTAEGELKRVLEL------ 284

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                  +L ++ S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R 
Sbjct: 285 -------KLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARN 337

Query: 334 ------ERSEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEA 386
                 +    +  + I A+   E + D L       VR+ ++A +G    V+D + IEA
Sbjct: 338 YIKDLDDARGYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEA 394

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RV+AW AGE W++  F+    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG  
Sbjct: 395 RVIAWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPG 454

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M +         +  VK                           +++L G   +  
Sbjct: 455 ALKQMGA--------LNMGVK---------------------------EEELQGLVDD-- 477

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              WR  ++ ++Q WKD+    A +     +I +R    + +L  R  K  + I LPS R
Sbjct: 478 ---WRRANKKIVQFWKDVQR--AAI----KAIKSRAPIKLGKLRFRYRKGFLFITLPSGR 528

Query: 567 RLVYSDVK---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
            L Y+  K               GD +Y          + TYGGKL ENIVQA +RDIL 
Sbjct: 529 NLAYARAKVEPGDYGDKIIYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILA 581

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
           E +      G+ +V  VHDE + E       ++  +  LM + P WA+GLPL +EGY  K
Sbjct: 582 EALLRIEAAGHGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPDWAEGLPLNSEGYVTK 638

Query: 672 RYRK 675
            Y K
Sbjct: 639 YYMK 642


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/415 (37%), Positives = 225/415 (54%), Gaps = 16/415 (3%)

Query: 166 DVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           D+ ATRE+++ L    ++  E  LW LDQ IN RG  +D++L       +  E+K+L   
Sbjct: 3   DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L+  RL 
Sbjct: 63  TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRINDPDIPPALRELLSIRLQ 122

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S  ++  K   L +++S+DGRLRGT QF GASRTGRW+G +FQP NLPR       +   
Sbjct: 123 SCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDNG 182

Query: 344 IQALNRG--ETIADP-LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           I+AL  G  E I D  + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ 
Sbjct: 183 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 242

Query: 401 AFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           AF+      G+D+Y   YA+AFN   + V+K QR IGKVMEL LGY GG   F T A   
Sbjct: 243 AFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALAY 302

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            LDL + +             +A S +    +    + +  K+  T C+ +K+ WR  H 
Sbjct: 303 SLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAHT 361

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  W D+ +     +Q  G     R     +L +RR K  + I LPS R L Y
Sbjct: 362 QTVSFWYDIEDAVKQAIQSPGVAFKCR-----KLSVRRDKSWLRICLPSGRSLCY 411


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 209/715 (29%), Positives = 313/715 (43%), Gaps = 96/715 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-Y 60
           L IDIETRS   + K G + YA+     I L AY WDD PV++ D T   + P ++ +  
Sbjct: 6   LSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEEA 65

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRD  V+  A+N+ FE     +  G   P  +W CT       G  + L     A+   +
Sbjct: 66  LRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLPQ 124

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ----------LFGEYCKRDVEAT 170
              K+  GKALI  FC       P   T++N  + W           LF EYC++DV   
Sbjct: 125 DKQKLAVGKALIRYFCV------PCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ +RL   P+ + E  LW LD  +N  G R+D  L+     +     +KL  + V+LT
Sbjct: 179 HEILRRLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL-SHSNITQLAKDLILNRLA 283
                +S       +        D    L D+ + T++  L    N+ +    ++  R  
Sbjct: 239 GLDNPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQ 298

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE-RSEEILTQ 342
              +++ K   +  A     R+RG  Q+YGA+RTGRW+G + Q QNLPR   ++ +   +
Sbjct: 299 LGKTSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARE 358

Query: 343 TIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
            ++A N          + D L   S  +R+  I S G K VVAD + IEAR +AW+AGE 
Sbjct: 359 LVKAKNYDGLRILYGNVPDTL---SQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQ 415

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTM 451
           W  + FA    IY  T A+ F  P+++++K       R  GKV  LALGYQG       M
Sbjct: 416 WVNEVFATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAM 475

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   GL                            +D+ P+   +              W
Sbjct: 476 GALKMGL---------------------------TEDELPDIVTR--------------W 494

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  ++ +  LW  +      V+Q         +       +   +  + + LPS R+L Y
Sbjct: 495 RNANKRICGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYY 554

Query: 571 ------SDVKGDCSYLNTATSQLMR----ERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                  +  G  +    A  Q  R    + TYGGK+TENIVQAI+RD L   ++   + 
Sbjct: 555 PKPFLQENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQK 614

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           G   V  VHDE++ + P     +V  +C LM +   WA GL LK  G+E+  Y K
Sbjct: 615 GLQTVFHVHDEVIIDAPMET--TVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 210/705 (29%), Positives = 318/705 (45%), Gaps = 82/705 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET SP  +   GV+ Y+E  +  I L +YA+    V + D      +P D++
Sbjct: 1   MRHLNIDIETYSPNDI-SFGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+ + V+  A+N+ FE     +  G     ++W CT +     G P  L     AL  
Sbjct: 60  LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118

Query: 119 SEHLTKMEEGKALIARF---CKGSIDS-------PPYDCTRANHVQAWQLFGEYCKRDVE 168
           ++   K + G ALI  F   CK +  +       P +D  +      W  +  Y K+DV 
Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDK------WAAYIAYNKQDVV 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E ++RL   P+ +     W +D  +N  G  ID  LV     +  + +K L E+  +
Sbjct: 173 TEMECYRRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT     +SR    L  +L   T ++L  +++ ++ + ++ ++   LAK ++  R   + 
Sbjct: 233 LTGLSNPNSRNQ--LLDWLNSNTNLELEKLTKDSVAAAMTDAD--DLAKKVLTIRKKLAK 288

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQTIQ 345
           S++ K   ++ A   DGRLRGTLQFYGA+RTGRW+G + Q QNLPR   +  +     ++
Sbjct: 289 SSVSKYEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVK 348

Query: 346 ALNR---GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
           A NR   G    D     S  +R+ IIA  G  L VAD + IEARV+AW++GE W+ K F
Sbjct: 349 ASNRVGLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVF 408

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A G DIY  + +  F  P+ K  V+   R  GKV ELALGYQGG    K M +   LD+ 
Sbjct: 409 AEGGDIYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMGA---LDMG 465

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                    +++ P       ++G         WR     +++ 
Sbjct: 466 -----------------------LTEEELP------NIVGL--------WRQASPNIVKF 488

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK-RDVHIVLPSSRRLVYSDV------ 573
           W  + +     V  G  ++          V   +  R + I LPS R+L Y D       
Sbjct: 489 WYTVEKAAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNN 548

Query: 574 --KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
             K    +     +  + E TYGGKL ENI QA++RD L   +   + NG   ++ +HDE
Sbjct: 549 FDKEAVHFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDE 608

Query: 632 IVSETPDTPYFSVGTLCSLMTKNP-SWAKGLPLKAEGYEAKRYRK 675
            V E P         +       P  WA+GL L A G+    Y K
Sbjct: 609 AVIEVPKDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 217/716 (30%), Positives = 323/716 (45%), Gaps = 109/716 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     I L A + ++ PV ++D +++  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSKEK-LPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FER+     L    P            W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLF 159
           +     L   +   KM EG  LI  FC       P   T+ N         H    W  F
Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFC------VPCKPTKINGGRTRNLPHHAPDQWATF 173

Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            +Y +RDVE    + +RL   P+ D   D +L DQ INDRG  ID+D V    ++  + +
Sbjct: 174 IDYNRRDVEVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESK 233

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKD 276
            ++ E++  LT            L+M  +L   G+    + +  +K +L   +  + +K 
Sbjct: 234 AQIQEELKALTS----LENPNSVLQMIGWLREHGVTTDSLDKKAVKELLKTVD-DKTSKV 288

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           L L R  ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    
Sbjct: 289 LKL-RQQAAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLP 347

Query: 337 EEILTQTIQALNRG-----ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           +  L +  +    G     E + D     S  +R+  + S GKK +V D + IEARVL+ 
Sbjct: 348 D--LEEARKLFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFK 449
           +AGE W+ K F  G+DIY  + ++ F  P++K  +    R  GK+ ELA GY G     K
Sbjct: 406 LAGEKWRSKVFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALK 465

Query: 450 TM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            M A   GL  ++    V S                                        
Sbjct: 466 AMGALDMGLSEEELQPLVNS---------------------------------------- 485

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            WR  +  ++ LW D+       V+E    S   +    R  +      + I LPS R+L
Sbjct: 486 -WRQANPNIVLLWWDVDNAVKTAVKEQIPTSTHGIQFEVRSGI------LFITLPSGRKL 538

Query: 569 VY-------SDVKGD-CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y       +   G+  +Y  T T++   R  +YG K  ENIVQAISRDIL   +K   +
Sbjct: 539 AYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQLKE 598

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             + IV  VHDE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 599 --FKIVGHVHDEVIIECPMEQ--KIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 216/717 (30%), Positives = 327/717 (45%), Gaps = 111/717 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L ID+ET     L K GV++YAE     I L A + D+ PV ++D T+++ +P  +L
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKEN-LPDQIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109
           Q L +++++  A N+ FERI     L    P            W C+ V +   GLP SL
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLF 159
           +     L   E   K++EG  +I  FC       PY  T+ N         H    W  F
Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCL------PYKPTKINGGRKRNFPHHAPDKWAAF 173

Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
             Y KRDVE    +  +L   P+ D   + +  DQ IND G  ID+D V     +  + +
Sbjct: 174 INYNKRDVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESK 233

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKD 276
            K+ E++ +LT G+         L+M  +L   G+    + +  +K +L   +  +  K 
Sbjct: 234 SKIQEELKELT-GL---ENPNSVLQMIGWLREHGVTTNSLDKKAVKELLKVVD-AKTTKV 288

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR---- 332
           L L R  ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    
Sbjct: 289 LKL-RQQAAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLP 347

Query: 333 --QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             +E  +   T  ++A +      D L   S  +R+  + S+GKK +V D + IEARVL+
Sbjct: 348 DLKEARDLFKTGDLEATDLLYGTQDTL---SQLIRTAFVPSDGKKFIVCDFSAIEARVLS 404

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVF 448
            +AGE W+   F  G+DIY  + ++ F  P++K  +  + R  GK+ ELA GY G     
Sbjct: 405 HLAGEKWRSMVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGAL 464

Query: 449 KTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           K M A   GLD Q+    V S                                       
Sbjct: 465 KAMGAIDMGLDEQELQPLVDS--------------------------------------- 485

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             WR  +  ++  W D+ +          +I  ++      +  +  K  + I LPS R+
Sbjct: 486 --WRQANPNIVLFWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRK 537

Query: 568 LVYSDVK--------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           L Y   K           +Y  T T++   R  +YG K  ENI+QAISRDIL   MK   
Sbjct: 538 LAYVKPKMGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLK 597

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              + IV  VHDEI+ E   +   ++  + +LM K P W   + L+A+GYE   Y+K
Sbjct: 598 D--FRIVGHVHDEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 213/711 (29%), Positives = 325/711 (45%), Gaps = 99/711 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L ID+ET     L K GV++YAE     I L A + D+ PV ++D T+++ +P  +L
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKEN-LPDQIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109
           Q L +++++  A N+ FERI     L    P            W C+ V +   GLP SL
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ----AWQLFGEYCKR 165
           +     L   E   K++EG  +I  FC     +      + N        W  F  Y KR
Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  +L   P+ D   + +  DQ INDRG  ID+D V     +  + + K+ E+
Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           + +LT G+         L+M  +L   G+    + +  +K +L   +  +  K L L R 
Sbjct: 240 LKELT-GL---ENPNSVLQMIGWLREHGVTTNSLDKKAVKELLKVVD-AKTTKVLKL-RQ 293

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR------QERS 336
            ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+      +E  
Sbjct: 294 QAAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEAR 353

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           +   T  ++A +      D L   S  +R+  + S+GKK +V D + IEARVL+ +AGE 
Sbjct: 354 DLFKTGDLEATDLLYGTQDTL---SQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEK 410

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTM-AS 453
           W+   F  G+DIY  + ++ F  P++K  +  + R  GK+ ELA GY G     K M A 
Sbjct: 411 WRSMVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAI 470

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             GLD Q+    V S                                         WR  
Sbjct: 471 DMGLDEQELQPLVDS-----------------------------------------WRQA 489

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  ++  W D+ +          +I  ++      +  +  K  + I LPS R+L Y   
Sbjct: 490 NPNIVLFWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRKLAYVKP 543

Query: 574 K--------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           K           +Y  T T++   R  +YG K  ENI+QAISRDIL   MK      + I
Sbjct: 544 KMGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRI 601

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDEI+ E   +   ++  + +LM K P W   + L+A+GYE   Y+K
Sbjct: 602 VGHVHDEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 210/716 (29%), Positives = 321/716 (44%), Gaps = 109/716 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     + L A + D+ PV ++D  ++  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDFNKEK-LPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109
           + L ++ V+  A N+ FERI     L    P            W C+ + +   GLP SL
Sbjct: 62  EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFG 160
           +     L   +   KM EG  LI  FC          G I + P+          W  F 
Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAP-----NKWSTFI 174

Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           +Y +RDVE    + +R+   P+     + +  DQ INDRG  ID+D V    ++  + + 
Sbjct: 175 DYNRRDVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKA 234

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+  ++  LT G+    +    L+M  +L   G+    + +  +K +L    + +    +
Sbjct: 235 KIQAELKTLT-GL---EKPNSVLQMISWLREHGVATDSLDKKAVKELLK--TVDETTAQV 288

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR----- 332
           +  R  ++ S++ K   +   V  DGR RG  QF+GA+RTGRW+G + Q QNLP+     
Sbjct: 289 LKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPD 348

Query: 333 -QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +E  E   T  +++    E + D     S  +R+  + S GKK +V D + IEARVL+ 
Sbjct: 349 LKEARELFRTGDLEST---ELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFK 449
           +AGE W+ K F  G+DIY  + ++ F  P++K  +  E R  GK+ ELA GY G     K
Sbjct: 406 LAGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALK 465

Query: 450 TMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            M +   GL  ++    V S                                        
Sbjct: 466 AMGALDMGLSEEELQPLVNS---------------------------------------- 485

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            WR  +  ++  W D+       V+E    S + +              + I LPS R+L
Sbjct: 486 -WRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQ------FEVKSGILFITLPSGRKL 538

Query: 569 VY-------SDVKGD-CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y       +   G+  +Y  T T++   R  +YG K  ENIVQAISRDIL   MK    
Sbjct: 539 AYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL-- 596

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           N + IV  VHDE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 597 NDFKIVGHVHDEVIIECPIEQ--KLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 222/728 (30%), Positives = 325/728 (44%), Gaps = 120/728 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  YA D   V++ D      +P D+L
Sbjct: 1   MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL-----GIDI-----PSKR----------WICTSV 98
             L DE+V   A N+ FER+   + L      +D      P  R          W C+ +
Sbjct: 61  DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA--- 155
            +   GLP SL+ A   L       KM+EGK LI  FC       P   T+ N  +    
Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQ--KMKEGKDLIRYFCV------PCKETKLNGGRTRNL 172

Query: 156 -------WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                  W LF  Y KRDVE    + +RL   P+ +   D + LDQ INDRG  ID  L 
Sbjct: 173 PRHAPDKWTLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLA 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSIL 265
                + A+ R  L    + +  G          ++M  +L   G+    + +  ++ +L
Sbjct: 233 ENAIVIDARSRDSL----MAVLKGKTGLENPNSVIQMIGWLEQHGMKTDSLGKKQVQELL 288

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
             +   +  + ++L R   + S++ K   +      D R RG  QFYGA+RTGR++G   
Sbjct: 289 KTAE--EPLRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHI 346

Query: 326 QPQNLPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVV 378
           Q QNLP+       E  E +     +AL    ++I D L   S  +R+  +   G K VV
Sbjct: 347 QLQNLPQNHLPDLAEARELVRQGNYEALELLYDSIPDVL---SQLIRTAFVPRKGMKFVV 403

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVME 436
           +D + IEARVL+W+AGE W++  FA   DIY  + +  F  P++K  V+   R  GK+ E
Sbjct: 404 SDFSAIEARVLSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAE 463

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY G     K M +   LD+   ++N                     + YP      
Sbjct: 464 LALGYGGSTGALKAMGA---LDM-GLTEN---------------------ELYP------ 492

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                    + ++WR+ +  ++  W  +       ++E   + A  +  + +  M     
Sbjct: 493 ---------LVQSWRSANPHIVDFWWQVDATVKTAIKEQIPMRAGCIRFLCQSGM----- 538

Query: 557 DVHIVLPSSRRLVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENIVQAISR 607
            + I LPS RRL Y   + G+  +           AT +  R  +YG K  ENIVQ ISR
Sbjct: 539 -LFIQLPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISR 597

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667
           DILC  M+  T     IV  VHDE++ E       SV  +C  M + P WA+GL L+A+G
Sbjct: 598 DILCYAMQ--TLRCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADG 653

Query: 668 YEAKRYRK 675
           YE + Y+K
Sbjct: 654 YECEFYQK 661


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 201/720 (27%), Positives = 327/720 (45%), Gaps = 116/720 (16%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           IDIET S   L K GV+ Y  ++   I L  Y+ D   V + D  +   +P +++  L D
Sbjct: 9   IDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEIIMALTD 68

Query: 64  ETVMCVAHNSLFERILF---------KKTLGIDIPS---------KRWICTSVLARTNGL 105
           E +   A N+ FER+           KK +   IP            W C+ V +   GL
Sbjct: 69  ENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWSAYMGL 128

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQA 155
           P  L  A   L   E   K+ EGK LI  FC       P   T+ N           +  
Sbjct: 129 PLLLAGAGAVLGLEEQ--KLTEGKELIRYFCV------PCKPTKVNGGRTRNLPQHDMIK 180

Query: 156 WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W++F +Y KRDVE    +  +L   P+ +   + + LDQ INDRG  +D+D+V       
Sbjct: 181 WEMFKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFD 240

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + +  L + + ++T   + +      ++ +L    G+++  + +  + ++L+ +   + 
Sbjct: 241 EKSKAVLADKMQEMTG--LENPNSVQQMKQWLS-CNGLEMDSLGKKEVAAVLNTA--PEP 295

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            K ++  R   + S++ K   ++ AV SDGR RG   FYGA+R+GRW+G + Q QNLP+ 
Sbjct: 296 LKTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQN 355

Query: 334 -----ERSEEILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
                E +  ++ Q   +A+N   + + D L   S  +R+  +   G + +V+D + IEA
Sbjct: 356 HMSDLEEARSLVKQGNYEAMNMLYDDVPDTL---SQLIRTAFVPRKGMEFIVSDFSAIEA 412

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGG 444
           RVL+ +AGE W+   FA+G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G 
Sbjct: 413 RVLSHLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGS 472

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               K+M +   LD+      +K                                     
Sbjct: 473 VGALKSMGA---LDMGLEEDELKP------------------------------------ 493

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +   WR  +  +++LW D+       V++      R  +++  +        + I LPS
Sbjct: 494 -LVDMWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPS 546

Query: 565 SRRLVYSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
            R L Y   K   +   +          T +  R  +YG K  ENIVQAISRDIL   ++
Sbjct: 547 GRCLSYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIR 606

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             T +   I   VHDE++ E   +   S+  +C  M + P W +G+ L+A+GYE + Y+K
Sbjct: 607 --TLSHCFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662


>gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 631

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 205/679 (30%), Positives = 304/679 (44%), Gaps = 106/679 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L       K + GK LI  F      S P   T+ N           ++ WQ F +YC
Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L 
Sbjct: 173 IRDVEVEMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +    +T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  R
Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIR 288

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L 
Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346

Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           +  + L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW A
Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451
            E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M
Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466

Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +   G++  +    V S                                         W
Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  +  ++  WK      AC      ++ +R+  +   L     K  + I LPS R L Y
Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539

Query: 571 SD-VKGDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
              + G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +    
Sbjct: 540 PKALVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596

Query: 619 KNGYDIVLTVHDEIVSETP 637
             G+ IV  VHDE++ E P
Sbjct: 597 ALGFKIVGHVHDEVIVEIP 615


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 212/730 (29%), Positives = 320/730 (43%), Gaps = 126/730 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L ID+ET S   + K G + YAE     I L   + D+ PV ++D      +P+++L
Sbjct: 2   MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS------------------KRWICTSVLA 100
             L DE ++  A N+ FER+     L    P                     W CT + +
Sbjct: 62  AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN--------- 151
              GLP SL+     L   +   KM+EGK LI  FC       P   T+ N         
Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQ--KMKEGKDLIKYFCS------PCKPTKVNGGRTRNLPE 173

Query: 152 HV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           H    W+ F  Y +RDVE    + +RL   P+ D     + +DQ IND G  +D+D+V  
Sbjct: 174 HAPDKWETFKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVV-- 231

Query: 209 LQELIA-QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILS 266
            +  IA  ER K    ++     I         ++M  +L   G++   + +  +  ++ 
Sbjct: 232 -ENAIAFDERSK--SALITAMKNITNLDNPNSVVQMKQWLSDNGVETESLGKKEVAGLIK 288

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            ++   ++K L L RL  + S++ K   +  AV  DGR  G  QFYGA+R+GRW+G + Q
Sbjct: 289 ETD-GDISKALKL-RLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQ 346

Query: 327 PQNLPRQERSEEILTQTIQALNRGE---------TIADPLGLASDCVRSCIIASNGKKLV 377
            QNLP+   S+  LT+  + +  G+          I D L   S  +R+  IA  G K +
Sbjct: 347 LQNLPQNHMSD--LTEARELVRTGDYDTLDMLYDDIPDTL---SQLIRTAFIARPGYKFI 401

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVM 435
           V+D + IEARVLA +AGE W+ K FA G+DIY  + ++ F  P+ K  ++   R  GK+ 
Sbjct: 402 VSDYSAIEARVLAHLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIA 461

Query: 436 ELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           ELALGY G     K+M +   GL  ++    V S                          
Sbjct: 462 ELALGYGGSVGALKSMGALEMGLTEEELQPLVDS-------------------------- 495

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
                          WR+ +  +   W ++       ++         +    +  M   
Sbjct: 496 ---------------WRSSNPMITAFWWNVDNAIKTAIKMHIPTEVNGIHFCYKSGMLLI 540

Query: 555 KRDVHIVLPSSRRLVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENIVQAI 605
           KR      PS R L Y   K G+  +           +T +  R  +YG K  ENIVQA+
Sbjct: 541 KR------PSGRVLSYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAV 594

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665
           SRDILC  MK  T     IV  VHDE++ E   +    +  +C  M ++  W  G+ L+A
Sbjct: 595 SRDILCNAMK--TLRHCFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRA 650

Query: 666 EGYEAKRYRK 675
           +GYE   Y+K
Sbjct: 651 DGYETNFYKK 660


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 205/361 (56%), Gaps = 9/361 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A S +    ++   + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 G 536
           G
Sbjct: 362 G 362


>gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1]
          Length = 645

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 191/665 (28%), Positives = 297/665 (44%), Gaps = 84/665 (12%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           +P +L + L D  V   A N+ FER++ ++ LGI  P K W CT  LA   G    L   
Sbjct: 22  LPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAWRCTMALAYMLGFAGDLLAV 81

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGS--IDSPPYDC-TRANHVQAWQLFGEYCKRDVEA 169
              +   E   K  EGK LI  F K        P++    A   + W  F +Y  RDVE 
Sbjct: 82  GTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEATDPEDWWHFCKYNIRDVET 141

Query: 170 TRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  RL+  P+ D E D++ LDQ IND G  ID +       L    + ++ E++  +
Sbjct: 142 ELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYSALALAEARKPQIIEEMADI 201

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN---ITQLAKDLILNRLAS 284
           T   + +      L  +L    G    D+   T+  ++  ++   +   A  ++  RL S
Sbjct: 202 TG--LNNPNSPAQLTPWL-KERGYPFSDLRSDTVNKVIREADENGVDPEAIRVLQMRLNS 258

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT--- 341
           + +++ K  T+ +A   DGR R +LQF GASRT RW+G   Q QNLPR  +  E +T   
Sbjct: 259 AKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRIQTQNLPRTPKLIEDVTDLS 318

Query: 342 --------QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                   + + AL     + +P+     C+RS  I + G K +VADL+ IE+ V+ W+ 
Sbjct: 319 IVNKMIHQRDLDALTL--YVGEPMDALVGCIRSAFIPTPGHKFIVADLSSIESVVIGWLT 376

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
              W +   A   D+Y +  A   + P ++ +K  R+  K   L  GY+ G         
Sbjct: 377 DCKWFMNTLAAKHDLYRSFAAHWLHLPYEE-TKPHRSKAKPATLGAGYRLGGGHMDENGK 435

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             GL                 W  AE+  + M  +  E +V             +A+R  
Sbjct: 436 KTGL-----------------WGYAENMGVHMTQKEAEESV-------------QAFRDL 465

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY--- 570
              +++ W DL      V++       R+      L++   K  + I LPS R++ Y   
Sbjct: 466 CPEIVRAWYDLENAVFKVIR------TRQAVVWGCLIIEYTKPFLTIRLPSGRKMYYFRP 519

Query: 571 -----------------SDVKGDCSY---LNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                               K +  Y   +  + ++  +  ++GGKL ENIVQA++RD+L
Sbjct: 520 RLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSHGGKLVENIVQALARDVL 579

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
            EG+K A + G+ IV+ +HDEIV+E P+    +V  L S M     WA+GLPL A G+E 
Sbjct: 580 AEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAAELPWAEGLPLGAAGWEG 639

Query: 671 KRYRK 675
             YRK
Sbjct: 640 YFYRK 644


>gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3]
 gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3]
 gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5]
 gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12]
          Length = 1032

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 237/453 (52%), Gaps = 25/453 (5%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N L F+R++ K   G ++  +  I T ++A  + LP SL + 
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169
           C  LN    + K + GKALI RF K +  +  Y   R   A H + W  F  Y K D+ +
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTAATHPKEWAEFIAYAKSDITS 178

Query: 170 TRELFKRLIPLSDGE---RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            RE++K++    + E   R LWL DQ INDRG+++D+ L     E + + +++L E+  +
Sbjct: 179 MREVYKKMPKWGNSEFEDRVLWL-DQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              G +        L +   L     + +  + TL  +L+  ++   A+ +I  RL ++ 
Sbjct: 238 KYGGSLTGKD---FLPILQELAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAAS 294

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +A  K   L    SSD R RG LQ+ GA RT RW+G  FQPQNL R    ++ L + I A
Sbjct: 295 TASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAA 354

Query: 347 LNRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
           L +G      D   L +  VRSCII   G+K VVAD + +E R LAW+AGE+  +  F  
Sbjct: 355 LLKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRA 414

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKV 434
           G DIY  T  K F    D + KE+   R IGK 
Sbjct: 415 GLDIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 130/286 (45%), Gaps = 47/286 (16%)

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------- 485
            EL LGY+GG   F T A + GLDL + ++ +  T     W      + W           
Sbjct: 748  ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 807

Query: 486  ---QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-----S 537
               +D  P + + DK +   C+ +K+ WR  H   +  W+DL +G    V+  G      
Sbjct: 808  PGEKDDRPSY-ILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 866

Query: 538  ISARRVANVPRLVMRRHKRD----------VHIVLPSSRRLVYSDV-------KGDCSYL 580
               RR       + R  + D          + + LPS R L Y  +         +   +
Sbjct: 867  AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 926

Query: 581  NT-------ATSQLMRE----RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
            NT         +QL R+     T+GGK  ENIVQA+ RD+L   M N    GY IVL+VH
Sbjct: 927  NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 986

Query: 630  DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            DE+V ETPDTP ++V  L  LM   P WA G PL AEG E KRY K
Sbjct: 987  DELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 203/361 (56%), Gaps = 9/361 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A S +    +    + + +K+    C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 G 536
           G
Sbjct: 362 G 362


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 9/361 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 G 536
           G
Sbjct: 362 G 362


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score =  239 bits (611), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 150/393 (38%), Positives = 215/393 (54%), Gaps = 19/393 (4%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+L     +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L
Sbjct: 2   KRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLREL 61

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +  RL S  ++  K   L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR     
Sbjct: 62  LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 121

Query: 338 EILTQTIQALNRG--ETIADP-LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
             +   I+AL  G  E I D  + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AG
Sbjct: 122 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 181

Query: 395 EDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           E+WK+KAF+      G+D+Y   YA+AFN   + V+K+QR IGKVMEL LGY GG   F 
Sbjct: 182 ENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFL 241

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           T A   GLDL + ++            +A S +    +    + + +K+    C+ +K+ 
Sbjct: 242 TFALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRM 300

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  H   +  W D+ +     +Q  G     R     +L +RR K  + I LPS R L 
Sbjct: 301 WRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLC 355

Query: 570 YSDVK---GDCSYL--NTATSQLMRERTYGGKL 597
           Y   +   G  +Y+  N  + +  R +TYGGKL
Sbjct: 356 YPSARIENGQITYMGTNPYSRKWERLKTYGGKL 388



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 51/77 (66%)

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  WA
Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHWA 755

Query: 659 KGLPLKAEGYEAKRYRK 675
             LPL A G+E  RYRK
Sbjct: 756 WDLPLSANGFETYRYRK 772


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 180/599 (30%), Positives = 277/599 (46%), Gaps = 89/599 (14%)

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV- 153
           GLP+SL     AL  ++   K  EGKALI  FC       P   T+AN         H  
Sbjct: 8   GLPASLDMMSKALRLAQE--KDNEGKALIRYFCM------PCKPTKANGGRTRNYPEHAS 59

Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           + W  F EYC++DV   R + K++   P  + E+  W LDQ I D+G RID+DLV     
Sbjct: 60  EKWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVK--HA 117

Query: 212 LIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           +  QER +    + K   G+  + +      L+ +L  + G  +  +++ ++  +L+  +
Sbjct: 118 IACQERYQ--ASLSKKAKGLTGLENPNSVQQLKDWLADM-GYPVSSLNKDSVSELLADED 174

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           + +  ++++L R   S ++I K   +  A   DGR+RG LQF GA+RTGRW+G + Q QN
Sbjct: 175 LDEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQN 234

Query: 330 LPRQERSEEILTQTIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAG 383
           LPR    +  + +  + L  G+  A  +       + S  +R+  IA +G    + D + 
Sbjct: 235 LPRNYIKD--IAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSA 292

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IEARV+AW+AGE W++  F +   IY  + ++ F+ PI++V K  R  GKV ELALGY G
Sbjct: 293 IEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNG 352

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           G      M                                         A++  L     
Sbjct: 353 GVNALIAMG----------------------------------------ALEMGLKENEL 372

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           + +  AWR     +  LW+ + +          +IS R+      L        + I LP
Sbjct: 373 QGIVDAWRKASPAITSLWRGVEKHAKL------AISTRKSQKYKGLTFYYEAGILFIKLP 426

Query: 564 SSRRLVYSDVK-------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           S R L Y   K           Y         ++ TYGGKL ENIVQAI+RD L   ++ 
Sbjct: 427 SGRNLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRR 486

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               G D V+ VHDE ++E  ++   SV  L +++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 487 IEDTGIDTVMHVHDEAITEVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 202/361 (55%), Gaps = 9/361 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 G 536
           G
Sbjct: 362 G 362


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/385 (38%), Positives = 211/385 (54%), Gaps = 19/385 (4%)

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S 
Sbjct: 10  QLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSC 69

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            ++  K   L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+
Sbjct: 70  TTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIE 129

Query: 346 ALNRG--ETIADP-LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
           AL  G  E I D  + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF
Sbjct: 130 ALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAF 189

Query: 403 A-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +      G+D+Y   YA+AFN   + V+KEQR IGKVMEL LGY GG   F T A   GL
Sbjct: 190 SEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGL 249

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           DL + ++            +A   +    +    + + +K+  T C+ +K+ WR  H   
Sbjct: 250 DLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQT 308

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574
           +  W D+ +     +Q  G     R     +L +RR K  + I LPS R L Y   +   
Sbjct: 309 VSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARIEN 363

Query: 575 GDCSYL--NTATSQLMRERTYGGKL 597
           G  +Y+  N  + +  R +TYGGKL
Sbjct: 364 GQITYMGTNPYSRKWERLKTYGGKL 388



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 51/77 (66%)

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  WA
Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 755

Query: 659 KGLPLKAEGYEAKRYRK 675
             LPL A G+E  RYRK
Sbjct: 756 WDLPLSANGFETYRYRK 772


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 176/575 (30%), Positives = 270/575 (46%), Gaps = 84/575 (14%)

Query: 128 GKALIARFCK----------GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           GK LI +FC           G+ + P  D T      +W  F +Y +RDVE    +  RL
Sbjct: 20  GKRLIKQFCTPATPSVLNGGGTRNLPSSDPT------SWAQFIDYNQRDVEVELAIHDRL 73

Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
              P+ + E D + LDQ IND G  +D  L      L  Q R        +LT   + + 
Sbjct: 74  SSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLARARELTG--LENP 131

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
                L+ +L    G ++  +++  +++ L  +  T   K+++  R   + S++ K   +
Sbjct: 132 NSPIQLKEWL-TTHGCEMSSLAKADVEAALESA--TGKVKEVLELRGDLAKSSVKKYQAM 188

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI---QALNRGET 352
                +DGR RG +QFYGA RTGR++G + Q QNLPR    +    +T+   + L+  E 
Sbjct: 189 HNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTLTRQRNLDALEL 248

Query: 353 IADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
           + D +    S  +R+  I S G + +VAD + IEARV+AW+AGE   + AF +G+D+Y  
Sbjct: 249 LYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETSTLAAFRDGKDLYCE 308

Query: 412 TYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           T ++ F  P++K  ++ E R  GK+  LA GY G     K M                  
Sbjct: 309 TASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG----------------- 351

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A++  L     + +  AWRA +  +++LW D+ +   
Sbjct: 352 -----------------------ALRMGLAEHELKPIVDAWRAANPNIVRLWADVEQAAL 388

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATS--- 585
                  +I+ R+   +  L        + I LPS RRL Y   + G+  +  T+ +   
Sbjct: 389 ------DAITTRQAVRLRNLRFTAESGILFITLPSGRRLAYVKPQLGENRWGGTSITYSG 442

Query: 586 -----QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                +  R  TYGGKL ENIVQA++RD+L   M    + G+ IV+ VHDEIV + P+  
Sbjct: 443 VTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVMHVHDEIVIDEPEDS 502

Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            F++   C LMT  P WA GLPL A+GYE   YRK
Sbjct: 503 GFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 9/361 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G  E I D  + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 G 536
           G
Sbjct: 362 G 362


>gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1]
 gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1]
          Length = 1062

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 233/471 (49%), Gaps = 42/471 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
             +LF+D ET S   L KVG +AYAE     I +C YA D+  V+ WD TE   MP +L 
Sbjct: 4   FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELR 63

Query: 59  QYLRD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + LR     +  + +A+  LF+R++ ++  GID+P  +   T ++A  + LP SL   C 
Sbjct: 64  KALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQ 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC---TRANHVQAWQLFGEYCKRDVEATR 171
            L       K + GKALI RFCK +  +  Y     TR  H + W  F  Y   D+ A R
Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKT--YKIRRYTRETHPEEWAKFLRYAALDIIAMR 181

Query: 172 ELFKRLIPLSD--GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E++ R+    +   E ++ L+DQ INDRG+ +D+DL     + +   +++L E+  +   
Sbjct: 182 EVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFG 241

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +  +     LR    +     + +  + TL  +L   +     K LI  RL +S +A 
Sbjct: 242 GKLTGNDFLPILRD---IAPAFTIHNAQKSTLNDLLEDPDFPDEGKALIEMRLGASSTAS 298

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE----------- 338
            K N L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R E S++           
Sbjct: 299 TKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGE 358

Query: 339 ----------ILTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
                     +LT  I +L RG      D   L +  VR CII + GKK VVAD + +E 
Sbjct: 359 SDVSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEG 418

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKV 434
           R LAW+AGE   +  F  G DIY  T  K F    D +    K+ R IGK 
Sbjct: 419 RGLAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKA 469



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 136/306 (44%), Gaps = 55/306 (17%)

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
             SK    +    EL LGY GG   F   A + GLDL   +  +K T     W  A+  + 
Sbjct: 758  ASKSGFLVAHNCELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYE 817

Query: 484  WM-------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
            +              +D+ P + +  K +   C+ +K+ WR  H   +  W +L +   C
Sbjct: 818  YARINEAKRPPKPGKKDERPTY-ILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLC 876

Query: 531  VVQEGGSI---------SARRVANVPRLVMRR-----HKRD--------VHIVLPSSRRL 568
             ++  G             R+   + R   +       +RD        + I LPS R +
Sbjct: 877  AIRNPGKAYWAGANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIM 936

Query: 569  VY--------SDVKGDCSYLNTAT-------SQLMR----ERTYGGKLTENIVQAISRDI 609
             Y        +++  D     T+T       +Q  R    + TYGGKLTENIVQA+ RDI
Sbjct: 937  SYPGIALSVTTEIDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDI 996

Query: 610  LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYE 669
            L   M      GY+IVL+VHDE+++E PDT  ++   LC+LM   P WAKG PL AEG  
Sbjct: 997  LAWSMPGVEAAGYEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDC 1056

Query: 670  AKRYRK 675
              RYRK
Sbjct: 1057 MYRYRK 1062


>gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e]
 gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e]
          Length = 461

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 233/452 (51%), Gaps = 23/452 (5%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N L F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---HVQAWQLFGEYCKRDVEA 169
           C  LN    + K + GKALI RF K +  +  Y   R     H + W  F  Y K D+ +
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTADTHPKEWAEFIAYAKSDITS 178

Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            RE++K++    + E +  +  LDQ INDRG+++D+ L     E + + +++L E+  + 
Sbjct: 179 MREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRK 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G +        L +   L     + +  + TL  +L+  ++   A+ +I  RL ++ +
Sbjct: 239 YGGSLTGKD---FLPILQELAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAAST 295

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           A  K   L    SSD R RG LQ+ GA RT RW+G  FQPQNL R    ++ L + I AL
Sbjct: 296 ASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAAL 355

Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            +G      D   L +  VRSCII   G+K VVAD + +E R LAW+AGE+  +  F  G
Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKV 434
            DIY  T  K F    D + KE+   R IGK 
Sbjct: 416 LDIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 195/624 (31%), Positives = 292/624 (46%), Gaps = 96/624 (15%)

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           K+ G+ +    W CT + + T GLP SL++    L   +   K+ EGK LI  FC     
Sbjct: 2   KSEGLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQ--KLTEGKNLIKYFCL---- 55

Query: 142 SPPYDCTRAN----------HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWL 189
             P + T+ N            + W+LF  Y KRDVE    + ++L   P+ D     + 
Sbjct: 56  --PCNPTKVNGGRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFY 113

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           LDQTINDRG  ID   V    +L  + +  L  ++  +T   + +      +R +L    
Sbjct: 114 LDQTINDRGIEIDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWL-KEH 170

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
           G+++  + +  +   L      +LA+ L L R   + S++ K   +  A   D R RG  
Sbjct: 171 GLEMESLGKKEVAKELKTVG-KELAEVLRL-RQQLAKSSVKKYTAMKNAACMDYRERGMF 228

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQE-----RSEEILTQ-TIQALNR-GETIADPLGLASD 362
           +FYGA+RTGR++G + Q QNLP+        +  ++ Q  ++AL    E I D L   S 
Sbjct: 229 RFYGANRTGRFAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL---SQ 285

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R+  I   G K +VAD + IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++
Sbjct: 286 LIRTAFIPRTGFKFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVE 345

Query: 423 K--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           K  V+   R  GK+ ELALGY G     K M +   LD+    + ++             
Sbjct: 346 KHGVNGHLRQKGKIAELALGYGGSVGALKAMGA---LDMGLTEEELQP------------ 390

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                                    +  AWR  +  V  LW D+       V E  S+  
Sbjct: 391 -------------------------LVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISV-- 423

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------CSYLNT-ATSQLMRER 591
            R  N+   V       + I LPS R L Y   + +         +Y    +T +  R  
Sbjct: 424 -RTHNI---VFTYKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLE 479

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           +YG K  ENI QAI+RDIL   M+  T   Y IV  VHDE + ET      SV ++C LM
Sbjct: 480 SYGPKFVENITQAIARDILLYAMQ--TLKEYRIVAHVHDEAIIETDKN--VSVQSVCELM 535

Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675
            + P WA+GL L+A+GYE + Y+K
Sbjct: 536 GRTPPWAEGLVLRADGYECEFYKK 559


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/378 (37%), Positives = 204/378 (53%), Gaps = 8/378 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  R  +S ++  K   L + V
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364

Query: 357 LGLASDCVRSCIIASNGK 374
           + L S  +R CIIA  GK
Sbjct: 365 MELTSSALRGCIIAPTGK 382


>gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 328

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 180/333 (54%), Gaps = 16/333 (4%)

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGED 407
           +A  + LAS  +R CI+A  GKKLVV+DL+ IE R+LAW+AGE WK+ AF       G D
Sbjct: 1   MASVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPD 60

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +Y   YA+AFN   + V+K QR IGKVMEL LG+ GG   F T A   GLDL++ +    
Sbjct: 61  LYKLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAAL 120

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                +   +A+  +     +   + + +++   AC+ +K+ WR  H      W  L   
Sbjct: 121 PNIPRDVQREAKGWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPETCDFWYQLERT 179

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NT 582
               +      +  +      L +RR    + I LPS R L Y      KG+ +Y+  N+
Sbjct: 180 VRTAIA-----TPAKTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINS 234

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            + +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE++ E PDT  +
Sbjct: 235 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDY 294

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   L SL++ NP WA  +PL A G+EA  YRK
Sbjct: 295 TDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 237/466 (50%), Gaps = 43/466 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + G + YA+     + L  YA D  PVK+ D T+   +PS ++
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                K+  GK L+  FC           T+AN  +           WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCTSC------KPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
              E+ ++    P+   E + + +DQ INDRG RID  LV   +K Q+    +  +  + 
Sbjct: 173 VEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQ 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L    G++   +++ ++  +L  +  T + + L L +L 
Sbjct: 233 LTGLAN-----PNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT-VHQVLALRQLL 285

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S  S++ K   + +A+  DG + G LQFYGA+RTGRW+G + Q QNLPR    +  L + 
Sbjct: 286 SK-SSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEA 342

Query: 344 IQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
              + +G T A  +       + S  +R+  I S G    VAD + +EARV+AW++GE+W
Sbjct: 343 RALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEW 402

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGY 441
           +  AFA  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY
Sbjct: 403 RQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 153/467 (32%), Positives = 242/467 (51%), Gaps = 45/467 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN  +           WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
              E+ ++L   P+   E + + +DQ INDRG RID  LV   +K Q +   +  +  ++
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L    GI    +S+ ++  +L  +  T + + L L +L 
Sbjct: 233 LTGLAN-----PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT-VHQVLALRQLL 285

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338
           S  S++ K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR      E + E
Sbjct: 286 SK-SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344

Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++ Q  + AL    +++ D L   S  +R+  I S      VAD + +EARV+AW++ E 
Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGY 441
           W+ ++FA  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY
Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 213/419 (50%), Gaps = 15/419 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +  
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++ RL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+++  RL +S ++  K   L + V
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKEMLAIRLQASTTSTSKYKALMKGV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+A N        L +
Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQI 364

Query: 360 ASDCVRSCIIAS----NGKKLVVADLAGIEARVLAWIAGEDWK------IKAFANGEDI 408
           AS  V +    S    +  KL   D    EA     +    WK      +KAF  G  +
Sbjct: 365 ASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 423


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/349 (37%), Positives = 195/349 (55%), Gaps = 5/349 (1%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A  DEPV +WD T    +PS L + + D
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +  P +RW  T V A  + LP +L   C  L   +  
Sbjct: 65  PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
            K +EGK+LI  FCK    +S     T   H   WQ F  Y   D+EA RE++KRL    
Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG+ +D+DLV      + + +K+L E  V++T+G ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           A+  ++    G++L DM + T++  ++  ++    K+L+  RL +S ++  K  TL ++V
Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIADPDLPPAVKELLHIRLQASATSTSKYKTLLKSV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           SSDGRLRGTLQF GASRTGRW+G +FQPQNL R+  S E +   I+ + 
Sbjct: 305 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMK 353


>gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 422

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 154/421 (36%), Positives = 205/421 (48%), Gaps = 60/421 (14%)

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETIADPLGLA 360
           R R  +  Y    TGRW+G +FQP NLPR   S+ ++   I A+  G       D + L 
Sbjct: 12  RCRFPISLY----TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALT 67

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN---------------- 404
           S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF +                
Sbjct: 68  SSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEA 127

Query: 405 ------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
                                   G+DIY   YA +F      V+KEQR IGKV ELALG
Sbjct: 128 ITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALG 187

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y GG   F   A+   +DL+  ++           E  E+      +Q P F + D+   
Sbjct: 188 YGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFGLSDRAW- 245

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
            AC++ K+AWR  H  +   W+ L   FA     G   +A     +    ++  +  + +
Sbjct: 246 LACDVFKRAWRNAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGI---TVQYSRAWLRL 300

Query: 561 VLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGM 614
            LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M
Sbjct: 301 RLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACM 360

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                 GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLPL AEG++  RYR
Sbjct: 361 PAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYR 420

Query: 675 K 675
           K
Sbjct: 421 K 421


>gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 422

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 154/421 (36%), Positives = 204/421 (48%), Gaps = 60/421 (14%)

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETIADPLGLA 360
           R R  +  Y    TGRW+G +FQP NLPR   S+ ++   I A+  G       D + L 
Sbjct: 12  RCRFPISLY----TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALT 67

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN---------------- 404
           S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF +                
Sbjct: 68  SSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEA 127

Query: 405 ------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
                                   G+DIY   YA +F      V+K+QR IGKV ELALG
Sbjct: 128 ITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALG 187

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y GG   F   A+   +DL+  ++           E  E+      +Q P F + D+   
Sbjct: 188 YGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFGLSDR-AW 245

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
            AC++ K+AWR  H  +   WK L   FA         +A     +    M+  +  + +
Sbjct: 246 LACDVFKRAWRNAHPAIAAFWKALQ--FAATDAIRHPETAHTCCGI---TMQYSRAWLRM 300

Query: 561 VLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
            LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M
Sbjct: 301 HLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACM 360

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                 GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLPL AEG++  RYR
Sbjct: 361 PAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYR 420

Query: 675 K 675
           K
Sbjct: 421 K 421


>gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 377

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 170/329 (51%), Gaps = 45/329 (13%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F +Y +RDV A R++ KRL     +  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + ++ L E    LT G+++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+E +T  I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAFA----------------------------------------NGEDIYV 410
           W+AGE  K+ AF                                          G+DIY 
Sbjct: 243 WLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
             YA +F      V+K+QR IGKV ELAL
Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELAL 331


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 195/733 (26%), Positives = 314/733 (42%), Gaps = 110/733 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           +D E+RS + LP  G+  Y+  E   I + +++++   V+ W+       P+++ + L D
Sbjct: 7   LDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWE-IRDGKFPAEVREALED 65

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+  A N+ FER++ ++ L I+ P K W CT   A       +L+     L   +   
Sbjct: 66  PNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQDKV 125

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQ---------AWQLFGEYCKRDVEATRELF 174
           K+  GK LI  F K      P   T+ N  +          W  F  Y ++DV A   + 
Sbjct: 126 KLATGKKLINLFSK------PQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAID 179

Query: 175 KRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           + L P    D E +L+ LDQ INDRG  +DLD       +  + + +L   +  +T   +
Sbjct: 180 EWLAPYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN----ITQLAKDLILNRLASSGSA 288
            +      L+ ++    G    D+ + T+K +L+       +T    +++  R+ S+ ++
Sbjct: 238 ENPNSPQQLKPWV-KARGYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTS 296

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE---------- 338
           + K       V    RLR  LQF GA RT RW+G   Q  NL R  ++ E          
Sbjct: 297 VGKYKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALC 356

Query: 339 ILTQTIQALNR---GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
            +T  I+A +    G  + +P+   + CVRS I A  G + V  DL+ IE  V+AW+A  
Sbjct: 357 TVTNAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADC 416

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +  F  G   Y     + +     +V+ + R + K   L  GY+ G           
Sbjct: 417 QPLLNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRT 476

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           GL                 W  AE+  + M  Q    +V             K +R  + 
Sbjct: 477 GL-----------------WGYAENMGIDMSRQEAHDSV-------------KMYREAYP 506

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            V QLWKDL    A +++   +I  + V  V  +        +  +LPS RR+ Y   + 
Sbjct: 507 EVPQLWKDLE---AAIIR---TIKTKAVTRVRYVSFEIVGEFLVAILPSGRRMYYHRPRI 560

Query: 576 D-----------------------------CSYL--NTATSQLMRERTYGGKLTENIVQA 604
           +                              SY+  N    + +R+ ++GGK+TEN+VQA
Sbjct: 561 EKKKFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQA 620

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVS--ETPDTPYFSVGTLCSLMTKNPSWAKGLP 662
           I+R+IL  G+ NA K G +IVL VHDEIV+  +  D     +  L   MT    W + +P
Sbjct: 621 IAREILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASK-GLHVLKECMTAKRKWYEEMP 679

Query: 663 LKAEGYEAKRYRK 675
           + A G+ A  YRK
Sbjct: 680 VGAAGWSAAFYRK 692


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 148/476 (31%), Positives = 231/476 (48%), Gaps = 45/476 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ Y+E     I L AY+ D  PV++ D      +P+++L
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L DETV+  A N+ FER+   + LG+D  +  + W CT V   T GLP SL      L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HVQA-WQLFGEYCKRD 166
             ++   K+ EGK LI  FC       P + T+ N         H    W  F  Y  RD
Sbjct: 121 GLNKQ--KLTEGKDLIRYFC------VPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRD 172

Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           VE    +  +L   P+ D     + LDQ INDRG  ID D V    +L    +  L++ +
Sbjct: 173 VEVEIAIQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQL 232

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +LT   + +      +R +L L  G++   + +  +  +L       L + L+L R   
Sbjct: 233 QELTG--LENPNSVLQMRGWL-LDHGLETESLGKKAVDELLEQPIDENLKQVLVL-RQQL 288

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + S++ K   +     SD R RG  QFYGA+RTGR++G     QNLP+   S+    +++
Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSL 348

Query: 345 QALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
              +  E +    G    + S+ +R+  +   G K +V+D + IEARV+AW++GE W+ +
Sbjct: 349 VKQSNFEMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQE 408

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV-------------SKEQRAIGKVMELALGYQG 443
            F NG DIY  + ++ F  P++K              SK +    +++ +A+G QG
Sbjct: 409 VFKNGGDIYCASASQMFGVPVEKHGVNGLTGRLEELDSKLKELESEIISMAIGGQG 464


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 159/487 (32%), Positives = 234/487 (48%), Gaps = 61/487 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ YAE     I L  YA D   V++ D  +   +P ++L
Sbjct: 1   MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98
             L D+TV   A N+ FER+   + L      +D               +    W C+ V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH------ 152
            +   GLP SL+     LN      KM+EG+ LI  FC       P   TR N       
Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCV------PCKETRTNGGRTRNL 172

Query: 153 ----VQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               +  W  F  Y KRDVE    + +RL   P+ +   + + LDQ INDRG  IDL+L 
Sbjct: 173 PQHALDKWNQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELA 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSIL 265
            +   + A+ R+ L   + + T G+         L+M  +L   G+    + +  +K +L
Sbjct: 233 KQAVAMDAKSRESLMAALKEKT-GL---ENPNSVLQMLGWLEDHGLKTDSLGKKQVKELL 288

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
             +   +  + ++  R   + S++ K   +  AV  DGR RG  QFYGA+RTGR +G   
Sbjct: 289 KTAQ--EPLRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHI 346

Query: 326 QPQNLPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVV 378
           Q QNLP+       E  E +     +AL+   ++I D L   S  +R+  +   G K VV
Sbjct: 347 QLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVL---SQLIRTAFVPRAGMKFVV 403

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVME 436
           +D + IEARV++W+AGE WK  AFA G+DIY +T ++ F  P+ K  V+ E R  GK+ E
Sbjct: 404 SDFSAIEARVISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAE 463

Query: 437 LALGYQG 443
           LA   +G
Sbjct: 464 LACIAEG 470



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 19/177 (10%)

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           ++WR+ +  ++  W  +       +++   +    +  V +  M      + I LPS R+
Sbjct: 804 QSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFVCQSGM------LFIELPSGRQ 857

Query: 568 LVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           L Y   + G+  +           AT +  R  +YG K  ENIVQ  +RDILC  M+  T
Sbjct: 858 LSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQGTARDILCYAMQ--T 915

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                IV  VHDE++ E   +   SV  +C  M++ P WA+GL L+A+GYE   Y+K
Sbjct: 916 LRCCAIVGHVHDELIIEC--SKEVSVDAICEQMSRTPPWAEGLVLRADGYECAFYQK 970


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 247/532 (46%), Gaps = 86/532 (16%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223
           +E T++L     P+   E + + +DQ INDRG RID  LV   +K Q +   +  +  ++
Sbjct: 1   MEITQKL--ECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 58

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  L +           L+ +L    G     +S+ ++  +L  +   ++ + L L +L 
Sbjct: 59  LTGLAN-----PNSPLQLKDWL-QQQGAKTDSLSKASVAQLL-QTTTGKVHQILALRQLL 111

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338
           S  S++ K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR      E + +
Sbjct: 112 SK-SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARK 170

Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           ++ Q  + AL    +++ D L   S  +R+  I S      VAD + +EARV+AW++ E+
Sbjct: 171 LVKQGNVTALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEE 227

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           W+ +AFA  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M + 
Sbjct: 228 WRQEAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGA- 286

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL--VKKAWRA 512
                                                     KL+ T  EL  + + WR 
Sbjct: 287 -----------------------------------------TKLVLTDDELPPLVQMWRN 305

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               ++Q W D+ +      +E       +  +  + + R     + + L S R L Y  
Sbjct: 306 ASPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPK 359

Query: 573 VKGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
            K   +   + +   M         R  TYG KL ENIVQA SRD+L E M+        
Sbjct: 360 PKIGTNRFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENT 419

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +V+ +HDE V + P     S+ T+  LMT+ P WA GL L A G+ +  Y+K
Sbjct: 420 VVMHIHDEAVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469


>gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage]
          Length = 234

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 8/218 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G  E I D  + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+AFN     V+K
Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            QR IGKVMEL LGY GG   F T A   GLDL + ++
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAE 218


>gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae]
 gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 141/218 (64%), Gaps = 8/218 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G  E I D  + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+AF    + V+K
Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            QR IGKVMEL LGY GG   F T A   GLDL + ++
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAE 218


>gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c]
 gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 108/252 (42%), Positives = 146/252 (57%), Gaps = 5/252 (1%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     +  E  LW LDQTINDRG  ID DLV      +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + ++ L +    LT G ++++ Q  AL  +L    G+ L DM + T+   +    + + 
Sbjct: 63  ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+E++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVLA 242

Query: 391 WIAGEDWKIKAF 402
           W+AGE  K+ AF
Sbjct: 243 WLAGETPKLHAF 254


>gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 8/218 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G  E I D  + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+AFN     V+K
Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            QR IGKVMEL LGY GG   F T A   GL+L + ++
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAE 218


>gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage]
          Length = 234

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 139/218 (63%), Gaps = 8/218 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G  E I D  + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+AF      V+K
Sbjct: 121 XGKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            QR IGKVMEL LGY GG   F T A   GLDL + ++
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAE 218


>gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 384

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 186/389 (47%), Gaps = 56/389 (14%)

Query: 336 SEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+
Sbjct: 2   SQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWL 61

Query: 393 AGEDWKIKAFAN----------------------------------------GEDIYVTT 412
           AGE  K+ AF +                                        G+DIY   
Sbjct: 62  AGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRA 121

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           YA +F      V+KEQR IGKV ELALGY GG   F   A+   +DL+  ++        
Sbjct: 122 YAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLL 181

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
              E  E+      +Q P F + D+    AC++ K+AWR  H  +   WK L   FA   
Sbjct: 182 LQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAATD 237

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQ 586
                 +A     +    M+  +  + + LPS R L Y+    D  G  SY+ T   T +
Sbjct: 238 AIRHPETAHTCCGI---TMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRK 294

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   
Sbjct: 295 WTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAH 354

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 355 LAALMATPPPWAQGLPLAAEGFQTHRYRK 383


>gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 220/415 (53%), Gaps = 43/415 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L K GV+AYA+     I L AY++DDE  K+ D  +   +  ++   L
Sbjct: 9   LAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKNAL 68

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  ++  A N+ FER    K +G+ +  + W+CT+V +    LP SL+     L  SE 
Sbjct: 69  SDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLSEQ 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEATR 171
             K++EGK LI  FC       P   T+ N         H  + W+ F  YC RDV+  +
Sbjct: 129 --KLKEGKDLIRYFC------VPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEK 180

Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV---- 225
            + ++L   P+ + E   + LDQ INDRG  +D +LV   ++ I  +   L +DIV    
Sbjct: 181 GIRQKLHKFPIPESEMAFYRLDQEINDRGVLVDRELV---EQSITCDL--LHKDIVTNRA 235

Query: 226 -KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++T   + +      L+ +L    G+++  +S+G +  ++  ++  ++ + L L RL  
Sbjct: 236 YEVTG--LENPNSVSQLKGWLSE-RGVEIDSLSKGAVAELIEDAD-GEVLEALKL-RLLM 290

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + +++ K   +  +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+   S+  L +++
Sbjct: 291 AKTSVKKYEAIERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSL 350

Query: 345 QALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
               + E +     + P  + S+ +R+  I   G + +VAD + IEARVLAW++G
Sbjct: 351 VRRGQFEELELFYESTP-NVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 171/333 (51%), Gaps = 13/333 (3%)

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDC 147
           P +RW  T V A  +GLP SL   C  L   +   K +EGKALI  FCK    +S     
Sbjct: 7   PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDL 205
           T   H + W+ F  Y   D+EA RE++ RL        E  LW  DQ INDRG  +D+ L
Sbjct: 67  TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                E + QE+K+L +   ++TDG ++++ Q  AL  ++    G++L DM   TL+  +
Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           ++ ++    K+L+  RL +S ++  K   L + VS DGRLRGTLQF GASRTGRW+G +F
Sbjct: 187 ANPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLF 246

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADL 381
           QPQNLPR    +E + + I+A N        L +AS  V +    S    +  KL   D 
Sbjct: 247 QPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 306

Query: 382 AGIEARVLAWIAGEDWK------IKAFANGEDI 408
              EA     +    WK      +KAF  G  +
Sbjct: 307 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339


>gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1]
 gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 516

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 202/446 (45%), Gaps = 84/446 (18%)

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
            +I   A+  +  R  ++ ++  KL  + +    DGR RG    YGA  TGRW+G + Q 
Sbjct: 117 GDIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG-TGRWAGRLIQL 175

Query: 328 QNLPRQERSEEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADL 381
           QNLPR    +  L   I  +  G+          PL + S  +R C+I + G   + +D 
Sbjct: 176 QNLPRGSVKKADLA--IPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDF 233

Query: 382 AGIEARVLAWIAGEDWKIKAF-----ANGEDIYVTTYAK-------AFNTPIDKVSKEQR 429
           + IE R+ AW+A E+WKI+AF       G D+Y+    K        +  P+++ S+E+ 
Sbjct: 234 SNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAHPLNENSQERT 293

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
             GKV ELALG+ GG   F++MA+  G+ +           T E+ +Q            
Sbjct: 294 PYGKVPELALGFGGGVGAFQSMAAIYGMKV-----------TDEEADQ------------ 330

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                           +K AWR  H  V+ LW+++ +     +   G + +     +  +
Sbjct: 331 ----------------IKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVSTAGGRIKYV 374

Query: 550 VMRRHKRDVHIVLPSSRRLVYSD------------------VKGDCSYL--NTATSQLMR 589
           V       + +VLPS R L Y+                   +K   +++  N+ T +  R
Sbjct: 375 VKGGF---LWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMSVNSITRKWER 431

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             TYGG L EN +QAI+RD+L   +      GY +V+ VHDE ++E       SV    S
Sbjct: 432 CTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG-VGSVDEFKS 490

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +M   P+WA GLP+ A G+   RYRK
Sbjct: 491 IMCDTPAWAAGLPVAAAGWRGSRYRK 516


>gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1]
 gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 524

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 85/464 (18%)

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
           G++   +++  ++ +L+  +I   A+  +  R  ++ ++  KL  + +    DGR RG  
Sbjct: 108 GVETEGVAKAAVRQMLA-GDIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLH 166

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET------IADPLGLASDC 363
             YGA  TGRW+G + Q QNLPR    +  L   I  +  G+          PL + S  
Sbjct: 167 LVYGAG-TGRWAGRLIQLQNLPRGVIKKADLA--IPLIIDGDIDLVSMLFGPPLDVISSN 223

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVTTYAKA-- 416
           +R C+I + G   + +D + IE R+ AW+A E+WKI+AF       G D+Y+    K   
Sbjct: 224 LRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILT 283

Query: 417 -----FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
                +  P+++ S E+   GKV ELALG+ GG   F++MA+  G+ +           T
Sbjct: 284 LLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAIYGMKV-----------T 332

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            E+ +Q                            +K AWR  H  V+ LW+++ +     
Sbjct: 333 DEEADQ----------------------------IKVAWREAHPRVVALWRNMEDAAFNA 364

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS------------------DV 573
           +   G + +     +  +V       + +VLPS R L Y+                   +
Sbjct: 365 ISNPGRVVSTAGGRIKYVVKGGF---LWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKL 421

Query: 574 KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           K   +++  N+ T +  R  TYGG L EN +QAI+RD+L   +      GY +V+ VHDE
Sbjct: 422 KDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDE 481

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            ++E       SV    S+M   P+WA GLP+ A G+   RYRK
Sbjct: 482 ALAEVRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 524


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 183/721 (25%), Positives = 300/721 (41%), Gaps = 151/721 (20%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW--------ICTSVLARTNGL 105
           P+DL+ ++ +   +  A N  FE  ++   L     S+ W         C    AR   L
Sbjct: 17  PTDLIDHIANGGPI-AAWNITFEFWIWNMVLA---KSEGWPWLQLEQCYCDMAKARRFSL 72

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG----- 160
           P SL  A  AL  +E   K ++GK LI + C+      P   T+A     W L+      
Sbjct: 73  PGSLDTAAKALRTAE---KDKKGKQLIGKLCR------PVSATKARPEPRWTLYTAPQDY 123

Query: 161 ----EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                YC +DV++   +   +  ++  ER+ WL DQ IN RG  +D++ +    +++ Q 
Sbjct: 124 ADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALDIVGQT 183

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            ++   ++  +T+G + S  +   L  +L  + G  + ++   T+   L   ++   A+ 
Sbjct: 184 TRRFTMELAAITNGAVGSVSEVAKLTDFLATV-GCRMHNLKSETVAETLERDDLNPTARR 242

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  R A +G+ + KL +L   +SSDGRLR    F+GA  TGRWS    Q QNL     S
Sbjct: 243 ILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNL----TS 297

Query: 337 EEILTQTIQALNR--GET----IADPLGLASDC--------------------------- 363
           +   ++T     R  G++    +    GL  +C                           
Sbjct: 298 KGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKHRN 357

Query: 364 ------------------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA+ GKK V  D + IEA VLA +A  +W+I+ F   
Sbjct: 358 LDLIIDIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTH 417

Query: 406 EDIYVTTYAKAFNTPIDKV--SKEQ--------RAIGKVMELALGYQGGAKVFKTMASHC 455
             IY  + +K    P +++   KE+        +++GKV ELA GY G    +K   +  
Sbjct: 418 GKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGAE- 476

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                           FED +  +   L  +D  PE              + + W  +++
Sbjct: 477 --------------EHFEDDDAMKKAILGWRDASPE--------------IVEFWGGQYR 508

Query: 516 GVLQLWKDLTEGFACVVQEGGSISA----RRVANVPRLVMRRHKRDVHIVLPSSR----- 566
                 K + E +     EG  I A     +   V  +        ++  LPS R     
Sbjct: 509 RDPYTRKWVREYYGL---EGAVIMAILNPGKCYAVGDITYAVFDDVLYCRLPSGRFLQYH 565

Query: 567 --RLVYSDVKGDCSY------LNTATSQ----LMRERTYGGKLTENIVQAISRDILCEGM 614
             +L+ SD      Y       NT + +     +R  TYGG+L EN+ QA + D+    M
Sbjct: 566 QPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQAYAM 625

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           K    NGY +V+  HDE+++E P   + SV  + +LMT    W +  P++A G+E  RY+
Sbjct: 626 KQCENNGYPVVMHTHDELIAEVPGD-FGSVEEMAALMTGREPWREWWPIRAAGWEDDRYQ 684

Query: 675 K 675
           K
Sbjct: 685 K 685


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 170/371 (45%), Gaps = 67/371 (18%)

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           S S++ K   + +   +D R  G LQFYGA+RTGRW+G + Q QNLPR    +    +++
Sbjct: 28  SRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLAQARSL 87

Query: 345 QALNRGET-------IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                GET       + D L   S  +R+  I S G + +VAD + IEARVLAW+AGE+ 
Sbjct: 88  VRDGNGETLEMLYSSVPDTL---SQLIRTAFIPSKGHRFIVADYSAIEARVLAWLAGEET 144

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            + AF NGED+Y  T +  F  P++K  V+ E R  GK+  LA GY G     K M    
Sbjct: 145 TLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG--- 201

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                                A+K  L     + +  AWRA + 
Sbjct: 202 -------------------------------------ALKMGLSEDELQPIVDAWRAANP 224

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            ++QLW D+       +  G      R   +  L   +    + I LPS RRL Y     
Sbjct: 225 NIVQLWHDVDNAATRAISTG------RPVTLGNLGFEKKSGMLFINLPSGRRLAYVKPGI 278

Query: 575 GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
           G   +  T+ +        +  +  TYGGKL ENIVQA +RD+L E +      G+ IV+
Sbjct: 279 GMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEAITRIENAGHRIVM 338

Query: 627 TVHDEIVSETP 637
            +HDE+V + P
Sbjct: 339 HIHDEVVIDEP 349


>gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 368

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 191/418 (45%), Gaps = 76/418 (18%)

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           RL  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L
Sbjct: 3   RLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL 61

Query: 341 TQTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            +  + L + +   D        P  L S  VR+   A  G +L V+D + IEARV+AW 
Sbjct: 62  -EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWY 120

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKT 450
           A E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K 
Sbjct: 121 AKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKA 180

Query: 451 MAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           M +   G++  +    V S                                         
Sbjct: 181 MGALEMGIEENELQGLVDS----------------------------------------- 199

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  +  ++  WK      AC      ++ +R+  +   L     K  + I LPS R L 
Sbjct: 200 WRNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALA 253

Query: 570 YSD-VKGDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           Y   + G+ S+           LN   S+L   +TYGGKL ENIVQA +RD+L   +   
Sbjct: 254 YPKALVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARL 310

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 311 EALGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 178/385 (46%), Gaps = 69/385 (17%)

Query: 311 FYGASRTGR-W----SGCVFQPQNLPRQERSEEILTQTIQALNRGETIA----DPLGLAS 361
           F+   R GR W    SG + Q QNL R    +  L +++      E++      P  + S
Sbjct: 616 FFLVRRNGRVWVTGNSGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLS 675

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R+  I   G + +V+D + IEARVLAW+AGEDW + AF NGEDIY +T ++ F  P+
Sbjct: 676 QLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPV 735

Query: 422 DK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
            K  V+ + R  GKV  LA GY G     K M                            
Sbjct: 736 VKHGVNGDLRQKGKVATLACGYGGSVGALKAMG--------------------------- 768

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                        A++  L     + +  +WR  +  ++ LW D+      VV+      
Sbjct: 769 -------------AIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVK------ 809

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---------SQLMRE 590
            R       LV+   K  + I LPS RRL Y   K   +     +         ++  + 
Sbjct: 810 TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKI 869

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            +YGGK  ENIVQAI+RDIL E M    K G++IV+ +HDE+V E+  +   S+  +  +
Sbjct: 870 ESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIESDSS---SIEEINEI 926

Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675
           M+  PSWA GL L A+G+E++ Y+K
Sbjct: 927 MSLVPSWAPGLILDADGFESEFYKK 951



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 172/331 (51%), Gaps = 21/331 (6%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M KL ID+ET S   L K GV+ YAE     I L AY+ DD  VK+ D +    +P ++L
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+++   A N+ FER+   + LG  +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   KM EGKALI  F   CK +  +        +H ++ W  F EY +RDVE   E+ 
Sbjct: 121 DKQ--KMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRID---LDLVLKLQELIAQERKKLDEDIVKLTD 229
           K+L   P+   E + + +DQ INDRG  ID   +D  +K  E++ +E     +  ++LT 
Sbjct: 179 KKLSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENM---DRAIELTG 235

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             + +      L+ +L    G+++  +++  ++S L   N     K+++  R   S S++
Sbjct: 236 --LENPNSPMQLKEWLNE-KGLEIDSLAKKDVESAL--KNAEGDIKEVLELRQELSKSSV 290

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            K + +     +D R+RG LQFYGA+RTGR+
Sbjct: 291 RKYDAMKNVKGNDKRVRGLLQFYGANRTGRY 321


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 178/400 (44%), Gaps = 65/400 (16%)

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  +D R RG  QFYGA+RTGRW+G + Q QNLP+    +    + +  +   
Sbjct: 6   KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65

Query: 351 ETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           ++++    D     S  +R+  IA  G K  VAD + IEARV+A +AGE W+   F NG 
Sbjct: 66  DSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNGG 125

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ F+  ++K  ++   R  GK+ ELALGY G     K M             
Sbjct: 126 DIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG------------ 173

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  L     + +  AWR  +  ++ LW D 
Sbjct: 174 ----------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWWDF 205

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT- 582
                  ++   S ++  +    R  M      + I LPS R+L Y   + G+  +    
Sbjct: 206 DTAIKNAIKMHCSTASHGIKFTWRSGM------LLITLPSGRKLTYVKPRIGENKFGGES 259

Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                  AT +  R   YG K  EN+VQAISRD+L   MK  T +   I   VHDE++ E
Sbjct: 260 VTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMK--TLSHCFICGHVHDELIIE 317

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +    S+  LC  M + P W   + L+A+GY  + Y+K
Sbjct: 318 CSEK--VSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 189/703 (26%), Positives = 304/703 (43%), Gaps = 84/703 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQ 59
           LF+D ET S   L + G+  Y A+Q+    C + +         LW+  ++  +P  + +
Sbjct: 6   LFLDFETSSHTDLTEHGLGRYLADQSTRAYC-FTFRLPGMSTADLWEVGQR--VPEVITR 62

Query: 60  YLRDETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKN 111
           ++R   +  VAHN+ F+      + ++  G  D+P     +  C++  AR NGLP SL  
Sbjct: 63  HVRAGHLF-VAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAG 121

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           AC AL     + K  EG    A++ K    +P  D T A+H + +    +Y   D +A  
Sbjct: 122 ACEALGLP--VQKDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMV 173

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +++  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG 
Sbjct: 174 GVWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGG 233

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           + +  +   ++ Y   + G D+ D    TLK I +  N+    + LI  RL +S +    
Sbjct: 234 VLAVSEVEKIKTYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKS 292

Query: 292 LNTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCV-----FQPQNLPRQERSEEILTQT 343
              L   V   GRL+ +  ++GA     T R +G        +P+   +    E IL   
Sbjct: 293 AAILRAHVG--GRLQHSTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 350

Query: 344 IQ---ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399
           ++   A      +   L   +D  R    A+  G  LV ADL+GIEAR   WIAG+   +
Sbjct: 351 LRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELL 410

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G D Y    A  F    + V+K+QR IGKV  LAL Y GGA  F +MA++ G+ L
Sbjct: 411 EAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHL 470

Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             +Q  + V     +   FE W     + + M    P   +   +    C  V       
Sbjct: 471 PPEQVDEIVLNWRAARPAFERWWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFV---- 526

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H G   L   L  G A +      +     ANVP                     +Y   
Sbjct: 527 HDG-RALRMQLPSGRA-ISYHNARLHLEPGANVP-------------------IAIYDKP 565

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           +G   Y+ T   ++         L+ N+ Q ++RD+    + +  +    IV  V+DE +
Sbjct: 566 EG---YIETLDRKI---------LSNNMTQGLARDLFWSVLLDVDRV-EQIVHHVYDEAL 612

Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 613 LEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 179/707 (25%), Positives = 295/707 (41%), Gaps = 92/707 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLR 62
           LF+D E  S   L + G+  Y +        + +    +   D  E  + +P  ++ +L 
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWEYGNVVPKQIVMHLT 65

Query: 63  DETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKNACL 114
              +  VAHN+ F+     ++ ++  G  D+P     +  C++  AR NGLP SL  AC 
Sbjct: 66  SGGLF-VAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 124

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL     + K  EG    A++ K    +P  D T  +H + +    +Y   D +A   ++
Sbjct: 125 ALGLP--VQKDTEG----AKWMKEIAANP--DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG I +
Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             +   ++ Y   + G D+ D    TLK I +  N+    + LI  RL +S +       
Sbjct: 237 VTEVAKIKEYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 295

Query: 295 LSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNR 349
           L   V   GRL+    ++GA     T R +G   Q  N   PR  +        + A  R
Sbjct: 296 LRAHVG--GRLQHHTIYHGALSGRSTARGAGGA-QTLNTARPRPGKKTADCEAILDACLR 352

Query: 350 GE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           G+        +   L   +D  R    A+  G  LV ADL+GIEAR+  W+A +  K++A
Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-- 459
           F  G D Y       ++   D V+K+QR +GK  +LALG+ G    F +MA++ G+ L  
Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLPP 472

Query: 460 QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           +Q S+ V         FE W        W   +Y      D+      E+V    R    
Sbjct: 473 EQVSEIVYNWRAGRPAFERW--------WSLCEYSALMALDQ---PGREIVMPVGR---- 517

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
                                        N  ++   +  R + + LPS R + Y + + 
Sbjct: 518 ----------------------------NNCSQITFVKDARALRMHLPSGRAISYHNARL 549

Query: 576 DCSY-LNTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                 N   +   +   Y        L+ N  Q +SRD+    + +  +   +IV  ++
Sbjct: 550 HLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRV-EEIVHHIY 608

Query: 630 DEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE + E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 609 DEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655


>gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
 gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
          Length = 838

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 222/498 (44%), Gaps = 61/498 (12%)

Query: 6   IDIETRSPQPLPKVGVWAYA-EQAVITLC-AYAWDDE-PVKLWDRTE------QSAMPSD 56
           ID ETRSP  + K G + Y+ + A   +C AY    E  VKLW          +S  P+D
Sbjct: 41  IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPTD 100

Query: 57  LLQYLRDETVMCVAHNSLFER-----ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
           L  ++     +  AHN+ FER     I+  +     I   +W C++  A    LP SL+ 
Sbjct: 101 LFAFIL-AGGLVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLEE 159

Query: 112 ACLALNFSEHLTKMEEGKALIARFCK------GSIDSPPYDCTRANHVQAWQLFG----- 160
           A  A++    + K  EG+ L+ + CK        ++   +D        A++  G     
Sbjct: 160 AVAAMDLG--IDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVY 217

Query: 161 -----------EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
                      +YCK+DV A   L   L  LS+ E + W +DQ +N RG R DL +  + 
Sbjct: 218 HETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQA 277

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
             + ++ RK+L+  +  LT GI  ++++  A++ +L     +DL D +  TLK  L +  
Sbjct: 278 LSMASEWRKRLNSILEALT-GITSATKRA-AVKEWLVEEEDLDLPDTAADTLKHYLENEE 335

Query: 270 ITQLAKDLILNRLASSGSAILKLNTL-SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           ++  A+ ++      + ++  K N +  +A   D R R  + ++GA  TGRW+G   Q  
Sbjct: 336 LSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQVH 394

Query: 329 NLPRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLA 382
           N P ++   +   +  + +  G+         D +   S  +R  I+A  G++L+VAD A
Sbjct: 395 NFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYA 454

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYV------------TTYAKAFNTPIDKVSKEQRA 430
            IEAR + W A +   +  F  G+DIY                AK +  P   +    R 
Sbjct: 455 AIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQ 514

Query: 431 IGKVMELALGYQGGAKVF 448
            GK   L LGY  G   F
Sbjct: 515 FGKQAILGLGYGMGYMTF 532



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 17/134 (12%)

Query: 558 VHIVLPSSRRLVYSD------------VKGDCSYLNT--ATSQLMRERTYGGKLTENIVQ 603
           +H  LPS RR+ Y D             K    Y++    T + +R  TYGGK+ ENI Q
Sbjct: 706 LHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTATYGGKIVENITQ 765

Query: 604 AISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661
           A++RDI+ E M N+ K G  YD +++VHDE+V E  D     +    +LM+  P WA G 
Sbjct: 766 AVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEV-DEDKGDLEEFETLMSDLPIWAAGC 824

Query: 662 PLKAEGYEAKRYRK 675
           P+ AE    KRYRK
Sbjct: 825 PIVAEAERFKRYRK 838


>gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 300

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/230 (38%), Positives = 118/230 (51%), Gaps = 43/230 (18%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           L DM + T++  L    + +  ++L+  R  +S ++  K   L    S DGRLRGTLQF 
Sbjct: 13  LPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQFN 72

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCII 369
           GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D + L S  +RSC+I
Sbjct: 73  GASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLI 132

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------------------------- 404
           A   KKLVVADL+ IE RVLAW+AGE  K++AF +                         
Sbjct: 133 APTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGALRGA 192

Query: 405 ---------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
                          G+DIY   YA +F      V+K+QR IGKV ELAL
Sbjct: 193 PITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELAL 242


>gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2]
 gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2]
          Length = 658

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 171/658 (25%), Positives = 282/658 (42%), Gaps = 123/658 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWI--------------CTSVLARTNGLPSSLKNACL 114
           VAHN+ F+ +++   L       RW+              C++  AR NGLP  L  A  
Sbjct: 73  VAHNAAFDALIWNDVL------PRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRAAE 126

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL     L K  EG A +    K  + +P +  T A H + +    +Y   D +    L+
Sbjct: 127 ALGLP--LQKDREGAAAM----KELMHNPEW--TPATHPELFARTYKYALLDTDVMVALW 178

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +   P+   E+  W LD  IN RG+ +D++    + E+    +  +D ++   T G I +
Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS-----AI 289
           +     ++ +   + G +L +    ++K++L+  ++ ++ +D++  RL +S +     AI
Sbjct: 239 TSVIKQIQSFAAGL-GAELDEAGRESVKALLTRDDVPEVLRDVLTLRLDASRAPKKHDAI 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS--GCV-FQPQNL--PRQERSEEILTQTI 344
           L+ +        +GR+  +  ++GA  +GR +  GC   Q  N+  PR  R  +     +
Sbjct: 298 LRAHV-------NGRMCHSTVYHGA-LSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYL 349

Query: 345 QALNRGE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGED 396
            A  R +        +  PL   +D  R    A+N G  LVVADL+GIEAR   W+A ++
Sbjct: 350 DAARRRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDE 409

Query: 397 WKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
             +  +  G D Y    A  F+ P  D V+ +QR IGK+  LAL + GG      MA   
Sbjct: 410 GMLVEYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAY 469

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHL----WMQDQYPEFAVKDKLIGTACELVKKAWR 511
           GL+L   S++++       W   ESH      W   +Y      D+              
Sbjct: 470 GLEL---SEDLRRKIV---WSYRESHPALSTWWASLEYAALIALDQ-------------- 509

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSI--SARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                          G A VV  G  +  SA  V +   L M          LPS R + 
Sbjct: 510 --------------PGRAVVVPIGRGLCTSATFVRDTTALRME---------LPSGRAIS 546

Query: 570 YSDVK-----GDCSYL------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           Y + +     G  + +      N     L R+      L+ N+ Q ++RD+  E M +  
Sbjct: 547 YHNARLVLEPGASAPIAVYDKPNGVVETLDRK-----ILSNNMTQGLARDLFWEAMLSVA 601

Query: 619 KNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                IV  V+DE++ E P+      +  L + ++K P WA GLPL AEG+ +  +RK
Sbjct: 602 PV-EQIVHHVYDEVILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658


>gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c]
 gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 252

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 134/265 (50%), Gaps = 27/265 (10%)

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWE 476
           ++KEQR IGKV ELALGY GG   F   A+   +DL+  +         ++  +   +W 
Sbjct: 1   MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQAVFPPLLLQEATELLEWT 60

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +A        +  P F + D+    AC++ K+AWR  H  +   W+ L       +    
Sbjct: 61  KA--------NHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPE 111

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRE 590
           +           + ++  +  + + LPS R L Y+    D  G  SY+ T   T +  R 
Sbjct: 112 TTH-----TCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRL 166

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D P F+   L +L
Sbjct: 167 TTYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAAL 226

Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675
           M   P WA+GLPL AEG++  RYRK
Sbjct: 227 MATPPPWAEGLPLAAEGFDTYRYRK 251


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 207/476 (43%), Gaps = 93/476 (19%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR----WI------CTSVLARTN 103
           P+DL++++ +   +  A N  FE  ++   L     +KR    W+      C    AR  
Sbjct: 107 PTDLIEHIANGGPI-AAWNITFEFWIWNMVL-----AKREGWPWLQLEQCYCDMAKARRF 160

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE-- 161
            LP SL  A  AL  S    K ++GK LI + C+      P   T+A  +  W L+    
Sbjct: 161 SLPGSLDAAAQALKTSP---KDKKGKQLINKLCR------PVSATKARPLPRWTLYTAPQ 211

Query: 162 -------YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                  YC +DV++   +      ++  ER+ WL DQ IN RG ++D++ +    +++ 
Sbjct: 212 DYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALDIVD 271

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           Q  ++   ++  +T+G + S  +   +  +L  + G  + +++  ++   L   ++   A
Sbjct: 272 QTTRRFTMELAAITNGAVGSVSEVAKMTDFLAGL-GCRMHNLTADSVSEALERDDLNPTA 330

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           + ++  R A +G+ + KL +L   +SSDGRLR    F+GA  TGRWS    Q QNL  + 
Sbjct: 331 RRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLTSKG 389

Query: 335 RSEEILTQTIQALNRGETI----------------------------------------- 353
              +      + + +  TI                                         
Sbjct: 390 PKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHRNLD 449

Query: 354 ------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                  DP+ L S C+R   IA+ GKK V  D + IEA VLA +A  +W+++ F     
Sbjct: 450 LIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTHGK 509

Query: 408 IYVTTYAKAFNTPIDKV--SKEQ--------RAIGKVMELALGYQGGAKVFKTMAS 453
           IY  + +K    P +++   KEQ        +++GKV ELA GY G    +K   +
Sbjct: 510 IYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGA 565


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 156/389 (40%), Gaps = 91/389 (23%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L T+      DG L   L+++GA  TGRW+G                      Q  NR  
Sbjct: 294 LETMQSRCRRDGSLPFGLKYFGAIATGRWAGDA----------------GLNFQNFNREA 337

Query: 352 TIA-DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
               DP        R C++A  G KL++ADL+ IE RVLAWIAG+        NG  IY 
Sbjct: 338 YYGVDP--------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQ 389

Query: 411 TTYAKAFNTPIDKVSKEQRA---IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
                + N     + KE      + K   + LGY  G K F+++A   GL++        
Sbjct: 390 AHAETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMS------- 442

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                          IG A   V   +R  +  ++ LW+ + + 
Sbjct: 443 -------------------------------IGEAKRTVDD-FRKANPRIVSLWQAVEDS 470

Query: 528 FACVVQEGGSISARRVANVPRLVMRRH-KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                  MR H      + LPS R + Y DV+ +     T    
Sbjct: 471 -----------------------MRYHIGSTFFMYLPSLRSIRYFDVQEEEGLTATTERG 507

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R   YGGKLTEN+VQA +RD+  EG+    K G  I+ TVHDE++ E P+    +V T
Sbjct: 508 GRRLHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVET 567

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +  L+ + P W  GLP+ AEG E   Y K
Sbjct: 568 VTDLLAQTPDWIPGLPVAAEGIETSCYTK 596


>gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e]
 gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e]
          Length = 306

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 129/286 (45%), Gaps = 47/286 (16%)

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------- 485
           EL LGY+GG   F T A + GLDL + ++ +  T     W      + W           
Sbjct: 22  ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 81

Query: 486 ---QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-----S 537
              +D  P + + DK +   C+ +K+ WR  H   +  W+DL +G    V+  G      
Sbjct: 82  PGEKDDRPSY-ILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 140

Query: 538 ISARRVANVPRLVMRRHKRD----------VHIVLPSSRRLVYSDV-------KGDCSYL 580
              RR       + R  + D          + + LPS R L Y  +         +   +
Sbjct: 141 AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 200

Query: 581 NT-------ATSQLMRE----RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           NT         +QL R+     T+GGK  ENIVQA+ RD+L   M N    GY IVL+VH
Sbjct: 201 NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 260

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V ETPDT  ++V  L  LM   P WA G PL AEG E KRY K
Sbjct: 261 DELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 183/709 (25%), Positives = 297/709 (41%), Gaps = 97/709 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQY 60
           LF+D ET S   L + G+  Y +        + +         LW+  +   +P  ++ +
Sbjct: 6   LFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEVGQ--PVPKQIIGH 63

Query: 61  LRDETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKNA 112
           L       VAHN+ F+      + ++  G  D+P     +  C++  AR NGLP SL  A
Sbjct: 64  LNGSPF--VAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C AL     + K  EG    A++ K    +P  D T A+H + +    +Y   D +A   
Sbjct: 122 CEALGLP--VQKDTEG----AKWMKEIAANP--DWTPADHPEHFTRTYKYALIDTDAMVG 173

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG I
Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +  +   ++ Y   + G D+ D    TLK I +  N+    + LI  RL +S +     
Sbjct: 234 LAVTEVAKIKEYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292

Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQAL 347
             L   V   GRL+    ++GA     T R +G   Q  N   PR  +        + A 
Sbjct: 293 AILRAHVG--GRLQHHTIYHGALSGRSTARGAGGA-QTLNTARPRPGKKTADCEAILDAC 349

Query: 348 NRGE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399
            RG+        +   L   +D  R    A+  G  LV ADL+GIEAR+  W+A +  K+
Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G D Y       ++   D V+K+QR +GKV +LALG+ GG   F +MA++ G+ L
Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469

Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             +Q S+ V         FE W        W   +Y      D+                
Sbjct: 470 PPEQVSEIVYNWRAGRPAFERW--------WSLCEYSVLMALDQ--------------PG 507

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            + V+ + +D       V                     R  R + + LPS R + Y + 
Sbjct: 508 REVVMPVGRDFCSQITFV---------------------RDARALRMHLPSGRAISYHNA 546

Query: 574 KGDCSY-LNTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +       N   +   +   Y        L+ N  Q ++RD+    + +  +   +IV  
Sbjct: 547 RLHLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHH 605

Query: 628 VHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+DE + E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 606 VYDEALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 223

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 113/206 (54%), Gaps = 5/206 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++ EPVK+WD T+   MP DL  YL D
Sbjct: 10  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K  L ID+P  R   T V A  +GLP +L + C   N +   
Sbjct: 69  PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI--P 179
           TK +EGKALI  FCK    +S     T   H + W  F  Y   D+ A RE+++ L    
Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDL 205
           ++  E  LW LDQ IN RG  +D++L
Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVEL 214


>gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46]
          Length = 330

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 158/336 (47%), Gaps = 32/336 (9%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60
           IDIE  S   + K G + Y  AE   I + AY+ D  PV   D T+    P  +D   + 
Sbjct: 3   IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K + GK LI  F      S P   T+ N            + WQ F +YC RDVE
Sbjct: 123 QNQ--KDKAGKNLIRYF------SMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVE 174

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q + +L +   +
Sbjct: 175 VEMAIANKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQ 234

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +TD  + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S 
Sbjct: 235 ITD--LENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSK 290

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           +++ K N + + + SD R+RG  QFYGA  TGRW+G
Sbjct: 291 TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAG 325


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 181/709 (25%), Positives = 295/709 (41%), Gaps = 97/709 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQY 60
           LF+D E  S   L + G+  Y +        + +         LW+  +   +P  ++ +
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEVGQ--PVPKQIVGH 63

Query: 61  LRDETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKNA 112
           L       VAHN+ F+     ++ ++  G  D+P     +  C++  AR NGLP SL  A
Sbjct: 64  LNGSPF--VAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C AL     + K  EG    A++ K    +P  D T A+H + +    +Y   D +A   
Sbjct: 122 CEALGLP--VQKDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVG 173

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++  +PL    +  + +D  IN RG   D++    +++L A    +LD ++  LTDG I
Sbjct: 174 VWENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +  +   ++ Y   + G D+ D    TLK I +  N+    + LI  RL +S +     
Sbjct: 234 LAVTEVAKIKEYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292

Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQAL 347
             L   V   GRL+    ++GA     T R +G   Q  N   PR  +        + A 
Sbjct: 293 AILRAHVG--GRLQHHTIYHGALSGRSTARGAGGA-QTLNTARPRPGKKTADCEAILDAC 349

Query: 348 NRGE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399
            RG+        +   L   +D  R    A+  G  LV ADL+GIEARV  W+A +  K+
Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKL 409

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G D Y       ++   D V+K+QR +GK  +LALG+ GG   F +MA++ G+ L
Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHL 469

Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             +Q S+ V         FE W        W   +Y      D+                
Sbjct: 470 PPEQVSEIVYNWRAGRPAFERW--------WSLCEYSVLMALDQ---------------- 505

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                        G   V+  G +       N  ++   +  R + + LPS R + Y + 
Sbjct: 506 ------------PGREIVMPVGRN-------NCSQITFVKDARALRMHLPSGRAISYHNA 546

Query: 574 KGDCSY-LNTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +       N   +   +   Y        L+ N  Q ++RD+    + +  +   +IV  
Sbjct: 547 RLHLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHH 605

Query: 628 VHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+DE + E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 606 VYDEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7]
 gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11]
          Length = 237

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N L F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA---NHVQAWQLFGEYCKRDVEA 169
           C  LN    + K + GKALI RF K +  +  Y   R     H + W  F  Y K D+ +
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTADTHPKEWAEFIAYAKSDITS 178

Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            RE++K++    + E +  +  LDQ INDRG+++D+ L     E + + +++L E+
Sbjct: 179 MREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEE 234


>gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13]
          Length = 237

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N L F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA---NHVQAWQLFGEYCKRDVEA 169
           C  LN    + K + GKALI RF K +  +  Y   R     H + W  F  Y K D+ +
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTADTHPKEWAEFIAYAKSDITS 178

Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            RE++K++    + E +  +  LDQ INDRG+++D+ L     E + + +++L E+
Sbjct: 179 MREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEE 234


>gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638]
 gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638]
 gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68]
          Length = 231

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 11/233 (4%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           F T A    LDL + +         +   +A+S +     +   + + +++   AC+ +K
Sbjct: 4   FITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVF-IACDSLK 62

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           + WR  H      W +L       +      + ++      L +RR    + I LPS R 
Sbjct: 63  RLWRRAHPATCDFWYELERTVRTAIA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRA 117

Query: 568 LVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
           + Y      KG+ +Y+  N+ + +  R +TYGGKL EN+ QA +RD+L   M      GY
Sbjct: 118 VCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGY 177

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            IVLTVHDEI+SE PD+P +S   +  L+   P WA  +PL A G+E+ RYRK
Sbjct: 178 SIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230


>gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7]
 gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11]
          Length = 267

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 116/266 (43%), Gaps = 47/266 (17%)

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------QDQYPEFAVKDKLIGTA 502
           GLDL + ++ +  T     W      + W              +D  P + + DK +   
Sbjct: 3   GLDLIEXAKTMAGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSY-ILDKKVWRT 61

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS---ISARRVANVPRLVMRRHKRDVH 559
           C+ +K+ WR  H   +  W+DL +G    V+  G      A   +N  R +      ++ 
Sbjct: 62  CDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTTEID 121

Query: 560 ------------IVLPSSRRLVY------------------SDVKGDCSYLNTATSQLMR 589
                       + LPS R L Y                  ++V+      N  T Q   
Sbjct: 122 SSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQWTT 181

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             T+GGK  ENIVQA  RD+L   M NA   GY IVL+VHDE+V ETPDTP ++V  L  
Sbjct: 182 LYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAELEK 241

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           LM   P WA+G PL AEG E KRY K
Sbjct: 242 LMCALPEWAEGFPLVAEGAELKRYAK 267


>gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 199

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/196 (40%), Positives = 106/196 (54%), Gaps = 14/196 (7%)

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +Q P F + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+ 
Sbjct: 10  NQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 62

Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599
              +  ++ R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL E
Sbjct: 63  CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVE 122

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           NI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+
Sbjct: 123 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 182

Query: 660 GLPLKAEGYEAKRYRK 675
           GLPL AEG+E  RYRK
Sbjct: 183 GLPLAAEGFETHRYRK 198


>gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 181

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 3/176 (1%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AY+++  PVK+WD T+   MP+DL  YL D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++  K L ID+P  R   T V A  +GLP +L + C   N +   
Sbjct: 64  PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            K +EGKALI  FCK    +S     T   H + W  F  Y   D+ A RE+++ L
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHL 179


>gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
 gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
          Length = 290

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 105/196 (53%), Gaps = 14/196 (7%)

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +  P F + D+    AC++ K+AWR  H  +   W+ L     C V +  +I     A+ 
Sbjct: 101 NHRPTFGLSDRAW-LACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 153

Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599
              +  ++ R  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL E
Sbjct: 154 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVE 213

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           NI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+
Sbjct: 214 NITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 273

Query: 660 GLPLKAEGYEAKRYRK 675
           GLPL AEG++  RYRK
Sbjct: 274 GLPLAAEGFQTHRYRK 289


>gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 240

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 123/286 (43%), Gaps = 59/286 (20%)

Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLD 458
           F NGED+Y  T +  F  P++K  V+ E R  GK+  LA GY G     K M +   GL 
Sbjct: 1   FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLS 60

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                               KD+L     + +  AWRA +  ++
Sbjct: 61  ------------------------------------KDEL-----QPIVDAWRAANPNIV 79

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
           QLW D+       +  G  ++ R       L   +    + I LPS RRL Y     G  
Sbjct: 80  QLWHDVDNAATRAISTGSPVTLRN------LGFEKKSGMLFINLPSGRRLAYVKPGIGMN 133

Query: 578 SYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
            +  T+ +        +  +  TYGGKL ENIVQA +RD+L E +      G  IV+ +H
Sbjct: 134 RFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIH 193

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V + P     +V  +C+L+ + P    GLP+ A GYE   Y+K
Sbjct: 194 DEVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239


>gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 205

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 14/207 (6%)

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
           E  E+      +  P F + D+    AC++ K+AWR  H  +   W+ L     C V + 
Sbjct: 5   EAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD- 58

Query: 536 GSISARRVANVPRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLM 588
            +I     A+    +  ++ R  + + LPS R L Y+    D  G  SY+ T   T +  
Sbjct: 59  -AIGHPETAHTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWT 117

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L 
Sbjct: 118 RITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLA 177

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +LM   P WA+GLPL AEG++  RYRK
Sbjct: 178 ALMATPPPWAQGLPLAAEGFQTHRYRK 204


>gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 117/271 (43%), Gaps = 60/271 (22%)

Query: 417 FNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFE 473
           F  PI++++K    R  GK+ ELALGY G      +M +   GL                
Sbjct: 2   FGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMGALAMGLS--------------- 46

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                       +D+ P       L+ T        WR  +  + Q W D+ E     V+
Sbjct: 47  ------------EDELP------GLVST--------WRNANPHITQFWWDVDEAAVRAVR 80

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATS------- 585
           E      R+   V  +  +     +  +LPS R+L Y   + G   Y     +       
Sbjct: 81  E------RKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134

Query: 586 -QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYG KL ENIVQ  SRDIL E M    K G+ IV  VHDE V E P+    SV
Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +C +M + PSW  GLPL+A+GYE + Y+K
Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224


>gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
          Length = 154

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 72/120 (60%), Gaps = 6/120 (5%)

Query: 562 LPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
           LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M 
Sbjct: 34  LPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMP 93

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  RYRK
Sbjct: 94  AIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 153


>gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 132

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 72/120 (60%), Gaps = 6/120 (5%)

Query: 562 LPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
           LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M 
Sbjct: 12  LPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMP 71

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  RYRK
Sbjct: 72  AIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 131


>gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 169

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 72/120 (60%), Gaps = 6/120 (5%)

Query: 562 LPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
           LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M 
Sbjct: 49  LPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMP 108

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 109 AIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168


>gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
 gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
          Length = 239

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 121/288 (42%), Gaps = 61/288 (21%)

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           +K F    DIY  + +  F+ P++K  V+   R  GK+ ELALGY G       + +   
Sbjct: 1   MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIGA--- 57

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           LD          T   ED  Q                            +  +WRA +  
Sbjct: 58  LD----------TGLSEDELQP---------------------------LVDSWRASNPN 80

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-- 574
           ++Q W D+     CV     +I  R       +        + IVLPS RRL Y   K  
Sbjct: 81  IVQFWWDVDR---CVKT---AIKQRTATETHGIRFVYQNGILFIVLPSGRRLCYVKPKIG 134

Query: 575 ------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
                    +Y    T++   R  +YG K  ENIVQAISRDILC  M+  T +   IV  
Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMR--TLSHCFIVGH 192

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE++ ETP     +   +C  + + P W  GL L+A+GYE   Y+K
Sbjct: 193 VHDELIIETPMDADLT--AICEQIGRTPKWIYGLLLRADGYETAFYKK 238


>gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
 gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
          Length = 160

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/133 (45%), Positives = 78/133 (58%), Gaps = 6/133 (4%)

Query: 549 LVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIV 602
           + M+  +  + + LPS R L Y+    D  G  SY+ T   T +  R  TYGGKL ENI 
Sbjct: 27  ITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENIT 86

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662
           QA+SRD+L   M      GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLP
Sbjct: 87  QAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLP 146

Query: 663 LKAEGYEAKRYRK 675
           L AEG++  RYRK
Sbjct: 147 LAAEGFQTHRYRK 159


>gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46]
          Length = 225

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 116/274 (42%), Gaps = 66/274 (24%)

Query: 417 FNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFE 473
           FN P++ ++K    R  GKV ELALGYQGGA   K M +   G++  +    V S     
Sbjct: 2   FNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVDS----- 56

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                               WR  +  ++  WK      AC   
Sbjct: 57  ------------------------------------WRNANPNIVNFWK------ACQEA 74

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY-----------LN 581
              ++ +R+  +   L     K  + I LPS R L Y     G+ S+           LN
Sbjct: 75  AINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
              S+L   +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE++ E P    
Sbjct: 135 RKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSN 191

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 192 -GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224


>gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 100

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 56/89 (62%)

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           ++R  +YGGKL ENIVQA++RD+    M    + G+ IV+ VHDEIV + P    F+V  
Sbjct: 11  VVRLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFTVAD 70

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            C LM   P WA GLPL A+GYE   YRK
Sbjct: 71  ACVLMATLPDWAAGLPLDADGYECDYYRK 99


>gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 222

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 111/271 (40%), Gaps = 63/271 (23%)

Query: 417 FNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFE 473
           FN  ++K  V+   R  GK+ ELALGY G     K+M +   G++ ++    V       
Sbjct: 2   FNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQPLVT------ 55

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                              AWR  +  + +LW D+       V+
Sbjct: 56  -----------------------------------AWRQSNSNITKLWWDVDRAVKVCVK 80

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------SDVKGDCSYLNTA---T 584
           +        +  + +  M      + IVLPS RRL Y       +V G  S        T
Sbjct: 81  QKTPTETHGIKFIYQSGM------LFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGT 134

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  +YG K  ENIV AISRDIL   M+  T     IV  VHDEI+ E      FS 
Sbjct: 135 KKWERIESYGPKFVENIVHAISRDILYHAMQ--TLKNCSIVAHVHDEIIIEADMRMSFS- 191

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +C  M + PSWA GL L A+GYE + Y+K
Sbjct: 192 -AICEQMARTPSWANGLLLSADGYECQFYQK 221


>gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 284

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 29/287 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P  +D
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 57  LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163
             L       K + GK LI  F      S P   T+ N           ++ WQ F +YC
Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            RDVE    +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L 
Sbjct: 173 IRDVEVEMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           +    +T   + +      L  +L    G+D+ ++ + T++  L  +
Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA 277


>gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 324

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 51/77 (66%)

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  WA
Sbjct: 247 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 306

Query: 659 KGLPLKAEGYEAKRYRK 675
             LPL A G+E  RYRK
Sbjct: 307 WDLPLSANGFETYRYRK 323


>gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 341

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 40/261 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + ++ ID+ET S   + K GV+ YAE     I L A + D   V ++D      +P ++L
Sbjct: 4   IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63

Query: 59  QYLRDETVMCVAHNSLFERILF------------------KKTLGIDIPSKRWICTSVLA 100
             +  + V+  A N+ FERI                    + T+G  +    W CT + +
Sbjct: 64  DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN--------- 151
              GLP SL+     L   +   KM+EGK LI  FC       P   T++N         
Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQ--KMKEGKDLIRYFCV------PCKPTKSNGGRTRNFPM 175

Query: 152 HV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           H  + W +F  Y KRDVE    + ++L   P+ D   + +LLDQ INDRG  +DL +V  
Sbjct: 176 HAPEKWTVFKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVEN 235

Query: 209 LQELIAQERKKLDEDIVKLTD 229
                 + +  + ++++ LTD
Sbjct: 236 AIAFDERSKATITDEMLGLTD 256


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 43/254 (16%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVD 255
           G+  D  ++L L+E I ++ +KL  +I +L  ++  I S++Q   L   LF    + ++ 
Sbjct: 498 GFVTDRKVLLDLKEDINKDLEKLTSEIYELAGSEFNINSTKQ---LGEVLFKDLDLPVIK 554

Query: 256 MSE---GTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
            ++    T  S+L      H  I ++ K   L +L S+      +  L +A+  DGR+R 
Sbjct: 555 KTKTGFSTDASVLEKLRDKHQIIPKIEKYRELFKLQST-----YIEGLEKAIDDDGRIRS 609

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T +    + TGR S      QNLP +              + G             +R  
Sbjct: 610 TFR-QNIAATGRLSSQDPNLQNLPIK-------------TDEGR-----------LIRKA 644

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
             A  GK L+ AD + IE R+LA ++G++  I+AF NGEDI+  T +K F+TP+D+V+K 
Sbjct: 645 FKAGQGKILIDADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKR 704

Query: 428 QRAIGKVMELALGY 441
           QR+  K +   + Y
Sbjct: 705 QRSDAKAVNFGIIY 718


>gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023]
          Length = 155

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTATSQLMR 589
           +IS R       L        + I LPS R L Y   K           Y         +
Sbjct: 10  AISTRESQKYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRK 69

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           + TYGGKL ENIVQAI+RD L   ++     G   V+ VHDE ++E P++   SV  L +
Sbjct: 70  QYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAITEVPESE-SSVDKLNA 128

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 129 ILAEPISWAPGLPLQGDGFSSDFYMK 154


>gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           R  TYG KL ENIVQA SRD+L E M+     G  +V+ +HDE V + P     S+ T+ 
Sbjct: 8   RIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNR--SLDTMV 65

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            LMTK P WA GL L A G+ +  Y+K
Sbjct: 66  QLMTKVPDWANGLILNAAGFVSDFYKK 92


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 134/345 (38%), Gaps = 80/345 (23%)

Query: 283 ASSGSAILKLNTLSEAVS----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           A S  A+ +   L +AV+    +D +L   L +YGA  TGR+ G             +E 
Sbjct: 18  AKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGA-HTGRYGG-------------NEG 63

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           +    +Q L RG              R  + A  G+ + VAD + IEAR++AW A E   
Sbjct: 64  L---NLQNLQRGSE-----------HRKALTAPFGQLVYVADSSNIEARIVAWFAQETAL 109

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +  F NG D Y T     +  P+ K + + +R +GKV  L L Y  GA+ F         
Sbjct: 110 LNQFKNGIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMGARTFH-------- 161

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                        T E          W    +PE     K       ++KK W   +Q +
Sbjct: 162 ------------RTMESGPMGIPPMPWA---FPEIEKIVKTYRRTHPMIKKCWEIGNQII 206

Query: 518 --------LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                   L+ W+ LT    C+    G          P L      +++         +V
Sbjct: 207 QKMIRKDTLETWRCLTVRHQCLELPNGM-----YLQFPNL----RNKEIQTAQGPQYEVV 257

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           Y       SY +  + +L+ +R YGGKL ENI QA++   + E M
Sbjct: 258 YD------SY-DYKSKKLVEKRLYGGKLLENIAQALAGLAMKEMM 295


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 5/112 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ GKK++ AD + IE R++A I+ E+  I AF NGEDI+V+T A+ F+ P+++
Sbjct: 710 IRGAFVAAEGKKIISADYSQIELRLIAEISNEENMILAFQNGEDIHVSTAARLFDIPLEE 769

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           V+K QR   K +   + Y  GA     +A   GL   +  Q ++  S FE++
Sbjct: 770 VTKTQRGQAKTVNFGIIYGQGA---FALAEQTGLSRTEAKQMIE--SYFENY 816


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 33/179 (18%)

Query: 270 ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           ++ LA D  +I N L   G A LK   ++ L E V  DGR+  T      + TGR S   
Sbjct: 642 LSYLAADHTIIQNVLDYRGLAKLKSTYVDALPEQVEEDGRVH-TDYMQTVAATGRLSSNN 700

Query: 325 FQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382
              QN+P R ER  +                         VR   +  N    L+ AD +
Sbjct: 701 PNLQNIPIRTERGRQ-------------------------VRKAFVPKNEDYVLLAADYS 735

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ ED  I+AF NGEDI+ +T AK FN PI++V++EQR+  K +   + Y
Sbjct: 736 QIELRIIAALSEEDTMIEAFKNGEDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIY 794


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   ++  GKK++ AD + IE R++A I+GE+  IKAF +GEDI+ +T AK F  P+ +
Sbjct: 705 IRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQDGEDIHASTAAKLFKIPLAE 764

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           VSK QR+  K +   + Y  GA     +A   GL   +  Q +++
Sbjct: 765 VSKTQRSQAKTVNFGIIYGQGA---FALAEQTGLSRTEAKQMIEA 806


>gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 180

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
            +WR  +  +   W D+       + +      R +    +  M      + I LPS R 
Sbjct: 13  NSWRNSNPMITAFWWDIDRAVKTTITQRIQTEVRGICFFYKSGM------LFIKLPSGRL 66

Query: 568 LVYSDVK-GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           L Y   + G+  Y   +        T +  R  +YG K  ENIVQA+SRDILC  MK  T
Sbjct: 67  LSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVSRDILCYAMK--T 124

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                IV  VHDE++ E   +P      +C  M ++P W   + L+A+GYE   Y+K
Sbjct: 125 LRHCFIVGHVHDELIIEC--SPDVDTNVICKQMGRSPDWMPDILLRADGYETNFYKK 179


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 25/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L+E +  DGR+  T Q   A+ TGR S      QN+P                    
Sbjct: 768 VDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQPNLQNIP-------------------- 806

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I D  G     +R   +A  G +LV AD + IE RVLA  +G++  ++AFA G+D++  
Sbjct: 807 -IRDEPG---RSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEGLLEAFARGQDVHAR 862

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F  P+++V+ EQR + K +   L Y
Sbjct: 863 TASEIFGVPLEQVTPEQRRVAKAVNFGLAY 892


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 27/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           ++ L + ++ DGR+  + Q    + TGR S      QN+P R E   E+           
Sbjct: 602 VDGLGKVIAPDGRIHTSFQ-NTVTATGRLSSTEPNLQNIPVRTELGAEL----------- 649

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A  GK LV AD + IE R+LA IAG++  I+AF  GEDI+ 
Sbjct: 650 --------------RKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGEDIHT 695

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T A+ F  P+D+V+K  R+  K +   + Y
Sbjct: 696 VTAAQVFGVPVDQVTKHMRSSAKAVNFGIVY 726


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 30/157 (19%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360
           DGR+  +     A+ TGR +      QN+P R ER ++                      
Sbjct: 659 DGRVHTSFAQTVAA-TGRLASNNPNLQNIPIRTERGQQ---------------------- 695

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              VR   +A  G K+V AD + IE R++A I+GE+  IKAF  G+DI+ +T +K F+ P
Sbjct: 696 ---VRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKAFKEGQDIHASTASKLFDVP 752

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +++VSK QR+  K +   + Y  G   F  +A   GL
Sbjct: 753 LNEVSKTQRSQAKTVNFGIIY--GQSAF-ALADQTGL 786


>gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 169

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 20/174 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  Y+ D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEY 162
                K+  GK L+  FC       P   T+AN  +           WQ F +Y
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQY 166


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 25/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L+E +  DGR+  T Q   A+ TGR S      QN+P                    
Sbjct: 780 VDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNLQNIP-------------------- 818

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I D  G     +R   +A  G +LV AD + IE RVLA  +G+   ++AFA G+D++  
Sbjct: 819 -IRDEPG---RSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGLVEAFAQGQDVHAR 874

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F  P+++V+ EQR + K +   L Y
Sbjct: 875 TASEIFGVPLEQVTPEQRRVAKAVNFGLAY 904


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           D  R C +A  G  LV+AD + IE R+LA ++G+   ++AF  GED++  T A  F  P 
Sbjct: 342 DEFRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFVEAFRRGEDLHRVTAATMFGVPK 401

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++V+KEQR+  K +   L Y  G    +++A+  G D
Sbjct: 402 EEVTKEQRSAAKRINFGLAYGRGP---RSLAAQLGTD 435


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 25/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L +L E +  DGR+R T +    + TGR S      QNLP   R+EE           G 
Sbjct: 492 LESLEECIDGDGRIRSTFK-QNVTATGRLSSTEPNLQNLPI--RTEE-----------GR 537

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           R    A N K L+ AD + IE RVLA +A +    +AF++  DI+  
Sbjct: 538 KI-----------RKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEAFSHDIDIHTK 586

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FNTPID+V+K QR+  K +   + Y
Sbjct: 587 TASEVFNTPIDEVTKLQRSEAKAVNFGIIY 616


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 25/155 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L   V   GR+  T     A+ TGR S      QN+P                    
Sbjct: 629 LDPLPRLVDPQGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------------- 667

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            +  PLG     +RSC IA  G+ LV AD + +E RVLA ++ +   ++AF NGEDI+  
Sbjct: 668 -VRGPLG---KRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHAR 723

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           T A  ++ P D+VS +QR   K +   L Y  GA+
Sbjct: 724 TAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGAQ 758


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 37/234 (15%)

Query: 220 LDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQL 273
           L+ DI +LT  I   + + + +    ++   L   + LVD  + T     S +   ++ L
Sbjct: 579 LNADIERLTSEIYEEAGEEFKISSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYL 638

Query: 274 AKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           AKD  +I   L   G + LK   ++ L E V+ DGR+  T      + TGR S      Q
Sbjct: 639 AKDHDIIQKVLDYRGLSKLKSTYVDALPEQVAQDGRVH-TDYMQTVAATGRLSSNNPNLQ 697

Query: 329 NLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           N+P R ER  ++                         ++ +       L+ AD + IE R
Sbjct: 698 NIPIRTERGRQVR------------------------KAFVPRDENHTLLAADYSQIELR 733

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++A ++ E+  I+AF +GEDI+ +T AK FN P+++V++EQR+  K +   + Y
Sbjct: 734 IIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIY 787


>gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           R  TYG KL ENIVQA SRD+L   M+     G  +V+ +HDE V + P     S+ T+ 
Sbjct: 8   RIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDR--SLDTIV 65

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +MT+ P WA GL L A G+    Y+K
Sbjct: 66  KIMTEVPDWADGLILNAAGFVGGFYKK 92


>gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 37/234 (15%)

Query: 220 LDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQL 273
           L+ DI +LT  I   + + + +    ++   L   + LVD  + T     S +   ++ L
Sbjct: 579 LNADIERLTSEIFAEAGEEFNIGSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYL 638

Query: 274 AKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           AKD  +I   L   G + LK   ++ L E V+ DGR+  T      + TGR S      Q
Sbjct: 639 AKDHDIIQKVLDYRGLSKLKSTYVDALPEQVAQDGRVH-TDYMQTVAATGRLSSNNPNLQ 697

Query: 329 NLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           N+P R ER  ++                         ++ +       L+ AD + IE R
Sbjct: 698 NIPIRTERGRQVR------------------------KAFVPRDENHTLLAADYSQIELR 733

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++A ++ E+  I+AF +GEDI+ +T AK FN P+++V++EQR+  K +   + Y
Sbjct: 734 IIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIY 787


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 25/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L +L E +  DGR+R T +    + TGR S      QNLP   R+EE           G 
Sbjct: 607 LESLEECIDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLPI--RTEE-----------GR 652

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           R    A +GK L+ AD + IE RVLA +A +    +AF+   DI+  
Sbjct: 653 KI-----------RKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTK 701

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+TPID+V+K QR+  K +   + Y
Sbjct: 702 TASEVFSTPIDEVTKLQRSEAKAVNFGIIY 731


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 128/286 (44%), Gaps = 53/286 (18%)

Query: 170 TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           T ELF  + IPL     D+ L        G  +D+D +  L E       +L+ DI  L 
Sbjct: 538 TEELFNDIEIPLLSVLADMEL-------EGINLDVDFLNSLSE-------ELNTDIKNLE 583

Query: 229 DGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKD--LILN 280
             I  ++ + + +    ++   L   + LVD  + T     S +   ++ LA+D  +I N
Sbjct: 584 TSIYEAAGEEFNIASPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKN 643

Query: 281 RLASSGSAILK---LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQER 335
            L   G A LK   ++ L + V  S GR+  T      + TGR S      QN+P R ER
Sbjct: 644 ILEYRGLAKLKSTYIDALPDQVEESTGRVH-TDYMQTVAATGRLSSNNPNLQNIPIRTER 702

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
             ++                         ++ +       L+ AD + IE R++A ++ E
Sbjct: 703 GRQVR------------------------KAFVPRDENYTLLAADYSQIELRIIAALSDE 738

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              I+AF NGEDI+ +T +K FN P+D+V++EQR+  K +   + Y
Sbjct: 739 TTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIY 784


>gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 92

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 4  LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
          LF D+ET S  P+   G   YAE A I L AYA++   VK+WD TE   MP+DL  Y   
Sbjct: 5  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63

Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIP 89
            ++ V HN  +F+ ++ K  L ID+P
Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLP 90


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +A+  DGR+R T +    + TGR S      QNLP +              + G    
Sbjct: 595 LEKAIDYDGRIRSTFR-QNIAATGRLSSQDPNLQNLPIK-------------TDEGR--- 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R    A  GK L+ AD + IE R+LA ++G++  I AF N +DI+  T +
Sbjct: 638 --------LIRKAFKAEEGKILIDADYSQIELRILASLSGDEHMIDAFINVDDIHRKTAS 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F+TP+++V+K QR+  K +   + Y
Sbjct: 690 KVFHTPLEEVTKRQRSEAKAVNFGIIY 716


>gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5]
          Length = 124

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S  PL K GV+ Y E     I L AY+ D++PV++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNA 112
             L DE V+  A N+ FERI   + LG      +  + W C+ + + T GLP SL+  
Sbjct: 61  LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 102/254 (40%), Gaps = 60/254 (23%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L +   +DGR+  TL    A+ TGR S      QN+P                    
Sbjct: 588 LDPLPKLADADGRIHTTLNNM-ATATGRLSSSNPNLQNIP-------------------- 626

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I  PLG     +R C +A  GK LV AD + IE RVLA ++GE   + AFA G DI+  
Sbjct: 627 -IRGPLG---RRMRECFVAGPGKTLVAADYSQIELRVLAHLSGEPALLSAFAAGADIHAR 682

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------------------AKVFKTMA 452
           T +  F+ P  ++  ++R   K +   L Y  G                   AK F+ ++
Sbjct: 683 TASLLFDKPEAEIGPDERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIAKYFERLS 742

Query: 453 SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGT 501
                 L  F  N+  ++  + +              ES +  +  Q    A+   + G 
Sbjct: 743 G-----LSAFYDNIVESAKTQGYVTTLAGRRRLLPDIESKNSQLASQARRQAINTVVQGG 797

Query: 502 ACELVKKAWRAKHQ 515
           A +++K A  A H+
Sbjct: 798 AADIIKMAMLAAHK 811


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 180/446 (40%), Gaps = 92/446 (20%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D+ ++ V HN+ F+ + F ++ G  + +  + CT ++A+  G               E
Sbjct: 49  LNDKNIIKVFHNAKFD-VGFFQSKGYRVNN--YHCTLLMAQVLG--------------EE 91

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            L+     KAL  ++    +D            +  Q   +Y  +DVE TR L+ +L+ L
Sbjct: 92  KLSL----KALAKKYLDVDMDKSMQHSDNWQETEITQEHIDYAVKDVEHTRALYYKLLDL 147

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK----LDEDI-------VKLTD 229
              E +L     T+ +R  R    +V+     I  E  K    LD+D        +++ D
Sbjct: 148 L-VENNLL----TVYERERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKD 202

Query: 230 GIIRSSRQTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDL--ILNRLASS 285
            + R      + +  +  I   GI L   S+  L        + +L +    +  ++ + 
Sbjct: 203 LLNRKELNLNSPKQLVEAIVEYGIKLHSTSDDELAKYSDEHEVIKLIRKYRRLQAKIKTY 262

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           G  + K       + +DGR+R   +  G SR+GR S C     N P              
Sbjct: 263 GEKLKKF------IDNDGRIRAHWRLIG-SRSGRMS-C-----NNP-------------- 295

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     PL       R   +A  G KL+ +D + IE RVLA I+ ++  I  F NG
Sbjct: 296 ----------PLQAMPGNSREFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNG 345

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+++ T +  F  PID++SKE+R + K +   + Y              G+      +N
Sbjct: 346 IDLHLGTASLIFKKPIDEISKEERQVAKSLNFGIVY--------------GITAYGIQKN 391

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPE 491
           ++ +      E+AE + +   + YP+
Sbjct: 392 LRKSGVDTSLEEAEKYRIEFLNVYPK 417


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +A+  DGR+R T +    + TGR S      QNLP +              + G    
Sbjct: 596 LEKAIDEDGRIRSTFR-QNIAATGRLSSQDPNLQNLPIK-------------TDEGR--- 638

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R    A  GK L+ AD + IE R+LA ++G+   I AF  G DI+  T +
Sbjct: 639 --------LIRKAFRAEEGKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTAS 690

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F+T +DKV+K QR+  K +   + Y
Sbjct: 691 KVFHTDLDKVTKRQRSEAKAVNFGIIY 717


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 34/195 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
           + QLA D  L +L     ++ KL +     L E +  D GR+  +     AS TGR S  
Sbjct: 589 LEQLALDYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVAS-TGRLSSS 647

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+EE                         +R   +A +G++LV AD + 
Sbjct: 648 DPNLQNIPI--RTEE----------------------GRRIRQAFVAPSGRRLVAADYSQ 683

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   ++AFA G+DI+  T A+ F   +D+VS EQR   K +   L Y  
Sbjct: 684 IELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIY-- 741

Query: 444 GAKVFKTMASHCGLD 458
           G   F  +A   G++
Sbjct: 742 GMSAF-GLARQLGIE 755


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 146/356 (41%), Gaps = 75/356 (21%)

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLT------DGIIRSSRQTYALRMYLFLITGIDL 253
           RI+ + VL  Q ++AQ  K+L   + +L        G   +   T  L++ LF   GI  
Sbjct: 538 RIERNGVLIDQAILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKP 597

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNR--LASSGSAILK----------LNTLSEAVSS 301
              + G   S  S   + +LA D  L +  L   G + LK          +N LS     
Sbjct: 598 TKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPLS----- 651

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+  T      + TGR S      QN+P   R++E                       
Sbjct: 652 -GRVH-TSYHQAVTATGRLSSADPNLQNIPV--RNDE----------------------G 685

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   +A+ G ++V AD + IE R++A ++ +   + AFA GEDI+  T ++ F  P+
Sbjct: 686 RRIRQAFVAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVPL 745

Query: 422 DKVSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVK 467
           DKVS EQR   K +   L Y               G AK +  +       + ++ +N +
Sbjct: 746 DKVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTR 805

Query: 468 STSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512
             +  + + E  E   LW+ D     A++ K          + GTA +++K+A  A
Sbjct: 806 QLAASKGYVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 27/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           L+TL   V++DGR+  T     A+ TGR S      QN+P R +   EI           
Sbjct: 622 LDTLPTLVAADGRIHTTYH-QAATATGRLSSTDPNLQNIPVRTDLGREI----------- 669

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A+ G +LV AD + +E R+LA IA +   I+AF + EDI+ 
Sbjct: 670 --------------RRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHT 715

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T A+ F    ++V +EQR + K++   + Y
Sbjct: 716 RTAAEVFGVAKEQVDREQRRVAKMVNFGIAY 746


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 133/302 (44%), Gaps = 56/302 (18%)

Query: 156 WQLFGEYCKRDVEA-TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           +QL  ++     EA T+ELF  + IPL     D+ L        G  +D   +  L E  
Sbjct: 522 YQLAQQFKPELEEAKTQELFTDIEIPLLHVLADMEL-------EGINLDTKFLNSLAE-- 572

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN 269
                 LD DI KL   I   + + + +    ++   L   + LV   + T     S + 
Sbjct: 573 -----DLDNDIKKLEADIYEEAGEEFNIASPKQLGDILFDKLALVKKPKKTKTGQYSTAE 627

Query: 270 --ITQLAKD--LILNRLASSGSAILK---LNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
             ++ LAKD  +I N L+  G A LK   ++ L   V  S GR+  T      + TGR S
Sbjct: 628 DVLSYLAKDHKIIENVLSYRGLAKLKSTYVDALPAQVEESTGRVH-TDYMQTVAATGRLS 686

Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVA 379
                 QN+P R ER  +                         VR   +  N +  LV A
Sbjct: 687 SNNPNLQNIPIRTERGRQ-------------------------VRKAFVPRNKEYVLVAA 721

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ E   I+AF NGEDI+ +T +K FN P+++V++EQR+  K +   +
Sbjct: 722 DYSQIELRIIAALSEETTMIEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGI 781

Query: 440 GY 441
            Y
Sbjct: 782 IY 783


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 31/172 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G  +V AD + IE R++A I+G++  ++AFANGEDI+  T ++ F    + 
Sbjct: 702 IREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATASEIFGVDREA 761

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-----------------LQQFSQNV 466
           VS EQR   KV+   L Y  G   F  +AS+ G++                 + Q+ ++ 
Sbjct: 762 VSSEQRRYAKVINFGLIY--GMSAFG-LASNLGIEREAAKHYIDRYFMRYPGVAQYMEDT 818

Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507
           + T+  + + E      LW+ D         Q  E  A+   + GTA +L+K
Sbjct: 819 RQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPMQGTAADLIK 870


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 53/290 (18%)

Query: 166 DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           D   TR+LF  + +PL +   D+ +        G  +DLD + KL E        LD DI
Sbjct: 529 DEAKTRKLFNEIEMPLVEVLADMEI-------EGINLDLDFLKKLSE-------ALDRDI 574

Query: 225 VKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKDLI 278
            +L   I  ++ + + +    ++ + L   + LV   + T     S S   ++ LA +  
Sbjct: 575 KELEAKIYEAAGEEFKISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHE 634

Query: 279 LNRLASSGSAILKL-NTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP- 331
           + +       ++KL NT  +A+      S GR+  T      + TGR S      QN+P 
Sbjct: 635 IVQHVLDYRGLVKLQNTYVDALPGQVEKSSGRVH-TDYVQTIAATGRLSSNNPNLQNIPI 693

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R ER  ++                         ++ I  S+   L+ AD + IE R++A 
Sbjct: 694 RTERGRQVR------------------------KAFIPRSDDYVLLAADYSQIELRIIAA 729

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ E+  IKAF +GEDI+ +T ++ FN P+++V++EQR+  K +   + Y
Sbjct: 730 LSEEETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIY 779


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A I+G++  ++AFANGEDI+  T A+ F    D 
Sbjct: 700 IREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAAEIFGVERDA 759

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +AS+ G++
Sbjct: 760 VSSEQRRYAKVINFGLIY--GMSAFG-LASNLGIE 791


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 44/262 (16%)

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALR------MYLFLITGIDLVDMS----EGTL 261
           L+AQE K+L  ++ +L +    ++   + L         LF   G+ +V  +      T 
Sbjct: 576 LLAQESKELGVEVEQLVEEAHAAAGHPFNLSSPKQLAQILFAEQGLPVVKKTASGTPSTD 635

Query: 262 KSILSHSNITQLAKDLILN--RLASSGSAIL-KLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           + +LS   +      +IL   RL    S  L KL TL   +  DGR+  T      + TG
Sbjct: 636 EEVLSELALNYPLPKIILEHRRLTKLKSTYLDKLPTL---IDRDGRIHTTFG-QAVAVTG 691

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P         T+T +                  +R+   A  G  ++ 
Sbjct: 692 RLSSMDPNLQNIP---------TRTPEGRR---------------IRTAFTARRGWSVID 727

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + +E R++A ++ +   + AF+ GEDI+ +T A+ F+TP+D+V+ +QR + KV+   
Sbjct: 728 ADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRMAKVINFG 787

Query: 439 LGYQGGAKVFKTMASHCGLDLQ 460
           L Y  G   F  +A   GLD Q
Sbjct: 788 LIY--GMSAFG-LAQQMGLDRQ 806


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 124/315 (39%), Gaps = 57/315 (18%)

Query: 162  YCKRDVEATRELF---------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            Y  RD      L+         +RL  ++D E    L    +   G ++DLD   KL+ L
Sbjct: 1193 YASRDTAVLLPLYFILQEKLKAERLDMIADIENKCVLAVCQMEQNGIKVDLD---KLKSL 1249

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID------------LVDMSEGT 260
             A   K+ +  +  L D +  SS   +       ++  +             + D SE T
Sbjct: 1250 QAALDKENETAMKHLGDTLGVSSNPNFNYNSQRQILQALQQQKVMDKTRRGLIQDTSERT 1309

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L     H  I  L +    N+  ++ +  +     +   S+ GR+   +   GA  +GR+
Sbjct: 1310 LSRNTYHPAIQALREYRKTNKAVTAFTEKIP----NHIDSATGRIYPNINQIGA-ESGRF 1364

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
            S      Q +PR  R                             R C IA  G KLV+AD
Sbjct: 1365 SCDNPNLQQIPRDSR----------------------------FRECFIADKGNKLVIAD 1396

Query: 381  LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
             + IE R+ A IA +   I+A+ +GED++  T +   N PI +V+KE+R + K +   L 
Sbjct: 1397 FSQIELRIAADIAEDRRMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLI 1456

Query: 441  YQGGAKVFKTMASHC 455
            +      F+  A  C
Sbjct: 1457 FGMSLAGFRNYAESC 1471


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L +AV++DGR+  T     A+ TGR 
Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  AS  +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------ASRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L +AV++DGR+  T     A+ TGR 
Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  AS  +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------ASRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 133/303 (43%), Gaps = 58/303 (19%)

Query: 156 WQLFGEYCKRDVEA-TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           +QL   +     EA T ELF  + IPL     D+ L        G  +D + +  L E  
Sbjct: 521 YQLAQHFRPELAEASTEELFNTIEIPLLHVLADMEL-------EGINLDKEFLGSLSE-- 571

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN 269
                 L+ DI +L   I + + Q + +    ++   L   + LVD  + T     S + 
Sbjct: 572 -----DLNNDIKELQSKIYKEADQEFNIASPKQLGEILFDKLKLVDKPKKTKTGQYSTAE 626

Query: 270 --ITQLAKD--LILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRW 320
             ++ LAKD  +I N L   G + LK +T  +A+        GR+  T      + TGR 
Sbjct: 627 DVLSYLAKDHEIIRNVLEYRGLSKLK-STYVDALPLQVEERTGRVH-TDYMQTVAATGRL 684

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378
           S      QN+P R ER  +                         VR   +  +    L+ 
Sbjct: 685 SSNNPNLQNIPIRTERGRQ-------------------------VRKAFVPRDEDYTLLA 719

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ ED  I+AF NGEDI+ +T +K F+ P+D+V++EQR+  K +   
Sbjct: 720 ADYSQIELRIIAALSEEDTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFG 779

Query: 439 LGY 441
           + Y
Sbjct: 780 IIY 782


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ ++  +KAFA GEDI+  T A+ F  P+DK
Sbjct: 694 IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVFGLPLDK 753

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 754 VTNEQRRSAKAINFGLIY 771


>gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L K GV+ YAE     + L  Y+ D   VK+ D  +   +P +++  L
Sbjct: 23  LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82

Query: 62  RDETVMCVAHNSLFERILFKKTLGID-----IPSKRWICTSVLARTNGLPSSLKNACLAL 116
            DE V   A N+ FERI   + LG +     +P+  W C+ V +   GLP SL+     L
Sbjct: 83  EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPAS-WKCSMVWSAYMGLPLSLEGVGAVL 141

Query: 117 NFSEHLTKMEEGKALI 132
              +   K+ EGK LI
Sbjct: 142 GLEKQ--KLTEGKDLI 155


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 28/174 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V  DGR+  T +    +RTGR S      QN+P                     + 
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIP---------------------VR 583

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
            PLG     +R    A +G  LV AD + IE RVLA I+G++   KAF +G DI+  T +
Sbjct: 584 TPLGRE---MRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + FN PI+ V+ + R+  K +   + Y  GA    +++   G+ + + S+ ++S
Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA---FSLSKDIGVSVPKASEYIRS 691


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 28/174 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V  DGR+  T +    +RTGR S      QN+P                     + 
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIP---------------------VR 583

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
            PLG     +R    A +G  LV AD + IE RVLA I+G++   KAF +G DI+  T +
Sbjct: 584 TPLGRE---MRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + FN PI+ V+ + R+  K +   + Y  GA    +++   G+ + + S+ ++S
Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA---FSLSKDIGVSVPKASEYIRS 691


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RSC + ++G KL++AD + IE R+ A IA +   I A+ N +D++  T A     P+D+V
Sbjct: 425 RSCFVPASGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEV 484

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDL-----QQFSQN-VKSTSTFEDWEQ 477
           +K++R +GK +   L Y  GA   +  A ++ G+ +     Q+F  N  K       W Q
Sbjct: 485 TKQERQLGKAVNFGLIYGMGATKLRIYAETNYGVKMSIEEAQRFRDNFFKGYPGLHQWHQ 544


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  ++AF+ GEDI+  T ++ FN    +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VSSDQRRVAKVINFGLIY--GMSAF-GLASNLGI 764


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   IA +    L+ AD + IE R++A + GE+  IKAF N EDI+ +T AK FN P+
Sbjct: 709 LIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPL 768

Query: 422 DKVSKEQRAIGKVMELALGY 441
           D+V+KEQR+  K +   + Y
Sbjct: 769 DEVTKEQRSHAKTVNFGIIY 788


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  ++AF+ GEDI+  T ++ FN    +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VSSDQRRVAKVINFGLIY--GMSAF-GLASNLGI 764


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A +A ++  +KAFA G+DI+ +T ++ F  P+D+
Sbjct: 712 IRQAFIARKGYKIVAADYSQIELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDE 771

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 772 VTGEQRRNAKAINFGLIY 789


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L +AV++DGR+  T     A+ TGR 
Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  A   +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 27/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           L+TL   V+ DGR+  T     A+ TGR S      QN+P R E   EI           
Sbjct: 613 LDTLPGLVAKDGRIHTTYH-QAATATGRLSSSDPNLQNIPVRTELGREI----------- 660

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A  G +LV AD + +E R+LA IA +   + AF + EDI+ 
Sbjct: 661 --------------RRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHS 706

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T A+ F    DKV ++QR + K +   + Y
Sbjct: 707 RTAAEIFGVTPDKVDRDQRRVAKTVNFGIAY 737


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G ++V AD + IE R++A ++G++  +KAFA GEDI+  T A+ F+  +D 
Sbjct: 690 IREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFAAGEDIHRATAAEVFSVALDA 749

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 750 VSSEQRRYAKVINFGLIY 767


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L +AV++DGR+  T     A+ TGR 
Sbjct: 599 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 642

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  A   +R   +  +G  +L+ A
Sbjct: 643 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 678

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 679 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 738

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 739 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 765


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 28/174 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V  DGR+  T +    +RTGR S      QN+P                     + 
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIP---------------------VR 583

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
            PLG     +R    A +G  LV AD + IE RVLA I+G++   KAF +G DI+  T +
Sbjct: 584 TPLGRE---MRRFFTAKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + FN PI+ V+ + R+  K +   + Y  GA    +++   G+ + + S+ ++S
Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA---FSLSKDIGVSVPKASEYIRS 691


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 27/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           L+TL   V+ DGR+  T     A+ TGR S      QN+P R E   EI           
Sbjct: 566 LDTLPGLVAKDGRIHTTYH-QAATATGRLSSSDPNLQNIPVRTELGREI----------- 613

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A  G +LV AD + +E R+LA IA +   + AF + EDI+ 
Sbjct: 614 --------------RRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHS 659

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T A+ F    DKV ++QR + K +   + Y
Sbjct: 660 RTAAEIFGVTPDKVDRDQRRVAKTVNFGIAY 690


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L +AV++DGR+  T     A+ TGR 
Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  A   +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L +AV++DGR+  T     A+ TGR 
Sbjct: 583 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 626

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  A   +R   +  +G  +L+ A
Sbjct: 627 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 662

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 663 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 722

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 723 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 749


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 132/308 (42%), Gaps = 62/308 (20%)

Query: 169 ATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           A R+L+ R+ +PL D   D+ L        G  +D + + +L +  AQ   +L E I   
Sbjct: 524 ALRDLYYRVELPLIDVLTDMEL-------TGILLDHEYLRELGKRFAQRIAELTEQIYAK 576

Query: 228 TDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKS--------ILSH-SNITQLAKD 276
             G   I S +Q   L   LF   GI+  D     LKS        +L   S +  +A D
Sbjct: 577 AGGPFNINSGQQ---LNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELSQLYPIAAD 633

Query: 277 LI----LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           ++    L +L S+      ++ L + V+   GR+  +    GA+ TGR S      QN+P
Sbjct: 634 ILAYRQLTKLKST-----YIDALPQLVNPRTGRIHTSYNQIGAA-TGRLSSNNPNLQNIP 687

Query: 332 -RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            R E   EI                         R   +A+ G + V AD + IE RVLA
Sbjct: 688 VRTEEGREI-------------------------RRAFVAAPGHRFVAADYSQIELRVLA 722

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I+G++  I AF  G DI+  T ++ F    D+V K QR + K +   + Y  G   F  
Sbjct: 723 HISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIY--GISAFG- 779

Query: 451 MASHCGLD 458
           +A   G++
Sbjct: 780 LAQRLGIE 787


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 39/233 (16%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +L+ +D + IE R++A ++G+   +KAFA G+DI+  T A+ FN P+++
Sbjct: 700 IRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEE 759

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTM--ASHCGLD--LQQFSQN 465
           V+ EQR   K +   L Y              +G A+ +  +  A + G+   ++   +N
Sbjct: 760 VTSEQRRSAKAVNFGLIYGMSAFGLAKQLNISRGLAQEYINLYFARYPGVANYMESTKEN 819

Query: 466 VKSTSTFEDWEQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVKKAWRAKHQ 515
            K T   E         L++ D         QY E  A+   + GTA +++K A      
Sbjct: 820 AKQTGYVETL---MGRRLYLPDINAKNGQLRQYAERTAINAPMQGTAADIIKTAMVK--- 873

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             +Q W D T    C ++    +    V  V    M + ++++  ++ ++ +L
Sbjct: 874 --MQQWLDQT---PCDIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAALKL 921


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G  +V AD + IE R++A I+G++  ++AFANGEDI+  T  + F    + 
Sbjct: 695 IREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 754

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +AS+ G++
Sbjct: 755 VSSEQRRYAKVINFGLIY--GMSAFG-LASNLGIE 786


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A +A +   +KAFA G+DI+ +T ++ F  P+D+
Sbjct: 712 IRQAFIARKGYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDE 771

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 772 VTGEQRRNAKAINFGLIY 789


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 49/259 (18%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDL 253
           G  +D D +  L E       +L+ DI  L   I  ++ + + +    ++ + L   + L
Sbjct: 562 GINLDKDFLNSLSE-------ELNTDIANLEKSIYEAAGEEFNIASPKQLGVILFEKMKL 614

Query: 254 VDMSEGTLKSILSHSN--ITQLAKD--LILNRLASSGSAILKLNTLSEAV-----SSDGR 304
           VD  + T     S +   ++ LAKD  +I   L   G + LK +T  +A+      S GR
Sbjct: 615 VDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFRGLSKLK-STYVDALPLQVDESTGR 673

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDC 363
           +  T      + TGR S      QN+P R ER  +                         
Sbjct: 674 VH-TDYMQTVAATGRLSSNNPNLQNIPIRTERGRQ------------------------- 707

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           VR   +  +    L+ AD + IE R++A ++ E+  I+AF NGEDI+ +T +K FN PI 
Sbjct: 708 VRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKVFNVPIT 767

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V++EQR+  K +   + Y
Sbjct: 768 EVTREQRSNAKTVNFGIIY 786


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           G Y   D + T  L  +L P         L D E  L  +   +   G  ID  ++ K  
Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + ++ K L+++ ++L      + S +Q   L+  LF    + +V  +  T +   + S
Sbjct: 524 SRLKEQMKSLEQEAIQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579

Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA D     +IL   + S      ++ L + ++       T      + TGR S  
Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   RSEE                         +R+  IA  G  ++ AD + 
Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ +D  ++AFANG DI+  T ++ F T +D VSKEQR   K +   L Y  
Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIY-- 733

Query: 444 GAKVFKTMASHCGLDLQ 460
           G   F  +A   G++ Q
Sbjct: 734 GMSAF-GLAKQIGVERQ 749


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AF+NGEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHQIVSADYSQIELRIMAHISGDASLLRAFSNGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VTADQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  ++AF+ GEDI+  T A+ F+    +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEGEDIHRATAAEIFSVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  ++AF+ GEDI+  T A+ F+    +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  ++AF+ GEDI+  T A+ F+    +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           G Y   D + T  L  +L P         L D E  L  +   +   G  ID  ++ K  
Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + ++ K L+++ V+L      + S +Q   L+  LF    + +V  +  T +   + S
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579

Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA D     +IL   + S      ++ L + ++       T      + TGR S  
Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   RSEE                         +R+  IA  G  ++ AD + 
Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ +D  ++AFANG DI+  T ++ F T +D VSKEQR   K +   L Y  
Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIY-- 733

Query: 444 GAKVFKTMASHCGLDLQ 460
           G   F  +A   G++ Q
Sbjct: 734 GMSAF-GLAKQIGVERQ 749


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 40/236 (16%)

Query: 220 LDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQL 273
           L EDI KL   I   + + + L    ++ L L   + LVD  + T     S +   ++ L
Sbjct: 569 LAEDIQKLEAAIFEVAGENFNLASPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYL 628

Query: 274 AKDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQP 327
           AKD  +        ++ KL NT  +A+ ++     GR+  T+     + TGR S      
Sbjct: 629 AKDHPIISDILDWRSLQKLQNTYVDALPNEINPKTGRVH-TIYNQAVAATGRLSSNNPNL 687

Query: 328 QNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIE 385
           QN+P R ER ++                         VR   I  +    L+ AD + IE
Sbjct: 688 QNIPIRTERGQQ-------------------------VRKAFIPRDENHVLMAADYSQIE 722

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            R++A ++G++  + AF N EDI+  T +K FN P+++V++EQR   K +   + Y
Sbjct: 723 LRIIAALSGDEGMLSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIY 778


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 144/350 (41%), Gaps = 63/350 (18%)

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLT------DGIIRSSRQTYALRMYLFLITGIDL 253
           RI+ + VL  Q ++AQ  K+L   + +L        G   +   T  L++ LF   GI  
Sbjct: 538 RIERNGVLIDQSILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKP 597

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRG 307
              + G   S  S   + +LA D  L ++      + KL +T ++ +        GR+  
Sbjct: 598 TKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPISGRVH- 655

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T      + TGR S      QN+P   R++E                         +R  
Sbjct: 656 TSYHQAVTATGRLSSADPNLQNIPV--RNDE----------------------GRRIRQA 691

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A+ G ++V AD + IE R++A ++ +   + AFA GEDI+  T ++ F   +DKVS E
Sbjct: 692 FVAAKGHRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALDKVSGE 751

Query: 428 QRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           QR   K +   L Y               G AK +  +       + ++ +N +  +   
Sbjct: 752 QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASN 811

Query: 474 DW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512
            + E  E   LW+ D     A++ K          + GTA +++K+A  A
Sbjct: 812 GYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ +   +KAFA G+DI+  T A+ F  P+DK
Sbjct: 693 IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGVPLDK 752

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 753 VASEQRRSAKAINFGLIY 770


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++ AD + IE R++A ++ +   I AFA G+DI+ +T A+ F  P+++
Sbjct: 695 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQ 754

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           V+ EQR   K +   L Y   + VF         D Q++
Sbjct: 755 VTSEQRRNAKAINFGLIYGMSSFVFPARLGISRADAQRY 793


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 30/183 (16%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  IT++ +   L +L S+      ++ L   VS+DGRLR T    GA+ TGR +     
Sbjct: 487 HPIITEILRYRELQKLVST-----YIDNLPPLVSADGRLRTTFVQTGAA-TGRMASQNPN 540

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P   R+EE                      S  +R   +AS G  +V  D + IE 
Sbjct: 541 LQNIPI--RTEE----------------------SKAIRQAFVASPGYSIVSIDYSQIEL 576

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+ A ++ ++  ++ FA GED++     + F    ++V++E R   KV+   + Y  G  
Sbjct: 577 RIAAILSRDEKMVEIFARGEDVHTGVAVRVFGVTPEEVTREMRRKAKVINFGILYGMGVN 636

Query: 447 VFK 449
             +
Sbjct: 637 ALR 639


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AFA+GEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAHGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +   G K V AD + IE R++A ++G+   + AFA+G+DI+  T A+ F  P+D+
Sbjct: 690 VRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFGVPLDE 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTTEQRRSAKAINFGLIY 767


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  T    GA+ TGR S      QN+P       + TQ  + + RG            
Sbjct: 667 GRVHTTYNQVGAA-TGRLSSNDPNLQNIP-------VRTQEGREIRRG------------ 706

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
                 +A+ G + + AD + IE RVLA+I  +   ++AF  G+DI+  T A+ F   ID
Sbjct: 707 -----FVAAPGHRFIAADYSQIELRVLAYITKDPNLVRAFQEGQDIHAATAAQLFGVAID 761

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V KEQR I K +   + Y
Sbjct: 762 QVDKEQRRIAKTVVFGVIY 780


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 31/172 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AFA GEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ +QR I KV+   L Y  G   F  +AS+ G+                  + Q+ ++ 
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFTRYPGVAQYMEDT 794

Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507
           ++T+  + + E      LW+ +         Q  E  A+   + GTA +L+K
Sbjct: 795 RTTAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 846


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 40/246 (16%)

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSIL 265
           QE +    + L+ DI  L   I   + + + +    ++   L   + LVD  + T     
Sbjct: 567 QEFLGSLSEALNNDIASLEKSIYEEAGEEFNIGSPKQLGEILFDKLKLVDKPKKTRTGQY 626

Query: 266 SHSN--ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSD-GRLRGTLQFYGASRT 317
           S +   ++ LA D  ++ + L   G + LK   ++ L   V++  GR+  T      + T
Sbjct: 627 STAEDVLSYLAPDHEIVQHVLDYRGLSKLKSTYVDALPAQVNAKTGRVH-TDYMQTVAAT 685

Query: 318 GRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           GR S      QN+P R ER  +                         VR   +  N    
Sbjct: 686 GRLSSNNPNLQNIPIRTERGRQ-------------------------VRKAFVPRNEDYV 720

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ E+  +KAF  GEDI+ +T AK FN PID+V++EQR+  K +
Sbjct: 721 LLAADYSQIELRIIAALSQEETMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTV 780

Query: 436 ELALGY 441
              + Y
Sbjct: 781 NFGIIY 786


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L  A+  DGR+R T +   AS TGR S      QNLP       I T   +A        
Sbjct: 594 LENAIDEDGRIRSTFRQNIAS-TGRLSSQEPNLQNLP-------IKTDEGRA-------- 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R    A  GK L+ AD + IE R+LA +A +     AF  G DI+  T +
Sbjct: 638 ---------IRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNRGIDIHTQTAS 688

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+TP+D+V+K QR+  K +   + Y
Sbjct: 689 EVFHTPLDEVTKLQRSEAKAVNFGIIY 715


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 54/301 (17%)

Query: 156 WQLFGEYCKRDVEA-TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           +QL   + K   EA TR+LF  + IPL +   D+ L        G ++D + +  L E +
Sbjct: 519 FQLKNLFEKELEEAETRKLFNEIEIPLVEVLADMEL-------EGIKLDEEYLKSLSEAL 571

Query: 214 AQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN-- 269
           A + K L+  I +    + +I S +Q     + + L   ++L    + T     S S   
Sbjct: 572 ASDIKDLETKIYEAAGEEFLISSPKQ-----LGIILFEKMELSKKPKKTKTGQYSTSEDV 626

Query: 270 ITQLAK--DLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSG 322
           ++ LA+  D++ + L   G   L+ NT  +A+ +      GR+  T      + TGR S 
Sbjct: 627 LSSLAEENDIVQHVLDYRGLVKLQ-NTYVDALPNQVERTTGRVH-TDYVQTTAATGRLSS 684

Query: 323 CVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                QN+P R ER ++                         VR   +  +    L+ AD
Sbjct: 685 NNPNLQNIPIRTERGKQ-------------------------VRKAFVPRDENYVLLAAD 719

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ E+  I+AF +GEDI+ +T AK FN P+++V++EQR+  K +   + 
Sbjct: 720 YSQIELRIIAALSNEENMIQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGII 779

Query: 441 Y 441
           Y
Sbjct: 780 Y 780


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 25/176 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +ASNG  L+ AD + IE R++A ++G++  +KAFA GEDI+  T ++ F+  ++ 
Sbjct: 655 IREAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIFDIALED 714

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKT---MASHCGLD-----------LQQFSQNVKST 469
           VS +QR   K +   L Y   A        +  H   D           ++Q+  N +  
Sbjct: 715 VSSDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQAADYMQTYFDRYPGVRQYMDNTREQ 774

Query: 470 STFEDW-EQAESHHLW---------MQDQYPE-FAVKDKLIGTACELVKKAWRAKH 514
           +  + + E      L+         M+ QY E  A+   + G+A +++K+A  A H
Sbjct: 775 AKEQGYVETIFGRRLYLPEINSSNGMRRQYAERTAINAPMQGSAADIIKRAMIAIH 830


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R++A ++G++  +KAF+ G D++  T A+ FN   D+
Sbjct: 671 IRQAFIAPKGCKLISADYSQIELRIMAHLSGDEGLLKAFSEGLDVHQATAAEVFNVAFDE 730

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 731 VSSEQRRKAKAINFGLIY 748


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F T +DK
Sbjct: 690 IRQAFIAPQGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDK 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRSAKAINFGLIY 767


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           G Y   D + T  L  +L P         L D E  L  +   +   G  ID  ++ K  
Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHG 523

Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + ++ K L+++ V+L      + S +Q   L+  LF    + +V  +  T +   + S
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579

Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA D     +IL   + S      ++ L + ++       T      + TGR S  
Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   RSEE                         +R+  IA  G  ++ AD + 
Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ +D  ++AFANG DI+  T ++ F T ++ VSKEQR   K +   L Y  
Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIY-- 733

Query: 444 GAKVFKTMASHCGLDLQ 460
           G   F  +A   G++ Q
Sbjct: 734 GMSAF-GLAKQIGVERQ 749


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F T +DK
Sbjct: 690 IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDK 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRSAKAINFGLIY 767


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AFA GEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           G Y   D + T  L  +L P         L D E  L  +   +   G  ID  ++ K  
Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + ++ K L+++ V+L      + S +Q   L+  LF    + +V  +  T +   + S
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579

Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA D     +IL   + S      ++ L + ++       T      + TGR S  
Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   RSEE                         +R+  IA  G  ++ AD + 
Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ +D  ++AFANG DI+  T ++ F T ++ VSKEQR   K +   L Y  
Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIY-- 733

Query: 444 GAKVFKTMASHCGLDLQ 460
           G   F  +A   G++ Q
Sbjct: 734 GMSAF-GLAKQIGVERQ 749


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AFA GEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 32/308 (10%)

Query: 162 YCKRDVEATRELFKRLIPLSDGE---RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           Y   D + T E+ + L PL       R ++ L+   ++  +R++ + VL    L+AQ+  
Sbjct: 501 YACEDSDQTLEVHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSH 560

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            L + I++L       + Q + L          F   G+ +V  +    +S  +   + +
Sbjct: 561 ALGQRILRLETEAYEIAGQPFNLNSPKQLGEIFFDKLGMPVVRKTTTGARST-NEEVLEK 619

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LA D  L       + +L+  +LS+  S+     G L      RTGR      Q   +  
Sbjct: 620 LAADYPLP------ARLLEHRSLSKLKSTYTDKLGLLAL---PRTGRVHTHYAQAVAVTG 670

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +  S +   Q I        +  P G     +R   +A  G+ +  AD + IE R++A I
Sbjct: 671 RLSSSDPNLQNI-------PVRTPEG---RRIREAFVAPPGRVIASADYSQIELRIMAHI 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F  P+ +VS EQR   KV+   L Y  G   F  +A
Sbjct: 721 SGDPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIY--GMSSFG-LA 777

Query: 453 SHCGLDLQ 460
            + GLD Q
Sbjct: 778 KNLGLDRQ 785


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 31/182 (17%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSS-----DGRLRGTLQFYGASRTGR 319
           S   +++LA++  L ++A     I KL  T +E +       DGR+  T +    + TGR
Sbjct: 633 SEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGR 691

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P   R+EE                         VR   I+++G KL+ A
Sbjct: 692 LSSTNPNLQNIPI--RTEE----------------------GRKVREAFISASGCKLISA 727

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   ++AF N EDI+  T A+ F    DKV+   R I KV+   L
Sbjct: 728 DYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGL 787

Query: 440 GY 441
            Y
Sbjct: 788 MY 789


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AFA GEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           G Y   D + T  L  +L P         L D E  L  +   +   G  ID  ++ K  
Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + ++ K L+++ V+L      + S +Q   L+  LF    + +V  +  T +   + S
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579

Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA D     +IL   + S      ++ L + ++       T      + TGR S  
Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   RSEE                         +R+  IA  G  ++ AD + 
Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ +D  ++AFANG DI+  T ++ F T ++ VSKEQR   K +   L Y  
Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIY-- 733

Query: 444 GAKVFKTMASHCGLDLQ 460
           G   F  +A   G++ Q
Sbjct: 734 GMSAF-GLAKQIGVERQ 749


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G +++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F+ P+++
Sbjct: 690 IRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQ 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRSAKAINFGLIY 767


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 31/182 (17%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSS-----DGRLRGTLQFYGASRTGR 319
           S   +++LA++  L ++A     I KL  T +E +       DGR+  T +    + TGR
Sbjct: 574 SEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGR 632

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P   R+EE                         VR   I+++G KL+ A
Sbjct: 633 LSSTNPNLQNIPI--RTEE----------------------GRKVREAFISASGCKLISA 668

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   ++AF N EDI+  T A+ F    DKV+   R I KV+   L
Sbjct: 669 DYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGL 728

Query: 440 GY 441
            Y
Sbjct: 729 MY 730


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  ++AF  GEDI+  T ++ F+    +
Sbjct: 676 IREAFIAPPGHKLVSADYSQIELRIMAHISGDEALLRAFKQGEDIHRATASEVFSVTPLE 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 736 VSNDQRRIAKVINFGLIY--GMSSFG-LASNLGI 766


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 32/161 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344
           KLN+     L + ++ DGR+         +RTGR S      QN+P R E   E+     
Sbjct: 561 KLNSTYCEGLLKVIADDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRTELGREM----- 614

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               R    A +G  LV AD + IE RVLA I+G+   IKAF +
Sbjct: 615 --------------------RKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKD 654

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            EDI+  T ++ FN P+D V+   R+  K +   + Y  GA
Sbjct: 655 NEDIHAITASQVFNMPLDMVTPIMRSRAKAVNFGIVYGIGA 695


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  ++AF+ GEDI+  T A+ F+    +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +A++ G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LAANLGI 764


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F   +DK
Sbjct: 690 IRQAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDK 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRSAKAINFGLIY 767


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R  +++S G  LV +D + IE RVLA ++ + + I AFA+G DI+  T ++ F+TP D
Sbjct: 645 LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYD 704

Query: 423 KVSKEQRAIGKVMELALGY 441
           +VS E R++ K +   + Y
Sbjct: 705 EVSDELRSMAKAVNFGIVY 723


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 38/257 (14%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQT-----YALRMYLFLITG 250
           G ++D + +    E + ++  ++ ED+ +   G   IRS++Q        L++ +   T 
Sbjct: 487 GVKLDAEALADFLEEVQKDLDRITEDVYREAQGPFNIRSAQQLGDVLFNRLKLPVSGKTR 546

Query: 251 IDLVDMSEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                 S+  L+ +  H  +   L +   L +L S+      L  L   +  DGR+R T 
Sbjct: 547 GGQASTSQDVLEKLSGHHPVVDALLEFRKLEKLRST-----YLEPLPRLMGGDGRIRTTF 601

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A+ TGR S      QN+P +            AL R              +R+C  
Sbjct: 602 NQL-ATATGRLSSSNPNLQNIPVR-----------GALGR-------------RMRACFT 636

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  GKKL+ AD + IE RVLA ++ ++  + AF  G DI+  T +  F+ P  +++ +QR
Sbjct: 637 APEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQR 696

Query: 430 AIGKVMELALGYQGGAK 446
              K +   L Y  G +
Sbjct: 697 RNAKTINFGLIYGMGPQ 713


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 25/155 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L   +  +GR+  T     A+ TGR S      QN+P                 RG+
Sbjct: 631 LDPLPRLMDGNGRIHTTFN-QKATATGRLSSSNPNLQNIP----------------VRGD 673

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                LG     +R+C IA+ G  LV AD + +E RVLA ++ +   ++AF NGEDI+  
Sbjct: 674 -----LG---KRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHAR 725

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           T A  ++   D+VS +QR   K +   L Y  GA+
Sbjct: 726 TAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGAQ 760


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 33/179 (18%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGC 323
           + +LA+   L RL     ++ KL     + L + V  +DGR+  T    GA+ TGR S  
Sbjct: 583 LEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSS 641

Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               QN+P R E S  I                         R   +A  G +L+ AD +
Sbjct: 642 DPNLQNIPVRTELSRRI-------------------------RQAFVAPAGARLLSADYS 676

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R+LA  + +   ++AF + ED++  T A+ F  P ++V+ +QR I KV+   + Y
Sbjct: 677 QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAY 735


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 20/165 (12%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+C  A  G+KL++AD + IE RV A I+G+   I A+  GED+++ T +   + PI+++
Sbjct: 350 RACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIEEI 409

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASH---CGLDLQQFSQ----NVKSTSTFEDWEQ 477
           S ++R   K +   L +  GA   +  A       + L+Q ++      K+ +    W Q
Sbjct: 410 SPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQ 469

Query: 478 AESHHLWMQDQ--------YPEFA-----VKDKLIGTACELVKKA 509
           +   HL  + +        Y E A         + GTA ++VKKA
Sbjct: 470 SIKAHLPKEGRTLAGRKFVYYEKAGLPGYYNTPVQGTAADIVKKA 514


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G +LV AD + IE R++A ++G+   + AFA G DI+  T A+ F   +DK
Sbjct: 683 IRQAFVARPGYRLVAADYSQIELRIMAHLSGDKGLLDAFAQGRDIHAATAAEVFGVALDK 742

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 743 VSGEQRRSAKAINFGLIY 760


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R  +++S G  LV +D + IE RVLA ++ + + I AFA+G DI+  T ++ F+TP D
Sbjct: 645 LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYD 704

Query: 423 KVSKEQRAIGKVMELALGY 441
           +VS E R++ K +   + Y
Sbjct: 705 EVSDELRSMAKAVNFGIVY 723


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           C+R   IA  G K++ AD + IE R++A ++ ++  I AF  G+DI+ +T A+ F  P++
Sbjct: 713 CIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLN 772

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ EQR   K +   L Y
Sbjct: 773 EVTSEQRRSAKAINFGLIY 791


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  +++F+ GEDI+  T A+ F+    +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G K+V AD + IE R++A I+G++  ++AF+ GEDI+  T A+ F     +
Sbjct: 678 IREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VSTDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
 gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
          Length = 907

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  LV AD + IE R++A ++ +   + AFAN  DI+  T A+ F  P+D 
Sbjct: 668 IREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEVFGVPLDA 727

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR I KV+   L Y  G   F  +AS   L+
Sbjct: 728 VSAEQRRIAKVINFGLIY--GMSAFG-LASQLNLE 759


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A I+ ++  ++AFANGEDI+  T A+ F     +
Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFANGEDIHRATAAEVFGVTPLE 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           C+R   IA  G K++ AD + IE R++A ++ ++  I AF  G+DI+ +T A+ F  P++
Sbjct: 713 CIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLN 772

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ EQR   K +   L Y
Sbjct: 773 EVTSEQRRSAKAINFGLIY 791


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 30/178 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           +++L + V +DGR+R   +    +RTGR S      QN+P R+E            + R 
Sbjct: 570 VDSLLKEVEADGRVRSVFK-QTETRTGRISSTEPNMQNIPVRKE------------IGRN 616

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +A +G   + AD + IE RVLA + G++   K FA+G DI+ 
Sbjct: 617 -------------MRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHT 663

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            T ++ F  P D V  E R+  K +   + Y  GA    +++   G+ +++  Q +K+
Sbjct: 664 MTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGA---FSLSKDIGVSVKEAKQYIKN 718


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A I+ +   +KAFA+GED++  T ++ F  PI +
Sbjct: 738 IREAFIAPPGHQMMSADYSQIELRIMAHISQDAGLLKAFADGEDVHRATASEVFGVPIAE 797

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   KV+   L Y  G   F  +A++ G++
Sbjct: 798 VNSEQRRYAKVINFGLIY--GMSAFG-LAANLGIE 829


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A ++G+   +KAF  GEDI+  T ++ F   +D 
Sbjct: 628 IRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGLLKAFEKGEDIHKATASEVFGVSLDD 687

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 688 VSSDQRRSAKAINFGLIY 705


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 23/164 (14%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RSC + + G KL++AD + IE R+ A IA +   I A+ N +D++  T A      ID+V
Sbjct: 425 RSCFVPAPGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEV 484

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           +K++R +GK +   L Y  GA   +  A ++ G+ +  F +  +    F  ++     H 
Sbjct: 485 TKQERQLGKAVNFGLIYGMGATKLRIYAETNYGVSM-TFDEAQRFRDNF--FKGYPGLHQ 541

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKH----QGVLQLWKD 523
           W QD             TAC+L  +  + K      G L+ WKD
Sbjct: 542 WHQD-------------TACKL--RTTKVKDIRTLSGRLRRWKD 570


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 30/160 (18%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     L + ++ DGR+    +    +RTGR S      QN+P   R+E        
Sbjct: 552 KLNSTYVVGLLDKIADDGRIHTWFR-QTETRTGRISSTEPNMQNIPV--RTE-------- 600

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                      LG     +R   +A  G+KLV AD + IE RV+A + G+   I+AF +G
Sbjct: 601 -----------LGAQ---MRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFNSG 646

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           EDI+ +T A+ F+ P   V+ E R+  K +   + Y  GA
Sbjct: 647 EDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGA 686


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A +A ++  I AFANG+DI+  T A+ F   + +
Sbjct: 724 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAE 783

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 784 VTSEQRRSAKAINFGLIY 801


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L  +V++DGR+  T     A+ TGR 
Sbjct: 596 LQHLLAHRDVTRLK---------------VTVDGLLNSVAADGRIHTTFNQTIAA-TGRL 639

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P       I T      + G  I D          + ++ +   +L+ AD
Sbjct: 640 SSTEPNLQNIP-------IRT------DAGRQIRD----------AFVVGAGYSELMTAD 676

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L 
Sbjct: 677 YSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLA 736

Query: 441 Y 441
           Y
Sbjct: 737 Y 737


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +AV+SDGR+  T     A+ TGR S      QN+P   R+E                 
Sbjct: 632 LLKAVASDGRIHSTFNQTVAA-TGRLSSTDPNLQNIPV--RTE----------------- 671

Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                A   +R   +A  G + L+ AD + IE R++A ++ ++  I+AF  GED++    
Sbjct: 672 -----AGRQIRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVG 726

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AKAF  PID+V+ + R   K M   L Y
Sbjct: 727 AKAFGVPIDEVTPDMRRRVKAMSYGLAY 754


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 681 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 741 VTSEQRRSAKAINFGLIY 758


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +   G K V AD + IE R++A ++G+   + AFA+G+DI+  T ++ F  P+D+
Sbjct: 690 VRQAFVPRKGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDE 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTTEQRRSAKAINFGLIY 767


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ ++  + AFA GEDI+  T A+ F  P D+
Sbjct: 671 IREAFIAPPGASIISADYSQIELRIMAHLSQDEGLLSAFAKGEDIHRATAAEIFGVPRDE 730

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 731 VSSEQRRYAKVINFGLIY 748


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
 gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
          Length = 66

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
           L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF
Sbjct: 3   LTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAF 46


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++LS  V+SDGR+  T     A+ TGR +      QN+P +                  
Sbjct: 620 VDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIPARS----------------- 661

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
             AD +      +R   +A  G + L+ AD + IE R++A ++G++  I+AF +GED++ 
Sbjct: 662 --ADGM-----RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHR 714

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T  +  F TP+ +VS E+R+  K     L Y
Sbjct: 715 TMASMVFGTPVAEVSAEERSRIKATSYGLAY 745


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A I+ ++  +KAFA GEDI+  T A+    P+++
Sbjct: 677 IREAFIAPAGYRIISADYSQIELRIMAHISQDEGLLKAFAAGEDIHSATAAEILGIPLNQ 736

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V +EQR   KV+   L Y  G   F  +A+  G++
Sbjct: 737 VDQEQRRHAKVINFGLIY--GMSEF-GLATQLGIE 768


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 31/172 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 681 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ +QR I KV+   L Y  G   F  +AS+ G+                  + Q+ ++ 
Sbjct: 741 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFARYPGVAQYMEDT 797

Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507
           ++T+  + + E      LW+ +         Q  E  A+   + GTA +L+K
Sbjct: 798 RATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 849


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++LS  V+SDGR+  T     A+ TGR +      QN+P +                  
Sbjct: 601 VDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIPARS----------------- 642

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
             AD +      +R   +A  G + L+ AD + IE R++A ++G++  I+AF +GED++ 
Sbjct: 643 --ADGM-----RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHR 695

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T  +  F TP+ +VS E+R+  K     L Y
Sbjct: 696 TMASMVFGTPVAEVSAEERSRIKATSYGLAY 726


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A I+G++  ++AFANGEDI+  T  + F    + 
Sbjct: 699 IREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 758

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +A + G++
Sbjct: 759 VSSEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 790


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G  ++ AD + IE R++A I+G+   I AF+ G+DI+  T A+ F  P+++
Sbjct: 673 IREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFSEGQDIHRATAAEVFGVPVEQ 732

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   KV+   L Y  G   F  +A+  G++
Sbjct: 733 VNPEQRRYAKVINFGLIY--GMSEF-GLATQLGIE 764


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 33/179 (18%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + +LA +  L RL     ++ KL     +TL E +    GR+  T      + TGR S  
Sbjct: 596 LQELAHEHTLPRLILEHRSLSKLKSTYTDTLPELIHHRTGRIH-TSYHQAVTATGRLSSS 654

Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               QN+P R E+   I                         R   +A  G KLV AD +
Sbjct: 655 EPNLQNIPIRSEQGRRI-------------------------RQAFVAPEGYKLVAADYS 689

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++G+   + AF  GEDI+  T A+ F   +D VS +QR   K +   L Y
Sbjct: 690 QIELRIMAHLSGDKGLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIY 748


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  ++VKL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 552 LARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 611

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRW 320
           + ++  QLA D  L ++     ++ KL +     L E +S   +   T      + TGR 
Sbjct: 612 NEDVLEQLAPDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRL 671

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +G     QN+P   R+EE                         VR    A  G  +V AD
Sbjct: 672 AGNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPPGSVIVSAD 707

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L 
Sbjct: 708 YSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLI 767

Query: 441 YQGG 444
           Y  G
Sbjct: 768 YGMG 771


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  ++VKL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 552 LARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 611

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRW 320
           + ++  QLA D  L ++     ++ KL +     L E +S   +   T      + TGR 
Sbjct: 612 NEDVLEQLAPDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRL 671

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +G     QN+P   R+EE                         VR    A  G  +V AD
Sbjct: 672 AGNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPPGSVIVSAD 707

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L 
Sbjct: 708 YSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLI 767

Query: 441 YQGG 444
           Y  G
Sbjct: 768 YGMG 771


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 31/172 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ +QR I KV+   L Y  G   F  +AS+ G+                  + Q+ ++ 
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFARYPGVAQYMEDT 794

Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507
           ++T+  + + E      LW+ +         Q  E  A+   + GTA +L+K
Sbjct: 795 RATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 846


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G++  + AFANG DI+  T ++ F   +DK
Sbjct: 690 IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLLNAFANGLDIHRATASEVFGIALDK 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRSAKAINFGLIY 767


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T         RL ++   +LK      AV+ DGR+  T     A+ TGR 
Sbjct: 584 LQHLLAHRDVT---------RLKTTVDGLLK------AVADDGRIHTTFHQTIAA-TGRL 627

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P       I T   + +  G                 ++     +L+ AD
Sbjct: 628 SSTDPNLQNIP-------IRTDEGRRIREG----------------FVVGPGYAELMTAD 664

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G++  I+AF +GED++    +KAF+ P  +V+ EQR   K M   L 
Sbjct: 665 YSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGEVTAEQRRRVKAMSYGLA 724

Query: 441 Y 441
           Y
Sbjct: 725 Y 725


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 112/256 (43%), Gaps = 45/256 (17%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL------RMYLFLITGI 251
           G RID+D++ +L E       +LD  +  +      ++ Q + L      +  LF   G+
Sbjct: 508 GVRIDVDVLKRLSE-------ELDTRMATVESEAFAAAGQRFNLNSPKQIQTILFDKMGL 560

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSS-----DGRL 305
            ++  + G   S  +   + +LAK   L RL      + KL NT ++A+        GR+
Sbjct: 561 PVLKKTPGGQPST-NEDVLAELAKQADLPRLILDYRGLAKLKNTYADALPQMIQERTGRV 619

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P   RS+         L R              +R
Sbjct: 620 H-THYHQAVAATGRLSSSDPNLQNIP--VRSD---------LGR-------------RIR 654

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G  L+ AD + IE R++A ++G+    +AFA G DI+  T A+ F  P+++V+
Sbjct: 655 QAFVAEPGHLLISADYSQIELRIMAHLSGDAGLRQAFARGLDIHRATAAEVFAIPLEQVT 714

Query: 426 KEQRAIGKVMELALGY 441
            EQR   K +   L Y
Sbjct: 715 PEQRRAAKAINFGLIY 730


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 134/323 (41%), Gaps = 48/323 (14%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN-----------DRGYRIDLDLVLKL 209
           EYC  DV+ T  L K ++     ERDL  L   I             RG  +D+  + +L
Sbjct: 466 EYCCEDVDFTCRL-KEVLEKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQL 524

Query: 210 QELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSI 264
            + + QE K L E I  +   +  + S +Q   L   LF+  GI     +     T   +
Sbjct: 525 SKELTQELKTLQESIYTMAGEEFNLNSPKQVSEL---LFIKLGIPAPKKTATGHSTSAEV 581

Query: 265 LSH-SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           L    N   LA  ++  RL     +       S+ +    R+  T      + TGR S  
Sbjct: 582 LEFLKNDYPLAGKILEYRLLEKLRSTYVDALPSQVIPRTHRIHSTFN-QSVAATGRLSSQ 640

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+EE   + I+   R E                     G   + AD + 
Sbjct: 641 DPNLQNIPI--RTEE--GRKIRGAFRPE-------------------KEGWSFLSADYSQ 677

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++ +   + AF N EDI+  T A  F  P+++VSKEQR   K +   + Y  
Sbjct: 678 IELRLLAHLSQDPVLMAAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIY-- 735

Query: 444 GAKVFKTMASHCGLDLQQFSQNV 466
           G + F  +A   G++++Q S+ +
Sbjct: 736 GQQAF-GLARELGIEVKQASKFI 757


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  ++VKL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 552 LARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 611

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRW 320
           + ++  QLA D  L ++     ++ KL +     L E +S   +   T      + TGR 
Sbjct: 612 NEDVLEQLAPDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRL 671

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +G     QN+P   R+EE                         VR    A  G  +V AD
Sbjct: 672 AGNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPPGSVIVSAD 707

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L 
Sbjct: 708 YSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLI 767

Query: 441 YQGG 444
           Y  G
Sbjct: 768 YGMG 771


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 30/184 (16%)

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           TL+ + +H     +A  L   RL+   S  +  + L E ++   GR+    +  GA  TG
Sbjct: 627 TLEDLQTHDQSGIVAMILRYRRLSKLKSTYV--DALIELINQQTGRVHTQYRQIGAE-TG 683

Query: 319 RWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           R S      QN+P R E   EI                         R   +A  G  L+
Sbjct: 684 RLSSDSPNLQNIPVRSEEGREI-------------------------RRAFVARPGHVLM 718

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I  +   ++ F  G+DI+  T A+ F+ P+D+VSK QR I K+   
Sbjct: 719 TADYSQIELRVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVF 778

Query: 438 ALGY 441
            + Y
Sbjct: 779 GIIY 782


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++ AD + IE R++A ++G++  I+AF  G DI+  T ++ F  P+D+
Sbjct: 661 IREAFVAEPGHKILAADYSQIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPLDE 720

Query: 424 VSKEQRAIGKVMELALGY 441
           V  EQR   K +   L Y
Sbjct: 721 VESEQRRRAKAVNFGLIY 738


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G  ++ AD + IE R++A I+ +   +KAFA G D++  T ++ FN P+ +
Sbjct: 698 VREAFIAPPGHVILSADYSQIELRIMAHISEDPGLLKAFAEGLDVHRATASEVFNVPVAE 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  GA     +AS+ G++
Sbjct: 758 VSSEQRRYAKVINFGLIYGMGA---FGLASNLGIE 789


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           LS  ++SDG++  TL     + TGR S      QN+P                     I 
Sbjct: 620 LSGYIASDGKIHTTLN-QTITATGRLSSTEPNLQNIP---------------------IR 657

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
             LG     +R   +   G   V +D + IE RVLA ++G++  I+AF NG+DI+ +T +
Sbjct: 658 IELG---KLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTAS 714

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             F+TP D+V+  QR   K +   + Y
Sbjct: 715 LVFDTPFDEVTDLQRRNAKAVNFGIVY 741


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           LS  ++SDG++  TL     + TGR S      QN+P                     I 
Sbjct: 620 LSGYIASDGKIHTTLN-QTITATGRLSSTEPNLQNIP---------------------IR 657

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
             LG     +R   +   G   V +D + IE RVLA ++G++  I+AF NG+DI+ +T +
Sbjct: 658 IELG---KLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTAS 714

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             F+TP D+V+  QR   K +   + Y
Sbjct: 715 LVFDTPFDEVTDLQRRNAKAVNFGIVY 741


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++ AD + IE R++A ++ +   I AFA G+DI+ +T A+ F  P+++
Sbjct: 695 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQ 754

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 755 VTSEQRRNAKAINFGLIY 772


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I + G KL+ AD + IE R++A IA ++  + AF +G+D++  T A+ F  P+D 
Sbjct: 703 IREAFIPAEGCKLLSADYSQIELRIMAHIAEDENLLTAFRDGKDVHQATAAEIFGVPLDD 762

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +A + G++
Sbjct: 763 VSSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIE 794


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G +++ AD + IE R++A I+ +   +KAFA GEDI+  T ++ F  P++ 
Sbjct: 666 IREAFIAPSGYRIISADYSQIELRIMAHISQDAGLLKAFAQGEDIHRATGSEIFGVPLET 725

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   K++   L Y  G   F  +A+  G++
Sbjct: 726 VNSEQRRYAKIINFGLIY--GMSEFG-LATQLGIE 757


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 402 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 461

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 462 VNADQRRIAKVINFGLIY--GMSAFG-LASNLGI 492


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 48/82 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A+ G KLV AD + IE R++A I+G+   +KAFA+G D++  T A+ FN     
Sbjct: 695 VREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFADGMDVHRATAAEVFNIAAAD 754

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+ EQR   K +   L Y  GA
Sbjct: 755 VTSEQRRYAKTINFGLIYGMGA 776


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  AV+SDGR+  T     A+ TGR 
Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNAVASDGRIHTTFNQTIAA-TGRL 647

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +  +G  +L+ A
Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYGELMTA 683

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF+ PID+V+ E R   K M   L
Sbjct: 684 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGL 743

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ E +
Sbjct: 744 AY--------------GLSAYGLSQQLK-ISTEEAKEQMEQY 770


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  AV+SDGR+  T     A+ TGR 
Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNAVASDGRIHTTFNQTIAA-TGRL 647

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +  +G  +L+ A
Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYGELMTA 683

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF+ PID+V+ E R   K M   L
Sbjct: 684 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGL 743

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ E +
Sbjct: 744 AY--------------GLSAYGLSQQLK-ISTEEAKEQMEQY 770


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 31/177 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G+ +  AD + IE R++A ++G+D  ++AF  G D++  T A+ F   +D+
Sbjct: 688 VREAFVAPPGRVIASADYSQIELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQ 747

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476
           VS EQR   KV+   L Y  G   F  +A + G+D       + ++ Q       + D  
Sbjct: 748 VSSEQRRYAKVINFGLIY--GMSSFG-LARNLGIDNKAAAAYIDRYFQRYPGVKQYMDET 804

Query: 477 QAES------HHLWMQDQY-PEF--------------AVKDKLIGTACELVKKAWRA 512
           +A +        ++ +  Y PE               A+   + GTA +L+KKA  A
Sbjct: 805 KASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAAINAPMQGTAADLIKKAMVA 861


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 33/160 (20%)

Query: 289 ILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341
           I+KLN T  E +++     DGR+  T      + TGR S      QN+P R E    +  
Sbjct: 596 IVKLNSTYVEGLTALINPIDGRIHSTFN-QTITTTGRISSTEPNLQNIPVRMEIGRRL-- 652

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  R+  ++ + K+LV AD + +E RVLA ++G+   I A
Sbjct: 653 -----------------------RAVFVSDDEKRLVDADYSQVELRVLAHMSGDQNMIDA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +GEDI+  T ++ FN P+++V+ E R+  K +   + Y
Sbjct: 690 FKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIY 729


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G+ +  AD + IE R++A ++G+D  ++AF  G D++  T A+ F   +D+
Sbjct: 688 VREAFVAPPGRVIASADYSQIELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQ 747

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +A + G+D
Sbjct: 748 VSSEQRRYAKVINFGLIY--GMSSFG-LARNLGID 779


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 10/134 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADPL------GLASDCVRSCIIASNGK-KLVVADLAG 383
           P  +R      QT+ A  R  ++   L            +R   IA N + K++ AD + 
Sbjct: 663 PVTQRVHTTFAQTVAATGRLSSVNPNLQNIPIRTEEGQQIRKAFIARNPEYKIISADYSQ 722

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A +A +   +KAF +GEDI+ +T AK F   +D+V++EQR+  K +   + Y  
Sbjct: 723 IELRLIAQMAQDPVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIY-- 780

Query: 444 GAKVFKTMASHCGL 457
           G   F  +A   GL
Sbjct: 781 GVSAF-GLAQQTGL 793


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A I+G++  + +F+ GEDI+  T A+ F+    +
Sbjct: 674 IREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 30/177 (16%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA++  L RL     ++ KL +     L E +   GR+  T      + TGR S   
Sbjct: 606 LQELAENYELPRLIMEHRSLAKLKSTYTDKLPEMIQHTGRIH-TSYHQAVTATGRLSSTD 664

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P       I TQ       G  I           R   +A  G KLV AD + I
Sbjct: 665 PNLQNIP-------IRTQ------EGRRI-----------RQAFVAPEGHKLVAADYSQI 700

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           E R++A ++ +   + AFA+ ED++  T A+ F   +D V+ EQR   K +   L Y
Sbjct: 701 ELRIMAHLSQDKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINFGLIY 757


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 596 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+EE                         VR    A  G  +V A
Sbjct: 715 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 750

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810

Query: 440 GYQGG 444
            Y  G
Sbjct: 811 IYGMG 815


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++ AD + IE R++A ++ +   I AFA G+DI+ +T A+ F  P+++
Sbjct: 747 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINAFAQGKDIHRSTAAELFGLPLEQ 806

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 807 VTSEQRRNAKAINFGLIY 824


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++ AD + IE R++A ++ +   I AFA G+DI+ +T A+ F  P+++
Sbjct: 712 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINAFAQGKDIHRSTAAEIFGLPLEQ 771

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 772 VTSEQRRNAKAINFGLIY 789


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 596 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+EE                         VR    A  G  +V A
Sbjct: 715 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 750

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810

Query: 440 GYQGG 444
            Y  G
Sbjct: 811 IYGMG 815


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 28/177 (15%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L + V  DGR+R T Q    +RTGR S      QN+P   R+EE             
Sbjct: 588 VDGLLKVVGPDGRVRSTFQ-QTETRTGRISSTEPNLQNIPI--RTEE------------- 631

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R    A  G KLV AD + IE RVLA +A +   I AF +GEDI+ T
Sbjct: 632 ---------GSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHAT 682

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           T A+ F  P   V+   R+  K +   + Y  GA    +++   G+ + +    +KS
Sbjct: 683 TAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGA---FSLSQDIGVTVSEADSYIKS 736


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 130/303 (42%), Gaps = 55/303 (18%)

Query: 153 VQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +Q  QLFG   +     T ELFK + IPL     D+ L        G  +D   + KL  
Sbjct: 519 LQLAQLFGPELRE--AQTEELFKEIEIPLLRVLADMEL-------EGINLDTGFLEKLS- 568

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSH 267
                  +L++DI  L   I  ++ + + +    ++   L   + LVD  + T     S 
Sbjct: 569 ------GELEKDIEGLVGKIYEAAGEEFNIGSPKQLGEILFDKMKLVDKPKKTRTGQYST 622

Query: 268 SN--ITQLAKDLILNRLASSGSAILKLNTL------SEAVSSDGRLRGTLQFYGASRTGR 319
           +   ++ LAK+  + ++      + KL +        +   S GR+  T      + TGR
Sbjct: 623 AEDVLSGLAKEHEIVQMVLDYRGLTKLKSTYVDALPQQVAPSTGRVH-TDYMQTVAATGR 681

Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            S      QN+P R ER  +I                         ++ I  S   +L+ 
Sbjct: 682 LSSNNPNLQNIPIRTERGRQIR------------------------KAFIPRSPEYQLLA 717

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ ED  I++F  GEDI+  T A+ F  P+++V++EQR+  K +   
Sbjct: 718 ADYSQIELRIIAALSEEDTMIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFG 777

Query: 439 LGY 441
           + Y
Sbjct: 778 IIY 780


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+VAD + IE R+LA I GE+  ++ F  GEDI+  T A+ F  P + 
Sbjct: 630 IRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDIHRRTAAQIFGVPPEA 689

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R + KV+   + Y
Sbjct: 690 VTPEGRRVAKVINFGVLY 707


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  GK +  AD + IE R++A ++G++  + AF NG D++  T A+ F   +D+
Sbjct: 698 VREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDE 757

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 758 VSSEQRRYAKVINFGLIY 775


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 25/174 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G ++V AD + IE R++A ++ +   + AF+ GEDI+  T ++ F  P+ K
Sbjct: 688 IRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSK 747

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y               G AK +  +       + ++ +N +  
Sbjct: 748 VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQL 807

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512
           +    + E  +   LW+ D     A++ K          + GTA +++K+A  A
Sbjct: 808 AASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861


>gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 36/181 (19%)

Query: 270 ITQLAKD--LILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSG 322
           ++ LAKD  +I N L   G A LK +T  +A+      S GR+  T      + TGR S 
Sbjct: 638 LSVLAKDHEIIRNILEYRGLAKLK-STYVDALPLQVEESTGRVH-TDYMQTVAATGRLSS 695

Query: 323 CVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380
                QN+P R ER  +                         VR   I  N    L+ AD
Sbjct: 696 NNPNLQNIPIRTERGRQ-------------------------VRKAFIPRNDDYTLLAAD 730

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ E+  I+AF NGEDI+ +T +K F  PI++V++ QR+  K +   + 
Sbjct: 731 YSQIELRIIAALSKEETMIEAFKNGEDIHASTASKVFGVPIEEVTRAQRSNAKTVNFGII 790

Query: 441 Y 441
           Y
Sbjct: 791 Y 791


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+EE                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 25/174 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G ++V AD + IE R++A ++ +   + AF+ GEDI+  T ++ F  P+ K
Sbjct: 688 IRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSK 747

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y               G AK +  +       + ++ +N +  
Sbjct: 748 VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQL 807

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512
           +    + E  +   LW+ D     A++ K          + GTA +++K+A  A
Sbjct: 808 AASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 529 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 588

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 589 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 647

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+EE                         VR    A  G  +V A
Sbjct: 648 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 683

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 684 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 743

Query: 440 GYQGG 444
            Y  G
Sbjct: 744 IYGMG 748


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  GK +  AD + IE R++A ++G++  + AF NG D++  T A+ F   +D+
Sbjct: 692 VREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDE 751

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 752 VSSEQRRYAKVINFGLIY 769


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++ +D  + AFA GEDI+  T A+ F    D 
Sbjct: 679 IREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDA 738

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           VS EQR   KV+   L Y  G   F  +A + G++ +Q +QN
Sbjct: 739 VSSEQRRYAKVINFGLIY--GMSAFG-LAQNLGIE-RQAAQN 776


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 372 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 431

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y              +  A+ +  +       +QQF  ++++ 
Sbjct: 432 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 491

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 492 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 543


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD--------------LQQFSQNVKST 469
           V+ EQR   K +   L Y   A           LD              +QQF  ++++ 
Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRLDAQKYMDLYFQRYPSVQQFMTDIRAK 811

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++ +D  + AFA GEDI+  T A+ F    D 
Sbjct: 679 IREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDA 738

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           VS EQR   KV+   L Y  G   F  +A + G++ +Q +QN
Sbjct: 739 VSSEQRRYAKVINFGLIY--GMSAFG-LAQNLGIE-RQAAQN 776


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 31/172 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 678 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ +QR I KV+   L Y  G   F  +AS+ G+                  + Q+ ++ 
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFARYPGVAQYMEDT 794

Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507
           ++T+  + + E      LW+ +         Q  E  A+   + GTA +L+K
Sbjct: 795 RATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 846


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 41/182 (22%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L ++V++DGR+  T     A+ TGR 
Sbjct: 598 LEHLLTHRDVTRLK---------------VTVDGLLKSVAADGRIHTTFNQTIAA-TGRL 641

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E   EI                            ++ +  ++L+  
Sbjct: 642 SSTEPNLQNIPVRTEAGREIRD------------------------GFVVGAGYRELMTV 677

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    A+AF  PID+V+ E R   K M   L
Sbjct: 678 DYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFGVPIDEVTAELRRRVKAMSYGL 737

Query: 440 GY 441
            Y
Sbjct: 738 AY 739


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  GK +  AD + IE R++A ++G++  + AF NG D++  T A+ F   +D+
Sbjct: 698 VREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDE 757

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 758 VSSEQRRYAKVINFGLIY 775


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 76  IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 135

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 136 VTSEQRRNAKAINFGLIY--GMSAF-GLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 192

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           ++ +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 193 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 247


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 31/172 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 9   IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 68

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ +QR I KV+   L Y  G   F  +AS+ G+                  + Q+ +N 
Sbjct: 69  VNADQRRIAKVINFGLIY--GMSAF-GLASNLGITRDAAKLYIDRYFTRYPGVAQYMENT 125

Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507
           ++++  + + E      LW+ +         Q  E  A+   + GTA +L+K
Sbjct: 126 RASAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 177


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F   +DK
Sbjct: 690 IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDK 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRSAKAINFGLIY 767


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 146/348 (41%), Gaps = 62/348 (17%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITG 250
           ++   G  +D   ++ L+  + Q+   L E+I  L      I+S +Q   L   L+   G
Sbjct: 494 SMERNGMPLDSKKLVSLEHSLEQDLAILTEEIYTLAGEPFNIKSPKQ---LANILYNKLG 550

Query: 251 IDLVDMSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           I  +D ++ T   +L      H  I +L     L +L S+    L      +      R+
Sbjct: 551 ITPLDKAKSTRAEVLEALREEHKIIEKLLMFRALEKLLSTYVKALP----RQVAPQTQRI 606

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T +  G + TGR +      QN+P++              +RG ++ +   +  + V 
Sbjct: 607 HATFEQMGTA-TGRLACRDPNLQNIPKRS-------------SRGLSLREAFLVPCETV- 651

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
                      + AD + IE R+LA ++ ++  + AF  GEDI+  T ++ F+ P+D+V+
Sbjct: 652 ---------SFLAADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVT 702

Query: 426 KEQRAIGKVMELALGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAES 480
           K+QR   K +   + Y     G +K+ K   S     +Q + +     + F E+   A S
Sbjct: 703 KQQRMYAKTVNFGIIYGQQAYGLSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAAS 762

Query: 481 HHLWMQ------------DQYP-------EFAVKDKLIGTACELVKKA 509
           H L +             D++P         AV  ++ G+A EL+K A
Sbjct: 763 HDLKVTTMLGRERVIDNWDEHPGIRASSGRLAVNTRIQGSAAELIKCA 810


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIARKGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y              +  A+ +  +       +QQF  ++++ 
Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 811

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLISAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y              +  A+ +  +       +QQF  ++++ 
Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 811

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y              +  A+ +  +       +QQF  ++++ 
Sbjct: 757 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 816

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 817 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 46/303 (15%)

Query: 146 DCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           D T   H++ W +L  E   ++V    E+   L  +S  ER+  L+DQ I     +   +
Sbjct: 502 DVTLQLHLKMWPELEKEQGPKEVFENIEM-PLLTVISRIERNGVLIDQGILAAHSK---E 557

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           L ++L EL  Q+  +L  +   L+     S +Q   L+  LF   GI     + G   S 
Sbjct: 558 LTIRLAEL-EQKAHELAGEPFNLS-----SPKQ---LQTILFEKQGIKPTKKTPGGAPST 608

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTG 318
            S   + +LA D  L ++      + KL +T ++ +        GR+  T      + TG
Sbjct: 609 -SEEVLAELALDYPLPKVILENRGLAKLKSTYTDKLPLMINPITGRVH-TSYHQAVTATG 666

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P   R+EE                         +R   IAS G K+V 
Sbjct: 667 RLSSTDPNLQNIPV--RNEE----------------------GRRIRQAFIASKGHKIVA 702

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ +   + AFA G DI+  T A+ F   +DKV+ EQR   K +   
Sbjct: 703 ADYSQIELRIMAHLSQDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFG 762

Query: 439 LGY 441
           L Y
Sbjct: 763 LIY 765


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 35/187 (18%)

Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341
           A  KLN+     L + +  DGR+  T     A RTGR S      QN+P R E   ++  
Sbjct: 569 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 625

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  R+  IA  G  LV AD + IE R+LA I G++   +A
Sbjct: 626 -----------------------RAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQA 662

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F NGEDI+ +T AK +  P ++V+   R+  K +   + Y  GA    ++A   G+ +++
Sbjct: 663 FLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGA---YSLAKDIGVSVKE 719

Query: 462 FSQNVKS 468
               +K+
Sbjct: 720 ADAFLKN 726


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 808

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           ++ +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 809 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G  ++ AD + IE R++A +A +   IKAFA G+DI+ +T A+ F  P++ 
Sbjct: 716 IRQAFIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEA 775

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 776 VTSEQRRSAKAINFGLIY 793


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 757 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 813

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           ++ +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 814 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 32/176 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  ++ L +     RL ++   ++K      AV  DGR+  T +    + TGR S     
Sbjct: 596 HPFLSHLLEHRDATRLMTTAQGLIK------AVGPDGRIHTTFR-QDVAATGRLSSTDPN 648

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIE 385
            QN+P   R+EE                      +  +R   +   G + L+ AD + IE
Sbjct: 649 LQNIPV--RTEE----------------------ARRIRGVFVVGEGHEALMTADYSQIE 684

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            R++A ++G++  I+AF  GED++    ++AF  PID+V  E R   K M   L Y
Sbjct: 685 MRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVGAELRRRVKAMSYGLAY 740


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ ++  +KAFA G+DI+  T A+ F   +DK
Sbjct: 693 IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAEGKDIHRATAAEVFGVQLDK 752

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 753 VTGEQRRSAKAINFGLIY 770


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 49/301 (16%)

Query: 161 EYCKRDVEATRELFKRLIP--LSDGERDLW------LLD--QTINDRGYRIDLDLVLKLQ 210
           EY   D + T +L +   P   S G   L+      LLD    +   G  +D D +  L 
Sbjct: 513 EYAVEDADITLQLKEHFTPELASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLS 572

Query: 211 ELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             +  +  +L++DI ++   +  I S +Q     + + L   + LVD  + T     S +
Sbjct: 573 GDLETDITQLEKDIYEVAGEEFNIGSPKQ-----LGVILFEKLKLVDKPKKTKTGQYSTA 627

Query: 269 N--ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
              ++ LAKD  +I N L   G + LK   ++ L   V +  +   T      + TGR S
Sbjct: 628 EDVLSYLAKDHAIIQNVLDYRGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLS 687

Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
                 QN+P R ER  ++                         ++ I       L+ AD
Sbjct: 688 STDPNLQNIPIRTERGRQVR------------------------KAFIPRDENYTLIAAD 723

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ E+  I AF +GEDI+ +T AK FN  ++ V++EQR+  K +   + 
Sbjct: 724 YSQIELRIIAALSEEENMIAAFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGII 783

Query: 441 Y 441
           Y
Sbjct: 784 Y 784


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A     LV AD + IE R+LA IA ++  I AF+ G+DI+  T ++ FN P+D+
Sbjct: 649 LRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGDDIHTITASEVFNVPLDE 708

Query: 424 VSKEQRAIGKVMELALGY 441
           V+KE R+  K +   + Y
Sbjct: 709 VTKELRSAAKAVNFGIVY 726


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G  ++ AD + IE R++A +A +   IKAFA G+DI+ +T A+ F  P++ 
Sbjct: 716 IRQAFIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEA 775

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 776 VTSEQRRSAKAINFGLIY 793


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+C  A  G +LV AD + IE RVLA ++GE   + AFA+G DI+  T A  F+ P + 
Sbjct: 649 MRACFTAGPGNRLVAADYSQIELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEA 708

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
           ++ ++R   K +   L Y  G +
Sbjct: 709 IAPDERRQAKTINFGLLYGMGPQ 731


>gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes
           HL025PA1]
          Length = 112

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 11/109 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET SP PL K GV+ YAE     L    Y+ D  PV++ D      +P ++L
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSV 98
             L D  V+  AHN+ FER+     L    P           +W CT V
Sbjct: 61  AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMV 109


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++G+   ++AFA G+DI+  T A+ F  P++ 
Sbjct: 691 IRQAFIAPVGSRIVAADYSQIELRIMAHLSGDKGLLQAFAAGKDIHRATAAEVFGLPLEA 750

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 751 VSADQRRSAKAINFGLIY 768


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 11  IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 70

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 71  VTSEQRRSAKAINFGLIY 88


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 42/207 (20%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L  AV++DGR+  T     A+ TGR 
Sbjct: 600 LQHLLTHRDVTRLK---------------VTVDGLLNAVAADGRIHTTFNQTIAT-TGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P +              N G  I D   + S+        +NG  +L+ A
Sbjct: 644 SSTEPNLQNIPIRT-------------NAGRQIRDAFVVGSE--------NNGYTELMTA 682

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF  PI+ ++ E R   K M   L
Sbjct: 683 DYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGL 742

Query: 440 GY----QGGAKVFKTMASHCGLDLQQF 462
            Y     G A   K       L ++Q+
Sbjct: 743 AYGLSAYGLATQLKISTEEAKLQMEQY 769


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 681 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 741 VNADQRRIAKVINFGLIY--GMSAFG-LASNLGI 771


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 678 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 738 VNADQRRIAKVINFGLIY--GMSAFG-LASNLGI 768


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 808

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           ++ +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 809 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++G+   ++AFA G+DI+  T A+ F  P++ 
Sbjct: 691 IRQAFIAPAGSKIVAADYSQIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEA 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 751 VTADQRRSAKAINFGLIY 768


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K+V AD + IE R++A ++ +   + AFA G+DI+  T ++ F  P+D+
Sbjct: 692 IRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTSEQRRSAKAINFGLIY 769


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L ++V+ DGR+  T     A+ TGR 
Sbjct: 606 LEHLLAHRDATRLK---------------VTVDGLLKSVADDGRIHTTFNQTIAA-TGRL 649

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P       I T T      G  I D          + ++     +L+ AD
Sbjct: 650 SSTEPNLQNIP-------IRTDT------GRMIRD----------TFVVGPGYAELMTAD 686

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G++  I+AF +GED++    +KAF+ PI +VS E R   K M   L 
Sbjct: 687 YSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLA 746

Query: 441 Y 441
           Y
Sbjct: 747 Y 747


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I ++G KL+ AD + IE R++A IA ++  + AF  G+D++  T A+ F  P+D 
Sbjct: 704 IREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDD 763

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   KV+   L Y  G   F  +A + G++
Sbjct: 764 VNSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIE 795


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +
Sbjct: 681 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 741 VNADQRRIAKVINFGLIY--GMSAF-GLASNLGI 771


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D+
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 741 VTTEQRRRAKAVNFGLIY 758


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 129/309 (41%), Gaps = 57/309 (18%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLV 206
           +L  EY   D + T +L    +PL + ++ L L  +           +   G R+D    
Sbjct: 492 ELQKEYAVEDTDVTLQLKHVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVD---- 547

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGT 260
                 +AQ  K++  D++ L   I   + +++ L         LF    +        T
Sbjct: 548 ---THFLAQLSKEIAADLIGLEKTIFSQAEESFNLSSPKQLGDILFEKLKLLSKPKKTKT 604

Query: 261 LKSILSHSNITQLA--KDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFY 312
            +   S   +++LA   +++ N L     A+ KL +T  EA+  +     GR+  T    
Sbjct: 605 GQYATSEEVLSELASKHEIVANVL--EFRALQKLQSTYIEALPREVNPHTGRIHTTF-MQ 661

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P                     I  P G  S   ++ +  + 
Sbjct: 662 AVTATGRLSSNQPNLQNIP---------------------IRTPRG--SQIRKAFVPRNE 698

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              L+ AD + IE R++A ++ ED  I+AF  G+DI+ +T AK F  P++ V+KEQR+  
Sbjct: 699 DYTLLSADYSQIELRIIAALSEEDHMIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHA 758

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 759 KTVNFGIIY 767


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D+
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 741 VTTEQRRRAKAVNFGLIY 758


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D+
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 741 VTTEQRRRAKAVNFGLIY 758


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+EE                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D+
Sbjct: 695 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 754

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 755 VTTEQRRRAKAVNFGLIY 772


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D+
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 741 VTTEQRRRAKAVNFGLIY 758


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 42/207 (20%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L  AV++DGR+  T     A+ TGR 
Sbjct: 604 LQHLLTHRDVTRLK---------------VTVDGLLNAVAADGRIHTTFNQTIAT-TGRL 647

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P +              N G  I D   + S+        +NG  +L+ A
Sbjct: 648 SSTEPNLQNIPIRT-------------NAGRQIRDAFVVGSE--------NNGYTELMTA 686

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF  PI+ ++ E R   K M   L
Sbjct: 687 DYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGL 746

Query: 440 GY----QGGAKVFKTMASHCGLDLQQF 462
            Y     G A   K       L ++Q+
Sbjct: 747 AYGLSAYGLATQLKISTEEAKLQMEQY 773


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G K+V AD + IE R++A ++ ++  +KAF+ G+DI+  T A+ FN  + +
Sbjct: 688 VRQAFIARPGYKIVAADYSQIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVFNVSLTE 747

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 748 VTTEQRRNAKAINFGLIY 765


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F TP++K
Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGTPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y              +  A+ +  +       +QQF  +++  
Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIREK 811

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 37/293 (12%)

Query: 162 YCKRDVEATRELFKRLIP---LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           Y   D + T ++ + L P    +DG R ++ L+   ++  +RI+ + VL     +A++  
Sbjct: 517 YACEDADQTLDVHRVLWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSN 576

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            L + IV+L       + Q + L          F   G+ +V  +    +S      + +
Sbjct: 577 DLGQRIVQLEQEAYDIAGQPFNLASPKQLGEIFFDKLGMPVVKKTATGARST-DEEVLEK 635

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT----LQFYGASRTGRWSGCVFQPQ 328
           LA+D  L       + +L+  +LS       +L+GT    L      RTGR      Q  
Sbjct: 636 LAEDYPLP------AKLLEHRSLS-------KLKGTYTDKLAQLALPRTGRVHTHYAQAV 682

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            +  +  S +   Q I        I  P G     VR   IA+ G  +  AD + IE R+
Sbjct: 683 AVTGRLSSNDPNLQNI-------PIRTPEGRR---VREAFIAAPGHVIASADYSQIELRI 732

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +A ++G++  ++AF  G D++  T ++ FN  +++VS EQR   KV+   L Y
Sbjct: 733 MAHLSGDESLLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIY 785


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++G+   + AFA G+DI+  T A+ F  P++ 
Sbjct: 691 IRQAFIAPAGSRIVAADYSQIELRIMAHLSGDKGLLAAFAAGKDIHRATAAEVFGLPLEA 750

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 751 VSADQRRSAKAINFGLIY 768


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y              +  AK +  +       +QQF  +++  
Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDAKKYMDLYFQRYPSVQQFMTDIREK 811

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 45/66 (68%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ E+  I AF NGEDI+ +T AK FN P+++V+++QR+  K +
Sbjct: 753 LLAADYSQIELRIIAALSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTV 812

Query: 436 ELALGY 441
              + Y
Sbjct: 813 NFGIVY 818


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 386 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 445

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 446 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 476


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 473


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 505 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 564

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 565 VTSEQRRNAKAINFGLIY--GMSAF-GLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 621

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKA 509
           ++ +  + + E      L++ D     A++ K          + GTA +++K+A
Sbjct: 622 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRA 675


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 473


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 20/165 (12%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+C  A  G+KL++AD + IE RV A I+G+   I A+  GED+++ T +   + PI ++
Sbjct: 345 RACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIAEI 404

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASH---CGLDLQQFSQ----NVKSTSTFEDWEQ 477
           + ++R   K +   L +  GA   +  A       + L+Q ++      K+ +    W Q
Sbjct: 405 TPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQ 464

Query: 478 AESHHLWMQDQ--------YPEFA-----VKDKLIGTACELVKKA 509
           +   HL  + +        Y E A         + GTA ++VKKA
Sbjct: 465 SIKAHLPKEGRTLAGRKFVYYEKAGLPGYYNTPVQGTAADIVKKA 509


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 379 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 438

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 439 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 469


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 25/153 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ + + +  DG++  T Q    ++TGR S      QN+P   R+EE             
Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   + S G  L+ AD + IE RVLA +A ++  I AF NG DI+  
Sbjct: 633 ---------GRLIRKAFVPSQGSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRK 683

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           T ++ F    DKV+  QR+  K +   + Y  G
Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 757 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 813

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 814 REKAKTQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 381 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 440

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 441 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 471


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 380 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 439

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 440 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 470


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 58/246 (23%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  + +    +GR+  T     A+ TGR S      QN+P +                  
Sbjct: 576 LEPMPQLADKNGRIHTTFNQL-ATATGRLSSSNPNLQNIPIR------------------ 616

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                 G     +RSC +AS G +LV AD + IE RVLA ++G+    +AFA G+DI+  
Sbjct: 617 ------GALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHAR 670

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FS 463
           T    F+T   +VS ++R   K +   L Y  G    + +    G+ L++        FS
Sbjct: 671 TAGILFDT--TEVSADERRKAKTINFGLLYGMGP---QKLGRELGISLKEAKEFIAVYFS 725

Query: 464 QNVKSTSTFEDWE--------------------QAESHHLWMQDQYPEFAVKDKLIGTAC 503
           +  +    +E+ E                    +  S +  M  Q    A+   + G+A 
Sbjct: 726 KLSRVREFYEEIEAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQARRMAINTVVQGSAA 785

Query: 504 ELVKKA 509
           +++KKA
Sbjct: 786 DIIKKA 791


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G ++V AD + IE R++A I+ ++  ++AF+ GEDI+  T A+ F     +
Sbjct: 680 IREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQGEDIHRATAAEVFGVTPLE 739

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 740 VSNDQRRIAKVINFGLIY--GMSAFG-LASNLGI 770


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A+ G  +  AD + IE R++A I+ +   ++AF +G D++  T A+ F  P+D+
Sbjct: 303 VREAFVAAPGCVIASADYSQIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQ 362

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +A + G+D
Sbjct: 363 VSSEQRRYAKVINFGLIY--GMSAF-GLARNLGID 394


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++ AD + IE R++A ++G++  ++AF  G+D++  T A+ F   +D+
Sbjct: 537 IRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLEAFNQGKDVHSATAAEVFGVELDQ 596

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462
           V++EQR   K +   L Y  G   F  +A   G+   D QQ+
Sbjct: 597 VTQEQRRRAKAINFGLIY--GMSAFG-LAKQLGVGRNDAQQY 635


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 31/187 (16%)

Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           TL+S+  +S  I Q+ K     +L S+      +  L  A ++DGR+  T      +RTG
Sbjct: 523 TLESLRPYSPVIDQILKYRTYAKLLST-----YVEGLLSAQAADGRVHSTF-IQTEARTG 576

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                     I   LG     +R   +A  GK+LV 
Sbjct: 577 RISSTEPNLQNIP---------------------IRTELG---SRLRGFFVAGAGKELVD 612

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA I G++   +AF +G DI+ +T AK ++ P  +V+ + R+  K +   
Sbjct: 613 ADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRSASKAINFG 672

Query: 439 LGYQGGA 445
           + Y  GA
Sbjct: 673 IMYGKGA 679


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 637 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 696

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 697 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 727


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 687 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++++ DGR+  TL    A+ TGR S      QN+P   R+EE             
Sbjct: 608 VDGLVKSIADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPI--RTEE------------- 651

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   +   G  +L+ AD + IE R++A ++G++  I+AF  GED++ 
Sbjct: 652 ---------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHN 702

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++AF  PID+V  E R   K M   L Y
Sbjct: 703 YVASRAFGVPIDEVDHELRRRVKAMSYGLAY 733


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++++ DGR+  TL    A+ TGR S      QN+P   R+EE             
Sbjct: 609 VDGLVKSIADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPI--RTEE------------- 652

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   +   G  +L+ AD + IE R++A ++G++  I+AF  GED++ 
Sbjct: 653 ---------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHN 703

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++AF  PID+V  E R   K M   L Y
Sbjct: 704 YVASRAFGVPIDEVDHELRRRVKAMSYGLAY 734


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R++A ++G+   + AF +GEDI+  T A+ F   +D+
Sbjct: 668 IRQAFIAPKGYKLLAADYSQIELRIMAHLSGDRGLLTAFEHGEDIHKATAAEVFGVTVDE 727

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 728 VTGDQRRSAKAINFGLIY 745


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 25/155 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L   V   GR+  T     A+ TGR S      QN+P                    
Sbjct: 632 LDPLPRLVDGQGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------------- 670

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            +  PLG     +R+C IA  G+ LV AD + +E RVLA ++ +   + AF  GEDI+  
Sbjct: 671 -VRGPLG---KRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGEDIHAR 726

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           T A  ++    +VS +QR   K +   L Y  GA+
Sbjct: 727 TAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGAQ 761


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I + G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+
Sbjct: 719 IRQAFITNKGYKIVAADYSQIELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQ 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 779 VTSEQRRSAKAINFGLIY 796


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRADAQKYMDLYFQRYPSVQQFMTDI 808

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 809 REKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A I+ ++  +KAFAN EDI+  T A+ F    ++
Sbjct: 681 IREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNEDIHRATAAEIFGIAPEQ 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V  EQR   KV+   L Y  G   F  +AS+ G++
Sbjct: 741 VESEQRRYAKVINFGLIY--GMSAFG-LASNLGIE 772


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           V+ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 808

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 809 REKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D+
Sbjct: 691 IRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDE 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 751 VTSDQRRSAKAINFGLIY 768


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     ++ AD + IE R++A ++ ++  +KAFA G+DI+  T A+ F TP++K
Sbjct: 694 IRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPLEK 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 754 VSGEQRRSAKAINFGLIY 771


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 35/179 (19%)

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            RL ++   ++K      A+  DGR+  T +    + TGR S      QN+P   R++E 
Sbjct: 610 TRLMTTAQGLIK------AIGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIPV--RTDE- 659

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398
                                +  +R   +   G + L+ AD + IE R++A ++G+D  
Sbjct: 660 ---------------------ARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDDGL 698

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           I+AF  GED++    ++AF  PID+V  E R   K M   L Y  G   F  +AS  G+
Sbjct: 699 IEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMSYGLAY--GLSAFG-LASQLGV 754


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   +KAF++G DI+  T A+ F  P+DK
Sbjct: 690 IRQAFIAPQGYQILAADYSQIELRIMAHLSRDAGLLKAFSDGLDIHRATAAEVFGLPLDK 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTTEQRRSAKAINFGLIY 767


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 39/187 (20%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L ++V+ DGR+  TLQ   A+ TGR S      QN+P   R+EE           G  I 
Sbjct: 627 LIKSVADDGRIHTTLQQTIAA-TGRLSSIEPNLQNIPV--RTEE-----------GRRIR 672

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           D          + ++     +L+ AD + IE R++A ++ ++  I+AF +GED++    +
Sbjct: 673 D----------AFVVGDGYAELMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVAS 722

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +AF+ P  +++ EQR   K M   L Y              GL     SQ +K  ST + 
Sbjct: 723 RAFSVPAAEITPEQRYRVKAMSYGLAY--------------GLSAYGLSQQLK-ISTEDA 767

Query: 475 WEQAESH 481
            EQ E++
Sbjct: 768 KEQMEAY 774


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 27/140 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  +    GAS TGR S      QN+P R     +I                      
Sbjct: 697 GRVHTSFSMVGAS-TGRLSSSDPNVQNIPIRTSEGRQI---------------------- 733

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R+  IA+ G KL+  D + IE R++A +AGE   I+AF +G DI+  T ++ F  P+
Sbjct: 734 ---RTAFIAAEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPL 790

Query: 422 DKVSKEQRAIGKVMELALGY 441
           D++  E R   K +   + Y
Sbjct: 791 DQMDSETRRRAKAINFGIIY 810


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   IDK
Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDK 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE + Q + +
Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 80

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           S  +R+  IA +G    + D + IEARV+AW+AGE W++  F +   IY  + ++ F+ P
Sbjct: 11  SQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIP 70

Query: 421 IDKVSKEQR 429
           I++V K  R
Sbjct: 71  IEEVDKNLR 79


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R+  IA  G K++ AD + IE R++A ++ ++  +KAF  G D++  T A+ F+ P+D
Sbjct: 676 SIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKAFEEGLDVHSATAAEVFDVPLD 735

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+  QR   K +   L Y
Sbjct: 736 EVTSNQRRNAKAINFGLIY 754


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G K+V AD + IE R++A I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 684 IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D 
Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 742 VTSEQRRRAKAVNFGLIY 759


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D 
Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 742 VTSEQRRRAKAVNFGLIY 759


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   IDK
Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDK 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE + Q + +
Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D 
Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 742 VTSEQRRRAKAVNFGLIY 759


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 285 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 344

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G   F  +A   G+
Sbjct: 345 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 375


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 24/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    G + TGR S      QNLP +E   E +  T++A               D
Sbjct: 629 GRVHTSFNQTGTA-TGRLSSSEPNLQNLPIREEDGERIRSTVKAQK------------DD 675

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            V           L+ AD + IE RVLA +  ++  I AF NGEDI+  T A  F   ID
Sbjct: 676 YV-----------LLSADYSQIELRVLAHLTNDETLINAFNNGEDIHALTAAAIFGVKID 724

Query: 423 KVSKEQRAIGKVMELALGY 441
            V    R +GKV+  +L Y
Sbjct: 725 DVDYNMRRVGKVVNFSLVY 743


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + ++ D GR+  +    GAS TGR +      QN+P   RSEE             
Sbjct: 658 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE------------- 701

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   IA  GK LV  D + IE R+LA +AG D   +AF +G DI+  
Sbjct: 702 ---------GRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHDIHAM 752

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+ P+D+++ + R   K +   + Y
Sbjct: 753 TASEMFDVPLDEMTADVRRQAKAINFGVIY 782


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 32/164 (19%)

Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341
           A  KLN+     L + +  DGR+  T     A RTGR S      QN+P R E   ++  
Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 618

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  R+  +A  G  LV AD + IE R+LA I G++   +A
Sbjct: 619 -----------------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           F NGEDI+ +T AK +  P  +V+   R+  K +   + Y  GA
Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGA 699


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ +   +KAF++G DI+  T A+ F  PIDK
Sbjct: 691 IRQAFIAPEGYCIVAADYSQIELRIMAHLSCDAGLLKAFSDGLDIHRATAAEVFGLPIDK 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 751 VTAEQRRSAKAINFGLIY 768


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G  +V AD + IE R++A I+G++  ++AFA+GEDI+  T A+ F      
Sbjct: 673 IREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFADGEDIHRATAAEIFGVERRA 732

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V  EQR   KV+   L Y  G   F  +A + G++
Sbjct: 733 VDSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIE 764


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 52/301 (17%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN-------DRGYRI-----DLDLVLKL 209
           Y   D + T  L  RL+   D +  L  + Q I         R  R      D+ L  + 
Sbjct: 499 YAAEDADVTLRLHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQS 558

Query: 210 QELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           QE IAQ   +L++   ++ +    + S +Q  AL   LF   G+ ++  +     S  + 
Sbjct: 559 QE-IAQRLDELEQKAYEIAEQEFNMNSPKQLQAL---LFEKMGLPVIKKTPSGTPST-NE 613

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWS 321
             + +LA D  L +L      + KL +     L + ++S+ GR+  T      + TGR S
Sbjct: 614 EVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINSETGRVH-TSYHQAVTATGRLS 672

Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
                 QN+P R E    I                         R   +A +G K++  D
Sbjct: 673 STDPNLQNIPIRNEEGRRI-------------------------RQAFVAPHGYKIMAVD 707

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   + AF  G+DI+  T A+   T ID+VS EQR   K +   L 
Sbjct: 708 YSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLI 767

Query: 441 Y 441
           Y
Sbjct: 768 Y 768


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   IDK
Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE + Q + +
Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F  P++K
Sbjct: 692 IRQAFIAPQGYRIMAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFGLPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTSEQRRSAKAINFGLIY 769


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+
Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           ++ EQR   K +   L Y  G   F  ++   G+                  +QQF  ++
Sbjct: 757 ITSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRADAQKYMDLYFQRYPSVQQFMTDI 813

Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 814 REKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+   T ID+
Sbjct: 691 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIMGTTIDQ 750

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466
           VS EQR   K +   L Y  G   F  +A   G+                  + Q+ ++ 
Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQDYMNKYFERYPGVMQYMEDT 807

Query: 467 KSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           +ST++ + +            + +S +   +      A+   + GTA +++KKA
Sbjct: 808 RSTASEQGYVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 861


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   IDK
Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE + Q + +
Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   IDK
Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE + Q + +
Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   IDK
Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE + Q + +
Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 11/126 (8%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVV-ADLA 382
           P+  +      QT+ A  R  + +DP    + + ++    +R   + S G +++V AD +
Sbjct: 606 PKTHKIYSTFNQTVTATGRLSS-SDPNLQNIPVKTEMGREIRKVFVPSAGDRVLVDADYS 664

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++G++  I  F   +DI+  T ++ FN P+D VS+EQR+  K +   L Y 
Sbjct: 665 QIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNVPMDAVSREQRSHAKAINFGLIY- 723

Query: 443 GGAKVF 448
            G + F
Sbjct: 724 -GKQAF 728


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 136/314 (43%), Gaps = 46/314 (14%)

Query: 144 PYDCTRANHVQAWQLFGEYCKR-DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRI 201
           P+ CT+   V A   F E  +R D E  R+  +++ +PLS      W+L Q   D G  I
Sbjct: 461 PWCCTQVEAVAA--AFVEIRERLDAEGHRDTLEQVSLPLS------WVLGQMELD-GVAI 511

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           D + + K+ E   +   KL++ I ++   +  I SS+Q  A+      +  I        
Sbjct: 512 DSEDLGKMSEEFGERLAKLEKTIFEIAGREFNIASSKQLGAVLFDELELPVIKRTKTGYS 571

Query: 260 TLKSILSH-SNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSD-GRLRGTLQFYG 313
           T   +L   +  T+  K  I   L         +NT    L  AV+ D GR+  T Q   
Sbjct: 572 TNAEVLERLAGKTKHPKHTIAKYLLEHRKLAKLINTYTDVLQAAVNPDSGRIHATFQ--- 628

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
             +T   SG +   +  P  +R+                I  P G     VR   +   G
Sbjct: 629 --QTAGVSGRLITTE--PDLQRT---------------PIKTPEG---KRVRQAFVTRPG 666

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQRAI 431
            KL+ AD + IE R+LA  + +   ++AFA G D++  T A+ F      +KVS+EQR +
Sbjct: 667 YKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGGPEKVSREQRGV 726

Query: 432 GKVMELALGYQGGA 445
           GK++  A  Y  GA
Sbjct: 727 GKLVNFATIYGQGA 740


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   IDK
Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE + Q + +
Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A +G K+V AD + IE R++A ++ ++  +KAFA G+DI+  T A+ F   +++
Sbjct: 681 VRQAFVARDGYKIVAADYSQIELRIMAHLSQDNGLLKAFAEGKDIHQATAAEVFGLELEQ 740

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 741 VSTEQRRRAKAINFGLIY 758


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++ +   + AF+ G+DI+  T ++ F+ P+D+
Sbjct: 698 IRQAFIAQPGYKIVAADYSQIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDE 757

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 758 VTTEQRRSAKAINFGLIY 775


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 32/164 (19%)

Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341
           A  KLN+     L + +  DGR+  T     A RTGR S      QN+P R E   ++  
Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 618

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  R+  +A  G  LV AD + IE R+LA I G++   +A
Sbjct: 619 -----------------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           F NGEDI+ +T AK +  P  +V+   R+  K +   + Y  GA
Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGA 699


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 30/156 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     L+  +S DGR+ GT      + TGR S      QN+P +            
Sbjct: 586 KLNSTYAQGLTAYISEDGRIHGTFN-QTITATGRISSTDPNLQNIPMK------------ 632

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            L  G             +R   I  +G   V AD + IE RVLA ++ +     AF N 
Sbjct: 633 -LELGR-----------LIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLNH 680

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            DI+ TT ++ F+ PID+V+  QR   K +   + Y
Sbjct: 681 VDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVY 716


>gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes
           HL030PA1]
          Length = 112

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET SP PL K GV+ YAE     L    Y+ D  PV++ D      +P ++L
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL----------GIDIPSKRWICTSV 98
             L D  V   AHN+ FER+     L          G   PS+ W CT V
Sbjct: 61  AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQ-WRCTMV 109


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ +   + AF+ G+DI++ T A+ F  P+ +
Sbjct: 717 IRHAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNAFSEGQDIHLITAAEVFGLPVSQ 776

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 777 VSAQQRRSAKAINFGLIY 794


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 126/309 (40%), Gaps = 65/309 (21%)

Query: 161 EYCKRDVEAT---RELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           EY   D + T   + +F+  +P        +D E  L  +   +   G  +D+D      
Sbjct: 495 EYAVEDADVTWQLKNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDF----- 549

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSI 264
             + +  K LD DI +L   I + + +T+ L         LF    ID       T +  
Sbjct: 550 --LKEYSKTLDADIAQLETAIAQQAGETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYA 607

Query: 265 LSHSNITQLAK------DLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGT-LQFYG 313
            S   +   A       D++    + +L S+    L L    E   S GR+  T +Q   
Sbjct: 608 TSEEVLAPFAAKHKIVADILEWRQVQKLKSTYVDALPL----EVNKSTGRVHTTYMQTVA 663

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  TGR S      QN+P                     I  P G     VR   IA N 
Sbjct: 664 A--TGRLSSNNPNLQNIP---------------------IRTPRG---QQVRKAFIARNP 697

Query: 374 KK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              L+ AD + IE R++A ++ E   I++F +GEDI+  T AK FN P+++V++EQR+  
Sbjct: 698 DYVLLSADYSQIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPLEEVTREQRSHA 757

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 758 KTVNFGIIY 766


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 754 VSSEQRRRAKAVNFGLIY 771


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ +   + AFA G+DI+  T  + F  P+DK
Sbjct: 693 IRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATAGEVFGLPLDK 752

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 753 VTNEQRRSAKAINFGLIY 770


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I + G     AD + IE R++A ++G++  I+AF  G DI+  T AK +  PID+
Sbjct: 682 IRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIEAFIEGHDIHAATAAKIYKKPIDE 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V++++R   K     + Y  G  VF
Sbjct: 742 VTRDERTKAKRANFGIIY--GITVF 764


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G ++V AD + IE R++A ++G+   + AFA G DI+  T A+ F   +D 
Sbjct: 689 IRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 748

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 749 VSGEQRRSAKAINFGLIY 766


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 726 VSSEQRRRAKAVNFGLIY 743


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 646 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 705

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 706 VSSEQRRRAKAVNFGLIY 723


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   +  DG++         + TGR S      QN+P + E  +EI         R   I
Sbjct: 596 LKGVIEEDGKIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGKEI---------RKIFI 645

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
            D         R C+I S       AD + IE RVLA I+G++  I AF N  DI+  T 
Sbjct: 646 PDN--------RDCVILS-------ADYSQIELRVLAHISGDENLINAFINHNDIHTKTA 690

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ FN P+ +V+  QR+  K +   + Y  G
Sbjct: 691 SEVFNVPLGEVTSTQRSNAKAVNFGIVYGIG 721


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ +   ++AF+NG DI+  T A+ F  P+D+
Sbjct: 689 IRQAFIAPEGYHILAADYSQIELRIMAHLSRDAGLLRAFSNGLDIHRATAAEVFGLPLDR 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTTEQRRSAKAINFGLIY 766


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F  P++K
Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDEGLLAAFAAGKDIHRATAAEVFGLPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 754 VSSEQRRRAKAVNFGLIY 771


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 650 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 709

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 710 VSSEQRRRAKAVNFGLIY 727


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 726 VSSEQRRRAKAVNFGLIY 743


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GK 374
           TGR S      QN+P R ER  +I                         R   +A +   
Sbjct: 686 TGRLSSNNPNLQNIPIRTERGRQI-------------------------RKAFVARDENY 720

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE R++A ++GE+  I AF NGEDI+  T AK F+  +++VS+EQR+  K 
Sbjct: 721 TLISADYSQIELRIIAALSGEENMIAAFQNGEDIHRATAAKVFDVALEEVSREQRSNAKT 780

Query: 435 MELALGY 441
           +   + Y
Sbjct: 781 VNFGIIY 787


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 754 VSSEQRRRAKAVNFGLIY 771


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 726 VSSEQRRRAKAVNFGLIY 743


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 690 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 749

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 750 VSSEQRRRAKAVNFGLIY 767


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 44/272 (16%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           ER L  +   +   G ++D D + ++    AQ+   L+++I ++  G   +      L  
Sbjct: 534 ERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQKMAGLEDEIQEMA-GRPFNVGSPKQLGE 592

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI--------------LNRLASSGSAI 289
            LF   G+++ D  + +     ++S    + +DL               L++L S+ +  
Sbjct: 593 ILFDEMGLEMPDGKKPSTGKTGAYSTGADVLEDLATLHDMPRRILDWRQLSKLKSTYTDA 652

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           L+ +  +E     GR+  +    GA+ TGR +      QN+P   RSEE           
Sbjct: 653 LQEHINAET----GRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE----------- 694

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           G  I           R   +A +GK +V  D + IE R+LA IAG D   +AF +G DI+
Sbjct: 695 GRRI-----------REAFVAEDGKVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIH 743

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             T ++ F+ P+D+++ + R   K +   + Y
Sbjct: 744 AMTASEMFDVPLDEMTPDVRRQAKAINFGVIY 775


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 754 VSSEQRRRAKAVNFGLIY 771


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G +++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F  P+++
Sbjct: 690 IRQAFVAPEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQ 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRSAKAINFGLIY 767


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 754 VSSEQRRRAKAVNFGLIY 771


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 726 VSSEQRRRAKAVNFGLIY 743


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 726 VSSEQRRRAKAVNFGLIY 743


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 33/179 (18%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGC 323
           + +LA+   L RL     ++ KL     + L + V  +DGR+  T    GA+ TGR S  
Sbjct: 583 LEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSS 641

Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               QN+P R E S  I                         R   +A  G +L+ AD +
Sbjct: 642 DPNLQNIPVRTELSRRI-------------------------RQAFVAPAGARLLSADYS 676

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R+LA  + +   ++AF + ED++  T A+ F    ++V+ +QR I KV+   + Y
Sbjct: 677 QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAY 735


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 754 VSSEQRRRAKAVNFGLIY 771


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 33/179 (18%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGC 323
           + +LA+   L RL     ++ KL     + L + V  +DGR+  T    GA+ TGR S  
Sbjct: 583 LEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSS 641

Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               QN+P R E S  I                         R   +A  G +L+ AD +
Sbjct: 642 DPNLQNIPVRTELSRRI-------------------------RQAFVAPAGARLLSADYS 676

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R+LA  + +   ++AF + ED++  T A+ F    ++V+ +QR I KV+   + Y
Sbjct: 677 QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAY 735


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L +AV  DGR+  T     AS TGR S      QN+P                    
Sbjct: 611 LDGLIKAVGDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP-------------------- 649

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
            +  P G     +RS  +   G K L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 650 -VRTPAGRK---IRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHN 705

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+ P+D+V+ E R   K M   L Y
Sbjct: 706 FVGSKVFDVPVDQVTPELRRRVKAMSYGLVY 736


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RSC  A +G+KL++AD + IE RV A I+G+     A   GED++  T +   + P+ +V
Sbjct: 420 RSCFTAPDGRKLILADYSQIELRVAAQISGDSRMKSACQKGEDLHALTASLISSIPVSQV 479

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +K QR   K +   L +  GA+  K  A
Sbjct: 480 TKAQRQAAKAVNFGLIFGMGAEGLKQYA 507


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 611 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 670

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 671 VSSEQRRRAKAVNFGLIY 688


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 148/351 (42%), Gaps = 58/351 (16%)

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            LAL + +H        A +AR  K  ++    D  RA         G Y   D +AT  
Sbjct: 424 ALALEYLDHRMI---SYAEVARSGKCELNFSEVDLDRA---------GPYSCEDADATYL 471

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L + L+P          L D E  L  +   +   G ++D+DL+ +L     ++  +L+ 
Sbjct: 472 LHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEA 531

Query: 223 DIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            I +   G   I S +Q   L   LF   G+ +   ++G      +   + +LA++  + 
Sbjct: 532 QIHEHCGGPFNINSPKQ---LGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA 588

Query: 281 RLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           RL     +I KL +T ++A+      + GR+  +      + TGR S      QN+P   
Sbjct: 589 RLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYN-QAVTSTGRLSSSDPNLQNIPI-- 645

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
           R EE          RG             +R   IA  G  ++ AD + IE RVLA ++G
Sbjct: 646 RGEE---------GRG-------------IRRAFIAEPGSLMLSADYSQIELRVLAHLSG 683

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           +    +AFA GEDI+  T ++ F    + V+ E R   KV+   + Y  GA
Sbjct: 684 DRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGA 734


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 596 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 715 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 750

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810

Query: 440 GYQGG 444
            Y  G
Sbjct: 811 IYGMG 815


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+
Sbjct: 77  IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 136

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 137 VSSEQRRRAKAVNFGLIY 154


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + +++D GR+  +    GA+ TGR +      QN+P   RSEE             
Sbjct: 642 DALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIPI--RSEE------------- 685

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IAG D    AF +G+DI+  
Sbjct: 686 ---------GRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAFKDGQDIHAA 736

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P+++++ + R   K +   + Y
Sbjct: 737 TASEMFNVPLEEMTPDVRRQAKAINFGVIY 766


>gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I   G K+V AD + IE R++A ++ +   +KAF+ G+DI+  T A+ FN  +++
Sbjct: 688 VRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVFNVSLEE 747

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 748 VTTEQRRNAKAINFGLIY 765


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 596 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 715 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 750

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810

Query: 440 GYQGG 444
            Y  G
Sbjct: 811 IYGMG 815


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D+
Sbjct: 695 IRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQ 754

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 755 VTSDQRRSAKAINFGLIY 772


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G K+V AD + IE R++A ++ +   + AFA G+DI+  T ++ F  P+D+
Sbjct: 709 IRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 768

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 769 VTAEQRRSAKAINFGLIY 786


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 38/206 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+   T ID+
Sbjct: 689 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTIDQ 748

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 749 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQDYMNKYFERYPGVMQYMEDT 805

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509
             A +   +++  +      PE               A+   + GTA +++KKA      
Sbjct: 806 RSAAADQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 865

Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534
           W +A+ QG ++L   + +     V+E
Sbjct: 866 WIQAEGQGRVKLLMQVHDELVFEVEE 891


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D 
Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 742 VTTEQRRRAKAVNFGLIY 759


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A +G KL+ AD + +E R++A I+ ++  +KAF  G DI+ +T ++ F  P+ +
Sbjct: 669 VRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAFKEGADIHRSTASEVFGVPLSE 728

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V   QR   K +   L Y  GA
Sbjct: 729 VDDSQRRAAKAINFGLIYGMGA 750


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA++G KLV AD + IE RVLA +A      +AFA+G DI+  T ++ FN P++ 
Sbjct: 735 IRTAFIAADGHKLVSADYSQIELRVLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +    R   K +   + Y  G   F  +A++ G+D  + S  +K
Sbjct: 795 MDPSIRRQAKAINFGIIY--GISAFG-LANNLGIDRGEASDYIK 835


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 53/251 (21%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  + E   SDGRL G      A+ TGR S      QN+P   R+E              
Sbjct: 546 LLPMEEGRGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIP--ARTE-------------- 588

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                LGL    VR C +A  G  L+ AD + IE R+LA  +G+ +  +AF+ GEDI+  
Sbjct: 589 -----LGL---LVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHAR 640

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY------------------QGGAKVFKTMAS 453
           T A  F  P   V+ E R   K +   + Y                  QG    + ++ +
Sbjct: 641 TAALLFGEP---VTSESRRRAKTINFGILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVA 697

Query: 454 HCGLDLQQFSQNVKSTSTFEDW-------EQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             G   ++  +  + T              +  S +  +++     AV   L G+A +LV
Sbjct: 698 GVGPYFEKIREEARRTGRIRTLLGRIRPIPEIRSDNRNVREYGERMAVNSVLQGSAADLV 757

Query: 507 KKAWRAKHQGV 517
           KKA     Q V
Sbjct: 758 KKAMVDLSQAV 768


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 30/156 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     L   +SSDGR+ GT      + TGR S      QN+P +            
Sbjct: 594 KLNSTYAIGLGSFISSDGRIHGTFN-QTITATGRISSTDPNLQNIPMR-----------M 641

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            L R              +R   I  +G   V AD + +E RVLA ++ +     AF N 
Sbjct: 642 ELGR-------------LIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNN 688

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            DI+ TT ++ F  PID+V+  QR   K +   + Y
Sbjct: 689 IDIHSTTASEVFGVPIDEVTPLQRRHAKAVNFGIVY 724


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D 
Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 742 VTTEQRRRAKAVNFGLIY 759


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   +KAFA G+DI+  T A+ F T  D 
Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 742 VTTEQRRRAKAVNFGLIY 759


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 31/178 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
           + Q+A D  L RL      + KL      TL   +  + GR+  +    GA+ TGR S  
Sbjct: 597 LEQMADDYALPRLILEHRGLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAA-TGRLSSS 655

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+E                      A   +R   IA  G +L+ AD + 
Sbjct: 656 EPNLQNIPV--RTE----------------------AGRRIRRAFIAEEGHQLLAADYSQ 691

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE R++A ++ +   +KAFA G+DI+  T A+ F    ++VS +QR   K +   L Y
Sbjct: 692 IELRIMAHLSQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINFGLIY 749


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E ++ D GR+  +    GA+ TGR S      QN+P   RSEE             
Sbjct: 648 DALQEHINKDTGRVHTSYVISGAN-TGRLSSTDPNLQNIPV--RSEE------------- 691

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK +V  D + IE R+LA +A  D   +AF +G+DI+  
Sbjct: 692 ---------GRRIREAFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAFRDGQDIHAM 742

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P+D+++ E R   K +   + Y
Sbjct: 743 TASEMFNVPMDEMTSEIRRQAKAINFGVIY 772


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL   +  +GR+  +     ++ TGR S      QN+P   R+EE              
Sbjct: 682 DTLPHHMDENGRIHTSFSM-ASTTTGRLSSSEPNLQNIPV--RTEE-------------- 724

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R+  +A  GKKL+ AD + IE R+LA IA       AF NG DI+  T
Sbjct: 725 --------GRAIRTAFVAPKGKKLLSADYSQIELRILAHIADIPQLKDAFQNGVDIHAMT 776

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            ++ FN P++ +    R   K +   + Y  G   F  +A+   +  ++  Q +K
Sbjct: 777 ASEMFNVPVEGMEPSVRRRAKAINFGIIY--GISAF-GLANQLAIPREEAGQYIK 828


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 529 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 588

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 589 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 647

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 648 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 683

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 684 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 743

Query: 440 GYQGG 444
            Y  G
Sbjct: 744 IYGMG 748


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++D R+  T      ++TGR S      QN+P   R+EE           G  I 
Sbjct: 638 LHKYIAADHRIHTTFH-QTLTQTGRLSSSDPNLQNIP--ARTEE-----------GRRI- 682

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     R+  IA+ G  L+ AD + IE R+LA ++G+   +KAFA  EDI+  T A
Sbjct: 683 ----------RAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAA 732

Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGY 441
           + F+  P+D V+ E R +GK +  ++ Y
Sbjct: 733 RVFHMDPVD-VTSEHRRVGKTINFSIVY 759


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 45/207 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 647

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +   G  +L+ A
Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGEGYAELMTA 683

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   I+AF  GED++    ++AF+ PID+V+ E R   K M   L
Sbjct: 684 DYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGL 743

Query: 440 GY----QGGAKVFKTMASHCGLDLQQF 462
            Y     G A+  K       + ++Q+
Sbjct: 744 AYGLSAYGLAQQLKISTEEAKVQMEQY 770


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 602 LQHLLTHRDVTRLK---------------VTVDGLLASVASDGRIHTTFNQTIAA-TGRL 645

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +  +G  +L+ A
Sbjct: 646 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYSELMTA 681

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF  PI +V+ E R   K M   L
Sbjct: 682 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIGEVTAELRRRVKAMSYGL 741

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 742 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 768


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 41/182 (22%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L  +V+ DGR+  T     A+ TGR 
Sbjct: 595 LQHLLAHRDVTRLK---------------VTVDGLLNSVADDGRIHTTFNQTIAA-TGRL 638

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  A   +R   +  +G  +L+ A
Sbjct: 639 SSTEPNLQNIP-------IRTD-----------------AGRQIRDAFVVGDGYSELMTA 674

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 675 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 734

Query: 440 GY 441
            Y
Sbjct: 735 AY 736


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L++ +S DGR+ GT      + TGR S      QN+P R E  +                
Sbjct: 611 LTQYISEDGRIHGTFN-QTITATGRISSTEPNLQNIPIRMEMGK---------------- 653

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +  +G   + AD + IE R+LA ++G++  I+A+ +  DI+  T 
Sbjct: 654 ---------AIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATA 704

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A+ F  P+++V+ EQR   K +   + Y
Sbjct: 705 AQVFGVPLEEVTDEQRRNAKAVNFGIIY 732


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   I+S+   ++V AD + IE RVLA I+ ++  I +F N EDI+  T ++ FN PI
Sbjct: 647 IIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTRTASEVFNVPI 706

Query: 422 DKVSKEQRAIGKVMELALGY 441
           D+V+ E R+  K +   + Y
Sbjct: 707 DEVTSEMRSSAKAVNFGIVY 726


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 25/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L EA+  DGR+  T    GA+ TGR S      QN+P +                  
Sbjct: 577 IDGLIEAIGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTD---------------- 619

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                   A   +R+   A  G+ L+ AD + IE RV+A ++ ++  I+A+ +GED++  
Sbjct: 620 --------AGRRIRAAFHAGWGETLLTADYSQIEMRVMAHLSQDEGLIEAYKSGEDLHNY 671

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             ++ F+ P+D+V+ E R   K +   L Y
Sbjct: 672 VGSRVFDVPVDQVTPELRRRVKALSYGLVY 701


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F T  + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ ++ +  + L+ AD + IE R++A ++G+   I AFA+GED++    A+AF  P+D+V
Sbjct: 693 RAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTFVAAQAFGIPVDEV 752

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
             E R   K M   L Y  G   F  +A   G+  ++  + +++
Sbjct: 753 DPELRRRIKAMSYGLAY--GLSAFG-LAGQLGIHPEEAREQMEA 793


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           LA   VR   +A     LV AD + IE R++A ++ +    +AFA GEDI+  T A+ F 
Sbjct: 660 LAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATAAEVFG 719

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            P+ +V+ EQR   K +   L Y  G  VF  +AS+ G+
Sbjct: 720 VPLPEVTSEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 25/153 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ + + +  DG++  T Q    ++TGR S      QN+P   R+EE             
Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   + S G  L+ AD + IE RVLA +A ++  I AF +G DI+  
Sbjct: 633 ---------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRK 683

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           T ++ F    DKV+  QR+  K +   + Y  G
Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF NGED++  T A+ F T  + 
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   K +   L Y  G      +A   G+D
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 41/182 (22%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L                + ++ L  +V+ DGR+  T     A+ TGR 
Sbjct: 595 LQHLLAHRDVTRLK---------------VTVDGLLNSVADDGRIHTTFNQTIAA-TGRL 638

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T                  A   +R   +  +G  +L+ A
Sbjct: 639 SSTEPNLQNIP-------IRTD-----------------AGRQIRDAFVVGDGYSELMTA 674

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 675 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 734

Query: 440 GY 441
            Y
Sbjct: 735 AY 736


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 38/206 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+   T ID+
Sbjct: 691 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIMGTTIDQ 750

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQDYMNTYFERYPGVMQYMEDT 807

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509
             A +   +++  +      PE               A+   + GTA +++KKA      
Sbjct: 808 RSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 867

Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534
           W +A+  G ++L   + +     VQE
Sbjct: 868 WIQAEGDGRVKLLMQVHDELVFEVQE 893


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L + V+ DGR+  T     A+ TGR 
Sbjct: 610 LEHLLAHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 653

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +              + G  I D            ++      L+ AD
Sbjct: 654 SSTEPNLQNIPVR-------------TDAGRQIRD----------GFVVGEGYDSLLTAD 690

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G++  I+AF  GED++    A+AF  PI++V+ E R   K M   L 
Sbjct: 691 YSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLA 750

Query: 441 Y 441
           Y
Sbjct: 751 Y 751


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++K
Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTHEQRRSAKAINFGLIY 769


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 44/81 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF NGED++  T A+ F T  + 
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           VS EQR   K +   L Y  G
Sbjct: 750 VSPEQRRYAKTINFGLIYGMG 770


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++K
Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A I+G+   + AF +GED++  T ++ F     +
Sbjct: 688 IREAFIAPPGSSIVSADYSQIELRIMAHISGDASLMAAFEHGEDVHRATASEIFGVTRQE 747

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR I KV+   L Y  G   F  +AS+ G+
Sbjct: 748 VTSEQRRIAKVINFGLIY--GMSAFG-LASNLGI 778


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++K
Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++K
Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++K
Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 132/304 (43%), Gaps = 46/304 (15%)

Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           G Y   D +AT  L + L+P          L D E  L  +   +   G ++D+DL+ +L
Sbjct: 459 GPYSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKEL 518

Query: 210 QELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                ++  +L+  I +   G   I S +Q   L   LF   G+ +   ++G      + 
Sbjct: 519 SAGFGKQLIELEAQIHEHCGGPFNINSPKQ---LGEMLFERMGLAVGKKTKGKTGWSTNV 575

Query: 268 SNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWS 321
             + +LA++  + RL     +I KL +T ++A+      + GR+  +      + TGR S
Sbjct: 576 EELERLAEEHEVARLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYN-QAVTSTGRLS 634

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P   R EE          RG             +R   IA  G  ++ AD 
Sbjct: 635 SSDPNLQNIPI--RGEE---------GRG-------------IRRAFIAEPGSLMLSADY 670

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++G+    +AFA GEDI+  T ++ F    + V+ E R   KV+   + Y
Sbjct: 671 SQIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIY 730

Query: 442 QGGA 445
             GA
Sbjct: 731 GQGA 734


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++K
Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L   + +DGR+  T      +RTGR S      QN+P   R++E                
Sbjct: 602 LRSEIGADGRIHATFN-QAVARTGRISSERPNLQNIP--VRTDE---------------- 642

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     R   +A+ G  LV AD + IE RVLA ++G++  ++  +   D++    A
Sbjct: 643 ------GKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAA 696

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F  P ++V+ +QR++ K++   L Y
Sbjct: 697 RVFGVPAERVTPQQRSVAKMVTYGLSY 723


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I S G KLV AD + IE R++A ++G+   + AFA G+DI+  T A+ F   ID 
Sbjct: 681 IRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVAIDA 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K +   L Y
Sbjct: 741 VTTDMRRSAKAINFGLIY 758


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++K
Sbjct: 510 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 569

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 570 VTTEQRRSAKAINFGLIY 587


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++ +   + AFA G+DI+  T ++ F  P+++
Sbjct: 709 IRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLEE 768

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 769 VTSEQRRSAKAINFGLIY 786


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++  I+ ++  ++AFA+GEDI+  T A+ F     +
Sbjct: 376 IREAFVAPPGSKIVSADYSQIELRIMLHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 435

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR I KV+   L Y  G   F  +AS+ G+
Sbjct: 436 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 466


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   ++AF++G DI+  T A+ F  P+D+
Sbjct: 705 IRQAFIAPEGYRILAADYSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDR 764

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 765 VTTEQRRSAKAINFGLIY 782


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 30/175 (17%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  +  + K   LN+L S+      L+ + E +  DGR+R + +    + TGR S     
Sbjct: 582 HEIVDYILKYRSLNKLIST-----YLDGILEYIMDDGRVRTSFK-QMITATGRLSSVDPN 635

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P   RSEE           G+ I           R   +A   K  + AD + IE 
Sbjct: 636 LQNIPI--RSEE-----------GKNI-----------RKVFVADKNKVFIDADYSQIEL 671

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           RVLA ++ +   I +F N  DI+  T ++ F  PI++V+  QR   K +   + Y
Sbjct: 672 RVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNFGIVY 726


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   I  N    L+ AD + IE R++A ++GE+  I AF N +DI+ +T AK FN  +
Sbjct: 707 LIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIAAFQNNQDIHKSTAAKVFNVAL 766

Query: 422 DKVSKEQRAIGKVMELALGY 441
           + V+KEQR+  K +   + Y
Sbjct: 767 EDVTKEQRSNAKTVNFGIIY 786


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 14/165 (8%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    AS G+ LVVAD + IE R+LA ++ E   ++AF NGEDI+  T A+ F+   + 
Sbjct: 600 IRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPES 659

Query: 424 VSKEQRAIGKVMELAL-----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           V+ E R   K++   +     GY    ++     +     +Q++ +     + F     A
Sbjct: 660 VTPELRRRAKMVNFGILYGISGYGLATRLGNVHPAEADRYIQRYFERHPRVTEFIRKSLA 719

Query: 479 ESHH------LWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG 516
           E+        L+ + +Y PE   K+K +    E +  A+ A+ QG
Sbjct: 720 EAEELGYATTLFGRRRYVPELRNKNKNVRKLGERI--AFNARVQG 762


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 26/162 (16%)

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +L LN   E V   DGR+     F   S TGR S      Q +PR+              
Sbjct: 320 LLFLNKWLEKVHPLDGRVHPQY-FQIPSSTGRISSRHPNAQQIPRR-------------- 364

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G  +  +R     + GK+ V ADL+ IE R++A I+G++   +AF  G D
Sbjct: 365 ----------GDDAPAIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFIKGID 414

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           ++  T ++   TP ++V+  QR   K M   L Y G AK  +
Sbjct: 415 LHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQ 456


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++G+   + AFA G+DI+  T A+ F   ++ 
Sbjct: 693 IRQAFIAPQGYKIVAADYSQIELRIMAHLSGDKGLLTAFAAGKDIHRATAAEVFGLKLED 752

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 753 VTSEQRRSAKAINFGLIY 770


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 30/177 (16%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA D  L R+     ++ KL +     L E +   GR+  T      + TGR S   
Sbjct: 612 LQELALDYELPRIIMEHRSLSKLKSTYTDKLPEMIQKTGRIH-TSYHQAVTATGRLSSTD 670

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P   R+ E                         +R   IA  G KL+ AD + I
Sbjct: 671 PNLQNIPI--RTAE----------------------GRRIRQAFIAPEGYKLIAADYSQI 706

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           E R+++ ++ +   ++AFAN +D++  T A+ F   +D+V+ EQR   K +   L Y
Sbjct: 707 ELRIMSHLSQDPGLLEAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAINFGLIY 763


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     L+ AD + IE R+LA I  E   ++AF  GEDI+  T A  F+ P+++
Sbjct: 795 IRRAFIADPSYVLLTADYSQIELRILANITNEPRLVEAFNQGEDIHTITAASLFSVPVEE 854

Query: 424 VSKEQRAIGKVMELALGY 441
           V+++QR + K +  A+ Y
Sbjct: 855 VTRDQRRLAKTVVYAVLY 872


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K+V AD + IE R++A ++ +D  ++AFA+G+DI+  T A+  N   + 
Sbjct: 670 IRQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMNITPEA 729

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 730 VTSEQRRNAKAINFGLIY 747


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 32/178 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA D  + ++      + KLN+     L+  +  D R+ GT      + TGR S   
Sbjct: 285 LDKLAPDYPVVQMILDYRQLTKLNSTYAEGLAVYIGPDERIHGTFN-QTITATGRISSTE 343

Query: 325 FQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
              QN+P R E   EI                         R   +  +G   + AD + 
Sbjct: 344 PNLQNIPVRMELGREI-------------------------RKIFVPEDGYVFIDADYSQ 378

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE RVLA ++G++  I A+ + EDI+  T ++ F+TP+D+V+  QR   K +   + Y
Sbjct: 379 IELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVY 436


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KLV AD + +E RVLA ++G++  I+AF  G DI+  T ++ F  P D+
Sbjct: 670 LRRVFVAGQGSKLVDADYSQVELRVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDE 729

Query: 424 VSKEQRAIGKVMELALGY 441
           VS E R+  K +   + Y
Sbjct: 730 VSAELRSAAKAVNFGIIY 747


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F T  D 
Sbjct: 682 IRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 742 VTSEQRRRAKAVNFGLIY 759


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 25/153 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ + + +  DG++  T Q    ++TGR S      QN+P   R+EE             
Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   + S G  L+ AD + IE RVLA +A ++  I AF +G DI+  
Sbjct: 633 ---------GRLIRKAFVPSGGNVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRK 683

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           T ++ F    DKV+  QR+  K +   + Y  G
Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALN 348
           + ++ L +AV+ DGR+  T     A+ TGR S      QN+P R +   EI         
Sbjct: 625 VTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGREI--------- 674

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           R   +   G   L+ AD + IE R++A ++G++  I+AF  GED
Sbjct: 675 ----------------RDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 718

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++    ++AF  PI++V+ E R   K M   L Y
Sbjct: 719 LHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 752


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF NGED++  T A+ F T  + 
Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   K +   L Y  G      +A   G+D
Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V  DGR+  T     AS TGR S      QN+P +  S             G 
Sbjct: 578 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTES-------------GR 623

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           TI           RS  I   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 624 TI-----------RSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYKEGEDLHN 672

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+DKV+ E R   K M   L Y
Sbjct: 673 YVGSRVFDVPVDKVTSELRRRVKAMSYGLVY 703


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALN 348
           + ++ L +AV+ DGR+  T     A+ TGR S      QN+P R +   EI         
Sbjct: 625 VTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGREI--------- 674

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           R   +   G   L+ AD + IE R++A ++G++  I+AF  GED
Sbjct: 675 ----------------RDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 718

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++    ++AF  PI++V+ E R   K M   L Y
Sbjct: 719 LHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 752


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 44/81 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF NGED++  T A+ F T  + 
Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           VS EQR   K +   L Y  G
Sbjct: 750 VSPEQRRYAKTINFGLIYGMG 770


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 44/81 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF NGED++  T A+ F T  + 
Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           VS EQR   K +   L Y  G
Sbjct: 750 VSPEQRRYAKTINFGLIYGMG 770


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    P+D+
Sbjct: 683 IRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLPLDQ 742

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 743 VSSEQRRRAKAINFGLIY 760


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A +D  + AF +G D++  T A+ F  P++ 
Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHGLDVHRATAAEVFGVPLED 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR   K +   L Y  G   F  +A   G++
Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +++DGR+ GT      + TGR S      QN+P   R+E         L R     
Sbjct: 597 LAGFIAADGRIHGTFN-QTITATGRISSTDPNLQNIPV--RTE---------LGR----- 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   IA  G  L+ AD + IE RVLA ++G++  I AF +  DI+  T +
Sbjct: 640 --------LLRKVFIAKEGYVLIDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTAS 691

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+ P D+V+  QR   K +   + Y
Sbjct: 692 QVFHIPFDEVTPLQRRNAKAVNFGIVY 718


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AFA+G D++  T A+ F   ID 
Sbjct: 694 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATAAEVFGRTIDT 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 754 VSGDERRAAKAINFGLMY 771


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 48/231 (20%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++ +   ++AF+ G DI+  T ++ F+  +D+
Sbjct: 696 IRQAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDE 755

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           V+  QR   K +   L Y     G AK  K   S   L + ++        T+    + +
Sbjct: 756 VTTNQRRSAKAINFGLIYGMSAFGLAKQLKISRSDAKLYMDKYFHRYPGVLTYMQTTRDK 815

Query: 480 SHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKK------AWRA 512
           +         L  + Q P                A+   + GTA +++KK      AW  
Sbjct: 816 AREQGFVETILGRRLQLPHINSRNGILKKASERAAINAPMQGTAADIIKKAMLDVAAWVE 875

Query: 513 KH-----QGVLQLWKDL--------TEGFACVVQEGGSISARRVA-NVPRL 549
           K      Q ++Q+  +L         E + C++QE   I A+ V  +VP L
Sbjct: 876 KQAPSQVQLLMQVHDELVFCIKEDQVENYTCIIQE---IMAKAVILDVPLL 923


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALN 348
           + ++ L +AV+ DGR+  T     A+ TGR S      QN+P R +   EI         
Sbjct: 597 VTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGREI--------- 646

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           R   +   G   L+ AD + IE R++A ++G++  I+AF  GED
Sbjct: 647 ----------------RDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 690

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++    ++AF  PI++V+ E R   K M   L Y
Sbjct: 691 LHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 724


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 49/233 (21%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  +V+ DGR+R T Q   A+ TGR S      QN+P R +   +I              
Sbjct: 617 LLRSVADDGRIRTTFQQTIAA-TGRLSSADPNLQNIPIRTDAGRQIR------------- 662

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      R+ ++      L+ AD + IE R++A ++G++  I AF +GED++    
Sbjct: 663 -----------RAFVVGPGYATLLTADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVG 711

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           ++ F  P D+V+   R+  K M   L Y              GL     SQ +       
Sbjct: 712 SRVFGVPTDEVTPTMRSKIKAMSYGLAY--------------GLSSYGLSQQLA------ 751

Query: 474 DWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
             E +E+  L M D +  F  V+D L G   +     + A   G  +   DLT
Sbjct: 752 -IEVSEAAAL-MTDYFERFGGVRDYLTGVVDQARATGYTATVLGRRRYLPDLT 802


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AFA+G D++  T A+ F   ID 
Sbjct: 694 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATAAEVFGRTIDT 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 754 VSGDERRAAKAINFGLMY 771


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 44/81 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA +G K++ AD + IE R++A ++ +   + AF N EDI+  T  + FN     
Sbjct: 664 VREAFIAPDGSKILSADYSQIELRIMAHLSKDKRLVAAFKNNEDIHTITAGEIFNIDNSA 723

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           VS EQR   KV+   L Y  G
Sbjct: 724 VSSEQRRYAKVINFGLIYGMG 744


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++ +    KAFA G D++ +T A+ F T ++ 
Sbjct: 669 IRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGLQKAFAEGLDVHKSTAAEVFGTALEN 728

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 729 VSSEQRRSAKAINFGLIY 746


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 41/182 (22%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 647

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +  +G  +L+ A
Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYSELMTA 683

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF  PI++V+ E R   K M   L
Sbjct: 684 DYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAELRRRVKAMSYGL 743

Query: 440 GY 441
            Y
Sbjct: 744 AY 745


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 46/66 (69%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ E+  ++AF NGEDI+ +T +K F+ P+++V++EQR+  K +
Sbjct: 722 LLAADYSQIELRIIAALSQEETMMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTV 781

Query: 436 ELALGY 441
              + Y
Sbjct: 782 NFGIIY 787


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ +   + AFA+ +DI+  T A+ F   +DK
Sbjct: 689 IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVSLDK 748

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 749 VSGEQRRSAKAINFGLIY 766


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 61/237 (25%)

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P   RSEE                         +R+  IA  
Sbjct: 627 AVTATGRLSSSEPNLQNIPI--RSEE----------------------GRLIRTAFIAPE 662

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              ++ AD + IE R++A ++ ++  +KAFANG D++  T ++ F  P+++++ EQR   
Sbjct: 663 DNIILAADYSQIELRIMAHLSQDENLLKAFANGWDVHAATASEIFQIPLEEINNEQRRRA 722

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQ-------FSQNVKSTSTFEDWEQAESHH--- 482
           K +   L Y  G   F  +A   G++ Q        + Q       + +  + ++HH   
Sbjct: 723 KAINFGLIY--GMSSFG-LAKQIGVERQDAQYYIDTYFQRYPKVLEYMNRTRQQAHHQGY 779

Query: 483 ------------------LWMQDQYPEFAVKDKLIGTACELVKKA------WRAKHQ 515
                             L  Q      A+   + GTA +++K A      W+  H+
Sbjct: 780 VETLFGRRLYLPEINARNLMRQKAAERTAINAPMQGTAADIIKNAMICIAKWQNSHE 836


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ +   + AFA+ +DI+  T A+ F   +DK
Sbjct: 689 IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVSLDK 748

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 749 VSGEQRRSAKAINFGLIY 766


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 33/178 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G+ +  AD + IE R++A I+G++  + AF  G D++  T A+ F   +D+
Sbjct: 683 VREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHAFREGLDVHRATAAEVFGVALDQ 742

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVF--KTMASHCGLD--------LQQFSQNVKST 469
           VS EQR   KV+   L Y     G AK    +T A+   +D        ++Q+ +  K+ 
Sbjct: 743 VSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDRYFQRYPGVKQYMEETKAQ 802

Query: 470 STFEDW-EQAESHHLWMQDQYPEF--------------AVKDKLIGTACELVKKAWRA 512
           +    + E      L++    PE               A+   + GTA +L+KKA  A
Sbjct: 803 AKARGYVETVFGRRLYL----PEINSPNGPRRGAAERAAINAPMQGTAADLIKKAMVA 856


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AFA+G D++  T A+ F   ID 
Sbjct: 694 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATAAEVFGRTIDT 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 754 VSGDERRAAKAINFGLMY 771


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G     AD + IE R++A ++G+   I+AF  G+DI+  T +K +  P+++
Sbjct: 693 IRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIEAFQKGQDIHAATASKIYKVPLEE 752

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A    +D ++  + +     FE++   + +
Sbjct: 753 VTREQRSKAKTANFGIIY--GISVF-GLAERLNVDRKEAKELID--GYFENYPHVKEY 805


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A ++ ++  I AFA G+DI+  T A+ F   + +
Sbjct: 714 IRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGE 773

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 774 VTSEQRRSAKAINFGLIY 791


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A ++ ++  I AFA G+DI+  T A+ F   + +
Sbjct: 714 IRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGE 773

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 774 VTSEQRRSAKAINFGLIY 791


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K+V AD + IE R++A ++ ++  I AFA G+DI+  T A+ F   + +
Sbjct: 714 IRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGE 773

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 774 VTSEQRRSAKAINFGLIY 791


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 40/257 (15%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVD 255
           G+++D D + ++ E    E K L+++I KL   D  I+S +Q   +      +  I    
Sbjct: 498 GFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAGEDFNIKSPKQLGKILFEKLDLPVIKKTK 557

Query: 256 MSEGTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
               T   +L     SH  I+++     + +L S+      +  L   +  DG++  +  
Sbjct: 558 TGYSTNAEVLEKLKDSHPIISKIIDYRQITKLDSTY-----VEGLKHVIDEDGKIHSSFN 612

Query: 311 FYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               + TGR S      QN+P + E   EI                         R   +
Sbjct: 613 -QTVTTTGRLSSTEPNLQNIPIKHEMGREI-------------------------RKVFV 646

Query: 370 ASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           A+N + ++  AD + IE RVLA IA ++  I AF + +DI+  T ++ F  P+++V+   
Sbjct: 647 ANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVEEVTPLM 706

Query: 429 RAIGKVMELALGYQGGA 445
           R+  K +   + Y  GA
Sbjct: 707 RSNAKAVNFGIVYGIGA 723


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE R++A ++ ++  + AF  GEDI+  T A+ F TP++ 
Sbjct: 662 IRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIFRTPLEG 721

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 722 VTPEQRRSAKAINFGLIY 739


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G+ +  AD + IE R++A I+G++  + AF  G D++  T A+ F   +D+
Sbjct: 683 VREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHAFREGLDVHRATAAEVFGVALDQ 742

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 743 VSSEQRRYAKVINFGLIY 760


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 25/153 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ + + +  DG++  T Q    ++TGR S      QN+P   R+EE             
Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   + S G  L+ AD + IE RVLA +A ++  + AF +G DI+  
Sbjct: 633 ---------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRK 683

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           T ++ F    DKV+  QR+  K +   + Y  G
Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G +++ AD + IE R++A ++G+     AF  G DI+ +T ++ F  P++ 
Sbjct: 718 IRQAFVARDGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLED 777

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 778 VSAEQRRSAKAINFGLIY 795


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  V  DGR+R T      + TGR S      QN+P R E   EI             +
Sbjct: 618 LAACVDEDGRIRSTF-MQTVTATGRISSTEPNLQNIPIRMELGREI-----------RKV 665

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             P     DCV            + AD + IE RVLA ++G++  I AF  G+DI+ +T 
Sbjct: 666 FYP---KKDCV-----------FLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTA 711

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  FNTP D+V+  QR   K +   + Y
Sbjct: 712 SLVFNTPFDEVTDLQRRRAKAVNFGIVY 739


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 51/304 (16%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLV 206
           +L  EY   D + T  L++ L PL  G+ D  LL +           +   G ++D   +
Sbjct: 461 ELATEYAAEDADITWRLYENLSPLLQGD-DFKLLQELELPLIEVLAEMELHGMKLDKSHL 519

Query: 207 LKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            KL +LI Q+ +   ++I  L   +  I S +Q   L + LF    + ++  ++    + 
Sbjct: 520 QKLSQLIQQKLEDQQKEIYSLAGEEFNINSPKQ---LSVILFEKLELPVIKKTKNGYSTD 576

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFYGASRTG 318
           +S   + QLA +  L  +  +   ++KL +T ++A+  D     GR+  +     A+ TG
Sbjct: 577 VS--VLEQLAAEHELPDVVLTYRQLVKLKSTYADALQEDIFNNTGRVHTSFNQTVAA-TG 633

Query: 319 RWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           R S      QN+P R E   EI                         R   +A     L+
Sbjct: 634 RLSSSNPNLQNIPIRTEMGREI-------------------------RKAFVAEGNNHLL 668

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E RVLA ++ ++  + AF  GEDI+  T  + F T  +++  E R + K +  
Sbjct: 669 SADYSQVELRVLAHLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNF 728

Query: 438 ALGY 441
            + Y
Sbjct: 729 GIVY 732


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I S G KLV AD + IE R++A ++G+   + AFA G+DI+  T A+ F   +D 
Sbjct: 678 IRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALDA 737

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K +   L Y
Sbjct: 738 VTTDMRRSAKAINFGLIY 755


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+++
Sbjct: 691 IRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQ 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 751 VTSDQRRSAKAINFGLIY 768


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +L+  D + +E R++A  +G++   +AFA GEDI+  T A+ F T +++
Sbjct: 659 IRRGFIARQGYRLLAVDYSQVELRIMAHFSGDERLHRAFAAGEDIHRATAAEVFATALEQ 718

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 719 VTAEQRRAAKAINFGLIY 736


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 691 IRQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEH 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 751 VTGEQRRSAKAINFGLIY 768


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +LV AD + IE R++A ++ ++  + AF   EDI+  T  + F TP+++
Sbjct: 662 IRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEVFRTPLEE 721

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 722 VTPEQRRSAKAINFGLIY 739


>gi|307692866|ref|ZP_07635103.1| DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L + ++ DGR+    Q    + TGR S      QN+P       I TQ          
Sbjct: 615 DGLGKVIAPDGRIHTCFQ-NTVTATGRLSSTEPNLQNIP-------IRTQ---------- 656

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
               LG     +R   +A+ GK LV AD + IE R+LA +AG+   I+ F +G DI+  T
Sbjct: 657 ----LGAQ---LREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEGFHSGADIHTIT 709

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            ++ F    D+V+ + R   K +   + Y  G   F +++   G+ +QQ
Sbjct: 710 ASQVFGVTPDQVTPQMRRSAKAVNFGIVY--GISPF-SLSQDIGVSVQQ 755


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++K
Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVFGLPLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 752 VTNDQRRSAKAINFGLIY 769


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A  + +   +KAFA G DI+  T A+  N P+++
Sbjct: 659 IRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGLDIHQATAAEVLNIPLER 718

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 719 VTHEQRRSAKAINFGLMY 736


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383
           PR +R      QT+ A  R  + +DP    + + ++    +R   +A  G  LV AD + 
Sbjct: 698 PRTKRIHASFNQTVAATGRLSS-SDPNLQNIPIRTELGREIRKAFVAEPGHLLVAADYSQ 756

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R+LA ++ +   I+AF  G+DI+    A+  + P+ +VS+EQR   K++   + Y  
Sbjct: 757 IELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMVNFGIVYGV 816

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
              G A+      S  G  +  + +     +TF +   A++H
Sbjct: 817 TAFGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAH 858


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           ++  ++  L+ + +H+++ +L   L   +LA   S  +  ++L     S GR+  T    
Sbjct: 603 VISTAQDVLEELAAHNDVPRLV--LEFRQLAKLKSNYV--DSLPLLADSQGRVHTTFHQV 658

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P +            AL R              +R+  IA+ 
Sbjct: 659 GTA-TGRLSSTNPNLQNIPVR-----------TALGRE-------------IRAAFIAAP 693

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G+KL+ AD + IE R++A  + +   + A++ G+DI+  T ++ F    + + KE R   
Sbjct: 694 GRKLLSADYSQIELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRA 753

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           K +   + Y  G   F  +A   G+D  +  Q + +
Sbjct: 754 KAVNFGIVY--GISPFG-LAQQLGIDQHEARQYIDT 786


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 29/163 (17%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L++L S+ +  L+ +  SE     GR+  +    GA+ TGR S      QN+P   R++E
Sbjct: 632 LSKLKSTYTDALQTHINSET----GRVHTSYSITGAN-TGRLSSTDPNLQNIPI--RTDE 684

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                      G  I           R   IA  GK LV  D + IE R+LA +A  D  
Sbjct: 685 -----------GRKI-----------REAFIADEGKVLVALDYSQIELRILAHVANIDAL 722

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +AF +G DI+  T ++ FN P+D+++ + R   K +   + Y
Sbjct: 723 KQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIY 765


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A I+ ++  ++AFA GEDI+  T A+ F      
Sbjct: 672 IREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVARGD 731

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +A + G++
Sbjct: 732 VSSEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 763


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 110/284 (38%), Gaps = 62/284 (21%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+TL      DGR+  T      + TGR S      QN+P   RSE              
Sbjct: 656 LDTLGPLRRQDGRVHTTYN-QTITATGRLSSSNPNLQNIPT--RSE-------------- 698

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                LG     V++   A  G   +  D + IE R+LA ++G++  I+AF  GED +  
Sbjct: 699 -----LG---HTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAE 750

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467
           T A+ F  P+D+V+   R+  K +   + Y     G ++      S     + ++ +   
Sbjct: 751 TAARVFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQTLDIPVSEAQEMIDRYFEAYP 810

Query: 468 STSTFEDWEQAESHH-------LWMQDQYPEFAVKD--------------KLIGTACELV 506
               F D   AE+            +   PE  +K+               + G+A +++
Sbjct: 811 GVRAFLDRTVAEAAERGYAETMFGRRRPIPELRMKNATQRSFGERTAMNHPMQGSAADII 870

Query: 507 KKAWRAK----HQG------VLQLWKDLTEGFACVVQEGGSISA 540
           K A R      H G      +LQ+  +L   F C + E   +SA
Sbjct: 871 KIAMRRVAERLHGGDLHAKMILQVHDELD--FECPIAEVADVSA 912


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KLV  D + IE R++A ++ +   + AFA+G DI+  T A+ F  P+++
Sbjct: 688 IRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPGLLGAFASGADIHRATAAEVFGRPLEE 747

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+  +R   K +   L Y  GA     +A   G+D  Q
Sbjct: 748 VTVNERRAAKAINFGLMYGMGA---FGLARQLGIDRGQ 782


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 30/175 (17%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  +  L +   ++RL  +   +LK       V+ DGR+  T     A+ TGR S     
Sbjct: 582 HPFLLHLLRHRDVSRLRQTIEGLLK------TVAGDGRIHTTFNQTIAA-TGRLSSTEPN 634

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P   R+EE           G  I +            ++    + L+ AD + IE 
Sbjct: 635 LQNIPI--RTEE-----------GRRIRE----------GFVVGPGYESLMTADYSQIEM 671

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           R++A ++ +D  I+AF +G D +  T A+ F+ P D V+ E RA  K M   L Y
Sbjct: 672 RIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPADDVTVEMRAKIKAMNYGLAY 726


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G ++V AD + IE R++A ++ +   + AFA+GEDI+ TT A+ F    ++
Sbjct: 648 VREAFIAPPGHRIVSADYSQIELRIMAHLSDDANMLAAFASGEDIHKTTAAEVFGVTREQ 707

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 708 VTSEQRRAAKAINFGLIY 725


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A I+ ++  ++AFA GEDI+  T A+ F      
Sbjct: 678 IREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVARGD 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   KV+   L Y  G   F  +A + G++
Sbjct: 738 VSSEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 769


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 26/174 (14%)

Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            VR+      G   L+ AD + IE R+LA ++G+   I AF +G+DI+  T A+ F  P+
Sbjct: 633 AVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPL 692

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           D V+ EQR   K +   + Y     G A+         G  + ++ +      TF D   
Sbjct: 693 DAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGVRTFLDKIV 752

Query: 478 AESH--------------------HLWMQDQYPE-FAVKDKLIGTACELVKKAW 510
           A++H                      +MQ  + E  A+   + GTA +L+K A 
Sbjct: 753 ADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKIAM 806


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 31/172 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ ++  ++AF  G+D++  T A+ FN    +
Sbjct: 698 IREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLE 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL--------QQFSQNVKSTSTFEDW 475
           V+ +QR + KV+   L Y  G   F  +AS+ G+          + F++   + +  E+ 
Sbjct: 758 VTPDQRRVAKVINFGLIY--GMSAFG-LASNLGIGRDAAKLYIDRYFARYPGAANYMEET 814

Query: 476 EQAESHH----------LWMQD---------QYPE-FAVKDKLIGTACELVK 507
            Q+   H          LW+ D         Q  E  A+   + GTA +L+K
Sbjct: 815 RQSAREHGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLIK 866


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 41/186 (22%)

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +E  L+++L H ++T+L                  +  L +AV +DGR+  T Q   A+ 
Sbjct: 596 AETFLEALLRHRDVTRLRS---------------TVQGLQKAVDADGRIHTTYQQTIAA- 639

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P       I T+                 A   +R   +  +G   
Sbjct: 640 TGRLSSVDPNLQNIP-------IRTE-----------------AGRRIREVFVVGSGFDH 675

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++G++  I+AF  GED++    +K F    ++V+ E RA  K M
Sbjct: 676 LMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQVAPEEVTAEMRAKVKAM 735

Query: 436 ELALGY 441
              L Y
Sbjct: 736 SYGLAY 741


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 121/308 (39%), Gaps = 49/308 (15%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ-TYALRMYLFLITG 250
           +  RG  IDL+   +  + + +E   L  +I  L   +  +RSS+Q    L   L L TG
Sbjct: 458 MEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLAGQEFNLRSSQQMAQVLFGDLELPTG 517

Query: 251 IDLVDMSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
                    T   +L      H  I ++ +   L +L S+      L  L + V    RL
Sbjct: 518 RKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLEKLRST-----YLEPLPQKVDDTSRL 572

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                   A+ TGR S      QN+P                 RGE            +R
Sbjct: 573 HTHFNQL-ATATGRLSSSGPNLQNIP----------------IRGEF--------GPRMR 607

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
            C +A  G +LV AD + IE RVLA ++ +   ++AF  GEDI+  T A   +   + V 
Sbjct: 608 QCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVD 667

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-------QQFSQNVKSTSTF-EDWEQ 477
            E R   K +   L Y  G    + ++   G+ L       Q++   ++  S F E  E 
Sbjct: 668 SEARRQAKTINFGLLYGMGP---QKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIED 724

Query: 478 AESHHLWM 485
           A   H ++
Sbjct: 725 AAKQHGYV 732


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 550 LARQSAELGAELMKLEQEAYAAASQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 610 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 668

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 669 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 704

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 705 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 764

Query: 440 GYQGG 444
            Y  G
Sbjct: 765 IYGMG 769


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L + V+ DGR+  T     A+ TGR 
Sbjct: 610 LEHLLAHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 653

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +              + G  I D            ++      L+ AD
Sbjct: 654 SSTEPNLQNIPVR-------------TDAGRQIRD----------GFVVGEGYDSLLTAD 690

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I+AF  GED++    A+AF  PI++V+ E R   K M   L 
Sbjct: 691 YSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLA 750

Query: 441 Y 441
           Y
Sbjct: 751 Y 751


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKK++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F+   D+
Sbjct: 677 IRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDE 736

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 737 VTTEQRRRAKAVNFGLIY 754


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 28/141 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  T      + TGR S      QN+P R ER  E                       
Sbjct: 669 GRIH-TQYMQAVAATGRLSSNNPNLQNIPIRTERGRE----------------------- 704

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             VR   +  +    L+ AD + IE R++A ++ E+  I AF NGEDI+ +T AK F   
Sbjct: 705 --VRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIHASTAAKVFGVD 762

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           I+ V++EQR+  K +   + Y
Sbjct: 763 INDVTREQRSNAKTVNFGIVY 783


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGMPLES 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTNEQRRSAKAINFGLIY 769


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G  ++ AD + IE R++A I+ +   I+AF  G+DI+  T A+ F   + +
Sbjct: 667 IREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFLGGQDIHSATAAEVFGISVGQ 726

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   KV+   L Y  G   F  +A+  G+D
Sbjct: 727 VNAEQRRYAKVINFGLIY--GMSEF-GLATQLGID 758


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 34/195 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR +  
Sbjct: 636 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 694

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+ E                         VR    A  G  +V AD + 
Sbjct: 695 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSADYSQ 730

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  
Sbjct: 731 IELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 790

Query: 444 GAKVFKTMASHCGLD 458
           G      +A   G+D
Sbjct: 791 GQ---YGLAKSLGID 802


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 49/233 (21%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L  +V+ DGR+  T Q   A+ TGR S      QN+P   R+EE                
Sbjct: 625 LLRSVAPDGRIHTTFQQTIAA-TGRLSSADPNLQNIPI--RTEEGYR------------- 668

Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G + L+ AD + IE R++A ++G++  I+AF +GED++    
Sbjct: 669 ---------IREGFVVGEGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVG 719

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           ++ F  P D+V+   R+  K M   L Y  G   F       GL  +Q S +V    T  
Sbjct: 720 SRVFGVPTDEVTSAMRSKIKAMSYGLAY--GLSAF-------GLS-KQLSIDVAEARTL- 768

Query: 474 DWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                      M D +  F  V+D L G   +  +  +     G  +   DLT
Sbjct: 769 -----------MDDYFDRFGGVRDYLSGVVAQARQVGYTETLMGRRRYLPDLT 810


>gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 143

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHV 153
           V A T GLP SLK+    LN      KM+EGK LI  FC    +S    P  D       
Sbjct: 2   VWAATLGLPLSLKDVGKVLNLDAQ--KMDEGKDLIKHFCVPDDNSQRRLPSSDPA----- 54

Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDL 205
             W+LF  Y  RDV+    + ++L   P+ +   + + +DQ INDRG RID  L
Sbjct: 55  -GWKLFQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTL 107


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GK+++ AD + IE R++A ++ ++  ++AFA G+DI+  T A+ F+   + 
Sbjct: 683 IRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVFDVAFET 742

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 743 VTSEQRRRAKAVNFGLIY 760


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 31/181 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR +  
Sbjct: 617 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 675

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+ E                         VR    A  G  +V AD + 
Sbjct: 676 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSADYSQ 711

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  
Sbjct: 712 IELRIMAHLSGDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 771

Query: 444 G 444
           G
Sbjct: 772 G 772


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +AS G +L+ AD + +E R++A ++G++   +AF  GEDI+  T A+ F    D+
Sbjct: 665 IRKAFVASPGHRLITADYSQVELRIMAHLSGDEGLRRAFEQGEDIHRATAAEVFAA--DE 722

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 723 VNDEQRRAAKAINFGLIY 740


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  +  AD + IE R++A I+G++  ++AF  G D++  T A+ F +  D+
Sbjct: 698 VREAFVAPAGSVIASADYSQIELRIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPDQ 757

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 758 VSSEQRRYAKVINFGLIY 775


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+++
Sbjct: 695 IRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLLTAFAQGKDIHRATAAEVFGVPLEE 754

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 755 VTSDQRRSAKAINFGLIY 772


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 28/135 (20%)

Query: 315 SRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           + TGR S      QN+P R E  +EI                         R   I   G
Sbjct: 659 TTTGRLSSSNPNLQNIPVRNEEGKEI-------------------------RKAFIPEPG 693

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            +   AD + IE R++A ++G+   I+AF  G DI+  T AK +  P+++V++E+R+  K
Sbjct: 694 CEFFSADYSQIELRIMAHLSGDPHMIEAFREGHDIHAATAAKVYKKPLEEVTREERSKAK 753

Query: 434 VMELALGYQGGAKVF 448
                + Y  G  VF
Sbjct: 754 TANFGIIY--GITVF 766


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 34/255 (13%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLVD 255
           G  +DLD        +  E  +L  D+ K   G   IRSS+Q   L   LF   G+    
Sbjct: 485 GIAVDLDAFAAFLREVQGELDRLTRDVYKAAGGEFNIRSSQQLAEL---LFGTLGLPTGG 541

Query: 256 MSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
            ++G    T + +L   +      D IL            L  L   V   GR+  T   
Sbjct: 542 KTKGGQTSTAQDVLEKLSGRHPVVDAILEFRKLEKLRSTYLEPLPRLVDGAGRIHTTFNQ 601

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A+ TGR S      QN+P                 RG+     LG     +R+C  A+
Sbjct: 602 L-ATATGRLSSSNPNLQNIP----------------VRGD-----LGRR---MRTCFTAA 636

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G +LV AD + +E RVLA ++ +   + AF  G DI+  T +  ++   D+VS +QR  
Sbjct: 637 PGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDVAQDQVSTDQRRN 696

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G +
Sbjct: 697 AKTINFGLIYGMGPQ 711


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 578 LARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 637

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 638 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 696

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 697 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 732

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 733 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 792

Query: 440 GYQGG 444
            Y  G
Sbjct: 793 IYGMG 797


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 28/144 (19%)

Query: 300 SSDGRLRGTL-QFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357
           S  G++  T  QF  A  TGR S      QN+P R ER  EI                  
Sbjct: 662 SKTGKIHTTYNQFVAA--TGRLSSINPNLQNIPIRTERGREIR----------------- 702

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  ++ +       L+ AD + IE R++A  +G++  I+AF NG DI+ TT AK F
Sbjct: 703 -------KAFVPRDENHILLAADYSQIELRIMAAFSGDESMIEAFKNGRDIHATTAAKIF 755

Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441
             P+++V+ + R   K     + Y
Sbjct: 756 QVPLEEVTSDMRRKAKTANFGIIY 779


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 550 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 610 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 668

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 669 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 704

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 705 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 764

Query: 440 GYQGG 444
            Y  G
Sbjct: 765 IYGMG 769


>gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
 gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
          Length = 162

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGG 444
           RV+A +A E W+ + F NG DIY T+ ++ F+ P++K  ++   R  GK+ +LALGY G 
Sbjct: 35  RVIAHLARESWRAEVFKNGGDIYCTSASQMFHVPVEKHGINGHLRQKGKIADLALGYGGS 94

Query: 445 AKVFKTMAS 453
               K M +
Sbjct: 95  VGALKAMGA 103


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 615 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 658

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +  +G  +L+ A
Sbjct: 659 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYAELMTA 694

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   I+AF  GED++    ++AF  PI++V+ E R   K M   L
Sbjct: 695 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGL 754

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 755 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 781


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 30/178 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           ++ L + V SDGR+    +    +RTGR S      QN+P R+E            + R 
Sbjct: 569 VDGLLKEVESDGRVHSVFK-QTETRTGRISSTEPNMQNIPVRKE------------IGRN 615

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +A  G  L+ AD + IE RVLA + G++   K F  G DI+ 
Sbjct: 616 -------------MRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHA 662

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            T ++ F  P D V  E R+  K +   + Y  GA    +++   G+ + +  Q +K+
Sbjct: 663 MTASQVFGIPADMVLPEMRSAAKAVNFGIIYGIGA---FSLSKDIGVSVAEAKQYIKN 717


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G ++V AD + IE R++A ++G++    AF  G D++  T A+ F T ++ 
Sbjct: 687 VRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLTNAFNQGLDVHSATAAEVFGTSVES 746

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 747 VTPEQRRSAKAINFGLIY 764


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    PI++
Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G   F  +A   G+
Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++G+D  ++AF  G+D++  T A+ F     +
Sbjct: 699 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 758

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR   KV+   L Y  G   F  +AS+ G+
Sbjct: 759 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 789


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
           +I D LG     +R   +A  G  L+ AD + IE R+LA +A ED  IKAF  G DI+  
Sbjct: 610 SIRDELGKE---IRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLDIHTK 666

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T    FN   ++V + +R I K +   + Y
Sbjct: 667 TATLIFNCSPEEVDEHKRRIAKTVNFGIVY 696


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA   K++V AD + IE R++A ++ +   + AFA GEDI+  T ++ F   + K
Sbjct: 688 IRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLLAAFAQGEDIHRATASEVFGVALSK 747

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           VS EQR   K +   L Y               G AK +  +       + ++ +  +  
Sbjct: 748 VSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMEETREQ 807

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512
           +  + + E  +   LW+ D     A++ K          + GTA +++K+A  A
Sbjct: 808 AAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++G+D  ++AF  G+D++  T A+ F     +
Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR   KV+   L Y  G   F  +AS+ G+
Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 787


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++  D + IE R++A ++G+   + AF NG+DI+  T A+     ID+
Sbjct: 692 IRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDAFKNGKDIHAATAAEIIGVDIDQ 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTSEQRRRAKAINFGLIY 769


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    PI++
Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G   F  +A   G+
Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++G+D  ++AF  G+D++  T A+ F     +
Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR   KV+   L Y  G   F  +AS+ G+
Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 787


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    PI++
Sbjct: 650 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 709

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G   F  +A   G+
Sbjct: 710 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 740


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 609 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 652

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +  +G  +L+ A
Sbjct: 653 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYAELMTA 688

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   I+AF  GED++    ++AF  PI++V+ E R   K M   L
Sbjct: 689 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGL 748

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 749 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 775


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++G+D  ++AF  G+D++  T A+ F     +
Sbjct: 713 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 772

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR   KV+   L Y  G   F  +AS+ G+
Sbjct: 773 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 803


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   I AF  G+DI+ +T A+ F  P+ +
Sbjct: 692 IRQAFIAPEGYQIMAADYSQIELRIMAHLSQDKGLINAFNEGKDIHRSTAAEIFGIPLAQ 751

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 752 VSSEQRRSAKAINFGLIY 769


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 331 PRQERSEEILTQTIQALNRGETIAD-----PLGLA-SDCVRSCIIASNGKKLVVADLAGI 384
           P  ER      QTI A  R  +        P+ L     +R   IA  G  LV +D + I
Sbjct: 605 PNTERIHSSFNQTIAATGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDSDYSQI 664

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA I+ E+  I+AF+   DI+  T ++ F   I +V+KEQR   K +   + Y  G
Sbjct: 665 ELRVLAHISDEEALIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVY--G 722

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
              F  ++++ G+  ++  Q +K  +  + ++  E    +MQD
Sbjct: 723 ISDF-GLSNNLGITKKKAGQYIK--TYLDRYKNIEK---YMQD 759


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 555 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 614

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 615 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 673

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 674 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 709

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 710 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 769

Query: 440 GYQGG 444
            Y  G
Sbjct: 770 IYGMG 774


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G  +  AD + IE R++A I+G++  ++AF  G D++  T A+ F    D+
Sbjct: 701 VREAFIAPPGSVIASADYSQIELRIMAHISGDESLLRAFREGIDVHRATAAEVFGATPDQ 760

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 761 VSSEQRRYAKVINFGLIY 778


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351
           + L+  +  DGR+ GT      + TGR S      QN+P R E   EI            
Sbjct: 701 DGLAGYIREDGRIHGTFN-QTITATGRLSSTEPNLQNIPVRMELGREI------------ 747

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        R   +   G   V AD + IE RVLA ++G++  I+A+   EDI+  
Sbjct: 748 -------------RRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAI 794

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+ P+++V+  QR   K +   + Y
Sbjct: 795 TASEVFHVPLEEVTPLQRRNAKAVNFGIVY 824


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 31/181 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR +  
Sbjct: 615 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 673

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+ E                         VR    A  G  +V AD + 
Sbjct: 674 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSIIVSADYSQ 709

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  
Sbjct: 710 IELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 769

Query: 444 G 444
           G
Sbjct: 770 G 770


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ +   ++AFA G+DI+  T A+ F  P+++
Sbjct: 693 IRQAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLEAFAQGKDIHSATAAEVFGVPLEE 752

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 753 VTSEQRRSAKAINFGLIY 770


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 179/413 (43%), Gaps = 80/413 (19%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  YL DETV  V  N  ++  +F K  GI++  K +  T +L+ +  L + +    L L
Sbjct: 399 LKPYLEDETVKKVGQNIKYDLKIFLK-YGIEL--KSFEDTMLLSYS--LDAGVNRHNLDL 453

Query: 117 NFSEHL----TKMEE----GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRD 166
               HL     K ++    GK+ +  F +  ID+   Y C  A+  ++ + LF +   + 
Sbjct: 454 LAKTHLDHDNIKFKDVVGTGKSEVT-FDEVLIDNAYRYACEDADVTLKLYNLFKDRIVK- 511

Query: 167 VEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            E   ++++ L IPL D      +L +  N+ G +ID  ++ KL    + + K L++ I 
Sbjct: 512 -EKCFQIYETLEIPLVD------VLARMENN-GIKIDQVILKKLSNSFSADLKTLEKKIY 563

Query: 226 KLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           KL+  +  I S++Q   +      I+G      ++ T K   + +N+       +L  LA
Sbjct: 564 KLSGEEFNIASTKQLGDILYEKLKISG------TKKTKKGNFA-TNVN------VLEDLA 610

Query: 284 SSGSAILKL---------------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           S G+   KL               ++L E +  + +   T     A+ TGR +      Q
Sbjct: 611 SKGNEFPKLVLEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQ 670

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P + +  ++                        +RS  ++  G  ++ AD + IE RV
Sbjct: 671 NIPIKSKEGKL------------------------IRSAFVSEKGSSIISADYSQIEMRV 706

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           LA +A      KAF N EDI+  T ++ F   I K++++ R   K +   + Y
Sbjct: 707 LAHVADVKELKKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIY 759


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ ++    + L+ AD + IE R++A ++G+   I+AFA+GED++    A+AFN P+ +V
Sbjct: 732 RAFVVGPGYETLLTADYSQIEMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEV 791

Query: 425 SKEQRAIGKVMELALGY 441
             E R   K M   L Y
Sbjct: 792 DPELRRRIKAMSYGLAY 808


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    PI++
Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G   F  +A   G+
Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V  DGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 593 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 635

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  I  +G  +L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 636 --------AGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHN 687

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K M   L Y
Sbjct: 688 YVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 718


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 41/259 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGGAKVFKTMASHCGLD 458
            Y  G      +A   G+D
Sbjct: 766 IYGMGQ---YGLAKSLGID 781


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGG 444
            Y  G
Sbjct: 766 IYGMG 770


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 40/213 (18%)

Query: 250 GIDLVDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILK-LNTLSEAVSSDGRLRG 307
           GI+L D  E TL     H  +  L A      R ++ G+A L+ L+ L+      GR+  
Sbjct: 365 GIELSDTREETLSRHREHPTVAALLAYREHRKRQSTYGAAWLENLHPLT------GRIHP 418

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           + Q  GA  +GR S      Q +PR+                               R+C
Sbjct: 419 SWQQIGAE-SGRMSCSRPNLQQVPRE----------------------------PAYRAC 449

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
             A  G+ L+ AD + IE R+ A IAGE   ++AF  GED++  T      T   + S+E
Sbjct: 450 FQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTLT--ARLVTGKAEPSRE 507

Query: 428 QRAIGKVMELALGYQGGAKVFKTMA-SHCGLDL 459
            R + K +   L Y  G++  +T A ++ GL+L
Sbjct: 508 DRQLAKALNFGLLYGMGSEGLRTYARANYGLEL 540


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++VS DGR+  T     A+ TGR S      QN+P   R+EE           G 
Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 656

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           R+ ++    + L+ AD + IE R++A ++ +D  I AF +G D +  
Sbjct: 657 RIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHAA 706

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T +  F  P+++V+ +QR   K M   L Y
Sbjct: 707 TASSVFQVPVEEVTTDQRRKIKAMNYGLAY 736


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           +  YA  ++    +   E +    D L YL+DE     ++N +  +IL  +  GIDI   
Sbjct: 329 VLGYALYNKEQAFYISFEDALNDQDFLNYLKDEKYSKYSYN-IKAQILSARWNGIDIKGM 387

Query: 92  RW---ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            +   + + +L  +  L   +K+ C   ++     + EE   +  +  K  I  P  D  
Sbjct: 388 NFDLQLASYILNPS--LKDEMKSICDYYDYDS--VQYEE--EVFGKLAKKHI--PEIDLL 439

Query: 149 RANHVQA----WQLFGEYCKR-DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRID 202
             + V      + L  E  +R   E   +L++ L +P++    D+  +       G +ID
Sbjct: 440 ARHTVSKAKAIYDLKDEAIQRLKDEEQFDLYQNLELPVTYILADMEYV-------GAKID 492

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGI--------- 251
           + ++ +++    Q+ K+++EDI  L D    I S +Q   L   LF   G+         
Sbjct: 493 IHVLKEMEMDFEQQIKQIEEDIYMLADKEFNISSPKQ---LGEVLFERLGLPNGKKTKTG 549

Query: 252 -----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
                D+++  EG       H  I  + K  +L +L+S+      +  L E V +DG++ 
Sbjct: 550 YSTSQDILEKIEGL------HPIIPLIQKYRMLTKLSST-----YVKGLQEQVFADGKIH 598

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            T+     ++TGR S      QN+P RQE  +                          +R
Sbjct: 599 -TIYNQALTQTGRLSSIEPNLQNIPVRQEEGK-------------------------LIR 632

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              I S+   LV  D + IE R+LA +AG    I+AF   +DI+  T A  F    ++V+
Sbjct: 633 KAFIPSHDY-LVTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVT 691

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
              R   K +   + Y  G   FK ++   G+ L++  + ++    FE++
Sbjct: 692 ANMRRQAKAVNFGIIY--GMGEFK-LSQQIGVSLKEAKEFIR--RYFEEY 736


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351
           + L+  +  DGR+ GT      + TGR S      QN+P R E   EI            
Sbjct: 701 DGLAGYIREDGRIHGTFN-QTITATGRLSSTEPNLQNIPVRMELGREI------------ 747

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        R   +   G   V AD + IE RVLA ++G++  I+A+   EDI+  
Sbjct: 748 -------------RRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAI 794

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+ P+++V+  QR   K +   + Y
Sbjct: 795 TASEVFHVPLEEVTPLQRRNAKAVNFGIVY 824


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 33/203 (16%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA+D  L RL     ++ KL +     L E +   GR+  T      + TGR S   
Sbjct: 603 LQELAQDYELPRLIMEHRSLSKLKSTYTDKLPEMIQKTGRIH-TSYHQAITATGRLSSTD 661

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P   RS E                         +R   IA  G KLV AD + +
Sbjct: 662 PNLQNIPI--RSAE----------------------GRRIRQAFIAPKGYKLVAADYSQV 697

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A ++ +   + AF    D++  T A+ F   +D+V+ EQR   K +   L Y  G
Sbjct: 698 ELRIMAHLSQDSGLLDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIY--G 755

Query: 445 AKVFKTMASHCGLDLQQFSQNVK 467
              F  +A   G+   +  + +K
Sbjct: 756 MSAF-GLAKQLGIGRPEAGKYIK 777


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V  DGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 603 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 645

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  I  +G  +L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 646 --------AGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHN 697

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K M   L Y
Sbjct: 698 YVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 728


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 549 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 608

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 609 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 667

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 668 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 703

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 704 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 763

Query: 440 GYQGG 444
            Y  G
Sbjct: 764 IYGMG 768


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    PI++
Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 758 VSSEQRRRAKAVNFGLIY 775


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    PI++
Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G   F  +A   G+
Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 548 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 607

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 608 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 666

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 667 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 702

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 703 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 762

Query: 440 GYQGG 444
            Y  G
Sbjct: 763 IYGMG 767


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 38/206 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+     I++
Sbjct: 691 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIIGVDIEQ 750

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQ-----FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   + QQ     F +        ED 
Sbjct: 751 VSAEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQQYMDTYFERYPGVMQYMEDT 807

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509
             A +   +++  +      PE               A+   + GTA +++KKA      
Sbjct: 808 RSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 867

Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534
           W  ++ QG ++L   + +     VQE
Sbjct: 868 WIESQGQGRVKLLMQVHDELVFEVQE 893


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 41/259 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 765

Query: 440 GYQGGAKVFKTMASHCGLD 458
            Y  G      +A   G+D
Sbjct: 766 IYGMGQ---YGLAKSLGID 781


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 121/299 (40%), Gaps = 44/299 (14%)

Query: 160 GEYCKRDVEATRELF--------KRLIPLS---DGERDLWLLDQTINDRGYRIDLDLVLK 208
           G Y   D + T +L         KR  PL+   + E  L  +   I   G +ID  ++ K
Sbjct: 495 GRYAAEDADVTLQLHLKMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQK 554

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             E I     +L++    +       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 555 HSEEITLRLAELEQKAHDIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 612

Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322
            + +LA D  L ++      + KL +T ++ +        GR+  T      + TGR S 
Sbjct: 613 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 671

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P   R+EE                         +R   IA     +V AD +
Sbjct: 672 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYLIVSADYS 707

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ +   +KAFA G+DI+  T A+ F  P++ VS EQR   K +   L Y
Sbjct: 708 QIELRIMAHLSRDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIY 766


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 58/309 (18%)

Query: 146 DCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTI-----NDRG 198
           D T   H++ W +L  E   ++V    E+   L+P +S  ER+  L+DQ+I      + G
Sbjct: 503 DVTLQLHLKMWPELEKEQGPKNVFEQVEM--PLVPVISRIERNGVLIDQSILAVHSQELG 560

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            R+  +L LK  EL  +                + S +Q   L+  LF   GI     + 
Sbjct: 561 SRL-AELELKAHELAGEPFN-------------LSSPKQ---LQTILFEKQGIKPTKKTP 603

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFY 312
           G   S  S   + +LA D  L ++      + KL +T ++ +        GR+  T    
Sbjct: 604 GGAPST-SEEVLAELALDYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVH-TSYHQ 661

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P   R++E                         +R   IA  
Sbjct: 662 TVTATGRLSSSDPNLQNIPV--RNDE----------------------GRRIRQAFIAPQ 697

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G +++ AD + IE R++A ++ +   + AFA+ +DI+  T A+ F   +DKVS EQR   
Sbjct: 698 GHRILAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSA 757

Query: 433 KVMELALGY 441
           K +   L Y
Sbjct: 758 KAINFGLIY 766


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266
           +A++  +L  +++KL      ++ Q +       L+  LF   GI    + +     I +
Sbjct: 550 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609

Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319
           +  +  QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR
Sbjct: 610 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 668

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P   R+ E                         VR    A  G  +V A
Sbjct: 669 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 704

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L
Sbjct: 705 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 764

Query: 440 GYQGG 444
            Y  G
Sbjct: 765 IYGMG 769


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 41/182 (22%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 616 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 659

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A   +R   +  +G  +++ A
Sbjct: 660 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYTEVMTA 695

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   I+AF  GED++    ++AF+ PID+V+ + R   K M   L
Sbjct: 696 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGL 755

Query: 440 GY 441
            Y
Sbjct: 756 AY 757


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA+ +DI+  T A+ F   +DK
Sbjct: 651 IRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDK 710

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 711 VSGEQRRSAKAINFGLIY 728


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V  DGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 596 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 638

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  I  +G  +L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 639 --------AGRQIRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHN 690

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K M   L Y
Sbjct: 691 YVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 721


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 31/181 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + QLA D  L ++     ++ KL +     L E +S  DGR+  T      + TGR +  
Sbjct: 614 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 672

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+ E                         VR    A  G  +V AD + 
Sbjct: 673 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSADYSQ 708

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  
Sbjct: 709 IELRIMAHLSGDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 768

Query: 444 G 444
           G
Sbjct: 769 G 769


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L +A + DGR+  T Q  GA+ TGR S      QN+P R E    I         RG  I
Sbjct: 712 LQKAAADDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRTEEGRRI---------RGAFI 761

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             P         + +     + L+ AD + IE R++  +A ++  I A+  GED++    
Sbjct: 762 VAP---------APVDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVG 812

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F    ++V+ EQR+  K M   L Y
Sbjct: 813 SEVFGVAPEEVTPEQRSKVKAMSYGLAY 840


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 45/66 (68%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ ED  ++AF +G DI+ +T ++ FN P+++V++EQR+  K +
Sbjct: 716 LLAADYSQIELRIIAALSKEDTMMQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTV 775

Query: 436 ELALGY 441
              + Y
Sbjct: 776 NFGIIY 781


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 28/158 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L +AV  DGR+  T Q    + TGR S      QN+P                    
Sbjct: 597 LEGLIKAVGDDGRIHTTFQ-QTMTSTGRLSSTDPNLQNIP-------------------- 635

Query: 352 TIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
            I  P G     +RS   + +N + L+ AD + IE RV+A ++ +   I A+ NGED++ 
Sbjct: 636 -IRTPAG---KKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHN 691

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
              AK F+ P   V+ E R   KV  L+ G   G   F
Sbjct: 692 YVGAKVFDVPPSGVTPELRR--KVKALSYGLVYGLSAF 727


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA   K++V AD + IE R++A ++ +   + AFA GEDI+  T ++ F   + K
Sbjct: 689 IRQAFIAGADKRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALSK 748

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 749 VSGEQRRSAKAINFGLIY 766


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L EAV  DGR+  T    GA+ TGR S      QN+P   R++              
Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPV--RTD-------------- 613

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +R+      G + L+ AD + IE RV+A ++ +   I+A+A+GED++ 
Sbjct: 614 --------AGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLHN 665

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K +   L Y
Sbjct: 666 YVGSRVFDVPVDEVTPELRRRVKALSYGLVY 696


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-NTPID 422
           +R   IA +G  +V AD + IE R++A ++G+   ++AFA  ED++  T A+ F  TP+D
Sbjct: 668 IREAFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFAKNEDVHRATAAEIFMTTPVD 727

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            V+ EQR   KV+   L Y  G   F  +A   G++
Sbjct: 728 -VTTEQRRYAKVINFGLIY--GMSAFG-LAKQLGIE 759


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+    PI+ 
Sbjct: 682 IRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPIES 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR   K +   L Y  G   F  +A   G+
Sbjct: 742 VTTEQRRRAKAINFGLIY--GMSAFG-LAKQLGM 772


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 38/182 (20%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+++++H + T+L +                +  L E V+ DGR+  T     A+ TGR 
Sbjct: 630 LENLMAHRDATKLRQ---------------TVEGLLETVAPDGRIHTTYSQTAAA-TGRL 673

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E    I         RG  +AD             +A     L+ A
Sbjct: 674 SSLHPNLQNIPVRTEAGRRI---------RGVFVADE------------VAGEQAVLLSA 712

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++ F    D+V+ EQRA  K M   L
Sbjct: 713 DYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGL 772

Query: 440 GY 441
            Y
Sbjct: 773 AY 774


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 29/163 (17%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L++L S+ +  L+ +  +E     GR+  +    GA+ TGR S      QN+P   R++E
Sbjct: 645 LSKLKSTYTDALQTHINAET----GRVHTSYSITGAN-TGRLSSTDPNLQNIPI--RTDE 697

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                      G  I           R   IA  GK LV  D + IE R+LA +A  D  
Sbjct: 698 -----------GRKI-----------REAFIADEGKVLVALDYSQIELRILAHVANIDAL 735

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +AF +G DI+  T ++ FN P+D+++ + R   K +   + Y
Sbjct: 736 KQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIY 778


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 32/164 (19%)

Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341
           A  KLN+     L + ++ DGR+        A RTGR S      QN+P R E   ++  
Sbjct: 566 AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 622

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  R+  +A  G  LV AD + IE R+LA + G++   +A
Sbjct: 623 -----------------------RAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQA 659

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           F  GEDI+ +T AK +  P+++V+   R+  K +   + Y  GA
Sbjct: 660 FLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINFGIMYGKGA 703


>gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  ++ AD + IE R++A I+ ++  ++AF+ G D++  T A+ F  P+ +
Sbjct: 676 VRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRAFSEGLDVHRATAAEVFGMPLAE 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   KV+   L Y  GA     +A++ G++
Sbjct: 736 VTSEQRRYAKVINFGLIYGMGA---YGLAANLGIE 767


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 26/174 (14%)

Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            VR+      G   L+ AD + IE R+LA ++G+   I AF  G+DI+  T A+ F  P+
Sbjct: 633 AVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRQGQDIHARTAAEVFGVPL 692

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           D V+ EQR   K +   + Y     G A+         G  + ++ +      TF D   
Sbjct: 693 DAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGVRTFLDKIV 752

Query: 478 AESH--------------------HLWMQDQYPE-FAVKDKLIGTACELVKKAW 510
           A++H                      +MQ  + E  A+   + GTA +L+K A 
Sbjct: 753 ADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKIAM 806


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ +   + AFA+ +DI+  T A+ F   +DK
Sbjct: 689 IRQAFIAPPGYRIVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVSLDK 748

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 749 VSGEQRRSAKAINFGLIY 766


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           G Y   D + T +L  ++ P L   E  L +              +   G +ID  ++  
Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 556

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + IAQ   +L++   ++       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614

Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322
            + +LA D  L ++      + KL +T ++ +        GR+  T      + TGR S 
Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P   R+EE                         +R   IA     +V AD +
Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y
Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF NGED++  T A+ F    + 
Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           VS EQR   K +   L Y  G
Sbjct: 749 VSPEQRRYAKTINFGLIYGMG 769


>gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 24/125 (19%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P   RSEE                         +R   IA  G K+
Sbjct: 664 TGRLSSSDPNLQNIPT--RSEE----------------------GRKIRQAFIAPQGFKV 699

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE R++A ++ +     AF++G D++ +T A+ F+ P+++V+ +QR   K + 
Sbjct: 700 VAADYSQIELRIMAHLSADAGLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAIN 759

Query: 437 LALGY 441
             L Y
Sbjct: 760 FGLIY 764


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A I+ +   I+AF N  D++  T +  FN PI++
Sbjct: 677 IRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSLIEAFNNDVDVHSATASMMFNVPIEE 736

Query: 424 VSKEQRAIGKVMELALGY 441
           V+K+ R   K +   L Y
Sbjct: 737 VNKDHRRNAKAINFGLIY 754


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           G Y   D + T +L  ++ P L   E  L +              +   G +ID  ++  
Sbjct: 494 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 553

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + IAQ   +L++   ++       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 554 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 611

Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322
            + +LA D  L ++      + KL +T ++ +        GR+  T      + TGR S 
Sbjct: 612 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 670

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P   R+EE                         +R   IA     +V AD +
Sbjct: 671 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 706

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y
Sbjct: 707 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 765


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L ++V+ DGR+  T Q   A+ TGR S      QN+P       I T+T + + +G  + 
Sbjct: 608 LLKSVADDGRVHTTFQQTVAA-TGRLSSTDPNLQNIP-------IRTETGRRIRQGFVVG 659

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           + L                  L+ AD + IE R++A ++ +D  I AF  GED++    A
Sbjct: 660 EGL----------------DTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGA 703

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F   ID+V+ + R+  K M   L Y
Sbjct: 704 RVFGVSIDEVTPQMRSKVKAMSYGLAY 730


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G KL+ AD   IE R+LA ++G++   +AF  G+DI+  T A+ F  P ++
Sbjct: 684 IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQ 743

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K++   + Y
Sbjct: 744 VTPEQRRRAKMVNYGIPY 761


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++ +   + AF+ G DI+  T A+ F   +D+
Sbjct: 683 IRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSKGADIHRATAAEVFKVELDQ 742

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           VS +QR   K +   L Y  G   F  +A   G+  +  +Q ++
Sbjct: 743 VSDDQRRSAKAINFGLIY--GMSAF-GLAKQLGIARKDAAQYIE 783


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           G Y   D + T +L  ++ P L   E  L +              +   G +ID  ++  
Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 556

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + IAQ   +L++   ++       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614

Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322
            + +LA D  L ++      + KL +T ++ +        GR+  T      + TGR S 
Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P   R+EE                         +R   IA     +V AD +
Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y
Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G K+V AD + IE R++A ++ +   + AFANG D++  T ++ F   ++ 
Sbjct: 691 VREAFIARPGYKIVAADYSQIELRIMAHLSSDSGLLHAFANGLDVHKATASEVFGVALEH 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 751 VTSEQRRSSKAINFGLIY 768


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G KL+ AD   IE R+LA ++G++   +AF  G+DI+  T A+ F  P ++
Sbjct: 684 IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQ 743

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K++   + Y
Sbjct: 744 VTPEQRRRAKMVNYGIPY 761


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+    PI+ 
Sbjct: 697 IRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPIES 756

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 757 VTTEQRRRAKAINFGLIY 774


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           G Y   D + T +L  ++ P L   E  L +              +   G +ID  ++  
Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 556

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + IAQ   +L++   ++       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614

Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322
            + +LA D  L ++      + KL +T ++ +        GR+  T      + TGR S 
Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P   R+EE                         +R   IA     +V AD +
Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y
Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 38/185 (20%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 616 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 659

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG----KKL 376
           S      QN+P       I T+       G  I D        V S    S G     +L
Sbjct: 660 SSTEPNLQNIP-------IRTEA------GRRIRDAF-----VVESRPPGSGGGAVFTEL 701

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R++A ++ +   I+AF  GED++    ++AF+ PID+V+ + R   K M 
Sbjct: 702 MTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMS 761

Query: 437 LALGY 441
             L Y
Sbjct: 762 YGLAY 766


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L EAV  DGR+  T    GA+ TGR S      QN+P +                  
Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTD---------------- 613

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +R+      G + L+ AD + IE RV+A ++ +   I+A+A+GED++ 
Sbjct: 614 --------AGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLHN 665

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K +   L Y
Sbjct: 666 YVGSRVFDVPVDEVTPELRRRVKALSYGLVY 696


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + ++ DGR+  T     A+ TGR S      QN+P       I T   + + +G    
Sbjct: 610 LIKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIP-------IRTAEGRRIRKG---- 657

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        I+    + L+ AD + IE R++A ++G++  I AF +G D +  T A
Sbjct: 658 ------------FIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAA 705

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F  P D+V+ E RA  K M   L Y
Sbjct: 706 RVFGLPPDQVTPELRARIKAMNYGLAY 732


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A ++ +   + AFA GEDI+  T A+ F   +++
Sbjct: 686 IRQAFVAEKGYKLLAADYSQIELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEE 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VNTDQRRSAKAINFGLIY 763


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           G Y   D + T +L  ++ P L   E  L +              +   G +ID  ++  
Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHA 556

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + IAQ   +L++   ++       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614

Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322
            + +LA D  L ++      + KL +T ++ +        GR+  T      + TGR S 
Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P   R+EE                         +R   IA     +V AD +
Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y
Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768


>gi|297626697|ref|YP_003688460.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++TL ++ S DGR+  T      + TGR S      QN+P                    
Sbjct: 604 IDTLIKSTSDDGRIH-TTYVQTVAGTGRLSSTDPNLQNIP-------------------- 642

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
            I  P G     +R   +   G + L+ AD + IE RV+A  +G+   I AFA+G D + 
Sbjct: 643 -IRTPEGRR---IRDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHS 698

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T +  F+ P+++V+  QR+  K M   L Y
Sbjct: 699 MTASHVFDVPVEQVTPAQRSSVKQMNYGLAY 729


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +LV AD + IE R++A ++ ++  + AF   EDI+  T  + F TP++ 
Sbjct: 664 IRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEIFRTPLED 723

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 724 VTPEQRRSAKAINFGLIY 741


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G  +V AD + IE R++A ++ +   I AF+ G+DI+ +T A+ F  P+++
Sbjct: 692 IRQAFIPREGFTMVAADYSQIELRIMAHLSKDQGLINAFSEGKDIHRSTAAEIFGLPLEQ 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTSEQRRSAKAINFGLIY 769


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 34/209 (16%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           LK +L H + T+L       R+   G        L + V+ D R+  T     A+ TGR 
Sbjct: 583 LKHLLEHRDATRL-------RVTVEG--------LQKTVADDQRIHTTFNQTVAA-TGRL 626

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E   +I    + A         P+ + S  +         + L+ A
Sbjct: 627 SSTDPNLQNIPVRTEAGRQIRHAFVVA-------PGPVAVGSGNIEF-------ESLMTA 672

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++AF  P+D+V  + R+  K M   L
Sbjct: 673 DYSQIEMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGL 732

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            Y  G   +  +A+  G+  ++  Q +++
Sbjct: 733 AY--GLSAYG-LAAQLGISREEAKQQMEA 758


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 54/221 (24%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V++DGR+  T     A+ TGR 
Sbjct: 605 LQHLLAHRDATRLK---------------VTVDGLLNSVAADGRIHTTFNQTIAA-TGRL 648

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P       I T+       G  I D            ++      L+ AD
Sbjct: 649 SSTEPNLQNIP-------IRTEA------GRRIRD----------GFVVGEGYADLMTAD 685

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   I+AF  GED++    ++AF+ P+D+V+ E R   K M   L 
Sbjct: 686 YSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLA 745

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           Y              GL     SQ +K  ST E  EQ E +
Sbjct: 746 Y--------------GLSAYGLSQQLK-ISTEEAKEQMEQY 771


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G KL+ AD   IE R+LA ++G++   +AF  G+DI+  T A+ F  P ++
Sbjct: 684 IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQ 743

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K++   + Y
Sbjct: 744 VTPEQRRRAKMVNYGIPY 761


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 38/206 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     ID+
Sbjct: 697 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVAIDQ 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           V+ EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 757 VTTEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 813

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509
             A S   +++  Y      PE               A+   + GTA +++KKA      
Sbjct: 814 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 873

Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534
           W +A+  G ++L   + +     VQE
Sbjct: 874 WIQAEGDGRVKLLMQVHDELVFEVQE 899


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 29/157 (18%)

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADP----------LGLASDCVRSCIIASN--GKK 375
           Q  P+  R   I  QT+ A  R  + +DP          LGLA   VR   IA N  G +
Sbjct: 619 QVHPQTGRVHTIFHQTVAATGRLSS-SDPNLQNIPARGELGLA---VRRAFIADNRPGYR 674

Query: 376 -------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
                  L+  D + IE R++A  + +   ++AFA G+DI+  T ++ F  P+D V+ E 
Sbjct: 675 IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEM 734

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462
           R I KV+   + Y  G + +  +A   G+   D Q+F
Sbjct: 735 RRIAKVVNFGIMY--GMQAYG-LARDTGMSRQDAQRF 768


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA+ G  L+ AD + IE RVLA I G+   I+ F  G DI+  T A+ F    + 
Sbjct: 727 VRRGFIAAPGHVLIAADYSQIELRVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNA 786

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V K QR I K +   + Y  G   F  +A   G+  +Q
Sbjct: 787 VDKNQRRIAKTVVFGVIY--GISPFG-LAQRLGISREQ 821


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++VS DGR+  T +   A+ TGR S      QN+P   R+EE           G 
Sbjct: 614 VDGLLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIPI--RTEE-----------GR 659

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           R+ ++    + L+ AD + IE R++A ++ +D  I+AF +G D +  
Sbjct: 660 RIR----------RAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHDFHAA 709

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T +  F  P+ +V+ +QR   K M   L Y
Sbjct: 710 TASSVFGVPVAEVTADQRRKIKAMNYGLAY 739


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  +V AD + IE R++A ++G+   I AF  G DI+  T ++ F  P++ 
Sbjct: 693 VREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGLIAAFREGRDIHRATASEVFGVPLEA 752

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 753 VSAEQRRYAKTINFGLIY 770


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + +  D GR+  +    GAS TGR+S      QN+P   RSEE             
Sbjct: 647 DALQDHIDPDTGRVHTSYLQTGAS-TGRFSSSDPNLQNIPV--RSEE------------- 690

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A+ G +LV  D + IE R+LA +AG +   +AF +G DI+  
Sbjct: 691 ---------GRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLKQAFRDGHDIHAM 741

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P+ +++ E R   K +   + Y
Sbjct: 742 TASEMFNVPLAEMTPEIRRQAKAINFGVIY 771


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 29/157 (18%)

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADP----------LGLASDCVRSCIIASN--GKK 375
           Q  P+  R   I  QT+ A  R  + +DP          LGLA   VR   IA N  G +
Sbjct: 619 QVHPQTGRVHTIFHQTVAATGRLSS-SDPNLQNIPARGELGLA---VRRAFIADNRPGYR 674

Query: 376 -------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
                  L+  D + IE R++A  + +   ++AFA G+DI+  T ++ F  P+D V+ E 
Sbjct: 675 IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEM 734

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462
           R I KV+   + Y  G + +  +A   G+   D Q+F
Sbjct: 735 RRIAKVVNFGIMY--GMQAYG-LARDTGMSRQDAQRF 768


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 695 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 754

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 755 VSADERRAAKAINFGLMY 772


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 695 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 754

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 755 VSADERRAAKAINFGLMY 772


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 29/157 (18%)

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADP----------LGLASDCVRSCIIASN--GKK 375
           Q  P+  R   I  QT+ A  R  + +DP          LGLA   VR   IA N  G +
Sbjct: 619 QVHPQTGRVHTIFHQTVAATGRLSS-SDPNLQNIPARGELGLA---VRRAFIADNRPGYR 674

Query: 376 -------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
                  L+  D + IE R++A  + +   ++AFA G+DI+  T ++ F  P+D V+ E 
Sbjct: 675 IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEM 734

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462
           R I KV+   + Y  G + +  +A   G+   D Q+F
Sbjct: 735 RRIAKVVNFGIMY--GMQAYG-LARDTGMSRQDAQRF 768


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 687 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVSAFESGADVHRATAAEVFGRTIDT 746

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 747 VSGDERRAAKAINFGLMY 764


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ ++    + L+ AD + IE R++A ++G++  I+AF +GED++    A+AF  P+ +V
Sbjct: 645 RAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEV 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             E R   K M   L Y  G   F  +AS  G+
Sbjct: 705 DPELRRRIKAMSYGLAY--GLSAFG-LASQLGI 734


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A++G KL+ AD A IE  +LA  + ++  +KAF  G D++  T A  FN P++ 
Sbjct: 712 IRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFRQGTDVHAATAALIFNVPVEN 771

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V  + R I KV+   + Y  G   F+
Sbjct: 772 VVPDMRRIAKVINFGVMY--GMSAFR 795


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C +A+ GKKLV AD + IE RVLA ++GE   + AF  G DI+  T A  F+     
Sbjct: 639 MRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEAD 698

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
           +  ++R   K +   L Y  G +
Sbjct: 699 IRPDERRQAKTINFGLLYGMGPQ 721


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 695 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 754

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 755 VSADERRAAKAINFGLMY 772


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +  KLV AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ 
Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R   K +   + Y
Sbjct: 703 VTSELRGAAKAVNFGIIY 720


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNLDVHRATAAEVFGVALEA 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 770


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA     +V AD + IE R++A ++G+   ++AFA GED++  T A+ F     +
Sbjct: 679 IRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGEDVHRATAAEVFGVAPSE 738

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 739 VSSEQRRYAKVINFGLIY 756


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +  KLV AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ 
Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R   K +   + Y
Sbjct: 703 VTSELRGAAKAVNFGIIY 720


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ ++  + AFAN EDI+  T A+ F    + 
Sbjct: 689 IREAFIAPKGSHIVSADYSQIELRIMAHLSKDEGMLAAFANNEDIHRHTAAEIFGVEREN 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V  EQR   KV+   L Y
Sbjct: 749 VDSEQRRYAKVINFGLIY 766


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +  KLV AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ 
Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R   K +   + Y
Sbjct: 703 VTSELRGAAKAVNFGIIY 720


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +  KLV AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ 
Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R   K +   + Y
Sbjct: 703 VTSELRGAAKAVNFGIIY 720


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 137/314 (43%), Gaps = 54/314 (17%)

Query: 141 DSPPYDCTRAN-HVQAWQLF-GEYCKRDVEATRELFKR-LIP-LSDGERDLWLLDQTIND 196
           D+ PY    A+  ++ WQ F  E  +R V    E  +R L+P L++ ER+          
Sbjct: 500 DAVPYAAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERN---------- 549

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLV 254
            G ++D D + ++    AQ+   L+++I  L      + S +Q     +   L   ++L 
Sbjct: 550 -GIKVDRDTLSRMSNAFAQKMAALEDEIHALAGQPFNVGSPKQ-----LGEILFDKLELP 603

Query: 255 DMSEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRG 307
              +G   +  + ++I + LA +  L  L      + KL     + L + ++ D GR+  
Sbjct: 604 GGKKGKTGAYATGADILEDLATEHALPALVLDWRQLSKLKSTYTDALQDHINPDTGRVHT 663

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +    GA+ TGR +      QN+P   RSEE                         +R  
Sbjct: 664 SYIQTGAN-TGRMASSDPNLQNIPV--RSEE----------------------GRRIREA 698

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +   G  L+  D + IE R+LA +AG D    AFA G+DI+  T ++ F+ P+++++ +
Sbjct: 699 FVPEQGNVLLSLDYSQIELRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTAD 758

Query: 428 QRAIGKVMELALGY 441
            R   K +   + Y
Sbjct: 759 IRRQAKAINFGVIY 772


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 47/296 (15%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYAL 241
           ER L  +   +  RG  +D  ++ +L   +AQ   +L+E+I +L    I   S +Q   L
Sbjct: 600 ERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQ---L 656

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI-----LNRLASSGSAILKL---- 292
              LF   G     +  G+       S   QL +DL      L R       + KL    
Sbjct: 657 GDILFGRMG-----LPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTY 711

Query: 293 -NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L   +  D R   T     A+ TGR S      QN+P   R+ E             
Sbjct: 712 TDALPGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIP--VRTAE------------- 756

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R+  IA  G +LV AD + IE RVLA +A      +AFA+G DI+  
Sbjct: 757 ---------GRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAI 807

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           T ++ FN P++ +  E R   K +   + Y  G   F  +A+   +  ++ S  +K
Sbjct: 808 TASEMFNVPVEGMPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEASNYIK 860


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +A+ SDGR+  T Q   A+ TGR S      QN+P   R+EE + +  QA   GE   
Sbjct: 628 LRKAIQSDGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARNEEGM-RIRQAFTVGE--- 680

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                  +C            L+ AD + IE R++A ++G+   I+AF +GED++    A
Sbjct: 681 -----GYEC------------LMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAA 723

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
                 +D V+ +QR+  K M   L Y
Sbjct: 724 LVHGIDVDDVTAQQRSHVKAMSYGLAY 750


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 754 VSGDERRAAKAINFGLMY 771


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 754 VSGDERRAAKAINFGLMY 771


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 754 VSGDERRAAKAINFGLMY 771


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L   V+ DGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 617 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 659

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 660 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 711

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K FN PID V+ E R   K M   L Y
Sbjct: 712 YVGSKVFNVPIDGVTPELRRQVKAMSYGLVY 742


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G ++V AD + IE R++A ++ ++  +KAFA+GEDI+  T A+ F   +  
Sbjct: 689 VREAFIAPAGWQIVSADYSQIELRIMAHLSDDEGMLKAFASGEDIHRATAAEVFGVELAA 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 749 VTSDQRRAAKAINFGLIY 766


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 754 VSGDERRAAKAINFGLMY 771


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+     I++
Sbjct: 717 IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQ 776

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 777 VSSEQRRRAKAVNFGLIY--GMSAFG-LAKQLGIPRGEAQTYMDKYFERYPGVMQYMEDT 833

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
               S H +++  +      PE               A+   + GTA +++KKA
Sbjct: 834 RSNASQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKA 887


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L   V+ DGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 634

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 635 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 686

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K FN PID V+ E R   K M   L Y
Sbjct: 687 YVGSKVFNVPIDGVTPELRRQVKAMSYGLVY 717


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
          Length = 904

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  GK L+ AD + IE R++A ++ +    +AFA GEDI+  T ++ F  P+ +
Sbjct: 666 VREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAE 724

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V  EQR   K +   L Y  G  VF  +AS+ G+
Sbjct: 725 VGAEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEG 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTTEQRRSAKAINFGLIY 769


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L   V+ DGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 634

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 635 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 686

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K FN PID V+ E R   K M   L Y
Sbjct: 687 YVGSKVFNVPIDGVTPELRRQVKAMSYGLVY 717


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 47/77 (61%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++KV
Sbjct: 634 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693

Query: 425 SKEQRAIGKVMELALGY 441
           + E R + K +   + Y
Sbjct: 694 TPEMRRVAKAVNFGIIY 710


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  GK L+ AD + IE R++A ++ +    +AFA GEDI+  T ++ F  P+ +
Sbjct: 666 VREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAE 724

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V  EQR   K +   L Y  G  VF  +AS+ G+
Sbjct: 725 VGAEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+TL      DGR+  T      + TGR S      QN+P   RSE              
Sbjct: 647 LDTLGPLRRHDGRVHTTYN-QTITATGRLSSSSPNLQNIP--TRSE-------------- 689

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                LG A   V+       G   V  D + IE R+LA ++G++  + AF  GED +  
Sbjct: 690 -----LGHA---VKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAE 741

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T A+ F  P+D+V+ + R+  K +   + Y
Sbjct: 742 TAARVFGVPVDEVTPQLRSRAKAVNFGIVY 771


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 45/261 (17%)

Query: 201 IDLDLVLKL----QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-----GI 251
           I++ L+  L    QE +  ER +L E   +L  GI +  ++ Y    + F I      G 
Sbjct: 533 IEMPLIYSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQETGHEFNINSPKQLGE 592

Query: 252 DLVDMSE--GTLKSILSHSN----ITQLAKDLILNRLASSGSAILKLNT-----LSEAVS 300
            L +  E  G  K+   +S     + +LA D  + +       + KLN+     L+  + 
Sbjct: 593 ILFEQMELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLNSTYAEGLAAYIG 652

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DGR+ G       + TGR S      QN+P +            AL R           
Sbjct: 653 EDGRIHGKFN-QTITATGRISSTEPNLQNIPVR-----------MALGRE---------- 690

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   +   G   V AD + IE R+LA ++G++  I+A+ + +DI+  T ++ F+ P
Sbjct: 691 ---IRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASQVFHVP 747

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           +D+V+  QR   K +   + Y
Sbjct: 748 LDEVTPLQRRNAKAVNFGIVY 768


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  GK L+ AD + IE R++A ++ +    +AFA GEDI+  T ++ F  P+ +
Sbjct: 666 VREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAE 724

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V  EQR   K +   L Y  G  VF  +AS+ G+
Sbjct: 725 VGAEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GK LV  D + IE R+LA +AG +   +AF +GEDI+  T ++ F+ P+D+
Sbjct: 692 IREAFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDE 751

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 752 MTPDVRRQAKAINFGVIY 769


>gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA++G K+V AD + IE R++A ++ +   + AFANG D++  T A+ F   +D 
Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVFGVELDD 730

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K +   L Y
Sbjct: 731 VTTDMRRKAKAVNFGLIY 748


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF +GED++  T A+ F T  + 
Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPEN 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   K +   L Y  G      +A   G+D
Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 29/153 (18%)

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           L+TL   V+   GR+  +    G   TGR S      QNLP + E  +EI          
Sbjct: 610 LDTLPTLVNPVTGRIHASYHQTGTG-TGRLSSSNPNMQNLPIKGEEGKEI---------- 658

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          R C++      K++ AD + IE RVLA  + ++  I AF NGED+
Sbjct: 659 ---------------RKCVVPQKSDWKIISADYSQIELRVLAHFSEDERLISAFKNGEDV 703

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  T ++ +   +  V+ E R +GK++  ++ Y
Sbjct: 704 HALTASRLYGVSVKDVTPEMRQVGKMVNFSIIY 736


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA++G K+V AD + IE R++A ++ +   + AFANG D++  T A+ F   +D 
Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVFGVDLDD 730

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K +   L Y
Sbjct: 731 VTTDMRRKAKAVNFGLIY 748


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 20/148 (13%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L +A + DGR+  T Q  GA+ TGR S      QN+P R E    I         RG  I
Sbjct: 712 LQKAATEDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRTEEGRRI---------RGAFI 761

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             P           I     + L+ AD + IE R++  +A ++  I A+  GED++    
Sbjct: 762 VAP---------EPIDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVG 812

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F    + V+ EQR+  K M   L Y
Sbjct: 813 SEVFGVAPEDVTPEQRSKVKAMSYGLAY 840


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  +  DGR+ G       + TGR S      QN+P R E            L R    
Sbjct: 588 LANYIQDDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   I   G + V AD + IE RVLA  +G++  I+A+    DI+  T 
Sbjct: 631 ---------LIRKVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITA 681

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+ P D+V+ +QR   K +   + Y
Sbjct: 682 SQVFHIPFDEVTPQQRRNAKAVNFGIVY 709


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF +GED++  T A+ F T  + 
Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPEN 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   K +   L Y  G      +A   G+D
Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L H + T+L                + ++ L + V+ DGR+  T     A+ TGR 
Sbjct: 608 LEHLLEHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 651

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +              + G  I D            ++    + L+ AD
Sbjct: 652 SSTEPNLQNIPVRT-------------DAGRQIRD----------GFVVGEGYETLLTAD 688

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I+AF  GED++    ++AF  PI++V+ E R   K M   L 
Sbjct: 689 YSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLA 748

Query: 441 Y 441
           Y
Sbjct: 749 Y 749


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 24/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  T      + TGR S      QN+P                     I  P G  S 
Sbjct: 655 GRIHTTF-MQAVTATGRLSSNQPNLQNIP---------------------IRTPRG--SQ 690

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             ++ +       L+ AD + IE R++A ++ E   I+AF +G+DI+ +T AK F  P++
Sbjct: 691 IRKAFVPRDENYTLLSADYSQIELRIIAALSEETHMIEAFLDGQDIHRSTAAKVFGVPLE 750

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+KEQR+  K +   + Y
Sbjct: 751 AVTKEQRSHAKTVNFGIIY 769


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L  +V SDGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 657 LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 699

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 700 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 751

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+ PID V+ E R   K M   L Y
Sbjct: 752 YVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 782


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L +AV SDGR+  T     AS TGR S      QN+P       + TQ         
Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP-------VRTQD-------- 641

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 642 ---------GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHN 692

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F  P+D+V+ E R   K M   L Y
Sbjct: 693 YVGSRVFEVPVDQVTPELRRRVKAMSYGLVY 723


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G +LV AD + IE RVLA +A      +AFA+G DI+  T ++ FN P++ 
Sbjct: 754 IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+   +  ++ S  +K
Sbjct: 814 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEASNYIK 854


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 41/182 (22%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L ++L H ++T+L                + +  L + V  DGR+  T     A+ TGR 
Sbjct: 591 LLALLRHRDVTRLR---------------VTIEGLLKTVQDDGRIHTTFNQTIAA-TGRL 634

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P   R+EE          RG             +R   +   G + L+ A
Sbjct: 635 SSTEPNLQNIPV--RTEE---------GRG-------------IRKGFVVGGGFESLMTA 670

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF +G D +  T A+ F    D VS EQRA  K M   L
Sbjct: 671 DYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYGL 730

Query: 440 GY 441
            Y
Sbjct: 731 AY 732


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L +AV SDGR+  T     AS TGR S      QN+P       + TQ         
Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP-------VRTQD-------- 641

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 642 ---------GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHN 692

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F  P+D+V+ E R   K M   L Y
Sbjct: 693 YVGSRVFEVPVDQVTPELRRRVKAMSYGLVY 723


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 32/163 (19%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+QR   K +
Sbjct: 643 FLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAV 702

Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471
              L Y     G +K+ K   S   GL                  ++Q S+N K T+   
Sbjct: 703 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 762

Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 DWE +       +      AV  ++ G+A EL+K A 
Sbjct: 763 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 801


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L  +V SDGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 616 LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 658

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 659 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 710

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+ PID V+ E R   K M   L Y
Sbjct: 711 YVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 741


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L+  +  DG++         + TGR S      QN+P                     
Sbjct: 593 DGLAAFIQEDGKIHSIFH-QKVTATGRLSSSDPNLQNIP--------------------- 630

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I  PLG A   +R   +  +G   V AD + IE RVLA +AG++  I A+ +GEDI+  T
Sbjct: 631 IRMPLGRA---IRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEHLIDAYRHGEDIHRMT 687

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            ++ F  P ++V+   R   K +   + Y
Sbjct: 688 ASQVFGVPFEEVTPLLRRSAKAVNFGIVY 716


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G KL+ AD + IE R++A +A +   + AF N  D++  T A+ F  P+++
Sbjct: 675 IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQ 734

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 735 VSNDQRRSAKAINFGLIY 752


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ ++  ++AF  G+D++  T A+ FN    +
Sbjct: 698 IREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLE 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ +QR + KV+   L Y  G   F  +AS+ G+
Sbjct: 758 VTPDQRRVAKVINFGLIY--GMSAFG-LASNLGI 788


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  +  AD + IE R++A I+G++  + AF  G D++  T A+ F   +++
Sbjct: 702 VREAFVAPAGSVIASADYSQIELRIMAHISGDESLLHAFTAGLDVHRATAAEVFGVALEQ 761

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 762 VSSEQRRYAKVINFGLIY 779


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 32/163 (19%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+QR   K +
Sbjct: 641 FLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAV 700

Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471
              L Y     G +K+ K   S   GL                  ++Q S+N K T+   
Sbjct: 701 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 760

Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 DWE +       +      AV  ++ G+A EL+K A 
Sbjct: 761 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 799


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E ++ + GR+  +    GA+ TGR +      QN+P   RSEE             
Sbjct: 648 DALQEHINKETGRVHTSYVIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 691

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK +V  D + IE R+LA +AG D   +AF  G+DI+  
Sbjct: 692 ---------GRRIREAFVAPEGKTIVSLDYSQIELRILAHMAGIDALKEAFREGQDIHAM 742

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P+++++ E R   K +   + Y
Sbjct: 743 TASEMFNVPMEEMTPEIRRQAKAINFGVIY 772


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 688 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 747

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 748 VSGDERRAAKAINFGLMY 765


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALED 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 770


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 124/306 (40%), Gaps = 73/306 (23%)

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
           I+ P  +  ++  V  + L       D E  +EL +++      +R   +LD+   + GY
Sbjct: 474 IEMPLVEVLKSMEVSGFTL-------DKEVLKELSQKI-----NDRIAEILDKIYKEAGY 521

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           + +++   +L E + +          KL   +I+ ++  Y+                   
Sbjct: 522 QFNVNSPKQLSEFLFE----------KLNLPVIKKTKTGYS---------------TDSE 556

Query: 260 TLKSILSHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
            L+ ++ ++NI     D+I    L +L S+      +N     +  + R+    +    +
Sbjct: 557 VLEQLVPYNNIVN---DIIEYRQLTKLKSTY-----INGFLPLMDENNRVHSNFK-QMVT 607

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P +E                              R+ I  +    
Sbjct: 608 STGRISSTEPNLQNIPIREE-----------------------FGRQIRRAFIPRTKDGY 644

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++KV+ E R   K +
Sbjct: 645 IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAV 704

Query: 436 ELALGY 441
              + Y
Sbjct: 705 NFGIIY 710


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L H + T+L                + ++ L + V+ DGR+  T     A+ TGR 
Sbjct: 608 LEHLLEHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 651

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +              + G  I D            ++    + L+ AD
Sbjct: 652 SSTEPNLQNIPVRT-------------DAGRQIRD----------GFVVGEGYETLLTAD 688

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I+AF  GED++    ++AF  PI++V+ E R   K M   L 
Sbjct: 689 YSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLA 748

Query: 441 Y 441
           Y
Sbjct: 749 Y 749


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G KL+ AD + IE R++A +A +   + AF N  D++  T A+ F  P+++
Sbjct: 692 IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQ 751

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 752 VSNDQRRSAKAINFGLIY 769


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T A+ F   ID 
Sbjct: 688 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 747

Query: 424 VSKEQRAIGKVMELALGY 441
           VS ++R   K +   L Y
Sbjct: 748 VSGDERRAAKAINFGLMY 765


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + ++ D GR+  +    GAS TGR +      QN+P   RSEE             
Sbjct: 646 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE------------- 689

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IA       AF +G+DI+  
Sbjct: 690 ---------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKTAFDDGQDIHAM 740

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+ P+D+++ E R   K +   + Y
Sbjct: 741 TASEMFDVPLDEMTPEIRRQAKAINFGVIY 770


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALED 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 770


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++G+   ++AFA+G DI+  T A+ F+T    
Sbjct: 675 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDANMLRAFADGIDIHRATAAEIFSTGAAD 734

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   KV+   L Y  G   F  +A + G++
Sbjct: 735 VTTEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 766


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   I AF +GED++  T A+ F T  + 
Sbjct: 668 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPEN 727

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS EQR   K +   L Y  G      +A   G+D
Sbjct: 728 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 759


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 166/395 (42%), Gaps = 53/395 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L DE+++ +  N  ++  +F + +GI +           A   GL     +A L+  +  
Sbjct: 415 LEDESILKIGQNMKYDAKIFAQ-VGITVAPIDDTMLMSYAMHGGLHGHGMDA-LSERYLG 472

Query: 121 HLTK-----MEEGKALIARFCKGSI-DSPPYDCTRAN-HVQAWQLFGEYCKRDVEATREL 173
           H        +  GK+ I  F K  + D+ PY    A+  ++ WQ F     R  + TR +
Sbjct: 473 HTPLPIKPLLGSGKSAIT-FDKVPLNDAVPYAAEDADVTLRLWQQFKPALHR-AQVTR-V 529

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           ++ L      ER +  +   +   G ++D D + ++    +Q+   L+++I  L   + R
Sbjct: 530 YETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQKMAALEDEIYTL---VGR 580

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKL 292
                   ++   L   + L    +G   +  + +++ + LA +  L R       + KL
Sbjct: 581 KFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDLATEHELPRRILDWRQLSKL 640

Query: 293 -----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L + ++ D GR+  +    GAS TGR +      QN+P   RSEE        
Sbjct: 641 KSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE-------- 689

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  GK LV  D + IE R+LA IA       AF +G+
Sbjct: 690 --------------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKAAFDDGQ 735

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           DI+  T ++ F+ P+D+++ E R   K +   + Y
Sbjct: 736 DIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALED 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 770


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 56/222 (25%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H + T+L                + ++ L  +V+SDGR+  T     A+ TGR 
Sbjct: 609 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 652

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           S      QN+P       I T+                 A    R   +  +G  +L+ A
Sbjct: 653 SSTEPNLQNIP-------IRTE-----------------AGRRTRDAFVVGDGYAELMTA 688

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   I+AF  GED++    ++AF  PI++V+ E R   K M   L
Sbjct: 689 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGL 748

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            Y              GL     SQ +K  ST E  EQ +++
Sbjct: 749 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 775


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S+ + L++ AD + +E R++A ++G++  I AFA+GEDI+  T AK FN  +D
Sbjct: 718 IRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIAAFAHGEDIHAATAAKLFNKTLD 777

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E+R   K     + Y
Sbjct: 778 EVTSEERRRAKTANFGIIY 796


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   +  DG++  +      + TGR S      QN+P + E   EI              
Sbjct: 596 LKAVIDKDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREI-------------- 640

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   +  +   +++ AD + IE RVLA IA ++  I AF N  DI+  T
Sbjct: 641 -----------RKVFVPEDENSIILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKT 689

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PID+V+K QR+  K +   + Y  G
Sbjct: 690 ASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIG 721


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 29/176 (16%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G++++ AD + IE R++A ++ +   ++AF+ G D++  T A+ F   ++ 
Sbjct: 672 IRQAFVAPEGRRILAADYSQIELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELND 731

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLD-----LQQFSQNVKSTSTFEDWEQ 477
           V+ +QR   K +   L Y  G   F      H G       ++++       + +    +
Sbjct: 732 VTVDQRRKAKAINFGLIY--GMSAFGLARQLHIGRGEAQEYIERYFSRYPGVADYMARTR 789

Query: 478 AESH-------HLWMQDQYPEFAVKDK--------------LIGTACELVKKAWRA 512
           AE+H       H   + Q PE   K+K              + GTA +++KKA  A
Sbjct: 790 AEAHERGYVETHFGRRLQLPEINAKNKQRQLAAERTAINAPMQGTAADIIKKAMIA 845


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 29/172 (16%)

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
           Q    L+L+R  +    I++  TL +A + SDGR+  T +   A+ TGR S      QN+
Sbjct: 643 QFLDALLLHREKNKLKQIVQ--TLIDATNGSDGRIHTTFEQTVAA-TGRLSSVDPNLQNI 699

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389
           P                NR     DP G     +RS  +   G + L+ +D + +E R++
Sbjct: 700 P----------------NR-----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIM 735

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y
Sbjct: 736 ADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITSDQRSHVKAMSYGLAY 787


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ ++ +  + L+ AD + IE R++A ++G++  I+AF +GED++    A+AF  P+ +V
Sbjct: 706 RAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEV 765

Query: 425 SKEQRAIGKVMELALGY 441
             E R   K M   L Y
Sbjct: 766 DPELRRRIKAMSYGLAY 782


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ +   I AF  G+DI+ +T A+ F   +D+
Sbjct: 694 IRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDE 753

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 754 VTSEQRRNAKAINFGLIY 771


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 119/298 (39%), Gaps = 46/298 (15%)

Query: 156 WQLF-GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           W LF        + A     +R +P   G+ +           G  +D  ++ +L    A
Sbjct: 580 WHLFRARIAAEGMAAVYATLERPMPAVLGQMEF---------NGIEVDRTVLSRLSGDFA 630

Query: 215 QERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSH 267
           Q   +L+++I +L      I S +Q   L    F + G       +       L+ ++S 
Sbjct: 631 QSLARLEDEIYELAGQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLEDLVSS 690

Query: 268 SNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
            ++T+  + L    L     A LK    ++L + + +D GR+  T     ++ TGR S  
Sbjct: 691 EDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIH-TCYSLASTSTGRLSST 749

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P + R   +                        +RS  IA+ GKKL+ AD + 
Sbjct: 750 EPNLQNIPIRTREGRM------------------------IRSAFIAAPGKKLISADYSQ 785

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE RVLA +A       AFA G DI+  T ++ F  P+  +  E R   K +   + Y
Sbjct: 786 IELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIY 843


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R C+I S  G     AD + IE RVLA ++G+   I+ F +  DI+  T A  F  P D
Sbjct: 630 IRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTETAAMIFGLPAD 689

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            V+KE R   K +   L Y  G  VF  +AS  G D
Sbjct: 690 AVTKELRRSAKTVSFGLIY--GMSVFG-LASRLGTD 722


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ GK LV  D + IE RV+A ++G++  ++AF N  D++  T A+ F+ P ++
Sbjct: 691 IRRAFVAAPGKTLVSIDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREE 750

Query: 424 VSKEQRAIGKVMELALGY 441
           +  ++R + K +   L Y
Sbjct: 751 IGPDERRVAKAVNYGLMY 768


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P++KV
Sbjct: 323 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKV 382

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 383 TPEMRRAAKAVNFGIIY 399


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 30/177 (16%)

Query: 270 ITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           ++ LA+D     LIL+    S      L+TL      DGR+  T      + TGR S   
Sbjct: 603 LSDLARDHEIVRLILDWREKSKIKSTYLDTLGPLRRGDGRVHTTYN-QTITATGRLSSSD 661

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P   RSE         L R              V++   A  G   +  D + I
Sbjct: 662 PNLQNIP--TRSE---------LGR-------------TVKTAFSAGEGSVFLAVDYSQI 697

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           E R+LA ++G++  ++AF  GED +  T A+ F  P+ +V+ + R+  K +   + Y
Sbjct: 698 ELRLLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVY 754


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 46/304 (15%)

Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           G Y   D +AT  L + L+P          L D E  L  +   +   G ++D++L+ +L
Sbjct: 459 GPYSCEDADATYLLHEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKEL 518

Query: 210 QELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                ++  +L+  I +   G   I S +Q   L   LF   G+ +   ++G      + 
Sbjct: 519 STGFGRQLIELEAKIHEHCGGSFNINSPKQ---LGEMLFERMGLAVGKKTKGKTGWSTNV 575

Query: 268 SNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWS 321
             + +LA++  + RL     +I KL +T ++A+        GR+  +      + TGR S
Sbjct: 576 EELERLAEEHEVARLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTSYN-QAITNTGRLS 634

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P   R EE          RG             +R   IA  G  ++ AD 
Sbjct: 635 SSDPNLQNIPV--RGEE---------GRG-------------IRRAFIAEPGSLILSADY 670

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++G+    +AFA GEDI+  T A+ F    + V+ E R   KV+   + Y
Sbjct: 671 SQIELRVLAHLSGDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIY 730

Query: 442 QGGA 445
             GA
Sbjct: 731 GQGA 734


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 166/407 (40%), Gaps = 76/407 (18%)

Query: 154 QAWQLFGEYCK-----RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           Q  Q FGE+       +D    E  R+    +  LSD E  L  +  ++   G  +D++ 
Sbjct: 441 QPEQYFGEFVAYLPIIKDAILEEINRKNLNHI--LSDIEMPLEKVLFSMERAGVPLDVEE 498

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
           +  L+ L   E   L E+I  L+ G   I+S +Q   L   L+   G+  +D ++ T   
Sbjct: 499 LAILEALFETELAVLTEEIYDLSGGPFNIKSPKQ---LSDILYNELGLRPIDKAKSTRAE 555

Query: 264 ILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRT 317
           +L      H  I +L     + +L S+      +  L + V S   R+  +    GA  T
Sbjct: 556 VLEALRSEHPIIEKLLAFRTIEKLLST-----YVKALPKQVDSHTQRIHPSFDQTGAV-T 609

Query: 318 GRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           GR +      QN+P R ER   IL +                      ++  ++      
Sbjct: 610 GRLACRDPNLQNIPIRSERG--ILLR----------------------KAFRLSEKNSYF 645

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R LA ++ +     AF +GEDI+  T ++ F+ P+++VSKEQR   K + 
Sbjct: 646 LSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN 705

Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQ----- 486
             + Y     G AKV K         +Q +       + F E+  Q  +  L +      
Sbjct: 706 FGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGR 765

Query: 487 -------DQYP-------EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                  +++P        FAV  ++ G+A EL+K A     Q + Q
Sbjct: 766 ERIIDSWNEFPGSRAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P++KV
Sbjct: 634 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKV 693

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 694 TPEMRRAAKAVNFGIIY 710


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA NG  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAENGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +KAF    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 36/260 (13%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGI 251
           + + G  +D        + +  E  ++ +++ K   G   IRS++Q   L   LF   G+
Sbjct: 624 MEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQFNIRSAQQ---LGELLFGTLGL 680

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
             V  + G  ++  S   + +L+      DLIL+           L  L + V + GR+ 
Sbjct: 681 PTVGKTRGG-QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDAAGRIH 739

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T     A+ TGR S      QN+P                 RG+     LG     +RS
Sbjct: 740 STFNQL-ATATGRLSSSNPNLQNIP----------------ARGD-----LGRR---MRS 774

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
           C  A+ G  LV AD + IE RVLA ++ +   + AF  G DI+  T    ++T  + V+ 
Sbjct: 775 CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTP 834

Query: 427 EQRAIGKVMELALGYQGGAK 446
           +QR   K +   L Y  G +
Sbjct: 835 DQRRNAKTINFGLIYGMGPQ 854


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P++KV
Sbjct: 595 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKV 654

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 655 TPEMRRAAKAVNFGIIY 671


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ +   I AF  G+DI+ +T A+ F   +D+
Sbjct: 694 IRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDE 753

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 754 VTSEQRRNAKAINFGLIY 771


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 25/167 (14%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R+LA ++G+   I AF +G+DI+  T A+ F  PID V+ EQR   K +
Sbjct: 649 LLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAV 708

Query: 436 ELALGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------- 481
              + Y     G ++  +         ++++ +       F D   A++H          
Sbjct: 709 NFGIVYGLSDYGLSRDLRIPRKEAAGYIERYFERYHGVREFLDKTVADAHANGYVTTLYG 768

Query: 482 ----------HLWMQDQYPE-FAVKDKLIGTACELVKKAWRAKHQGV 517
                       +MQ  + E  A+   + GTA +L+K A    H  +
Sbjct: 769 RRRELSAINSRNYMQRSFAERMAMNTPIQGTAADLIKIAMIRAHDAL 815


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + +L ++V+ DGR+  T      + TGR S      QN+P   RSEE             
Sbjct: 606 IESLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIPI--RSEE------------- 649

Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       VR   + S+G + L+ AD + IE R++A ++G+   I+A+ +GED++ 
Sbjct: 650 ---------GRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLIQAYKDGEDLHR 700

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +  F+ P D+V+   R+  K M   L Y
Sbjct: 701 FVGSNIFHVPTDQVTSAMRSKVKAMSYGLAY 731


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 29/172 (16%)

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
           Q    L+L+R  +    I++  TL +A + SDGR+  T +   A+ TGR S      QN+
Sbjct: 625 QFLDALLLHREKNKLKQIVQ--TLIDATNRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNI 681

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389
           P                NR     DP G     +RS  +   G + L+ +D + +E R++
Sbjct: 682 P----------------NR-----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIM 717

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y
Sbjct: 718 ADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAY 769


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA NG  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAENGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +KAF    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA NG  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAENGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +KAF    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + +  DGR+  T      + TGR S      QN+P   R+E              
Sbjct: 549 LEGLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 591

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 592 --------AGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHN 643

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+ P+D+V+ E R   K M   L Y
Sbjct: 644 YVGSKVFDVPVDEVTPELRRRVKAMSYGLVY 674


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++K
Sbjct: 372 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 431

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 432 VTNEQRRSAKAINFGLIY 449


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + +  DGR+  T      + TGR S      QN+P   R+E              
Sbjct: 594 LEGLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 636

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 637 --------AGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHN 688

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+ P+D+V+ E R   K M   L Y
Sbjct: 689 YVGSKVFDVPVDEVTPELRRRVKAMSYGLVY 719


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKK++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F+    +
Sbjct: 677 IRHAFIAREGKKVLAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFDVDFGE 736

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 737 VTTEQRRRAKAVNFGLIY 754


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351
           + L+  +  DGR+ GT      + TGR S      QN+P R E   EI            
Sbjct: 605 DGLAAFIREDGRIHGTFN-QTITATGRISSTEPNLQNIPVRMELGREI------------ 651

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        R   +   G  L+ AD + IE RVLA ++G++  I A+   EDI+  
Sbjct: 652 -------------RKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAI 698

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+ P+++V+  QR   K +   + Y
Sbjct: 699 TASEVFHVPLEEVTPLQRRNAKAVNFGIVY 728


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V  DGR+  T      + TGR S      QN+P   R+E              
Sbjct: 596 LEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 638

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  I   G ++L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 639 --------AGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLHN 690

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K M   L Y
Sbjct: 691 FVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 721


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           ++ +R   I  NG   + AD + IE R+LA ++ +   IKAF +G+DI+  T ++ F+ P
Sbjct: 599 AEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASEIFSIP 658

Query: 421 IDKVSKEQRAIGKVMELALGY 441
            + V+ E R I K +   + Y
Sbjct: 659 ENAVTDEHRRIAKTVNFGISY 679


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 31/177 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + +E R++A ++G++   +AFA G DI+  T A+ F    ++
Sbjct: 673 IRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEGLRQAFAEGADIHSATAAEVFGLAPER 732

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476
           V  EQR   K +   L Y  G   +  +A   G++       + ++ +       + D  
Sbjct: 733 VGGEQRRAAKAINFGLIY--GMSAY-GLARQLGIERGEAQAYVDRYFERYPGVKEYMDRT 789

Query: 477 QAESHH-----------LWMQD---------QYPE-FAVKDKLIGTACELVKKAWRA 512
           +AE+             L++ +         +Y E  A+   + GTA +L+K+A  A
Sbjct: 790 RAEARERGYVETLFGRRLYLPEINARNRQRREYAERTAINAPMQGTAADLIKRAMVA 846


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA++G +L+ AD + IE R++A ++G++  + AFA G+DI+  T A+      + 
Sbjct: 672 IRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQDIHRATAAEILGLAPED 731

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   K +   L Y  G   F  +A   G++
Sbjct: 732 VTGEQRRSAKAINFGLIY--GMSAFG-LARQLGIE 763


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V  DGR+  T      + TGR S      QN+P   R+E              
Sbjct: 596 LEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 638

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  I   G ++L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 639 --------AGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLHN 690

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K M   L Y
Sbjct: 691 FVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 721


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 29/153 (18%)

Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           L+ L + V  + GR+  +    G + TGR S      QNLP +QE S EI          
Sbjct: 607 LDVLPKLVHPETGRIHSSFHQTGTA-TGRLSSSDPNLQNLPSKQEESREI---------- 655

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          R  ++      K++ AD + IE RVLA ++ +   I+AF   EDI
Sbjct: 656 ---------------RKAVVPQRDSWKILSADYSQIELRVLAHLSNDQNLIEAFKKDEDI 700

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  T ++ F  P ++V+ + R+IGK++  ++ Y
Sbjct: 701 HNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIY 733


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +AS G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ 
Sbjct: 690 IRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 750 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 806

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
             A S   +++  +      PE               A+   + GTA +++KKA
Sbjct: 807 RSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 860


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     ID+
Sbjct: 437 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 496

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G   F  +A   G+
Sbjct: 497 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 527


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ ++    + L+ AD + IE R++A ++G+   I+AFA+GED++    A+AF+ P+ +V
Sbjct: 652 RAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFVAAQAFDLPVSEV 711

Query: 425 SKEQRAIGKVMELALGY 441
             E R   K M   L Y
Sbjct: 712 DPELRRRIKAMSYGLAY 728


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++K
Sbjct: 692 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTNEQRRSAKAINFGLIY 769


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 32/163 (19%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+QR   K +
Sbjct: 641 FLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAV 700

Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471
              L Y     G +K+ K   S   GL                  ++Q S+N K T+   
Sbjct: 701 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 760

Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 DWE +       +      AV  ++ G+A EL+K A 
Sbjct: 761 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 799


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L +L ++V+ DGR+  T      + TGR S      QN+P   RSEE             
Sbjct: 667 LESLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIPI--RSEE------------- 710

Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       VR   + S G + L+ AD + IE R++A ++G+   I+A+ +GED++ 
Sbjct: 711 ---------GRRVRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHR 761

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +  F+ P D+V+   R+  K M   L Y
Sbjct: 762 FVGSNIFHVPTDQVTSAMRSKVKAMSYGLAY 792


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V++EQR   K +   L Y
Sbjct: 749 VTREQRRSAKAINFGLIY 766


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEN 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 736 VTVDQRRKAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 770


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 98/239 (41%), Gaps = 51/239 (21%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +S +GR+  T    G + TGR S      QN+P         T+T +             
Sbjct: 584 LSINGRIHTTYNQTGTA-TGRLSSSNPNLQNIP---------TRTYEGTK---------- 623

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   IAS G KLV  D + IE RVLA I+ ++  I A+ +  D++  T  K F 
Sbjct: 624 -----IREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIFM 678

Query: 419 TPID-KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
              D KVSK QR I KV+  ++ Y     G +K  K   S   L +  + +         
Sbjct: 679 LKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAKLYINTYFKEYPKVRILL 738

Query: 474 D--WEQAE-------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           D   E+A+                   S ++ +++Q    AV   + GTA  ++KK  +
Sbjct: 739 DDIIEKAKKDGYVETKFGTRRYVYDINSSNINIKEQAKRMAVNTVIQGTAANIIKKVMK 797


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +   +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 691 IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 751 VTNEQRRSAKAINFGLIY 768


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++K
Sbjct: 692 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTNEQRRSAKAINFGLIY 769


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++K
Sbjct: 692 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTNEQRRSAKAINFGLIY 769


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 27/141 (19%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360
           DGR+  T      + TGR S      QN+P R E   +I                     
Sbjct: 597 DGRIHSTFN-QTITATGRISSTEPNLQNIPIRMELGRKI--------------------- 634

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               R   +  +G   + AD + IE R+LA ++G+D  I+A+    DI+  T +K F TP
Sbjct: 635 ----RKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTP 690

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           +D+V+  QR+  K +   + Y
Sbjct: 691 LDEVTPRQRSNAKAVNFGIVY 711


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A +D  + AF +  D++  T A+ F  P++ 
Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR   K +   L Y  G   F  +A   G++
Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C +A  G+ +   D    E RVLA ++G+   I+AFA G+D+++ T   AF   I K
Sbjct: 374 IRRCFLADEGELIASVDYQAQELRVLAALSGDPTMIRAFAEGQDLHLLTARAAFGDHITK 433

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
              E R   KV+     Y GGA   KT++   GL      Q V
Sbjct: 434 DDPE-RKYAKVVNFGRVYGGGA---KTVSEQTGLGFMAAKQVV 472


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L ++V+ DGR+  TL     + TGR S      QN+P   R+EE           G  I 
Sbjct: 597 LIKSVADDGRIHTTL-LQTIAATGRLSSTEPNLQNIPV--RTEE-----------GRRIR 642

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           D          + ++     +L+ AD + IE R++A ++ ++  I+AF +GED++    +
Sbjct: 643 D----------AFVVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVAS 692

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           +AF+ P ++++ E R   K M   L Y
Sbjct: 693 RAFSMPPEEITPELRYRVKAMSYGLAY 719


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           G Y   D + T +L  ++ P L   E  L +              +   G +ID  ++  
Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHA 556

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + IAQ   +L++   ++       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614

Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322
            + +LA D  L ++      + KL +T ++ +        GR+  T      + TGR S 
Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P   R+EE                         +R   IA     +V AD +
Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R++A ++ +   + AF+ G+DI+  T A+ F  P+D VS EQR   K +   L Y
Sbjct: 710 QIELRIMAHLSRDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 36/260 (13%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGI 251
           + + G  +D        + +  E  ++ +++ K   G   IRS++Q   L   LF   G+
Sbjct: 624 MEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQFNIRSAQQ---LGELLFGTLGL 680

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
             V  + G  ++  S   + +L+      DLIL+           L  L + V   GR+ 
Sbjct: 681 PTVGKTRGG-QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDDAGRIH 739

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T     A+ TGR S      QN+P                 RG+     LG     +RS
Sbjct: 740 STFNQL-ATATGRLSSSNPNLQNIP----------------ARGD-----LGRR---MRS 774

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
           C  A+ G  LV AD + IE RVLA ++ +   + AF  G DI+  T    ++T  + V+ 
Sbjct: 775 CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTP 834

Query: 427 EQRAIGKVMELALGYQGGAK 446
           +QR   K +   L Y  G +
Sbjct: 835 DQRRNAKTINFGLIYGMGPQ 854


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A +D  + AF +  D++  T A+ F  P++ 
Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR   K +   L Y  G   F  +A   G++
Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L+  +++DGR+  T +    + TGR S      QN+P           T   L R   
Sbjct: 600 DGLAACIAADGRIHTTFK-QTITATGRISSTEPNLQNIP-----------TRIELGR--- 644

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R C +  +G   V AD + IE RVLA ++G++  I+A+ + EDI+  T
Sbjct: 645 ----------QIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAIT 694

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            ++ F+ P+ +V+   R   K +   + Y
Sbjct: 695 ASQVFHVPLSEVTPLMRRNAKAVNFGIVY 723


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A +D  + AF +  D++  T A+ F  P++ 
Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR   K +   L Y  G   F  +A   G++
Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V  DGR+  T     AS TGR S      QN+P   R+E              
Sbjct: 577 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 619

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  I   G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 620 --------AGRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHN 671

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+ P+D+V+ E R   K M   L Y
Sbjct: 672 YVGSKVFDVPVDEVTPELRRRVKAMSYGLVY 702


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     ID+
Sbjct: 691 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 750

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 751 VSSEQRRRAKAVNFGLIY 768


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A +D  + AF +  D++  T A+ F  P++ 
Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR   K +   L Y  G   F  +A   G++
Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     ID+
Sbjct: 690 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 749

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 750 VSSEQRRRAKAVNFGLIY 767


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     ID+
Sbjct: 691 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 750

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 751 VSSEQRRRAKAVNFGLIY 768


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           LS  + +DGR+  T      + TGR S      QN+P R E            L R    
Sbjct: 528 LSAVIEADGRIHSTFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 570

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +  +G   + AD + IE RVLA ++G++  I+A+   EDI+  T 
Sbjct: 571 ---------LIRKVFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTA 621

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+ P D+V+  QR   K +   + Y
Sbjct: 622 SQVFHVPFDEVTDLQRRNAKAVNFGIVY 649


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           C+R   I   G  ++ AD + IE R++  ++ +   ++AF N +D++  T +  FN PID
Sbjct: 669 CIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTMFNIPID 728

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E R   K +   L Y
Sbjct: 729 EVTSEYRRRAKAINFGLIY 747


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + ++ D GR+  +    GA+ TGR +      QN+P   R+EE             
Sbjct: 320 DALQDHINPDSGRVHTSYSIAGAN-TGRLASTDPNLQNIP--VRTEE------------- 363

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IA  D   +AF  G DI+  
Sbjct: 364 ---------GRRIRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQGLDIHAA 414

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P+D+++ E R   K +   + Y
Sbjct: 415 TASEMFNVPLDQMTPEIRRQAKAINFGVIY 444


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G+ +V AD + IE R++A ++G+     AF N ED++  T A+ F  P + 
Sbjct: 744 VRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAFQNNEDVHRRTAAEVFGVPPEH 803

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++ EQR   K +   L Y  G   F  +A   G+D
Sbjct: 804 ITAEQRRYAKTINFGLIY--GMSSFG-LAKALGID 835


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNGKKLVVADLAG 383
           PR         QT+ A  R  + +DP        G     +R C I  +G     AD + 
Sbjct: 642 PRTGHIHTSFNQTVTATGRLSS-SDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQ 700

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RV+A ++G+   I+AF +G DI+  T AK +   +  V++++R   K     + Y  
Sbjct: 701 IELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIY-- 758

Query: 444 GAKVFKTMASHCGLDLQQFSQ 464
           G  VF  +A   G+D  +  Q
Sbjct: 759 GITVF-GLAERLGIDRNEAKQ 778


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 113/294 (38%), Gaps = 61/294 (20%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L   V   GRL  T     A+ TGR S      QN+P +                  
Sbjct: 558 LEPLPRKVDVGGRLHTTFNQL-ATATGRLSSSNPNLQNIPIK------------------ 598

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                 G     +R+C   S GK LV AD + IE R+LA ++ +   ++AF   EDI+  
Sbjct: 599 ------GEFGPRMRACFKPSKGKLLVAADYSQIELRILAHMSMDPNLLQAFGGNEDIHRR 652

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGL 457
           T    F+  I +VS+++R   K +   L Y  G              AK F ++      
Sbjct: 653 TAGLLFDKDIQEVSQDERRKAKTINFGLLYGMGPQKLSRELSISMEEAKEFISVYFSKLD 712

Query: 458 DLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            ++ F Q ++  +  + +               S +  M  Q    AV   + G+A +++
Sbjct: 713 RVRDFYQQIEEKAQEQGYVTTMAGRRRLLPDINSRNTNMAQQARRTAVNTVIQGSAADVI 772

Query: 507 KKAWRAKHQG----------VLQLWKD-LTEGFACVVQEGGSISARRVANVPRL 549
           KKA  A              VLQ+  + L E  A V Q+ G   AR +A V  L
Sbjct: 773 KKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARVMAGVESL 826


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 210/494 (42%), Gaps = 94/494 (19%)

Query: 6   IDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           +D+ET S  P    L  + +    +++      +A DDE +   D   ++  P      L
Sbjct: 336 LDVETTSTDPMTARLVGIALATSGQRSFYVPVNHANDDEQLD-ADEVREALSP-----LL 389

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D   +  AH+  ++ ++ ++      P  R    +++A      ++L    LA  F+  
Sbjct: 390 ADPNTVVYAHHGKYDALVLERA---GYPRPRIAFDTMIAAYLLGENALDLKSLA--FNRL 444

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +M E   LI R      +    D T    VQA    G+Y   DVEAT  L + L P  
Sbjct: 445 GMEMTEITTLIGR----GRNQLTMDLT---DVQAA---GDYACADVEATYRLVEVLQPDL 494

Query: 182 DGER--------DLWLLDQTINDR--GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--D 229
           + ++        ++ L+D  I+    G  +D+DL+  L   +  +  +L+ +I  L   +
Sbjct: 495 EAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELEREIYGLAKHE 554

Query: 230 GIIRSSRQTYALRMYLFLITGIDL-------VDMSEGTLKSIL-SHSNITQLAKDLILNR 281
             I S+RQ   L   LF   G+           +S+  L+++  +H  +  + +   L +
Sbjct: 555 FNINSTRQ---LATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCILEYRQLLK 611

Query: 282 LASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           L S+      ++ L E V+ + GR+  +     A+ TGR S      QN+P   R+E   
Sbjct: 612 LKST-----YVDALPEQVNPETGRIHTSFNQTIAA-TGRLSSTDPNLQNIP--VRTE--- 660

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASN--GKK-------LVVADLAGIEARVLAW 391
                 L R              VR   IA N  G +       L+ AD + IE R++A 
Sbjct: 661 ------LGR-------------SVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAH 701

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++G++  + AF  G+DI+  T A  F  P+++V+ + R + K +   + Y  G + +  +
Sbjct: 702 LSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMY--GMQAYG-L 758

Query: 452 ASHCGL---DLQQF 462
           A   G+   D Q+F
Sbjct: 759 ARDTGMSRQDAQRF 772


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA++G K+V AD + IE R++A ++ +   + AFANG D++  T A+ F   +++
Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVELEE 730

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K +   L Y
Sbjct: 731 VTSDMRRKAKAVNFGLIY 748


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + +E R++A ++G+   + AFA+G+DI+  T A+ F  PI++
Sbjct: 710 IRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLSAFASGQDIHAATAARIFKVPIEE 769

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K     + Y
Sbjct: 770 VTSDMRRKAKTANFGIIY 787


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           L++L E V+   GR+  +    G   TGR S      QNLP R E  +EI          
Sbjct: 611 LDSLPELVNKVTGRIHTSYHQTGTG-TGRLSSSNPNMQNLPIRDEEGKEI---------- 659

Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          R C+I    G K+V AD + IE R+LA ++ +   + AF N +D+
Sbjct: 660 ---------------RKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFKNDKDV 704

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  T +  +     +VS+EQR IGK++  ++ Y
Sbjct: 705 HSLTASNLYGIKESEVSEEQRRIGKMINFSIIY 737


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 117/298 (39%), Gaps = 42/298 (14%)

Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           G Y   D + T +L  ++ P L   E  L + +            I   G +ID  ++ K
Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHK 556

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             E +A    +L++   ++       S  T  L+  LF   GI  +  + G   S  S  
Sbjct: 557 HSEELALRLSELEQKAHEIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614

Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA D  L ++      + KL +     L   ++       T      + TGR S  
Sbjct: 615 VLEELALDYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSST 674

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   R+EE                         +R   IA     +V AD + 
Sbjct: 675 EPNLQNIPV--RNEE----------------------GRRIRQAFIAPKDYLIVSADYSQ 710

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE R++A ++ +   + AFA G+DI+  T A+ F  P+D V+ +QR   K +   L Y
Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIY 768


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+     I++
Sbjct: 691 IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQ 750

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAFG-LAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 807

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
               + H +++  +      PE               A+   + GTA +++KKA
Sbjct: 808 RSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKA 861


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 5/95 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422
           +R   IAS G K++ AD + IE R++A ++ +   +KAF +G+D++  T ++ F+ TP++
Sbjct: 675 IREAFIASPGNKIISADYSQIELRIMAHLSDDASLLKAFHDGQDVHRATASEIFDITPLE 734

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            V+ +QR   KV+   L Y  G   F  +AS+ G+
Sbjct: 735 -VTSDQRRYAKVINFGLIY--GMSAF-GVASNLGI 765


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  S    +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++KV
Sbjct: 634 RAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 694 TPEMRRAAKAVNFGIIY 710


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 24/148 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L + V+ DGR+  T Q   A+ TGR S      QN+P R E    I         R   I
Sbjct: 603 LLKTVAEDGRIHTTYQQTVAA-TGRLSSLDPNLQNIPVRTESGRRI---------REIFI 652

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
           ADP               +  +L+ AD + IE R++A ++G+   I+AF +GED++    
Sbjct: 653 ADP-------------HVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVG 699

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +K F   ID+V    R+  K M   L Y
Sbjct: 700 SKVFGVGIDEVDSAMRSKVKAMSYGLVY 727


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+     I++
Sbjct: 691 IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQ 750

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAFG-LAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 807

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
               + H +++  +      PE               A+   + GTA +++KKA
Sbjct: 808 RSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKA 861


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA++G K+V AD + IE R++A ++ +   + AFANG D++  T A+ F   +++
Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVSLEE 730

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K +   L Y
Sbjct: 731 VTSDMRRKAKAVNFGLIY 748


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K+V AD + IE R++A ++ +   + AFA G+DI+  T A+ F   +  
Sbjct: 697 IRQAFIAREGYKIVAADYSQIELRIMAHLSQDKGLLDAFAEGQDIHRATAAEVFGVLLTD 756

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 757 VTNEQRRSAKAINFGLIY 774


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+  D + IE R+LA +AG D   +AFA+G DI+  T ++ F+ P+++
Sbjct: 695 IREAFVAEEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEE 754

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 755 MTPEIRRKAKAINFGVIY 772


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  S    +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++KV
Sbjct: 634 RAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 694 TPEMRRAAKAVNFGIIY 710


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382
           PR  R     TQT+ A  R  ++ DP              +RS  +   G   L+ AD +
Sbjct: 680 PRDGRIHTTFTQTVAATGRLSSV-DPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADYS 738

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +E R++A ++G++  IKAF +G D +    +  +  P+D+V+ +QR   K M   L Y
Sbjct: 739 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAY 797


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKK++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F     +
Sbjct: 705 IRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVDFSE 764

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 765 VTTEQRRRAKAVNFGLIY 782


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA     +V AD + IE R++A ++G+   I+AF NGED++  T A+ F    + 
Sbjct: 689 VRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAFKNGEDVHRRTAAEVFGMQPEN 748

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ EQR   K +   L Y
Sbjct: 749 ITPEQRRYAKTINFGLIY 766


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G ++V AD + IE R++A ++ +   + AF    D++  T A+ F  P+D 
Sbjct: 668 IRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPGLLAAFRENLDVHSATAAEVFGVPLDS 727

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 728 VSGEQRRKAKAINFGLIY 745


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + ++  + AF +G+D++  T A+  N P+++
Sbjct: 683 IRKAFIAPEGRILLAADYSQIELRLMAHFSQDEALLDAFQHGQDVHRRTAAEVLNIPLEE 742

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 743 VTNDQRRQAKAVNFGLLY 760


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382
           PR  R     TQT+ A  R  ++ DP              +RS  +   G   L+ AD +
Sbjct: 17  PRDGRIHTTFTQTVAATGRLSSV-DPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADYS 75

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +E R++A ++G++  IKAF +G D +    +  +  P+D+V+ +QR   K M   L Y
Sbjct: 76  QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAY 134


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A+ G KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D 
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 821 MPSEIRRRAKAINFGIIY 838


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    GAS TGR +      QN+P   RSEE                        
Sbjct: 657 GRVHTSYVQTGAS-TGRLASTDPNLQNIPV--RSEE----------------------GR 691

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +A  GK+LV  D + IE R+LA +AG D   +AF +G DI+  T ++ F  P+D
Sbjct: 692 RIREAFVADAGKRLVSLDYSQIELRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLD 751

Query: 423 KVSKEQRAIGKVMELALGY 441
           +++ + R   K +   + Y
Sbjct: 752 EMTSDVRRRAKAINFGVIY 770


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A+ G KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D 
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 821 MPSEIRRRAKAINFGIIY 838


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G  +V AD + IE R++A ++G++  + AFA+GED++  T  + F     +
Sbjct: 667 IRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIFGVTPLE 726

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V  +QR + K +   L Y  G   F  +A   GL+
Sbjct: 727 VGPDQRRVAKSINFGLIY--GMSAFG-LARQLGLE 758


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE R+LA I   +   KAF++G+DI+  T ++ F  P+  
Sbjct: 716 IRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMAD 775

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           ++ E R   K +   + Y  G   F  +A+  G+D  + S+ +K+
Sbjct: 776 MTSEIRRRAKAINFGIIY--GISGFG-LANQLGIDQGEASRYIKT 817


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + V+++ GR+       GA+ TGR +      QN+P   RSEE             
Sbjct: 645 DALQDHVNANTGRVHTCYSIAGAA-TGRLASTDPNLQNIPI--RSEE------------- 688

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IA  D   +AF  G+DI+  
Sbjct: 689 ---------GRRIREAFVAPEGKVLVALDYSQIELRILAHIAQIDALKEAFERGDDIHAM 739

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+ P+D+++ E R   K +   + Y
Sbjct: 740 TASEMFDVPMDQMTPEIRRNAKAINFGVIY 769


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   +  
Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALQD 735

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 736 VTTDQRRKAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 770


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+     ID+
Sbjct: 647 IRQAFIAPSGWKIMAVDYSQIELRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQ 706

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 707 VTSEQRRRAKAVNFGLIY 724


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+  D + IE R++A ++ +   ++AFA G+DI+  T A+ F    D 
Sbjct: 682 IRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDKGLLEAFAAGKDIHKATAAEVFGVDFDS 741

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           V+ EQR   K +   L Y     G AK      +     + ++         + D  +A+
Sbjct: 742 VTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIGRAEAQEYIDRYFHRYPGVLEYMDRTRAQ 801

Query: 480 SH-------------HL-------WMQDQYPE-FAVKDKLIGTACELVKKAW 510
           +H             HL        M+ Q  E  A+   + GTA +++KKA 
Sbjct: 802 AHDKEYVETLMGRRLHLPEINARNKMRQQAAERTAINAPMQGTAADIIKKAM 853


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A  G  +V AD + IE R++A ++G+   + AF NGED++  T A+ F    + 
Sbjct: 691 VRRAFTAPAGSLIVSADYSQIELRIMAHLSGDKTLMAAFQNGEDVHRRTAAEVFGIAPEN 750

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           VS EQR   K +   L Y  G
Sbjct: 751 VSPEQRRYAKTINFGLIYGMG 771


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I +N K  +  D + IE RVLA ++ E   IKAF    DI++      FN   D+
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHLQAAKLIFNLSDDQ 720

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ EQR I KV    + Y  G   F  +A+   +++ Q  Q +K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 28/166 (16%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GRL  +    GA+ TGR S      QN+P                     I   LG    
Sbjct: 590 GRLHTSFNQTGAA-TGRLSSSNPNLQNIP---------------------IRTSLGRE-- 625

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R+  +  +G KL+VAD + IE R+LA ++G++  ++AF  GEDI+  T A+    P  
Sbjct: 626 -IRAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPL 684

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            V+ E R   K +   + Y  G   F  +A+  G+   +  + +K+
Sbjct: 685 MVTPEARRDAKAVNFGIVY--GISAF-GLAAQLGIGRAEAERYIKN 727


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 40/216 (18%)

Query: 250 GIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           G++L +  +G +    K++   S++ ++   L + R+     A+ KL  L   +  +GR+
Sbjct: 256 GLELPETQKGNISTDDKTLAEFSHVKEVRDILEIRRIKK---ALDKLKELKGFIR-NGRV 311

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
               +  GA  TGR S      QN+PR                               +R
Sbjct: 312 YPEFRQIGAV-TGRMSSSNPNVQNIPRD------------------------------MR 340

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           S   AS G   V+AD + IE R+ A    ++  ++AF  G D++  T +     P ++++
Sbjct: 341 SLFRASEGNLFVIADFSQIELRIAAEYVQDENMLRAFREGRDLHRYTASLVLEKPEEEIT 400

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQ 460
           KE+R + K M   L Y   A+     A S  G++L+
Sbjct: 401 KEERQLAKAMNFGLIYGISARGLSEYARSSYGVELE 436


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A+ G KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D 
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 821 MPSEIRRRAKAINFGIIY 838


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN P DK
Sbjct: 638 IRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIHTQTACQIFNLPKDK 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 698 LTSKHRRKAKAINFGIIY 715


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I +N   +++ AD + IE RVLA I G+   I+AF N EDI+ TT +K F  P +
Sbjct: 656 IRKVFIPTNSDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPE 715

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
           +VS   R+  K +   + Y  G
Sbjct: 716 EVSSLMRSRAKAVNFGIVYGIG 737


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  +  AD + IE R++A ++ ++  ++AF  G D++  T A+ F   +D+
Sbjct: 705 VREAFVAPAGSVIASADYSQIELRIMAHLSEDEALLRAFTEGLDVHRATAAEVFGVAVDQ 764

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 765 VSSEQRRYAKVINFGLIY 782


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 727 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPLES 786

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 787 VSNEQRRSAKAINFGLIY 804


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F+    +
Sbjct: 690 IRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSE 749

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 750 VTSEQRRRAKAVNFGLIY 767


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 28/151 (18%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           L T+ + V  DGR+  T      + TGR S      QN+P R ER +EI           
Sbjct: 666 LPTMKDPV--DGRVH-TSYMQTVTATGRLSSNNPNLQNIPIRSERGKEIR---------- 712

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R+ I  S   +L+ AD + IE R++A +A +   I+AF +  DI+ 
Sbjct: 713 --------------RAFIARSKDFQLMSADYSQIELRIIAALADDTNMIQAFKDKVDIHR 758

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T AK F+  +D V+K+QR+  K +   + Y
Sbjct: 759 ATAAKVFHVELDDVTKDQRSAAKAVNFGIIY 789


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 270 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 329

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 330 VTGEQRRSAKAINFGLIY 347


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 688 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPLES 747

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 748 VSNEQRRSAKAINFGLIY 765


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+  D + I+ RVLA ++ +   I+AF + +DI+  T A+  N P  K
Sbjct: 664 IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSK 723

Query: 424 VSKEQRAIGKVMELALGY 441
           V+KEQR + K +   + Y
Sbjct: 724 VTKEQRRLAKTVNFGVIY 741


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNTPID 422
           +R+  +A  G  L+  D + IE RVLA ++ +   +KA+ + +D++  T  K  F T  D
Sbjct: 130 IRTGFVAKEGHSLISFDYSQIELRVLAELSKDRHLVKAYQDNQDLHDLTARKIFFKTEED 189

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           ++S+ +R+I KV+  ++ Y  G   F  ++   G+ +Q+ SQ +  T+ FE++
Sbjct: 190 EISRHERSIAKVINFSILY--GKTPF-GLSKELGITVQEASQYI--TTYFEEY 237


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ +   ++AFAN EDI+  T A+ F      
Sbjct: 703 IREAFIAPPGSHIVSADYSQIELRIMAHLSKDAGMLQAFANNEDIHRATAAEIFGVERSA 762

Query: 424 VSKEQRAIGKVMELALGY 441
           V  EQR   KV+   L Y
Sbjct: 763 VDNEQRRYAKVINFGLIY 780


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 43/193 (22%)

Query: 253 LVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
           LV + E T    L  +L H ++T+L                + +  L ++V  DGR+  T
Sbjct: 586 LVSLHEQTGHPFLTHLLRHRDVTRLK---------------VTVEGLRKSVGDDGRIHTT 630

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            Q   A+ TGR S      QN+P   R++E           G  I           R+ +
Sbjct: 631 FQQTVAA-TGRLSSTEPNLQNIPI--RTDE-----------GRLIR----------RAFV 666

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
                  L+ AD + IE R++A ++ ++  I+AF +GED++     KAF  P ++V+ E 
Sbjct: 667 PGPQADLLLTADYSQIEMRIMATLSEDEGLIEAFRSGEDLHTFVAMKAFGLPAEQVTPEL 726

Query: 429 RAIGKVMELALGY 441
           R   K M   L Y
Sbjct: 727 RRRIKAMSYGLAY 739


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L  A+  DGR+R T    GA+ TGR S      QN+P   R+E              
Sbjct: 591 IDGLINAIDGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPV--RTE-------------- 633

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS      G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 634 --------AGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHN 685

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+D+V+ E R   K +   L Y
Sbjct: 686 YVGSRVFDVPVDEVTPELRRRVKALSYGLVY 716


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 694 IRQAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLEN 753

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 754 VTTEQRRSAKAINFGLIY 771


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%)

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
           C+ A  G   V AD + IE RVLA ++GE    + F  G DI+  T A     P D V+K
Sbjct: 615 CLTAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTK 674

Query: 427 EQRAIGKVMELALGY 441
           EQR + K +   L Y
Sbjct: 675 EQRRMAKTVTFGLLY 689


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I++
Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDIEQ 747

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 748 VSSEQRRRAKAVNFGLIY 765


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA+ G  L+ AD + IE RVLA + G+   I+ F  G DI+  T A+ F      
Sbjct: 719 VRRGFIAAPGHLLIAADYSQIELRVLAHMTGDPNLIQTFIEGRDIHAATAARLFGVGFSA 778

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V K QR I K +   + Y  G   F  +A   G+  +Q
Sbjct: 779 VDKNQRRIAKTVVFGVIY--GISPFG-LAQRLGISREQ 813


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +RS  +   G    ++ D + +E RVLA ++G++  I+AF N EDI+  T ++ F  P 
Sbjct: 616 VIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPF 675

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V+ EQR+  K +   + Y
Sbjct: 676 EEVTSEQRSHAKAVNFGIIY 695


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I   G K+V  D + IE R++A ++ ++  +KAFA G DI+  T A+ F    D+
Sbjct: 680 VRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLKAFAEGLDIHRATAAEVFGCKADE 739

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 740 VSNDQRRQAKAVNFGLIY 757


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +++++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 623 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP-------VRTDEGRAIRRG---- 670

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 671 ------------FVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVAS 718

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F    D V  E R   K M   L Y
Sbjct: 719 QVFGVERDAVDAEMRRKIKAMSYGLAY 745


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +RS  +   G    ++ D + +E RVLA ++G++  I+AF N EDI+  T ++ F  P 
Sbjct: 616 VIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPF 675

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V+ EQR+  K +   + Y
Sbjct: 676 EEVTSEQRSHAKAVNFGIIY 695


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKK++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F+    +
Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGLLTAFAEGKDIHKATAAEVFDVDFSE 737

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 738 VTSDQRRRAKAVNFGLIY 755


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 29/164 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L + +  D R+  T     A+ TGR S      QN+P R E    I         RG  +
Sbjct: 614 LIKTIGDDRRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTEDGRRI---------RGSFV 663

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              +G   DC            L+ AD + IE RV+A ++G+   I+AF  GED++    
Sbjct: 664 ---VGEGYDC------------LLTADYSQIEMRVMAHLSGDAGLIEAFRTGEDLHSFVG 708

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           ++AF  PID+V+ E R   K M   L Y  G   F  +A+  G+
Sbjct: 709 SRAFGVPIDQVTPELRRRVKAMSYGLAY--GLSAFG-LAAQLGI 749


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 106/275 (38%), Gaps = 63/275 (22%)

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA D    RL      + KLN+     L+  +  D R+ GT      + TGR S   
Sbjct: 537 LEKLASDWPAVRLILDYRQLTKLNSTYADGLAAYIGPDERIHGTFN-QTITATGRISSTE 595

Query: 325 FQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
              QN+P R E   EI                         R   +   G   + AD + 
Sbjct: 596 PNLQNIPVRMELGREI-------------------------RKVFVPQEGCVFIDADYSQ 630

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL---- 439
           IE RVLA ++G+   I A+   EDI+  T ++ F+ P+ +V+  QR   K +   +    
Sbjct: 631 IELRVLAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNFGIVYGI 690

Query: 440 ---GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
              G   G  + +  AS     ++++ +      TF D   AE+  L             
Sbjct: 691 SSFGLSEGLSITRKEASEY---IEKYFETYPGVKTFLDGLVAEAKELGYAASMFGRRRPV 747

Query: 484 -------WMQDQYPE-FAVKDKLIGTACELVKKAW 510
                  +MQ  + E  A+   + GTA +++K A 
Sbjct: 748 PELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 782


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+C + + G +L+VAD A IE RV A +A  D     F  G D +  T A     P  +
Sbjct: 351 LRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFRAGRDPHRATAATLTGKPEPE 410

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKT-MASHCGLDLQQFSQNVKSTSTF 472
           V   +R + K +     +  GA+ F++  AS  GLDL +  Q  ++   F
Sbjct: 411 VESHERKLAKAVNFGFLFGMGARRFRSYAASGYGLDLDE-RQAAEAREAF 459


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 26/154 (16%)

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           I +    S +  SDGR+  T +   A+ TGR S      QN+P                N
Sbjct: 1   INRTQPTSRSHRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP----------------N 43

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           R     DP G     +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G D
Sbjct: 44  R-----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRD 95

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +    +  +  P+D+++ +QR+  K M   L Y
Sbjct: 96  FHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAY 129


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKK++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F+    +
Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 737

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 738 VTTDQRRRAKAVNFGLIY 755


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GK LV  D + IE R+LA +AG D   +AF +G+DI+  T ++ FN P+++
Sbjct: 693 IREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAATASEMFNVPLEE 752

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 753 MTPDVRRQAKAINFGVIY 770


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R C +    G   V AD + IE R+LA ++G++  + AF +G D +  T A+ F+ P+D
Sbjct: 638 IRECFVPLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVD 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ + R+  K +   + Y
Sbjct: 698 EVTPQLRSRAKAVNFGIVY 716


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ 
Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 747

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 748 VSSEQRRRAKAVNFGLIY 765


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 125/301 (41%), Gaps = 42/301 (13%)

Query: 198  GYRIDLDLVLKLQELIAQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G ++D D +  LQ+ + QE +++  D+  +L    I  + Q   L      +  + ++D 
Sbjct: 1413 GIKVDEDKLRILQDELKQEHQEISNDLYSQLNHSEINLNSQKQVLEK----LQELKIMDR 1468

Query: 257  SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQF 311
            S+  + S  S S + +   + I++ L     A   L   ++ + +       R+      
Sbjct: 1469 SKKKIISDTSESTLIRNMSNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQ 1528

Query: 312  YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             GA  +GR+S      Q +PR ++                             R C +A 
Sbjct: 1529 LGA-ESGRFSCDGPNLQQVPRDKK----------------------------FRECFVAP 1559

Query: 372  NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
             G K V+AD + IE R+ A IA +   I+A+    D++  T +   N  I++V+KE+R +
Sbjct: 1560 KGSKFVIADFSQIELRIAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEERQL 1619

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS--TSTFEDWEQAESHHLWMQDQY 489
             K +   L +       + M +  G +L+      K   TS F +++   + H  +++  
Sbjct: 1620 AKAVNFGLIFGMSINGLR-MYAETGYNLKLTQTEAKEIYTSFFNNFKGILNWHNSVKNSR 1678

Query: 490  P 490
            P
Sbjct: 1679 P 1679


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 25/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+TL     +DGR+  T      + TGR S      QN+P   RSE              
Sbjct: 648 LDTLGALRETDGRVHTTYN-QTITATGRLSSSNPNLQNIPT--RSE-------------- 690

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                LG A   V+       G   V  D + IE R+LA ++G++  + AF  GED +  
Sbjct: 691 -----LGHA---VKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAE 742

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T A+ F  P+++V+ + R+  K +   + Y
Sbjct: 743 TAARVFGVPVEEVTPQLRSRAKAVNFGIVY 772


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++VS DGR+  T     A+ TGR S      QN+P   R+EE           G 
Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 656

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           R+ ++ +  + L+ AD + IE R++A ++ ++  I AF +G D +  
Sbjct: 657 RIR----------RAFVVGTGYECLLTADYSQIEMRIMAHLSADEALIDAFNSGLDFHAA 706

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T +  F  P++ V+ +QR   K M   L Y
Sbjct: 707 TASSVFQVPVEAVTADQRRKIKAMNYGLAY 736


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R++A ++ ++  + AF N  D++  T A+ F   +  
Sbjct: 690 IRQAFIAPPGYKLLAADYSQIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKD 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  GA   + +    G+D +Q
Sbjct: 750 VTSDQRRSAKAINFGLIYGMGA---QKLGKDIGVDTKQ 784


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++KV
Sbjct: 634 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 694 TPEMRRAAKAVNFGIIY 710


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A+ G KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D 
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 821 MPGEIRRRAKAINFGIIY 838


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F    ++
Sbjct: 681 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGAHFEE 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 741 VTTEQRRRAKAVNFGLIY 758


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I +N K  +  D + IE RVLA ++ E   I AF    DI++      FN   D+
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ EQR I KV    + Y  G   F  +AS   +++ Q  Q +K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNMNVNQAKQMIK 761


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F    ++
Sbjct: 678 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLTAFAEGKDIHKATAAEVFGVHFEE 737

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 738 VTTEQRRRAKAVNFGLIY 755


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PID 422
           +R+  IA  G  LV AD + IE R++A ++ +   ++AFA GED++  T A+ F   P+D
Sbjct: 683 IRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEAFAQGEDVHRATAAEIFGVRPVD 742

Query: 423 KVSKEQRAIGKVMELALGY 441
            V  +QR + KV+   L Y
Sbjct: 743 -VGPDQRRVAKVINFGLIY 760


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G +   AD + IE R++A ++G+   I+AF   +DI+  T AK +   ++ 
Sbjct: 684 IRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRANQDIHAATAAKIYKEKLED 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V++EQR+  K     + Y  G  VF  +A   G+D ++  + +     FE++   + +
Sbjct: 744 VTREQRSKAKTANFGIIY--GISVF-GLAERLGIDRKEAKELID--GYFENYPHVKEY 796


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L  +V  DGR+  T +   AS TGR S      QN+P +                  
Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTD---------------- 643

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+ +GED++ 
Sbjct: 644 --------AGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHN 695

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+  ID+V+ E R   K M   L Y
Sbjct: 696 YVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L +A  +DGR+  T Q   AS TGR S      QN+P R +    I         RG  I
Sbjct: 664 LQKAAVTDGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRI---------RGAFI 713

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             P  L  D V         + L+ AD + IE R++  +A ++  I+A+A+GED++    
Sbjct: 714 VAPKVL--DGVEY-------EGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVG 764

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F    ++V+ + RA  K M   L Y
Sbjct: 765 SEVFGVAPEEVTPQMRAKVKAMSYGLAY 792


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +++++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 612 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP-------VRTDEGRAIRRG---- 659

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 660 ------------FVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVAS 707

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F    D V  E R   K M   L Y
Sbjct: 708 QVFGVERDAVDAEMRRKIKAMSYGLAY 734


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +   +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 691 IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGQDIHRATAAEVFGLPLES 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 751 VTNEQRRSAKAINFGLIY 768


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 27/144 (18%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357
           V  DGR+ GT     A+ TGR S      QN+P R E   +I                  
Sbjct: 715 VEGDGRIHGTFNQTIAA-TGRLSSTEPNLQNIPIRMELGRKI------------------ 755

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  R   I  +G   + AD + IE R+LA ++ +   I+A+   +DI+  T ++ F
Sbjct: 756 -------RKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVF 808

Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441
           +TP D+V+  QR+  K +   + Y
Sbjct: 809 HTPFDEVTSAQRSNAKAVNFGIVY 832


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L  +V  DGR+  T +   AS TGR S      QN+P +                  
Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTD---------------- 643

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+ +GED++ 
Sbjct: 644 --------AGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHN 695

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+  ID+V+ E R   K M   L Y
Sbjct: 696 YVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I  +G     AD + IE RV+A ++G+   I+AF  G DI+  T AK +   +  
Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIEAFQEGYDIHAATAAKMYGKEMKD 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V++++R   K     + Y  G  VF  +A   G+D  +  Q +     F  + Q +S+  
Sbjct: 741 VTRDERTKAKRANFGIIY--GITVF-GLAERLGIDRGEAKQLID--GYFTTFPQVQSYME 795

Query: 484 WMQD 487
             +D
Sbjct: 796 QAKD 799


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G +   AD + IE R++A ++G+   I+AF  G+DI+  T AK +   ++ 
Sbjct: 715 IRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFQKGQDIHAATAAKIYKEKLED 774

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V++EQR+  K     + Y  G  VF
Sbjct: 775 VTREQRSKAKTANFGIIY--GISVF 797


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F+    +
Sbjct: 693 IRHAFIAREGRKVLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFTE 752

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 753 VTTEQRRRAKAVNFGLIY 770


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R++A +A ++  + AF +  D++  T A+ F  P++ 
Sbjct: 678 IRQAFIAPQGYKLLAADYSQIELRIMAHLAKDEGLLDAFRHDLDVHRATAAEVFGVPLED 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR   K +   L Y  G   F  +A   G++
Sbjct: 738 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 769


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 121/305 (39%), Gaps = 59/305 (19%)

Query: 161 EYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +Y   D E T  L++RL P              ER +  +   +  RG ++D D + ++ 
Sbjct: 500 KYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMS 559

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
              AQ+   L+ +I +L  G   +      L   LF   G +      G       +S  
Sbjct: 560 NAFAQKMAGLEAEIHELA-GESFNVGSPAQLGEILFEKMGFE-----GGKTGKSGKYSTP 613

Query: 271 TQLAKDLI--------------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
             + +DL               L++L S+ +  L+ +   E     GR+  +    GA+ 
Sbjct: 614 ADVLEDLATEHDLPRRVLDWRQLSKLKSTYTDALQDHINPET----GRVHTSYSIAGAN- 668

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +      QN+P   RSEE                         +R   +A  G  L
Sbjct: 669 TGRLASTDPNLQNIPV--RSEE----------------------GRRIREAFVAEPGHVL 704

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V  D + IE R+LA IAG D    AF +G DI+  T ++ F+ P+D+++ E R   K + 
Sbjct: 705 VSLDYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAIN 764

Query: 437 LALGY 441
             + Y
Sbjct: 765 FGVIY 769


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  LV AD + IE RVLA +A E   I+ F    DI+  T ++ F+ P+++
Sbjct: 633 LRKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEE 692

Query: 424 VSKEQRAIGKVMELALGY 441
           V+KE R+  K +   + Y
Sbjct: 693 VTKELRSAAKAVNFGIVY 710


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A    KLV AD + +E RVLA ++G++  I AF +GEDI+  T ++ F+  I  
Sbjct: 643 IRKVFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKD 702

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   + Y
Sbjct: 703 VTSKQRIEAKAINFGIIY 720


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 133/319 (41%), Gaps = 65/319 (20%)

Query: 161 EYCKRDVEAT---RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           E  +R +EA     +L+ R+ +PL +   D+ L        G R+D + + +L    AQ 
Sbjct: 515 ERLQRQLEAEPALHDLYYRVELPLIEVLTDMEL-------TGIRLDQEYLRELGRHFAQR 567

Query: 217 RKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGID-----LVDMSEG----TLKSIL 265
              L E I +   G   I S +Q   L   LF   GID     L  +  G    T + + 
Sbjct: 568 IADLVERIYQQAGGPFNINSGQQ---LNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLE 624

Query: 266 SHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             S +  +A D++    L +L S+      ++ L + V+   GR+  +    GA+ TGR 
Sbjct: 625 ELSQLYPIAADILTYRQLTKLKST-----YIDALPDLVNPRTGRIHTSYNQLGAA-TGRL 678

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E   EI                         R   +A  G + V A
Sbjct: 679 SSNNPNLQNIPVRTEEGREI-------------------------RRAFVAEPGWRFVAA 713

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA ++G++  I AF  G DI+  T ++ F      V K QR + K +   +
Sbjct: 714 DYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGV 773

Query: 440 GYQGGAKVFKTMASHCGLD 458
            Y  G   F  +A   G++
Sbjct: 774 IY--GISAFG-LAQRLGIE 789


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     ID+
Sbjct: 692 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQ 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTSEQRRRAKAVNFGLIY 769


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 25/171 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A  G  L+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  PI+ 
Sbjct: 737 IRTAFVAEPGNVLISADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEG 796

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           +  E R   K +   + Y     G A       S  G  ++++ +       + D  +AE
Sbjct: 797 MPSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIRKYFERFPGIKDYMDATKAE 856

Query: 480 SHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKA 509
           +            +  YPE               A+   + G+A +++++A
Sbjct: 857 AKENGYVTTIFGRRAHYPEIRSSNPQVRAFNERAAINAPIQGSAADIIRRA 907


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 41/295 (13%)

Query: 162 YCKRDVEATRELFKRLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           Y   D + T ++   L PL    D  R ++ L+   ++  YRI+ + VL     +AQ+  
Sbjct: 496 YSCEDSDQTLDVHLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSH 555

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           +L + I++L       + Q + L          F   G+ +V  +    +S      + +
Sbjct: 556 ELGQRILQLETEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARST-DEEVLEK 614

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           LA+D  L        ++ KL     + L++ A+   GR+  T      + TGR S     
Sbjct: 615 LAEDYPLPAKLLEHRSLTKLKGTYTDKLAQLALPRTGRVH-THYAQAVAVTGRLSSNDPN 673

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P          +T +     E    P G        C+IAS       AD + IE 
Sbjct: 674 LQNIP---------IRTAEGRRVREAFVAPPG--------CVIAS-------ADYSQIEL 709

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           R++A I+G+   + AF  G D++  T A+ F   +D+V+ EQR   KV+   L Y
Sbjct: 710 RIMAHISGDHALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIY 764


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     ID+
Sbjct: 692 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQ 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 752 VTSEQRRRAKAVNFGLIY 769


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  L+ AD + IE R+LA +  ++  + AF  G DI+  T AK F    D 
Sbjct: 690 IRKAFVPREGWTLLAADYSQIELRILAALTADEGLLTAFREGRDIHTATAAKIFEVDADT 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           VS++QR+  K++   + Y  G   F  +A   G   +  +QN+
Sbjct: 750 VSRDQRSTAKMVNFGIPY--GISAFG-LAQRLGTVSRTEAQNI 789


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 26/167 (15%)

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           DLILN    +      +  L E +  DG++    Q    + TGR S      QN+P   R
Sbjct: 604 DLILNYRQLNKLQSTYVEGLQEFIHEDGKIHSRFQ-QTLTSTGRLSSADPNLQNIPI--R 660

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAG 394
           SEE                         +R   + S+   ++ + D + IE RVLA I+G
Sbjct: 661 SEE----------------------GRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISG 698

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +    +AF N EDI+ +T  K +N P ++V+   R   K +   + Y
Sbjct: 699 DKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSNMRRNAKAVNFGIVY 745


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 40/219 (18%)

Query: 250 GIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRG 307
           G+ +    E TL+     H+ +  L +   L++ ASS G  +L +      V +DGRLR 
Sbjct: 194 GVPVSATDEETLEPYAKEHAAVASLLQWKELHKFASSFGENLLAM------VDTDGRLRT 247

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                GA+ +GR    +    NL           Q I A    E   +P       VR C
Sbjct: 248 DYAQIGAA-SGR---IICSKPNL-----------QQIPAEEEEEGQEEP-------VRHC 285

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  G +++ ADL+ IE R+LA ++ +   ++ FA G+D++  T    F+   +  +K 
Sbjct: 286 FVAPPGYRILKADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKR 345

Query: 428 Q-------RAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                   R I K +   L Y  GA     +A+  G+DL
Sbjct: 346 HLYKGVPGRKIAKTINFGLAYGMGA---NGLANRAGVDL 381


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L + +  DGR+  T+    A++TGR S      QN+  R E S E               
Sbjct: 617 LKKYIHPDGRIH-TIYNQCATQTGRLSSTEPNLQNISVRDEESRE--------------- 660

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     VR   + S G  LV +D + IE R+LA +A E   + AF +  DI+  T 
Sbjct: 661 ----------VRKAFLPSEGNVLVASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTA 710

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  F  P+D+V  + R   K +   + Y
Sbjct: 711 SDVFQIPLDQVDAKHRRQAKAVNFGIVY 738


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +++ AD + IE R++A ++ +   IKAF   +DI+  T A+ FN  ++ 
Sbjct: 681 IRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVFNVSVET 740

Query: 424 VSKEQRAIGKVMELALGY 441
            + EQR   K +   L Y
Sbjct: 741 ATDEQRRSAKAINFGLIY 758


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 31/157 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     L   +  DGR+  +      + TGR S      QN+P              
Sbjct: 569 KLNSTYVEGLIHVIDQDGRIHSSFN-QTVTTTGRLSSTEPNLQNIP-------------- 613

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFAN 404
                  I   +G A   +R   + ++ + L++ AD + IE RVLA +A ++    A+  
Sbjct: 614 -------IKYEMGRA---IRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKTAYLE 663

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             DI+  T ++ FN P+D+V+KE+R+  K +   + Y
Sbjct: 664 HIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVY 700


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +AV+ DGR+  TL     + TGR S      QN+P   R++E                
Sbjct: 616 LIKAVADDGRIHTTLH-QTITATGRLSSVDPNLQNIPV--RTDE---------------- 656

Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G  +L+ AD + IE R++A ++ ++  I+AF +G D +  T 
Sbjct: 657 ------GRRIREAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATA 710

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A+ F+    +V+ EQRA  K M   L Y
Sbjct: 711 ARVFDVDPTEVTGEQRAKIKAMNYGLAY 738


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357
           +  DGR+         +RTGR S      QN+P R E   E+                  
Sbjct: 577 IGPDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRTELGREL------------------ 617

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  R   +A  G  LV AD + IE RVLA IA ++  IKAF + EDI+  T ++ F
Sbjct: 618 -------RKFFLAKEGWVLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVF 670

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445
             P + V+   R+  K +   + Y  GA
Sbjct: 671 GMPPEMVTPLMRSRAKAVNFGIVYGIGA 698


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS   A  GK LV++D + IE R+ +   G++  I+AF  G D++  T +       ++
Sbjct: 11  LRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYTASILLGKREEE 70

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ-QFSQNVKST-----STFEDWEQ 477
           VSKE+R + K +   L Y   AK     A   G+DL    +Q ++        +F++W +
Sbjct: 71  VSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFFEYFVSFKNWHE 130

Query: 478 AESHHL 483
                L
Sbjct: 131 KVKREL 136


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 645 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 704

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 705 VTGEQRRSAKAINFGLIY 722


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           ++ L EAV+ DGR+  T    GA+ TGR S      QN+P R E    I         RG
Sbjct: 613 IDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEAGRRI---------RG 662

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                          +  + +    L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 663 ---------------AFRVGTGYATLITADYSQIEMRVMAHLSQDPGLIEAYRAGEDLHN 707

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +K F+ P++ V+ E R   K M   L Y
Sbjct: 708 YVGSKVFDVPVEHVTPELRRRVKAMSYGLVY 738


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSC---------IIASNGKKLVVADLAGIE 385
           R      QTI A  R  +I DP  L +  +R+          ++ S  + L+ AD + IE
Sbjct: 636 RIHTTFQQTIAATGRLSSI-DP-NLQNIPIRTAEGRRIRQAFVVGSGHESLMTADYSQIE 693

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            R++A ++G+   I+AF +GED++    ++A++ PI+ V  E R   K M   L Y
Sbjct: 694 MRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDVDPEMRRRIKAMSYGLAY 749


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 25/172 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K++ AD + IE R++A ++ +     AF+ G+DI+ +T A+ F   ++ 
Sbjct: 727 IRQAFIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALEN 786

Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469
           V+ EQR   K +   L Y              +G A+ +  +       +Q F  N++  
Sbjct: 787 VTAEQRRSAKAINFGLIYGMSSFGLSRQLGIARGDAQRYMDLYFQRYPGVQTFMTNIREK 846

Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510
           +  + + E      L++ D     A++ K          + GTA +++K+A 
Sbjct: 847 AKSQGYVETLFGRRLYLPDIQSANAMRRKAAERVAINAPMQGTAADIIKRAM 898


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A +D  + AF +  D++  T A+ F  P++ 
Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ +QR   K +   L Y  G   F  +A   G++
Sbjct: 734 VNGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 23/150 (15%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L      DGR+R T    G + TGR S      QN+P   R+EE   Q  QA     
Sbjct: 748 LDALPNLTHPDGRIRATFN-QGVTATGRLSSSEPNLQNIP--VRTEEG-RQVRQAF---- 799

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                  +A D  R          L+ AD + IE RVLA  + +   ++AF    DI+  
Sbjct: 800 -------VAGDPARQV--------LLTADYSQIELRVLAHFSRDPALLRAFEEDRDIHAD 844

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             AK F   +D V+ +QR + K +   + Y
Sbjct: 845 VAAKIFGVALDSVTSDQRRMAKTVNFGVIY 874


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           VR   IA N    L+ AD + IE R++A ++ E   I +F   EDI+ +T AK F+ P++
Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V++EQR+  K +   + Y
Sbjct: 752 EVTREQRSHAKTVNFGIIY 770


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + IE R++A ++ +   + AF  G+D++  T A+ F   +D+
Sbjct: 657 IRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAFKEGQDVHRATAAEVFEVSLDE 716

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 717 VSGDQRRKAKAINFGLIY 734


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 32/163 (19%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K++R   K +
Sbjct: 641 FLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAV 700

Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471
              L Y     G +K+ K   S   GL                  ++Q S+N K T+   
Sbjct: 701 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 760

Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 DWE +       +      AV  ++ G+A EL+K A 
Sbjct: 761 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 799


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+  D + IE R+LA +AG D   +AFA G+DI+  T ++ FN P+ +
Sbjct: 709 IREAFVAEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSE 768

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 769 MTPDIRRQAKAINFGVIY 786


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTGEQRRSAKAINFGLIY 766


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 37/205 (18%)

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILK-LNTLSEAVSSDGRLRG 307
           G+DL D  E TL     H  + +L +      R+++ G    K LN       + GR+  
Sbjct: 364 GLDLPDTREDTLAGYREHPLVAKLLRYREAAKRVSTYGKEWAKHLN------PATGRIHP 417

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           + Q  GA  TGR +      Q +PR                      DP       +R  
Sbjct: 418 SWQQIGAE-TGRMACRKPNLQQVPR----------------------DP------ALRRA 448

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
                G+ ++ AD + IE R+ A IA E   ++AF  G+D++  T +     P+++V KE
Sbjct: 449 FRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKDLHALTASLVLGKPLEEVGKE 508

Query: 428 QRAIGKVMELALGYQGGAKVFKTMA 452
            R + K +   L Y  GA+  +  A
Sbjct: 509 DRQLAKALNFGLLYGLGAEGLRRYA 533


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           VR   IA N    L+ AD + IE R++A ++ E   I +F   EDI+ +T AK F+ P++
Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V++EQR+  K +   + Y
Sbjct: 752 EVTREQRSHAKTVNFGIIY 770


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F    + 
Sbjct: 619 IRRAFIAEDGWQILAADYSQIELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPEA 678

Query: 424 VSKEQRAIGKVMELALGY 441
           VS+EQR   K +   L Y
Sbjct: 679 VSREQRRDAKAINFGLIY 696


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +  DGR+ G       + TGR S      QN+P +             +  G  I 
Sbjct: 588 LAVFIGDDGRIHGKFN-QTVTATGRLSSTEPNLQNIPVR-------------MELGRMIR 633

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                  DCV            V AD + IE RVLA  +G++  IKA+    DI+  T +
Sbjct: 634 KVFVPKEDCV-----------FVDADYSQIELRVLAHCSGDEQLIKAYREATDIHRMTAS 682

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+TP D+V+  QR   K +   + Y
Sbjct: 683 QVFHTPFDEVTDLQRRNAKAVNFGIVY 709


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 13/144 (9%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VRS  +A  G K++ AD + IE R+L++ A  +     F  GEDI+ +T A+ F    D+
Sbjct: 667 VRSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 726

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V++E R   K +   + Y  G   F       G+  Q    N ++      + Q      
Sbjct: 727 VTEEHRRKAKAINFGVIY--GISAF-------GVAKQLNISNTEAAQYINHYFQEYPSIR 777

Query: 484 WMQDQYPEFAVKD----KLIGTAC 503
              D+  +FAV++     +IG  C
Sbjct: 778 QYMDETKKFAVENGYVKNMIGRRC 801


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  GK LV++D + IE R+ +   G++  IKAF  G+D++  T +       + 
Sbjct: 339 LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKDLHRYTASVLLGKKEED 398

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +SKE+R + K +   L Y   A+     A   G+DL
Sbjct: 399 ISKEERQLAKAVNFGLIYGISARGLSDYAKSYGIDL 434


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L +A  +DGR+  T Q   AS TGR S      QN+P R +    I         RG  I
Sbjct: 664 LQKAAVADGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRI---------RGAFI 713

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             P  L  D V         + L+ AD + IE R++  +A ++  I+A+A+GED++    
Sbjct: 714 VAPKIL--DGVEY-------EGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVG 764

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F    ++V+ + RA  K M   L Y
Sbjct: 765 SEVFGVAPEEVTPQMRAKVKAMSYGLAY 792


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 53/331 (16%)

Query: 161 EYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           EY   D + T  L+  L P              ER L  +   +   G ++D D++ +L 
Sbjct: 552 EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLS 611

Query: 211 ELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSE-----GTLKS 263
              AQ   +L+E+I  L        S +Q   L      + G       +       L  
Sbjct: 612 HAFAQRTVRLEEEINGLVGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDD 671

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTLQFYGASRTG 318
           + ++  I   A+ LI   L       LK +T ++A+ +      GR+  +    GA+ TG
Sbjct: 672 LAANEEIDGDARRLINTMLEWRQMTKLK-STYTDALPAYINAETGRIHTSYAL-GATTTG 729

Query: 319 RWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           R +      QN+P R +   EI                         R+  IA  G +L+
Sbjct: 730 RLASSDPNLQNIPIRTKEGREI-------------------------RTAFIADKGMQLI 764

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA +A      KAFA G DI+  T ++ F  P+  +  E R   K +  
Sbjct: 765 SADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINF 824

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            + Y  G   F  +A+   +  ++ S  +K+
Sbjct: 825 GIIY--GISAF-GLANQLSISREEASDYIKT 852


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA+ G KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 797 IRTAFIATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEG 856

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 857 MPSEIRRRAKAINFGIIY 874


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 533 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 592

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 593 VTGEQRRSAKAINFGLIY 610


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 30/161 (18%)

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           RL S+   +LK      +VS DGR+  T     A+ TGR S      QN+P   R+EE  
Sbjct: 606 RLKSTVDGLLK------SVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-- 654

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                    G  I           R+ ++    + L+ AD + IE R++A ++G++  I+
Sbjct: 655 ---------GRRIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIE 695

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +G D +  T +  F   + +V+ +QR   K M   L Y
Sbjct: 696 AFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNYGLAY 736


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 28/153 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   +  DG++  +      + TGR S      QN+P + E   EI              
Sbjct: 594 LKNVIDGDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKHEMGREI-------------- 638

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   + +N + ++  AD + IE R+L+ IA ++  I AF + +DI+  T
Sbjct: 639 -----------RKVFVPNNNESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTIT 687

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            ++ F  PID+V+   R+  K +   + Y  GA
Sbjct: 688 ASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGA 720


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA +G  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +KAF    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  +  DGR+ GT      + TGR S      QN+P R E            L R    
Sbjct: 588 LANYIGPDGRIHGTFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +   G   + AD + IE R+LA  +G+   I+A+   +DI+  T 
Sbjct: 631 ---------LIRKVFVPQEGYVFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTA 681

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F TP D+V+  QR   K +   + Y
Sbjct: 682 SQVFKTPFDEVTDLQRRNAKAVNFGIVY 709


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF    D++  T A+ F  P+D+
Sbjct: 721 IRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQ 780

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 781 VTSDQRRKAKAINFGLIY 798


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 27/164 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +A+ +DGR+  T Q   A+ TGR S      QN+P   R EE + +  +A   GE   
Sbjct: 627 LRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARHEEGM-RIREAFTVGE--- 679

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                  DC            L+ AD + IE R++A ++G+   I+AF +GED++    A
Sbjct: 680 -----GYDC------------LMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAA 722

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
                 +  V+ +QR+  K M   L Y  G   F  +A   G+D
Sbjct: 723 LVHGIEVGDVTAQQRSHVKAMSYGLAY--GLSTFG-LARQLGID 763


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ 
Sbjct: 690 IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 750 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 806

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
             A S   +++  +      PE               A+   + GTA +++KKA
Sbjct: 807 RSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 860


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E ++ D GR+  +    GA+ TGR +      QN+P   RSEE             
Sbjct: 647 DALQEHINPDTGRVHTSYSIAGAN-TGRLASNDPNLQNIPV--RSEE------------- 690

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  G  LV  D + IE R+LA +A  D   +AF +G DI+  
Sbjct: 691 ---------GRRIREAFVAPEGHTLVSLDYSQIELRILAHMADIDALKQAFRDGLDIHAM 741

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P+D+++ + R   K +   + Y
Sbjct: 742 TASEMFNVPLDEMTPDIRRQAKAINFGVIY 771


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +AS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   +  
Sbjct: 683 IRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALAD 742

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 743 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 777


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   +D 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELDN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 11/134 (8%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383
           P  +R    L QT+ A  R  +  DP    + +  D    +R   IA  G +L+ AD + 
Sbjct: 599 PETKRLHTSLNQTVAATGRLSS-TDPNLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQ 657

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E R+LA ++ +   ++ F  GEDI++ T  + FN P  +V+++ R   K +   + Y  
Sbjct: 658 VEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVY-- 715

Query: 444 GAKVFKTMASHCGL 457
           G   F  +AS+ G+
Sbjct: 716 GISPF-GLASNIGV 728


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 24/143 (16%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V+ DGR+  T Q    + TGR S      QN+P       + T   + + +G        
Sbjct: 627 VAEDGRIHTTYQ-QNVAATGRLSSKDPNLQNIP-------VRTDAGRRIRQG-------- 670

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                    I+    + L+  D + IE R++A ++G++  I+AF +GED++ T  A+ FN
Sbjct: 671 --------FIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFN 722

Query: 419 TPIDKVSKEQRAIGKVMELALGY 441
                V  EQR   K M   L Y
Sbjct: 723 VEPGSVDAEQRRRIKAMSYGLAY 745


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I +N K  +  D + IE RVLA ++ E   IKAF    DI++      FN   ++
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHLQAAKLIFNISDNQ 720

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ EQR I KV    + Y  G   F  +A+   +++ Q  Q +K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ 
Sbjct: 690 IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           VS EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 750 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 806

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
             A S   +++  +      PE               A+   + GTA +++KKA
Sbjct: 807 RSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 860


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKK+V AD + IE R++A ++ ++  +KAF+  +D++  T A+ F    ++
Sbjct: 691 IRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAFSEEQDVHRATAAEVFGVAPEQ 750

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   GL   Q
Sbjct: 751 VTTDLRRSAKAINFGLIY--GMSSF-GLAQQLGLSRSQ 785


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+  +  I++
Sbjct: 683 IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIEE 742

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 743 VSSEQRRRAKAINFGLIY 760


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 27/150 (18%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351
           + L++ ++ DGR+  + Q    + TGR S      QN+P R E  +EI            
Sbjct: 625 DGLAKVIADDGRIHSSFQ-QTVTATGRLSSTEPNLQNIPIRMELGKEI------------ 671

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        R    A  G   V +D + IE RVLA ++ +   I+A+  G+DI+  
Sbjct: 672 -------------RRVFPAMEGCVFVDSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRA 718

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T +  F+TP ++V+ +QR+  K +   + Y
Sbjct: 719 TASLVFHTPFEEVTDQQRSNAKAVNFGIVY 748


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 119/306 (38%), Gaps = 58/306 (18%)

Query: 160 GEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDL----- 203
           G Y   D + T +L  ++ P             + E  L  +   I   G +ID      
Sbjct: 495 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 554

Query: 204 ---DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
              +L L+L EL  +  +   E+        + S++Q   L+  LF   GI  +  + G 
Sbjct: 555 HSEELTLRLAELEKKAHEIAGEEFN------LSSTKQ---LQTILFEKQGIKPLKKTPGG 605

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGAS 315
             S  S   + +LA D  L ++      + KL +     L   ++   R   T      +
Sbjct: 606 APST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVT 664

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P   R+EE                         +R   IA     
Sbjct: 665 ATGRLSSTDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYV 700

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +
Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAI 760

Query: 436 ELALGY 441
              L Y
Sbjct: 761 NFGLIY 766


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G +LV  D + IE RVLA ++ +   +KAF +G D++  T A+ F  P  +
Sbjct: 694 IRRGFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAE 753

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           V+ EQR + K +   + Y     G A+         G  ++ + + +   S++
Sbjct: 754 VTSEQRRVAKAVNFGVIYGQSAFGLARQLGIPQGRAGKYIKAYFKKIPGVSSY 806


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 59/218 (27%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+C ++ +G   V  D + IE R+LA  + +   ++AF   EDI+  T    F T    
Sbjct: 644 MRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDIHSRTAISIFGTS--- 700

Query: 424 VSKEQRAIGKVMELALGYQGGA-------------------KVFKTMASHCGLDLQQFSQ 464
             KE+RA+ K +   L Y  GA                   K FK  AS     ++ F +
Sbjct: 701 -DKEKRAVAKTINFGLIYGMGASKLSNELGISRSDAKDYIEKYFKAFAS-----IKNFME 754

Query: 465 NVKS-------TST------FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW- 510
           N+KS       T+T      + D+  A      M   Y   +V  K  G+A +++KKA  
Sbjct: 755 NLKSEAKKNGYTTTLFGRKRYFDFANATPMQFAM---YERESVNTKFQGSAADIIKKAMV 811

Query: 511 --------------RAKHQGVLQLWKDLTEGFACVVQE 534
                         +   + + ++  D++E F   +QE
Sbjct: 812 EISPFLNENTRLLLQIHDELIFEVRDDMSESFGKKMQE 849


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A  A +   I+AF  G DI+  T A+      D 
Sbjct: 700 IRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVLIRAFQEGHDIHRATAAEILGKAFDD 759

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           V+ E+R   K +   L Y  G   F  +A   G   QQ    +K
Sbjct: 760 VTSEERRQAKAVNFGLLY--GMSEFG-LAKQLGFTRQQAQDYIK 800


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ 
Sbjct: 690 IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHTATAAEIMGVSIED 749

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 750 VSSEQRRRAKAVNFGLIY 767


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G KLV AD + IE R++A ++G+   + AFA G+DI+  T A+ F   ++ 
Sbjct: 677 IRQAFIPCAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEA 736

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R   K +   L Y
Sbjct: 737 VTSDMRRSAKAINFGLIY 754


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S+   L++ AD + +E R++A ++G++  I AF +GEDI+  T AK FN  +D
Sbjct: 718 IRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDIHAATAAKLFNKTLD 777

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E+R   K     + Y
Sbjct: 778 EVTSEERRRAKTANFGIIY 796


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 27/152 (17%)

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           + TL +A +  DGR+  T +   A+ TGR S      QN+P                NR 
Sbjct: 606 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP----------------NR- 647

Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
               DP G     +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G+D +
Sbjct: 648 ----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFH 700

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
               +  +  P+D ++ +QR+  K M   L Y
Sbjct: 701 KYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 732


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 177/424 (41%), Gaps = 76/424 (17%)

Query: 46  DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D   +  MP  D L+ L+    D+ ++ +  N  ++  +F +  GID+           A
Sbjct: 397 DDLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDVTPIDDTMLLSYA 455

Query: 101 RTNGLPSSLKNACLALNFSEHL-----TKMEEGKALIARFCKGSI-DSPPYDCTRAN-HV 153
              G+     +  L+  + +H      + +  GK+ I  F + SI D+ PY    A+  +
Sbjct: 456 LHGGMHGHGMD-TLSERYLDHQPIPIKSLLGSGKSAIT-FDRVSIEDATPYAAEDADITL 513

Query: 154 QAWQLF-GEYCKRDVEATRELFKR-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           + WQ F  +  ++ V    E  +R L+P+      L  ++Q     G ++D D + ++  
Sbjct: 514 RLWQQFKPQLHQKQVTTVYETLERPLVPV------LAQMEQ----HGIKVDRDTLSRMSN 563

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
             +Q+   L+ +I +L  G   +      L   LF     D + +  G      +++   
Sbjct: 564 AFSQKMAALEAEIHELA-GETFNVGSPKQLGEILF-----DKMSLPGGKKGKTGAYATGA 617

Query: 272 QLAKDLI--------------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            + +DL               L++L S+ +  L+ +   E     GR+  +    GA+ T
Sbjct: 618 DILEDLATEHTLPARVLDWRQLSKLKSTYTDALQEHIHPET----GRVHTSYLQTGAN-T 672

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR +      QN+P   RSEE                         +R   +A  G  L+
Sbjct: 673 GRLASSDPNLQNIPV--RSEE----------------------GRRIREAFVADEGNVLL 708

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE R+LA +AG D   +AFA+G DI+  T ++ F+ P+++++ + R   K +  
Sbjct: 709 SLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINF 768

Query: 438 ALGY 441
            + Y
Sbjct: 769 GVIY 772


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A+ G +LVVAD + IE RVLA ++G++  I  F  G DI+  T A  F    DK
Sbjct: 605 IRKAFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDK 664

Query: 424 VSKEQRAIGKVM 435
           V  EQR   K +
Sbjct: 665 VGAEQRRAAKCL 676


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 47/83 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A ++ ++  + AF N  D++  T A+ F   +++
Sbjct: 700 IRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNE 759

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
           V+ +QR   K +   L Y  GA+
Sbjct: 760 VTSDQRRGAKAINFGLIYGMGAQ 782


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 47/83 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A ++ ++  + AF N  D++  T A+ F   +++
Sbjct: 696 IRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNE 755

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
           V+ +QR   K +   L Y  GA+
Sbjct: 756 VTSDQRRGAKAINFGLIYGMGAQ 778


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I++
Sbjct: 683 IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILGLDIEQ 742

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 743 VSSEQRRRAKAINFGLIY 760


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 143/325 (44%), Gaps = 50/325 (15%)

Query: 162 YCKRDVEATRELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           Y   D + T +L  +L P+         +D E  L  +   +  RG  ID + + +  + 
Sbjct: 429 YAAEDADITLQLHHKLYPMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKR 488

Query: 213 IAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           + +  K L+E+ ++L      + S +Q   L+  LF    I ++  +  T +   + S +
Sbjct: 489 LKERIKILEEEAIQLAGKPFNLSSPKQ---LQEILFNEQKIPVIAKTP-TGQPSTAESVL 544

Query: 271 TQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324
            +LA D  L  +      + KL     + L + ++++ GR+  +      + TGR S   
Sbjct: 545 QELAFDYRLAAVILEHRGLTKLVSTYIDALPKKINAETGRVHTSYN-QAVAATGRLSSSE 603

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P   R+EE                         +R+  IA   + ++ AD + I
Sbjct: 604 PNLQNIPI--RNEE----------------------GRLIRTAFIAPPEQVILAADYSQI 639

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A ++ ++  + AFANG DI+  T A+ F+   ++V+ EQR   K +   L Y  G
Sbjct: 640 ELRIMAHLSQDENLLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIY--G 697

Query: 445 AKVFKTMASHCGLDLQQFSQNVKST 469
              F  +A   G++ +Q +QN   T
Sbjct: 698 MSAFG-LAKQIGVE-RQDAQNYIDT 720


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 39/190 (20%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT-LQF 311
           LV      L+ +L+H + T+L + ++                L + V+ DGR+  T LQ 
Sbjct: 553 LVKTQHPFLEHLLAHRDRTKLKQTVV---------------GLQKVVADDGRIHTTYLQT 597

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A  TGR S      QN+P +  +   +    QA             A D         
Sbjct: 598 VAA--TGRLSSKDPNLQNIPVRTDAGRRIRSVFQA-------------AQD--------D 634

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
             + L+  D + IE R++A ++G++  I+AF +GED++     + F  PI+ V+ +QR+ 
Sbjct: 635 GYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVTDQQRSK 694

Query: 432 GKVMELALGY 441
            K M   L Y
Sbjct: 695 VKAMSYGLVY 704


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA+ G  LV AD + IE R++A I+G++  I AF  G DI+  T ++ F   +++
Sbjct: 688 VREAFIAAPGCVLVSADYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNE 747

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ + R   KV+   L Y  G   F  +A + G+
Sbjct: 748 VTSDHRRTAKVINFGLIY--GMSAF-GLAGNLGI 778


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+  +  I+ 
Sbjct: 683 IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIEN 742

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 743 VSSEQRRRAKAINFGLIY 760


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 120/279 (43%), Gaps = 45/279 (16%)

Query: 175 KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGI 231
           + L+PL  D E  L  + + +   G R+D +L+  ++  +  E   L+ +I +LT  + +
Sbjct: 477 RELLPLFDDVELPLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWELTGEEFM 536

Query: 232 IRSSRQTYALRMYLFLITGIDL-------VDMSEGTLKSILS-HSNITQLAKDLILNRLA 283
           I S +Q   L   LF   G+                L++I   H  I ++ +   L +LA
Sbjct: 537 IGSPQQ---LGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIERWRELTKLA 593

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           S+      L+ L   +S  D RL  T     A+ TGR S      QN+P           
Sbjct: 594 ST-----YLDALPLLISPEDHRLHTTFNQVTAA-TGRLSSTNPNLQNIP----------- 636

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                     I  PLG     +R+C +A  G  L+ AD + +E RVLA IAGE+   + F
Sbjct: 637 ----------IRTPLGRE---IRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEIF 683

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             GED++  T A       +++    R+  K++   + Y
Sbjct: 684 RRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVY 722


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A++G +LV  D + IE R+LA +A  +   +AF  G DI+  T ++ FN P+D+
Sbjct: 696 IREAFVAASGHRLVSLDYSQIELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQ 755

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 756 MTPEIRRQAKAINFGVIY 773


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 59/301 (19%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R V  T+ +++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 513 WQLFKPQLHR-VGVTK-VYETL------ERPLVPVLAAMERSGVKVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L++DI +L  G   +      L   LF     D + +  G      +++    + +
Sbjct: 565 KMAGLEDDIYELA-GRKFNVGSPKQLGEILF-----DEMGLEGGKKGKTGAYATGADVLE 618

Query: 276 DLI--------------LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320
           DL               L++L S+ +     + L + ++ D GR+  +    GAS TGR 
Sbjct: 619 DLATEHDLPARVLDWRQLSKLKSTYT-----DALQDHINPDTGRVHTSYSIAGAS-TGRL 672

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P   RSEE                         +R   +A  GK LV  D
Sbjct: 673 ASTDPNLQNIPI--RSEE----------------------GRRIREAFVAEPGKALVALD 708

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA IA      +AF +G DI+  T ++ F  P+D+++ + R   K +   + 
Sbjct: 709 YSQIELRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVI 768

Query: 441 Y 441
           Y
Sbjct: 769 Y 769


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE R++A ++ ++  + A   GEDI+    A+ F+  +D+
Sbjct: 675 IRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEKLLSALTAGEDIHKAVAAEVFDLAMDE 734

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ EQR   K +   L Y  G + F  +A   G++  Q
Sbjct: 735 VTTEQRRQAKAVNFGLMY--GMQAFG-LAKQLGIERHQ 769


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 139/363 (38%), Gaps = 77/363 (21%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI- 251
           ++   G  +DLD      + ++ +   LDE    LT  IIR + + + +R    L   + 
Sbjct: 499 SMEQAGIGVDLDAFAGFLDDVSTQ---LDE----LTRSIIRHAGEPFNIRSSQQLAAILF 551

Query: 252 DLVDMSEGT-------------LKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           D +D+ EG              L++I S H  +  + +  +L +L S+      L  L +
Sbjct: 552 DKLDIKEGNKTATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRST-----YLEPLPK 606

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V  D RL        A+ TGR S      QN+P +                        
Sbjct: 607 LVGEDSRLHTHFNQL-ATATGRLSSSQPNLQNIPIR------------------------ 641

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           G     +R+C IA  G  L  AD + IE RVLA  +G+   I AF N EDI+  T A   
Sbjct: 642 GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLT 701

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +     V  ++R   K +   L Y  G    A+      +     ++++   + +   + 
Sbjct: 702 DKQPQDVLADERRNAKTINFGLIYGMGPQKLARELDITVNQAKEFIERYFDKLATLKAYY 761

Query: 474 DW--EQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D   + AESH                   +  +  Q    AV   + G+A +++K A  A
Sbjct: 762 DTIVKDAESHGFVTTLAGRRRLLPELHSRNTQLVSQARRQAVNTVIQGSAADIIKMAMVA 821

Query: 513 KHQ 515
            H+
Sbjct: 822 AHK 824


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  ++ DGR+  T      + TGR S      QN+P   R+E         L R     
Sbjct: 597 LANYIAEDGRIHSTFN-QTITATGRISSTEPNLQNIPV--RTE---------LGR----- 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   I  +G   + AD + IE RVLA ++G++  I+A+   +DI+  T +
Sbjct: 640 --------LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITAS 691

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+ P D+V+  QR   K +   + Y
Sbjct: 692 QVFHIPFDEVTPLQRRNAKAVNFGIVY 718


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   +  D ++  +      + TGR S      QN+P + E  +EI             I
Sbjct: 592 LKAVIQEDDKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGKEI-----------RKI 639

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             P     DCV           ++ AD + IE RVLA IA ++  I AF N  DI+  T 
Sbjct: 640 FVPEN--EDCV-----------ILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTA 686

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  PID+V+  QR+  K +   + Y  G
Sbjct: 687 SEVFKVPIDEVTSAQRSNAKAVNFGIVYGIG 717


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 27/152 (17%)

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           + TL +A +  DGR+  T +   A+ TGR S      QN+P                NR 
Sbjct: 659 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP----------------NR- 700

Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
               DP G     +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G+D +
Sbjct: 701 ----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFH 753

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
               +  +  P+D ++ +QR+  K M   L Y
Sbjct: 754 KYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 785


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  ++ DGR+  T      + TGR S      QN+P   R+E         L R     
Sbjct: 597 LANYIAEDGRIHSTFN-QTITATGRISSTEPNLQNIPV--RTE---------LGR----- 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   I  +G   + AD + IE RVLA ++G++  I+A+   +DI+  T +
Sbjct: 640 --------LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITAS 691

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+ P D+V+  QR   K +   + Y
Sbjct: 692 QVFHIPFDEVTPLQRRNAKAVNFGIVY 718


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F+    +
Sbjct: 676 IRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 735

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 736 VTSDQRRRAKAVNFGLIY 753


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR C +A  G+ +   D    E RVLA ++G+   I+AF +G D+++ T   A+  P  +
Sbjct: 375 VRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAW--PDRE 432

Query: 424 VSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           ++K+  +R   K +     Y GGA   KT+A   GLD++   Q V
Sbjct: 433 ITKDSPERKYAKTVNFGRVYGGGA---KTVAEQTGLDMEAAKQVV 474


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 176/451 (39%), Gaps = 72/451 (15%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSV 98
           PV+L  R E+ A      Q LR+     V HN+ ++  + ++TLGI +     +   T +
Sbjct: 71  PVELGPRYEEEAR-----QALRN-VKGFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKI 124

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANH 152
           LA     P   K   +     E +         E  K L+A   +    +  +  T+   
Sbjct: 125 LAHLVD-PRPFKEGGIGHKLEELVKHYIDAPVAENVKTLMATLAREYKTTKAHIWTKVEW 183

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLD 204
              +  +  Y   D      L ++LIPL           E  L  +   +  RG+ +D++
Sbjct: 184 TNPY--YQLYAGMDPILAARLLQKLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVE 241

Query: 205 LVLKLQE--LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
              KL E  L  Q+      DI+   + +    +   AL     +  G+ + + +EG   
Sbjct: 242 YSEKLSEDMLRKQDYWASKADILYGLENVNSPIQVAEAL-----MRRGVKITERTEGGQP 296

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +            ++L+RL   G      + L+EA+S             A + G+W  
Sbjct: 297 KV----------DKVLLDRLIKEG------DPLAEAISE------------AKKWGKWEK 328

Query: 323 CVFQPQNLPRQERSE-EILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLV 377
              +     R  +         +QA     +I    A  L      VR C +A  G+ + 
Sbjct: 329 TWVRKFLDSRDSKDRCHASINPLQARTARMSITGIPAQTLPSGDWLVRRCFLADEGELMA 388

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVM 435
             D    E RVLA ++G+   I+AF +G D+++ T   A+  P  +++K+  +R   K +
Sbjct: 389 SVDYQAQELRVLAALSGDRTMIQAFRDGADLHLMTARAAW--PDREITKDSPERKYAKTV 446

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
                Y GGA   KT+A   GLD++   Q V
Sbjct: 447 NFGRVYGGGA---KTVAEQTGLDMEAAKQVV 474


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 24/165 (14%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R LA ++ +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +   
Sbjct: 648 ADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFG 707

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQ------- 486
           + Y     G AKV K         +Q +       + F E+  Q  +  L +        
Sbjct: 708 IVYGQQAFGLAKVLKISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRER 767

Query: 487 -----DQYP-------EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                +++P        FAV  ++ G+A EL+K A     Q + Q
Sbjct: 768 IIDSWNEFPGSRAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I   G +   AD + IE RV+A ++ +   + AF  G DI+  T AK +N P+ +
Sbjct: 688 IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDAFREGYDIHAATAAKIYNKPVSE 747

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V++++R   K     + Y  G  VF
Sbjct: 748 VTRDERTKAKRANFGIIY--GITVF 770


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 33/179 (18%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + +LA+   L RL     A+ KL     + L + V   DGR+  T    GA+ TGR S  
Sbjct: 585 LEKLAEQHELPRLVLEHRALAKLKGTYVDALPQLVDPRDGRIHTTFHQAGAA-TGRLSSS 643

Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               QN+P R E S  I                         R+  +A  G +L+ AD +
Sbjct: 644 DPNLQNIPVRTELSRRI-------------------------RAAFVAPPGWRLLSADYS 678

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R+LA  + +   ++AF   ED++  T A+ F     +V+ + R I KV+   + Y
Sbjct: 679 QIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDMRRIAKVLNFGIAY 737


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 360 ASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           A   +R   I    + L++ AD + IE RVLA I+G+   IKAF NGEDI+  T A+ F 
Sbjct: 636 AGRLIRKVFIPGRPENLLLTADYSQIELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFA 695

Query: 419 TPIDKVSKEQRAIGKVMELALGY 441
              ++V++E R   K +   + Y
Sbjct: 696 VRPEEVTREMRTRAKAVNFGIVY 718


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 3/128 (2%)

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R C +A  G K V+AD + IE R+ A IA +   I+A+    D++  T +   N  I+ V
Sbjct: 1553 RECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDV 1612

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS--TSTFEDWEQAESHH 482
            +KE+R + K +   L +       + M +  G +L+      K   TS F +++   + H
Sbjct: 1613 NKEERQLAKAVNFGLIFGMSINGLR-MYAETGYNLKLTQNEAKEIYTSFFNNFKGILNWH 1671

Query: 483  LWMQDQYP 490
              +++  P
Sbjct: 1672 NSVKNSRP 1679


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%)

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSE------GT 260
           +A++ K+L  DI    + I  ++ +T+       L   LF + G+    + +       T
Sbjct: 526 LAEQSKELGADIASRVERIHEAAGETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYST 585

Query: 261 LKSILSH-SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              +LS  ++  Q+  D++  R  +   +   L+ L   +  D R+  T     A+ TGR
Sbjct: 586 NAKVLSDLADTYQIVADVLEYRERAKIKSTY-LDALPALIRGDHRIHTTFNQTVAA-TGR 643

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P   RSE                   LG     VR+     +G   +  
Sbjct: 644 LSSSDPNLQNIPT--RSE-------------------LG---HRVRTAFTVPSGHVFLAC 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R+LA ++G++  I AF +G D +  T ++ F  P+++V+ E R+  K +   +
Sbjct: 680 DYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGI 739

Query: 440 GY 441
            Y
Sbjct: 740 VY 741


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I+AFA+GED++    A+AF  P+ 
Sbjct: 670 IRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVAAQAFGLPVS 729

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V  E R   K M   L Y
Sbjct: 730 EVDPELRRRIKAMSYGLAY 748


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 29/187 (15%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L   +  DGR+  T     A+ TGR S      QN+P +                  
Sbjct: 578 LEPLPRLIGKDGRVHTTFNQL-ATATGRLSSSNPNLQNIPIR------------------ 618

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                 G     +RSC  AS G  L+ AD + +E RVLA  + +   + AF  G DI+  
Sbjct: 619 ------GSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTR 672

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVK 467
           T +  +    ++V+ ++R   K +   L Y  G    A+   T  +     +Q++ ++++
Sbjct: 673 TASLLYEKSQEEVTADERRNAKTINFGLIYGMGPQKLAQELNTTLNEAKKFIQRYFEHLQ 732

Query: 468 STSTFED 474
           +   F D
Sbjct: 733 AIKKFYD 739


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 26/150 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  + +  GA R+GR+S      QN+PR          T++ +               
Sbjct: 326 GRIHPSYRQCGA-RSGRFSCKQPNLQNVPR--------NCTVKGM--------------- 361

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R+C IA  G +++ AD + IE R++A I+G+   + A+  GED++  T +      ++
Sbjct: 362 --RACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLITGKLLE 419

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +V+ E R I K +   L Y  GA   +  A
Sbjct: 420 EVTTEDRRIAKSVNFGLIYGMGAAKLQAYA 449


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 106/258 (41%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V S+ R+  +    G + TGR S      QN+P       
Sbjct: 219 LNKLKTT-----YVDTLPNLVDSNSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 265

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 266 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 308

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           IKA+   +D++  T  + FN +  D V++EQR I K++  ++ Y     G AK  K    
Sbjct: 309 IKAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVK 368

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     +TFE    E  E H                   +  ++ Q    
Sbjct: 369 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERM 428

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 429 AVNTVIQGTAAEVLKKVM 446


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A  G KL+ AD + IE R+LA I       KAF +G DI+  T ++ F  P++ 
Sbjct: 710 IRTAFVARAGHKLISADYSQIELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEG 769

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  + +  G+D Q+  + +K+
Sbjct: 770 MPSEVRRRAKAINFGIIY--GISAFG-LGNQLGIDNQEAGRYIKT 811


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I +N K  +  D + IE RVLA ++ E   I AF    DI++      FN   D+
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ EQR I KV    + Y  G   F  +AS   + + Q  Q +K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 121/308 (39%), Gaps = 72/308 (23%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           ++ L + ++ DGR+  T      + TGR S      QN+P R E    I           
Sbjct: 580 VDALGQLIARDGRIHTTFA-QTVAETGRLSSKDPNLQNIPIRIEEGRRI----------- 627

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A  G  L+ AD + IE RV+A  +G+    +AF + +DI+ 
Sbjct: 628 --------------RKAFVARPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQDIHT 673

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
            T A+ F  P+D+V+ E R   K +   L Y     G A+      +     ++ +    
Sbjct: 674 RTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYGQTDFGLARSVGISRAEARAFIETYFAKF 733

Query: 467 KSTSTFEDWEQAES--------------------HHLWMQDQYPE-FAVKDKLIGTACEL 505
                + + ++AE+                    H ++   Q  E  A+   + GTA +L
Sbjct: 734 AGVRRYMEEKKAEAREKGYVTTLDGRRRPLPEINHRVFTIRQNAERMAINTPIQGTAADL 793

Query: 506 VKKAWRA-----KHQG-----VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           +K+A  A     + +G     +LQ+  +L   F C V E        V  + RLV R  +
Sbjct: 794 MKRAMIAVRRAMREEGLSARMILQVHDELV--FECPVGE--------VDRLARLVRREME 843

Query: 556 RDVHIVLP 563
             + + +P
Sbjct: 844 GAMKLDVP 851


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I +N K  +  D + IE RVLA ++ E   I AF    DI++      FN   D+
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ EQR I KV    + Y  G   F  +AS   + + Q  Q +K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPQDHVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1]
 gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1]
          Length = 1046

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 26/196 (13%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LAK  I+N+++SS +     ++L E      +L G     G + T R S      QNLP 
Sbjct: 678 LAKFSIVNKISSSFT-----DSLREYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLP- 730

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            E+S   L      + R      P G                KL+  D + +E  +LA +
Sbjct: 731 AEKSNTHLFNYKYPIKRMFVSRFPNG----------------KLINLDYSSLEFHILALV 774

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
             ED    AF  G+DI+ +  A  ++ P + V  EQR   K +   L Y  G      +A
Sbjct: 775 TKEDSMTGAFLEGKDIHTSNAALMYDVPYEDVIVEQRKAAKSIGFGLIYGKGDAA---LA 831

Query: 453 SHCGLDLQQFSQNVKS 468
              GL L++  + + +
Sbjct: 832 EDLGLSLEEAQEKINT 847


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L +A++SDGR+  T     A+ TGR S      QN+P   R+EE             
Sbjct: 637 LDGLIKAIASDGRIHTTFN-QTATATGRLSSTDPNLQNIPV--RTEE------------- 680

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R+  +   G + L+ AD + IE RV+A  + +   I+A+ +GED++ 
Sbjct: 681 ---------GRQIRAAFVPGEGYEALLTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHN 731

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ P+++V+ E R   K +   L Y
Sbjct: 732 FVGSQVFDVPVNEVTPELRRRVKALSYGLVY 762


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   +  DGR+         + TGR S      QN+P R E   EI  +    L  G+T 
Sbjct: 672 LKNVIDEDGRIHSNFN-QTVTTTGRLSSTDPNLQNIPIRHELGREI-RKVFIPLQEGDT- 728

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                                 LV  D + IE RVLA IAG++  I AF +  DI+  T 
Sbjct: 729 ----------------------LVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHTKTA 766

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F  P++ V+   R+  K +   + Y
Sbjct: 767 SEVFKVPVEDVTSLMRSRAKAVNFGIVY 794


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  L+  D + IE R+LA +AG D   +AFA G+DI+  T ++ FN P+++
Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 757 MTSDIRRQAKAINFGVIY 774


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +AV +DGR+  T Q   A+ TGR S      QN+P   R+EE +              
Sbjct: 614 LRKAVLADGRIHTTFQQTVAA-TGRLSSTDPNLQNIP--ARTEEGMR------------- 657

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R       G++ L+ AD + IE R++A ++G+   I AF +GED++    
Sbjct: 658 ---------IREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVA 708

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           A      +  V+ EQR+  K M   L Y  G   +  +A   G+D
Sbjct: 709 AMVHGIDVADVTAEQRSHVKAMSYGLAY--GLSTYG-LARQLGID 750


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  L+  D + IE R+LA +AG D   +AFA G+DI+  T ++ FN P+++
Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 757 MTSDIRRQAKAINFGVIY 774


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 733 IRTAFIAEPGNKLVSADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 792

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 793 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 834


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G+ +   D + IE R++A I+G++  ++AF  G D++  T A+ F   + +
Sbjct: 682 VREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQ 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   KV+   L Y
Sbjct: 742 VTSEQRRYAKVINFGLIY 759


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 31/184 (16%)

Query: 292 LNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           + TL ++V +SDGR+  T +   A+ TGR S      QN+P                NR 
Sbjct: 687 VQTLMDSVNTSDGRIHTTFEQTVAA-TGRLSSTDPNLQNIP----------------NRN 729

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                   +    +R+  + S+G   L+ +D + +E R++A ++G++  I+AF +G D +
Sbjct: 730 --------VEGREIRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFH 781

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKS 468
               +  +  P+D+++ +QR+  K M   L Y  G   +  +A   G+   Q  Q   K 
Sbjct: 782 KYVASLVYQVPLDQITPDQRSHIKAMSYGLAY--GLSTYG-LAQQLGISPAQSDQLKAKY 838

Query: 469 TSTF 472
            STF
Sbjct: 839 FSTF 842


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G+KL+  D + IE R++A ++G+   + AF +G D++    A+ F   ID+
Sbjct: 221 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 280

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  +R   K +   L Y
Sbjct: 281 VTPNERRAAKAINFGLIY 298


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A+ G KLV AD + IE R++A ++ +   + AF+ G+DI+  T A+ F    ++
Sbjct: 687 VRQAFVAAPGCKLVAADYSQIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVFGVENEE 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           V+ +QR   K +   L Y  G   F  +A   G++ +Q ++ ++
Sbjct: 747 VTIDQRRSAKAINFGLIY--GMSAFG-LARQLGINRKQAAEYIE 787


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 31/171 (18%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           + L E V+ D GR+  +    GA+ TGR S      QN+P R E    I           
Sbjct: 638 DKLPEMVNPDTGRVHTSYHQSGAA-TGRLSSSDPNLQNIPIRTEDGRRI----------- 685

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A  G +L+ AD + IE R++A ++ +   ++AF  G D++ 
Sbjct: 686 --------------RRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHR 731

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            T A+ F   +++V+  +R   K +   L Y  G   F  +A + G+D  Q
Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMY--GMSAFG-LARNLGIDRGQ 779


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRG-------ETIADPLGLASDCVRSCIIASNGKKLV 377
            +P   PR         QT+ A  R        + I   L L     ++ +    G+ L+
Sbjct: 596 LKPLVNPRTGSLHTSFNQTVTATGRLSSSEPNLQNIPVRLELGRRLRKAFVPHGPGRLLL 655

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA I+G++  I AF  GEDI+  T A+ F  P+ +V+   R   K +  
Sbjct: 656 AADYSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNF 715

Query: 438 ALGY 441
            + Y
Sbjct: 716 GIVY 719


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I  +G     AD + IE R++A ++G++  ++AF  G DI+  T AK ++  IDK
Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIWHEDIDK 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDAQRKKAKQANFGIIY 758


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G+KL+  D + IE R++A ++G+   + AF +G D++    A+ F   ID+
Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  +R   K +   L Y
Sbjct: 742 VTPNERRAAKAINFGLIY 759


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G+ +   D + IE R++A I+G++  ++AF  G D++  T A+ F   + +
Sbjct: 682 VREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQ 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   KV+   L Y
Sbjct: 742 VTSEQRRYAKVINFGLIY 759


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 39/211 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++ ++  ++AF  G+D++  T A+ F     +
Sbjct: 699 IREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLE 758

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG-------LDLQQFSQNVKSTSTFEDWE 476
           V+ EQR   KV+   L Y  G   F  +AS+ G       L + ++       + + D  
Sbjct: 759 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGIGRDAAKLYIDRYFARYPGVARYMDET 815

Query: 477 QAESHH-----------LWMQD---------QYPE-FAVKDKLIGTACELVKKAWRAKHQ 515
           +  +H            LW+ D         Q  E  A+   + GTA +L+K +  A   
Sbjct: 816 RLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLIKLSMLA--- 872

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANV 546
             +Q W D   G     + G  +  R+V  V
Sbjct: 873 --VQDWLD---GSPSAGKPGAPMRTRQVMQV 898


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I  +G     AD + IE R++A ++G++  ++AF  G DI+  T AK ++  IDK
Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIWHEDIDK 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDAQRKKAKQANFGIIY 758


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +AS+G + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  PID
Sbjct: 801 IRGAFVASDGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPID 860

Query: 423 KVSKEQRAIGKVMELALGY 441
           ++S +QR+  K M   L Y
Sbjct: 861 QISSDQRSHIKAMSYGLAY 879


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 25/170 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R++A ++ +   + AF  G D++  T A+ F   +D 
Sbjct: 698 IRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGLLSAFEKGLDVHRATAAEVFGVALDS 757

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLD---------------LQQFSQNVK 467
           V+ E R   K +   L Y  G   F      H G +               +Q++  N++
Sbjct: 758 VTPEMRRSAKAINFGLIY--GMSAFGLAKQLHVGRNEAQQYIDRYFERYPGVQRYMNNIR 815

Query: 468 STSTFEDWEQAESHHLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG 516
           + +     EQ     L+ +  Y P+   K+K    A E  + A  A  QG
Sbjct: 816 AQA----HEQGYVETLFGRRLYLPDINAKNKNFQLAAE--RTAINAPMQG 859


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 39/211 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++ ++  ++AF  G+D++  T A+ F     +
Sbjct: 712 IREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLE 771

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG-------LDLQQFSQNVKSTSTFEDWE 476
           V+ EQR   KV+   L Y  G   F  +AS+ G       L + ++       + + D  
Sbjct: 772 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGIGRDAAKLYIDRYFARYPGVARYMDET 828

Query: 477 QAESHH-----------LWMQD---------QYPE-FAVKDKLIGTACELVKKAWRAKHQ 515
           +  +H            LW+ D         Q  E  A+   + GTA +L+K +  A   
Sbjct: 829 RLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLIKLSMLA--- 885

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANV 546
             +Q W D   G     + G  +  R+V  V
Sbjct: 886 --VQDWLD---GSPSTGKPGAPMRTRQVMQV 911


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 108/256 (42%), Gaps = 33/256 (12%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITG 250
           T+   G R+D + + KL + +A+E   L+E I K+      I S +Q   L   LF    
Sbjct: 559 TVETNGVRLDSESLAKLSKELAKEVVVLEEKIYKIAGEQFNIASPKQ---LGEILFGKLQ 615

Query: 251 IDLVDMSEGTLKSILSHSNITQLA--KDLILNRLASSGSAILK---LNTLSEAVSSDGRL 305
           +D       + +       + +LA   +++ + L   G   LK   ++ L E V+    L
Sbjct: 616 LDPKAKKTKSGQYATGEEILVKLADKNEIVQHILDFRGLQKLKNTYVDALPELVNKKTGL 675

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P          +T Q                +  R
Sbjct: 676 IHTSYNQAVAATGRLSSTNPNLQNIP---------IRTAQG--------------REVRR 712

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           + I  S+   L+ AD + IE R++A  + +   IKAF NGEDI+ TT +K +  P+D+V 
Sbjct: 713 AFIPRSDEFVLLAADYSQIELRIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQVD 772

Query: 426 KEQRAIGKVMELALGY 441
            + R   K     + Y
Sbjct: 773 SDMRRKAKTANFGIIY 788


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +   LV AD + +E RVLA ++ +   I+AF +GEDI+  T ++ FN   ++
Sbjct: 641 IRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNSGEDIHRKTASQVFNVDFNQ 700

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R+  K +   + Y
Sbjct: 701 VTPELRSAAKAVNFGIIY 718


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA+ G KL+ AD + IE RVLA +A      KAFA G DI+  T ++ F  P++ 
Sbjct: 734 IRTAFIAAPGYKLISADYSQIELRVLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEG 793

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 794 MPGEVRRRAKAINFGIIY 811


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  PI+ 
Sbjct: 755 IRTAFISTPGHKLISADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEG 814

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 815 MPSEVRRRAKAINFGIIY 832


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 24/165 (14%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R LA ++ +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +   
Sbjct: 648 ADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFG 707

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQ------- 486
           + Y     G AKV K         +Q +       + F E+  Q  +  L +        
Sbjct: 708 IVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRER 767

Query: 487 -----DQYP-------EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                +++P        FAV  ++ G+A EL+K A     Q + Q
Sbjct: 768 IIDSWNEFPGSRAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G+KL+  D + IE R++A ++G+   + AF +G D++    A+ F   ID+
Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  +R   K +   L Y
Sbjct: 742 VTPNERRAAKAINFGLIY 759


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     I+ 
Sbjct: 692 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVNIED 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           V+ EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 752 VTSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 808

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
             A S   +++  Y      PE               A+   + GTA +++KKA
Sbjct: 809 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 862


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 28/158 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    G + TGR S      QN+P   R+ E                        
Sbjct: 664 GRIHTSFNQAGTT-TGRLSSSDPNLQNIP--ARTHE----------------------GK 698

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA  G  LV AD + IE R++A IA +   IKAF  G DI+  T A+     I+
Sbjct: 699 LIRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIKAFKLGYDIHKATAAEVLGKDIN 758

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           +V+ E+R+  K     L Y  GA     +++  GL  +
Sbjct: 759 EVTGEERSRAKATNFGLMYGMGA---HGLSAQTGLSFK 793


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 28/177 (15%)

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           LS  N  QLA D++  R  S  ++      LS  +  DGR+ G       + TGR S   
Sbjct: 557 LSEEN--QLASDILEYRTYSKLNSTYAEGLLS-WIREDGRIHGHFN-QMVTATGRISSTD 612

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P       I T+  +   R                   I   G   + AD + +
Sbjct: 613 PNLQNIP-------IRTEMGRRFRR-----------------VFIPKEGSIFIDADYSQV 648

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           E R+LA ++G++  I+A+ N +DI+  T ++ F+ P+ +V+ + R   K +   + Y
Sbjct: 649 ELRILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVY 705


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D 
Sbjct: 747 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 806

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 807 MPSEVRRRAKAINFGIIY 824


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G+KL+  D + IE R++A ++G+   + AF +G D++    A+ F   ID+
Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  +R   K +   L Y
Sbjct: 742 VTPNERRAAKAINFGLIY 759


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F+ P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFSLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 27/150 (18%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351
           + L+  + +DGR+ G       + TGR S      QN+P R E            L R  
Sbjct: 585 DGLANYICADGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR-- 629

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   I   G   V AD + IE R+LA  +G+   I A+   +DI+  
Sbjct: 630 -----------LIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRI 678

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+TP D+V++ QR   K +   + Y
Sbjct: 679 TASQVFHTPFDEVTELQRRNAKAVNFGIVY 708


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     I+ 
Sbjct: 693 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIES 752

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           V+ EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 753 VTTEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 809

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
             A S   +++  Y      PE               A+   + GTA +++KKA
Sbjct: 810 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 863


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  + +DGR+ G       + TGR S      QN+P R E            L R    
Sbjct: 587 LANYICADGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 629

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   I   G   V AD + IE R+LA  +G+   I A+   +DI+  T 
Sbjct: 630 ---------LIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITA 680

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+TP D+V++ QR   K +   + Y
Sbjct: 681 SQVFHTPFDEVTELQRRNAKAVNFGIVY 708


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 41/207 (19%)

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSD-GRLRGTLQFY 312
           +E  L  +  H+++ +L  D         G A LK    + L + ++ D GR+    Q  
Sbjct: 580 NEDVLAQLAVHADLPRLILDY-------RGMAKLKNTYADALPQMINPDTGRVHTHFQ-Q 631

Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             + TGR S      QN+P R E+   I                         R   +A 
Sbjct: 632 AVAATGRLSSNDPNLQNIPVRTEQGRRI-------------------------RQAFVAE 666

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  L+ AD + IE R+LA ++G+   ++AFA GEDI+  T A+ F+   + V    R  
Sbjct: 667 EGHWLLSADYSQIELRILAHLSGDARLLQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRA 726

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLD 458
            K +   L Y    +    +A   G+D
Sbjct: 727 AKAINFGLIY---GQTPYGLAQQLGID 750


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 132/314 (42%), Gaps = 60/314 (19%)

Query: 144 PYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           PY    A+  ++ WQLF     R ++ T+ +++ L      ER L  +   +   G ++D
Sbjct: 499 PYAAEDADITLRLWQLFKPQLHR-IQVTK-VYETL------ERPLVPVLAAMERSGIKVD 550

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            D + ++    AQ+   L+++I +L  G   +      L   LF     D + +  G   
Sbjct: 551 RDTLSRMSNAFAQKMAGLEDEIYELA-GRKFNVGSPKQLGEILF-----DEMGLEGGKKG 604

Query: 263 SILSHSNITQLAKDLI--------------LNRLASSGSAILKLNTLSEAVSSD-GRLRG 307
              +++    + +DL               L++L S+ +     + L + ++ D GR+  
Sbjct: 605 KTGAYATGADVLEDLATEHDLPGRILDWRQLSKLKSTYT-----DALQDHINKDTGRVHT 659

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +    GAS TGR +      QN+P   RSEE                         +R  
Sbjct: 660 SYSIAGAS-TGRLASTDPNLQNIPI--RSEE----------------------GRRIREA 694

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  GK LV  D + IE R+LA IA      +AF +G DI+  T ++ F  P+D+++ +
Sbjct: 695 FVAEEGKVLVALDYSQIELRILAHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPD 754

Query: 428 QRAIGKVMELALGY 441
            R   K +   + Y
Sbjct: 755 IRRQAKAINFGVIY 768


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
          Length = 605

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 426 VTSEQRRSAKAINFGLIY 443


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 63/256 (24%)

Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
           + KLN+     L + V+ DGR+    +    +RTGR S      QN+P R E  +E+   
Sbjct: 556 LTKLNSTYVAGLLKTVAPDGRIHTCFK-QTETRTGRISSTEPNMQNIPVRTELGKEM--- 611

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 R   +A  G+ L+ AD + IE R+LA +  +    +AF
Sbjct: 612 ----------------------RKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAF 649

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +G DI+ +T A+ F  P + V+ + R+  K +   + Y  GA    +++   G+ +++ 
Sbjct: 650 LSGADIHASTAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGA---YSLSQDIGVSVREA 706

Query: 463 SQNVKS------------TSTFEDWEQA----------------ESHHLWMQDQYPEFAV 494
            + +K             T   ED E+                 +SH+   Q      A+
Sbjct: 707 DRYIKRYLENFPRVEQFMTRIVEDAERTGFVSTLFGRRREVPELKSHNKIQQAAGRRIAM 766

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++K A 
Sbjct: 767 NTPIQGTAADIIKIAM 782


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    GA+ TGR +      QN+P   RSEE                        
Sbjct: 656 GRVHTSYSIAGAN-TGRLASTDPNLQNIPI--RSEE----------------------GR 690

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA  GK LV  D + IE R+LA +A      +AFA+G DI+  T ++ F+ P+D
Sbjct: 691 RIREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFADGMDIHAMTASEMFDVPLD 750

Query: 423 KVSKEQRAIGKVMELALGY 441
           +++ + R   K +   + Y
Sbjct: 751 QMTSDIRRQAKAINFGVIY 769


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A ++G+   + AFA   D++  T A+ F   +++
Sbjct: 667 IRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANLLAAFAEDADVHRATAAEVFGVALEE 726

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           V+  QR   K +   L Y  G   F  +A   G+  Q+ +Q 
Sbjct: 727 VTSSQRRSAKAINFGLIY--GMSAFG-LAKQLGIQ-QKLAQG 764


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     I+ 
Sbjct: 693 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIES 752

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475
           V+ EQR   K +   L Y  G   F  +A   G+   +        F +        ED 
Sbjct: 753 VTTEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 809

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509
             A S   +++  Y      PE               A+   + GTA +++KKA
Sbjct: 810 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 863


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 44/261 (16%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLV 254
           RG RI+          + +E  +L +++  +  G   IRSS+Q   L   LF   G+   
Sbjct: 543 RGIRINRAEFSGFLAEVQKELDRLTQEVYAVAGGQFNIRSSQQ---LGELLFGTLGLKAG 599

Query: 255 DMSEG----TLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             ++G    T +++L      H  I  + +   L +L S+      L  L      + R+
Sbjct: 600 SKTKGGQASTSQAVLEKLAGKHPVIDTILEYRKLEKLRST-----YLEPLPRLAQENDRI 654

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T     A+ TGR S      QN+P                     +  P+G     +R
Sbjct: 655 HTTFNQL-ATATGRLSSSQPNLQNIP---------------------VRGPMG---QRMR 689

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
            C  A+ G KLV AD + IE RVLA ++ +   I++F   EDI+  T    ++     V+
Sbjct: 690 RCFTAAPGNKLVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVT 749

Query: 426 KEQRAIGKVMELALGYQGGAK 446
            +QR   K +   L Y  G +
Sbjct: 750 PDQRRNAKTINFGLIYGMGPQ 770


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 426 VTSEQRRSAKAINFGLIY 443


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 426 VTSEQRRSAKAINFGLIY 443


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           TL +    DGR+R  L +   ++  + +     P ++ R  R    L QT+ A  R  + 
Sbjct: 608 TLEDLAQQDGRVRMILDYRERAKI-KSTYLDALPADIRRDGRIHTTLNQTVAATGRLSSS 666

Query: 354 ADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           A  L            VR+      G   +  D + IE R+LA ++ +   + AF +G D
Sbjct: 667 APNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGAD 726

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +  T A+ F  P+++V+ + R+  K +   + Y  G + F   +S
Sbjct: 727 FHAATAARVFGVPVEEVTPQLRSRAKAVNFGIVY--GQQAFGLASS 770


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 426 VTSEQRRSAKAINFGLIY 443


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 426 VTSEQRRSAKAINFGLIY 443


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 161/433 (37%), Gaps = 74/433 (17%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRW 93
           EPV L      +  P  L   L D +V  +A N+ ++ ++ + +      +G D     +
Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVLRSSGVRVAGVGFDTMLASY 503

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           +      R++GL   L    L    + + T + +GK  +        D  P D  R    
Sbjct: 504 VLDPG-RRSHGL-DLLALEQLGHTMTAYDTLVGKGKTQL------PFDVAPVDTAR---- 551

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-----------RGYRID 202
                  +Y   DV+ T  L  +L P+   E  L  L Q I              G  ID
Sbjct: 552 -------DYSCEDVDITMRLRAKLEPML-AEHALLSLFQEIEVPLVSVLAEMEWEGIAID 603

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           LD    L+   A ER ++++ I     G   +      LR  LF   G+  V     T  
Sbjct: 604 LDWFASLKARFAAERGRVEQAIYA-EAGEEFNINSNPKLRAILFEKLGLP-VKKKTATGP 661

Query: 263 SILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASR 316
           S    S + +LA++  +L  L      I KL     + L   V    R   T      S 
Sbjct: 662 ST-DASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRLHTSYSQTVSA 720

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R+E   +I                         R   +   G +
Sbjct: 721 TGRLSSHDPNLQNIPIRRELGRDI-------------------------RRGFVPREGWR 755

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE RVLA ++ +   + AF  G DI+  T A  F  P++ V+ E RA  K +
Sbjct: 756 LLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTI 815

Query: 436 ELALGYQGGAKVF 448
             A  Y  GA   
Sbjct: 816 NFATIYGQGAHAL 828


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 7   IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 66

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 67  VTGEQRRSAKAINFGLIY 84


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 131/307 (42%), Gaps = 46/307 (14%)

Query: 144 PYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           PY    A+  ++ WQLF     +  E    +++ L      ER L  +   +   G ++D
Sbjct: 504 PYAAEDADITLRLWQLFKPQLHQ--EQVTTVYETL------ERPLVPVLAQMERHGIKVD 555

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
            +++ ++    AQ+   L+ +I ++   D  + S +Q     +   L   ++L    +G 
Sbjct: 556 REVLSRMSNAFAQKMAGLESEIHEMAGADFNVGSPKQ-----LGEILFDKLELPGGKKGK 610

Query: 261 LKSILSHSNITQ-LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314
             +  + ++I + LA +  L  L      + KL     + L + ++++ R   T      
Sbjct: 611 TGAYATGADILEDLATEHALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTG 670

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR +      QN+P   R+EE                         +R   +A  G 
Sbjct: 671 ASTGRMASTDPNLQNIPV--RTEE----------------------GRRIREAFVAGEGN 706

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+  D + IE R+LA +AG D   +AFA G+DI+  T ++ F+ P+ +++ + R   K 
Sbjct: 707 VLLSLDYSQIELRILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKA 766

Query: 435 MELALGY 441
           +   + Y
Sbjct: 767 INFGVIY 773


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+ AD + IE R+LA IA      +AF  G DI+  T +  F  P+D+
Sbjct: 242 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 301

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 302 MTGDLRRRAKTINFGIIY--GISAFG-LADRLGIGREEASAFIK 342


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 426 VTSEQRRSAKAINFGLIY 443


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 24  IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 83

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 84  VTSEQRRSAKAINFGLIY 101


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 426 VTSEQRRSAKAINFGLIY 443


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++L   V +D R+  T     A+ TGR +      QN+P +                  
Sbjct: 608 VDSLIATVGADERIHTTFSQVAAA-TGRLASSDPNLQNIPARS----------------- 649

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
               P G+    +R       G   L+ AD + IE R++A ++G++  I+AF +GED++ 
Sbjct: 650 ----PDGM---RIRGAFTPGPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHR 702

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T  +  F TP+++VS E+R+  K     L Y
Sbjct: 703 TMASMVFGTPVEQVSGEERSRIKATSYGLAY 733


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           S D R+  +    G + TGR S      QN+P +  S      TIQ              
Sbjct: 623 SDDNRIHTSFLHTGTA-TGRLSSKNPNLQNIPTKSDS------TIQ-------------- 661

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   I  +G KLV  D + IE R+LA  + +   ++AF N  DI+  T  K F  
Sbjct: 662 ----IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFG- 716

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446
             ++ +KE+R I K +   L Y  G+K
Sbjct: 717 --EENAKEKRGIAKSINFGLLYGMGSK 741


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 61/281 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  +    G + TGR S      QN+P       
Sbjct: 616 LNKLKTT-----YVDTLPLLVDENSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 662

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   IA  GK L+  D + +E RVL  ++ ++  
Sbjct: 663 --VKTDDGIK---------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENL 705

Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN P  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 706 IEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 765

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     +TFE    E  E H                   +  ++ Q    
Sbjct: 766 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 825

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
           AV   + GTA E++KK        V  + KD  E  A ++Q
Sbjct: 826 AVNTVIQGTAAEVLKKVMVK----VYDILKD-KEDIALLLQ 861


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G  +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF+ PID
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 423 KVSKEQRAIGKVMELALGY----QGGAKVFKTMASHCGLDLQQF 462
           +V+ E R   K M   L Y     G A+  K       + ++Q+
Sbjct: 61  EVTPELRRRVKAMSYGLAYGLSAYGVAQQLKISTEEAKVQMEQY 104


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 64/267 (23%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           LK +L H + T+L +                +  L ++V+ DGR+  T Q   A+ TGR 
Sbjct: 597 LKFLLDHRDSTRLRQ---------------TVEGLLKSVADDGRIHTTFQQTIAA-TGRL 640

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E    I                         R+ ++    + L+ A
Sbjct: 641 SSTEPNLQNIPIRTEAGRRIR------------------------RAFVVGDGYETLLTA 676

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++ F      V+   R+  K M   L
Sbjct: 677 DYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAMSYGL 736

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF-AVKDKL 498
            Y           S  GL   Q + +VK  S              M+D +  F  V+  L
Sbjct: 737 AYG---------LSSFGLS-NQLNIDVKEASKL------------MEDYFTRFGGVRTYL 774

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLT 525
            G   E     + A   G  +   DLT
Sbjct: 775 AGVVDEARANGYTATIMGRRRYLPDLT 801


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 742 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 801

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 802 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 843


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D 
Sbjct: 5   IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 64

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 65  VTGEQRRSAKAINFGLIY 82


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 30/159 (18%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           ++ L +   +DGRL  +      + TGR S      QN+P R E    I           
Sbjct: 598 IDALPKLRGADGRLHTSFN-ETVTTTGRLSSSNPNLQNIPVRTEFGRHI----------- 645

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         R C I  + + L V AD + IE R+LA ++G+   I AF +G D +
Sbjct: 646 --------------RECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFH 691

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
             T A+ F  P+++V+ E R+  K +   + Y  G + F
Sbjct: 692 SATAARVFGVPVEEVTPELRSRAKAVNFGIVY--GQQAF 728


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VRS  +A  G K++ AD + IE R+L++ A  +     F  GEDI+ +T A+ F    D+
Sbjct: 646 VRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 705

Query: 424 VSKEQRAIGKVMELALGY 441
           V++E R   K +   + Y
Sbjct: 706 VTEENRRKAKAINFGIIY 723


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 124/310 (40%), Gaps = 58/310 (18%)

Query: 162 YCKRDVEATRELFKRLIPL-----SDGERDLWLLDQT----------INDRGYRIDLDLV 206
           YC  DV     + +RLIPL     ++     +LL+            + DRG RID   +
Sbjct: 519 YCGSDVH----VVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYL 574

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDL-----VDMSEG 259
            +L E +  E  +L+     L        S +Q   L   LF   G+++           
Sbjct: 575 AELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL---LFEKLGLNVKKSRKTKTGYS 631

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T  ++L          DLIL     +      ++ L   V++DGR+         + TGR
Sbjct: 632 TDAAVLEKLQGDHPIIDLILEHCTLAKLKSTYVDALPSLVAADGRIHTDFN-QAVTATGR 690

Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            S      QN+P R E S +I                         R   +   G  L  
Sbjct: 691 LSSSNPNLQNIPIRTEFSRQI-------------------------RKAFLPREGWLLAA 725

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA ++ E   ++A+  G+D++  T +  F+   ++++ E+R IGK++   
Sbjct: 726 ADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFG 783

Query: 439 LGYQGGAKVF 448
           + Y  GA+ F
Sbjct: 784 VIYGMGAQRF 793


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 645 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 704

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 705 VTSEQRRSAKAINFGLIY 722


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 124/310 (40%), Gaps = 58/310 (18%)

Query: 162 YCKRDVEATRELFKRLIPL-----SDGERDLWLLDQT----------INDRGYRIDLDLV 206
           YC  DV     + +RLIPL     ++     +LL+            + DRG RID   +
Sbjct: 508 YCGSDVH----VVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYL 563

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDL-----VDMSEG 259
            +L E +  E  +L+     L        S +Q   L   LF   G+++           
Sbjct: 564 AELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL---LFEKLGLNVKKSRKTKTGYS 620

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T  ++L          DLIL     +      ++ L   V++DGR+         + TGR
Sbjct: 621 TDAAVLEKLQGDHPIIDLILEHRTLAKLKSTYVDALPSLVAADGRIHTDFN-QAVTATGR 679

Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            S      QN+P R E S +I                         R   +   G  L  
Sbjct: 680 LSSSNPNLQNIPIRTEFSRQI-------------------------RKAFLPREGWLLAA 714

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA ++ E   ++A+  G+D++  T +  F+   ++++ E+R IGK++   
Sbjct: 715 ADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFG 772

Query: 439 LGYQGGAKVF 448
           + Y  GA+ F
Sbjct: 773 VIYGMGAQRF 782


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G +L+ AD + IE R+L  ++GE+  ++A+ANG+D++  T     +   D+
Sbjct: 742 IRKAFLPQEGWQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLLLDK--DE 799

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V+ ++R +GK +   + Y  GA+ F
Sbjct: 800 VTADERRLGKTINFGVIYGMGAQRF 824


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 677 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 736

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 737 VTSEQRRSAKAINFGLIY 754


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + ++ D GR+  +    GAS TGR +      QN+P   RSEE             
Sbjct: 649 DALQDHINKDTGRVHTSYAQTGAS-TGRMASTDPNLQNIPV--RSEE------------- 692

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  G  L+  D + IE R+LA +AG +   +AFA G+DI+  
Sbjct: 693 ---------GRRIREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAFAEGQDIHAL 743

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F  P+++++ E R   K +   + Y
Sbjct: 744 TASEMFGVPLEEMTPEIRRQAKAINFGVIY 773


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 752 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 811

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 812 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 853


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
           A  L      +R C +A  G ++   D    E RVLA ++ +   I+AF +  D+++ T 
Sbjct: 365 AQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLHLMTA 424

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
             AF   I K   E R   KV+     Y GGA   KT+A   GLD+
Sbjct: 425 RAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGA---KTVAEQTGLDM 466


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 736 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 795

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 796 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 837


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA NG  +V AD + IE R++A ++ +   +KAF    DI+  T A+     ID+
Sbjct: 657 IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQSLDIHSATAAEVLGIGIDE 716

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   K +   L Y
Sbjct: 717 VSSEQRRKAKAINFGLIY 734


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA     +V AD + IE R++A ++G+   + AF  G D++  T A+ F   +D
Sbjct: 668 AIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGLLTAFNEGLDVHAATAAEVFGVALD 727

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ +QR   K +   L Y
Sbjct: 728 EVTSDQRRSAKAINFGLIY 746


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + ++ D GR+  +    GAS TGR +      QN+P   RSEE             
Sbjct: 645 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE------------- 688

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IA      +AF +G DI+  
Sbjct: 689 ---------GRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGIDIHAL 739

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F  P+D+++ + R   K +   + Y
Sbjct: 740 TASEMFGVPLDEMTSDVRRQAKAINFGVIY 769


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 645 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 704

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 705 VTSEQRRSAKAINFGLIY 722


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310
           L D S+GTL      + ++Q      L     +  AI   ++ L E ++S  G++  +L 
Sbjct: 387 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 440

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             GA  +GR+S      Q +PR+ R                            V S  +A
Sbjct: 441 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 476

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
               K ++AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R 
Sbjct: 477 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 536

Query: 431 IGKVMELALGYQGGAKVFKTMAS 453
           + K +   L Y   A  F+  AS
Sbjct: 537 LAKAVNFGLIYGMSADRFRGYAS 559


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
           A  L      +R C +A  G ++   D    E RVLA ++ +   I+AF +  D+++ T 
Sbjct: 365 AQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLHLMTA 424

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
             AF   I K   E R   KV+     Y GGA   KT+A   GLD+
Sbjct: 425 RAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGA---KTVAEQTGLDM 466


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 61/281 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  +    G + TGR S      QN+P       
Sbjct: 616 LNKLKTT-----YVDTLPLLVDENSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 662

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   IA  GK L+  D + +E RVL  ++ ++  
Sbjct: 663 --VKTDDGIK---------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENL 705

Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN P  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 706 IEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 765

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     +TFE    E  E H                   +  ++ Q    
Sbjct: 766 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 825

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
           AV   + GTA E++KK        V  + KD  E  A ++Q
Sbjct: 826 AVNTVIQGTAAEVLKKVMVK----VYDILKD-KEDIALLLQ 861


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  LV  D + IE R+LA IA  D   +AF +G+DI+  T ++ F+ P+D+
Sbjct: 698 IREAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDGQDIHAMTASEMFDVPLDE 757

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 758 MTPEIRRQAKAINFGVIY 775


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR+  IA  G  L+  D + IE R++A +A ++  + AF  G+DI+  T A  +  P++ 
Sbjct: 695 VRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAMLAAFRAGQDIHAATAAAIYGVPLEA 754

Query: 424 VSKEQRAIGKVMELALGY 441
           V++E R   K +   L Y
Sbjct: 755 VTREMRRHAKAINFGLIY 772


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%)

Query: 282 LASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSE 337
           L   G A LK NT ++ +   S D   R    ++ A + TGR S      QN+P      
Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDATHRVHTSYHQALTATGRLSSTDPNLQNIP------ 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          I  P+G     +R   IA  G+ L+ AD + IE R++A  + +D 
Sbjct: 676 ---------------IRTPIG---RQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDA 717

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + AF  G+D++  T A+     I+ V+ +QR   K +   L Y
Sbjct: 718 LVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 761


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G KL+ AD + IE R+L+ IA  D   +AF N EDI+  T  + FN    +
Sbjct: 635 IRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIFNLQKHE 694

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 695 LTSEHRRKAKAINFGIIY 712


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVELEG 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+++ R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTQDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L + +  DG++  T+    A++TGR S      QN+  R E+ +EI              
Sbjct: 593 LKKYIQQDGKIH-TIYNQSATQTGRLSSSEPNLQNISVRDEQGKEI-------------- 637

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      R   +  NG  L+ +D   IE R+LA +A E   I+AF  G DI+  T 
Sbjct: 638 -----------RKAFLPENGCVLISSDYHQIELRMLAHMANETSLIEAFKEGIDIHTKTA 686

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
              F+ P D+++ + R   K +   + Y
Sbjct: 687 MDVFHKPQDEITAQDRRSAKTVNFGIVY 714


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++VS DGR+  T     A+ TGR S      QN+P   R+EE           G 
Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 656

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           R+ ++    + L+ AD + IE R++A ++ +D  I+AF +G D +  
Sbjct: 657 RIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 706

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T +  F   +  V+ +QR   K M   L Y
Sbjct: 707 TASSVFTVEVGDVTADQRRKIKAMNYGLAY 736


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L +AV+ +GR+  T +   AS TGR S      QN+P   R+E              
Sbjct: 588 IEGLIKAVADNGRIHTTFKQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 630

Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   A   +RS      G + L+ AD + IE RV+A ++ +   I+A+  GED++ 
Sbjct: 631 --------AGRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLHN 682

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F+ PID+V+ E R   K M   L Y
Sbjct: 683 FVGSRVFDVPIDQVTPELRRRVKAMSYGLVY 713


>gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 321

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 82  IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 141

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 142 VTTDMRRSAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 176


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA+   KL+  D + IE R+LA I+ +    KAFA   DI+  T A+ F  P+  
Sbjct: 629 VRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKD 688

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+ E R   K +   + Y  GA
Sbjct: 689 VTAEHRRSAKAVNFGIAYGQGA 710


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +       V AD + IE RVLA +AG++  I+A+   +DI+  T ++ F+TP D
Sbjct: 637 LIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFD 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+  QR+  K +   + Y
Sbjct: 697 EVTPAQRSNAKAVNFGIVY 715


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +  +G  KLV AD + IE RVLA I  ++  I AF N EDI+ +T +K F  P +
Sbjct: 657 IRKAFVPCDGNYKLVDADYSQIELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNE 716

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
           +V+   R+  K +   + Y  G
Sbjct: 717 EVTSALRSKAKAVNFGIVYGIG 738


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 628 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 675

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 676 ------------FVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVAS 723

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F     +V  E R   K M   L Y
Sbjct: 724 QVFGVATSEVDAEMRRKIKAMSYGLAY 750


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 27/152 (17%)

Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++TL + V+   GR+  +    G + TGR S      QNLP   +SEE            
Sbjct: 608 IDTLPKLVNPKTGRIHASFHQTGTA-TGRLSSSDPNLQNLPT--KSEE------------ 652

Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R  I+  +    +V AD + IE R+LA ++G++  +KAF  G D++
Sbjct: 653 ----------GKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVKAFEEGIDVH 702

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             T ++ +N   ++V++E R +GK++  ++ Y
Sbjct: 703 TLTASRIYNVKPEEVNEEMRRVGKMVNFSIIY 734


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 571 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 630

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 631 VTSEQRRSAKAINFGLIY 648


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  + +DGR+ G       + TGR S      QN+P R E            L R    
Sbjct: 588 LAVYIGADGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +   G   + AD + IE R+LA  +G++  I+A+ +  DI+  T 
Sbjct: 631 ---------LIRKVFVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTA 681

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+TP ++V++ QR   K +   + Y
Sbjct: 682 SQVFHTPFEEVTELQRRNAKAVNFGIVY 709


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 365 RSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R C++    G   V AD + IE RVLA ++GE+  I+AF  G D++  T +  +      
Sbjct: 600 RRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWIYGVDPQA 659

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           VS EQR   KV+   L Y  GA
Sbjct: 660 VSPEQRRFAKVVNFGLLYGMGA 681


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310
           L D S+GTL      + ++Q      L     +  AI   ++ L E ++S  G++  +L 
Sbjct: 387 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 440

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             GA  +GR+S      Q +PR+ R                            V S  +A
Sbjct: 441 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 476

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
               K ++AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R 
Sbjct: 477 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 536

Query: 431 IGKVMELALGYQGGAKVFKTMAS 453
           + K +   L Y   A  F+  AS
Sbjct: 537 LAKAVNFGLIYGMSADRFRGYAS 559


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I   G     AD + IE RV+A ++ +   I+AF +G DI+  T AK +  PI++
Sbjct: 681 IRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIEAFMHGYDIHAATAAKIYKKPIEE 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V++++R   K     + Y
Sbjct: 741 VTRDERNKAKRANFGIIY 758


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 192/470 (40%), Gaps = 78/470 (16%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           +S + + L +YL D TV  V HN+ F+  +L +  + +   +   +    +   N    +
Sbjct: 184 RSYVLNGLKRYLTDPTVGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMKILNENEPSVA 243

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD-----CTRANHVQAWQLFGEYC 163
           LKN  LA  + +      E       F K      P D       +  H+  W+L+ ++ 
Sbjct: 244 LKN--LATRYGKFFGFDGESHTFEDLFGKACFADVPLDMALIYAAKDTHL-TWELY-KWQ 299

Query: 164 KRDVEATRELFKRLIPLSDGERDLWL-LDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              +    +L K    L +   D+ + ++QT    G+ +D     +  E +  E  ++++
Sbjct: 300 MEHLTKREDLLKLYRELENPLVDICVEMEQT----GFAVDTAFAQEYGEELKGELAEVEK 355

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKSILS-HSNITQL 273
            +V     I  +S    A  +Y       D + + +G        TLK +   H  I  L
Sbjct: 356 TLVAHFGEINFNSPAQLAEVLY-------DRLGLPQGKERSTDVKTLKGLKGRHPGIEPL 408

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            K   L +L  +      +  L   + +DGR+ G+     A+ TGR++      QNLP +
Sbjct: 409 LKYRELTKLLGT-----YVEALPHQLKADGRIHGSFNQV-ATVTGRFASREPNLQNLPPR 462

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                          R  I+A  G  L+  D + IE R+LA ++
Sbjct: 463 ------------------------------ARRLIVAPKGWLLLGIDFSQIEPRILAHMS 492

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTM 451
           G+    + +  GED+Y T  A+ F  P+ +     + R + K+  LA+ Y  G  +F T+
Sbjct: 493 GDPHFREPYLKGEDLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMY--GTSMF-TL 549

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
           +   G+ +++  + ++       +++    + +++D + EF  K++ + T
Sbjct: 550 SEQLGISVEEAHRFIEGF-----YDEYPDVYAFIKDTW-EFVKKNEYVAT 593


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A +A +   + AFA G+DI+  T A+ F   ++K
Sbjct: 688 IRQAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAFAAGKDIHRATAAEVFGMSLEK 747

Query: 424 VSKEQRAIGKVMELALGY 441
           V+++QR   K +   L Y
Sbjct: 748 VTQDQRRSAKAINFGLIY 765


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   ID
Sbjct: 610 LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEVFGVDID 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 620 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 667

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 668 ------------FVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVAS 715

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F     +V  E R   K M   L Y
Sbjct: 716 QVFGVATSEVDAEMRRKIKAMSYGLAY 742


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 22/167 (13%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G   V+AD + IE R+ A   GE   I+AF  G D++  T +       + 
Sbjct: 339 LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRYTASILLGKREED 398

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ-QFSQNVKST-----STFEDWE- 476
           ++KE+R + K +   L Y   AK     A+  G+DL  + +Q ++         F DW  
Sbjct: 399 ITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFSYFEGFRDWHN 458

Query: 477 ----------QAESHHL----WMQDQYPEFAVKDKLIGTACELVKKA 509
                     ++  H L    ++   +P+ AV   + GT  +L+K A
Sbjct: 459 RVKEELKKTGKSSGHTLLGRSYVAHTFPD-AVNYPIQGTGADLLKLA 504


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++VS DGR+  T     A+ TGR S      QN+P   R+EE           G 
Sbjct: 621 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 666

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           R+ ++    + L+ AD + IE R++A ++ +D  I+AF +G D +  
Sbjct: 667 RIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 716

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T +  F   +  V+ +QR   K M   L Y
Sbjct: 717 TASSVFTVEVGDVTADQRRKIKAMNYGLAY 746


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 32/159 (20%)

Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
           + KLN+     L+  +  DGR+ G       + TGR S      QN+P R E   EI   
Sbjct: 626 LTKLNSTYAEGLAAYIGEDGRIHGKFN-QTITATGRISSTEPNLQNIPVRMELGREI--- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 R   +   G   V AD + IE R+LA ++G++  I+A+
Sbjct: 682 ----------------------RKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAY 719

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + +DI+  T ++ F+ P+ +V+  QR   K +   + Y
Sbjct: 720 RSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNFGIVY 758


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310
           L D S+GTL      + ++Q      L     +  AI   ++ L E ++S  G++  +L 
Sbjct: 387 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 440

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             GA  +GR+S      Q +PR+ R                            V S  +A
Sbjct: 441 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 476

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
               K ++AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R 
Sbjct: 477 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 536

Query: 431 IGKVMELALGYQGGAKVFKTMAS 453
           + K +   L Y   A  F+  AS
Sbjct: 537 LAKAVNFGLIYGMSADRFRGYAS 559


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  +  DGR+ G       + TGR S      QN+P R E            L R    
Sbjct: 589 LAGYIKDDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 631

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   I  +G   V AD + IE R+LA  +G++  I A+    DI+  T 
Sbjct: 632 ---------LIRKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITA 682

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+TP ++V+  QR   K +   + Y
Sbjct: 683 SQVFHTPFEEVTDLQRRNAKAVNFGIVY 710


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 599 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 646

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 647 ------------FVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVAS 694

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F     +V  E R   K M   L Y
Sbjct: 695 QVFGVATSEVDAEMRRKIKAMSYGLAY 721


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ ++  I AFA G DI+  T A+    P++ 
Sbjct: 681 IRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLIDAFARGLDIHRATAAEVMGVPLED 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+  +Q
Sbjct: 741 VTSDMRRSAKAVNFGLIY--GMSAFG-LARQLGISREQ 775


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+ AD + IE R+LA IA      +AF  G DI+  T +  F  P+D+
Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 863

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 46/78 (58%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+ L+ AD + IE R++A ++ ++  + AF +G+D++  T A+    P+++
Sbjct: 683 IRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIPLEE 742

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 743 VTNDQRRQAKAVNFGLLY 760


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 42/259 (16%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF------- 246
           + D G  +D+D++ +  + IAQ+    ++    L D    +      L + LF       
Sbjct: 493 MEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPKQLSVVLFDKLELPK 552

Query: 247 ---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
                TG         TL +   H  + QL       +L S+   ++K       V  DG
Sbjct: 553 TKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKSTIEGLIK------TVHDDG 606

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T     AS TGR S      QN+P   R+E                      A   
Sbjct: 607 RIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE----------------------AGRR 641

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +RS     +G + L+ AD + IE RV+A ++ +   I+A+  GED++    ++ F+ PID
Sbjct: 642 IRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLHNFVGSRVFDVPID 701

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R   K M   L Y
Sbjct: 702 DVTPELRRRVKAMSYGLVY 720


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L +L ++V+ DGR+  T      + TGR S      QN+P   RSEE             
Sbjct: 664 LESLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIPI--RSEE------------- 707

Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       VR   +   G + L+ AD + IE R++A ++G+   I+A+ +GED++ 
Sbjct: 708 ---------GRRVRGIFVVGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHR 758

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              +  F+ P ++V+   R+  K M   L Y
Sbjct: 759 FVGSNIFHVPAEEVTSAMRSKVKAMSYGLAY 789


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE R++A  +G+     AFANGEDI+  T A      ++ 
Sbjct: 676 IRKAFIAEEGHTLLAADYSQIELRLMAHFSGDAALCAAFANGEDIHAATAAAVNGIALED 735

Query: 424 VSKEQRAIGKVMELALGY 441
           VS E R   K +   + Y
Sbjct: 736 VSGEMRRRAKAINFGILY 753


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 28/166 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            A+     I +V+  +R   K +   L Y  G   F  +A   G+D
Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY--GMSAFG-LAKQIGVD 799


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA +G  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +K F    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA +G  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +K F    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 35/176 (19%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IAS G  L+ AD + IE R+LA IA      +AFA G+DI+  T ++ F   I++
Sbjct: 725 IRTAFIASEGCLLLSADYSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMFGVAIER 784

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-- 481
           +S + R   K +   + Y  G   F  +A+  G+  ++ S  ++    FE +   +S+  
Sbjct: 785 MSSDVRRRAKAINFGIIY--GISAFG-LANQLGISREEASHYIR--VYFERFPGIQSYME 839

Query: 482 --------HLWMQD------QYPEFAVKDKLI--------------GTACELVKKA 509
                   H +++        YPE   +D+ +              G+A +++++A
Sbjct: 840 ATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNERAAINAPIQGSAADIIRRA 895


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 453 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 512

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 513 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 554


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 24/128 (18%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR S      QN+P                     +  PLG     +R   +A  G
Sbjct: 566 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEEG 601

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            KLVV D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    R   K
Sbjct: 602 WKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAK 661

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 662 TINFGVLY 669


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA +G  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +K F    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA +G  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +K F    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS  IA++G  L+ AD + I+ RVLA  + +   I AF  G+DI+  T A+ FN   + 
Sbjct: 655 IRSAFIAADGCLLLAADYSQIDLRVLAHYSQDRELIAAFQGGQDIHRRTAAEIFNVSPEL 714

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R + K +   + Y
Sbjct: 715 VTAEMRRVAKTINFGIVY 732


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 445 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 504

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 505 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 546


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 28/166 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            A+     I +V+  +R   K +   L Y  G   F  +A   G+D
Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY--GMSAFG-LAKQIGVD 802


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 120/289 (41%), Gaps = 49/289 (16%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTIND-----------RGYRIDLDLVLKLQELIAQERKK 219
           RE+  RL    +GE  LW L + +             RG ++D+D +L L + +A E ++
Sbjct: 422 REMSDRL----EGEERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELER 477

Query: 220 LDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL--AKD 276
           L+ +I +L       +SR    L   L+   G+     +  T K   S S +  L  A  
Sbjct: 478 LEAEIHRLAGHPFNLNSRDQ--LETVLYDELGLAAGRRTAKTGKRSTSASVLETLRGAHP 535

Query: 277 LILNRLASSGSAILK---LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           ++   L     A LK   L+ L + V    GRL       G + TGR S      QN+P 
Sbjct: 536 IVEKILQYRELAKLKGTYLDPLPKLVHPRTGRLHTRFHQTGTA-TGRLSSSDPNLQNIP- 593

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                 I T+  + + +G                  +A  G  LVVAD + IE RVLA +
Sbjct: 594 ------IRTEIGRRIRKG-----------------FVAGEGYLLVVADYSQIELRVLAHL 630

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +G++  I+ F  G DI+  T A  F     +V   +R   K +   + Y
Sbjct: 631 SGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLY 679


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     I +
Sbjct: 687 IRQAFVAPHGYKIMAIDYSQIELRIMAHLSGDRALLEAFQQGKDIHAATAAEILGVDISQ 746

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 747 VTAEQRRRAKAVNFGLIY 764


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 125/306 (40%), Gaps = 51/306 (16%)

Query: 159 FGEYCKRDVEA----TRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDL 203
           +G   K D  A    +  L++ L P +++ ER LWL  +           +   G R+D+
Sbjct: 392 YGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLAQVLAHMEATGVRLDV 451

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLK 262
             +  L + +A E ++L+ ++ +L       +SR    L   LF   G+  +  +E T K
Sbjct: 452 PYLEALSQEVAFELERLEAEVHRLAGHPFNLNSRDQ--LERVLFDELGLPPIGKTEKTGK 509

Query: 263 SILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGAS 315
              S + +  L +   I+ R+      ++KL +     L   V    GRL        A+
Sbjct: 510 RSTSAAVLELLREAHPIVGRILEY-RELMKLKSTYIDPLPRLVHPKTGRLHTRFN-QTAT 567

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                     +  PLG     +R   IA  G  
Sbjct: 568 ATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFIAEEGHL 603

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LV  D + IE RVLA ++G++  I+ F  G+DI+  T A  F  P + V    R   K +
Sbjct: 604 LVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGVDGAMRRAAKTV 663

Query: 436 ELALGY 441
              + Y
Sbjct: 664 NFGVLY 669


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G  +V  D + IE R+LA IAG D   +AF +G DI+  T ++ F+ P+D+
Sbjct: 696 IREAFVAAPGNVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQ 755

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 756 MTPDIRRQAKAINFGVIY 773


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 253  LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310
            L D S+GTL      + ++Q      L     +  AI   ++ L E ++S  G++  +L 
Sbjct: 2262 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 2315

Query: 311  FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              GA  +GR+S      Q +PR+ R                            V S  +A
Sbjct: 2316 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 2351

Query: 371  SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                K ++AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R 
Sbjct: 2352 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 2411

Query: 431  IGKVMELALGYQGGAKVFKTMAS 453
            + K +   L Y   A  F+  AS
Sbjct: 2412 LAKAVNFGLIYGMSADRFRGYAS 2434


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++ +   + AFAN EDI+  T A+ F      
Sbjct: 28  IREAFVAPPGSHIVSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAA 87

Query: 424 VSKEQRAIGKVMELALGY 441
           V  EQR   KV+   L Y
Sbjct: 88  VDSEQRRYAKVINFGLIY 105


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G+KL+  D + IE R++A ++G+   + AF +G D++    A+ F   ID+
Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  +R   K +   L Y
Sbjct: 742 VTLNERRAAKAINFGLIY 759


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-ANGEDIYVTTYAKAFN- 418
            S C+R+  +A NGK L+ AD + IE R+LA ++G++  I AF ++G DI+ +  A  ++ 
Sbjct: 1445 SFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSE 1504

Query: 419  -TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
             + ID V+ +QR   K     + Y  GA+      +    D Q
Sbjct: 1505 ISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTSETDAQ 1547


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           S   + QLA+D  +  L      + KL     + L + + ++GR+  +    G + TGR 
Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                     I  P G     +R   IA +G  +V AD
Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   +K F    DI+  T A+     ID+VS EQR   K +   L 
Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733

Query: 441 Y 441
           Y
Sbjct: 734 Y 734


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 618 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F    D V  E R   K M   L Y
Sbjct: 714 QVFGVEKDAVDAEMRRKIKAMSYGLAY 740


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V S+ R+  +    G + TGR S      QN+P       
Sbjct: 621 LNKLKTT-----YVDTLPNLVDSNSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 667

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 668 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 710

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  D V++EQR I K++  ++ Y     G AK  K    
Sbjct: 711 IEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVK 770

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     +TFE    E  E H                   +  ++ Q    
Sbjct: 771 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERM 830

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 831 AVNTVIQGTAAEVLKKVM 848


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 32/157 (20%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344
           KLN+     L   +  DGR+         + TGR S      QN+P R E   EI     
Sbjct: 585 KLNSTYADGLGTYIKEDGRIHSRFN-QTITATGRISSTEPNLQNIPIRMELGREI----- 638

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               R   +  NG   + AD + IE RVLA ++G++  I+A+  
Sbjct: 639 --------------------RKVFVPRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKT 678

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +DI+  T ++ F+ P+++V+  QR   K +   + Y
Sbjct: 679 AQDIHAITASQVFHIPLNEVTPLQRRNAKAVNFGIVY 715


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++L  +V+ DGR+  T     A+ TGR +      QN+P   RS + +           
Sbjct: 648 VDSLIASVADDGRIHTTFSQVAAA-TGRLASADPNLQNIP--ARSADGMR---------- 694

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   +A  G + L+ AD + IE R++A ++ ++  I AF +GED++ 
Sbjct: 695 ------------IRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHR 742

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T  +  F TP+ +V+ +QR+  K     L Y
Sbjct: 743 TMASMVFGTPVAEVTAQQRSRIKATSYGLAY 773


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 121/304 (39%), Gaps = 58/304 (19%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           Y   D + T +L  +L+PL + E++L  + +       +I++ LV  L ++   E + + 
Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMQM---EMRGVL 520

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265
            D   L    I  S +   L    + + G +    S   L++IL                
Sbjct: 521 VDTAMLQAQSIELSGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580

Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
             +  N+ Q LA D  L ++     ++ KL T     L   V    R   T      + T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P   R+EE                         +R   IA  G ++V
Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E R++A I+ +   IKAF    DI+  T A+ F   +++V+ EQR   K +  
Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGY 441
            L Y
Sbjct: 737 GLLY 740


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 27/150 (18%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351
           + LS  +S DGR+ G       + TGR S      QN+P R E            L R  
Sbjct: 586 DGLSNYISGDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR-- 630

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   I  +G   + AD + IE RVLA  +G++  I A+   +DI+  
Sbjct: 631 -----------LIRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRI 679

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F+ P  +V+  QR   K +   + Y
Sbjct: 680 TASQVFHVPFGEVTDLQRRNAKAVNFGIVY 709


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 776


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + ++ DGR+  T     A+ TGR S      QN+P          +T++         
Sbjct: 616 LVKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIP---------IRTVEGRR------ 659

Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G + L+ AD + IE R++A ++G++  I AF +G D + TT 
Sbjct: 660 ---------IRQGFVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDFHKTTA 710

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A+ F+   ++V+ E RA  K M   L Y
Sbjct: 711 ARVFDIEPEQVTGEMRAKIKAMNYGLAY 738


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 52/301 (17%)

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIA 214
            D+   REL   L P+ D  R  WL+             +   G +ID   +  +++  A
Sbjct: 516 HDLAVIRELAVTLGPVIDERRQYWLMRAIELPVSRVLHGMEQSGAKIDRSRLTDMRDRFA 575

Query: 215 QERKKLDEDIVKLTDGII--RSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSI 264
            + ++  E   +   G I  +S +Q   L+  LF+  G+     ++          L+++
Sbjct: 576 ADARQAQEMAWQYAGGEINLQSPKQ---LQKVLFVDMGLKPTKRTKNGSYTTNAAALQNL 632

Query: 265 LSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
             HS   + A   +   L    +  LK  + TL +A + +D R+  T +   A+ TGR S
Sbjct: 633 YIHSVDNEQANGFLGALLRHRETNKLKQIVQTLIDATNKADERIHTTFEQTVAA-TGRLS 691

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380
                 QN+P +            A+ R              +RS  +   G + L+  D
Sbjct: 692 SVDPNLQNIPNR-----------NAVGR-------------EIRSVFVPGEGYEALMSCD 727

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + +E R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L 
Sbjct: 728 YSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYGVPVDQITGDQRSHVKAMSYGLA 787

Query: 441 Y 441
           Y
Sbjct: 788 Y 788


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +++  DGR+  T Q   A+ TGR S      QN+P       I T++ + + R   + 
Sbjct: 620 LIKSIGDDGRIHTTYQQTIAA-TGRLSSTDPNLQNIP-------IRTESGRRIRRVFVV- 670

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
              G   DC+ S            AD + IE RV+A ++G++  I+AF +GED++    +
Sbjct: 671 ---GEGYDCLMS------------ADYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGS 715

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F     +V+ E RA  K M   L Y
Sbjct: 716 RVFGVEPSEVTSEMRAKVKAMSYGLAY 742


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 119/312 (38%), Gaps = 64/312 (20%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-----------RGYRIDLDL 205
            L   Y   D E T +    + P  D E  L  L +TI              G  +D D+
Sbjct: 475 HLAAPYACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDV 534

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           +  +    ++ R +L E+I +L  G + +   T  L   LF   GI     ++    + +
Sbjct: 535 LSTMSADFSKRRARLVEEIHELA-GEVFNVNSTQQLGHILFEKMGIKGGKRTKSGFSTDV 593

Query: 266 SHSNITQLAKDLILNRLASSGSAI----LKLNTLSEAVSS------------DGRLRGTL 309
           S           +L++LA  G  I    L   +L++  S+             GR+  + 
Sbjct: 594 S-----------VLSKLADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTGRVHTSY 642

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P   R+EE                         +R+  I
Sbjct: 643 N-QAVTLTGRLSSSDPNLQNIPI--RTEE----------------------GRAIRTAFI 677

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G  L+ AD + IE RVLA +       +AF  G DI+  T A+ F  P+ +V+ E R
Sbjct: 678 APAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHR 737

Query: 430 AIGKVMELALGY 441
            + K +   L Y
Sbjct: 738 RMAKTINFGLVY 749


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   ID
Sbjct: 610 LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEIFGVDID 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 161/412 (39%), Gaps = 87/412 (21%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L DE ++ +  N  ++  + K+  GID+ P    +  S  A   GL     +A      S
Sbjct: 417 LEDEAILKIGQNMKYDAKILKRC-GIDVAPCDDTMLIS-YALNAGLHQHGMDALADRYLS 474

Query: 120 EHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                ++E    GKA+I  F K  ID      TR            Y   D + T  L++
Sbjct: 475 HTCIPIKELLGTGKAMIT-FDKVPIDK----ATR------------YAAEDADVTLRLWQ 517

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              ER L  +   +   G ++D D + ++    AQ+   L+ +I 
Sbjct: 518 VLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLSRMSSAFAQKMGALEAEIH 577

Query: 226 KLTDG--IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI----- 278
           +L      + S +Q   L   LF     D + M  G      +++    + +DL      
Sbjct: 578 ELAGERFNVGSPKQ---LGEILF-----DKMGMEGGKKGKTGAYATGADVLEDLATLHEL 629

Query: 279 ---------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                    L++L S+ +  L+ +   E     GR+  + Q  GA+ TGR +      QN
Sbjct: 630 PARVLDWRQLSKLKSTYTDSLQTHIHPET----GRVHTSYQQTGAN-TGRLASTDPNLQN 684

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P   RSEE                         +R   IA  GK L+  D + IE R+L
Sbjct: 685 IPV--RSEE----------------------GRRIREAFIAEEGKVLLSLDYSQIELRIL 720

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A IA      +AF  G+DI+  T ++ F  P+++++ E R   K +   + Y
Sbjct: 721 AHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIY 772


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE R++A ++ ++  ++AF  G+D++  T A+ F     +
Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLMRAFREGQDVHRATAAEVFGVTPLE 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR   KV+   L Y  G   F  +AS+ G+
Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 787


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE R+LA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 618 LIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F    D V  E R   K M   L Y
Sbjct: 714 QVFGVEKDAVDAEMRRKIKAMSYGLAY 740


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 23/165 (13%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L +A++ DGR+  T Q   A+ TGR S      QN+P R E+ + I    +     GE  
Sbjct: 671 LRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNLQNIPVRTEQGQRIRDVFVV----GEDT 725

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             P     +C            L+ AD + IE R++A ++G++  I+AF  GED++    
Sbjct: 726 QGPF----EC------------LMTADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVG 769

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++ F+   + V+ + R+  K M   L Y G +    +   H G+D
Sbjct: 770 SRVFDVAPEDVTPQMRSKVKAMSYGLVY-GLSSYGLSQQLHIGVD 813


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 130/316 (41%), Gaps = 68/316 (21%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLW------LLDQT----------INDRGYRIDLDL 205
           YC  DV  T     RL PL  G+ +        LLDQ           +   G RID D 
Sbjct: 536 YCGMDVHVTY----RLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDY 591

Query: 206 VLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----- 258
           + +L   +    ++L+ D  +   TD  + S +Q   L   LF   G+D     +     
Sbjct: 592 LGELSRELKATLERLESDAKEAAGTDFNLASPKQ---LGELLFDTLGLDRKKSRKTKTGW 648

Query: 259 GTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
            T  ++L     +H  +  + +   L++L S+   +  L  L EA +  GR+        
Sbjct: 649 STDATVLEKLEDAHPVVPLVLEHRTLSKLKST--YVDALPALMEAET--GRVHTDFN-QA 703

Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            + TGR S      QN+P R E S  I                         R   +   
Sbjct: 704 VTATGRLSSSNPNLQNIPVRTEFSRRI-------------------------RKAFLPEA 738

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  L+ AD + IE R+LA ++GE+  +KA+ +G+D++  T    F+   D+V+ ++R +G
Sbjct: 739 GWTLISADYSQIELRILAHLSGEEVLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLG 796

Query: 433 KVMELALGYQGGAKVF 448
           K +   + Y  G + F
Sbjct: 797 KTINFGVIYGMGVQRF 812


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 154/422 (36%), Gaps = 127/422 (30%)

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS---------HSNITQLAKDLILNRL 282
           IRSS+Q   L + LF   GI     +   L+S  +         H  +  + +  +L +L
Sbjct: 541 IRSSQQ---LAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKL 597

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S+      L  L + V  DGRL        ++ TGR S      QN+P +         
Sbjct: 598 RST-----YLEPLPKMVGEDGRLHTHFNQL-STATGRLSSSQPNLQNIPIR--------- 642

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                          G+    +R+C  A+ G  L  AD + IE RVLA  + +   I AF
Sbjct: 643 ---------------GVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAF 687

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            + EDI+  T A   +  I  V+ ++R   K +   L Y              G+ +Q+ 
Sbjct: 688 RHDEDIHARTAALIHDKDISAVTPDERRGAKTINFGLIY--------------GMGVQKL 733

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           ++ ++   T E  E  E +          FA    L      +VK A             
Sbjct: 734 ARELQIKQT-EAQEFTEKY----------FAKMATLKAYYDTVVKDAE------------ 770

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
             T GF        +++ RR     RL+   H R+  +   + R+ V           NT
Sbjct: 771 --THGFVT------TLAGRR-----RLLPELHSRNNQLSAQARRQAV-----------NT 806

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                             ++Q  + DI+   M  A K+      G  ++L VHDE++ E 
Sbjct: 807 ------------------VIQGSAADIIKMAMVQAHKDKRLRELGAQLILQVHDELIIEA 848

Query: 637 PD 638
           P+
Sbjct: 849 PE 850


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 583 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 642

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 643 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 677


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 35/177 (19%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  LV AD + IE R+LA IA       AF  G DI+  T ++ FN P+  
Sbjct: 757 IRRAFVAEEGNLLVSADYSQIELRLLAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKD 816

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------E 476
           +  E R   K +   + Y  G   F  +A+  G+  ++  Q +K    FE +       E
Sbjct: 817 MPAEVRRRAKAINFGIIY--GISAFG-LANQLGIPREEAGQYIK--RYFERFPGIRDYME 871

Query: 477 QAES---HHLWMQD------QYPEFAVKD--------------KLIGTACELVKKAW 510
           + ++    H +++        YPE A K+              +L GTA +++++A 
Sbjct: 872 ETKTFCREHGYVETLFGRRCHYPEIAAKNPSIRAFNERAAINARLQGTAADIIRRAM 928


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 593 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 652

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 653 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 687


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R+LA +A E   I+AF  G DI+  T +  F+   + 
Sbjct: 448 IRKAFVAQKGYKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQED 507

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R + K +   + Y
Sbjct: 508 VTPDMRRVAKTVNFGIVY 525


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V S+ R+  +    G + TGR S      QN+P       
Sbjct: 621 LNKLKTT-----YVDTLPNLVDSNSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 667

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 668 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 710

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  D V++EQR I K++  ++ Y     G AK  K    
Sbjct: 711 IEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVK 770

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     +TFE    E  E H                   +  ++ Q    
Sbjct: 771 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERM 830

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 831 AVNTVIQGTAAEVLKKVM 848


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F TPI+ 
Sbjct: 758 IRQAFIAEKGQKLISADYSQIELRVLAHMADIPQLKKAFEDGLDIHAMTASEMFGTPIEG 817

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    R   K +   + Y  G   F  +A+  G+   +    +K+
Sbjct: 818 MDPMVRRQAKAINFGIIY--GISAFG-LANQLGISRGEAGDYIKT 859


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G KL+ AD + IE R+LA +A      +AFA+G DI+  T ++ F  P++ 
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+   +  ++  Q +++
Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%)

Query: 282 LASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSE 337
           L   G A LK NT ++ +   S D   R    ++ A + TGR S      QN+P      
Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQNIP------ 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          I  P+G     +R   IA  G+ L+ AD + IE R++A  + +D 
Sbjct: 676 ---------------IRTPIGRQ---IRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDA 717

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + AF  G+D++  T A+     I+ V+ +QR   K +   L Y
Sbjct: 718 LVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%)

Query: 282 LASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSE 337
           L   G A LK NT ++ +   S D   R    ++ A + TGR S      QN+P      
Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQNIP------ 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          I  P+G     +R   IA  G+ L+ AD + IE R++A  + +D 
Sbjct: 676 ---------------IRTPIGRQ---IRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDA 717

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + AF  G+D++  T A+     I+ V+ +QR   K +   L Y
Sbjct: 718 LVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    GA  TGR +      QN+P   RSEE                        
Sbjct: 659 GRVHTSYSLTGAV-TGRLASTDPNLQNIP--VRSEE----------------------GR 693

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +A  G++LV  D + IE R+LA +A      +AF  G+DI+  T ++ FN P+D
Sbjct: 694 RIREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFREGQDIHAMTASEMFNVPLD 753

Query: 423 KVSKEQRAIGKVMELALGY 441
           +++ + R   K +   + Y
Sbjct: 754 QMTPDIRRQAKAINFGVIY 772


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 642 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 701

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 702 VTNDQRRQAKAVNFGLLY 719


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 319 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 378

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 379 MPGEVRRRAKAINFGIIY 396


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD   IE R+LA +A      KAF+N EDI+  T ++ FN  I K
Sbjct: 679 IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSLTASQVFNVDIKK 738

Query: 424 VSKEQRAIGKVMELALGY 441
           V ++ R   K +   + Y
Sbjct: 739 VDQDMRRKAKAINFGIIY 756


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|294840299|ref|ZP_06784982.1| DNA polymerase I [Acinetobacter sp. 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
          Length = 923

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD   IE R+LA +A      KAF+N EDI+  T ++ FN  I K
Sbjct: 679 IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSLTASQVFNVDIKK 738

Query: 424 VSKEQRAIGKVMELALGY 441
           V ++ R   K +   + Y
Sbjct: 739 VDQDMRRKAKAINFGIIY 756


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 253  LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310
            L D S+GTL      + +TQ      L     +  AI   ++ L + ++S  G++  +L 
Sbjct: 1898 LKDTSDGTL------ARLTQYPAVQALRDYRKAAKAITTFVDKLPQHINSVTGKIHCSLH 1951

Query: 311  FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              GA  +GR+S      Q +PR+ R                            V S  +A
Sbjct: 1952 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSAKVA 1987

Query: 371  SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                K ++AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R 
Sbjct: 1988 GRPGKFIIADFSQIELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQ 2047

Query: 431  IGKVMELALGYQGGAKVFKTMAS 453
            + K +   L Y   A  F+  AS
Sbjct: 2048 LAKAVNFGLIYGMSADRFRGYAS 2070


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|294839290|ref|ZP_06783973.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013113]
 gi|294858990|ref|ZP_06796759.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013150]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
          Length = 923

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N EDI+  T  + FN    +
Sbjct: 630 IREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIFNLKKHE 689

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 690 LTSEHRRKAKAINFGIIY 707


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +  D R+ G       + TGR S      QN+P                     + 
Sbjct: 594 LAVYIGEDNRIHGKFN-QTITATGRISSTEPNLQNIP---------------------VR 631

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
            PLG     +R   I   G   + AD + IE R+LA ++ +   I A+ + +DI+  T +
Sbjct: 632 MPLGRE---IRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATAS 688

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             F+ P+++V+KEQR+  K +   + Y
Sbjct: 689 LVFHVPLEEVTKEQRSNAKAVNFGIVY 715


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  PI  
Sbjct: 777 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 836

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++ S  +K
Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIAREEASAYIK 877


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L + +   GR+ G     G + TGR S      QNLP                    
Sbjct: 550 VKALLKRIDETGRVHGNFIQTGTA-TGRLSSAEPNLQNLP-------------------- 588

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            ++DPL L    VR  + A  G  LV AD + +E R+LA ++ +   I+AF  GEDI+  
Sbjct: 589 -VSDPLSLR---VRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTE 644

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T    F+T   +++  +R + K +   + Y
Sbjct: 645 TAKHLFHT--RQITDRERRVAKTVNFGIIY 672


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 618 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F    D V  E R   K M   L Y
Sbjct: 714 QVFGVGKDAVDAEMRRKIKAMSYGLAY 740


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  +  AD + IE R++A ++ +   + AF  G D++  T A+ F   +D+
Sbjct: 697 VREAFVAPAGCVIASADYSQIELRIMAHLSDDQALLHAFHAGLDVHRATAAEVFGVALDQ 756

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           VS EQR   KV+   L Y  G+
Sbjct: 757 VSSEQRRYAKVINFGLIYGMGS 778


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 487 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 546

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 547 MPGEVRRRAKAINFGIIY 564


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 125/303 (41%), Gaps = 46/303 (15%)

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLD 204
           D T   H++ W    ++ K  +     +   L+P LS  ER+  ++D  +    ++   +
Sbjct: 503 DVTLQLHLKMWPELQQH-KGPLNVFENIEMPLVPVLSRVERNGVMIDPAVL---HKHSEE 558

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           + L+L EL   E+K  D        G   +   T  L+  LF   GI  +  + G   S 
Sbjct: 559 ITLRLAEL---EQKAHD------IAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTG 318
            S   + +LA D  L ++      + KL +T ++ +        GR+  T      + TG
Sbjct: 610 -SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATG 667

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P   R+EE                         +R   I      +V 
Sbjct: 668 RLSSTDPNLQNIPV--RNEE----------------------GRRIRQAFIPPKDHVIVS 703

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   
Sbjct: 704 ADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFG 763

Query: 439 LGY 441
           L Y
Sbjct: 764 LIY 766


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 812 MPGEVRRRAKAINFGIIY 829


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L  AV +DGR+  T Q   A+ TGR S      QN+P          +T + +       
Sbjct: 608 LISAVGADGRIHTTFQQTVAA-TGRLSSTEPNLQNIP---------ARTAEGMR------ 651

Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G   L+ AD + IE R++A ++ ++  I+AF +GED++ T  
Sbjct: 652 ---------IRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRTMA 702

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A  F  P+++V+   R+  K     L Y
Sbjct: 703 AMVFAVPVEEVTPALRSQIKATSYGLAY 730


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L+  +  D R+ G       + TGR S      QN+P   R E               
Sbjct: 595 DGLANYIGDDERIHGKFN-QTITATGRISSTEPNLQNIPA--RVE--------------- 636

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
               LG A   +R   +   G   V AD + IE RVLA ++G+   I A+   +DI+  T
Sbjct: 637 ----LGRA---IRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQDIHART 689

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            ++ F  PID+VS  QR   K +   + Y
Sbjct: 690 ASEVFGVPIDQVSSIQRRDAKAVNFGIVY 718


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 831 MPGEVRRRAKAINFGIIY 848


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 812 MPGEVRRRAKAINFGIIY 829


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRATAAEVFGVELEG 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTNDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 814 MPGEVRRRAKAINFGIIY 831


>gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 130

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
           G  L+   +  L  +L    +    + LI  R     ++  K   L   V +D R  G L
Sbjct: 10  GYPLMQFDKAILGEVLKDDTLPDTDRRLIEIRQQLGKTSTAKYAALKALVMNDHRAHGLL 69

Query: 310 QFYGASRTGRWSGCVFQPQNLPR 332
            ++GAS TGRWSG  FQPQNLPR
Sbjct: 70  MYHGAS-TGRWSGRHFQPQNLPR 91


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 831 MPGEVRRRAKAINFGIIY 848


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 45/233 (19%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L ++V+ DGR+  T Q   A+ TGR S      QN+P   R+EE           G  I 
Sbjct: 642 LRKSVADDGRIHTTYQQMIAA-TGRLSSTDPNLQNIPI--RTEE-----------GRRIR 687

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
           +   +  D       A +G + L+ AD + IE R++A ++G++  I AF +GED++    
Sbjct: 688 EAFVVGPDAG-----AGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVG 742

Query: 414 AKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           ++ F   P+D V+ E RA  K M   L Y              GL     S  +K ++  
Sbjct: 743 SRVFGVAPVD-VTPEMRAKIKAMSYGLAY--------------GLSAFGLSNQLKIST-- 785

Query: 473 EDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              E+A+     M + +  F  V+D L G   E  +  W     G  +   DL
Sbjct: 786 ---EEAKD---LMDEYFQRFGGVRDYLHGVVEEARRTGWTETIMGRRRYLPDL 832


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ E   + AF NGEDI+ +T A+ F   I++V++ QR+  K +
Sbjct: 715 LLAADYSQIELRIIAALSQEKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTV 774

Query: 436 ELALGY 441
              + Y
Sbjct: 775 NFGIIY 780


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 361 SDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
           ++  R C++ ++ K + + AD + IE RVLA + GE   ++AF  G DI+  T +  +  
Sbjct: 602 AEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGV 661

Query: 420 PIDKVSKEQRAIGKVMELALGY 441
             ++VS EQR   KV+   L Y
Sbjct: 662 AAEEVSAEQRRFAKVVNFGLLY 683


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 31/159 (19%)

Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
           I K+N+     L   V  DGR+         + TGR S      QN+P + E   EI   
Sbjct: 572 ITKINSTYVEGLKNVVDEDGRIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKV 630

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            I           P+   +D + SC            D + IE RVLA IAG++  I AF
Sbjct: 631 FI-----------PME-ETDILVSC------------DYSQIELRVLAHIAGDENMIDAF 666

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +  DI+  T ++ F  PI +V+   R+  K +   + Y
Sbjct: 667 EHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVY 705


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 814 MPGEVRRRAKAINFGIIY 831


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + ++ DGR+  T      + TGR S      QN+P +              + G  I 
Sbjct: 644 LIKTIAEDGRIHTTFH-QTVTATGRLSSAEPNLQNIPVRT-------------DAGRRIR 689

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     R+ ++    ++L+ AD + IE R++A ++ ++  I+AF +G D +    +
Sbjct: 690 ----------RAFVVGEGYEQLLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIAS 739

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F  P+D+V  E RA  K M   L Y
Sbjct: 740 RVFRIPVDQVDGEARARIKAMNYGLAY 766


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP--------LGLASDCVRSCIIASNGKKLVVADLA 382
           P  E+      QT+ A  R  + +DP          L  +  R  + +S    LV AD +
Sbjct: 608 PETEKIYSHFNQTVTATGRISS-SDPNLQNIPVRTDLGREIRRVFVPSSPMCVLVDADYS 666

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA +  ++  ++AFA  +DI+  T ++ F  P++ V++EQR+  K +   L Y 
Sbjct: 667 QIELRVLAHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIY- 725

Query: 443 GGAKVFKTMASHCGLDLQQ 461
            G + F ++    G+   Q
Sbjct: 726 -GKQAF-SLGKELGIGRNQ 742


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +AS G +L+ AD + IE R+LA ++ +   I AF  G D++ +T A+ F    + 
Sbjct: 633 IRQAFVASEGHRLLSADYSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEA 692

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           V+ E R   KV+   + Y     G A   +       L + ++ Q       F D    E
Sbjct: 693 VTVEMRRRAKVINFGIVYGMSPFGLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICE 752

Query: 480 SHHLWMQDQY-------PEFAVKDKLI--------------GTACELVKKAWRA 512
           +  L     +       PE    D+ +              G+A +L+K A  A
Sbjct: 753 ARELGFVSTFWGRRRAIPELKSSDQTVRQLGERLAVNTPIQGSAADLIKVAMIA 806


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G +L+ AD + IE R++A ++ +   ++AF  G D++  T A+ F   +++
Sbjct: 685 IRRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEE 744

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+  +R   K +   L Y  G   F  +A + G+D  Q
Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAFG-LARNLGIDRGQ 779


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R       GKKL+VAD + IE R+ A    ++  IKAF+ G+D++  T +       D+
Sbjct: 349 LRVLFRPPEGKKLIVADYSQIELRIAAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQ 408

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHC-GLDLQQFSQNVKSTSTFEDWEQAESHH 482
           ++K++R + K +   L Y    +     A +  G+D+      +  +  FE ++  +S H
Sbjct: 409 ITKDERQMAKAINFGLIYGISPRSLMEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWH 468


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           + TL  +V+ DGR+  T    G S TGR S      QN+P R E   EI +         
Sbjct: 607 VETLERSVTGDGRIHTTYDQTGTS-TGRISSNDPNLQNIPIRTEEGREIRS--------- 656

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                          S +     + L+ AD + IE R++A ++ +   I+AF  GED++ 
Sbjct: 657 ---------------SFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHR 701

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F  P ++V+   R   K M   L Y
Sbjct: 702 FVGSRVFGVPPEEVTPLMRTKVKAMSYGLAY 732


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 29/165 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +A+ +DGR+  T Q   A+ TGR S      QN+P   R EE +              
Sbjct: 661 LRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARHEEGMR------------- 704

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R       G + L+ AD + IE R++A ++ +   I+AF +GED++    
Sbjct: 705 ---------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLHRYVA 755

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           A      ++ V+ +QR+  K M   L Y  G   F  +A   G+D
Sbjct: 756 ALVHGIEVEDVTAQQRSHVKAMSYGLAY--GLSTFG-LARQLGID 797


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           ++ L   +  DGR+  +      + TGR S      QN+P R +R +EI           
Sbjct: 659 VDALPLLLGKDGRVHTSFN-QAVAATGRLSSTNPNLQNIPIRTDRGKEIR---------- 707

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R+ +   N   ++ AD + IE R++A  + ++  + AF  G DI+ 
Sbjct: 708 --------------RAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAFRKGVDIHS 753

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           TT +K F  PI+ V+ + R   K++   + Y
Sbjct: 754 TTASKVFKVPIEDVTADMRRKAKMVNFGIIY 784


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 123/306 (40%), Gaps = 63/306 (20%)

Query: 162 YCKRDVEATRELFKRLIP--LSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P  +++G        ER L  +   + +RG ++D  ++ +L  
Sbjct: 542 YAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSRLSG 601

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
             AQ++  L+ +I ++  G   +      L   LF   G+       G  K+        
Sbjct: 602 RFAQKQAGLEAEIAEIA-GETFNPGSPKQLGEVLFGKLGL------PGGKKT-----KSG 649

Query: 272 QLAKDL-ILNRLASSGSAILK---------------LNTLSEAVSSDGRLRGTLQFYGAS 315
           Q + D+ +L  LA+ G  + +                +TL   + + GR+  +     ++
Sbjct: 650 QWSTDVRVLEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSM-AST 708

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P   R+EE                         +R+  +A  G  
Sbjct: 709 TTGRLSSSEPNLQNIPV--RTEE----------------------GRAIRTAFVAPAGHS 744

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LV AD + IE R+LA IA      +AF  G DI+  T ++ F  P++ +  E R   K +
Sbjct: 745 LVSADYSQIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAI 804

Query: 436 ELALGY 441
              + Y
Sbjct: 805 NFGIIY 810


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  PI+ 
Sbjct: 751 IRKAFVADKGRKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    R   K +   + Y  G   F  +A+  GL   +    +K+
Sbjct: 811 MDPMVRRRAKAINFGIIY--GISAFG-LAAQLGLSRGEAGDYIKT 852


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A ++ ++  + AF +  D++  T A+ F   + +
Sbjct: 692 IRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
           V+ +QR   K +   L Y  GA+
Sbjct: 752 VTSDQRRSAKAINFGLIYGMGAQ 774


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 40/258 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLV 254
            G+R+D + + ++ E   +E + L+++I +L D    I+S +Q   +      +  I   
Sbjct: 494 EGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEFNIKSPKQLGKILFEKLDLPVIKKT 553

Query: 255 DMSEGTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                T   +L     SH  I ++ +   + +L S+      +  L   +  D ++  + 
Sbjct: 554 KTGYSTNAEVLEKLKDSHPIIEKIIEYRQITKLDSTY-----VEGLKNVIDEDAKIHSSF 608

Query: 310 QFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                + TGR S      QN+P + E   EI                         R   
Sbjct: 609 N-QTVTTTGRLSSTEPNLQNIPIKHEMGREI-------------------------RKVF 642

Query: 369 IASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           + +N + ++  AD + IE R+L+ IA ++  I AF + +DI+  T ++ F  PID+V+  
Sbjct: 643 VPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPL 702

Query: 428 QRAIGKVMELALGYQGGA 445
            R+  K +   + Y  GA
Sbjct: 703 MRSNAKAVNFGIVYGIGA 720


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA+   ++V  D + IE R++A ++ +   + AF   EDI+ +T +  FNT    
Sbjct: 662 VREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLLDAFNQNEDIHRSTASAIFNTNDAS 721

Query: 424 VSKEQRAIGKVMELALGY 441
           VS EQR   KV+   L Y
Sbjct: 722 VSSEQRRFAKVINFGLIY 739


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 25/156 (16%)

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           G+    L T++     D RL  T    GA +TGR +      QN+P   RSEE       
Sbjct: 641 GTYTDPLPTMTIDHDGDQRLHTTYNQTGA-QTGRLNSNDPNLQNIPV--RSEE------- 690

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G ++V AD + IE R++  ++ +   I+AF  G
Sbjct: 691 ---------------GRSIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREG 735

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +DI+  T A+      ++VS EQR   K +   L Y
Sbjct: 736 KDIHRATAAEVMGIEEEQVSAEQRRSAKAINFGLIY 771


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G ++V AD + IE R++A ++ +   ++AF    D++  T A+ F   +D 
Sbjct: 670 IRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGLLEAFRENLDVHSATAAEVFGVSLDA 729

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476
           VS EQR   K +   L Y  G   F  +A    LD       +  + +       + D  
Sbjct: 730 VSGEQRRKAKAINFGLIY--GMSAFG-LARQLRLDRGEAQRYIDVYFERYPGVREYMDNT 786

Query: 477 QAESHH------LWMQDQY-PEFAVKDK--------------LIGTACELVKKA 509
           +A +H       L+ +  Y PE  V++K              + GTA +++K+A
Sbjct: 787 RALAHEQGYVETLFGRRLYLPEINVRNKNRQQAAERTAINAPMQGTAADIIKRA 840


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + +E R LA ++ ++   +AF +GEDI+  T ++ FN P+D+V++ QR   K +
Sbjct: 641 FLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAV 700

Query: 436 ELALGY 441
              L Y
Sbjct: 701 NFGLAY 706


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 37/270 (13%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ 237
           L+D E  L  +   + + G ++D +++ K  E IA +  +L++   ++   +  + S +Q
Sbjct: 520 LTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDELEQKAFEIAGEEFNLGSPKQ 579

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT--- 294
              L+  LF    + ++  +     S  +   + +LA D  L  +     ++ KL +   
Sbjct: 580 ---LQQILFEKLELPVIKKTPKGAPST-AEEVLQELAHDYPLPDVILQHRSLAKLKSTYT 635

Query: 295 --LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
             L   ++ D GR+  + Q    + TGR S      QN+P                    
Sbjct: 636 DKLPRMINPDTGRVHTSYQ-QAVAATGRLSSTEPNLQNIP-------------------- 674

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I  P G     VR   +A  G  +V  D + IE R++A ++ +   ++AFA G+DI+  
Sbjct: 675 -IRTPEGRR---VRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLRAFAQGQDIHRA 730

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F   +++V+ EQR   K +   L Y
Sbjct: 731 TASEVFGCSLEEVTDEQRRRAKAVNFGLIY 760


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 24/128 (18%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR S      QN+P                     +  PLG     +R   +A  G
Sbjct: 566 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEEG 601

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            +LVV D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    R   K
Sbjct: 602 WRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAK 661

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 662 TINFGVLY 669


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  PI  
Sbjct: 791 IRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 850

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++ S  +K
Sbjct: 851 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIAREEASAYIK 891


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 27/166 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++L    + DGR+  T     A+ TGR S      QN+P       I T   + +  G 
Sbjct: 618 VDSLIPMAAEDGRIHTTFNQMVAA-TGRLSSTDPNLQNIP-------IRTAEGRQIREGF 669

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            +    G   +C            L+ AD + IE R++A ++G++  I+AF +G D +  
Sbjct: 670 VV----GEGYEC------------LLTADYSQIELRIMAHLSGDEALIEAFTSGADFHTI 713

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           T ++ F  P +++  E RA  K M   L Y  G   F  +AS  G+
Sbjct: 714 TASRVFGLPPEQIDGELRARIKAMNYGLAY--GLSPFG-LASQLGI 756


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  +  DGR+ G       + TGR S      QN+P R E   +I              
Sbjct: 596 LAVYILEDGRIHGHFN-QTITATGRISSTEPNLQNIPVRMEIGRQI-------------- 640

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      R   +   G   + AD + IE R+LA ++ +D  I A+   +DI+  T 
Sbjct: 641 -----------RKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITA 689

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+ P+D+V++ QR+  K +   + Y
Sbjct: 690 SQVFHVPLDEVTRTQRSNAKAVNFGIIY 717


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA  G+ L+ AD + IE R++A  +G+D   +AF  G DI+  T A+     +D
Sbjct: 773 LIRQAFIAPKGRVLLAADYSQIELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVD 832

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+  +R   K +   L Y
Sbjct: 833 DVTPTERRNAKAINFGLLY 851


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE RVLA +A      KAF  G DI+  T ++ F TPI+ 
Sbjct: 550 IRQAFVAEKGMKLISADYSQIELRVLAHMADIPQLKKAFEEGLDIHAMTASEMFGTPIEG 609

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    R   K +   + Y  G   F  +A+  G+   + S  +K+
Sbjct: 610 MDPMVRRQAKAINFGIIY--GISAFG-LAAQLGISRGEASDYIKT 651


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +RS  +   G    + +D + +E RVLA ++G++  I+AF N EDI+  T A+    P +
Sbjct: 618 IRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRTAAEVLGIPFE 677

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ EQR+  K +   + Y
Sbjct: 678 EVTSEQRSHAKAVNFGIIY 696


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKKL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  PI+ 
Sbjct: 737 IRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 796

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +    R   K +   + Y  G   F  +A+  G+
Sbjct: 797 MDPMVRRRAKAINFGIIY--GISAF-GLANQLGI 827


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I  +G     AD + IE R++A ++G++  ++AF  G DI+  T AK ++  I+K
Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIWHEDIEK 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDAQRKKAKQANFGIIY 758


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 179/463 (38%), Gaps = 94/463 (20%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSKRWICTS 97
           ++P  LW   ++S   S          V+C+AHN  FE + L+K+ + +  P    I  +
Sbjct: 76  EDPDALWAFLKESIFES--------HDVICIAHNLSFEAMFLYKQGIVVQEPCYDTIAAA 127

Query: 98  VLARTN-----GL-PSSLKNACLAL------NFSE-----HLTKMEEGKALIARFCKGSI 140
            L   +     GL  S LK    +L      +FS      H  +M   +    R      
Sbjct: 128 QLTMKSKWEFRGLHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMNPQEYETVR------ 181

Query: 141 DSPPYDCTRANHVQA-WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
               Y C  +++    +  F  +  R + A R + ++L      E    ++   +   G 
Sbjct: 182 ----YACADSDYTLCLYYKFNNWFDRFLPAHRIITEQL------ESPTAVMVGCMKYNGI 231

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGI-IRSSRQTYALRMYLFLITGIDLVDMSE 258
            +D   +L+ Q     +   L  +I +LT G+ I ++  T A + YL+   G+ ++  +E
Sbjct: 232 PVDRKAMLEKQTEAVAKVDALKAEINELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTE 291

Query: 259 GTLKSI------LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV---------SSDG 303
              ++       L      Q   +L+  RL  +     K   L             S+ G
Sbjct: 292 KNQEAADDAAMQLLEEYCAQHRPELV--RLFQAVQEYRKWGKLKSTYIDGYLDHVNSATG 349

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+   L   G + TGRW+      QN PR+                     DP+G     
Sbjct: 350 RIHPDLMPLG-TDTGRWAARNPNMQNAPRKTN-------------------DPIG----- 384

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420
           +R+ I+A  G+ ++  D + IE RV A+   +   ++ + +G DI+  T +  F  P   
Sbjct: 385 IRNFIVAPPGQIIMSLDFSQIELRVGAFYCRDPKMLETYRSGGDIHAQTTSVVFGVPFEV 444

Query: 421 -IDKVS---KEQRAIGKVMELALGYQGGAKVF-KTMASHCGLD 458
            +DK +   KE R I K     + Y    +   KT+    GLD
Sbjct: 445 AVDKNAPNYKEHRTIAKNCNFGVFYGLFPRGLQKTLRFKAGLD 487


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 77/184 (41%), Gaps = 35/184 (19%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           LS++VS D R+  T     A+ TGR S      QN+P       I T             
Sbjct: 620 LSKSVSPDTRIHTTYNQMIAA-TGRLSSVDPNLQNIP-------IRT------------- 658

Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
               L    +R   IA  G + L+ AD + IE R++A ++ +   I+AF +GED++ T  
Sbjct: 659 ----LEGQQIRKAFIAGPGYESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVA 714

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           AK F+     V  E R   K M   L Y  G   F       GL  Q   +  ++    E
Sbjct: 715 AKVFDVEATAVEPEHRRRIKAMSYGLAY--GLSAF-------GLSQQLGIETGEAAKMME 765

Query: 474 DWEQ 477
           D+ Q
Sbjct: 766 DYFQ 769


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T A+  N    +
Sbjct: 664 IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSE 723

Query: 424 VSKEQRAIGKVMELALGY 441
           V+KEQR + K +   + Y
Sbjct: 724 VTKEQRRLAKTVNFGVIY 741


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 113/281 (40%), Gaps = 73/281 (25%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  NG  LV AD + IE R+LA ++ E   ++A+ + +D++  T    F+    +
Sbjct: 703 IRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--RE 760

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           ++ E+R++GK +   + Y  GA              Q+F++  K T         E    
Sbjct: 761 ITPEERSLGKTINFGVIYGMGA--------------QKFARESKLT--------VEQGRK 798

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +++  +  +A          ++ +    +K Q +       T+G+   +     +  RR 
Sbjct: 799 FIEKYHQRYA----------QVFEYLENSKKQAI-------TQGYVETI-----LGRRRY 836

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
            N    +++R            R L   D+  D   LN   +QL+R            +Q
Sbjct: 837 FNFDNPLLKR-----------LRGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQ 879

Query: 604 AISRDI-------LCEGMKNATKNGYDIVLTVHDEIVSETP 637
             S DI       L E ++N       ++L VHDE+V E P
Sbjct: 880 GSSADIIKVAMVKLAEVLQNYRAR---LLLQVHDELVLEVP 917


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+  D + I+ RVLA ++ +   I+AF + +DI+  T A+  N    K
Sbjct: 664 IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNVSPSK 723

Query: 424 VSKEQRAIGKVMELALGY 441
           V+KEQR + K +   + Y
Sbjct: 724 VTKEQRRLAKTVNFGVIY 741


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A   K+L+  D + IE RVLA I+ ++  I A+  G+DI+  T A+ F     +
Sbjct: 630 IRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASE 689

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   + Y
Sbjct: 690 VSYQQRRRAKAINFGIAY 707


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I   G     AD + IE R++A ++G++  I+AF  G DI+  T AK ++  IDK
Sbjct: 681 IRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFREGFDIHRATAAKIWHEEIDK 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDSQRKKAKQANFGIIY 758


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G  L+ AD + IE R+LA I       +AF +G DI+  T ++ F  P++ 
Sbjct: 721 IRQAFIASPGHVLISADYSQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEG 780

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+  G+D  +    +K+
Sbjct: 781 MPSETRRRAKAINFGIIY--GISAFG-LAAQLGIDQGEAGAYIKT 822


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  N   L   AD + IE R++A ++G+   I+AF +G DI+  T AK +  P++
Sbjct: 681 IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           KV+ + R   K     + Y  G  VF  +A   G+
Sbjct: 741 KVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  N   L   AD + IE R++A ++G+   I+AF +G DI+  T AK +  P++
Sbjct: 681 IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           KV+ + R   K     + Y  G  VF  +A   G+
Sbjct: 741 KVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T A+  N    +
Sbjct: 664 IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSE 723

Query: 424 VSKEQRAIGKVMELALGY 441
           V+KEQR + K +   + Y
Sbjct: 724 VTKEQRRLAKTVNFGVIY 741


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 5/141 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  PI  
Sbjct: 760 IRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 819

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           +  E R   K +   + Y  G   F  +A+  G+  ++    +K    FE +    ++  
Sbjct: 820 MPGEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK--KYFERFPGIRAYMD 874

Query: 484 WMQDQYPEFAVKDKLIGTACE 504
             +D   E      L G  C 
Sbjct: 875 ATRDFCREHGYVTTLFGRKCH 895


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T A+  N    +
Sbjct: 664 IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSE 723

Query: 424 VSKEQRAIGKVMELALGY 441
           V+KEQR + K +   + Y
Sbjct: 724 VTKEQRRLAKTVNFGVIY 741


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R+LA IA      +AFA G DI+  T +  F  P+D+
Sbjct: 781 IRQAFVADEGHKLISADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQ 840

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ + R   K +   + Y
Sbjct: 841 MTPDLRRRAKTINFGIIY 858


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +  AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLES 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTAEQRRSAKAINFGLIY 766


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 45/186 (24%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA  + +   I AF N EDI+  T A   N P+++V+KEQR   K +   
Sbjct: 660 ADYSQIELRLLAHFSEDPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNFG 719

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA-------------------- 478
           + Y  G + +  ++   G+ L++ S  +K  + F+ +++                     
Sbjct: 720 ILY--GQQAW-GLSKELGISLEEASAFIK--TYFQRYQRVKDFVESCKEKTRKTGRAMTI 774

Query: 479 ----------ESHHLWMQDQYPEFAVKDKLIGTACELVKKA--------WRAKHQG--VL 518
                     +S +  ++      AV   L GTA +L+KKA         R +H G  +L
Sbjct: 775 IGRERPIPEIDSKNPQIRGAAERLAVNTPLQGTAADLIKKAMIVIDEKLMRGQHLGFMIL 834

Query: 519 QLWKDL 524
           Q+  +L
Sbjct: 835 QIHDEL 840


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I      +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%)

Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205
           GE+ +   E    +  LF+ L P LS  E+ LWL  +           +  RG R+D+ L
Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +  L   + +E ++L+ +I +L       +SR    L   LF   G+  V  +E T K  
Sbjct: 456 LEALSFELEKEMERLEGEIFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513

Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
            +   +  L       +LIL     S      L+ L   V    GRL        A+ TG
Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                     +  PLG     +R   +A  G  L+ 
Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461
           + Y   A     ++   G+D ++
Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IAS G  L+ AD + IE RVLA  A      +AFA G+DI+  T A+ F   ++ 
Sbjct: 682 IRTAFIASKGYLLLSADYSQIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEG 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +S E R   K +   + Y  G   F  +A+  G+  ++ S  ++
Sbjct: 742 MSSEIRRRAKAINFGIIY--GISPF-GLANQLGISRKEASHYIQ 782


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I      +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ 
Sbjct: 689 IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 749 VTSEQRRSAKAINFGLIY 766


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 25/126 (19%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R E S +I             I  P G   D + SC        
Sbjct: 615 TGRLSSTDPNLQNIPARTEESRQI-----------RRIFVP-GAGYDLLMSC-------- 654

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
               D + +E R+LA IA ++  ++AF +G+DI+  T A+ F  P+D+V+ + R+  K +
Sbjct: 655 ----DYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSRAKAV 710

Query: 436 ELALGY 441
              + Y
Sbjct: 711 NFGIVY 716


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  PI  
Sbjct: 780 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPIKG 839

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++ S  +K
Sbjct: 840 MPSEIRRRAKAINFGIIY--GISAF-GLANQLGIAREEASAYIK 880


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I     +LV AD + IE RVLA +A      +AFA+G DI+  T ++ FN P++ 
Sbjct: 754 IRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 814 MPSEVRRRAKAINFGIIY 831


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I+  G + + AD + IE RVLA IA +D  I AF   +DI+  T ++ F  P+++
Sbjct: 655 LRKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVPMEE 714

Query: 424 VSKEQRAIGKVMELALGY 441
           V+   R   K +   + Y
Sbjct: 715 VTSLMRGDAKAVNFGIVY 732


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF +  D++  T A+ F   ++ 
Sbjct: 683 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHNLDVHRATAAEVFGVELEA 742

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ +QR   K +   L Y  G   F  +A   G+D +Q
Sbjct: 743 VTLDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 777


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T]
          Length = 62

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           MK    NGY +V+  HDE+++E P+  + SV  + +LMT+   W    P++A G++  RY
Sbjct: 1   MKKCENNGYPVVMHTHDELIAEVPED-FGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59

Query: 674 RK 675
           +K
Sbjct: 60  QK 61


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    GA+ TGR +      QN+P   R+EE                        
Sbjct: 657 GRVHTSYSITGAN-TGRLASTDPNLQNIPV--RTEE----------------------GR 691

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA  G  LV  D + IE R+LA IA      +AFA+G DI+  T ++ F+ P+D
Sbjct: 692 RIRGAFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLD 751

Query: 423 KVSKEQRAIGKVMELALGY 441
           +++ E R   K +   + Y
Sbjct: 752 EMTPEIRRQAKAINFGVIY 770


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F TPI+ 
Sbjct: 753 IRKAFIAEKGHKLISADYSQIELRVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEG 812

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    R   K +   + Y  G   F  +A+  G+   +    +K+
Sbjct: 813 MDPMVRRRAKAINFGIIY--GISAFG-LANQLGISRGEAGDYIKT 854


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 360 ASD-CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           ASD  VR C +A  G  +   D    E RVLA ++G+   I+AF +G D+++ T   AF 
Sbjct: 374 ASDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAFG 433

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
             I K   E R   K +     Y GGA    T+A   G+ ++   Q V
Sbjct: 434 DHITKDDPE-RKYAKTVNFGRVYGGGA---NTVAEQTGISIETAKQVV 477


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G +LV AD + IE R+LA ++ E   IK +   ED++  T    F+   D+
Sbjct: 665 IRQAFLPKEGWQLVAADYSQIELRILAHLSEEPILIKTYREDEDVHRLTATLLFDKDKDE 724

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ--NVKSTSTFEDWEQAE 479
           ++ E+R + KV+   + Y  GA  F        LD + F    N +  + FE  +Q +
Sbjct: 725 ITVEERRMAKVINFGVIYGMGAARFAREMDIHRLDAKTFIDRFNQRYPNVFEYLQQMQ 782


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F   ++ 
Sbjct: 686 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 745

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 746 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 780


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F   ++ 
Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           V+ + R   K +   L Y  G   F  +A   G+D +Q
Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRS---------CIIASNGKKLVVADL 381
           PR  R      QTI A  R  +  DP  L +  +R+          ++    + L+ AD 
Sbjct: 621 PRDARIHTTFNQTIAATGRLSS-TDP-NLQNIPIRTEEGRRIREAFVVGEGYESLMSADY 678

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++ ++  I AF +GED +  T A+ F+    +V++E RA  K M   L Y
Sbjct: 679 SQIEMRIMAHVSEDEGLIDAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAY 738


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 132/316 (41%), Gaps = 51/316 (16%)

Query: 160 GEYCKRDVEATRELFKRLIP---LSDGERDLWLLDQ-------TINDRGYRIDLDLVLKL 209
           G Y   D + T +L + L P      G   ++LL+        TI   G ++D   + + 
Sbjct: 517 GHYAAEDADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQ 576

Query: 210 QELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
              + QE  +L++   +L      + S +Q   L   LF    + +V  + G   S    
Sbjct: 577 SHKLGQEMLQLEQKAYELAGQPFNLNSPKQ---LGEILFGRMQLPVVRKTAGGAPST-DE 632

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWS 321
             +++LA+D  L ++      + KL +     L   ++ D GR+  T     A  TGR +
Sbjct: 633 EVLSKLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVH-THYSQAAVITGRLA 691

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P   R+E                      A   VR   IA  G  L+ AD 
Sbjct: 692 SSDPNLQNIPV--RTE----------------------AGRRVREAFIAEQGL-LLSADY 726

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++ +    +AFA GEDI+  T ++ F   +  VS EQR   K +   L Y
Sbjct: 727 SQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINFGLIY 786

Query: 442 QGGAKVFKTMASHCGL 457
             G  VF  +AS+ G+
Sbjct: 787 --GMGVFG-LASNLGI 799


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    G + TGR S      QNLP   +SEE                        
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654

Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R  I+  +    +V AD + IE R+LA ++G++  +KAF  G D++  T ++ FN   
Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V++E R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+KL+  D + IE R++A ++ +   ++AF+ G D++  T A+ F   +++
Sbjct: 683 IRRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGVDVHRATAAEVFGRTLEQ 742

Query: 424 VSKEQRAIGKVMELALGY 441
           VS  +R   K +   L Y
Sbjct: 743 VSANERRAAKAINFGLMY 760


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 42/296 (14%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN-----------DRGYRIDLDLVLKLQ 210
           Y   D + T  L + L P  + +  L ++ +TI              G  ID D++ K  
Sbjct: 484 YAAEDADITLRLHQMLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQS 543

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
             I +   +L+++  +L       S     L++ LF    + ++  +     S  +   +
Sbjct: 544 FEIGKRLDELEKEAHELAGEAFNLSSPK-QLQVILFEKHELPVIKKTPKGAPST-AEEVL 601

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA D  L +L      + KL +     L   V++D +   T      + TGR S    
Sbjct: 602 QELAHDYPLPKLIIEHRGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDP 661

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P   R+EE                         +R   +A+ G K+  AD + IE
Sbjct: 662 NLQNIPI--RTEE----------------------GRKIRQAFVAAKGYKIAAADYSQIE 697

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            R++A ++ +   + AFA G D++  T A+ F   + +V+ + R   K +   L Y
Sbjct: 698 LRIMAHLSQDKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIY 753


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE R++A ++ +   +KAF  G+D++  T ++ F+    +
Sbjct: 674 IREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLLKAFREGQDVHKATASEIFDIAPLE 733

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ EQR   KV+   L Y  G   F  +AS+ G+
Sbjct: 734 VTPEQRRYAKVINFGLIY--GMSAF-GVASNLGI 764


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    G + TGR S      QNLP   +SEE                        
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654

Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R  I+  +    +V AD + IE R+LA ++G++  +KAF  G D++  T ++ FN   
Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V++E R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 122/301 (40%), Gaps = 45/301 (14%)

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D +AT  L ++L+P          L + E  L  +   +   G  +DL  + +L  
Sbjct: 458 YAAEDADATWLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGN 517

Query: 212 LIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
              Q  ++L++ I++L  G   + S +Q   L   LF   G+     ++G       +  
Sbjct: 518 GFGQRMQELEKRIIELAGGPFNLNSPKQ---LEEVLFERLGLQAGKKTKGKTGRSTDNEV 574

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           +T LA++  + +L      + KL     + L++     GR+  +      + TGR S   
Sbjct: 575 LTGLAEEHEIAKLLLDYRGLTKLKSTYTDALAKLTDRQGRVHTSYN-QAVTATGRLSSSD 633

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P   R++E                         +R   IA  G  ++ AD + I
Sbjct: 634 PNLQNIPI--RTDE----------------------GRRIREAFIAPPGCVILAADYSQI 669

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA ++ +     AF+  EDI+  T ++ F    + V+ E R   K +   + Y  G
Sbjct: 670 ELRVLAHLSQDPVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQG 729

Query: 445 A 445
           A
Sbjct: 730 A 730


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382
           P  ER      QT+ A  R  ++ DP          A   +RS  +   G + L+  D +
Sbjct: 702 PADERIHTTFEQTVAATGRLSSV-DPNLQNIPNRNAAGREIRSAFVPGEGFESLMSCDYS 760

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +E R++A ++G++  I+AF +G D +    +     P+D+++ +QR+  K M   L Y
Sbjct: 761 QVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAY 819


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ GK L+ AD + IE R+LA I       KAF  G DI+  T ++ FN PI+ 
Sbjct: 730 IRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFNVPIEG 789

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 790 MPSEVRRRAKAINFGIVY 807


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKAVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 166/416 (39%), Gaps = 49/416 (11%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSKRWICTSVLARTNG---- 104
           Q+A+   L      + V+ VAHN  FE + L+ + + +  P    I  S L   +     
Sbjct: 77  QAAIWDYLKLLFESKDVIKVAHNLAFESMFLYARGIVLQKPCYDTIAASQLTLKSKWEFR 136

Query: 105 --LPSSLKNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANH-VQAWQLF 159
               S LK    AL  +E    + + EG+            +  Y C  +++ ++ + +F
Sbjct: 137 SLADSGLKTLAPALCKAEMTEFSTVTEGR-FFDELNPQDEKTVRYACADSDYTLRLYHVF 195

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++  R +   R + + +      E    +    +   G  +D   +LK Q   A++   
Sbjct: 196 NQWFDRFLPKHRTIVEEV------ESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVS 249

Query: 220 LDEDIVKLTDGI-IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           + ++I  +   + I ++  T A + YLF       VD+    +K+   H         ++
Sbjct: 250 IRKEIAGIIGNVEIGANASTSAFKKYLF-------VDLGLPVMKTTAKHQEAADDETMIL 302

Query: 279 LNR-LASSGSAILKLNTLSEAVSSDGRLR-----GTLQFYGASRTGRWSGCVFQPQNLPR 332
           L    A++   +++L  L +     G+L+     G L+F     TGR       P  +P 
Sbjct: 303 LKEWCATNRPELVRLFELVQEYRKWGKLKSTYIDGYLRFIDED-TGR-----IHPDLMPL 356

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
              +    ++     N  +   DP+G     VR  IIA  GK L+  D + IE RV A+ 
Sbjct: 357 GTETGRFASRNPNMQNCPQKDNDPIG-----VRKFIIAPAGKVLLSLDFSQIELRVGAFY 411

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKVMELALGY 441
             +   ++ +  G DI+  T +  +  P ++ +       KE+R I K     + Y
Sbjct: 412 CRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFY 467


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 28/147 (19%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           S D R+  +    G + TGR S      QN+P +  S       IQ              
Sbjct: 623 SDDNRIHTSFLHTGTA-TGRLSSKNPNLQNIPTKSDS------NIQ-------------- 661

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   I  +G KLV  D + IE R+LA  + +   ++AF N  DI+  T  K F  
Sbjct: 662 ----IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFG- 716

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446
             ++ +KE+R I K +   L Y  G+K
Sbjct: 717 --EENAKEKRGIAKSINFGLLYGMGSK 741


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   + +DG +  T      + TGR S      QN+P + E   EI              
Sbjct: 582 LKAVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +  I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T 
Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           ++ F  P+++V+   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 28/153 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   +  DG++  +      + TGR S      QN+P + E   EI              
Sbjct: 597 LKHVIDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREI-------------- 641

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   + +N + ++  AD + IE RVLA IA ++  I AF + +DI+  T
Sbjct: 642 -----------RKVFVPNNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTIT 690

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            ++ F   ID+V+   R+  K +   + Y  GA
Sbjct: 691 ASEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGA 723


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 27/144 (18%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357
           V  DGR+   L     + TGR S      QN+P R E  + I                  
Sbjct: 682 VKEDGRIHCKLNQL-VTATGRLSSTEPNLQNIPIRMELGKRI------------------ 722

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  R   +   G   V AD + IE R++A ++G++  IKA+   EDI+  T +  F
Sbjct: 723 -------RKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRITASHVF 775

Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441
             P+D+V+  QR   K +   + Y
Sbjct: 776 GVPLDEVTDLQRRNAKAVNFGIIY 799


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R C +    G K + AD + IE R+LA ++ ++  + AF +G D +  T ++ F  P++
Sbjct: 635 IRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVE 694

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS E R+  K +   + Y
Sbjct: 695 DVSPELRSRAKAVNFGIVY 713


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKLV AD + IE R++A +A       AFA+G DI+  T ++ F  P+D 
Sbjct: 689 IRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDG 748

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +    R   K +   + Y  G   F  +A+  G+
Sbjct: 749 IDPALRRRAKAINFGIIY--GISAFG-LAAQLGI 779


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR    A +G  +V AD + IE R++A ++G+     AF N ED++  T A+ F    +K
Sbjct: 687 VRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAAFQNNEDVHRRTAAEVFGVAPEK 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS-----TSTFEDWEQA 478
           ++ EQR   K +   L Y  G      +A   G+D    +  +K      T   E  ++ 
Sbjct: 747 ITLEQRRYAKTINFGLIYGMGE---YGLAKSLGIDNVSAAMFIKRYFARYTGVAEYMQRT 803

Query: 479 ESH-------------HLWMQDQYPEFAVK----------DKLIGTACELVKKA 509
           + H              L++ D +   A+K            + GTA +L+KKA
Sbjct: 804 KEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGAERAAINAPMQGTASDLIKKA 857


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I   G +   AD + IE RV+A ++ +   + AF  G DI+  T AK ++ P+ +
Sbjct: 688 IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDAFREGYDIHSATAAKIYDKPVSE 747

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V++++R   K     + Y  G  VF
Sbjct: 748 VTRDERTKAKRANFGIIY--GITVF 770


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382
           PR  R      QT+ A  R  ++ DP          A   +RS  +   G + L+ +D +
Sbjct: 669 PRDGRIHTTFEQTVAATGRLSSV-DPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYS 727

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +E R++A ++G++  I+AF +G D +    +  +  P+++++ +QR+  K M   L Y
Sbjct: 728 QVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 786


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S  GR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 192 LIKTISPGGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 239

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +D  I+AF +GED++ T  +
Sbjct: 240 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVAS 287

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F     +V  E R   K M   L Y
Sbjct: 288 QVFGVAKSEVDPEMRRKIKAMSYGLAY 314


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 51/241 (21%)

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           +++SH N+++L             + + KL TL +   +DGR+  T      + TGR S 
Sbjct: 49  AVISHRNLSKL-----------KSTYVDKLATLID--PADGRVHTTFN-QTVTATGRLSS 94

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                     I  P G     +R+  +A+     + AD +
Sbjct: 95  SNPNLQNIP---------------------IRTPEGRR---LRAAFVAAAEHLFLAADYS 130

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            I+ RVLA  +G+    +AFA+ +DI+  T A+ F      VS + R + K +   + Y 
Sbjct: 131 QIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVY- 189

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--WEQAESHHLWMQDQYPEFAVKDKLIG 500
            G   F       GL  +Q   + K   TF D  +E  +  H +MQ+   E A +D  +G
Sbjct: 190 -GMSAF-------GL-AEQLRCSRKEAQTFIDRYFELYQGVHRFMQE-IVEQARRDGWVG 239

Query: 501 T 501
           T
Sbjct: 240 T 240


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 29/177 (16%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E ++++ GR+  +    GA +TGR S      QN+P   R+EE             
Sbjct: 667 DALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQNIPI--RTEE------------- 710

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R+  +A  G  L+ AD + IE R+LA I   D    AF N  DI+  
Sbjct: 711 ---------GRKIRAAFVAQEGNVLIAADYSQIELRLLAHIGNIDTLKDAFNNDLDIHAM 761

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           T ++ F  PI+ +    R   K +   + Y  G   F  +A   G+   + S+ +K+
Sbjct: 762 TASEMFGVPIEGMDPMIRRKAKAINFGIIY--GISAFG-LARQLGIPRGEASEYIKA 815


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  LV  D + IE R+LA IA      +AFA+G DI+  T ++ F+ P+D+
Sbjct: 693 IREAFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDE 752

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 753 MTPEIRRKAKAINFGVIY 770


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    GAS TGR S      QN+P   RSE                      A  
Sbjct: 656 GRVHTSYVISGAS-TGRLSSTDPNLQNIPI--RSE----------------------AGR 690

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA  G  L+  D + IE R+LA IA  D   +AF  G+DI+  T ++ FN P++
Sbjct: 691 KIREAFIAEEGNVLLSLDYSQIELRILAHIAKIDTLKQAFHEGQDIHALTASQMFNVPLE 750

Query: 423 KVSKEQRAIGKVMELALGY 441
            +    R   K +   + Y
Sbjct: 751 NMDPMVRRQAKAINFGVIY 769


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 623 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 670

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  A
Sbjct: 671 ------------FVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAA 718

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 719 QVFAVERSAVDAEMRRKIKAMSYGLAY 745


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L +A   DGR+  T     A+ TGR S      QN+P   RSEE           G 
Sbjct: 582 VDGLLKATHEDGRIHTTYAQTVAA-TGRLSSLNPNLQNIPV--RSEE-----------GR 627

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I D            ++    + L+  D + IE R++A ++ ++  I+A+ NGED++  
Sbjct: 628 RIRD----------VFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRY 677

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             ++ FN   ++V+ E R+  K M   L Y
Sbjct: 678 VGSRVFNVEPEEVTSEMRSKVKAMSYGLAY 707


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%)

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           + +L +AV+  DGR+  T +   A+ TGR S      QN+P R     EI          
Sbjct: 655 VQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGREI---------- 703

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          RS  +   G + L+ +D + +E R++A ++G+D  I+AF +G D 
Sbjct: 704 ---------------RSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADF 748

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +    +  +  P+D ++ +QR   K M   L Y
Sbjct: 749 HKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 781


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382
           PR  R      QT+ A  R  ++ DP          A   +RS  +   G + L+ +D +
Sbjct: 670 PRDGRIHTTFEQTVAATGRLSSV-DPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYS 728

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +E R++A ++G++  I+AF +G D +    +  +  P+++++ +QR+  K M   L Y
Sbjct: 729 QVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 787


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 25/155 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V+++GR+        A+ TGR S      QN+P +                  
Sbjct: 618 LEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNLQNIPIR------------------ 658

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                 G     +R+C  A  G +L  AD + +E RVLA  +G+   + AF + EDI+  
Sbjct: 659 ------GDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHDEDIHSR 712

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           T A  F+     V+ ++R   K +   L Y  G +
Sbjct: 713 TAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQ 747


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY 785


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G  L+ AD + IE R++A ++ +    +AF  GEDI+  T ++ F   ++ 
Sbjct: 667 VREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQRAFEAGEDIHRATASEVFGVSLED 725

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS EQR   K +   L Y  G  VF  +AS+ G+
Sbjct: 726 VSTEQRRAAKAINFGLIY--GMGVFG-LASNLGI 756


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%)

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           + +L +AV+  DGR+  T +   A+ TGR S      QN+P R     EI          
Sbjct: 654 VQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGREI---------- 702

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          RS  +   G + L+ +D + +E R++A ++G+D  I+AF +G D 
Sbjct: 703 ---------------RSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADF 747

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +    +  +  P+D ++ +QR   K M   L Y
Sbjct: 748 HKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 129/323 (39%), Gaps = 53/323 (16%)

Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205
           GE+ +   E    +  LF+ L P LS  E+ LWL  +           +  RG R+D+ L
Sbjct: 398 GEFTEDAAERALLSERLFQTLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +  L   + +E ++L+ ++ +L       +SR    L   LF   G+  V  +E T K  
Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513

Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
            +   +  L       +LIL     S      L+ L   V    GRL        A+ TG
Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                     +  PLG     +R   +A  G  L+ 
Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA ++G++   + F  G+DI+  T A  F      V ++ R   K +   
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKMRRAAKTVNFG 668

Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461
           + Y   A     ++   G+D ++
Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY 785


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           LS+ V  DG++  T+     ++TGR S      QN+  R E  +EI              
Sbjct: 578 LSKHVLKDGKIH-TIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEI-------------- 622

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      R   +AS G  L+ AD + IE R+LA +A E+  I AF +G DI+  T 
Sbjct: 623 -----------RKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTA 671

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + F+   D V    R   K +   + Y
Sbjct: 672 MQIFDVEHDAVDANMRRSAKTVNFGIVY 699


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 161/424 (37%), Gaps = 93/424 (21%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----KRWICTSVLARTNG 104
           E +      L YL+DET               KK  G DI S     RW    +   T  
Sbjct: 344 ENALKDESFLAYLKDET---------------KKKYGYDIKSAVIGSRWNGVEINGYTFD 388

Query: 105 LP-----------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           L              LK  C   ++ + +   EE       F KG+    P D   A H 
Sbjct: 389 LSLASYVLEPAIKEELKYVCTHFDY-DGVQYDEE------VFGKGAKKHIPDDALLAQHT 441

Query: 154 QAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            + +    Y  +DV  T+EL   K+     D E  +  +   +   G  IDLD++ ++ E
Sbjct: 442 VS-KAKAIYELKDV-VTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKEMDE 499

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDL-------VDMSE 258
                    DE I KL++ I R S  T+       L   LF   G+            S+
Sbjct: 500 -------AFDETIEKLSNDIYRISGTTFNISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQ 552

Query: 259 GTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             L+ I+ +H  +  + +  +L +L+S+      L  L E V  D ++  T+     + T
Sbjct: 553 DVLEKIIDAHPVVPLVLEYRMLTKLSST-----YLKGLQEQVFPDNKIH-TIYKQTLTHT 606

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P   RSEE                         +R   ++ NG  LV
Sbjct: 607 GRLSSVDPNLQNIPV--RSEE----------------------GKLIRKAFVSHNGY-LV 641

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE R+LA +A     I AF  G+DI+  T A  F    ++V+ + R+  K +  
Sbjct: 642 SFDYSQIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNF 701

Query: 438 ALGY 441
            + Y
Sbjct: 702 GIIY 705


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L+  +  DGR+         + TGR S      QN+P                     
Sbjct: 586 DGLANYIREDGRIHSKFN-QTITATGRLSSTEPNLQNIP--------------------- 623

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I   LG     +R   I  +G   V AD + IE RVLA  +G+   I+A+   +DI+  T
Sbjct: 624 IRVELG---RLIRKVFIPEDGFVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRIT 680

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            ++ F+ P D+V+ +QR   K +   + Y
Sbjct: 681 ASQVFHIPFDEVTDQQRRNAKAVNFGIVY 709


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 30/159 (18%)

Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           ++ L E V SD GR+         + TGR S      QN+P R E S +I          
Sbjct: 463 VDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRTEFSRQI---------- 511

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                          R   I  +G  LV AD + IE R+LA ++ E   I+A+   +D++
Sbjct: 512 ---------------RKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTNQDVH 556

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
             T    F+   D ++ E+R +GK++   + Y  GA+ F
Sbjct: 557 SLTAKLLFDR--DGITPEERRLGKIINFGVIYGMGAQRF 593


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G   V+AD + IE R+ A   GE   IKAF  G D++  T +       + 
Sbjct: 11  LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYTASILLGKREED 70

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           ++KE+R + K +   L Y   AK     A+  G+DL
Sbjct: 71  ITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDL 106


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G K++ AD + IE R++A ++ ++  + AF +  D++  T A+ F   +  
Sbjct: 690 IRQAFIAPKGYKMLAADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGD 749

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
           V+ +QR   K +   L Y  GA+
Sbjct: 750 VTSDQRRSAKAINFGLIYGMGAQ 772


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 24/128 (18%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR S      QN+P                     +  PLG     +R   +A  G
Sbjct: 567 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEG 602

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P++ V    R   K
Sbjct: 603 FLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAK 662

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 663 TVNFGVLY 670


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L   +  DGR+  +      + TGR S      QN+P + E   E               
Sbjct: 598 LKNVIDEDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGRE--------------- 641

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     VR   + +    +++ AD + IE RVLA IA ++  I AF +  DI+  T
Sbjct: 642 ----------VRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKT 691

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PID+V+   R   K +   + Y  G
Sbjct: 692 ASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIG 723


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R++A ++ ++    AFA GEDI+  T A+ F     +
Sbjct: 702 IRQAFVADPGCKLISADYSQIELRIMAHLSEDERLCAAFAAGEDIHRATAAEVFGVKEVE 761

Query: 424 VSKEQRAIGKVMELALGY 441
           VS  QR   K +   L Y
Sbjct: 762 VSDNQRRAAKAINFGLIY 779


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G  L+ AD + IE R+LA IA      +AFA G+DI+  T ++ F   I+ 
Sbjct: 725 IRTAFIAPKGHMLLSADYSQIELRILAHIADIIALKEAFAQGQDIHAITASQMFGVAIEG 784

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A+  GL  Q+ S  ++
Sbjct: 785 MNSDIRRRAKAINFGIIY--GISAF-GLANQLGLSRQEASHYIQ 825


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 28/149 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L +AV+ DGR+  T     A+ TGR S      QN+P R E    I              
Sbjct: 596 LIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTEFGRRI-------------- 640

Query: 354 ADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   +   G  +L+ AD + IE RV+A ++ +   I+A+  GED++   
Sbjct: 641 -----------REAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQGEDLHNYV 689

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +K F   ID+V+ E R   K M   L Y
Sbjct: 690 GSKVFGVGIDEVTPELRRRVKAMSYGLAY 718


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G K V  D + IE R++A ++ +   + AF+ G+DI+  T A+ F+  +D 
Sbjct: 691 IRQAFIPETGYKYVAVDYSQIELRIMAHLSQDKGLLTAFSEGKDIHRATAAEVFSVELDD 750

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 751 VTSDQRRSAKAINFGLIY 768


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA     +V AD + IE R++A ++ +   +++FA GED++  T A+ F     +
Sbjct: 669 IRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEGEDVHRATAAEIFGMTPGE 728

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ EQR   KV+   L Y   A     +A + GL+
Sbjct: 729 VTSEQRRYAKVINFGLIYGMSA---HGLAKNLGLE 760


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 54/275 (19%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYAL 241
           E+ L  +  ++ + G +ID +++ KL +    E + L++ I K+   +  I S +Q   +
Sbjct: 536 EKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQNLEKKIFKIAKEEFNIGSPKQLGDV 595

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--------- 292
                 I G      S+ T K   +    T +A   +L  LAS G    KL         
Sbjct: 596 IYEKLKIAG------SKKTKKGNFA----TNVA---VLEDLASQGHEFPKLVLNWRQKSK 642

Query: 293 ------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 +TL   +++  +   T     A+ TGR +      QN+P            I+ 
Sbjct: 643 LKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIP------------IKN 690

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +   E            +RS  ++    KL+ AD + IE R+LA +       KAF N E
Sbjct: 691 IEGKE------------IRSAFVSDKNSKLISADYSQIEMRILAHMGDVKELKKAFLNKE 738

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           DI+  T ++ F+  + KV ++ R   K +   + Y
Sbjct: 739 DIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIY 773


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A  G  L+ AD + IE R+LA IA  +   KAFA G DI+  T ++ F  PI+ 
Sbjct: 736 IRTAFVAEKGNLLISADYSQIELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEG 795

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           +    R   K +   + Y  G   F  +A+  G+  Q+  + +
Sbjct: 796 MESSVRRRAKAINFGIIY--GISAF-GLANQLGIPRQEAGEYI 835


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY 785


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%)

Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205
           GE+ +   E    +  LF+ L P LS  E+ LWL  +           +  RG R+D+ L
Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +  L   + +E ++L+ ++ +L       +SR    L   LF   G+  V  +E T K  
Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513

Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
            +   +  L       +LIL     S      L+ L   V    GRL        A+ TG
Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                     +  PLG     +R   +A  G  L+ 
Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461
           + Y   A     ++   G+D ++
Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 684 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 743

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 744 LTNEHRRKAKAINFGIIY 761


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL+ A    GR+  T      + TGR S      QN+P       I T T         
Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G+ ++ AD + IE R++A  +G++  I+AF +  DI+  T
Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     I +V+  +R   K +   L Y
Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%)

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           + +L +AV+  DGR+  T +   A+ TGR S      QN+P R     EI          
Sbjct: 654 VQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGREI---------- 702

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          RS  +   G + L+ +D + +E R++A ++G+D  I+AF +G D 
Sbjct: 703 ---------------RSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADF 747

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +    +  +  P+D ++ +QR   K M   L Y
Sbjct: 748 HKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%)

Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205
           GE+ +   E    +  LF+ L P LS  E+ LWL  +           +  RG R+D+ L
Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +  L   + +E ++L+ ++ +L       +SR    L   LF   G+  V  +E T K  
Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513

Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
            +   +  L       +LIL     S      L+ L   V    GRL        A+ TG
Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                     +  PLG     +R   +A  G  L+ 
Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461
           + Y   A     ++   G+D ++
Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 622 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 669

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 670 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVAS 717

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 718 QVFGVERSAVDAEMRRKIKAMSYGLAY 744


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 57/273 (20%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  T    G + TGR S      QN+P +     
Sbjct: 332 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIPVKTDD-- 383

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G+    +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 384 -------------------GIK---IREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENL 421

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 422 IEAYREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 481

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     ++FE    E  E H                   +  ++ Q    
Sbjct: 482 DASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 541

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           AV   + GTA E++KK    K   VL+  +D+T
Sbjct: 542 AVNTVIQGTAAEVLKKVM-VKVYDVLKDKEDIT 573


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  P+  
Sbjct: 771 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVTG 830

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           +  E R   K +   + Y  G   F  +A+  G+  ++    +K    FE +    ++  
Sbjct: 831 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGTYIK--KYFERFPGIRAYMD 885

Query: 484 WMQDQYPEFAVKDKLIGTACE 504
             +D   E    + L G  C 
Sbjct: 886 ATRDFCREHGYVETLFGRKCH 906


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%)

Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205
           GE+ +   E    +  LF+ L P LS  E+ LWL  +           +  RG R+D+ L
Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +  L   + +E ++L+ ++ +L       +SR    L   LF   G+  V  +E T K  
Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513

Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
            +   +  L       +LIL     S      L+ L   V    GRL        A+ TG
Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                     +  PLG     +R   +A  G  L+ 
Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461
           + Y   A     ++   G+D ++
Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 49  IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 108

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 109 MPGEVRRRAKAINFGIIY 126


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  +  DGR+ G       + TGR S      QN+P R E            L R    
Sbjct: 588 LATFIGPDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +   G   V AD + IE R+LA  +G++  I+A+    DI+  T 
Sbjct: 631 ---------LIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTA 681

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+ P D+V+  QR   K +   + Y
Sbjct: 682 SQVFHVPFDEVTDLQRRNAKAVNFGIVY 709


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 69/299 (23%)

Query: 171 RELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKL 220
           R L KRL      E+ LWL  +           +   G R+D+  +  L   +A+E ++L
Sbjct: 416 RNLLKRL---QGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRL 472

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLI----------TG--------IDLVDMSEGTLK 262
           +E++ +L       + +    R+    +          TG        ++ +  +   ++
Sbjct: 473 EEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVE 532

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            IL H  +T+L K+  ++ L S    ++  NT        GRL        A+ TGR S 
Sbjct: 533 KILQHRELTKL-KNTYVDPLPS----LVHPNT--------GRLHTRFN-QTATATGRLSS 578

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                     +  PLG     +R   +A  G  LV  D +
Sbjct: 579 SDPNLQNIP---------------------VRTPLG---QRIRRAFVAEAGWALVALDYS 614

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    R   K +   + Y
Sbjct: 615 QIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  PI  
Sbjct: 778 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKD 837

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++    +K
Sbjct: 838 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 878


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 24/152 (15%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           + +  L +++++DGR+  +     A+ TGR S      QN+P       + T   +A+ R
Sbjct: 193 VTVEGLVKSIAADGRVHTSFSQTTAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRR 244

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           G                 ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++
Sbjct: 245 G----------------FVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLH 288

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T  ++ F     +V  E R   K M   L Y
Sbjct: 289 TTVASQVFGVERSQVDAEMRRKIKAMSYGLAY 320


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 29/139 (20%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    GA +TGR S      QN+P       I T+       G TI         
Sbjct: 670 GRVHTSYSLVGA-QTGRLSSTDPNLQNIP-------IRTEI------GRTI--------- 706

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R   +  +G  L+ AD + IE R+ A +A  D   +AFANGEDI+  T  + F     
Sbjct: 707 --REAFVPEDGNVLLAADYSQIELRLAAHMADVDTLKEAFANGEDIHARTATEMFG---- 760

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+++ RA  K +  A+ Y
Sbjct: 761 EVTRDTRARAKTINFAILY 779


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS G KLV AD + IE R+L+ +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 790 IRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEG 849

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++    +K
Sbjct: 850 MPSEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 890


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G  L+ AD + IE R++A ++ +     AFA GEDI+  T A+ F   +  
Sbjct: 667 VREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQSAFAAGEDIHRATAAEVFGVALAD 725

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS +QR   K +   L Y  G  VF  +AS+ G+
Sbjct: 726 VSTDQRRAAKAINFGLIY--GMGVFG-LASNLGI 756


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 27/144 (18%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357
           ++ DGR+  T      + TGR S      QN+P R E            L R        
Sbjct: 570 IAEDGRIHSTFN-QTITATGRISSTEPNLQNIPVRME------------LGR-------- 608

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +   G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F
Sbjct: 609 -----LIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQDIHRHTASEVF 663

Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441
           + P D+V+  QR   K +   + Y
Sbjct: 664 HVPFDEVTDLQRRNAKAVNFGIVY 687


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 31/177 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA    K+V  D + IE R++A ++ +   + AF+ G+DI+  T A+ F   + +
Sbjct: 696 IRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVTAFSEGKDIHRATAAEIFAVELGE 755

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ-------FSQNVKSTSTF-EDW 475
           V+ +QR   K +   L Y  G   F  +A    +  QQ       + Q      T+ ED 
Sbjct: 756 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQLHIGRQQAQEYQDKYFQRYPGVLTYMEDT 812

Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKAWRA 512
            Q  S   +++  Y      P+               A+   + GTA +++KKA  A
Sbjct: 813 RQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAINAPMQGTAADIIKKAMLA 869


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           LS+ V  DG++  T+     ++TGR S      QN+  R E  +EI              
Sbjct: 578 LSKHVLKDGKIH-TIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEI-------------- 622

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      R   +AS G  L+ AD + IE R+LA +A E+  I AF +G DI+  T 
Sbjct: 623 -----------RKAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTA 671

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + F+   D V    R   K +   + Y
Sbjct: 672 MQIFDVDHDSVDANMRRSAKTVNFGIVY 699


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKK+V  D + IE R++A ++G+     AF  G DI+  T A+ +   +D+
Sbjct: 717 IRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTDAFEQGLDIHRATAAEVWGKTLDE 776

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS   R   K +   L Y  G   F  +A   GL
Sbjct: 777 VSDNDRRNAKAINFGLIY--GMSAF-GLAKQLGL 807


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 120/304 (39%), Gaps = 58/304 (19%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           Y   D + T +L  +L+PL + E++L  + +       +I++ LV  L ++   E + + 
Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMQM---EMRGVL 520

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265
            D   L    I    +   L    + + G +    S   L++IL                
Sbjct: 521 VDTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580

Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
             +  N+ Q LA D  L ++     ++ KL T     L   V    R   T      + T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P   R+EE                         +R   IA  G ++V
Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E R++A I+ +   IKAF    DI+  T A+ F   +++V+ EQR   K +  
Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGY 441
            L Y
Sbjct: 737 GLLY 740


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + TL ++V+ D R+  T      + TGR S      QN+P   RSEE             
Sbjct: 592 VETLKKSVADDARIHTTYA-QNIAATGRISSNNPNLQNIPV--RSEE------------- 635

Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       VRS  + S G + L+ AD + IE R++A ++G+   I+A+ +GED++ 
Sbjct: 636 ---------GRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHR 686

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              A+ FN    +V+   R+  K M   L Y
Sbjct: 687 FVGARIFNVEPAEVTSAMRSKVKAMSYGLAY 717


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  P++ 
Sbjct: 738 IRKAFIAAPGHKLVSADYSQIELRLLAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEG 797

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 798 MPGEVRRRAKAINFGIIY 815


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/447 (19%), Positives = 171/447 (38%), Gaps = 67/447 (14%)

Query: 6    IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQYLRD 63
            +DIET         G+  + E+  I L   A ++ PV ++D     + ++ + L + L++
Sbjct: 1314 LDIET--------TGLEVFDEK--IRLIQIAVENYPVIIYDMFNITKESILTGLREILKN 1363

Query: 64   ETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
            E V+ +  N  F+ + L      +D     +I + +L +   +     N  +    +  L
Sbjct: 1364 EKVVKIIQNGKFDAKFLMHNNFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTL 1423

Query: 123  TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLS 181
             K ++           +        +        +L  E CK ++E   ++  + ++P+ 
Sbjct: 1424 DKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMETVNDIENKCILPIC 1483

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E +           G  +DL+ + K   E++++   +  +   +L D  I  + Q   
Sbjct: 1484 DMELN-----------GITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQV 1532

Query: 241  LRMY----LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL--KLNT 294
            L+      +  I+   + + S+  LK+ L+H  +  L     L +L S+    L   +N 
Sbjct: 1533 LKALQNNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRRLYKLYSAFYLKLPQHINK 1592

Query: 295  LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +  + +      T        +GR+S      Q +PRQ+                    
Sbjct: 1593 KTNKIHTTFNQLKTF-------SGRFSSEKPNLQQIPRQKN------------------- 1626

Query: 355  DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     +R   I       ++AD   IE ++ A I  +D  +KA+ N  D++  T +
Sbjct: 1627 ---------IREIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTAS 1677

Query: 415  KAFNTPIDKVSKEQRAIGKVMELALGY 441
                 PI  V+KE R I K +   L Y
Sbjct: 1678 IITKKPIADVNKEDRHIAKAINFGLIY 1704


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 36/257 (14%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITG 250
            +  RG R+DLD + +    + +E   L+E+I ++     +I+S  Q  A+   LF    
Sbjct: 502 AMETRGIRVDLDFLQRFGREVEKELASLEEEIHEMAGEPFLIQSPPQLAAI---LFDRLQ 558

Query: 251 IDLVDMSEGTLKSILSHSNITQLA------KDLILNRLASSGSAILKLNTLSEAVSSDGR 304
           +     ++G       +  +T LA        +I  R      A        +   + GR
Sbjct: 559 LPTQKKTKGRTAYSTDNEVLTALADYHPIAAKVIAYRTLGKLKATYVDGLCKQVHPASGR 618

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  T      + TGR S      QN+P                 RGE  A         +
Sbjct: 619 IHTTF-VQSVAATGRLSSRDPNLQNIP----------------VRGELGAQ--------L 653

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   + S+G   +  D + IE R+LA  + +   ++AF  GED++  T A+ F    + V
Sbjct: 654 RQAFLPSSGYIFISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELV 713

Query: 425 SKEQRAIGKVMELALGY 441
           S+E R   KV+   + Y
Sbjct: 714 SREMRRQAKVINFGIIY 730


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L +   S  RL  T    G + TGR S      QN+P          +T + +    
Sbjct: 620 VDALPKLADSRDRLHTTFNQIGTT-TGRLSSSNPNLQNIP---------VKTDEGMK--- 666

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   IA NG  L+  D + IE RVLA ++ ++  I A+ N ED++  
Sbjct: 667 ------------IRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRV 714

Query: 412 TYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441
           T  K F     ++VS+EQR I K +  ++ Y
Sbjct: 715 TAKKIFELEDGEEVSREQRIIAKTINFSIIY 745


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 38/182 (20%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+++++H + T+L +                +  L E V+ D R+  T     A+ TGR 
Sbjct: 630 LENLMAHRDATKLRQ---------------TVEGLLETVAPDDRIHTTYSQTAAA-TGRL 673

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E    I         R   +AD             +A     L+ A
Sbjct: 674 SSLHPNLQNIPVRTEAGRRI---------REVFVADE------------VAGEQAVLLSA 712

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++ F    D+V+ EQRA  K M   L
Sbjct: 713 DYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGL 772

Query: 440 GY 441
            Y
Sbjct: 773 AY 774


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASD---CVRSCIIASNGKKLVVADLAG 383
           PR  R      QT+ +  R  + +DP    + + SD    +R   IA  G  ++ AD + 
Sbjct: 615 PRTGRVHTSYNQTVTSTGRLSS-SDPNLQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQ 673

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++G+    +AF + EDI+  T ++ F    + V+ E R   K +   + Y  
Sbjct: 674 IELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQ 733

Query: 444 GA 445
           G+
Sbjct: 734 GS 735


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G +L+ AD + IE R+LA ++GE+  ++A+  G+D++  T         D+
Sbjct: 765 IRKAFLPEAGWQLISADYSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLLLEK--DE 822

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           VS ++R +GK +   + Y  GA+ F
Sbjct: 823 VSADERRLGKTINFGVIYGMGAQRF 847


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A +G  LV AD + IE R++A ++ +    +AFA G+DI+  T ++ F   +D+
Sbjct: 710 VREAFVAEHGV-LVSADYSQIELRIMAHVSDDANLQQAFAAGKDIHRATASEIFGVALDE 768

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V  +QR   K +   L Y  G  VF  +AS+ G+
Sbjct: 769 VGADQRRAAKAINFGLIY--GMGVFG-LASNLGI 799


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A       AF NG DI+  T ++ F  P++ 
Sbjct: 755 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEG 814

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 815 MPSEVRRRAKAINFGIIY 832


>gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR+  +AS G+ +V AD + IE RV+A ++ ++   +AF  G+DI+  T A+ F     +
Sbjct: 622 VRAAFVASGGQ-IVSADYSQIELRVMAHVSDDENLRQAFERGDDIHQATAAEVFGAAQAE 680

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           VS EQR   K +   L Y  G
Sbjct: 681 VSAEQRRAAKAINFGLIYGMG 701


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++ G KL+ AD + IE RVLA +A       AF NG DI+  T ++ F  P++ 
Sbjct: 752 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEG 811

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 812 MPSEVRRRAKAINFGIIY 829


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 32/156 (20%)

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   + E +  D RL    +  GA  TGR S      QN+PR+ER+              
Sbjct: 296 KFKEIKENLKGD-RLYPEFKQIGAV-TGRMSSLKPNVQNVPREERA-------------- 339

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                              A  G   V+AD + IE R+ A    E+  I+AF  G+D++ 
Sbjct: 340 ----------------IFKAPEGNTFVIADFSQIELRIAAEYVNEELMIRAFREGKDLHR 383

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
            T +       ++++KE+R + K +   L Y   AK
Sbjct: 384 YTASLVLGKREEEITKEERQLAKAINFGLIYGISAK 419


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 27/140 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  +      + TGR S      QN+P R E   EI                      
Sbjct: 650 GRIHASFN-QTVTATGRLSSSEPNLQNIPVRGEEGREI---------------------- 686

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R+  IA  G  L+ AD + IE R+LA  + +   ++AF N +DI+  T  K ++   
Sbjct: 687 ---RNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSK 743

Query: 422 DKVSKEQRAIGKVMELALGY 441
           + V+   R I K++  ++ Y
Sbjct: 744 EHVTASMRNIAKIINFSIIY 763


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA     +V AD + IE R++A ++ +   ++AFA GED++  T  + F     +
Sbjct: 700 IRAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAFARGEDVHRATAGEVFGVAPAE 759

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   KV+   L Y
Sbjct: 760 VTSEQRRYAKVINFGLIY 777


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%)

Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205
           GE+ +   E    +  LF+ L P LS  E+ LWL  +           +  RG R+D+ L
Sbjct: 398 GEFTEDAAERALLSERLFQTLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +  L   + +E ++L+ ++ +L       +SR    L   LF   G+  V  +E T K  
Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LEKVLFDELGLTPVGRTEKTGKRS 513

Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
            +   +  L       +LIL     S      L+ L   V    GRL        A+ TG
Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                     +  PLG     +R   +A  G  L+ 
Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461
           + Y   A     ++   G+D ++
Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +AS G  L+ AD + IE R+LA +A      +AFA G+DI+  T ++ F   ++ 
Sbjct: 725 IRAAFVASKGHLLLSADYSQIELRILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEG 784

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ E R   K +   + Y  G   F  +AS  G+  ++ S  ++
Sbjct: 785 MTSEIRRRAKAINFGIIY--GISPF-GLASQLGISRKEASDYIQ 825


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A+ G +++ AD + +E R+LA IA      +AFA G DI+  T +  F  P+  
Sbjct: 714 IRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAEGVDIHAATASDMFGVPVGA 773

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           V  E R   K +   + Y  G   F  +A   G+  Q+ ++ +
Sbjct: 774 VPGELRRRAKTINFGIVY--GISAFG-LADRLGIGRQEAAEFI 813


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 121/309 (39%), Gaps = 72/309 (23%)

Query: 162 YCKRDVEATRELFKRLIPL--SDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+  L P   SDG        +R L  +   +   G  +D   +  L  
Sbjct: 489 YAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSS 548

Query: 212 LIAQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
             A +  +L+E+I  L     +I S +Q   L   LF   G+     S    KS    +N
Sbjct: 549 RFAHDISRLEEEIYALAGCRFLISSPKQ---LGEVLFGTMGLAGGKKS----KSGQYSTN 601

Query: 270 ITQLAKDLILNRLASSG----SAILKLNTLSEAVSS------------DGRLRGTLQFYG 313
           +T+L       RLA+ G    S IL+   LS+  S+             GR+  +    G
Sbjct: 602 VTEL------ERLAAEGEVIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVG 655

Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           A +TGR S      QN+P R E   EI                         R+  IA  
Sbjct: 656 A-QTGRLSSTDPNLQNIPIRTEIGREI-------------------------RNAFIAKK 689

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  L+ AD + IE R+ A +A E   ++AF   EDI+  T  + F      V +E RA  
Sbjct: 690 GHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARA 745

Query: 433 KVMELALGY 441
           K +  A+ Y
Sbjct: 746 KTINFAILY 754


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 24/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GRL  T      + TGR S      QN+P +             L  G  I         
Sbjct: 605 GRLHSTFH-QTVTATGRLSSAEPNLQNIPIR-------------LETGRKIR-------- 642

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             +  I    G  ++ AD + IE RVLA ++ ++  + AF  G+DI+  T ++ F  P+D
Sbjct: 643 --KVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFGVPMD 700

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E R+  K +   + Y
Sbjct: 701 QVTSEMRSRAKAVNFGIVY 719


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   GK  + AD + I+ RVLA  +G+D   +AFA G+DI+  T A+ F+     
Sbjct: 652 IRRAFVPEAGKVFLAADYSQIDLRVLAHYSGDDALTRAFAAGQDIHARTAAELFSVSTML 711

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R + K +   + Y
Sbjct: 712 VNPEMRRVAKSINFGIVY 729


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 685 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 744

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 745 LTSEHRRKAKAINFGIIY 762


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 38/182 (20%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+++++H + T+L +                +  L E V+ D R+  T     A+ TGR 
Sbjct: 630 LENLMAHRDATKLRQ---------------TVEGLLETVAPDDRIHTTYSQTAAA-TGRL 673

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E    I         R   +AD             +A     L+ A
Sbjct: 674 SSLHPNLQNIPVRTEAGRRI---------REVFVADE------------VAGEQAVLLSA 712

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    ++ F    D+V+ EQRA  K M   L
Sbjct: 713 DYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGL 772

Query: 440 GY 441
            Y
Sbjct: 773 AY 774


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +A+  DGR+  T Q   A+ TGR S      QN+P   R EE +              
Sbjct: 660 LRKAIQPDGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARHEEGMR------------- 703

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R       G + L+ AD + IE R++A ++ +   I AF +GED++    
Sbjct: 704 ---------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIDAFRSGEDLHRYVA 754

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           A      ++ V+ +QR+  K M   L Y  G   F  +A   G+D
Sbjct: 755 ALVHGIDVEDVTAQQRSHVKAMSYGLAY--GLSTFG-LARQLGID 796


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  P++ 
Sbjct: 777 IRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEG 836

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+   +  Q +K
Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAFG-LANQLGIPRDEAGQYIK 877


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS  +   G   + AD + IE  VLA +A +     AFA G D++ +T +  F+ P+D+
Sbjct: 709 IRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVHSSTASLIFDVPLDQ 768

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           V+  QR I K +   + Y  G    A   K   S     + Q+ +   S  +F
Sbjct: 769 VTPVQRRIAKTINFGVMYGMGTHSLAMDLKIPHSEAKQFIDQYFERYSSVRSF 821


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    G + TGR S      QNLP   +SEE                        
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654

Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R  I+  +    +V AD + IE R+LA ++G++  ++AF  G D++  T ++ FN   
Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V++E R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 635 IRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQIFNLQKHE 694

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 695 LTSEHRRKAKAINFGIIY 712


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + ++  + AF +G+D++  T A+     I+ 
Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDEALVHAFQHGQDVHRRTAAEVLGIAIED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTNDQRRQAKAVNFGLLY 763


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L+  +  DGR+  T      + TGR S      QN+P                     
Sbjct: 593 DGLAGYIGEDGRIHSTFH-QTITATGRISSTEPNLQNIP--------------------- 630

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I   LG     +R   +   G   + AD + IE RVLA ++G++  I+A+   +DI+  T
Sbjct: 631 IRMELG---RLIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLT 687

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            ++ F+TP ++V+  QR   K +   + Y
Sbjct: 688 ASQVFHTPFEEVTDLQRRNAKAVNFGIVY 716


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    G + TGR S      QNLP   +SEE                        
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654

Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R  I+  +    +V AD + IE R+LA ++G++  ++AF  G D++  T ++ FN   
Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V++E R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DGR+  +      + TGR S      QN+P   R E         L R         
Sbjct: 651 IAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPM--RIE---------LGR--------- 689

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+
Sbjct: 690 ----LIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFH 745

Query: 419 TPIDKVSKEQRAIGKVMELALGY 441
            P D+V+  QR   K +   + Y
Sbjct: 746 IPFDEVTDLQRRNAKAVNFGIVY 768


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +
Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 698 LTSEHRRKAKAINFGIIY 715


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 31/159 (19%)

Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
           I KLN+     L   + SDG +  +      + TGR S      QN+P + E   EI   
Sbjct: 575 ITKLNSTYVEGLKNVIDSDGHIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREI--- 630

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                 R   I D  G   D + SC            D + IE RVLA ++ ++  I AF
Sbjct: 631 ------RKVFIPDEEG---DILLSC------------DYSQIELRVLAHMSNDENMIDAF 669

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            +  DI+  T ++ F  PI+ V+   R+  K +   + Y
Sbjct: 670 KHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVY 708


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 603 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 650

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 651 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAS 698

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 699 QVFAVEPTAVDAEMRRKIKAMSYGLAY 725


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GK+L+ AD + IE R++A +A  +    AFA+G DI+  T ++ F  P+D 
Sbjct: 687 IRHAFVAEPGKRLISADYSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVFGVPLDG 746

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 747 MDSALRRRAKAINFGIIY 764


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DGR+  +      + TGR S      QN+P   R E         L R         
Sbjct: 651 IAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPM--RIE---------LGR--------- 689

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+
Sbjct: 690 ----LIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFH 745

Query: 419 TPIDKVSKEQRAIGKVMELALGY 441
            P D+V+  QR   K +   + Y
Sbjct: 746 IPFDEVTDLQRRNAKAVNFGIVY 768


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DGR+  +      + TGR S      QN+P   R E         L R         
Sbjct: 647 IAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPM--RIE---------LGR--------- 685

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+
Sbjct: 686 ----LIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFH 741

Query: 419 TPIDKVSKEQRAIGKVMELALGY 441
            P D+V+  QR   K +   + Y
Sbjct: 742 IPFDEVTDLQRRNAKAVNFGIVY 764


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 28/149 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L E V  DGRLR +      + TGR S      QN+P R    +EI              
Sbjct: 652 LPELVYPDGRLRTSYN-QAVTVTGRLSSSDPNLQNIPIRSAMGQEI-------------- 696

Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      RS  +  + +   + AD + IE R++A  + ++  IKAF  GED++ +T
Sbjct: 697 -----------RSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKAFVEGEDVHRST 745

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+ +N   ++V+  QR+  K     + Y
Sbjct: 746 AARIYNVAPEEVTPLQRSHAKTANFGIIY 774


>gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 60

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           R  TYGGKL ENIVQA++RD+L   M    + G+ IV+ V DE V
Sbjct: 4   RLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDEPV 48


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 30/159 (18%)

Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           ++ L E V SD GR+         + TGR S      QN+P R E S +I          
Sbjct: 672 VDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRTEFSRQI---------- 720

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                          R   I  +G  LV AD + IE R+LA ++ E   I+A+   +D++
Sbjct: 721 ---------------RKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTNQDVH 765

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
             T    F+   D ++ E+R +GK++   + Y  GA+ F
Sbjct: 766 SLTAKLLFDR--DGITPEERRLGKIINFGVIYGMGAQRF 802


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G KLV AD + IE R+L+ +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 784 IRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 843

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++    +K
Sbjct: 844 MPSEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 884


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    G + TGR S      QNLP   +SEE                        
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654

Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R  I+  +    +V AD + IE R+LA ++G++  ++AF  G D++  T ++ FN   
Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V++E R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344
           KLN+     L + +  DGR+        A RTGR S      QN+P R E   ++     
Sbjct: 567 KLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIPIRTEMGSKL----- 620

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               R+  +A  G  LV AD + IE R+LA + G+    +AF +
Sbjct: 621 --------------------RAYFVAKPGCVLVDADYSQIELRILAHVTGDAHMQEAFLS 660

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           G DI+ +T AK +N   + V+   R+  K +   + Y  GA
Sbjct: 661 GADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGA 701


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 72/176 (40%), Gaps = 36/176 (20%)

Query: 282  LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            L ++G A L  N L E                   TGR S      QNLPR       +T
Sbjct: 963  LPATGYATLHPNFLQEGTD----------------TGRLSCVEPNLQNLPRNG-----IT 1001

Query: 342  QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
             T +         D LG      R C +A+ G  L+  D   IE RVLA + G+   +KA
Sbjct: 1002 STEEE-----GEEDLLGF-----RRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKA 1051

Query: 402  FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
              +  DI+ T     F      VS E+R++ K +   + Y  G    KT+A+H G+
Sbjct: 1052 LTSSADIHQTIAEVVFKK--KPVSTEERSLAKRVVFGVLYGAGP---KTLATHMGV 1102


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+ AD + IE R+LA +A       AFA GEDI+  T A  F    DK
Sbjct: 729 IRRAFVAEPGHVLLAADYSQIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDK 788

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V KE R   K +   + Y  G   F  +A+  G+
Sbjct: 789 VDKEARRRAKTINFGIIY--GMSAFG-LAARLGI 819


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 181/453 (39%), Gaps = 86/453 (18%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           ++LCA       + L +  E++  + S L + ++DE V+ VAHN+ F+  +  +     +
Sbjct: 378 MSLCADEKQAYFIPLPESAEEATHILSPLKELMQDERVLKVAHNAKFDLEVLTR---YGL 434

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           P  R +  ++LA                    +L   ++G +L      G +    YD  
Sbjct: 435 PEARPLYDTMLAH-------------------YLIDADQGHSL-DELAGGLLR---YDTI 471

Query: 149 RANHVQAWQLFG-----------EYCKRDVEATRELF----KRLIP-----LSDGERDLW 188
           R   +   ++F            +Y   D   T  L+    K+L P     L++ E  L 
Sbjct: 472 RYKDLSPLEIFALRTDVDPKLLCDYASEDAYVTLRLYQALHKQLSPTEQRLLTEVEIPLL 531

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +  RG  +D+       E + + R++L E +++L   I   S +   L++     
Sbjct: 532 YVLMHMEQRGIVLDI-------EALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQ 584

Query: 249 TG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNT---- 294
            G    D + + E   K+  + S +T     L L  L    + IL        LNT    
Sbjct: 585 IGELLFDELQIMEKPRKT-KTGSYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDP 643

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +    DG+L  +      + TGR S      QN+P       I +   + L R   +A
Sbjct: 644 LPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIP-------IRSDLGRPLRRA-FVA 694

Query: 355 DPLGLASDCVRSCIIASN------GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           DP    +  + +C    +      G  L+ AD + +E RV+A ++ +   I +F +G+DI
Sbjct: 695 DPY--YTPRLSACAPVDHTHEKPIGAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDI 752

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  T AK F    ++V+   R+  K     + Y
Sbjct: 753 HTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 122/309 (39%), Gaps = 72/309 (23%)

Query: 162 YCKRDVEATRELFKRLIPL--SDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+  L P   SDG        +R L  +   +   G  +D   +  L  
Sbjct: 489 YAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSS 548

Query: 212 LIAQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
             A +  +L+E+I  L     +I S +Q   L   LF   G+     S    KS    +N
Sbjct: 549 RFAHDISRLEEEIYVLAGCRFLISSPKQ---LGEVLFGTMGLAGGKKS----KSGQYSTN 601

Query: 270 ITQLAKDLILNRLASSGSAIL----------KL-NTLSEAV-----SSDGRLRGTLQFYG 313
           +T+L       RLA+ G AI           KL +T S+A+        GR+  +    G
Sbjct: 602 VTEL------ERLAAEGEAIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVG 655

Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           A +TGR S      QN+P R E   EI                         R+  IA  
Sbjct: 656 A-QTGRLSSTDPNLQNIPIRTEIGREI-------------------------RNAFIAKK 689

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  L+ AD + IE R+ A +A E   ++AF   EDI+  T  + F      V +E RA  
Sbjct: 690 GHLLLSADYSQIELRLAAHVADEKALLQAFREKEDIHALTAKQLFG----HVDRESRARA 745

Query: 433 KVMELALGY 441
           K +  A+ Y
Sbjct: 746 KTINFAILY 754


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V
Sbjct: 397 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 456

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   KV+   + Y
Sbjct: 457 TPEMRRAAKVVNFGIIY 473


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G+ +V AD + IE R++A ++ +   + AF    D++  T A+ F  P++ 
Sbjct: 670 IRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLGAFGANLDVHSATAAEVFGVPLED 729

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 730 VSSDQRREAKAINFGLIY 747


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R C +    G K + AD + IE R+LA ++ ++  + AF +G D +  T ++ F  P++
Sbjct: 635 IRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVE 694

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 695 DVTPELRSRAKAVNFGIVY 713


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G +   AD + IE R++A ++ +   I+AF   +DI+  T AK +   +++
Sbjct: 692 IRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEAFQKDQDIHAATAAKIYKVKLEE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V++EQR+  K     + Y  G  VF
Sbjct: 752 VTREQRSKAKTANFGIIY--GISVF 774


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 120/304 (39%), Gaps = 58/304 (19%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           Y   D + T +L  +L+PL + E++L  + +       +I++ LV  L ++   E + + 
Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMQM---EMRGVL 520

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265
            D   L    I    +   L    + + G +    S   L++IL                
Sbjct: 521 VDTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580

Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
             +  N+ Q LA D  L ++     ++ KL T     L   V    R   T      + T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P   R+EE                         +R   IA  G ++V
Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E R++A ++ +   IKAF    DI+  T A+ F   +++V+ EQR   K +  
Sbjct: 677 AADYSQVELRIIAHVSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGY 441
            L Y
Sbjct: 737 GLLY 740


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +    GA+ TGR +      QN+P   R+EE                        
Sbjct: 657 GRVHTSYSITGAN-TGRLASTDPNLQNIPV--RTEE----------------------GR 691

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +A  G  L+  D + IE R+LA IA      +AFA+G DI+  T ++ F+ P+D
Sbjct: 692 RIREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLD 751

Query: 423 KVSKEQRAIGKVMELALGY 441
           +++ E R   K +   + Y
Sbjct: 752 QMTPEVRRRAKAINFGVIY 770


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R+  K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 28/141 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GRL  TL     + TGR S      QN+P R E    I                      
Sbjct: 589 GRLHTTLH-QTVTNTGRLSSAEPNLQNIPIRMEEGRRI---------------------- 625

Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              R   I  +  + L+ AD + IE R+LA ++G+   I AF + +DI+  T A+ F  P
Sbjct: 626 ---RKVFIPRDPARVLLTADYSQIELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVP 682

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           ++ V+ E R+  K +   + Y
Sbjct: 683 LEMVTPEMRSRAKAVNFGIIY 703


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 62/313 (19%)

Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209
           YC  DV  TR L             +L+PL +G E+ L  +   +   G RID+  +  L
Sbjct: 549 YCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTL 608

Query: 210 QELIAQERKKLDEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM--------SEG 259
            + +     +L+ +   V   D  + S +Q   L   LF   G+D            ++ 
Sbjct: 609 SDELGSTLNRLETEAKQVAEVDFNLASPKQ---LGELLFDTLGLDRKKSRRTKTGFSTDA 665

Query: 260 TLKSILSHSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASR 316
           T+   L H +  +  + +  +L++L S+      ++ L + V ++ GR+         + 
Sbjct: 666 TVLEKLEHDHPVVPLVLEHRVLSKLKST-----YVDALPQLVEAETGRVHTDFN-QAVTA 719

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R E S  I                         R   +   G  
Sbjct: 720 TGRLSSSNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWT 754

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R+L  ++GE+   +A+  G+D++  T     +   D+VS +QR +GK +
Sbjct: 755 LLSADYSQIELRILTHLSGEEVLQEAYRTGDDVHALTARLLLDK--DEVSADQRRLGKTI 812

Query: 436 ELALGYQGGAKVF 448
              + Y  GA+ F
Sbjct: 813 NFGVIYGMGAQRF 825


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +GKKL+ AD + IE R+LA +A      +AF  G+DI+  T ++ FN P++ 
Sbjct: 725 IRQAFIAPSGKKLISADYSQIELRLLADVANIPALREAFQLGQDIHARTASEVFNIPLEG 784

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 785 MDALTRRRAKAINFGIIY 802


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   L++L S+    L  N ++E     GR+        A+ TGR S     
Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +     KL+ AD + IE
Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F    +++S E+R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EQISSEERRVGKTINFGVIYGMGI 800

Query: 446 KVF 448
           K F
Sbjct: 801 KKF 803


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA     LV AD +  E R+ A +AG++  I  F N  DI+  T +  +  P+D+
Sbjct: 101 IRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQ 160

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   KV+   + Y
Sbjct: 161 VTSNQRRNAKVINFGVLY 178


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 63/262 (24%)

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI----------------------VK 226
           +LD  I  +G ++DLDL  KL     Q++ +++E +                       +
Sbjct: 276 VLDMEI--KGIKLDLDLNKKLSAKYRQKKAEVEEKLKIEFNKYDKEFKEFKIKHPDLASR 333

Query: 227 LTDGI-IRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLILNRLA 283
           L++ I I S +Q   L ++ + + G+  VD  +  GT   IL   ++  +AK ++  R  
Sbjct: 334 LSNPINISSPKQ---LGIFFYDMLGLKPVDREKPRGTGADILGKFDVP-VAKLILEYREL 389

Query: 284 SS--GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
               G+ I KL T+    +  G++  T   YG + TGR+S      QN+P   +      
Sbjct: 390 DKLLGTYIDKLPTVLSKRT--GKIHCTFNQYG-TVTGRFSSDSPNLQNIPSHNKD----- 441

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I  +G  L+  D +  E R LA ++G++  IKA
Sbjct: 442 ----------------------IRKMFIPDDGNILIGGDYSQQEPRSLAHMSGDEKMIKA 479

Query: 402 FANGEDIYVTTYAKAFNTPIDK 423
           + NG+DIY T  +  +  P ++
Sbjct: 480 YKNGKDIYATIASYVYKVPYEE 501


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V
Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   KV+   + Y
Sbjct: 693 TPEMRRAAKVVNFGIIY 709


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ I  +    +V AD + IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V
Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   KV+   + Y
Sbjct: 693 TPEMRRAAKVVNFGIIY 709


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +AS G  L+ AD + IE R+LA IA      KAFA+G DI+  T ++ F  P+  
Sbjct: 753 IRKAFVASPGHVLISADYSQIELRLLAHIADIPQLKKAFADGIDIHAMTASEMFGVPVKD 812

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 813 MPPEVRRRAKAINFGIIY 830


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L + V S  RL  T    G + TGR S      QN+P          +T + +    
Sbjct: 621 VDALPKLVDSKDRLHTTFNQIGTT-TGRLSSSNPNLQNIP---------VKTDEGMK--- 667

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   IA +G  L+  D + IE RVLA ++ ++  I A+ N ED++  
Sbjct: 668 ------------IRQGFIADSGNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRV 715

Query: 412 TYAKAFNT-PIDKVSKEQRAIGKVMELALGY 441
           T  K F     ++VS+EQR I K +  ++ Y
Sbjct: 716 TAKKIFELGEGEEVSREQRIIAKTINFSIIY 746


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I  +G     AD + IE R++A ++ ++  ++AF  G DI+  T AK ++  IDK
Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIWHVDIDK 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDAQRKKAKQANFGIIY 758


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 120/304 (39%), Gaps = 58/304 (19%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           Y   D + T +L  +L+PL + E++L  + +       +I++ LV  L ++   E + + 
Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMKM---EMRGVL 520

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265
            D   L    I    +   L    + + G +    S   L++IL                
Sbjct: 521 VDTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580

Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
             +  N+ Q LA D  L ++     ++ KL T     L   V    R   T      + T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P   R+EE                         +R   IA  G ++V
Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E R++A I+ +   IKAF    DI+  T A+ F   +++V+ EQR   K +  
Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGY 441
            L Y
Sbjct: 737 GLLY 740


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 356 PLGL-ASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
           P+ L  S  +R   I S+   L++ AD + IE RVLA I  ++  I AF N EDI+ +T 
Sbjct: 645 PIKLEMSRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTA 704

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           A  F  P ++V+   R+  K +   + Y  G
Sbjct: 705 ASVFGIPKEEVTPLMRSRAKAVNFGIVYGIG 735


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R+  K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 49/289 (16%)

Query: 171 RELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKL 220
           R L KRL      E+ LWL  +           +   G R+D+  +  L   +A+E ++L
Sbjct: 416 RNLLKRL---EGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRL 472

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL--AKDL 277
           +E++ +L       +SR    L   LF    +  +  ++ T K   S + +  L  A  +
Sbjct: 473 EEEVFRLAGHPFNLNSRDQ--LERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPI 530

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +   L       LK NT  + + S      GRL        A+ TGR S      QN+P 
Sbjct: 531 VEKILQHRELTKLK-NTYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP- 587

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                               +  PLG     +R   +A  G  LV  D + IE RVLA +
Sbjct: 588 --------------------VRTPLG---QRIRRAFVAEAGWALVALDYSQIELRVLAHL 624

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +G++  I+ F  G+DI+  T +  F  P + V    R   K +   + Y
Sbjct: 625 SGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +     KL+ AD + IE R+L  ++GE+   +AF NG+D++  T     +   D+
Sbjct: 731 IRKAFLPQENWKLLSADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLLLDK--DE 788

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           VS+++R +GK +   + Y  GA+ F
Sbjct: 789 VSEDERRLGKTINFGVIYGMGAQRF 813


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G +LV AD + IE R++A +A +   + AF N  D++  T A+ F    + 
Sbjct: 669 IRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRATAAEVFGVAPEA 728

Query: 424 VSKEQRAIGKVMELALGY 441
           VS +QR   K +   L Y
Sbjct: 729 VSADQRRSAKAINFGLIY 746


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 621 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGEGFD 655

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF +G+DI+  T A+      D+V+ E+R+  K 
Sbjct: 656 TLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 715

Query: 435 MELALGY 441
           +   + Y
Sbjct: 716 VNFGIIY 722


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T ++ F  P+  
Sbjct: 767 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVQG 826

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++ +  +K
Sbjct: 827 MPGEIRRRAKAINFGIIY--GISAFG-LANQLGIPREEAAAYIK 867


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G ++V AD + +E R++A I+ +   IKAF    DI+  T A+ F   +++
Sbjct: 663 IRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQ 722

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 723 VTPEQRRRAKAINFGLLY 740


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 49/289 (16%)

Query: 171 RELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKL 220
           R L KRL      E+ LWL  +           +   G R+D+  +  L   +A+E ++L
Sbjct: 416 RNLLKRL---EGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRL 472

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL--AKDL 277
           +E++ +L       +SR    L   LF    +  +  ++ T K   S + +  L  A  +
Sbjct: 473 EEEVFRLAGHPFNLNSRDQ--LERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPI 530

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +   L       LK NT  + + S      GRL        A+ TGR S      QN+P 
Sbjct: 531 VEKILQHRELTKLK-NTYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP- 587

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                               +  PLG     +R   +A  G  LV  D + IE RVLA +
Sbjct: 588 --------------------VRTPLG---QRIRRAFVAEAGWALVALDYSQIELRVLAHL 624

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +G++  I+ F  G+DI+  T +  F  P + V    R   K +   + Y
Sbjct: 625 SGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G  +  AD + IE R++A ++G+   + AF +G D++  T ++ F  P   
Sbjct: 685 VREAFIAPPGCLIASADYSQIELRIMAHLSGDAALLLAFHDGMDVHRATASEVFGVPTSA 744

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 745 VTSEQRRYAKTINFGLIY 762


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R+  K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R+  K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 614 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGTGYD 648

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D+V+ E+R+  K 
Sbjct: 649 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 INFGIIY 715


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S+   L++ AD + IE RVLA I  ++  I AF N EDI+ +T A  F  P +
Sbjct: 654 IRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKE 713

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
           +V+   R+  K +   + Y  G
Sbjct: 714 EVTPLMRSRAKAVNFGIVYGIG 735


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L ++++ DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 629 LIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 676

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I AF +GED++ T   
Sbjct: 677 ------------FVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 724

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             FN     V  E R   K M   L Y
Sbjct: 725 YVFNVEPTAVDAEMRRKIKAMSYGLAY 751


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 127/313 (40%), Gaps = 62/313 (19%)

Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209
           YC  DV  TR L             +L+PL +G E+ L  +   +   G RID+  +  L
Sbjct: 549 YCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTL 608

Query: 210 QELIAQERKKLDEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLK 262
            + +     +L+ D   V   D  + S +Q   L   LF   G+D            T  
Sbjct: 609 SDELGSTLNRLETDAKQVAEVDFNLASPKQ---LGELLFDTLGLDRKKSRRTKTGFSTDA 665

Query: 263 SILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASR 316
           ++L      H  +  + +  +L++L S+      ++ L + V ++ GR+         + 
Sbjct: 666 TVLEKLENDHPVVPLVLEHRVLSKLKST-----YVDALPQLVEAETGRVHTDFN-QAVTA 719

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R E S  I                         R   +   G  
Sbjct: 720 TGRLSSSNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWT 754

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R+L  ++GE+   +A++ G+D++  T     +   D VS ++R +GK +
Sbjct: 755 LLSADYSQIELRILTHLSGEEVLQEAYSTGDDVHALTARLLLDK--DDVSADERRLGKTI 812

Query: 436 ELALGYQGGAKVF 448
              + Y  GA+ F
Sbjct: 813 NFGVIYGMGAQRF 825


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 121/309 (39%), Gaps = 72/309 (23%)

Query: 162 YCKRDVEATRELFKRLIPL--SDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+  L P   SDG        +R L  +   +   G  +D   +  L  
Sbjct: 489 YAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSS 548

Query: 212 LIAQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
             A +  +L+E+I  L     +I S +Q   L   LF   G+     S    KS    +N
Sbjct: 549 RFAHDISRLEEEIYVLAGCRFLISSPKQ---LGEVLFGTMGLAGGKKS----KSGQYSTN 601

Query: 270 ITQLAKDLILNRLASSG----SAILKLNTLSEAVSS------------DGRLRGTLQFYG 313
           +T+L       RLA+ G    S IL+   LS+  S+             GR+  +    G
Sbjct: 602 VTEL------ERLAAEGEVIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVG 655

Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           A +TGR S      QN+P R E   EI                         R+  IA  
Sbjct: 656 A-QTGRLSSTDPNLQNIPIRTEIGREI-------------------------RNAFIAKK 689

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  L+ AD + IE R+ A +A E   ++AF   EDI+  T  + F      V +E RA  
Sbjct: 690 GHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARA 745

Query: 433 KVMELALGY 441
           K +  A+ Y
Sbjct: 746 KTINFAILY 754


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 41/196 (20%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A  G   +  D + IE R+LA  + ++  + AFAN EDI+V T    F     + 
Sbjct: 649 KSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHVRTAMMIFG----ES 704

Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-FE------ 473
           + E R++ K +   L    GY+  ++  K  AS     ++++ +N  S    FE      
Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKSYIEKYFENFTSIKKYFEKIKNEA 764

Query: 474 ----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                           D+E A+   + M   Y   ++   L G+A +++K A       +
Sbjct: 765 KQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA-------M 814

Query: 518 LQLWKDLTEGFACVVQ 533
           L++ K+L E    ++Q
Sbjct: 815 LEINKELNEDKKLILQ 830


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G   V AD + IE RVLA  +G+   I+A+   +DI+  T ++ F+TP D
Sbjct: 642 LIRKVFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFD 701

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+  QR   K +   + Y
Sbjct: 702 EVTDLQRRNAKAVNFGIVY 720


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           S  +R   I   G  LV AD + IE R+LA +  E   ++A+ N +D++  T    F+  
Sbjct: 710 SRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLVEAYQNYQDVHRVTAQLLFDKA 769

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
              ++ E+R+IGK +   + Y  GA+ F   A   GL +Q+
Sbjct: 770 --NITSEERSIGKTINFGVIYGMGAQRF---ARAFGLSVQE 805


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 24/152 (15%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           + +  L + +++DGR+  +     A+ TGR S      QN+P       + T   +A+ R
Sbjct: 618 VTVEGLIKTIAADGRIHTSFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRR 669

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           G                 ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++
Sbjct: 670 G----------------FVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLH 713

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T  A+ F      V  E R   K M   L Y
Sbjct: 714 TTAAAQVFGVEQSAVDAEMRRKIKAMSYGLAY 745


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   L++L S+    L  N ++E     GR+        A+ TGR S     
Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +     KL+ AD + IE
Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F    +++S E+R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSEERRVGKTINFGVIYGMGI 800

Query: 446 KVF 448
           K F
Sbjct: 801 KKF 803


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 621 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGEGFD 655

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF +G+DI+  T A+      D+V+ E+R+  K 
Sbjct: 656 TLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 715

Query: 435 MELALGY 441
           +   + Y
Sbjct: 716 VNFGIIY 722


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R+  K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 121/300 (40%), Gaps = 63/300 (21%)

Query: 179 PLSDGERDLWL------LDQTINDRG-----YRIDLDLV----------LKLQELIAQER 217
           P S  ER + L      L QTI  RG     Y ID+ LV          +KL+E + Q+ 
Sbjct: 421 PESTEERAMALWRLRDDLSQTIESRGLSEVLYGIDMPLVPVLVSMEKSGIKLEEPVLQDV 480

Query: 218 -KKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSE-GTLKSILSHSN 269
              L E + ++ + I  ++ ++  L         LF   G+  V  ++ G    +     
Sbjct: 481 ISDLKERLERIVEEITSAAGESINLNSPKQVGCLLFEKLGLPPVKKTKTGYSTDVTVLEQ 540

Query: 270 ITQLAKD-------LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           + +L +        L+ +R  S  S+   L  +S +V  DG +R T +    + TGR S 
Sbjct: 541 LAELPEPHNAVPSMLLEHRALSKMSSGFALPLMS-SVCGDGIIRSTFE-SDTTGTGRLSS 598

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QNLP                          G  SD ++S +I    G+  V AD 
Sbjct: 599 RDPNLQNLPA------------------------YGEWSDRIKSSLIPREKGRCFVAADY 634

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E RVLA I+GE      F +G DI+  T +  F      V+KE R   K++   L Y
Sbjct: 635 SQVELRVLAHISGEKRLADIFRSGRDIHTETASMVFGVDSSMVTKELRRSAKMVTFGLLY 694


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  GK L+ AD A IE  +LA ++ +   ++AF  G D++  T A  F  PI +
Sbjct: 703 IRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGE 762

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V  + R I K +   + Y  G   F+
Sbjct: 763 VLPDMRRIAKTINFGVMY--GMSAFR 786


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 31/155 (20%)

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   I AF+ G+DI+++T A+ F   +D+V+ EQR   K +   L Y  
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY-- 58

Query: 444 GAKVFKTMASHCGL-----------------DLQQFSQNVKSTSTFEDW-EQAESHHLWM 485
           G   F  ++   G+                  +QQF  ++++ +  + + E      L++
Sbjct: 59  GMSAF-GLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYL 117

Query: 486 QDQYPEFAVKDK----------LIGTACELVKKAW 510
            D     A++ K          + GTA +++K+A 
Sbjct: 118 PDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 152


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+ AD + IE R++A  + +D  + AF +G+D++  T A+     ++ 
Sbjct: 682 IRKAFIAPAGRVLLAADYSQIELRLMAHFSQDDALLDAFRHGQDVHRRTAAEVLGIALED 741

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 742 VTNDQRRQAKAVNFGLLY 759


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 142 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 201

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 202 HPFNLNSRDQ--LERVLFDELGLPAIGKTENTGKRSTSAAVLEALREAHPIVEKILQYRE 259

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 260 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 307

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 308 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 349

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 350 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRTAKTINYGVLY 393


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 25/143 (17%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DGR+R T    G + TGR S      QNLP    S+EI                   
Sbjct: 564 MDEDGRVRTTFIQTGTA-TGRLSSAEPNLQNLPV---SDEI------------------- 600

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
             S  +R  + A  G  LV AD + IE R+LA ++ ++  ++A+  G DI+  T +  F 
Sbjct: 601 --SKKIRYAVTAPAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFG 658

Query: 419 TPIDKVSKEQRAIGKVMELALGY 441
              ++V +  R I K +   + Y
Sbjct: 659 ISAEEVDERLRRIAKTVNFGIIY 681


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 41/257 (15%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIV-KLTDGI-IRSSRQTYALRMYLFLITGI 251
           + + G R+D + + K    + ++  KL+E I+ K  +   I S +Q   +      ++G 
Sbjct: 494 MENTGVRVDEERLKKYANTLLEKIDKLEESIISKAGESFNINSPKQLGEILFGKLKLSGG 553

Query: 252 DLVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRL 305
                   T   +L    +  ++ +D++  R       + KLN+     L+  +  DGR+
Sbjct: 554 KKTKTGYSTAADVLEKLALEHEIIRDILEYR------QLTKLNSTYATGLAGYIREDGRI 607

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            GT      + TGR S      QN+P R E   +I                         
Sbjct: 608 HGTFN-QTITATGRISSTEPNLQNIPVRTEMGSKI------------------------- 641

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +   G   V AD + IE RVLA ++G++  I+++ +  DI+  T ++ F+ P+++V
Sbjct: 642 RDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHVPLEEV 701

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 702 TPELRRNAKAVNFGVVY 718


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 51/297 (17%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ  G      +E   ++++R+      ER L  +   +   G ++D D + ++    AQ
Sbjct: 512 WQFLGPLLH--IEKVTKVYERM------ERPLVPVLAEMEMHGIKVDRDTLSRMSNAFAQ 563

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
           +   L+ +I +        + Q++ +    ++   L   ++L    +G   +  + ++I 
Sbjct: 564 KMAGLEAEIHE-------KAGQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGADIL 616

Query: 272 Q-LAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324
           + LA +  L  L      + KL     + L + ++++ GR+  +    GA+ TGR +   
Sbjct: 617 EDLATEHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLASTD 675

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P   RSEE           G  I           R   +A  G  L+  D + I
Sbjct: 676 PNLQNIPI--RSEE-----------GRRI-----------REAFVAEEGNVLLALDYSQI 711

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           E R+LA +A  D   +AF NG DI+  T ++ FN P++ +    R   K +   + Y
Sbjct: 712 ELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIY 768


>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
          Length = 865

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 53/297 (17%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVD 255
           G  ID  ++ KL    + +   L+E I KL+  +  I SSRQ   L   LF     D + 
Sbjct: 484 GIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSRQ---LSTILF-----DKMG 535

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNTLSEAVSS--DGRLR 306
           + +G   S  ++S   ++  +L  N +      ILK        NT ++ ++   D    
Sbjct: 536 IKKGKKLSSGTYSTDAEVLHELAFNGV-EIADEILKWRHFTKLKNTYTDVLAKQIDNNTS 594

Query: 307 GTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
               FY   ++ TGR S      QN+P   RSEE                       + +
Sbjct: 595 RVHTFYSMTSTVTGRLSSSNPNLQNIPI--RSEE----------------------GNAI 630

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+  IA +G KL+ AD + IE R++A IA       AF+  +DI++ T  + FNT    +
Sbjct: 631 RNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNI 688

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            K+ R   K +   + Y  G   F  +A   G+   + S++++  + F+ + + +S+
Sbjct: 689 DKKLRRKAKSINFGIIY--GISPFG-LAKQLGITRSEASKHIE--NYFKSYPEIKSY 740


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 128 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 187

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 188 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 245

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 246 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 293

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 294 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 335

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 336 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 127 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 186

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 187 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 244

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 245 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 292

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 293 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 334

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 335 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 378


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ GK L+ AD + IE R+LA +A      ++FA GEDI+  T A+ F  P++ 
Sbjct: 676 IRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLPMEG 735

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 736 MDPMVRRRAKAINFGIIY 753


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ GK L+ AD + IE R+LA +A      ++FA GEDI+  T A+ F  P++ 
Sbjct: 653 IRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLPMEG 712

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 713 MDPMVRRRAKAINFGIIY 730


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 126 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 185

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 186 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 243

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 244 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 291

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 292 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 333

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 334 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 377


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R   K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIG 716


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 128 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 187

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 188 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 245

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 246 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 293

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 294 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 335

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 336 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA     LV AD +  E R+ A +AG++  I  F N  DI+  T +  +  P+D+
Sbjct: 471 IRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQ 530

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   KV+   + Y
Sbjct: 531 VTSNQRRNAKVINFGVLY 548


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 128 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 187

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 188 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 245

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 246 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 293

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 294 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 335

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 336 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +  D R+ G       + TGR S      QN+P                     I 
Sbjct: 596 LANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIP---------------------IR 633

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
             LG A   +R   +  +G   + AD + IE RVLA ++ ++  I A+   +DI+  T +
Sbjct: 634 MELGRA---IRKVFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTAS 690

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F  P+D+V+  QR   K +   + Y
Sbjct: 691 EVFGIPMDEVTSTQRRDAKAVNFGIIY 717


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R   K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIG 716


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I + G  +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PI++V+   R   K +   + Y  G
Sbjct: 685 ASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIG 716


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G  L+ AD + IE R+LA I       +AF  G DI+  T ++ F  P+  
Sbjct: 751 IRQAFIAKDGHVLISADYSQIELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVAD 810

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476
           +  E R   K +   + Y  G   F  +A+  G+D       ++ + +      T+ D  
Sbjct: 811 MDPETRRRAKAINFGIVY--GISAFG-LANQLGIDQGEAGAYIKTYFERFPGIRTYMDAT 867

Query: 477 QAESHHL 483
           +AE   L
Sbjct: 868 RAEVRSL 874


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 177/430 (41%), Gaps = 55/430 (12%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A+ A     A+ +++ P +L DR +  A    +L+   DE+V  + H+  ++  + +   
Sbjct: 374 AQDAYYVPLAHDYENAPAQL-DREQILAQIKPILE---DESVQKIGHHLKYDAHVLENH- 428

Query: 85  GIDIPSKRWICTSVLAR--TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKG 138
           GI++  K W   ++LA    N + +      ++  +  HLT   E   GK    + F + 
Sbjct: 429 GIEL--KGWYFDTMLASYVLNAVATRHGMDDVSRLYLSHLTTTFEQVAGKGAKQKTFNQI 486

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL----IPLSDGERDLWLLDQTI 194
            I++  +      HV  ++LF E     ++   EL   L    +P++   R L ++++  
Sbjct: 487 EIETAAHYAAEDAHV-TYRLF-EVLDAKLQKHPELVNILHNVEMPVA---RVLTIMEEN- 540

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRM-YLFLITGI 251
              G  +DL  + +L    A     L+  I +L      + S +Q   +    L L  G 
Sbjct: 541 ---GIELDLGFLDQLGIEFANTMANLESQITELAGQSFNVSSPKQVGEILFDKLGLKGGK 597

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T +S+L    I     +LIL+    S       + L +  +SD     T   
Sbjct: 598 KTATGQYSTSESVLE--KIDHPITELILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYH 655

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P +E   EI  Q                     +R   IA 
Sbjct: 656 QALTATGRLSSTDPNLQNIPVRE---EIGRQ---------------------IRKAFIAP 691

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G+ L+ AD + IE R++A  + ++  + AF +G+D++  T A+     ++ V+ +QR  
Sbjct: 692 QGRVLLAADYSQIELRLMAHFSQDEALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQ 751

Query: 432 GKVMELALGY 441
            K +   L Y
Sbjct: 752 AKAVNFGLLY 761


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA ++ +   IKAF + EDI+  T +  F+ P+ +VS EQR   K +   
Sbjct: 668 ADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFG 727

Query: 439 LGYQGGAKVFKTMASHCGLD 458
           L Y  G + F  +A   G+D
Sbjct: 728 LIY--GQQAF-GLAHELGID 744


>gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
 gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
          Length = 96

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M  L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D  +   +P  +L
Sbjct: 1  MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60

Query: 59 QYLRDETVMCVAHNSLFERILFKKTL---GIDI 88
            L DETV   A N+ FER+   + L   GI++
Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYLRDKGINV 93


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 27/157 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L   +  D R+  TL     + TGR S      QN+P   RSE              
Sbjct: 626 LDALPSLIRGDKRIHTTLN-QTVTATGRLSSSDPNLQNIPT--RSE-------------- 668

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                LG     VR+      G   +  D + IE R+LA ++ ++  + AF +G D +  
Sbjct: 669 -----LG---HRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFNSGADFHAA 720

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           T A+ F  P+++V+   R+  K +   + Y  G + F
Sbjct: 721 TAARVFGVPVEEVTPALRSRAKAVNFGIVY--GQQAF 755


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 27/152 (17%)

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           + TL +A++ +DG +  T +   A+ TGR S      QN+P                NR 
Sbjct: 671 VQTLIDAINRTDGHIHTTFEQTVAA-TGRLSSTDPNLQNIP----------------NRN 713

Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
               D         RS  I + G   L+ AD + +E R++A  +G++  I AF +G D +
Sbjct: 714 AEGRD--------TRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADFH 765

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
               +  +  P+D +S +QR+  K M   L Y
Sbjct: 766 RYVASLVYGIPVDDISGDQRSHVKAMSYGLAY 797


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G  L+ AD + IE R+LA I       +AF  G DI+  T ++ F  P++ 
Sbjct: 728 IRQAFIAAPGHLLISADYSQIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEG 787

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+  G+D  +    +K+
Sbjct: 788 MPSETRRRAKAINFGIVY--GISAFG-LAAQLGIDQGEAGAYIKT 829


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 131 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 190

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 191 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 248

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 249 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 296

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 297 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 338

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 339 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 382


>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
 gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
          Length = 1020

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G +LV AD + IE R+LA IA      +AF +G DI+  T ++ F  P+  
Sbjct: 777 IRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVQG 836

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           +  E R   K +   + Y  G   F  +A+  G+  ++ +  +K    FE +    ++  
Sbjct: 837 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAAAYIK--KYFERFPGIRAYMD 891

Query: 484 WMQDQYPEFAVKDKLIGTACE 504
             +D   E      L G  C 
Sbjct: 892 ATRDFCREHGYVTTLFGRKCH 912


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +V AD + IE RVLA ++ +   I AFA GEDI+  T A  F    + 
Sbjct: 661 IRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEM 720

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   KV+   + Y
Sbjct: 721 INAEMRRQAKVINFGVLY 738


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G KLV AD + IE R+L+ +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 842 MPSEIRRRAKAINFGIIY 859


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 621 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 668

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 669 ------------FVVGEGYESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAAS 716

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 717 QVFGVERSAVDAEMRRKIKAMSYGLAY 743


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +  DGR+  +      + TGR S      QN+P   R E         L R     
Sbjct: 624 LANYIKEDGRIHTSFN-QTITVTGRLSSTEPNLQNIPM--RIE---------LGR----- 666

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   + + G   + AD + IE RVLA ++G++  I+A+   +DI+  T +
Sbjct: 667 --------LIRKAFLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITAS 718

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+ P D+V+  QR   K +   + Y
Sbjct: 719 QVFHIPFDEVTDLQRRNAKAVNFGIVY 745


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G KLV AD + IE R+L+ +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 842 MPSEIRRRAKAINFGIIY 859


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 30/159 (18%)

Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349
           ++ L E V SD GR+         + TGR S      QN+P R E S +I          
Sbjct: 658 VDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRTEFSRQI---------- 706

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                          R   I  +G  LV AD + IE R+LA ++ E   I+A+   +D++
Sbjct: 707 ---------------RKAFIPESGWLLVSADYSQIELRILAHLSQEKMLIEAYNTNQDVH 751

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
             T    F+   D+++ ++R +GK++   + Y  G++ F
Sbjct: 752 SLTAQLLFDK--DEITADERRLGKIINFGVIYGMGSQRF 788


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQ
Sbjct: 2   IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61

Query: 429 RAIGKVMELALGY 441
           R   K +   L Y
Sbjct: 62  RRSAKAINFGLIY 74


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 618 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 714 QVFGVEKSAVDAEMRRKIKAMSYGLAY 740


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I   G     AD + IE R++A ++ ++  ++AF  G DI+  T AK ++  IDK
Sbjct: 681 IRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIWHVDIDK 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDAQRKKAKQANFGIIY 758


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ ++ AD + IE R++A  + ++  +KAF +G DI+  T A+     ++ 
Sbjct: 686 IRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQATAAEVMGIALED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTSDQRRQAKAINFGLLY 763


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  N   L   AD + IE R++A ++G+   I+AF +G DI+  T AK +  P++
Sbjct: 681 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +V+ + R   K     + Y  G  VF  +A   G+
Sbjct: 741 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L +      RL  T    GA+ TGR S      QN+P   +S+E +           
Sbjct: 618 VDALPKLADERNRLHTTFNQTGAA-TGRLSSSNPNLQNIPV--KSDEGIK---------- 664

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   I+  G  L+  D + IE RVLA ++ ++  IKA+++G D++  
Sbjct: 665 ------------IRRGFISDKGNTLLAIDYSQIELRVLAELSKDETLIKAYSDGLDLHDL 712

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T  K F+   D V++ QR + K++  ++ Y
Sbjct: 713 TAKKIFDIDTD-VTRSQRTMAKIVNFSIIY 741


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 604 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 651

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 652 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAAS 699

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 700 QVFGVDRSAVDAEMRRKIKAMSYGLAY 726


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  N   L   AD + IE R++A ++G+   I+AF +G DI+  T AK +  P++
Sbjct: 681 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +V+ + R   K     + Y  G  VF  +A   G+
Sbjct: 741 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ +   I+AF  GED++    ++AF  PID+V+ E R   K M
Sbjct: 721 LMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTTEMRHRVKAM 780

Query: 436 ELALGY 441
              L Y
Sbjct: 781 SYGLAY 786


>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
 gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
          Length = 860

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 53/297 (17%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVD 255
           G  ID  ++ KL    + +   L+E I KL+  +  I SSRQ   L   LF     D + 
Sbjct: 479 GIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSRQ---LSTILF-----DKMG 530

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNTLSEAVSS--DGRLR 306
           + +G   S  ++S   ++  +L  N +      ILK        NT ++ ++   D    
Sbjct: 531 IKKGKKLSSGTYSTDAEVLHELAFNGV-EIADEILKWRHFTKLKNTYTDVLAKQIDNNTS 589

Query: 307 GTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
               FY   ++ TGR S      QN+P   RSEE                       + +
Sbjct: 590 RVHTFYSMTSTVTGRLSSSNPNLQNIPI--RSEE----------------------GNAI 625

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+  IA +G KL+ AD + IE R++A IA       AF+  +DI++ T  + FNT    +
Sbjct: 626 RNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNI 683

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            K+ R   K +   + Y  G   F  +A   G+   + S++++  + F+ + + +S+
Sbjct: 684 DKKLRRKAKSINFGIIY--GISPFG-LAKQLGITRSEASKHIE--NYFKSYPEIKSY 735


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 111/272 (40%), Gaps = 48/272 (17%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYAL 241
           ER L  +   +   G ++D D + ++    AQ+   L+ +I  L  G   + S +Q   L
Sbjct: 537 ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAALEAEIHGLAGGPFNVGSPKQ---L 593

Query: 242 RMYLF----LITGIDLVDMSEGTLKSILSHSNITQLAKDLI--------LNRLASSGSAI 289
              LF    L  G+   + + GT   +L   ++     DL         L++L S+ +  
Sbjct: 594 GEILFERMSLQGGVKGKNGAWGTGADVLE--DLAAEGHDLPARVLDWRQLSKLKSTYTDA 651

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           L+ +   E     GR+  +    GA+ TGR +      QN+P   R+EE           
Sbjct: 652 LQEHIHPET----GRVHTSYSIAGAN-TGRLASTDPNLQNIP--VRTEE----------- 693

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A  GK LV  D + IE R+LA IA      +AF  G DI+
Sbjct: 694 -----------GRRIREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQAFREGHDIH 742

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             T A+ FN P++ +    R   K +   + Y
Sbjct: 743 AMTAAEMFNVPLEGMDPMVRRQAKAINFGVIY 774


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 36/177 (20%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422
           +R   IA +G KL+  D + +E RVLA ++ ++  +KA+   +D++  T  K F     +
Sbjct: 642 IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKE 701

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------- 475
           +VS+EQR + K++  ++ Y  G   F  +A   G+ ++  ++ +K    FE +       
Sbjct: 702 EVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIK--RYFEQYPRVAQFE 756

Query: 476 ----EQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
               E AE H                   +  +++Q    AV   + GTA E++KK 
Sbjct: 757 TEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKV 813


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQ
Sbjct: 2   IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61

Query: 429 RAIGKVMELALGY 441
           R   K +   L Y
Sbjct: 62  RRSAKAINFGLIY 74


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 44/279 (15%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL ++           +   G R+D+  +  L   +  E ++L+E++ +L  
Sbjct: 419 LKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAG 478

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGS 287
                +SR    L   LF   G+  +  +E T K   S + +  L +   I++R+     
Sbjct: 479 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRE 536

Query: 288 AILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                NT  + + +      GRL        A+ TGR S      QN+P           
Sbjct: 537 LTKLKNTYIDPLPALVHPKTGRLHTRFN-QTATATGRLSSSDPNLQNIP----------- 584

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                     +  PLG     +R   +A  G  LVV D + IE RVLA ++G++  I+ F
Sbjct: 585 ----------VRTPLG---QRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVF 631

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             G DI+  T +  F    + V    R   K +   + Y
Sbjct: 632 QEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLY 670


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G  +  AD + IE R++A ++ +   ++AF  G D++  T A+ F    + 
Sbjct: 688 IRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLRAFEQGLDVHRATAAEVFGVSPEH 747

Query: 424 VSKEQRAIGKVMELALGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           V+ EQR   K +   L Y     G AK     AS     ++++ +       + +  +A+
Sbjct: 748 VTPEQRRYAKTINFGLIYGMSPYGLAKALGIDASAAKSYIERYFERFAGVRAYMEQTRAQ 807

Query: 480 S 480
           +
Sbjct: 808 A 808


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  N   L   AD + IE R++A ++G+   I+AF +G DI+  T AK +  P++
Sbjct: 681 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +V+ + R   K     + Y  G  VF  +A   G+
Sbjct: 741 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  T    G + TGR S      QN+P       
Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 664 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 706

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 707 IEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     ++FE    E  E H                   +  ++ Q    
Sbjct: 767 DASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 827 AVNTVIQGTAAEVLKKVM 844


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 73/183 (39%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   L +L S+    L  N ++E     GR+        A+ TGR S     
Sbjct: 98  HEIIQHLIKHRTLTKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 152

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +     KL+ AD + IE
Sbjct: 153 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 187

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F   +  +S ++R +GK +   + Y  G 
Sbjct: 188 LRILAHLADEEILINAFHKNDDIHSLTAKLIFEKEV--ISSDERRVGKTINFGVIYGMGI 245

Query: 446 KVF 448
           K F
Sbjct: 246 KKF 248


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQ
Sbjct: 2   IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61

Query: 429 RAIGKVMELALGY 441
           R   K +   L Y
Sbjct: 62  RRSAKAINFGLIY 74


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L ++++ DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 728 LIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 775

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I AF +GED++ T   
Sbjct: 776 ------------FVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 823

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             FN     V  E R   K M   L Y
Sbjct: 824 YVFNVEPTAVDAEMRRKIKAMSYGLAY 850


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ ++ AD + IE R++A  + ++  +KAF +G DI+  T A+     ++ 
Sbjct: 686 IRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQATAAEVMGIALED 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 746 VTSDQRRQAKAINFGLLY 763


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 32/175 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422
           +R   IA +G KL+  D + +E RVLA ++ ++  +KA+   +D++  T  K F     +
Sbjct: 644 IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKE 703

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK-------STSTFED- 474
           +VS+EQR + K++  ++ Y  G   F  +A   G+ ++  ++ +K         + FE  
Sbjct: 704 EVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIKRYFAQYPRVAQFETE 760

Query: 475 -WEQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
             E AE H                   +  +++Q    AV   + GTA E++KK 
Sbjct: 761 IIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKV 815


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I +N   +++ AD + IE RVLA I  +   I+AF   EDI+ TT +K F  P +
Sbjct: 656 IRKVFIPTNQDYVLLDADYSQIELRVLAHITDDSNMIEAFLKNEDIHTTTASKVFGIPPE 715

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
           +VS   R+  K +   + Y  G
Sbjct: 716 EVSSLMRSRAKAVNFGIVYGIG 737


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  T    G + TGR S      QN+P       
Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 664 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 706

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 707 IEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     ++FE    E  E H                   +  ++ Q    
Sbjct: 767 DASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 827 AVNTVIQGTAAEVLKKVM 844


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A     ++ AD + IE R++A ++ +   + AF + +D++  T +  FN PI++
Sbjct: 670 IRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKDVHSVTASTMFNMPINE 729

Query: 424 VSKEQRAIGKVMELALGY 441
           V+K+ R   K +   L Y
Sbjct: 730 VTKKHRRRSKAINFGLIY 747


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R+LA ++G++  I  F  G+DI+  T A+ F  P+++V+ E R   K +
Sbjct: 651 LLSADYSQIELRLLAHMSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAV 710

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
              + Y     G A+         G  + ++ +       F D   AE+H
Sbjct: 711 NFGIVYGISDFGLARNLHISRKEAGDYISRYFERYPGVRAFMDKVVAEAH 760


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 32/175 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422
           +R   IA +G KL+  D + +E RVLA ++ ++  +KA+   +D++  T  K F     +
Sbjct: 642 IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKE 701

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK-------STSTFED- 474
           +VS+EQR + K++  ++ Y  G   F  +A   G+ ++  ++ +K         + FE  
Sbjct: 702 EVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIKRYFAQYPRVAQFETE 758

Query: 475 -WEQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
             E AE H                   +  +++Q    AV   + GTA E++KK 
Sbjct: 759 IIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKV 813


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 38/179 (21%)

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           +++SH N+++L             + + KL TL +   +DGR+  T      + TGR S 
Sbjct: 607 AVISHRNLSKL-----------KSTYVDKLATLID--PADGRVHTTFN-QTVTATGRLSS 652

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                     I  P G     +R+  +A+ G   + AD +
Sbjct: 653 SNPNLQNIP---------------------IRTPEG---RRLRAAFVAAAGHLFLAADYS 688

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ RVLA  +G+    +AFA+ +DI+  T A+ F      VS + R + K +   + Y
Sbjct: 689 QIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVY 747


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  T    G + TGR S      QN+P       
Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 664 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 706

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 707 IEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     ++FE    E  E H                   +  ++ Q    
Sbjct: 767 DASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 827 AVNTVIQGTAAEVLKKVM 844


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+
Sbjct: 809 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 868

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 869 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 909


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 614 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 648

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D+V+ E+R+  K 
Sbjct: 649 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 INFGIIY 715


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   L++L S+    L  N +SE     GR+        A+ TGR S     
Sbjct: 653 HEIIPFLIKHRTLSKLLSTYIDALP-NLISEKT---GRVHTNFN-QAATATGRLSSSNPN 707

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +   G KL+ AD + IE
Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKGWKLLSADYSQIE 742

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F    + ++ ++R +GK +   + Y  G 
Sbjct: 743 LRILAHLANEEILINAFHKNDDIHSLTARLIFEK--EDINSDERRVGKTINFGVIYGMGI 800

Query: 446 KVF 448
           K F
Sbjct: 801 KKF 803


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  N   L   AD + IE R++A ++G+   I+AF +G DI+  T AK +  P++
Sbjct: 685 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 744

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +V+ + R   K     + Y  G  VF  +A   G+
Sbjct: 745 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 776


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   L++L S+    L  N ++E     GR+        A+ TGR S     
Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +     KL+ AD + IE
Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNCKLLSADYSQIE 742

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F    +++S ++R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EQISSDERRVGKTINFGVIYGMGI 800

Query: 446 KVF 448
           K F
Sbjct: 801 KKF 803


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 38/191 (19%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           + + R+ G  +  GA+ TGR S      QN+P+                           
Sbjct: 318 TRNKRVYGEFKQIGAA-TGRMSSLRPNLQNIPKN-------------------------- 350

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               ++       G K +VAD + IE R+ A    ++  I AF  G+D++  T +     
Sbjct: 351 ----LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGK 406

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH---CGLDLQQ---FSQN-VKSTSTF 472
             D+++KE+R + K +   L Y    K     A       ++LQ+   F +N  K   +F
Sbjct: 407 SYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKANYGVSINLQEAKKFHENYFKFYKSF 466

Query: 473 EDWEQAESHHL 483
           +DW      HL
Sbjct: 467 KDWHDRVKEHL 477


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GKKL+ AD + IE R+LA +A      +AF  G+DI+  T ++ FN P++ 
Sbjct: 693 IRQAFIAPPGKKLISADYSQIELRLLADVANIPALREAFQLGQDIHARTASEVFNIPLEG 752

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 753 MDALTRRRAKAINFGIIY 770


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D+V+ E+R+  K 
Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 704

Query: 435 MELALGY 441
           +   + Y
Sbjct: 705 INFGIIY 711


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+
Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 622 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 669

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +    +AF +GED++ T  A
Sbjct: 670 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAA 717

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+     V  E R   K M   L Y
Sbjct: 718 QVFSVEQSAVDAEMRRKIKAMSYGLAY 744


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 610 LIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 NVTPEMRSQAKAVNFGIVY 688


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+
Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+
Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +   +V AD + IE R++A ++ +   I  F +G+DI+ TT ++ F T ++ 
Sbjct: 704 IRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTTTASEIFVTSLNL 763

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+ EQR   K +   L Y   A
Sbjct: 764 VTNEQRHQAKTINFGLIYGMSA 785


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+
Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 610 LIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 NVTPEMRSQAKAVNFGIVY 688


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  +    G + TGR S      QN+P       
Sbjct: 619 LNKLKTT-----YVDTLPLLVDENSRIHTSFNQIGTA-TGRLSSSDPNLQNIP------- 665

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   IA  GK L+  D + +E RVL  ++ ++  
Sbjct: 666 --VKTDDGIK---------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENL 708

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 709 IEAYREEKDLHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 768

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     +TFE    E  E H                   +  ++ Q    
Sbjct: 769 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 828

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 829 AVNTVIQGTAAEVLKKVM 846


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +   LV AD + IE R+LA ++ E   ++A+ N +D++  T    F+  +  
Sbjct: 713 IRKAFITQDDWLLVSADYSQIELRILAHLSQEPVLLEAYQNYQDVHRVTAQLLFDKEV-- 770

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           ++ E+R+IGK +   + Y  GA+ F   A   GL  Q+
Sbjct: 771 ITSEERSIGKTINFGVIYGMGAQRF---ARSMGLSFQE 805


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G  LV AD + IE R+L    G+D    AFA   D++    A+ F  P  +
Sbjct: 740 LRKAFIPRDGWVLVTADYSQIELRLLTHFCGDDTLRAAFAEDRDVHTAVAAQIFKVPEGE 799

Query: 424 VSKEQRAIGKVMELALGY 441
           V+K QR + K +   + Y
Sbjct: 800 VTKAQRGVAKTVNFGVLY 817


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 146/357 (40%), Gaps = 73/357 (20%)

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           AL+ S    K +E    GK+ I  F         Y C  A+     +L GE   + +EAT
Sbjct: 483 ALHLSRQTVKYDELVGTGKSAIGIFEVEPQKLSDYACQDADIT--LKLRGELAAK-LEAT 539

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            EL +    L   E  L  +   +  +G  ID + + KL         K++E++V LT+ 
Sbjct: 540 PELLEVCRTL---EFPLVRVLADMEHQGVSIDTEHLAKLA-------VKVNEELVGLTER 589

Query: 231 IIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
           I  ++ +T+       L   LF     D++ +           +N+  L +  +LN +A+
Sbjct: 590 IHEAAGETFNIDSPKQLGHILF-----DVLKLPTKKATKTGYSTNVQVLEELALLNPIAA 644

Query: 285 S-----------GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-R 332
                       G+ I  L  L  A +  GRL  +      + TGR S      QN+P R
Sbjct: 645 EVLEYRSLQKLKGTYIEALPKLLHAAT--GRLHTSFN-QSITATGRLSSSNPNLQNIPIR 701

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAW 391
            +  +EI                         R   I SN + L++ AD + IE RV A 
Sbjct: 702 TDLGKEI-------------------------RRAFIPSNPENLLLSADYSQIELRVAAE 736

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           ++G+   I+AF N EDI+  T    F+T  D+V+ + R   K  E+  G   G + F
Sbjct: 737 LSGDPMLIEAFRNHEDIHAATARVIFDT--DEVTSDMRR--KAKEVNFGVLYGIQPF 789


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 49/236 (20%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L  A   DGR+  T    G S+TGR S      QN+P   R+EE             
Sbjct: 591 IDALDTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIPI--RTEE------------- 634

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                    S  +R+      G + L+ AD + IE R++A ++G+   I+AF +GED++ 
Sbjct: 635 ---------SRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHR 685

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
              A+ F     +V+   R   K M   L Y              GL     S+ ++   
Sbjct: 686 FVGARVFGVEPAEVTPAMRTKVKAMSYGLVY--------------GLSAFGLSKQLR--- 728

Query: 471 TFEDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                EQ+E+  L M + +  F AV+D L G+  +  +  +     G  + + DLT
Sbjct: 729 ----IEQSEAKKL-MLEYFARFGAVRDYLRGSVEQARQDGYTETIFGRRRPFPDLT 779


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L  A+  DG++         + TGR S      QN+P + E   EI              
Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635

Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      R   I +    +++ AD + IE RVLA I+ +   I AF   +DI+  T
Sbjct: 636 -----------RKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            ++ F  PID+V+   R+  K +   + Y  G
Sbjct: 685 ASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIG 716


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G K++ AD + IE R++A +A ++  + AF +  D++  T A+ F   +++
Sbjct: 692 IRQAFVAPKGYKMMAADYSQIELRIMAHLAKDEGLLDAFRHDLDVHKATAAEVFGVALEE 751

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 752 VTSDQRRKAKAINFGLIY 769


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +AS G  LV AD + IE RVLA ++ +   + AF +G DI+  T ++ F+   D
Sbjct: 645 LIRKAFLASEGGVLVDADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYD 704

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V   QR   K +   + Y
Sbjct: 705 EVDDRQRYEAKAVNFGIVY 723


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 603 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 650

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +    +AF +GED++ T  A
Sbjct: 651 ------------FVVGEGFESLLTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAA 698

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+     V  E R   K M   L Y
Sbjct: 699 QVFSVEQSAVDAEMRRKIKAMSYGLAY 725


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 480 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 585

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 586 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R C +    G   + AD + IE R+LA ++ ++  + AF +G D +  T ++ F  P++
Sbjct: 635 IRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVE 694

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS E R+  K +   + Y
Sbjct: 695 DVSPELRSRAKAVNFGIVY 713


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 28/176 (15%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N ++    S GR+  +     A+ TGR S      QN+P   R+EE           G  
Sbjct: 678 NLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPNLQNIPV--RTEE-----------GRK 723

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I           R   +A+ G  L+ AD + IE R+LA I       KAF  G DI+  T
Sbjct: 724 I-----------RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMT 772

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            ++ F+TPI+ +    R   K +   + Y  G   F  +A+  G+   +    +K+
Sbjct: 773 ASEMFDTPIEGMDPMIRRRAKAINFGIVY--GISAFG-LANQLGISQGEAGAYIKT 825


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 25/130 (19%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R ER  EI                         ++ I       
Sbjct: 697 TGRLSSTNPNLQNIPVRTERGREIR------------------------KAFIPRDENHV 732

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LV AD + IE R++A I+ +    +AF  G+DI+  T AK FN    +V+KE R   K +
Sbjct: 733 LVSADYSQIELRIVAAISADVNMCEAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSV 792

Query: 436 ELALGYQGGA 445
              + Y  GA
Sbjct: 793 NFGIIYGQGA 802


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 624 LIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 671

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 672 ------------FVVGEGYESLMTADYSQIELRVMAHLSEDLGLIEAFTSGEDLHTTVAS 719

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+     V  E R   K M   L Y
Sbjct: 720 QVFSVERSAVDAEMRRKIKAMSYGLAY 746


>gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii]
 gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1008

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R  ++A  G  L+ AD + +E RV+A I  +     AF    D++  T A+ F  P+  V
Sbjct: 395 RRALVARPGWLLLAADYSQVELRVIAHITQDPTLASAFRERRDVHAQTAARVFRVPLGAV 454

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +  QR  GK +   L Y  GA     +A   GL   + S  +    TF D
Sbjct: 455 TPAQRQAGKQVNFGLVYGMGA---AKLARDIGLPDNEASDFIH---TFRD 498


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 28/163 (17%)

Query: 282 LASSGSAILKLNT--LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEE 338
           LA   +A L++    L ++V  DGR+  T Q   A+ TGR S      QN+P R E   +
Sbjct: 605 LAHRDAAKLRVTVEGLLKSVHPDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRTEAGRQ 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           I                         R+  +    + L+ AD + IE R++A ++G++  
Sbjct: 664 IR------------------------RAFRVGEGFESLLTADYSQIEMRIMAHLSGDEGL 699

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           I+AF  GED++    ++ F      V+ E R+  K M   L Y
Sbjct: 700 IEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAMSYGLAY 742


>gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  GK L+ AD + +E R+LA  + +   I AF  G DI+  T ++    P+++
Sbjct: 644 VRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTASEIMGVPVEE 703

Query: 424 VSKEQRAIGKVMELALGY 441
           V    R+  K +   L Y
Sbjct: 704 VGSNDRSKAKAVNFGLMY 721


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 421 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 480

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 481 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 538

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 539 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 586

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 587 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 628

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 629 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 672


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G   ++ AD + IE RVLA ++G+D  I AF + +DI+  T A+ F  P+ 
Sbjct: 634 IRELFVPGPGYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMA 693

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ + RA  K +   + Y
Sbjct: 694 EVTAQMRARAKAVNFGIVY 712


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QNLPR   +  +      A   GE   D LG      R C +A++G  L
Sbjct: 643 TGRLSCVEPNLQNLPRNGITAAVAGN--DAEEDGEE--DLLGF-----RRCFVATDGCVL 693

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +  D   IE RVLA + G+   ++A     DI+       F      VS E+R + K + 
Sbjct: 694 LSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KPVSTEERRLAKRVV 751

Query: 437 LALGYQGGAKVFKTMASHCGL 457
             L Y  G    KT+A+H G+
Sbjct: 752 FGLLYGAGP---KTLATHMGV 769


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +
Sbjct: 9   IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAI 68

Query: 436 ELALGY 441
              L Y
Sbjct: 69  NFGLIY 74


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 73/281 (25%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G  LV AD + IE R+LA ++ E   ++A+ + +D++  T    F+    +
Sbjct: 703 IRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--GE 760

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           ++ E+R++GK +   + Y  GA              Q+F++  K T         E    
Sbjct: 761 ITPEERSLGKTINFGVIYGMGA--------------QKFARESKLT--------VEQGRK 798

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +++  +  +A          ++ +    +K Q + Q       G+   +     +  RR 
Sbjct: 799 FIEKYHQRYA----------QVFQYLENSKKQAIAQ-------GYVETI-----LGRRRY 836

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
            N    +++R            R L   D+  D   LN   +QL+R            +Q
Sbjct: 837 FNFDNPLLKR-----------LRGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQ 879

Query: 604 AISRDI-------LCEGMKNATKNGYDIVLTVHDEIVSETP 637
             S DI       L E ++N       ++L VHDE+V E P
Sbjct: 880 GSSADIIKVAMVKLAEVLQNYRAR---LLLQVHDELVLEVP 917


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G   V  D + IE R++A ++ E   I AF  GEDI+  T A+ F  P D+
Sbjct: 616 IRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDE 675

Query: 424 VSKEQRAIGKVMELALGY 441
           V    R+  K +   + Y
Sbjct: 676 VDDLLRSRAKAVNFGIIY 693


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 480 HSFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 585

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 586 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 610 LIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQTAAEVFGVDIA 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 417 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 476

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 477 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 534

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 535 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 582

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 583 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 624

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 625 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 668


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G  LV AD + IE R++A ++G+   + AF NG+DI+  T A+        
Sbjct: 677 IRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGLLDAFKNGKDIHRATAAEIMEVDEAD 736

Query: 424 VSKEQRAIGKVMELALGY 441
           V  EQR   K +   L Y
Sbjct: 737 VDNEQRRRAKAVNFGLIY 754


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            VR+      G   L+ AD + IE R+LA ++G++  I AF  G+DI+  T ++ F  P+
Sbjct: 652 AVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPL 711

Query: 422 DKVSKEQRAIGKVMELALGY 441
            +V+  QR   K +   + Y
Sbjct: 712 AEVTSAQRRSAKAVNFGIVY 731


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +  D R+ G       + TGR S      QN+P   R E                 
Sbjct: 137 LANYIGDDERIHGKFN-QTITATGRISSTEPNLQNIP--ARVE----------------- 176

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
             LG A   +R   +   G   V AD + IE RVLA ++ +   I A+   +DI+  T +
Sbjct: 177 --LGRA---IRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTAS 231

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F  PID+VS  QR   K +   + Y
Sbjct: 232 EVFGVPIDQVSSIQRRDAKAVNFGIVY 258


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA   KKL+ AD + IE R+LA +A  +   +AF N  DI+    ++ F   I++
Sbjct: 484 IRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQAFKNSLDIHTLVASEIFGVKIEE 543

Query: 424 VSKEQRAIGKVMELALGY 441
           VS   R   K +  ++ Y
Sbjct: 544 VSSHMRQHAKTINFSIIY 561


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 480 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR S      QN+P      
Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 585

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 586 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 38/187 (20%)

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+ G  +  GA+ TGR S      QN+P+                               
Sbjct: 323 RVYGEFKQIGAA-TGRMSSLRPNLQNIPKN------------------------------ 351

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           ++       G K +VAD + IE R+ A    ++  I AF  G+D++  T +       D+
Sbjct: 352 LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGKSYDE 411

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDL-----QQFSQN-VKSTSTFEDWE 476
           ++KE+R + K +   L Y    K     A ++ G+ +     ++F +N  K   +F+DW 
Sbjct: 412 ITKEERQLAKAINFGLIYGMSPKSLVEYAKANYGVSISLQEAKKFHENYFKFYKSFKDWH 471

Query: 477 QAESHHL 483
                HL
Sbjct: 472 DKVKEHL 478


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 28/176 (15%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N ++    S GR+  +     A+ TGR S      QN+P   R+EE           G  
Sbjct: 693 NLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPNLQNIPV--RTEE-----------GRK 738

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I           R   +A+ G  L+ AD + IE R+LA I       KAF  G DI+  T
Sbjct: 739 I-----------RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMT 787

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            ++ F+TPI+ +    R   K +   + Y  G   F  +A+  G+   +    +K+
Sbjct: 788 ASEMFDTPIEGMDPMIRRRAKAINFGIVY--GISAFG-LANQLGISQGEAGAYIKT 840


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R  ++A  G KL+ +D + IE RVLA ++ +   I+ F N EDI+  T  K F      
Sbjct: 564 IRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHTQTAVKIFGVHPSM 623

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           V    R + K +   + Y  G
Sbjct: 624 VDHHLRRMAKTINFGIIYGMG 644


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I++   KL+ AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 771 IRTAFISTPRHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 831 MPGEVRRRAKAINFGIIY 848


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 30/156 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     LS  V  D R+ G+ Q    + TGR S      QN+P              
Sbjct: 576 KLNSTYAEGLSNYVGEDQRIHGSFQ-QMVTATGRLSSTEPNLQNIP-------------- 620

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                  I   +G      RS  I   G   + AD + +E R+LA ++ ++  I+A+   
Sbjct: 621 -------IRTEMG---RVFRSVFIPKEGSVFLDADYSQVELRLLASLSKDEKLIEAYRKD 670

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            DI+  T ++ F+ P+++V+ E R   K +   + Y
Sbjct: 671 ADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVY 706


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%)

Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   ER LWL  +           +   G R+D+  +  L   +A+E  +L+ ++ +L  
Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479

Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278
                +SR    L   LF   G+  +  +E T K   S          H  + ++ +   
Sbjct: 480 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L +L S+      ++ L + +    GRL        A+ TGR   C    QN+P      
Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLCCCDPNLQNIP------ 585

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          +  PLG     +R   IA  G  LV  D + IE RVLA ++G++ 
Sbjct: 586 ---------------VRTPLG---QRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            I+ F  G DI+  T +  F  P + V    R   K +   + Y
Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  +      + TGR S      QN+P R E   EI                      
Sbjct: 644 GRIHASFN-QTVTATGRLSSSEPNLQNIPVRGEEGREI---------------------- 680

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R+  I   G  L+ AD + IE R+LA  + +   ++AF N +DI+  T  K ++   
Sbjct: 681 ---RNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNNDDIHRKTAMKIYSVSK 737

Query: 422 DKVSKEQRAIGKVMELALGY 441
           + V+   R I K++  ++ Y
Sbjct: 738 EHVTASMRNIAKIINFSIIY 757


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R C +    G   + AD + IE R+LA ++ ++  + AF +G D + +T A+ F  P++
Sbjct: 665 IRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAARVFGVPLE 724

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           +V+   R+  K +   + Y  G + F  +A + G+  ++  + +
Sbjct: 725 EVTPSMRSRAKAVNFGIVY--GQQAFG-LAQNLGIGFKEAQEMI 765


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  T    G + TGR S      QN+P       
Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 664 --VKTDDGIK---------------IREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENL 706

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 707 IEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     ++FE    E  E H                   +  ++ Q    
Sbjct: 767 DASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 827 AVNTVIQGTAAEVLKKVM 844


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           LN+L ++      ++TL   V  + R+  T    G + TGR S      QN+P       
Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +T   +                +R   +A  GK L+  D + +E RVL  ++ ++  
Sbjct: 664 --VKTDDGIK---------------IREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENL 706

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           I+A+   +D++  T  + FN +  + VS+EQR I K++  ++ Y     G AK  K    
Sbjct: 707 IEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766

Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492
                ++++ +     ++FE    E  E H                   +  ++ Q    
Sbjct: 767 DASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826

Query: 493 AVKDKLIGTACELVKKAW 510
           AV   + GTA E++KK  
Sbjct: 827 AVNTVIQGTAAEVLKKVM 844


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 24/152 (15%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           + +  L + + +DGR+  +     A+ TGR S      QN+P       + T   +A+ R
Sbjct: 616 VTVEGLVKTIGADGRVHTSFSQIVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRR 667

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           G                 ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++
Sbjct: 668 G----------------FVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLH 711

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T  ++ F     +V  E R   K M   L Y
Sbjct: 712 TTVASQVFGVERGEVDPEMRRKIKAMSYGLAY 743


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D V+ E+R+  K 
Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKA 704

Query: 435 MELALGY 441
           +   + Y
Sbjct: 705 INFGIIY 711


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+KL+ AD + IE R+LA IA       AFA   DI+  T ++ F  P++ 
Sbjct: 770 IRKAFIAPPGRKLISADYSQIELRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEG 829

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 830 MPPEVRRRAKAINFGIIY 847


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +  D R+ G       + TGR S      QN+P                     I 
Sbjct: 626 LANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIP---------------------IR 663

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
             LG A   +R   +   G   + AD + IE RVLA ++ ++  I A+   +DI+  T +
Sbjct: 664 MELGRA---IRKVFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTAS 720

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F  P+D+V+  QR   K +   + Y
Sbjct: 721 EVFGIPMDEVTSTQRRDAKAVNFGIIY 747


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 28/154 (18%)

Query: 290 LKLNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + +  L ++VS DGR+  T LQ   A  TGR S      QN+P   R+EE          
Sbjct: 601 VTVEGLQKSVSDDGRIHTTYLQTIAA--TGRLSSTEPNLQNVPI--RTEE---------- 646

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   +  +G   L+ AD + IE RV+A ++G+   I+AF +GED
Sbjct: 647 ------------GRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSGED 694

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++    ++ F    + V+   R+  K M   L Y
Sbjct: 695 LHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAY 728


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  +      + TGR S      QN+P R E   EI                      
Sbjct: 644 GRIHASFN-QTVTATGRLSSSEPNLQNIPVRGEEGREI---------------------- 680

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R+  I   G  L+ AD + IE R+LA  + +   ++AF N +DI+  T  K ++   
Sbjct: 681 ---RNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSK 737

Query: 422 DKVSKEQRAIGKVMELALGY 441
           + V+   R I K++  ++ Y
Sbjct: 738 EHVTASMRNIAKIINFSIIY 757


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +  DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 618 LIKTIGQDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 714 QVFGVDKSAVDAEMRRKIKAMSYGLAY 740


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           + E R++ K +   L Y  G   +KT++ +  ++       ++++ +N  S    FE   
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NEAKQNGFIVTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEINKELNEDKKLILQ 830


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   ++S G  LV AD + IE RVLA I+ ++  I AF N +DI+  T AK F    +
Sbjct: 645 LIRKAFLSSEGCVLVDADYSQIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFE 704

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+   R+  K +   + Y
Sbjct: 705 DVTPSLRSRAKAVNFGIVY 723


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   L++L S+    L  N ++E     GR+        A+ TGR S     
Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +     KL+ AD + IE
Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F    +++S ++R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGI 800

Query: 446 KVF 448
           K F
Sbjct: 801 KKF 803


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 610 LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G KLV AD + IE R+LA IA      +AF +  DI+  T ++ F  P+  
Sbjct: 765 IRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVLKQAFHDKLDIHAMTASEMFGVPVKD 824

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           +  E R   K +   + Y  G   F  +A+  G+  ++    +K    FE +    ++  
Sbjct: 825 MPAEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK--KYFERFPGIRAYMD 879

Query: 484 WMQDQYPEFAVKDKLIGTACE 504
             +D   E    + L G  C 
Sbjct: 880 ATRDFCREHGYVETLFGRKCH 900


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 610 LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            VR+      G   L+ AD + IE R+LA ++G++  I AF  G+DI+  T ++ F  P+
Sbjct: 652 AVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPL 711

Query: 422 DKVSKEQRAIGKVMELALGY 441
            +V+  QR   K +   + Y
Sbjct: 712 AEVTSAQRRSAKAVNFGIVY 731


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G     AD + IE R++A ++ +   I+AF  GEDI+  T A+ F   + +
Sbjct: 682 IRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEAFKKGEDIHAATAARIFKKDLSE 741

Query: 424 VSKEQRAIGKVMELALGY 441
           VS+++R   K     + Y
Sbjct: 742 VSRDERRKAKTANFGIIY 759


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 44/155 (28%)

Query: 308 TLQFYGASRTGRWSGC----VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           T   YGA +TGR+S          QN+P  E+S                           
Sbjct: 428 TYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------------- 459

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420
           +R    A +G K V  D + IE RVL++++G++   +A+  G+D+Y    +K +  P   
Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519

Query: 421 ---------IDKVSKEQRAIGKVMELALGYQGGAK 446
                    ++   K +R   K + L + Y+ GAK
Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAK 554


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G   V AD + IE R+LA  +G++  I+A+    DI+  T ++ F+ P D+
Sbjct: 632 IRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDE 691

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K +   + Y
Sbjct: 692 VTDLQRRNAKAVNFGIVY 709


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 44/155 (28%)

Query: 308 TLQFYGASRTGRWSGC----VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           T   YGA +TGR+S          QN+P  E+S                           
Sbjct: 428 TYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------------- 459

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420
           +R    A +G K V  D + IE RVL++++G++   +A+  G+D+Y    +K +  P   
Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519

Query: 421 ---------IDKVSKEQRAIGKVMELALGYQGGAK 446
                    ++   K +R   K + L + Y+ GAK
Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAK 554


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  +  AD + IE R++A I+G+   + AF +G D++  T ++ F     +
Sbjct: 718 VREAFVAPPGSVIASADYSQIELRIMAHISGDAALLLAFHDGIDVHRATASEIFGVDRAQ 777

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   KV+   L Y
Sbjct: 778 VTSEQRRYAKVINFGLIY 795


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           + E R++ K +   L Y  G   +KT++ +  ++       ++++ +N  S    FE   
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NEAKQNGFIVTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEINKELNEDKKLILQ 830


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 61/311 (19%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLV 206
           +L  EY   D + T +L ++  PL +    L L  +           I   G +ID+D++
Sbjct: 493 ELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVL 552

Query: 207 LKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEG 259
               + I ++ + L+  I     VK     I S +Q   L   LF    +D        G
Sbjct: 553 SVFSKTIEEDVRNLEASIYEKAGVKFN---IASPKQ---LGEVLFDKLQLDPKAKKTKTG 606

Query: 260 TLKS----ILSHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             K+    +L+ +N + + +D++    L +L S+      ++ L   ++ +  L  T   
Sbjct: 607 QYKTGEDVLLTLANKSDIVQDILDFRQLQKLKST-----YVDALPSLINPNTGLIHTSYN 661

Query: 312 YGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              + TGR S      QN+P R ER  E+                         ++ I  
Sbjct: 662 QAVAATGRLSSTNPNLQNIPIRTERGREVR------------------------KAFIPR 697

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           S    ++ AD + IE R++A ++ +   ++AF  G DI+  T AK +   +D+VS +QR 
Sbjct: 698 SENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRR 757

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 758 NAKAVNFGIIY 768


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G     AD + IE RV+A ++G+   I+AF  G DI+  T AK +   ++ 
Sbjct: 681 IRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAFREGYDIHAATAAKIYGRAVED 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           V++++R   K     + Y  G  VF  +A    +D  +  Q
Sbjct: 741 VTRDERTKAKRANFGIIY--GITVF-GLAERLDIDRNEAKQ 778


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  ++ AD + IE R+LA ++G++  ++AF N EDI+  T A+ F   ++
Sbjct: 642 IRKAFVPSEPGWIILSADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLE 701

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E R+  K +   + Y
Sbjct: 702 EVTGEMRSRAKAVNFGIVY 720


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 44/78 (56%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+ L+ AD + IE R++A ++ ++  + AF +G+D++  T A+     ++ 
Sbjct: 683 IRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIALED 742

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ +QR   K +   L Y
Sbjct: 743 VTNDQRRQAKAVNFGLLY 760


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 610 LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K +   + Y
Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G  L+ AD + IE R++A +AG     +AFA G+DI+  T ++ F  P++ 
Sbjct: 678 IREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEG 737

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 738 MDPMVRRQAKAINFGIIY 755


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+V T +K F T   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHVETASKLFKTEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 122/311 (39%), Gaps = 74/311 (23%)

Query: 161 EYCKRDVEAT---RELFKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           EY   D + T     + KR +P+  G       +R L  +   +   G ++D   + KL 
Sbjct: 511 EYAAEDADVTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLS 570

Query: 211 ELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           E  A E K+L+ +I ++   +  + S +Q   L   LF           +          
Sbjct: 571 EEFATETKRLEGEIHEIAGQEFTVGSPKQ---LGEILF-----------DKLGFKGGKKG 616

Query: 269 NITQLAKDL-ILNRLASSGSAI------------LK---LNTLSEAVSS-DGRLRGTLQF 311
              Q + D  +L +L+  G+ I            LK    + L EA++   GR+  +   
Sbjct: 617 KSGQYSTDQSVLEKLSGDGAEIAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTSYSL 676

Query: 312 YGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
            GA +TGR S      QN+P R E   +I                         R   +A
Sbjct: 677 VGA-QTGRLSSTDPNLQNIPIRTEIGRQI-------------------------RDAFVA 710

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  L+ AD + IE R+ A +A      +AFA GEDI+  T  + F     +V+++ RA
Sbjct: 711 EEGNVLLAADYSQIELRLAAHMADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRA 766

Query: 431 IGKVMELALGY 441
             K +  A+ Y
Sbjct: 767 RAKTINFAILY 777


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 36/252 (14%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDM 256
           G R+D+  +  L   +A+E ++L+E++ +L       +SR    L   LF    +  +  
Sbjct: 450 GVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQ--LERVLFDELRLPALGK 507

Query: 257 SEGTLKSILSHSNITQL--AKDLILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTL 309
           ++ T K   S + +  L  A  ++   L       LK NT  + + S      GRL    
Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLK-NTYVDPLPSLVHPRTGRLHTRF 566

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A+ TGR S      QN+P                     +  PLG     +R   +
Sbjct: 567 N-QTATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFV 601

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    R
Sbjct: 602 AEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMR 661

Query: 430 AIGKVMELALGY 441
              K +   + Y
Sbjct: 662 RAAKTVNFGVLY 673


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+KLV AD + IE R+LA IA       AFA   DI+  T ++ F  P++ 
Sbjct: 800 IRRAFIAPPGRKLVSADYSQIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFGVPVEG 859

Query: 424 VSKEQRAIGKVMELALGY 441
           +  E R   K +   + Y
Sbjct: 860 MPSEIRRRAKAINFGIIY 877


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L ++L+ E    + H       +L    L +D+P         L + +    SLK A 
Sbjct: 425 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLTQPDFHADSLKQA- 483

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E+  RD+   R 
Sbjct: 484 -AEHFLDLHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 527

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 528 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 587

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 588 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 646

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 647 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 690

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 691 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 726

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 727 LMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786

Query: 436 ELALGY 441
              L Y
Sbjct: 787 SYGLAY 792


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 25/171 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+  D + IE R++A +AG     +AF +G DI+  T ++ F  P+D+
Sbjct: 748 IRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQ 807

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           ++ E R   K +   + Y     G  +         G  ++Q+ +      T+ +  +A 
Sbjct: 808 MTSEIRRKAKAINFGIIYGISGFGLGRQLGITPGEAGAFIRQYFERFPELQTYMETTKAF 867

Query: 480 SHH-----------LWMQD---------QYPEF-AVKDKLIGTACELVKKA 509
           +              W+Q           Y E  A+   + GTA +++K+A
Sbjct: 868 AREHGYVTTLLGRRCWIQGIREKAPARRAYAERQAINAPIQGTAADIIKRA 918


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   + + G  L+ AD + +E R+LA +A E    ++FA+GEDI+  T ++ F   ++ 
Sbjct: 652 IREAFVPAEGNLLLAADYSQVELRILAHMADEPALKESFAHGEDIHARTASEIFGVFLEL 711

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E R   K +   + Y
Sbjct: 712 VTPEMRRQAKTINFGVLY 729


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 28/133 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R  + +EI         R   I D     +DC+           
Sbjct: 687 TGRLSSTNPNLQNIPIRDAQGKEI---------RKAFIPD-----ADCL----------- 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
              AD + IE R++A ++G+   ++AF +G DI+  T AK +  P+++V+ + R   K  
Sbjct: 722 FFSADYSQIELRIMAHLSGDKNMLEAFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTA 781

Query: 436 ELALGYQGGAKVF 448
              + Y  G  VF
Sbjct: 782 NFGIIY--GISVF 792


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +     +L+ AD + IE R+L  ++GE+   +AF NG+D++  T     +   D+
Sbjct: 731 IRKAFLPQENWQLLSADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLLLDK--DE 788

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           VS ++R +GK +   + Y  GA+ F
Sbjct: 789 VSSDERRLGKTINFGVIYGMGAQRF 813


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           + E R++ K +   L Y  G   +KT++ +  ++       ++++ +N  S    FE   
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NEAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEINKELNEDKKLILQ 830


>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 865

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 25/147 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L++ + +DG++  TL     ++TGR S      QN+    R+EE          +G    
Sbjct: 582 LAKHILADGKIH-TLFNQIQTQTGRLSSSEPNLQNISV--RNEE---------GKG---- 625

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   +AS G  L+ AD + IE R+LA +A E+  I AF +  DI+  T  
Sbjct: 626 ---------IRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAFNHDIDIHTKTAM 676

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F+   D+V    R   K +   + Y
Sbjct: 677 QIFDVAHDEVDANMRRSAKTVNFGIVY 703


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G +L+ AD + IE R+LA +A      KAF +G DI+  T +  F  P+ +
Sbjct: 817 IRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKE 876

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+  ++ S  +K
Sbjct: 877 MTPDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 917


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R    A + + L++ AD + IE R+LA ++ ++  I+AF    DI+    AK FN  I+
Sbjct: 675 IRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLDIHKRMAAKIFNVDIE 734

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           KV+ +QR   K +   + Y  G    + ++   G+ L +
Sbjct: 735 KVTPDQRRAAKTINFGILYGMGQ---RKLSRELGISLNE 770


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 48/306 (15%)

Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209
           YC  DV  TR L             +L+PL +  E+ L  +   +   G RID+  +  L
Sbjct: 537 YCGMDVHVTRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGL 596

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
            E +    ++L+ D  K   G+  +      L   LF   G+D               + 
Sbjct: 597 SEEMGSTLQQLESD-AKAAAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATV 655

Query: 270 ITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
           + +L  D     L+L+    S      ++ L + V ++ GR+         + TGR S  
Sbjct: 656 LEKLGNDHPVVPLVLDHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRLSSS 714

Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               QN+P R E S  I                         R   +   G  L+ AD +
Sbjct: 715 NPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWTLLSADYS 749

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+L  ++GE    +A+  G+D++  T     +   D+VS ++R +GK +   + Y 
Sbjct: 750 QIELRILTHLSGEKVLQEAYRGGDDVHALTARLLLDK--DEVSPDERRLGKTINFGVIYG 807

Query: 443 GGAKVF 448
            GA+ F
Sbjct: 808 MGAQRF 813


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G +LV AD + IE R+L+ +A      KAF +G DI+  T ++ F  P++ 
Sbjct: 789 IRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 848

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  + R   K +   + Y  G   F  +A+  G+  ++    +K
Sbjct: 849 MPSDIRRRAKAINFGIIY--GISAFG-LANQLGIPREEAGAYIK 889


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 24/128 (18%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR S      QN+P                     +  PLG     +R   +A  G
Sbjct: 570 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEAG 605

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    R   K
Sbjct: 606 WALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAK 665

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 666 TVNFGVLY 673


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           +++ AD + IE R++A  +G+    +AF  G DI+ TT +K F  P+++V+ + R   K+
Sbjct: 735 QILSADYSQIELRIMAAFSGDASMTEAFNQGRDIHATTASKVFQVPLEEVTSDMRRKSKM 794

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           +   + Y  G   F  +A   G+   + S+ ++  + FE++
Sbjct: 795 VNFGIIY--GISAFG-LAQRLGIPRGEASEIIR--AYFEEF 830


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G     AD + IE RV+A ++ +   IK F+ G+D++  T A  +  PI++
Sbjct: 682 IRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIKVFSEGKDLHAATAANIYKKPIEE 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V++++R   K     + Y  G  VF
Sbjct: 742 VTRDERTKSKRANFGIIY--GITVF 764


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 24/128 (18%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR S      QN+P                     +  PLG     +R   +A  G
Sbjct: 570 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEAG 605

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    R   K
Sbjct: 606 WALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAK 665

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 666 TVNFGVLY 673


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  GK L+ AD + IE R+LA I       +AF  G DI+  T ++ F+TPI+ 
Sbjct: 723 IRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEG 782

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    R   K +   + Y  G   F  +A+  G+   +    +K+
Sbjct: 783 MDPMIRRRAKAINFGIVY--GISAFG-LANQLGIPQGEAGAYIKT 824


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 24/129 (18%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                 RG+   D        +R+  IA  G  L
Sbjct: 668 TGRLSSSEPNLQNIPA----------------RGDEGKD--------IRNTFIAEKGNVL 703

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R+LA  + +   ++AF N +DI+  T  K ++   + V+   R   K++ 
Sbjct: 704 IAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHVTPSMRNTAKIIN 763

Query: 437 LALGYQGGA 445
            ++ Y   A
Sbjct: 764 FSIIYGKTA 772


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 29/166 (17%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+         + TGR S      QN+P   RS+E                       
Sbjct: 573 DGRIHTNFS-TTVTATGRLSSSSPNLQNIPI--RSKE----------------------G 607

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           + +R   IA  G K++ AD + IE R+LA +A      +AFANG+DI+  T  + F    
Sbjct: 608 NLIRQTFIAPKGYKIISADYSQIELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQK 667

Query: 422 D-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D +V ++ R   K +   + Y  G   F  +A   G+ +++ ++ +
Sbjct: 668 DMEVDEQLRRKAKSINFGIMY--GISQF-GLAKRLGITIEEAAEYI 710


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G +   AD + IE R++A ++ +   I+AF +G DI+  T AK +   I+ 
Sbjct: 712 IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDIHAATAAKIYKIDIND 771

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           V+ + R   K     + Y  G  VF  +A   G+  Q+  + +     FE + Q + +
Sbjct: 772 VTADMRRKAKTANFGIIY--GISVF-GLAERMGVSRQEAKELID--GYFETYPQVKEY 824


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 112/269 (41%), Gaps = 56/269 (20%)

Query: 199 YRIDLDLVLKLQEL------IAQER-----KKLDEDIVKLTDGIIRSSRQTYALR----- 242
           Y ++L L   L ++      +++ER     K+L E + +L++ I + + + + L      
Sbjct: 463 YSVELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKLAGERFNLNSPRQL 522

Query: 243 -MYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              LF   G+  V  ++         L+ +  H  +   AK L+  +LA   S     + 
Sbjct: 523 GYILFEKLGLKPVKKTKTGYSTDASVLEKLAEHEIV---AKVLVYRQLAKLKSTYT--DA 577

Query: 295 LSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L E +  + GRL  T    G + TGR +      QN+P                     +
Sbjct: 578 LPELIDPATGRLHTTFLQAGTA-TGRLASAEPNLQNIP---------------------V 615

Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
            D LG     +R   +A      L+ AD + IE RVLA ++ +    +AF  GEDI+  T
Sbjct: 616 RDSLG---RRIRQAFVAEGPDYVLLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHART 672

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+ F     +V+ E RA  KV+   + Y
Sbjct: 673 AAEIFGVSPQEVTPEMRAKAKVVNFGIVY 701


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 24/152 (15%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           + +  L + +++DGR+  T     A+ TGR S      QN+P       + T   +A+ R
Sbjct: 404 VTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRR 455

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           G                 ++    + L+ AD + IE RV+A ++ +   I+AF +GED++
Sbjct: 456 G----------------FVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLH 499

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T  ++ F      V  E R   K M   L Y
Sbjct: 500 TTAASQVFAVEPGAVDAEMRRKIKAMSYGLAY 531


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G  L+ AD + IE R+LA IA      +AFA G DI+  T ++ F   I+ 
Sbjct: 726 IRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEG 785

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  + R   K +   + Y  G   F  +A+  G+  Q+  + ++
Sbjct: 786 MHSDIRRRAKAINFGIIY--GISAF-GLANQLGISRQEAGRYIQ 826


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C +   G     AD + IE R++A ++G++  I+AF  G DI+  T AK ++  I  
Sbjct: 681 IRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFREGFDIHAATAAKIWHKQIAD 740

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ E+R   K     + Y  G   +  +A   G+D
Sbjct: 741 VTPEERKKAKQANFGIIY--GITTY-GLAQRMGID 772


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R  ++   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGVVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 49/309 (15%)

Query: 145 YDCTRAN-HVQAWQLFGEYCKRD--VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           Y C  A+  +Q +Q F +    +  ++A  E  +R  PL++    LW ++     +G +I
Sbjct: 468 YACEDADITLQLYQFFQQKLASEPTLQALYENVER--PLAEI---LWAMEH----QGVKI 518

Query: 202 DLD-LVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYAL---RMYLFLI--TGIDL 253
             D L ++ QEL AQ  K L +   +L  G+    S +Q   +   R+ L +I  T    
Sbjct: 519 AGDKLAVQSQELAAQ-LKTLQKQAYQLAGGVFNLDSPKQLQEILFERLALPVIHKTPTGQ 577

Query: 254 VDMSEGTLKSILSHSNITQLA-KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              +E  L+ +   + + Q A  ++ILN  A         + L E +  D +   T    
Sbjct: 578 ASTNEEVLQKL---AELRQSALPEIILNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQ 634

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P   RS+E           G  I           R   IA  
Sbjct: 635 AVTSTGRLSSSDPNLQNIPI--RSDE-----------GRRI-----------RQAFIAEE 670

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  ++ AD + IE R++A ++ ++   +AF   +DI+  T A+ F+   + V + QR   
Sbjct: 671 GYSILAADYSQIELRIMAHLSQDERLQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDA 730

Query: 433 KVMELALGY 441
           K +   L Y
Sbjct: 731 KAINFGLIY 739


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G  L+ AD + IE R+LA IA      +AFA G DI+  T ++ F   I+ 
Sbjct: 725 IRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEG 784

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  + R   K +   + Y  G   F  +A+  G+  Q+  + ++
Sbjct: 785 MHSDIRRRAKAINFGIIY--GISAF-GLANQLGISRQEAGRYIQ 825


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   +++L S+    L  N ++E     GR+        A+ TGR S     
Sbjct: 653 HEIIQHLIKHRTISKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +     KL+ AD + IE
Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F    +++S ++R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGI 800

Query: 446 KVF 448
           K F
Sbjct: 801 KKF 803


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 44/155 (28%)

Query: 308 TLQFYGASRTGRWSG----CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           T   YGA  TGR+S          QN+P  E+S                           
Sbjct: 429 TFNQYGAV-TGRFSSSDTVTKINLQNIPSHEKS--------------------------- 460

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420
           +R    A +G KLV  D + IE RVLA+ +G++    A+  G+D+Y    +K +  P   
Sbjct: 461 IRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYED 520

Query: 421 ---------IDKVSKEQRAIGKVMELALGYQGGAK 446
                    ++   K +R   K + L + Y+ GA+
Sbjct: 521 CREFYPDGTVNPEGKHRRTTMKSVLLGIMYERGAQ 555


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 25/126 (19%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R E   EI                         ++ I +S    
Sbjct: 635 TGRISSTEPNLQNIPVRHEMGREIR------------------------KAFIPSSENAV 670

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            V AD + IE RVLA I G++  I AF  GEDI+  T +  F+   + V+ E R   K +
Sbjct: 671 FVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAV 730

Query: 436 ELALGY 441
              + Y
Sbjct: 731 NFGIVY 736


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G++  I+AF  GED++    A+ F    +
Sbjct: 648 IREVFVVGKGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPE 707

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R+  K M   L Y
Sbjct: 708 DVTAEMRSKVKAMSYGLAY 726


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+   + + AD + +E RVLA I  ++  + AF   +DI+  T A+ F+ P+++
Sbjct: 658 LRKVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEE 717

Query: 424 VSKEQRAIGKVMELALGY 441
           V+   R+  K +   + Y
Sbjct: 718 VTDSMRSSAKAVNFGIVY 735


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L+  +  DGR+ G       + TGR S      QN+P R E            L R    
Sbjct: 588 LANFIQEDGRIHGKFN-QTVTATGRISSTEPNLQNIPVRME------------LGR---- 630

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +       V AD + IE R+LA  +G++  I A+    DI+  T 
Sbjct: 631 ---------LIRKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITA 681

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ F+ P D+V+  +R   K +   + Y
Sbjct: 682 SQVFHIPFDEVTDLERRNAKAVNFGIVY 709


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           + E R++ K +   L Y  G   +KT++ +  ++       ++++ +N  S    FE   
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NEAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEINKELNEDKKLILQ 830


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 60/146 (41%), Gaps = 30/146 (20%)

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            V+ DGR+    +  GA  +GR S      Q LPR  R                       
Sbjct: 1188 VADDGRVYAAWKQVGAGASGRMSCKDPNLQQLPRDPR----------------------- 1224

Query: 359  LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                  R C +   G+ LV AD + IE R+ A I G+   + A+  GED++ TT A+A  
Sbjct: 1225 -----FRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGEDLHTTT-ARAVL 1278

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGG 444
               D V+K  R + K +   L Y  G
Sbjct: 1279 GKTD-VTKADRQLSKSLNFGLLYGMG 1303


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 33/255 (12%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
           T+   G R+D D++ ++   + +    ++E++ +L  G   +   T  L   LF    + 
Sbjct: 559 TMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELA-GEEFNINSTQQLGEILFEKLDLP 617

Query: 253 LVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307
           +V  +      T +S+L   +       L+L+  ++       L++L E V  + GRL  
Sbjct: 618 VVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRLHT 677

Query: 308 TLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
           +      + TGR S      QN+P R E   +I                         R 
Sbjct: 678 SFN-QTRTATGRLSSSDPNLQNIPIRTEMGRQI-------------------------RR 711

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +  +G  L+ AD A IE R+LA ++G+D     F  G DI+    A+ +    + V+ 
Sbjct: 712 AFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTP 771

Query: 427 EQRAIGKVMELALGY 441
           EQR+  K +   + Y
Sbjct: 772 EQRSKAKEVNYGIPY 786


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G +L+ AD + IE R+LA +A      +AFA+G DI+  T +  F  P+ +
Sbjct: 773 IRQAFVADAGHQLISADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGE 832

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ + R   K +   + Y  G   F  +A   G+   + S  +K
Sbjct: 833 MTPDLRRRAKTINFGIIY--GISAFG-LADRLGIPQGEASAFIK 873


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +AS G  L+ AD + IE R+LA +A      +AF  G+DI+  T ++ F   ++ 
Sbjct: 725 IRKAFVASKGYLLLSADYSQIELRILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEG 784

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK----STSTFEDWEQAE 479
           ++ E R   K +   + Y  G   F  +AS  G+  ++ S  ++         ED+ +  
Sbjct: 785 MTSEIRRRAKAINFGIIY--GISPF-GLASQLGISRKEASDYIQLYFERFPGIEDYMERT 841

Query: 480 S----HHLWMQD------QYPEF--------------AVKDKLIGTACELVKKA 509
                HH +++        YPE               A+   + G+A +++++A
Sbjct: 842 KIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERAAINAPIQGSAADIIRRA 895


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    +     L+ AD   IE R+LA +A      KAF N EDI+  T ++ FN  I K
Sbjct: 679 IRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKNDEDIHSLTASQIFNVDIKK 738

Query: 424 VSKEQRAIGKVMELALGY 441
           V ++QR   K +   + Y
Sbjct: 739 VDQDQRRKAKAINFGIIY 756


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE R+LA +A       +FANGEDI+  T ++ F  P+  
Sbjct: 694 IRRAFIADPGHVLISADYSQIELRLLAHVADIPQLKDSFANGEDIHARTASEVFGVPMQG 753

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 754 MDSLTRRRAKAINFGIIY 771


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 24/131 (18%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P   RSEE                         +R   IA+ G 
Sbjct: 628 TNTGRLSSSEPNLQNIPI--RSEE----------------------GRSIRHAFIAAEGC 663

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE RVLA ++ +     AFA  EDI+  T A+ F      V++E R   K 
Sbjct: 664 LLLSADYSQIELRVLAHLSADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKT 723

Query: 435 MELALGYQGGA 445
           +   + Y  GA
Sbjct: 724 INFGVIYGQGA 734


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           + E R++ K +   L Y  G   +KT++ +  ++       ++++ +N  S    FE   
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NKAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEINKELNEDKKLILQ 830


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           + E R++ K +   L Y  G   +KT++ +  ++       ++++ +N  S    FE   
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NKAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEINKELNEDKKLILQ 830


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E V+ DGR+  T     A+ TGR S      QN+P          +T+     G+
Sbjct: 29  VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP---------ARTVD----GQ 74

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I +          + +       L+ AD + IE R++A ++G++  + AFA+GED++ +
Sbjct: 75  KIRE----------AFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRS 124

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             A  +    D+V+  QR+  K     L Y
Sbjct: 125 VAALVYGVQPDEVTPTQRSHVKATSYGLAY 154


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF +G+DI+  T A+      + V+ E+R+  K 
Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKA 704

Query: 435 MELALGY 441
           +   + Y
Sbjct: 705 INFGIIY 711


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
          Length = 1036

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 66/310 (21%)

Query: 162 YCKRDVEAT--------RELFKRLIPLSDGERDLWLLD--QTINDRGYRIDLDLVLKLQE 211
           YC  DV+ T         EL +R +     E D+ L+     + + G  I+L  + K+  
Sbjct: 607 YCCEDVDITLRLRNELEAELHRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISS 666

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG---IDLVDMSEGTLKSILSHS 268
             + E KK +E              Q +AL  + F I     + +V   E  LK+    +
Sbjct: 667 DFSAELKKCEE--------------QIHALAGHEFNINSPKQVGVVLFEEMGLKAGKKTA 712

Query: 269 NITQLAKDLILNRLASSG--SAILKLNTLSEAVSS------------DGRLRGTLQFYGA 314
                + +++ N  A S    AIL+  TLS+ +S+            D R+        A
Sbjct: 713 TGYSTSAEVLENLAAESEIVRAILRHRTLSKLISTYADALPKEVSELDQRIHTRFSQTTA 772

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR +      QN+P         T+T +    G++I           RS   A  G 
Sbjct: 773 A-TGRLASTQPNLQNIP---------TRTAE----GKSI-----------RSAFQAPEGH 807

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             +  D + IE R++A ++ +   ++AF N  D++  T +  F T + +V+K+QR   K 
Sbjct: 808 HFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTHTASLVFETELSEVTKQQRYAAKA 867

Query: 435 MELALGYQGG 444
           +   + +  G
Sbjct: 868 VNFGIMFGQG 877


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G  L+++ D + +E RV+A IAG++  I AF +G+DI+  T ++ F  PI+
Sbjct: 633 MRRMFVPGKGYDLLMSCDYSQVELRVMASIAGDERLIDAFRHGQDIHSRTASEIFGVPIE 692

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+   R+  K +   + Y
Sbjct: 693 DVTPFMRSKAKTVNFGIIY 711


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I  L K   L++L S+    L  N ++E     GR+        A+ TGR S     
Sbjct: 653 HEIIQYLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707

Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            QN+P R E S  I                         R   +     KL+ AD + IE
Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A E+  I AF   +DI+  T    F    +++S ++R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGI 800

Query: 446 KVF 448
           K F
Sbjct: 801 KKF 803


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E ++++ GR+  +    GA+ TGR S      QN+P   R+EE             
Sbjct: 653 DALVETINAETGRVHTSYSMVGAA-TGRLSSNDPNLQNIPI--RTEE------------- 696

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R+  +A  G  L+  D + IE R++A IAG +   KAF +G DI+  
Sbjct: 697 ---------GRKIRTAFVAEPGNVLLSVDYSQIELRLVADIAGIESLRKAFLDGIDIHAQ 747

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F  P+ +++ + R   K +   + Y
Sbjct: 748 TASEVFGVPLSEMTPDIRRKAKAINFGIIY 777


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C + + G+ LV AD + IE RVLA ++ +   ++  A G D++  T A+ F+     
Sbjct: 651 MRGCFVPAPGRLLVSADYSQIELRVLAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGL 710

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V++E R   K +   + Y  G   F+
Sbjct: 711 VTREMRVRAKTVNFGVLY--GMSAFR 734


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 18/147 (12%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP--LGLASDCVRSCIIASNGK 374
           TGR S      QNLPR   +  +      A N  E   D   LG      R C +A+ G 
Sbjct: 642 TGRLSCVEPNLQNLPRNGITAAV------AGNDAEEDGDDDLLGF-----RRCFVAAGGC 690

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+  D   IE RVLA + G+   ++A     DI+       F      VS E+R++ K 
Sbjct: 691 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KPVSTEERSLAKR 748

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQ 461
           +   + Y  G    KT+A+H G+ + +
Sbjct: 749 VVFGVLYGAGP---KTLATHMGVTVDR 772


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-----------------LQQFSQNVK 467
           + E R++ K +   L Y  G   +KT++ +  ++                 ++++ + VK
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761

Query: 468 -------------STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                        S   + D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NEAKQNGFITTLNSRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEIDKELNEDKKLILQ 830


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I   G     AD + IE R++A ++ +D  ++AF  G DI+  T AK ++  +D 
Sbjct: 681 IRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMMEAFREGYDIHRATAAKIWHEALDD 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDAQRKKAKQANFGIIY 758


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +RS I    G + L+ AD + IE R++A ++G+   I+AFA GED++    ++ F     
Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPA 712

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS E R   K M   L Y
Sbjct: 713 DVSAEMRTKVKAMSYGLAY 731


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 50/241 (20%)

Query: 278 ILNRLASSGSAILKL-----------NTLSEAVSS-----DGRLRGTLQFYGASRTGRWS 321
           +L  LA+ G A+ +            +T +EA+ +      GR+  +    GA +TGR S
Sbjct: 610 VLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGA-QTGRLS 668

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P   R+EE                         +R   IA  G  LV AD 
Sbjct: 669 STDPNLQNIPV--RTEE----------------------GRKIRQAFIAEEGNVLVSADY 704

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA +A      +AF +G DI+  T ++ F  PI+ +    R   K +   + Y
Sbjct: 705 SQIELRILAHMADIPALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIY 764

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
             G   F  +    G+   + +Q +K+      +E+      +M D+  EFA     + T
Sbjct: 765 --GISGF-GLGRQLGIPSGEANQYIKTY-----FERFPGIRQYM-DETKEFARATGFVKT 815

Query: 502 A 502
           A
Sbjct: 816 A 816


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 125/310 (40%), Gaps = 56/310 (18%)

Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209
           YC  DV  TR L             +L+PL +  E+ L  +   +   G RID+  +  L
Sbjct: 537 YCGMDVHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGL 596

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSI 264
            E +    ++L+ D  K   G+  +      L   LF   G+D            T  ++
Sbjct: 597 SEEMGSTLQQLESD-AKAAAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATV 655

Query: 265 LS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           L      H  +  + +  +L++L S+   I  L  L EA +  GR+         + TGR
Sbjct: 656 LEKLGNDHPVVPLVLEHRVLSKLKST--YIDALPQLVEAET--GRVHTDFN-QAVTATGR 710

Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            S      QN+P R E S  I                         R   +   G  L+ 
Sbjct: 711 LSSSNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWTLLS 745

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+L  ++GE+   +A+ +G+D++  T     +   ++VS ++R +GK +   
Sbjct: 746 ADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLLLDK--NEVSPDERRLGKTINFG 803

Query: 439 LGYQGGAKVF 448
           + Y  GA+ F
Sbjct: 804 VIYGMGAQRF 813


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 44/230 (19%)

Query: 215 QERKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           Q +K L ED+ +K T      S  T A  +    +  +D  + + G L ++L H  I +L
Sbjct: 604 QLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERANGFLGALLRHREINKL 662

Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            +                + TL +A  +SD R+  T +   A+ TGR S      QN+P 
Sbjct: 663 KQ---------------IVQTLIDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIP- 705

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391
                          NR          A   +R   +   G + L+  D + +E R++A 
Sbjct: 706 ---------------NRNA--------AGREIRGVFVPGEGYEALMSCDYSQVELRIMAD 742

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y
Sbjct: 743 LSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAY 792


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 181/455 (39%), Gaps = 90/455 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           ++LCA       + L +  E++A + S L   ++DE V+ VAHN+ F+            
Sbjct: 378 MSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFD------------ 425

Query: 89  PSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                    VL R  GLP +  L +  LA     +L   ++G +L      G +    YD
Sbjct: 426 -------LEVLTRY-GLPEAHPLYDTMLA----HYLIDADQGHSL-DELAGGLLR---YD 469

Query: 147 CTRANHVQAWQLFG-----------EYCKRDVEATRELF----KRLIP-----LSDGERD 186
             R   +   + F            +Y   D   T  L+    K+L P     L++ E  
Sbjct: 470 TIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIP 529

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +  RG  +D+       E + + R++L E +++L   I   S +   L++   
Sbjct: 530 LLYVLMHMEQRGIVLDI-------EALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSP 582

Query: 247 LITG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNT-- 294
              G    D + + E   K+  + + +T     L L  L    + IL        LNT  
Sbjct: 583 KQIGELLFDELKIMEKPRKT-KTGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYI 641

Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L +    DG+L  +      + TGR S      QN+P       I +   + L R   
Sbjct: 642 DPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIP-------IRSDLGRPLRRA-F 692

Query: 353 IADPLGLASDCVRSCIIASN------GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +ADP    +  + +C    +      G  L+ AD + +E RV+A ++ +   I +F +G+
Sbjct: 693 VADPY--YTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGD 750

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           DI+  T AK F    ++V+   R+  K     + Y
Sbjct: 751 DIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 44/230 (19%)

Query: 215 QERKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           Q +K L ED+ +K T      S  T A  +    +  +D  + + G L ++L H  I +L
Sbjct: 599 QLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERANGFLGALLRHREINKL 657

Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            +                + TL +A  +SD R+  T +   A+ TGR S      QN+P 
Sbjct: 658 KQ---------------IVQTLIDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIP- 700

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391
                          NR          A   +R   +   G + L+  D + +E R++A 
Sbjct: 701 ---------------NRNA--------AGREIRGVFVPGEGYEALMSCDYSQVELRIMAD 737

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y
Sbjct: 738 LSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAY 787


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 26/140 (18%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  T      + TGR S      QN+P R ER  EI    I     GE          
Sbjct: 657 GRIHTTYN-QAVAATGRLSSTNPNLQNIPIRTERGREIRKAFIPG---GEEFT------- 705

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
                         ++ AD + IE R++A  +G++  ++AF NG DI+  T +K F   +
Sbjct: 706 --------------ILSADYSQIELRIMADFSGDESMLEAFDNGMDIHAATASKVFGVSL 751

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V+ + R   K++   + Y
Sbjct: 752 EEVNSDMRRKAKMVNFGIIY 771


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +A++  GR+  T     A+ TGR S      QN+        + T+  +A+ RG    
Sbjct: 627 LIKAIAPGGRIHTTFNQTVAA-TGRLSSTDPNLQNV-------HVRTEEGRAIRRG---- 674

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 675 ------------FVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVAS 722

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F     +V  E R   K M   L Y
Sbjct: 723 QVFGVAKSEVDPEMRRKIKAMSYGLAY 749


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  L+ AD + IE R+L  + GE+  ++A+ NG+D++  T     +   + 
Sbjct: 735 IRKAFLPQEGWSLISADYSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLLLDK--EA 792

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V+ ++R +GK +   + Y  GA+ F
Sbjct: 793 VTPDERRLGKTINFGVIYGMGAQRF 817


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS  +   G   + AD A IE  VLA + G++   +AF  G+D++  T +  FN   + 
Sbjct: 707 IRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQDVHRHTASLIFNVKPED 766

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V+ +QR I K +   + Y  G   F+
Sbjct: 767 VTPDQRRIAKTINFGVMY--GMSTFR 790


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ + +  G KL  AD + IE RVLA I+ ++  I AF  G DI+  T +  F    ++V
Sbjct: 640 RAFVPSKPGSKLFAADYSQIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEV 699

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 700 TAEMRRTAKAVNFGIVY 716


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 356 PLGLA-SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           P+G   S  +R   +      LV AD + IE R+LA ++ E   I+A+ N +D++  T  
Sbjct: 783 PIGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAK 842

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
             F    +++S E+R +GK +   + Y  GA+
Sbjct: 843 LLFEK--EEISSEERRVGKTINFGVIYGMGAQ 872


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 32/179 (17%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGC 323
           + +LAKD  + RL        KL +T  +++ S       R+  +    G S TGR S  
Sbjct: 578 LEELAKDYEIARLILEYRKFQKLKSTYVDSIPSSVNITTNRVHSSFHQTGTS-TGRLSSS 636

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV-ADLA 382
               QNLP   RSEE           G+ I           R  +        +V AD +
Sbjct: 637 APNLQNLPT--RSEE-----------GKEI-----------RHAVKPQFENWYIVGADYS 672

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE RVLA ++ ++  + AF N  DI+  T +K FN     V+++ R IGK++  A+ Y
Sbjct: 673 QIELRVLAHMSEDEKLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIY 731


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 31/163 (19%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P   RSEE                         +R   I S+ G
Sbjct: 620 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFIPSHPG 655

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIG 432
            ++  +D + IE RVLA I  +     AF NGEDI+ TT  + F  P + +V+ E R   
Sbjct: 656 WQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQA 715

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           K +   + Y  G   F  +AS+ G+  +Q  Q ++    FE++
Sbjct: 716 KAVNFGIVY--GISDF-GLASNTGITRKQAHQFIE--RYFEEY 753


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 33/255 (12%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
           T+   G R+D D++ ++   + +    ++E++ +L  G   +   T  L   LF    + 
Sbjct: 536 TMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELA-GEEFNINSTQQLGEILFEKLDLP 594

Query: 253 LVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307
           +V  +      T +S+L   +       L+L+  ++       L++L E V  + GRL  
Sbjct: 595 VVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRLHT 654

Query: 308 TLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
           +      + TGR S      QN+P R E   +I                         R 
Sbjct: 655 SFN-QTRTATGRLSSSDPNLQNIPIRTEMGRQI-------------------------RR 688

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +  +G  L+ AD A IE R+LA ++G+D     F  G DI+    A+ +    + V+ 
Sbjct: 689 AFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTP 748

Query: 427 EQRAIGKVMELALGY 441
           EQR+  K +   + Y
Sbjct: 749 EQRSKAKEVNYGIPY 763


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           ++C +A  G   +  D + IE R+LA  + ++  ++AF+N EDI+  T    F       
Sbjct: 649 KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHAKTAIMIFGES---- 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           +   R+I K +   L Y  G   +KT++ +  ++       ++++ +N  S  T FE   
Sbjct: 705 NYHTRSIAKSINFGLIYGMG---YKTLSQNLKIEAKLAKEYIEKYFKNFTSIKTYFEKVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NEAKQNGFIKTLLGRKRYFDFENAKPMQIAM---YERESINSTLQGSAADIIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             ++++ KDL E    ++Q
Sbjct: 814 --MIKIAKDLDENKRLILQ 830


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNGKKLVVADLAG 383
           P  +R      QT+ A  R  + +DP        G A   +R   +A +GK LV AD + 
Sbjct: 615 PETKRVHTSFNQTVAATGRLSS-SDPNLQNIPIRGDAGKNIRKGFMAGSGKILVAADYSQ 673

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RV A  + +   + AF   +DI+  T  +       +V+ E R I K +   + Y  
Sbjct: 674 IELRVFAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGM 733

Query: 444 GAK 446
           G +
Sbjct: 734 GPQ 736


>gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 181/455 (39%), Gaps = 90/455 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           ++LCA       + L +  E++A + S L   ++DE V+ VAHN+ F+            
Sbjct: 378 MSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFD------------ 425

Query: 89  PSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                    VL R  GLP +  L +  LA     +L   ++G +L      G +    YD
Sbjct: 426 -------LEVLTRY-GLPEAHPLYDTMLA----HYLIDADQGHSL-DELAGGLLR---YD 469

Query: 147 CTRANHVQAWQLFG-----------EYCKRDVEATRELF----KRLIP-----LSDGERD 186
             R   +   + F            +Y   D   T  L+    K+L P     L++ E  
Sbjct: 470 TIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIP 529

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +  RG  +D+       E + + R++L E +++L   I   S +   L++   
Sbjct: 530 LLYVLMHMEQRGIVLDI-------EALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSP 582

Query: 247 LITG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNT-- 294
              G    D + + E   K+  + + +T     L L  L    + IL        LNT  
Sbjct: 583 KQIGELLFDELKIMEKPRKT-KTGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYI 641

Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L +    DG+L  +      + TGR S      QN+P       I +   + L R   
Sbjct: 642 DPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIP-------IRSDLGRPLRRA-F 692

Query: 353 IADPLGLASDCVRSCIIASN------GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +ADP    +  + +C    +      G  L+ AD + +E RV+A ++ +   I +F +G+
Sbjct: 693 VADPY--YTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGD 750

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           DI+  T AK F    ++V+   R+  K     + Y
Sbjct: 751 DIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  LV AD + +E R+LA IA  +   +AF +G DI+  T ++ F  PI+ 
Sbjct: 685 IREVFIAEPGHVLVAADYSQVELRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEG 744

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 745 MDPMVRRKAKAINFGVIY 762


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I+   KKL+ AD + IE R+LA IA      + F N  DI+    A+ F   I+K
Sbjct: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792

Query: 424 VSKEQRAIGKVMELALGY 441
           VS + R   K +  ++ Y
Sbjct: 793 VSPQMRRHAKTINFSIIY 810


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GK L+ AD + IE R+LA I       +AF  G DI+  T ++ F  P++ 
Sbjct: 701 IRRAFVAEPGKVLISADYSQIELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEG 760

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  E R   K +   + Y  G   F  +A+  G+   +    +K+
Sbjct: 761 MPSETRRRAKAINFGIIY--GISAFG-LANQLGIPQDEAGAYIKT 802


>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 308

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 29/49 (59%)

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
           R  TYG KL ENIV+A SRD+L E M+        IV+ +HD  V + P
Sbjct: 11  RIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAP 59


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+ AD + IE R+LA IA      +AFA G DI+  T ++ F  P+  
Sbjct: 750 IRKAFVAEPGHALISADYSQIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQG 809

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  + R   K +   + Y  G   F  +A+  G+  ++ +  +K
Sbjct: 810 MPSDVRRRAKAINFGIIY--GISAFG-LANQLGIPREEAAAYIK 850


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           +CII S       AD + IE RVLA IA ++  I AF +  DI+  T ++ F  PI++V+
Sbjct: 641 NCIILS-------ADYSQIELRVLAHIADDENLINAFKHHSDIHTKTASEVFRVPIEEVT 693

Query: 426 KEQRAIGKVMELALGY 441
              R+  K +   + Y
Sbjct: 694 SRMRSNAKAVNFGIVY 709


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 30/142 (21%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  +      + TGR S      QN+P R  R +EI                      
Sbjct: 748 GRIHTSFN-QAVAATGRLSSTNPNLQNIPIRTPRGQEI---------------------- 784

Query: 362 DCVRSCIIASNGKKLVV--ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              R   +   G + V+  AD + IE R++A  +G+   ++AF NG DI+  T +K F+ 
Sbjct: 785 ---RKAFV-PRGPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHV 840

Query: 420 PIDKVSKEQRAIGKVMELALGY 441
            +D+V+ + R   K +   + Y
Sbjct: 841 GLDEVTSDMRRKAKTINFGIIY 862


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G+ L+ AD + IE RV+A +A E    ++F  GEDI+  T ++ F+   D
Sbjct: 651 AIREAFVPDAGQVLLAADYSQIELRVMAHMADEPILQESFRQGEDIHQRTASEIFSVFPD 710

Query: 423 KVSKEQRAIGKVMELALGYQGGA 445
            V  E R   K +   + Y  GA
Sbjct: 711 MVDSEMRRRAKTINFGVLYGMGA 733


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L + +  DGR+  T +Q   A  TGR S      QN+P   R+EE           G
Sbjct: 632 VDGLLKEIRDDGRVHTTYMQTIAA--TGRLSSKDPNLQNIPM--RTEE-----------G 676

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
             I +            ++    + L+ AD + IE R++A ++G+   I AF +G+D + 
Sbjct: 677 RRIRE----------GFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHT 726

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T +  F    + VS  QR+  K M   L Y
Sbjct: 727 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAY 757


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E V+ DGR+  T     A+ TGR S      QN+P          +T+     G+
Sbjct: 644 VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP---------ARTVD----GQ 689

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I +          + +       L+ AD + IE R++A ++G++  + AFA+GED++ +
Sbjct: 690 KIRE----------AFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRS 739

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             A  +    D+V+  QR+  K     L Y
Sbjct: 740 VAALVYGVQPDEVTPTQRSHVKATSYGLAY 769


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  LV AD + IE R+LA  A ++  I++F N EDI+  T A+ F    +
Sbjct: 651 MIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQSFRNDEDIHTRTAAEVFQAFPE 710

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFK 449
            ++++ R   K +   + Y  G   FK
Sbjct: 711 FITEDLRRQAKAINFGIMY--GMSAFK 735


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 43/276 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ 237
           L D E  L  +   + + G+++D+  V    E++  E +++ ++I      +  I S+R+
Sbjct: 489 LHDIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEFNINSTRE 548

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS- 296
             A+   LF     D + +  G        +N+  L K +  + +A       KL  LS 
Sbjct: 549 LGAI---LF-----DKLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYRKLTKLSS 600

Query: 297 -------EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                  +    D R+    +    +RTGR S      QN+P                  
Sbjct: 601 TYVTGLLKVTGPDQRVHSVFR-QTETRTGRISSTEPNMQNIP------------------ 641

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              I   LG     +R   +A  G  L+ AD + IE R+LA I+ +   I AF  G DI+
Sbjct: 642 ---IRTELG---SQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIH 695

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
             T ++ F  P + +  E R   K +   + Y  GA
Sbjct: 696 TATASQVFGVPAEVLPAELRRRAKAINFGIVYGIGA 731


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R C I+ +   +++  D + +E R+LA IA       AF   +D++  T ++ FN P+D
Sbjct: 839 IRRCFISPSDDYVIMKVDYSQVELRILAHIANIPVLKNAFKENKDVHAITASQVFNVPLD 898

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           +V K  R   K +   + Y  G   F  ++   G+D Q
Sbjct: 899 QVDKSTRNKAKAINFGIIY--GMSEF-GLSKRIGVDTQ 933


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L ++L+ E    + H       +L    L +D+P         LA+ +    SLK A 
Sbjct: 152 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 210

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E+  RD+   R 
Sbjct: 211 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 254

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 255 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 314

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 315 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 373

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 374 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 417

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 418 TGRLSSVDPNLQNIP----------------NR--------NAAGREIRGVFVPGEGYEA 453

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 454 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 513

Query: 436 ELALGY 441
              L Y
Sbjct: 514 SYGLAY 519


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  L+ AD + IE R+L  ++GE+   +A+ +G+D++  T     +   D+
Sbjct: 739 IRKAFLPQDGWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DE 796

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           VS ++R +GK +   + Y  GA+ F
Sbjct: 797 VSPDERRLGKTINFGVIYGMGAQRF 821


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I + G +++ AD + IE R+LA  + +   ++AFA  ED++  T A+ F    + 
Sbjct: 618 IRRAFIPAPGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEA 677

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+  QR++ K +  A  Y  GA
Sbjct: 678 VTDAQRSVAKTVNFATIYGQGA 699


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G KLV AD + IE R+L+ +A       AF +G DI+  T ++ F  P+  
Sbjct: 769 IRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMTASEMFGVPVKD 828

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  E R   K +   + Y  G   F  +A+  G+  ++    +K
Sbjct: 829 MPGEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 869


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E V+ DGR+  T     A+ TGR S      QN+P          +T+     G+
Sbjct: 644 VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP---------ARTVD----GQ 689

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I +          + +       L+ AD + IE R++A ++G++  + AFA+GED++ +
Sbjct: 690 KIRE----------AFVPQKPYTALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRS 739

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             A  +    D+V+  QR+  K     L Y
Sbjct: 740 VAALVYGVQPDEVTPTQRSHVKATSYGLAY 769


>gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 886

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A  + +   IK     +DI+++T +  FN P++K+ K  R I K +
Sbjct: 656 LLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHISTASHIFNKPLEKIKKYHRNIAKTI 715

Query: 436 ELALGY 441
             ++ Y
Sbjct: 716 NFSILY 721


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 28/152 (18%)

Query: 292 LNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L + +  DGR+  T +Q   A  TGR S      QN+P   R+EE            
Sbjct: 604 VDGLLKEIRDDGRVHTTYMQTIAA--TGRLSSKDPNLQNIPM--RTEE------------ 647

Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +
Sbjct: 648 ----------GRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFH 697

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             T +  F    + VS  QR+  K M   L Y
Sbjct: 698 TVTASHVFGVAPEDVSVAQRSKIKAMNYGLAY 729


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 158/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L Q+L+ E    + H       +L    L +D+P         LA+ +    SLK A 
Sbjct: 420 AQLAQFLKSEHSRTIVHGYKELLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQA- 478

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E   RD+   R 
Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NELRLRDLAIIRS 522

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 583 MAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGY 441
              L Y
Sbjct: 782 SYGLAY 787


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 158/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L Q+L+ E    + H       +L    L +D+P         LA+ +    SLK A 
Sbjct: 425 AQLAQFLKSEHSRTIVHGYKELLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQA- 483

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E   RD+   R 
Sbjct: 484 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NELRLRDLAIIRS 527

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 528 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 587

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 588 MAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 646

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 647 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 690

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 691 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 726

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786

Query: 436 ELALGY 441
              L Y
Sbjct: 787 SYGLAY 792


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E +  + GR+  +    GA+ TGR +      QN+P   RSEE             
Sbjct: 650 DALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 693

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IA      +AF  G DI+  
Sbjct: 694 ---------GRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAM 744

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P++ +    R   K +   + Y
Sbjct: 745 TASEMFNVPLEGMDPMIRRQAKAINFGVIY 774


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 27/131 (20%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R ER  EI                         R   +  +   
Sbjct: 18  TGRLSSNNPNLQNIPVRTERGREI-------------------------RKAFVPRDENH 52

Query: 376 LVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           L++ AD + IE R++A I+G+    +AF  G+DI+  T AK +N     V+KE R   K 
Sbjct: 53  LLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADVTKEMRYKAKS 112

Query: 435 MELALGYQGGA 445
           +   + Y  GA
Sbjct: 113 VNFGIIYGQGA 123


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 690 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 749

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 750 DVSVAQRSKIKAMNYGLAY 768


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 674 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 733

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 734 DVSVAQRSKIKAMNYGLAY 752


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 24/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GRL  T      + TGR S      QN+P +             L  G  I         
Sbjct: 604 GRLHSTFH-QTVTATGRLSSAEPNLQNIPIR-------------LESGRRIR-------- 641

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             +  +    G  ++ AD + IE RVLA ++ +   ++AF  G+DI+  T A+ F  P++
Sbjct: 642 --KVFVPRQKGNLILTADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPME 699

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ + R+  K +   + Y
Sbjct: 700 EVTPDMRSRAKAVNFGIVY 718


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 649 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 708

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 709 DVSVAQRSKIKAMNYGLAY 727


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 118/310 (38%), Gaps = 72/310 (23%)

Query: 161 EYCKRDVEATRELFKRLIP---LSDGERDLWLLDQTI-------NDRGYRIDLDLVLKLQ 210
           EY   D + T  L + L P   +  G R    +D+ +          G ++D   + KL 
Sbjct: 515 EYAAEDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLS 574

Query: 211 ELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           E  A E  KL++ I +L   +  + S +Q   L   LF           +          
Sbjct: 575 EEFATETAKLEKTIHELAGKEFTVGSPKQ---LGEVLF-----------DDLGHKGGKKG 620

Query: 269 NITQLAKDL-ILNRLASSGSAILK---------------LNTLSEAVSSD-GRLRGTLQF 311
              Q + D  +L RL+  G+ I                  + L +A++ D GR+  +   
Sbjct: 621 KSGQYSTDQSVLERLSGDGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGRVHTSYSL 680

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA +TGR S      QN+P                     I  P+G     +R   +  
Sbjct: 681 VGA-QTGRLSSTDPNLQNIP---------------------IRTPIGRQ---IREAFVPE 715

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           NG  L+ AD + IE R+ A +A      +AFA GEDI+  T  + +     +  ++ RA 
Sbjct: 716 NGNVLLAADYSQIELRLAAHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRAR 771

Query: 432 GKVMELALGY 441
            K +  A+ Y
Sbjct: 772 AKTINFAILY 781


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KL+ AD + IE R+L+ IA      +AF N +DI+  T  + FN   ++
Sbjct: 634 IRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIFNLQKEE 693

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ E R   K +   + Y
Sbjct: 694 LTSEHRRKAKAINFGIIY 711


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +G  L+ AD + IE R+LA IA     I+AF  G DI+  T A+ F  P++ 
Sbjct: 697 IREAFIPEDGNVLISADYSQIELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEG 756

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +    R   K +   + Y  G   F  +A + G+   + S  +K
Sbjct: 757 MDPSIRRQAKAINFGIIY--GISAFG-LARNLGIGRDEASLFIK 797


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L ++++ DGR+  T     A+ TGR S      QN+P       + T   +A+ RG    
Sbjct: 633 LIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 680

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ ++  I AF +GED++ T   
Sbjct: 681 ------------FVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 728

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             F      V  E R   K M   L Y
Sbjct: 729 YVFGVEPAAVDAEMRRKIKAMSYGLAY 755


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E +  + GR+  +    GA+ TGR +      QN+P   RSEE             
Sbjct: 650 DALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 693

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IA      +AF  G DI+  
Sbjct: 694 ---------GRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAM 744

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P++ +    R   K +   + Y
Sbjct: 745 TASEMFNVPLEGMDPMIRRQAKAINFGVIY 774


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E +  + GR+  +    GA+ TGR +      QN+P   RSEE             
Sbjct: 650 DALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 693

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A  GK LV  D + IE R+LA IA      +AF  G DI+  
Sbjct: 694 ---------GRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAM 744

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ FN P++ +    R   K +   + Y
Sbjct: 745 TASEMFNVPLEGMDPMIRRQAKAINFGVIY 774


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 28/152 (18%)

Query: 292 LNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L + +  DGR+  T +Q   A  TGR S      QN+P   R+EE            
Sbjct: 595 VDGLLKEIRDDGRVHTTYMQTIAA--TGRLSSKDPNLQNIPM--RTEE------------ 638

Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +
Sbjct: 639 ----------GRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFH 688

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             T +  F    + VS  QR+  K M   L Y
Sbjct: 689 TVTASHVFGVAPEDVSVAQRSKIKAMNYGLAY 720


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC IA +G   +  D + IE R+LA  + ++  ++AF N EDI+  T    F     + 
Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDEDIHARTAIMIFG----EN 704

Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           + E R++ K +   L    GY+  ++  K  AS     ++++  N  S  +F
Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKTYIEKYFANFTSIKSF 756


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L + +  +GR+  +    G + TGR S      QN+P                     
Sbjct: 610 DKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP--------------------- 647

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I  P G     +R   IA     +V AD + IE R++A ++ +   +KAF  G DI+  T
Sbjct: 648 IKSPEGRK---IRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSAT 704

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     +D V+ EQR   K +   L Y
Sbjct: 705 AAEVLGISLDMVTSEQRRRAKAINFGLIY 733


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake]
 gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake]
          Length = 861

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 31/148 (20%)

Query: 300 SSDGRLRGTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           S+ GR+     FY   ++ TGR S      QN+P   RSEE                   
Sbjct: 582 SNSGRVH---TFYSMVSTATGRLSSSNPNLQNIPV--RSEE------------------- 617

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
               + +R   IA  G KL+ AD + IE R++A IA       AF   +DI+  T  + F
Sbjct: 618 ---GNSIRRAFIAKKGYKLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIF 674

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445
           NT  +K+ K  R   K +   + Y   A
Sbjct: 675 NT--EKLDKNLRRRAKSINFGIIYGMSA 700


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    +
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374
           TGR S      QN+P R E+  EI                         R+      G  
Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      + V+ E+R+  K 
Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKA 704

Query: 435 MELALGY 441
           +   + Y
Sbjct: 705 INFGIIY 711


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 38/208 (18%)

Query: 255  DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--NTLSEAVSSDGRLRGTLQFY 312
            + S+  LK+ L+H  I  L     L +L S+    L L  NT +  + +      T    
Sbjct: 1706 NTSDSNLKNFLNHEEIISLRNYRRLYKLYSAFYLKLPLHINTKTNKIHTTFNQLKTF--- 1762

Query: 313  GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
                +GR+S      Q +PRQ+                             +R   I ++
Sbjct: 1763 ----SGRFSSEKPNLQQIPRQKN----------------------------IREIFIPND 1790

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
                ++AD   IE ++ A I  ++  +KA+ N  D++  T +      I  ++KE R I 
Sbjct: 1791 NNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIA 1850

Query: 433  KVMELALGYQGGAKVFKTMA-SHCGLDL 459
            K +   L Y       K  A ++ GL++
Sbjct: 1851 KAINFGLIYGMNYVNLKNYANTYYGLNM 1878


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 29/166 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L +A++ + GR+  +     A+ TGR S      QN+P   R+EE             
Sbjct: 634 DALKDAINPNTGRVHTSFSL-AATTTGRLSSSEPNLQNIPI--RTEE------------- 677

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R    A  G  +V AD + IE R+LA IA  +   +AF  G+DI+  
Sbjct: 678 ---------GRKIREAFTAEPGHVIVAADYSQIELRLLAHIADVEALKQAFREGQDIHAL 728

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           T ++ F  P++ +    R   K +   + Y  G   F  +A++ G+
Sbjct: 729 TASEMFGVPLENMDPTTRRNAKAINFGIIY--GISAFG-LANNLGI 771


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 14/141 (9%)

Query: 317  TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
            TGR S      QNLPR   +  +      A   GE   D LG      R C +A+ G  L
Sbjct: 969  TGRLSCVEPNLQNLPRNGIAAAVAGN--DAEEDGEE--DLLGF-----RRCFVATGGCVL 1019

Query: 377  VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
            +  D   IE RVLA + G+   + A     DI+       F      VS E+R++ K + 
Sbjct: 1020 LSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KPVSTEERSLAKRVV 1077

Query: 437  LALGYQGGAKVFKTMASHCGL 457
              + Y  G    KT+A+H G+
Sbjct: 1078 FGVLYGAGP---KTLATHMGV 1095


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           C+R+      G  ++ AD + +E R+LA +A +   +    +G D++    AK  +  +D
Sbjct: 81  CIRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCLMSILNSGSDVFKQIAAKWKHVDVD 140

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            V+ EQR   K M   + Y  GA+        C  D   F ++ KS
Sbjct: 141 SVTAEQRQQAKQMCYGMIYGIGARALGEQLGVCEEDAAAFMESFKS 186


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L ++L+ E    + H       +L    L +D+P         LA+ +    SLK A 
Sbjct: 420 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 478

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E+  RD+   R 
Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 522

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 583 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGY 441
              L Y
Sbjct: 782 SYGLAY 787


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L ++L+ E    + H       +L    L +D+P         LA+ +    SLK A 
Sbjct: 420 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 478

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E+  RD+   R 
Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 522

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 583 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGY 441
              L Y
Sbjct: 782 SYGLAY 787


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC IA  G   +  D + IE R+LA  + ++  + AF N EDI+  T    F       
Sbjct: 617 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIFGES---- 672

Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           + E R+I K +   L    GY+  +K  K  A+     ++++ +N  S  ++
Sbjct: 673 NYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTSIKSY 724


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L ++L+ E    + H       +L    L +D+P         LA+ +    SLK A 
Sbjct: 420 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 478

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E+  RD+   R 
Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 522

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 583 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGY 441
              L Y
Sbjct: 782 SYGLAY 787


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  + +A+   GR+  T +  G+S TGR +      QN+P       I T T        
Sbjct: 591 ITGIEKAIDDSGRVHTTYEQAGSS-TGRIASNDPNLQNVP-------IKTAT-------- 634

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +RS   A  G   L+ AD + IE R++A ++G++  I+AF  GED++ 
Sbjct: 635 ---------GRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHR 685

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
              ++ F     +V+ E R   K M   L Y
Sbjct: 686 FVGSRIFGVEPAEVTAEMRTKVKAMSYGLAY 716


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 14/141 (9%)

Query: 317  TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
            TGR S      QNLPR   +  +      A   GE   D LG      R C +A+ G  L
Sbjct: 969  TGRLSCVEPNLQNLPRNGIAAAVAGN--DAEEDGEE--DLLGF-----RRCFVATGGCVL 1019

Query: 377  VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
            +  D   IE RVLA + G+   + A     DI+       F      VS E+R++ K + 
Sbjct: 1020 LSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KPVSTEERSLAKRVV 1077

Query: 437  LALGYQGGAKVFKTMASHCGL 457
              + Y  G    KT+A+H G+
Sbjct: 1078 FGVLYGAGP---KTLATHMGV 1095


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 331 PRQERSEEILTQTIQALNRGET---------IADPLGLASDCVRSCIIASNGKKLVVADL 381
           P+ +R      QTI A  R  +         I D  G     +R   IA  G +++  D 
Sbjct: 664 PKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDEEGR---LLRKGFIAKKGYEILSLDY 720

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A  + +   I A+ +G DI+  T A  F  P D+V+ + R   KV+  ++ Y
Sbjct: 721 SQIELRIMAHFSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIY 780


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 23/125 (18%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P       + T   +A+ RG  + D                  + L
Sbjct: 656 TGRLSSTDPNLQNIP-------VRTDEGRAIRRGFVVGDGF----------------ESL 692

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE RV+A ++ ++  I+AF +GED++ T  ++ F+     V  E R   K M 
Sbjct: 693 MTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKAMS 752

Query: 437 LALGY 441
             L Y
Sbjct: 753 YGLAY 757


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%)

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L ++L+ E    + H       +L    L +D+P         LA+ +    SLK A 
Sbjct: 425 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 483

Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            A +F + H T+ E+       F    ++  P                E+  RD+   R 
Sbjct: 484 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 527

Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216
           L   L P+ D     WL+             +   G ++D   ++ +++  A E      
Sbjct: 528 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 587

Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                             +K L ED+ +K T      S  T A  +    +  +D  + +
Sbjct: 588 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 646

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316
            G L ++L H  I +L +                + TL +A  +SD R+  T +   A+ 
Sbjct: 647 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 690

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                NR          A   +R   +   G + 
Sbjct: 691 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 726

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786

Query: 436 ELALGY 441
              L Y
Sbjct: 787 SYGLAY 792


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC IA  G   +  D + IE R+LA  + ++  + AF N EDI+  T    F     + 
Sbjct: 649 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           + E R+I K +   L    GY+  +K  K  A+     ++++ +N  S  ++
Sbjct: 705 NYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTSIKSY 756


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R       G   + AD + IE  +LA  + +   I+AF N EDI++ T ++ F    DK
Sbjct: 665 IREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAFKNKEDIHIKTASQLFKVDTDK 724

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+   R + K +   + Y   A
Sbjct: 725 VTPSMRRVAKSINFGIIYNMSA 746


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G KL+ AD + IE R+LA +A E+  I AF   +DI+  T    F      
Sbjct: 721 IRKAFLPEKGWKLLSADYSQIELRILAHLANEEILITAFHQNDDIHSLTARLIFEKK--D 778

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ ++R +GK +   + Y  G K F
Sbjct: 779 INSDERRVGKTINFGVIYGMGIKKF 803


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 26/153 (16%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           + ++ L +++++DGR+  T     A+ TGR S      QN+P       I T        
Sbjct: 649 VTVDGLLKSIAADGRIHTTYSQTIAA-TGRLSSTEPNLQNVP-------IRTA------- 693

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R+  +  +G  +L+ AD + IE R++A ++ +   I+AF +  D 
Sbjct: 694 ----------AGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDF 743

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  T +K F      VS EQRA  K M   L Y
Sbjct: 744 HSETASKVFGVDAADVSPEQRAKIKAMNYGLAY 776


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G+K+V  D + IE R++A ++ +     AF  G DI+  T A+ +   +D+
Sbjct: 682 IRQAFLAPKGRKIVACDYSQIELRIMAHLSDDKGLTDAFEKGLDIHRATAAEVWGKTLDE 741

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           VS   R   K +   L Y  G   F  +A   GL
Sbjct: 742 VSDNDRRNAKAINFGLIY--GMSAF-GLAKQLGL 772


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + VS  GR+  T     A+ TGR S      QN+P   R+EE           G  I 
Sbjct: 610 LLKTVSPQGRIHTTFNQMVAA-TGRLSSQDPNLQNIPV--RTEE-----------GRAIR 655

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     R+ ++    + L+ AD + IE R++A ++ ++  I+AF +GED++ T  +
Sbjct: 656 ----------RAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVAS 705

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 706 QVFAVAPADVDAEMRRKIKAMSYGLAY 732


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 125/307 (40%), Gaps = 57/307 (18%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGER--------DLWLLDQTINDR--GYRIDLDLVLKLQ 210
           EY   D  A  +L+ +L  L D ER        +   +   +N    G +IDL+     Q
Sbjct: 473 EYASEDAAACYQLYFKLKGLVD-ERLMEIAKSVEFPFIQSLMNMELIGIKIDLEF---FQ 528

Query: 211 ELIAQERKKL---DEDIVKLTDGIIR-SSRQTYALRMY--LFLITGIDL---VDMSEGTL 261
           ELI + R++L    E+I  L +     +S Q  A  ++  L L  G         SE  L
Sbjct: 529 ELILESRERLHQISEEIFALANKRFNLNSPQQLATILFEELNLQAGKKTKSGFSTSESVL 588

Query: 262 KSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY-GASRTGR 319
            S+  +H  I ++ +     +L S+      +  LSE   +D + R    F    + TGR
Sbjct: 589 NSLYDTHPIIPKILEYREFFKLYST-----YIEPLSEHAKADLQHRIYTSFMQTGTSTGR 643

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P          +T Q                  +R   IA     LV  
Sbjct: 644 LSSKNPNLQNIP---------VKTAQGRR---------------IRRGFIAKENHLLVSL 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R+LA  + ++  I+AF    DI++ T  K F    + +++E+RAI K +   L
Sbjct: 680 DYSQIELRLLAHFSEDEAMIEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINFGL 736

Query: 440 GYQGGAK 446
            Y  G K
Sbjct: 737 IYGMGPK 743


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID- 422
           +R   IA  G KL+  D + +E RVLA ++ ++  +KA+   +D++  T  + F    D 
Sbjct: 654 IRQGFIAREGWKLLSIDYSQVELRVLASLSKDENLLKAYQEKQDLHSVTAKRIFELQEDE 713

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +VS+EQR + K++  ++ Y  G   F  +A   G+ ++   + +K
Sbjct: 714 EVSREQRIMAKIINFSIIY--GKTPF-GLAKELGISVKDAGEYIK 755


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           L G+    G + T R S      QNLP         T  +   +    I           
Sbjct: 724 LHGSFSETG-TETSRLSSSNPNLQNLPAH-------TSDVNKFDYKHPIK---------- 765

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS +       L+ +D + +E R++     +   +++F NGEDI+  T +  +N P+++V
Sbjct: 766 RSFVSRFENGVLLGSDYSALEMRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEV 825

Query: 425 SKEQRAIGKVMELALGY 441
           +KE+R   K +   L +
Sbjct: 826 TKEERQATKAVNFGLAF 842


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 27/157 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L+ L   + SDGR+  T     A+ TGR S      QN+P +                  
Sbjct: 744 LDALVHDIRSDGRIHSTFNQTIAA-TGRLSSSDPNLQNIPTRSS---------------- 786

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                LG     VR   +       +  D + IE R+LA ++ ++  I AF  G D +  
Sbjct: 787 -----LG---HRVRKAFVLPRNHLFLACDYSQIELRLLAHLSQDEHLIHAFQTGADFHAA 838

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           T A+ F+   D+V+   R+  K +   + Y  G + F
Sbjct: 839 TAARIFHVSPDEVTPALRSRAKAVNFGIVY--GQQAF 873


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  LVVAD + IE R+LA ++G++   K F    DI+  T A  F    +K
Sbjct: 609 IRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEK 668

Query: 424 VSKEQRAIGKVMELALGY 441
           V  + R   K +   + Y
Sbjct: 669 VDPQHRRAAKTINFGVLY 686


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 127/311 (40%), Gaps = 61/311 (19%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLV 206
           +L  EY   D + T +L ++  PL +    L L  +           I   G +ID+D++
Sbjct: 493 ELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVL 552

Query: 207 LKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEG 259
               + I ++ + L+  I     VK     I S +Q   L   LF    +D        G
Sbjct: 553 SVFSKTIEEDVRNLEASIYEKAGVKFN---IASPKQ---LGEVLFDKLQLDPKAKKTKTG 606

Query: 260 TLKS----ILSHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             K+    +L+ +N + + +D++    L +L S+      ++ L   ++    L  T   
Sbjct: 607 QYKTGEDVLLTLANKSDIVQDILDFRQLQKLKST-----YVDALPGLINPTTGLIHTSYN 661

Query: 312 YGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              + TGR S      QN+P R ER  E+                         ++ I  
Sbjct: 662 QAVAATGRLSSTNPNLQNIPIRTERGREVR------------------------KAFIPR 697

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           S    ++ AD + IE R++A ++ +   ++AF  G DI+  T AK +   +D+VS +QR 
Sbjct: 698 SENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRR 757

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 758 NAKAVNFGIIY 768


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G +L+ AD + IE R+L  ++GE+   +A+ +G+D++  T         D+
Sbjct: 752 IRKAFLPQEGWQLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLEK--DE 809

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           VS ++R +GK +   + Y  GA+ F
Sbjct: 810 VSADERRLGKTINFGVIYGMGAQRF 834


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 110/258 (42%), Gaps = 39/258 (15%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGI 251
           + + G   D D++ K+ + +  E  ++ E I      D  + S +Q   L+++LF   G+
Sbjct: 408 MENNGIGFDKDVMAKVADKLQDEVAEISEKIKTFVGYDINLNSPKQ---LQVFLFEELGV 464

Query: 252 DLVDMS-------EGTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           + +  +       E +L++++  + +   + +D+++ R  +   +   L  L + V +DG
Sbjct: 465 EGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTYAL-PLKDYVLADG 523

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  + +  G + TGR S      QN+P +                        G     
Sbjct: 524 RIHSSFRQTGTA-TGRLSSVNPNMQNIPMK------------------------GKWGVK 558

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G   V  D + IE R+LA + G++   +A+ N EDI+  T +  F    +K
Sbjct: 559 LREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIFGVAPEK 618

Query: 424 VSKEQRAIGKVMELALGY 441
           V    R + K +   + Y
Sbjct: 619 VDSGMRRLAKAVNFGILY 636


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +A + + ++++ D + IE RVLA ++G++  I+AF  GEDI+  T ++ F  P +
Sbjct: 624 IRGVFVAESPEHVLLSGDYSQIELRVLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPE 683

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 684 QVTPLLRDRAKAVNFGIIY 702


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 26/141 (18%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T +   A+ TGR S      QN+P                NR         +  
Sbjct: 755 DGRIHTTFEQTIAA-TGRLSSSDPNLQNIP----------------NRN--------VVG 789

Query: 362 DCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R+  I  N   +L+  D + +E R++A  + ++  IKAF +G D +    +  +  P
Sbjct: 790 REIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASLVYKIP 849

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           +++VS +QR+  K M   L Y
Sbjct: 850 VEQVSPDQRSHVKAMSYGLAY 870


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTP 420
           C R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ T  ++  + P
Sbjct: 669 CPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVP 728

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           ++ V+   R   K +  ++ Y  G    + +A+  G+ +Q+ +Q ++S
Sbjct: 729 VEHVTHADREQTKKVVYSVVYGAGK---ERLAACLGVPVQEAAQFLES 773


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++ +   ++AF+ G+DI+  T A+     I++
Sbjct: 694 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSIEE 753

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ E R   K +   L Y  G   F  +A   G+
Sbjct: 754 VTSEDRRRAKAINFGLIY--GMSAFG-LAKQIGI 784


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 115/274 (41%), Gaps = 42/274 (15%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITG 250
           TI   G  +D++ + +L+ ++++E   L +DI  L      I+S +Q   L   L+   G
Sbjct: 485 TIERNGMPLDVEDLQELERILSEELAMLTDDIYTLAGAPFNIKSPKQ---LSEVLYNKLG 541

Query: 251 IDLVDMSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +  +D +  T   +L      H  I ++     + +L S+    L      +   S  R+
Sbjct: 542 LKPIDKARSTKAEVLEALSGEHEIIEKILAFRAVEKLLSTYVKALP----RQVDPSTSRI 597

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR +      QN+P   RSE           RG  +            
Sbjct: 598 HPTFNQMG-TVTGRLACQDPNLQNIPI--RSE-----------RGRLLRKAF-------- 635

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
            C    N    + AD + IE R LA ++ ++    AF + EDI+  T ++ F+ P+++V+
Sbjct: 636 -CNTHQNNY-FLSADYSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVT 693

Query: 426 KEQRAIGKVMELALGY----QGGAKVFKTMASHC 455
           K+QR   K +   + Y     G +K+ K   S  
Sbjct: 694 KQQRMQAKTVNFGIIYGQQAYGLSKILKISVSEA 727


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 25/126 (19%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R ER  E+                         R+ I       
Sbjct: 674 TGRLSSNNPNLQNIPIRTERGREVR------------------------RAFIPRDENHV 709

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A I+ E+  ++AF  G DI+  T AK +   I++V+  QR   K +
Sbjct: 710 LLSADYSQIELRIIADISKEENMLQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAV 769

Query: 436 ELALGY 441
              + Y
Sbjct: 770 NFGIIY 775


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 40/82 (48%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE RVLA  + +     AFA  EDI+  T A+ F    + 
Sbjct: 653 IRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFCDAFAKDEDIHTRTAAEVFGLFPEM 712

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+ E R   K +   + Y  GA
Sbjct: 713 VTPEMRRQAKAINFGVIYGQGA 734


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 25/149 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L + +  +GR+  +    G + TGR S      QN+P                     
Sbjct: 610 DKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP--------------------- 647

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I  P G     +R   +A     +V AD + IE R++A ++ +   +KAF  G DI+  T
Sbjct: 648 IKSPEGRK---IRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSAT 704

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            A+     +D V+ EQR   K +   L Y
Sbjct: 705 AAEVLGISLDMVTSEQRRRAKAINFGLIY 733


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + IE RVLA I G+    +AF + ED++ TT  K FN   D+V+   R   K +
Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAV 707

Query: 436 ELALGY 441
              + Y
Sbjct: 708 NFGIVY 713


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G   + AD + IE  +LA ++G+    +AF  GED++  T +  F  P + 
Sbjct: 658 IREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREGEDVHRATGSLLFGVPPET 717

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V+ EQR I K +   + Y  G   F+
Sbjct: 718 VTPEQRRIAKTINFGVIY--GMSAFR 741


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 55/241 (22%)

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L+  L  + G+ L  +S+  L     H  + Q+     LN   +     + + ++ E + 
Sbjct: 146 LKSKLSAVLGVKLESVSKNALSEFAGHHPVVQM----YLNWKKAEKRRQM-ITSIQEKMR 200

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQN--LPRQERSEEILTQTIQALNRGETIADPLG 358
            DG ++ +    GA  TGR +   F P N  +P+ ++                       
Sbjct: 201 PDGFVKASYMQLGAE-TGRMT--CFNPNNQQIPKDKQ----------------------- 234

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 R C+ A  G  +V AD   +E R+ A +A +   I+AF +GED++  T A+A  
Sbjct: 235 -----FRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLHTVT-AEAIG 288

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA--SHCGLDLQQFSQNVKSTSTFEDWE 476
                     R I K     L Y  GAK  +  A  S+  + L++ +Q V+S     DW 
Sbjct: 289 CT--------RQIAKSANFGLLYGSGAKGLRNYAAGSNVSMTLEE-AQKVRS-----DWF 334

Query: 477 Q 477
           Q
Sbjct: 335 Q 335


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  LV AD + IE R+LA ++ E   ++ + N +DI+  T    F    + 
Sbjct: 730 IRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLVETYRNNQDIHAVTAKLLFEK--ET 787

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           V+ E+R +GK +   + Y  G + F   A     + ++F   +K
Sbjct: 788 VTPEERRLGKTINFGVIYGMGPQRFAREAGVSAAEGKEFIDRLK 831


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE RVLA I+G+    +AF  G DI+  T A  F    +KVS E R + K++
Sbjct: 630 FIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSPELRRMAKMI 689

Query: 436 ELALGY 441
              L Y
Sbjct: 690 NFGLLY 695


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C +         AD + IE R++A ++G++  I+AF  G DI+  T AK ++  I  
Sbjct: 681 IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIAD 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E+R   K     + Y
Sbjct: 741 VTSEERKKAKQANFGIIY 758


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 137/328 (41%), Gaps = 60/328 (18%)

Query: 133 ARFCKGSIDSPPYDCTRANHV----QAWQLFGEYCKRDVE--ATRELFKRL-IPLSDGER 185
           A + KG+    P +   A H+    +A     E C + ++     ELF++L +PLS    
Sbjct: 427 AVYGKGAKRKLPEEKRYAEHISRKAEAIDALCEPCTKALKNNGQLELFEQLELPLS---- 482

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRM 243
            L L D      G ++D D + ++ E       ++++ I  +  T+  I S +Q   L +
Sbjct: 483 -LILADMEYT--GVKVDTDRLKEMGEEFKLRLHEIEQRIYSMAGTEFNINSPKQ---LGV 536

Query: 244 YLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTL 295
            LF   G+ ++  ++    T   +L     +H  + ++     L +L S+      +  L
Sbjct: 537 ILFEKMGLPVIKKTKTGYSTSADVLEKLEPAHEIVREILHYRQLGKLQST-----YIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIA 354
            + V  DG++         ++TGR S      QN+P R E   +I               
Sbjct: 592 LKVVHQDGKVHTRFN-QALTQTGRLSSTDPNLQNIPIRMEEGRKI--------------- 635

Query: 355 DPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     R   + S  G  +  +D + +E RVLA I+G++  I+AF  G DI+  T 
Sbjct: 636 ----------RQAFVPSEEGWLIFSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTA 685

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + F+   ++V+ E R   K +   + Y
Sbjct: 686 MEVFHVKAEEVTSEMRRQAKTVNFGIVY 713


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 126/310 (40%), Gaps = 73/310 (23%)

Query: 162 YCKRDVEATRELFKRL---IPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+KR    +P+    R   ++D+        +  RG ++D + + +L  
Sbjct: 488 YAAEDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLST 547

Query: 212 LIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL-KSILSHS 268
             A +   L+ +I  L  T   I S +Q   L   LF     D + +  G   KS +  +
Sbjct: 548 EFAGQIAGLEGEIHTLAGTPFTIGSPKQ---LGEILF-----DRLGLKGGRKGKSGVYST 599

Query: 269 NITQLAKDLILNRLASSGS-----AILKLNTLSEAVSS------------DGRLRGTLQF 311
           ++T+L       RLA  G       IL+   LS+  S+             GR+  +   
Sbjct: 600 DVTEL------ERLARDGGEEIVRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSL 653

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA +TGR S      QN+P       I T+  + L                 R   IA 
Sbjct: 654 TGA-QTGRLSSTEPNLQNIP-------IRTEVGRQL-----------------REAFIAE 688

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  L+ AD + IE R+ A +A       AFANG+DI+  T  + F     +V+++ R  
Sbjct: 689 DGHVLIAADYSQIELRLAAHMADVPALRDAFANGDDIHSLTAKELFG----EVNRDTRGR 744

Query: 432 GKVMELALGY 441
            K +  A+ Y
Sbjct: 745 AKTINFAILY 754


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I         AD + IE R++A ++ ++  ++AF +G DI+  T AK ++ P+++
Sbjct: 681 IRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMMEAFRSGHDIHRATAAKIWHVPMEE 740

Query: 424 VSKEQRAIGKVMELALGY 441
           VS  QR   K     + Y
Sbjct: 741 VSDAQRKKAKQANFGIIY 758


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +   GK L   D +G E R++AW +G++   + F  G D++  T +     P D+
Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKPEDE 602

Query: 424 VSKEQRAIGKVMELALGYQG 443
           + K++R   K     + Y G
Sbjct: 603 IVKKERTDAKAGNFGISYGG 622


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + + +DGR+  T     A+ TGR S      QN+P       + T   +A+  G    
Sbjct: 631 LIKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRHG---- 678

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                        ++    + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 679 ------------FVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 726

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           + F      V  E R   K M   L Y
Sbjct: 727 QVFGVERSAVDAEMRRKIKAMSYGLAY 753


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C +         AD + IE R++A ++G++  I+AF  G DI+  T AK ++  I  
Sbjct: 681 IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIAD 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ E+R   K     + Y
Sbjct: 741 VTSEERKKAKQANFGIIY 758


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++ +   + AF+ G+DI+  T A+     I++
Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ E R   K +   L Y  G   F  +A   G+
Sbjct: 752 VTSEDRRRAKAINFGLIY--GMSAF-GLAKQIGI 782


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  +   ++++ D + IE RVLA +A +   I AF +  DI+  T ++ F  P+D
Sbjct: 631 IRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVD 690

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R+  K +   + Y
Sbjct: 691 EVTSTMRSNAKAVNFGIVY 709


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  +   ++++ D + IE RVLA +A +   I AF +  DI+  T ++ F  P+D
Sbjct: 631 IRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVD 690

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R+  K +   + Y
Sbjct: 691 EVTSTMRSNAKAVNFGIVY 709


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +     KL+ AD + IE R+LA ++GE+   +A+ NG+D++  T         + 
Sbjct: 730 IRKAFLPQENWKLISADYSQIELRILAHLSGEEILQEAYKNGDDVHTLTAKILLEK--ES 787

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++  +R +GK +   + Y  GA+ F   A   GL+
Sbjct: 788 INSNERRLGKTINFGVIYGMGAQRF---ARSTGLN 819


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S+ + L++ AD + +E R++A ++G++  I AF +GED++  T A+ F   + 
Sbjct: 719 IRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDVHAATAARLFGKEVA 778

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V  ++R   K     + Y
Sbjct: 779 EVDSDERRKAKTANFGIIY 797


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 27/147 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L++ + +DG++  +   + A++TGR S      QN+    R EE                
Sbjct: 555 LTKHIHADGKIHTSFNQH-ATQTGRLSSSDPNLQNISV--RDEE---------------- 595

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 +  +R   +AS G  L+  D + IE RVL+++A E   ++AF  G DI+  T  
Sbjct: 596 ------TRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAK 649

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             F   +D V+   R   K +   + Y
Sbjct: 650 AIFG--VDDVTSTMRRQAKSVNFGIVY 674


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++ +   + AF+ G+DI+  T A+     I++
Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V+ E R   K +   L Y  G   F  +A   G+
Sbjct: 752 VTSEDRRRAKAINFGLIY--GMSAF-GLAKQIGI 782


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S G   +V AD + IE R+LA  + E   I+A+  GEDI+  T ++ F   ++
Sbjct: 591 LRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLE 650

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E RA  K +   + Y
Sbjct: 651 EVTPEMRAHAKSVNFGIVY 669


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  +   ++++ D + IE RVLA +A +   I AF +  DI+  T ++ F  P+D
Sbjct: 631 IRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVD 690

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R+  K +   + Y
Sbjct: 691 EVTSTMRSNAKAVNFGIVY 709


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 609 LIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R+  K +   + Y
Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   + 
Sbjct: 609 LIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDVS 668

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R+  K +   + Y
Sbjct: 669 QVTPTMRSQAKAVNFGIIY 687


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 33/167 (19%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           S  GR+   + F   + TGR++      QN PR++                    DP+G 
Sbjct: 345 SVTGRIHPDM-FPLGTETGRFAARNPNLQNCPRKDN-------------------DPVG- 383

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               VR+  IA  GK L+  D + IE RV A+   ++  ++ +  G DI+  T +  +  
Sbjct: 384 ----VRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLETYRTGGDIHAQTTSVIYRI 439

Query: 420 PIDKVS-------KEQRAIGKVMELALGYQGGAK-VFKTMASHCGLD 458
           P ++ +       KE+RAI K     + Y    K + + +    GLD
Sbjct: 440 PFEEAADKSAQHYKERRAIAKNCNFGVFYGLFPKGLHRNLKFKAGLD 486


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR C IA  G  +   D    E RVLA ++G+   I+AF NG D++  T A A   P   
Sbjct: 375 VRRCFIAEPGDVMASVDYQAQELRVLAALSGDRNMIEAFENGADLHQMT-ADAAQVP--- 430

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
                R +GK       Y GGAK  
Sbjct: 431 -----RKVGKTANFQKVYGGGAKAL 450


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G +LV AD + +E R++A IAG++   +AF  G DI+  T A+        
Sbjct: 660 IRKGFIADGGFRLVAADYSQLELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDEST 719

Query: 424 VSKEQRAIGKVMELALGY 441
           V   QR   K +   + Y
Sbjct: 720 VDVNQRRAAKTVNFGVLY 737


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I S     ++AD   IE ++ A I  ++  +KA+ N  D++  T +      ID+
Sbjct: 53  IREIFIPSENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGIDE 112

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           ++KE R + K +   L Y       +T A+
Sbjct: 113 INKEDRHVAKAINFGLLYGMNYVNLRTYAN 142


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE R++A +A     I+AF +G DI+  T A+ F  P++ 
Sbjct: 686 IRHAFIAEPGHVLLSADYSQIELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEG 745

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 746 MDPMLRRRAKAINFGIIY 763


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 116/289 (40%), Gaps = 56/289 (19%)

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           EA R+L++ +      E+ L  + + +  RG R+D D +  L E +A     L+ +I +L
Sbjct: 500 EARRKLYEEV------EKPLSAVLKRMEVRGVRLDSDYLRGLSEALAGRIATLEAEIHRL 553

Query: 228 T--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
              +  IRS  Q   L   L+     D + ++ G  K+ L+    T ++    L      
Sbjct: 554 AGREFAIRSRDQ---LETVLY-----DELGLASGK-KTKLTGKRSTAVSALEPLRNEHPI 604

Query: 286 GSAILK-----------LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-R 332
             A+L+           L+ L   V+   GRL  T     A+ TGR S      QN+P R
Sbjct: 605 IPALLEYRELEKLRGTYLDPLPNLVNPRTGRLHTTFSQTTAA-TGRLSSLNPNLQNIPIR 663

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            E   EI                         R   IA  G  L+ AD + IE R+LA I
Sbjct: 664 SELGREI-------------------------RKGFIADEGYCLISADYSQIELRLLAAI 698

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           A +    +AF  G DI+  T A+      D ++  QR   K +   + Y
Sbjct: 699 ADDPLMQQAFREGADIHRRTAAQVLGLAEDAITPNQRRAAKTVNFGVLY 747


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 28/141 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GR+  +      + TGR S      QN+P R ER  E                       
Sbjct: 663 GRVHTSFN-QAVAATGRLSSNNPNLQNIPIRTERGRE----------------------- 698

Query: 362 DCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             VR   I  +   +++ AD + IE R++A I+ E+  + AF NG DI+  T A+ +   
Sbjct: 699 --VRKAFIPRDENHILLSADYSQIELRIIADISKEENMLDAFKNGIDIHTATAARVYGIA 756

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           I++V+  QR   K +   + Y
Sbjct: 757 IEEVTPTQRRNAKAVNFGIIY 777


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 28/142 (19%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360
           DG++  T Q    + TGR S      QN+P R E   ++                     
Sbjct: 626 DGKVHTTFQQM-VTATGRLSSTEPNLQNIPIRMEEGRKL--------------------- 663

Query: 361 SDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               R   + S G  +L  AD + IE RVLA  + +    ++F  GED++  T ++ F  
Sbjct: 664 ----RKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDVHARTASEVFGV 719

Query: 420 PIDKVSKEQRAIGKVMELALGY 441
           P+++V+ + R   K +   L Y
Sbjct: 720 PLEQVTPDMRRKAKAVNFGLMY 741


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    ++  AD + IE RVLA I G+   ++AF  G DI+  T  K FN   +
Sbjct: 635 IRKAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVERE 694

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ + R   K +   + Y
Sbjct: 695 EVTSDMRRQAKAVNFGIVY 713


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI++ T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHIETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 35/184 (19%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC IA +G   +  D + IE R+LA  + ++  ++AF N EDI+  T    F     + 
Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDEDIHARTAIMIFG----EN 704

Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           + E R++ K +   L    GY+  ++  K  AS     ++++  N  S  ++ +  + E+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKEYIEKYFANFTSIKSYFERVKNEA 764

Query: 481 H------HLWMQDQYPEFA--------------VKDKLIGTACELVKKAWRAKHQGVLQL 520
                   L  + +Y +FA              +   L G+A +++K A       +L+L
Sbjct: 765 KINGYISTLSGRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKLA-------MLEL 817

Query: 521 WKDL 524
           +K+L
Sbjct: 818 YKEL 821


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G ++  AD + IE R+LA ++ +++ I+ F +GEDI+  T ++ F    + 
Sbjct: 650 IREAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIELFKSGEDIHKRTASEVFELFPEF 709

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+ E R   K +   + Y  GA
Sbjct: 710 VTDEMRRQAKAINFGIIYGMGA 731


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS   A  G  L+ AD + IE  VLA ++G+     AF NG D++ +T A  +    ++
Sbjct: 690 IRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSAFINGIDVHKSTAALIYGISPEQ 749

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V  EQR   K +   + Y  G   F+
Sbjct: 750 VKPEQRRFAKTVNFGVMY--GMSAFR 773


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  ++ AD + IE RVLA ++ +     AFA  EDI+  T A+ F    + 
Sbjct: 652 IRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDEDIHTRTAAEVFGLFPEM 711

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+ E R   K +   + Y  GA
Sbjct: 712 VTPEMRRQAKAINFGVIYGQGA 733


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G   V AD + IE RVLA  +G+   I+A+   +DI+  T ++ F+ P ++
Sbjct: 636 IRKVFVPEDGYIFVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEE 695

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K +   + Y
Sbjct: 696 VTPLQRRNAKAVNFGIVY 713


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           S  +R   I      LV AD + IE R+LA ++ E   + A+ N ED++  T    F   
Sbjct: 327 SRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLFEK- 385

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +K++ ++R +GK +   + Y  G++ F   A     + ++F
Sbjct: 386 -EKITSQERNLGKTINFGVIYGMGSQRFAREAGVTAAEGKEF 426


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R+  K +   + Y
Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 20/147 (13%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +++ SD R+  T      + TGR S      QN+P   RSEE           G  I 
Sbjct: 623 LIKSIGSDTRVHTTYA-QNVAATGRLSSNNPNLQNIPI--RSEE-----------GRRIR 668

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
               +     +S       + L+ AD + IE R++A ++G++  I+AF +GED++    +
Sbjct: 669 GAFVVGQKSTKSY------ETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGS 722

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             FN    +V+   R+  K M   L Y
Sbjct: 723 HIFNVEPQEVTSAMRSKVKAMSYGLVY 749


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 123/321 (38%), Gaps = 50/321 (15%)

Query: 162 YCKRDVEATREL---FKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208
           YC  DV  TR L    ++ +  S GE+   LLDQ           +   G RIDL  +  
Sbjct: 547 YCAMDVHLTRRLAIDLRQQLQAS-GEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDT 605

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L + + +   +L+ D  K   G+  +      L   LF   G+D               +
Sbjct: 606 LSKEMGETLTRLEAD-AKQAAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDAT 664

Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSG 322
            + +LA D     L+L     S      ++ L + V ++ GR+         + TGR S 
Sbjct: 665 VLDKLADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSS 723

Query: 323 CVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                QN+P R E S  I                         R   +      L+ AD 
Sbjct: 724 SNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEHWTLLSADY 758

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+L  ++GE+   +A+ +G+D++  T         D VS ++R +GK +   + Y
Sbjct: 759 SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLEK--DDVSADERRLGKTINFGVIY 816

Query: 442 QGGAKVFKTMASHCGLDLQQF 462
             GA+ F         D ++F
Sbjct: 817 GMGAQRFARETGVSQTDAKEF 837


>gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
 gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
          Length = 879

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 34/207 (16%)

Query: 335 RSEEILTQT--IQALNRG-ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R E+ LTQT  + ++N   + I   +       ++ I ASN + ++  D + IE RVLA 
Sbjct: 608 RYEQTLTQTGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAH 667

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           IA +   I AF +  DI+  T +     P+D+V+   R   K +   + Y  G   F  +
Sbjct: 668 IAQDKGMIDAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVY--GISDF-GL 724

Query: 452 ASHCGLD-------LQQFSQNVKSTSTF-EDWEQAESHHLWMQDQY------PEFAVKDK 497
           +++ G+        ++++ +  K    +  D  +    H +++  Y      PE   K+K
Sbjct: 725 SNNLGITRKRAKEFIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNK 784

Query: 498 LI--------------GTACELVKKAW 510
           +I              GTA +++K A 
Sbjct: 785 IIANLNARIAMNTPIQGTAADIIKIAM 811


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 131/332 (39%), Gaps = 62/332 (18%)

Query: 145 YDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           Y C RA+  +QA +      + D E   EL++ L      E+ L  +   I   G ++  
Sbjct: 462 YACERADLPLQAAEPL--RARLDQERLAELYREL------EQPLIPVLADIETAGIQVAT 513

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGI---------IRSSRQTYALRMYLFLITGIDLV 254
           D        +A + +++D D+ +L   I         I S RQ  A+   LF    +   
Sbjct: 514 DA-------LAVQSRRMDADLSELQSQIYTLAGEEFNINSPRQLSAI---LFEKLALPTR 563

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGT 308
             +  T  +  +   + +LA+   L RL     A+ KL     + L + V  D GR+  +
Sbjct: 564 KKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKLKGTYVDALPQLVRPDTGRVHTS 623

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 + TGR S      QN+P                     I  PLG     +R   
Sbjct: 624 FN-QAVAATGRLSSSDPNLQNIP---------------------IRTPLGRE---IRRAF 658

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A +G  L+ AD + IE RVLA ++ +    +AF   EDI+  T    F       + E 
Sbjct: 659 VARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHEL 718

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           R   K++  AL Y  G   F T++   G+  Q
Sbjct: 719 RRRAKIINYALLY--GKTAF-TLSRDIGVTPQ 747


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 92  KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 147

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           + E R++ K +   L Y  G   +KT++ +  ++
Sbjct: 148 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIE 178


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I 
Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R+  K +   + Y
Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 13/170 (7%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   +A  G  L+  D + IE R+LA  + ++  +KAF +G+DI+  T  K F    ++
Sbjct: 652 VRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHYETALKLFG---EQ 708

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            +  +R++ K +   L Y  G    K ++   G+ + +  + ++  S F  +   +++ +
Sbjct: 709 EAASKRSVAKSINFGLLYGMGP---KRLSETLGISMAEAKRYIE--SYFATFPTIKAYVM 763

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            + +Q       + L+G      K+ +  +H   +Q    L E    V Q
Sbjct: 764 EVAEQAKTTGYVETLLGR-----KRFFDFEHANAMQYAGYLREAVNTVFQ 808


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 28/154 (18%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR S      QN+P + +              GE I           RS  IA  G
Sbjct: 589 ATATGRLSSSNPNLQNIPIRSKD-------------GEKI-----------RSAFIAEKG 624

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            KL+ AD + +E ++LA IA      +AFA G DI+V T  + F    + +  E R   K
Sbjct: 625 HKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFGEYYE-IDYELRRRAK 683

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            +   + Y  G+     +A + G+  ++ S+ V+
Sbjct: 684 SINFGIIYGMGS---YGLARNIGISRREASEYVE 714


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISEDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRRI- 636

Query: 355 DPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     R    +S+   ++  AD + IE RVLA I  ++   +AF N EDI+  T 
Sbjct: 637 ----------RKAFKSSDDNNVIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATA 686

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
            K FN   D+V    R   K +   + Y
Sbjct: 687 MKVFNVQPDEVDSLMRRQAKAVNFGIVY 714


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  L  AD + IE R+LA ++ E   I+ F +GED++  T    F     +
Sbjct: 693 IRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLIECFRSGEDVHTLTARLLFEK--QE 750

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           V+ E+R + K +   + Y  GA+ F   A     + ++F
Sbjct: 751 VTSEERRLAKTINYGVIYGMGAQRFARTAGVSLAEAKEF 789


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 54/222 (24%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           G  +  VR C +A  G  L+  D + IE R+LA  + +   + AF   EDI+  T    F
Sbjct: 700 GTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAAFRADEDIHARTAISIF 759

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQ 460
                      R I K +   L Y  GA     ++   G+                  ++
Sbjct: 760 G----DAQPAHRTIAKSINFGLIYGMGAG---KLSDSLGIARAEAKGYIERYFAAFSTIK 812

Query: 461 QFSQNVKSTST-------------FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           +F Q++KS +              + D+  A ++ ++    Y   AV  K  G+A +++K
Sbjct: 813 EFLQSIKSDAKADGYVSTLFGRRRYFDFANARNNMVYAS--YEREAVNTKFQGSAADIIK 870

Query: 508 KAW---------------RAKHQGVLQLWKDLTEGFACVVQE 534
           KA                +   + + ++  DL +GF    QE
Sbjct: 871 KAMVDISPLLNGEARLILQIHDELIFEVRDDLAQGFGARAQE 912


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S+   + +  D + IE RVLA ++G+   IKAF    DI+  T ++ F+ P +
Sbjct: 642 IRQLFVPSSENHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFE 701

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+  QR+  K +   + Y
Sbjct: 702 DVTSMQRSNAKAVNFGIVY 720


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 1015

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A+ G +L+ AD   IE  VLA ++ +   + AF    DI+  T A  FN  ID 
Sbjct: 776 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 835

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V    R I K +   + Y  G   F+
Sbjct: 836 VQPAMRRIAKTINFGIVY--GMSAFR 859


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A+ G +L+ AD   IE  VLA ++ +   + AF    DI+  T A  FN  ID 
Sbjct: 758 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 817

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V    R I K +   + Y  G   F+
Sbjct: 818 VQPAMRRIAKTINFGIVY--GMSAFR 841


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  +V AD + IE R+LA ++ E   I+A++N +DI+  T    F+   + 
Sbjct: 734 IRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--ED 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQ 464
           V+ E+R   K +   + Y  G   F   +   G+D       +Q+F+Q
Sbjct: 792 VTSEERRFAKTINFGVIYGMGVLKF---SRSTGVDKNIANEFIQKFNQ 836


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 21/231 (9%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+  D + IE R+LA  + +   I+AF    DI++ T  K F    ++
Sbjct: 657 IREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEAFHKEADIHLETAKKIFG---EE 713

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           +++E+R++ K +   L Y  GA+           + + + QN      F+ +   ++   
Sbjct: 714 LAQEKRSVAKSINFGLIYGMGARKLSETLQINHQEAKSYIQNY-----FQSFPTVKN--- 765

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK--DLTEGFACVVQEGGSISAR 541
           ++++Q  EF +K+   G +  L+ +  +   + + +  K   L EG   + Q     SA 
Sbjct: 766 FLKEQ-EEFILKN---GYSLTLLGRMRKFSFENIQEFQKVAFLREGINAIFQG----SAA 817

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
            +  +  + + + K +  ++L     L++   K          +Q+M   T
Sbjct: 818 DIIKLAMIQITQEKLESKLLLQMHDELIFEAPKNIAETEAKKIAQIMESIT 868


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 27/137 (19%)

Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             + TGR S      QN+P R E   EI  +   A N             DC+       
Sbjct: 673 AVTSTGRLSSTNPNLQNIPVRDELGREI-RKAFTAEN------------EDCI------- 712

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                  AD + IE R++A ++ +   I+AF +G DI+  T AK +  P+++V+ + R  
Sbjct: 713 ----FFSADYSQIELRIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRK 768

Query: 432 GKVMELALGYQGGAKVF 448
            K     + Y  G  VF
Sbjct: 769 AKTANFGIIY--GISVF 783


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  L+ AD + IE R+L  ++GE+   +A+ +G+D++  T     +   D+
Sbjct: 726 IRKAFLPQAGWTLLSADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLLLDK--DE 783

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           VS ++R +GK +   + Y  GA+ F
Sbjct: 784 VSADERRLGKTINFGVIYGMGAQRF 808


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  +V AD + IE R+LA ++ E   I+A++N +DI+  T    F+   + 
Sbjct: 734 IRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--ED 791

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQ 464
           V+ E+R   K +   + Y  G   F   +   G+D       +Q+F+Q
Sbjct: 792 VTSEERRFAKTINFGVIYGMGVLKF---SRSTGVDKNIANEFIQKFNQ 836


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 28/140 (20%)

Query: 303 GRLRGTL-QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           GRL  T  QF  A  TGR S      QN+P                     I  PLG   
Sbjct: 666 GRLHTTFNQFITA--TGRLSSSNPNLQNIP---------------------IRSPLG--K 700

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           +  R+ I ++    L+ AD + IE R+ A I+G+   ++AF N EDI+  T    F+T  
Sbjct: 701 EIRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLLEAFRNREDIHTATAKVIFDT-- 758

Query: 422 DKVSKEQRAIGKVMELALGY 441
           D+++ + R   K +   + Y
Sbjct: 759 DEITSDMRRKAKEVNFGVLY 778


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 27/137 (19%)

Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             + TGR S      QN+P R E   EI  +   A N             DC+       
Sbjct: 673 AVTSTGRLSSTNPNLQNIPVRDELGREI-RKAFTAEN------------EDCI------- 712

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                  AD + IE R++A ++ +   I+AF +G DI+  T AK +  P+++V+ + R  
Sbjct: 713 ----FFSADYSQIELRIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRK 768

Query: 432 GKVMELALGYQGGAKVF 448
            K     + Y  G  VF
Sbjct: 769 AKTANFGIIY--GISVF 783


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 25/171 (14%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS  I + G  L+ AD + IE R+LA  + ++  ++AF + EDI+  T A+ F     +
Sbjct: 662 IRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDDEDIHRRTAAEMFGVSPIE 721

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           V+ E R   K +   + Y  G    A+  +         + ++ Q  +    F D     
Sbjct: 722 VTPEMRRQAKTINFGIIYGMGPFGLAQRLRISTKTARTAIDKYFQGYRGVRRFIDTTIEL 781

Query: 480 SHHLWMQDQY-------PEFAVKDKLI--------------GTACELVKKA 509
           +  L   +         PE   ++K I              GTA +L+KKA
Sbjct: 782 ARRLGYSETLLGRRRFIPELQSRNKTIRQLGERLAINTPLQGTAADLIKKA 832


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F   +  
Sbjct: 612 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 671

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
               +RA  K +   + Y  G   F  +A + G+  Q+ SQ V     F  + + +S+
Sbjct: 672 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV--AQYFRSYPEIKSY 722


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +AS    L+ AD + IE R+LA +A E   I+AF  G DI+  T  + F+   D
Sbjct: 621 VIRKAFVASPQHTLMSADYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHD 680

Query: 423 KVSKEQRAIGKVMELALGY 441
            V    R   K +   + Y
Sbjct: 681 HVDSNMRRSAKTVNFGIVY 699


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 650 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 709

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++ + R I K +   + Y+
Sbjct: 710 ITPDLRRIAKSINFGIIYR 728


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           +L+ AD + IE R++A  + ++  ++AF NG DI+ TT AK F   +D V    R   K 
Sbjct: 708 QLMAADYSQIELRIMAAFSQDEAMMEAFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKE 767

Query: 435 MELALGY 441
           +   + Y
Sbjct: 768 VNFGIIY 774


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++ + R I K +   + Y+
Sbjct: 729 ITPDLRRIAKSINFGIIYR 747


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  +V AD + IE R+LA ++ E   ++A+   EDI+  T    F    D+
Sbjct: 728 IRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQAYKQNEDIHTVTAKLVFEK--DE 785

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+ E+R   K +   + Y  G+  F   A   G+D
Sbjct: 786 VTSEERRFAKTINFGVIYGMGSLKF---ARSTGVD 817


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 47/199 (23%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G      D + IE R+LA  + ++  + AF N EDI+  T    F     + 
Sbjct: 649 KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTNDEDIHARTAIMIFG----ES 704

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473
           + E R++ K +   L Y  G   +KT++ +  ++       ++++ +N  S    FE   
Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              D+E A+   + M   Y   ++   L G+A +++K A     
Sbjct: 762 NEAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADIIKLA----- 813

Query: 515 QGVLQLWKDLTEGFACVVQ 533
             +L++ K+L E    ++Q
Sbjct: 814 --MLEINKELNEDKKLILQ 830


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F   +  
Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 685

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
               +RA  K +   + Y  G   F  +A + G+  Q+ SQ V
Sbjct: 686 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV 723


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F   +  
Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 685

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
               +RA  K +   + Y  G   F  +A + G+  Q+ SQ V
Sbjct: 686 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV 723


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
           A   +R   IAS G  L+  D + IE R+LA  + +   + AF  G DI+  T  K F  
Sbjct: 660 AGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIFG- 718

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446
             ++ +K  R I K +   L Y  G++
Sbjct: 719 --EREAKAHRGIAKTINFGLIYGMGSR 743


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 29/167 (17%)

Query: 276 DLILN-RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           D IL  R  S   +   LN L+  ++ D R+  T +  G + TGR S      QN+P   
Sbjct: 488 DYILKYRELSKLKSTYTLNLLN-YMADDKRIHTTFKQTGTA-TGRISSINPNLQNIPVG- 544

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                   +    +R C  A  G + V  D + IE R+LA ++ 
Sbjct: 545 -----------------------SIYGKRIRECFEAEKGYRFVSFDYSQIELRILASLSN 581

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++  I AF N EDI+  T  + F   +++V  + R + K +   + Y
Sbjct: 582 DENLIDAFINDEDIHNKTAKEIFG--VEEVDPKHRRLAKAVNFGIIY 626


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KLV AD + +E +++A IAG      AFA G+DI+  T  + F    D 
Sbjct: 611 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFGD--DV 668

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
              E R   K +   + Y  G   F  +A + G+  Q+ +Q V+
Sbjct: 669 TDPELRRRAKSINFGIIY--GMSPF-GLAKNVGITRQEATQYVE 709


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   IA   G  L+ AD + IE R+LA ++ +     AFA  +DI+  T ++ F+ P+ 
Sbjct: 686 IRKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMG 745

Query: 423 KVSKEQRAIGKVMELALGY 441
            V++E R   K +   + Y
Sbjct: 746 NVTREMRRRAKAVNFGIVY 764


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  N    L+ AD + IE RVLA I+ ++    AF  G+DI+  T ++ F    D
Sbjct: 625 IRRAFITENEDWVLLAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPD 684

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   KV+   + Y
Sbjct: 685 EVTPNMRRHAKVINFGIAY 703


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            VR   +A  G KLV  D + IE R+LA  + +   ++AF  G DI++ T  K F    +
Sbjct: 662 SVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNKGTDIHMATAVKLFG---E 718

Query: 423 KVSKEQRAIGKVMELALGYQGGAK 446
           + +K +R   K +   L Y  G K
Sbjct: 719 EEAKAKRNFAKSVNFGLLYGMGPK 742


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F   +  
Sbjct: 615 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 674

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
               +RA  K +   + Y  G   F  +A + G+  Q+ SQ V
Sbjct: 675 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV 712


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 12/96 (12%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR C +A  G  +   D    E RVLA ++G+   I+AF  G D++  T A A   P   
Sbjct: 380 VRRCFLAEPGHVMSSIDYQTQELRVLAALSGDKTMIEAFKTGADLHQMT-ADAAQVP--- 435

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                R IGK+      Y GGA   KT+A    +D 
Sbjct: 436 -----RKIGKMANFLTVYGGGA---KTLAEQANIDF 463


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R LA ++ ++    AFA+ ED++  T ++ F+ P+++V+K+QR   K +   
Sbjct: 647 ADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFG 706

Query: 439 LGY----QGGAKVFKTMAS 453
           + Y     G +K+ K   S
Sbjct: 707 IIYGQQAYGLSKILKISVS 725


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I      LV AD + IE R+LA ++ E   + A+ N ED++  T    F    ++
Sbjct: 717 IRQAFIPQKDWLLVSADYSQIELRILAHLSQESVLLNAYQNAEDVHTVTAKLLFEK--EE 774

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           ++ ++R +GK +   + Y  G++ F   A     + ++F
Sbjct: 775 ITPQERNLGKTINFGVIYGMGSQRFAREAGVSATEGKEF 813


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 59/307 (19%)

Query: 160 GEYCKRDVEATRELFKRLIPL---SDGERDLWLLD-------QTINDRGYRIDLDLVLKL 209
            EY   D + T +L+++L PL      ER  + ++         +   G ++D   + + 
Sbjct: 513 AEYAAEDADVTWQLWEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEF 572

Query: 210 QELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS---- 263
              +++E    ++ I +L   +  + S RQ   L   LF     D + +SE   K+    
Sbjct: 573 STQLSKEMANHEQTIYRLAGQEFNLNSPRQ---LGEILF-----DKLKISENAKKTKTGQ 624

Query: 264 -ILSHSNITQLAKDL-ILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASR 316
              +   +  LA D  I+ RL     A    +T ++A+        GR+  T      + 
Sbjct: 625 YATNEQTLMDLAADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFN-QAVTT 683

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR +      QN+P R E+ +EI                         R   +  N   
Sbjct: 684 TGRLNSQNPNLQNIPIRTEQGKEI-------------------------RKAFVPRNEDY 718

Query: 376 -LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE R++A ++ E   ++ F    DI+  T A+ +  P+D+V+ E R   K+
Sbjct: 719 VLLSADYSQIELRIIAALSHEQGMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKM 778

Query: 435 MELALGY 441
           +   + Y
Sbjct: 779 VNYGIAY 785


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 54/243 (22%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           + ++ L ++V+ DGR+  T     A+ TGR S      QN+P       I T        
Sbjct: 242 VTVDGLIKSVADDGRIHTTYSQTIAA-TGRLSSTDPNLQNVP-------IRTA------- 286

Query: 350 GETIADPLGLASDCVRSCIIASNG------KKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                     A   +R   +   G       +L+ AD + IE R++A ++ ++  I+AF 
Sbjct: 287 ----------AGRRIRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFR 336

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  D +  T A+ F      VS EQRA  K M   L Y              GL     S
Sbjct: 337 SQHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAY--------------GLSAYGLS 382

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
             ++ ++     ++A+     M D +  F  V+D L G   +  K  + A   G  +   
Sbjct: 383 GQLRIST-----DEAKG---LMDDYFAGFGGVRDYLAGVVDQARKDGYTATILGRRRYLP 434

Query: 523 DLT 525
           DLT
Sbjct: 435 DLT 437


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   ++ +G  LV  D + IE R++A ++ E   I AF  GEDI+  T ++ F  P ++
Sbjct: 617 IRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEE 676

Query: 424 VSKEQRAIGKVMELALGY 441
           V    R+  K +   + Y
Sbjct: 677 VDDLLRSRAKAVNFGIIY 694


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           + +R   IA  G K++ AD + IE R+LA +A      +AFANG+DI+  T  + F   +
Sbjct: 606 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFG--V 663

Query: 422 DKVSKEQRAIGKVMELALGY 441
            ++ ++ R   K +   + Y
Sbjct: 664 QEIDEQLRRKAKSINFGIIY 683


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 26/141 (18%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T Q   A+ TGR S      QN+    R+ E                       
Sbjct: 606 DGRIHTTFQQTAAA-TGRLSSTDPNLQNI--HARTAE----------------------G 640

Query: 362 DCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R+  +   G + ++ AD + IE R++A ++G+   I+AF  G D++    ++ +  P
Sbjct: 641 RSIRAAFVPGEGYESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVP 700

Query: 421 IDKVSKEQRAIGKVMELALGY 441
            +KV+ + R+  K M   L Y
Sbjct: 701 EEKVTADDRSHIKAMSYGLAY 721


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 28/140 (20%)

Query: 303 GRLRGTL-QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           GRL  +  QF  A  TGR S      QN+P                     I  PLG   
Sbjct: 666 GRLHTSFNQFITA--TGRLSSSNPNLQNIP---------------------IRSPLG--K 700

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           +  R+ I +S  K L+ AD + IE R+ A I+G+   I+AF N EDI+  T    F +  
Sbjct: 701 EIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRNREDIHTATARVIFGS-- 758

Query: 422 DKVSKEQRAIGKVMELALGY 441
           D+++ + R   K +   + Y
Sbjct: 759 DEITPDMRRKAKEVNFGVLY 778


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G  L+++ D + +E RV+A IA ++  + +F +G+D++  T ++ F  P+D
Sbjct: 632 MREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLD 691

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +V+   R+  K +   + Y  G   F  +A   G+   + +Q ++S
Sbjct: 692 QVTPYMRSKAKTVNFGIIY--GISDF-GLARQLGVPRGEAAQYIES 734


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R LA ++ ++    AF + ED++  T ++ F+ P++KV+K+QR   K +   
Sbjct: 647 ADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVNFG 706

Query: 439 LGY----QGGAKVFKTMASHC 455
           + Y     G +K+ K   S  
Sbjct: 707 IIYGQQAYGLSKILKISVSEA 727


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S     L+ AD + IE R++A  + ++  I+AF  G+DI+  T +K F  P+
Sbjct: 694 AIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEAFKAGKDIHTATASKLFKVPL 753

Query: 422 DKVSKEQRAIGKVMELALGY 441
           ++V +  R   K     + Y
Sbjct: 754 EQVDESMRRQAKTANFGIIY 773


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +AS  G K+V AD + IE RVLA I+G++   +AF  G DI+  T    F+   +
Sbjct: 637 IRKAFVASKEGWKIVAADYSQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDVFHVKRE 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTDLMRRSAKAVNFGIVY 715


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 27/140 (19%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361
           GRL  T     A  TGR S      QN+P R E   EI                      
Sbjct: 584 GRLHTTFA-QTAVATGRLSSLNPNLQNIPIRSETGREI---------------------- 620

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+      
Sbjct: 621 ---RKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIHRRTAAQVLGVME 677

Query: 422 DKVSKEQRAIGKVMELALGY 441
           D V+  QR   K +   + Y
Sbjct: 678 DLVTPNQRRAAKTVNFGVLY 697


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253
           +G++ID     +L++    E K L+  I++L   D  + S +Q +  L   L L      
Sbjct: 508 QGFKIDAPYFKRLEQEFKDELKVLERQILELIGVDFNLNSPKQLSEVLYEKLELPKNKSH 567

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 568 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 621

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 622 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 656

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F     +++KE+R+I
Sbjct: 657 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GELAKEKRSI 713

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 714 AKSINFGLVYGMGSK 728


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I      LV AD + IE R+LA ++ E   + A+ N +D++  T    F+   ++
Sbjct: 717 IRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EE 774

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           ++ ++R +GK +   + Y  G++ F   A    ++ ++F
Sbjct: 775 ITPQERTLGKTINFGVIYGMGSQRFAREAGVSAVEGKEF 813


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + 
Sbjct: 92  KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 147

Query: 425 SKEQRAIGKVMELALGYQGGAKV 447
           + E R++ K +   L Y  G K 
Sbjct: 148 NYETRSVAKSINFGLIYGMGYKT 170


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 31/158 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     L E V+ D     T      ++TGR S      QN+P  +R EE       
Sbjct: 616 KLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP--DRDEE------- 666

Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S+ G ++  +D + IE RVLA + G++   KAF +
Sbjct: 667 ---------------GKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFES 711

Query: 405 GEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGY 441
           GEDI+  T    F    D K++ +QR   K +   + Y
Sbjct: 712 GEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++    AF NG DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   D+V    R   K +   + Y
Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I      LV AD + IE R+LA ++ E   + A+ N +D++  T    F+   ++
Sbjct: 717 IRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EE 774

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           ++ ++R +GK +   + Y  G++ F   A    ++ ++F
Sbjct: 775 ITPQERTLGKTINFGVIYGMGSQRFAREAGVSAVEGKEF 813


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I         AD + IE R++A ++ ++  I+AF +G DI+  T AK ++ P++ 
Sbjct: 706 IRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMIEAFRSGYDIHRATAAKIWHIPMED 765

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 766 VTDTQRKKAKQANFGIIY 783


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I   G     AD + IE R++A ++ +   ++AF  G DI+  T AK ++  I +
Sbjct: 684 IRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVEAFREGSDIHAATAAKIWHEDIKE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           V+  QR   K     + Y  G   F       GL  +   +N ++    ED+
Sbjct: 744 VTDAQRKKAKTANFGIIY--GITTF-------GLAQRMNIENREAKQIIEDY 786


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           L+ +D + IE RVLA I+G++  I AF NGEDI+  T  + FN   P D    ++R
Sbjct: 658 LLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRR 713


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 31/158 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     L E V+ D     T      ++TGR S      QN+P  +R EE       
Sbjct: 616 KLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP--DRDEE------- 666

Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S+ G ++  +D + IE RVLA + G++   KAF +
Sbjct: 667 ---------------GKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFES 711

Query: 405 GEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGY 441
           GEDI+  T    F    D K++ +QR   K +   + Y
Sbjct: 712 GEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 619 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 664

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++    AF NG DI+  T  
Sbjct: 665 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 714

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   D+V    R   K +   + Y
Sbjct: 715 KVFNVESDQVDSLMRRQAKAVNFGIVY 741


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R       G   + AD + IE  +LA ++ ++  I+AF N +DI++ T ++ F    +K
Sbjct: 679 IREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKKDIHIKTASQLFKVDEEK 738

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+   R I K +   + Y+  A
Sbjct: 739 VTSSMRRIAKSINFGIIYRMSA 760


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++    AF NG DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   D+V    R   K +   + Y
Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 31/158 (19%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KLN+     L E V+ D     T      ++TGR S      QN+P  +R EE       
Sbjct: 608 KLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP--DRDEE------- 658

Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S+ G ++  +D + IE RVLA + G++   KAF +
Sbjct: 659 ---------------GKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFES 703

Query: 405 GEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGY 441
           GEDI+  T    F    D K++ +QR   K +   + Y
Sbjct: 704 GEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 741


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++    AF NG DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   D+V    R   K +   + Y
Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA IA ++  + AFA  +DI+  T ++ F   +D+V+ E R   K +   
Sbjct: 662 ADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRTASEVFGVAMDEVTPEMRGRAKAVNFG 721

Query: 439 LGYQ----GGAKVFKTMASHCG 456
           + Y     G AK  K      G
Sbjct: 722 IVYGISDFGLAKDIKVTRKEAG 743


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 123/308 (39%), Gaps = 64/308 (20%)

Query: 161 EYCKRDVEATRELFKRLIP-LSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           EY   D E T  L++ L P L+           ER +  +   +   G RID + + ++ 
Sbjct: 507 EYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMS 566

Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
              AQ+   L+ +I +L  G   + S +Q   L   LF   G     ++ G      + S
Sbjct: 567 NAFAQKMAGLEAEIHELAGGPFNVGSPKQ---LGEILFERMG-----LAGGKQGKTGAFS 618

Query: 269 NITQLAKDLI---------------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
              ++ +DL                +++L S+ +  L L+   E     GR+  +    G
Sbjct: 619 TGAEVLEDLAAEGHELPARVLDWRAISKLKSTYTDALPLHVNPET----GRVHTSYSIAG 674

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A +TGR +      QN+P   R++E                         +R   +A+ G
Sbjct: 675 A-QTGRLASTDPNLQNIP--VRTDE----------------------GRRIREAFVAAPG 709

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            +LV  D + IE R+LA +A      +AF +G DI+  T ++ F  P++ +    R   K
Sbjct: 710 MRLVSLDYSQIELRILAHVAQIPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAK 769

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 770 AINFGVIY 777


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%)

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G  ++ AD + IE RVLA I  ++  IKAF  G DI+  T  K F    D+V    R
Sbjct: 643 AEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMR 702

Query: 430 AIGKVMELALGY 441
              K +   + Y
Sbjct: 703 RQAKAVNFGIVY 714


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 13/101 (12%)

Query: 360 ASD-CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           ASD  VR C +A  G+ +   D    E RVLA ++G+   I+AF  G D++  T      
Sbjct: 370 ASDWIVRRCFVADPGQVMASVDYQTQELRVLAALSGDQTMIEAFKTGADLHQMTA----- 424

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                 S+  R +GK+      Y GGA   KT+A    +D 
Sbjct: 425 ----DASQVVRKVGKMANFLTVYGGGA---KTLAEQAHIDF 458


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 24/156 (15%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R LA ++ ++    AF + ED++  T ++ F+ P+++V+K+QR   K +   
Sbjct: 647 ADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFG 706

Query: 439 LGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-HHLWMQ------- 486
           + Y     G +K+ K   S     +  +     + + F D   +++  +L ++       
Sbjct: 707 IIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFIDETISQACENLRVKTLLGRER 766

Query: 487 --DQYPEF----------AVKDKLIGTACELVKKAW 510
             D + EF          AV  ++ G+A EL+K A 
Sbjct: 767 IIDNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++    AF NG DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   D+V    R   K +   + Y
Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S    L+  AD + IE RVLA IAG++  I AF  G DI+  T    F+   D
Sbjct: 635 IRQAFIPSEKNWLMFAADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDAD 694

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+   R   K +   + Y
Sbjct: 695 SVTSNMRRHAKAVNFGIVY 713


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 33/204 (16%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           LN +S   + DGR+ G+    G + T R S      Q LP +                  
Sbjct: 343 LNFIS---NKDGRVHGSFNATG-TETTRLSSNNPNMQQLPAK------------------ 380

Query: 352 TIADP--LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
             +DP          R    A     L+  D + +E R+LA  AG++   +AF +G D++
Sbjct: 381 -TSDPKRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLH 439

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF---KTMASHCGLDL-QQFSQN 465
             T +  +  P+DKV  E R   K +   + Y      F     M+     D+ Q++  N
Sbjct: 440 KETASIVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSFAPKHDMSVEEAEDIFQRYFAN 499

Query: 466 VKSTSTFEDWEQAESHHLWMQDQY 489
             +  TF D    E+H   ++D +
Sbjct: 500 KPNIKTFID----ETHREALRDGF 519


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G  L  AD + IE R+LA ++ E   ++ F +GED++  T          +
Sbjct: 696 IRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEGFRSGEDVHTLTARLLLEK--QE 753

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           ++ E+R + K +   + Y  GA+ F   A     + +QF Q
Sbjct: 754 ITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQ 794


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++    AF NG DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   D+V    R   K +   + Y
Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)

Query: 364 VRSCIIASNGKK----------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
           VR   +A + +K          L+ AD + IE RVLA +  E    +AF+   DI+  T 
Sbjct: 668 VRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTA 727

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ F  PI+ V    R +GK +   + Y  G   F+ +A   GL+ ++ +  VK
Sbjct: 728 SRLFGVPIESVDDNMRRMGKTINFGIIY--GMSGFR-LARDTGLEQREANLFVK 778


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA+ G + + AD + I+ RVLA  + +   ++AF   +DI+  T A+ F      
Sbjct: 675 IRGAFIAAPGHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAM 734

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ + R + K +   + Y
Sbjct: 735 VTADMRRVAKTINFGIIY 752


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L E +S   GR+        A+ TGR S      QN+P   R+EE             
Sbjct: 686 DALQEKISPVTGRVHTAFAL-AATNTGRLSSTDPNLQNIPV--RTEE------------- 729

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +AS G KL+  D + IE R++A +A       AF +G DI+  
Sbjct: 730 ---------GRKIRRAFVASPGHKLLSVDYSQIELRLVAEMADIQALKDAFRDGLDIHAA 780

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T A+ F  P+ +++ + R   K +   + Y
Sbjct: 781 TAAQVFGIPLAQMTPDIRRKAKAINFGIIY 810


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 30/177 (16%)

Query: 270 ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA D  ++ + L   G A LK    + L+  +  DGR+  +      + TGR S   
Sbjct: 427 LEKLAPDYPIVADILEYRGLAKLKSTYADGLAAYIEEDGRIHTSFN-QTITATGRISSTE 485

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P   R+E         L R              +R   +         AD + I
Sbjct: 486 PNLQNIPM--RTE---------LGR-------------LIRKVFVPKEDHVFADADYSQI 521

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           E R+LA ++ +   I A+  G+DI+  T +K F+ P ++V+  QR   K +   + Y
Sbjct: 522 ELRILAHMSEDQELIAAYHEGKDIHGITASKVFHVPFEEVTPLQRRNAKAVNFGIVY 578


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 72/181 (39%), Gaps = 40/181 (22%)

Query: 279 LNRLASS---GSAILKLNTLSE------------AVSSDGRLRGTLQFYGASRTGRWSGC 323
           L RLA+    G  IL+  +LS+              S  GR+  +      + TGR S  
Sbjct: 577 LERLAAEHEIGRLILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYN-QAVTNTGRLSSS 635

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   RSEE           G +I           R   IA  G  ++ AD + 
Sbjct: 636 EPNLQNIPI--RSEE-----------GRSI-----------RHAFIAEEGCLILSADYSQ 671

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++ +     AFA  EDI+  T A+ F      V+ E R   K +   + Y  
Sbjct: 672 IELRVLAHLSQDRVFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQ 731

Query: 444 G 444
           G
Sbjct: 732 G 732


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I SN + L++ AD + IE RV A I+G++  ++AF N EDI+  T    FNT   
Sbjct: 704 IRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEAFRNREDIHSATARTIFNT--T 761

Query: 423 KVSKEQRAIGKVMELALGY 441
           +++ E R   K +   + Y
Sbjct: 762 EITPEMRRKAKEVNFGVLY 780


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 44/230 (19%)

Query: 215 QERKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           Q +K L ED+ +K T      S  T A  +    +  +D  + + G L ++L H  I +L
Sbjct: 604 QLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERANGFLGALLRHREINKL 662

Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            +                + TL +A  +SD R+  T +   A+ TGR S      QN+P 
Sbjct: 663 KQ---------------IVQTLIDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIP- 705

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391
                          NR          A   +R   +   G + L+  D + +E R++A 
Sbjct: 706 ---------------NRNA--------AGREIRGVFVPGEGYEALMSCDYSQVELRIMAD 742

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y
Sbjct: 743 LSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAY 792


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA I+G++  ++AF   ED++  T  + F+   D
Sbjct: 636 IRQAFVPSKEGWVIFAADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKD 695

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ E R   K +   + Y
Sbjct: 696 DVTSEMRRHAKAVNFGIVY 714


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 668 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHAETASKLFKIEEKE 727

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 728 ITPNLRRIAKSINFGIIYR 746


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 25/126 (19%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R E   EI                         ++ I +S+   
Sbjct: 609 TGRLSSTNPNLQNIPIRTEEGREIR------------------------KAFIPSSDNMI 644

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE RV A ++G+    +AF +G DI+  T ++ F    ++VS   R   KV+
Sbjct: 645 LLAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVI 704

Query: 436 ELALGY 441
              L Y
Sbjct: 705 NFGLAY 710


>gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus]
          Length = 858

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--ANGEDIYVTTYAKAFNTPID 422
           R+  ++S G   + AD + IE R+LA ++G+   +K F  +  ED++ T  ++  N P++
Sbjct: 596 RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELLKLFHESEREDVFSTLTSQWKNMPVE 655

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V+   R   K +  ++ Y  G    A             L+ F Q  K  S F     A
Sbjct: 656 HVTHVDREQTKKVVYSVVYGAGKERLAACLGVAVPEAARFLETFLQKYKKISDFAQAAIA 715

Query: 479 ESH 481
           + H
Sbjct: 716 QCH 718


>gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
 gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
          Length = 383

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253
           +G++ID+    +L++    E K L+  I+ L   D  + S +Q    L   L L      
Sbjct: 6   QGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKSH 65

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 66  STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 119

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 120 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 154

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I
Sbjct: 155 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSI 211

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 212 AKSINFGLVYGMGSK 226


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R+LA ++G+     AFA  +DI+  T ++ F  P++ V+ E R   K +
Sbjct: 709 LLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRTASEVFGVPMENVTSEMRRRAKAV 768

Query: 436 ELALGY 441
              + Y
Sbjct: 769 NFGIVY 774


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL +    +GR+  +    G + TGR S      QN+P +              N G  
Sbjct: 659 DTLPKMTDKNGRIHTSFIQTGTA-TGRLSSRDPNLQNIPIRG-------------NEGRK 704

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I           R    A  G+ L+ AD + IE  +LA ++ +   ++AF  G D++  T
Sbjct: 705 I-----------REAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNKGIDVHAKT 753

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +  F   I  VS++ R I K +   + Y  G   F+  +S
Sbjct: 754 ASLIFAVDIKDVSQDMRRIAKTINFGVMY--GMSAFRLASS 792


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 132/311 (42%), Gaps = 58/311 (18%)

Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209
           YC  DV  TR+L+           ++LI L +  E+ L  +   +  RG RID+  + +L
Sbjct: 536 YCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKEL 595

Query: 210 QELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
              + +  K +++   K+  TD  + S +Q   L   LF   G+D    S  T     + 
Sbjct: 596 SIELNKALKNIEKSAYKIAKTDFNLSSPKQ---LGEVLFEQLGLD-KKKSRRTKTGWSTD 651

Query: 268 SNITQ-LAKDLILNRLASSGSAILKL-NTLSEAV-----SSDGRLRGTLQFYGASRTGRW 320
           +N+ + L  D  +  L      + KL +T  EA+     +  GR+         + TGR 
Sbjct: 652 ANVLERLQGDNPIVPLVIEHRTLSKLLSTYVEALPQLVEAQTGRVHTDFN-QAVTATGRL 710

Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           S      QN+P R E S  I                         R   +   G +L+ A
Sbjct: 711 SSSNPNLQNIPIRTEFSRRI-------------------------RKAFLPREGWQLLSA 745

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMEL 437
           D + IE R+LA ++GE    +A+ NG+D++  T AK     +DK  ++  +R +GK +  
Sbjct: 746 DYSQIELRILAHLSGEASLQEAYRNGDDVHALT-AKIL---LDKESITSNERRLGKTINF 801

Query: 438 ALGYQGGAKVF 448
            + Y  G + F
Sbjct: 802 GVIYGMGVQRF 812


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|162149305|ref|YP_001603766.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G  L+ AD + IE R+LA +A      +AFA G+DI+  T ++ F  PI+ 
Sbjct: 704 IRRAFVAAPGHVLLSADYSQIELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEG 763

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 764 MDPLTRRRAKAINFGIIY 781


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G  LV AD + IE R+LA +A      +AFA G+DI+  T ++ F  P++ 
Sbjct: 685 IRRAFVAAPGHLLVSADYSQIELRLLADVANIPALREAFALGQDIHARTASEVFGIPLEG 744

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 745 MDPLTRRRAKAINFGIIY 762


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +RS  I      KL+ AD + IE RVLA  +G+   ++++   EDI+    ++ +  P+D
Sbjct: 632 IRSAFIPGTPDWKLLCADYSQIELRVLAHFSGDPALMESYQKNEDIHARVASEVYGVPLD 691

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 692 QVTSTHRRSAKAINFGVVY 710


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 58/234 (24%)

Query: 184 ERDLWLLDQTI--------NDRGYRIDLDLVLKLQELIAQER------KKLDEDIVKLTD 229
           ER+ WLLDQ +         +R   I+ DL   L   I +ER      K+L + +     
Sbjct: 1   ERNGWLLDQRLCHILCAKFKERMNEIESDL-QALFPPIVEERYSEKTGKRLKDKVTVFNV 59

Query: 230 GIIRSSRQTYALRMYL-------FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           G    SRQ  A R+            TG  +VD  E TLK         Q+ + L+L + 
Sbjct: 60  G----SRQQVAERLSAKGAVWTELTPTGKPMVD--EKTLKENSHVPEAAQVLEYLLLQKR 113

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +      ++N+  E V  DGR+ G +   GA  TGR                       
Sbjct: 114 YA------QVNSWLEHVQDDGRVHGRVTTNGAV-TGR----------------------M 144

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           T Q  N  +  +       DC R+C I   G+KLV  D +G+E R+LA   G++
Sbjct: 145 THQNPNMAQVPSVNSEYGEDC-RNCWIVPEGRKLVGVDASGLELRMLAHYMGDE 197


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +A     L+ AD + IE R+LA IA      +AF+ G+DI+  T ++ F   I+ 
Sbjct: 725 IRTAFVAPKRHVLLSADYSQIELRILAHIANITALKEAFSRGQDIHAITASQIFGVAIEG 784

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +  + R   K +   + Y  G   F  +A+  GL  Q+  + ++
Sbjct: 785 MPSDIRRRAKAINFGIIY--GISAF-GLANQLGLSRQEAGRYIQ 825


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 108/278 (38%), Gaps = 45/278 (16%)

Query: 192 QTINDRGYRIDLDLVLKL-QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
           Q +   G+ IDLD   +  +EL +   +  DE I +L D  I S  Q   L+  L  +TG
Sbjct: 319 QQMETTGFDIDLDYAEEYGRELKSGLDRLYDELIEELGDVNINSPAQ---LKPALERVTG 375

Query: 251 IDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGT 308
             L    ++  LK +     + +     +L    S       +N L E +    G+L   
Sbjct: 376 ESLASTDAKKVLKPLAKKYPVVKK----LLEYKDSFKLYSTYINALPELIDQKTGKLYTN 431

Query: 309 LQFYGASRTGRWS--GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
               GA +TGR+S  G     QN P++                               R 
Sbjct: 432 FNPNGA-KTGRFSSGGTGVNLQNQPKK------------------------------ARK 460

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +A  G  ++  D +  E R LA+   +   +  +  G+D+Y +  A+ F  PI++   
Sbjct: 461 LFVAPEGYAILGGDWSQQEYRCLAYFTQDPKLVDNYFRGDDLYASIAAEVFGKPIEECGD 520

Query: 427 EQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
               R   KV+ LA+ Y GGA + K        + Q+F
Sbjct: 521 GSVYRKQAKVIMLAVAYGGGANMLKDAIGVEKHEAQKF 558


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +      L+ AD + IE R+L  + GE+  ++A+ +G+D++  T     +    +
Sbjct: 731 IRKAFLPQKDWTLLSADYSQIELRILTHLCGEEALVEAYNSGDDVHALTARLLLDK--SE 788

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF----SQNVKSTSTFEDWEQ 477
           VS E+R +GK +   + Y  GA+ F         + ++F     Q       F +W++
Sbjct: 789 VSDEERRLGKTINFGVIYGMGAQRFARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQE 846


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 120/321 (37%), Gaps = 55/321 (17%)

Query: 162 YCKRDVEATRELFKRL-IPLSDGERDLWLLDQTINDR-----------GYRIDLDLVLKL 209
           YC  DV AT +L  +L   L D    L  L  T+              G RID D + +L
Sbjct: 532 YCGLDVYATFQLVPKLRADLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQL 591

Query: 210 QELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDL-----VDMSEGTLK 262
            + + Q+   L+E    L        S +Q   L   LF    +D+       +   T  
Sbjct: 592 SQQLEQDLHALEERAYGLAGETFNLGSPKQ---LSELLFNKLKLDVKKSRKTKLGYSTDA 648

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321
           + L          DLIL     +      ++ L   V SD GR+         + TGR S
Sbjct: 649 ATLEKMQGDHPVIDLILEHRTLAKLKSTYVDALPNLVRSDTGRVHTDFN-QAITATGRLS 707

Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
                 QN+P R E S +I                         R   I   G  LV AD
Sbjct: 708 SSNPNLQNIPIRTEFSRQI-------------------------RKAFIPEPGWMLVTAD 742

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA ++ E   ++A+   +D++  T         + ++ E+R + K++   + 
Sbjct: 743 YSQIELRILAHLSQEPRLVEAYQQHQDVHKLTAQLLLEK--EDINPEERRLAKIINFGVI 800

Query: 441 YQGGAKVFKTMASHCGLDLQQ 461
           Y  GA+ F   A   G+  +Q
Sbjct: 801 YGMGAQRF---ARESGVSFKQ 818


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+PR++                             +R    A  G   
Sbjct: 561 TGRLSSSNPNLQNIPREKE----------------------------IRKIFTAKEGHHF 592

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R+LA+IA  +    A A+G D++  T ++ F T  DK++ + R   K + 
Sbjct: 593 LCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DKITPDLRNKAKAVN 650

Query: 437 LALGY 441
             + Y
Sbjct: 651 FGIVY 655


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 842

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 30/165 (18%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  +      + TGR S      QN+P   RSEE                       
Sbjct: 573 DGRIHTSFS-TTVTATGRLSSSNPNLQNIPI--RSEE----------------------G 607

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           + +R   IA  G K++ AD + IE ++LA +A      +AFAN +DI+  T  + F   +
Sbjct: 608 NFIRQAFIAPKGCKIISADYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFG--V 665

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            ++ ++ R   K +   + Y  G   F  +A   G+  Q+ ++ +
Sbjct: 666 QEIDEQLRRKAKTINFGIIY--GISPF-GLAKRLGITFQEAAEYI 707


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +  AD + IE RVLA IAG++  IKAF    DI+  T    F+   D+V+   R   K +
Sbjct: 653 MFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAV 712

Query: 436 ELALGY 441
              + Y
Sbjct: 713 NFGIVY 718


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R ER  E                         VR   IA + + 
Sbjct: 665 TGRLSSNNPNLQNIPIRTERGRE-------------------------VRKAFIARDDEH 699

Query: 376 LVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           +++ AD + IE R++A I+ +   + AFA G DI+  T AK +   +++V+  QR   K 
Sbjct: 700 VILSADYSQIELRLIAEISKDANMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKA 759

Query: 435 MELALGY 441
           +   + Y
Sbjct: 760 VNFGIIY 766


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL +    +GR+  +    G + TGR S      QN+P +              N G  
Sbjct: 651 DTLPKMTDKNGRIHTSFIQTGTA-TGRLSSRDPNLQNIPIRG-------------NEGRK 696

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           I           R    A  G+ L+ AD + IE  +LA ++ +   ++AF  G D++  T
Sbjct: 697 I-----------REAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNTGIDVHAKT 745

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +  F   I  VS++ R I K +   + Y  G   F+  +S
Sbjct: 746 ASLIFAVDIKDVSQDMRRIAKTINFGVMY--GMSAFRLASS 784


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 101/457 (22%), Positives = 178/457 (38%), Gaps = 81/457 (17%)

Query: 61  LRDETVMCVAHNSLFE-RILFKKTLGI-DIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           L D  +  + HNS ++  +L +  L +  I     I  +VL   N    +LKN  LA  +
Sbjct: 196 LTDVNIGKILHNSKYDIHMLIRHGLRLRGIKHDTMIAMAVL-NENEPTLALKN--LATKY 252

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK--- 175
            ++    ++       F K S    P D               Y  +D   T EL+K   
Sbjct: 253 GKYFGFEDKSYTYEELFGKTSFAEIPLDAALV-----------YAAKDTHLTYELYKWQR 301

Query: 176 ---------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                    RLI   + E  L  +   +   G+ ID+D  ++ +  +  E   L+ ++ +
Sbjct: 302 QHLNQKESLRLI-YDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANLTE 360

Query: 227 LTDGIIRSSRQTYALRMY----LFLITGIDLVDMSEGTLKSI---LSHSNITQLAKDLIL 279
               I  +S    A  +Y    L +I G +       TLK +     H  I  L K   L
Sbjct: 361 HFGDINFNSPLQLAAVLYDKLKLPVIKGKER-STDVKTLKKLRDETKHEGIDVLLKYREL 419

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            +L  +      +  L + +  DG L G+     A+ TGR++      QNLP +      
Sbjct: 420 TKLLGT-----YVEALPQLIKKDGLLHGSFN-QVATVTGRFASREPNLQNLPPR------ 467

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                    R  I+A     ++  D + IE RVLA ++G+    
Sbjct: 468 ------------------------ARRLIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQ 503

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGL 457
           + +  G+D+Y T  ++ F    ++   +   R + KV  LA+ Y  G  ++ T+A   G+
Sbjct: 504 EPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMY--GTSMW-TLADQLGI 560

Query: 458 DLQQFSQNVKS-TSTFEDWEQ--AESHHLWMQDQYPE 491
            +++ +Q ++   +T+ D       +H    Q++Y E
Sbjct: 561 TVEEANQFIEDFFATYPDVYAFICATHEFAKQNEYVE 597


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   ++S    L++ AD + IE RVLA ++ ++  I++F N EDI++ T ++ F    +
Sbjct: 627 IRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFKVSKE 686

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E R   K +   + Y
Sbjct: 687 EVTSEMRRRAKAVNFGIVY 705


>gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8]
 gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8]
          Length = 893

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253
           +G++ID+    +L++    E K L+  I+ L   D  + S +Q    L   L L      
Sbjct: 516 QGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKSH 575

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI+  T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VSKEQRAIGKVMELALGYQ 442
           ++   R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE RVLA ++ +   + AF  G+D++V T  + F      
Sbjct: 664 IRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFGVDQAG 723

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           V+ E R   K +   + Y  G
Sbjct: 724 VTAEMRRRSKTINFGVIYGMG 744


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IAS G  L+ AD + IE R+LA  A      +AF  G+DI+  T ++ F   ++ 
Sbjct: 725 IRAAFIASEGHILLSADYSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEG 784

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK----STSTFEDWEQAE 479
           +  + R   K +   + Y  G   F  +A+  G+  ++    ++         ED+ +  
Sbjct: 785 MPSDIRQRAKAINFGIIY--GISSF-GLANQLGISRKEAGNYIRLYFERFPGIEDYMEKT 841

Query: 480 S----HHLWMQD------QYPEF--------------AVKDKLIGTACELVKKA 509
                HH +++        YPE               A+   + G+A +++++A
Sbjct: 842 KMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAINAPIQGSAADIIRRA 895


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +V AD + IE RVLA ++ +   + AF  G+D++V T  + F      
Sbjct: 404 IRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFGVDQAG 463

Query: 424 VSKEQRAIGKVMELALGYQGG 444
           V+ E R   K +   + Y  G
Sbjct: 464 VTAEMRRRSKTINFGVIYGMG 484


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           ++ +    G  L+ AD + IE RV+A ++ +   ++AF  G DI+  T AK +   +D+V
Sbjct: 732 KAFVPEKEGWVLMSADYSQIELRVMAELSADPAMMEAFQEGHDIHQATAAKVYGVALDEV 791

Query: 425 SKEQRAIGKVMELALGY 441
             E R   K++   + Y
Sbjct: 792 LPEMRRTAKMVNFGIIY 808


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           + +R   IA  G K++ AD + IE R+LA +A      +AFANG+DI+  T  + F   +
Sbjct: 102 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFG--V 159

Query: 422 DKVSKEQRAIGKVMELALGY 441
            ++ ++ R   K +   + Y
Sbjct: 160 QEIDEQLRRKAKSINFGIIY 179


>gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121]
          Length = 466

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 182 LQKVISDDHRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 227

Query: 355 DPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                 +SD V           ++ AD + IE RVLA I  ++   +AF NG DI+  T 
Sbjct: 228 KAFKPTSSDSV-----------ILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATA 276

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
            K F+   D+V    R   K +   + Y
Sbjct: 277 MKVFDVEADEVDSLMRRQAKAVNFGIVY 304


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 32/157 (20%)

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344
           KLN+     L+  +  DGR+ G+      + TGR S      QN+P R E   +I     
Sbjct: 588 KLNSTYATGLAGYIRDDGRIHGSFN-QTITATGRISSTDPNLQNIPVRTEMGSKI----- 641

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               R   +   G   V AD + IE RVLA ++G++  I+++  
Sbjct: 642 --------------------RDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIESYHT 681

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             DI+  T A+ F+ P+DKV+ E R   K +   + Y
Sbjct: 682 AADIHAATAAQVFHVPLDKVTPELRRNAKAVNFGVVY 718


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 16/155 (10%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GKKL+  D + IE R+LA  + +   + AF  G DI++ T    F     +
Sbjct: 674 IREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHDIHMQTAIALFGA---E 730

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            +  +R I K +   L Y  G    K ++   G+  ++  + ++    FE +   + +  
Sbjct: 731 DASRKRNIAKTVNFGLLYGMGQ---KKLSDTLGITTKEAKEIIE--RYFETFPSVKGYFN 785

Query: 484 WMQDQYPEFAVKDKLI--------GTACELVKKAW 510
            + +Q  E    + L+        G+A  ++K A+
Sbjct: 786 GIVEQAKEIGYVETLLHRRRYFDFGSATPMLKAAY 820


>gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 857

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +RS  +   G   LV  D + IE R+LA ++ +   I  F + +DI+  T ++ F  P D
Sbjct: 617 IRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVFGVPFD 676

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E R+  K +   + Y
Sbjct: 677 EVTGELRSHAKAVNFGIIY 695


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L   V+ D GR+  +    GA+ TGR +      QN+P   RS+E             
Sbjct: 663 DALQTHVNPDTGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSDE------------- 706

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   +A+ G ++V  D + IE R+LA +A       AFA G DI+  
Sbjct: 707 ---------GRRIREAFVATPGHRIVSLDYSQIELRILAHVANLPEMKAAFARGIDIHAM 757

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           T ++ F  P++ +    R   K +   + Y
Sbjct: 758 TASEMFGVPVEGMDPMVRRRAKAINFGVIY 787


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R C  A     LV AD +  E R+ A +A E   + A+A+G D++  T A+  N   D V
Sbjct: 139 RRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHALTAARVLNKDEDAV 198

Query: 425 SKEQRAIGK 433
           +K+ R + K
Sbjct: 199 TKDDRQLAK 207


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+        
Sbjct: 719 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 778

Query: 424 VSKEQRAIGKVMELALGY 441
           V   QR   K +   + Y
Sbjct: 779 VDANQRRAAKTVNFGVLY 796


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383
           PR  R      QT+ A  R  + +DP    + +  D    +R C I   G     AD + 
Sbjct: 642 PRTGRIHTSFNQTVTATGRLSS-SDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE R++A ++ ++  I+AF  G DI+  T A+ ++  I +V+  +R   K     + Y
Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  +V AD + IE R+LA ++ E   ++A+   ED++  T    F    +K
Sbjct: 724 IRKAFLPEAGWLMVAADYSQIELRILAHLSQEPILVQAYQQNEDVHTVTGRLVFEK--EK 781

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ E+R I K +   + Y  G+  F
Sbjct: 782 ITSEERGIAKTINFGVIYGMGSLRF 806


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383
           PR  R      QT+ A  R  + +DP    + +  D    +R C I   G     AD + 
Sbjct: 642 PRTGRIHTSFNQTVTATGRLSS-SDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE R++A ++ ++  I+AF  G DI+  T A+ ++  I +V+  +R   K     + Y
Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PID 422
           +R      NG   + AD + IE  +LA ++ ++  IKAF N +DI++ T +K F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKAFENNKDIHIETASKLFKIEEKE 728

Query: 423 KVSKEQRAIGKVMELALGYQ 442
           K++   R I K +   + Y+
Sbjct: 729 KITPNLRRIAKSINFGIIYR 748


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 360 ASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           A   +R   I SN   L++ AD + IE R+ A I+G++  I+AF N EDI+  T    F+
Sbjct: 697 AGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLIEAFRNREDIHRATAKVIFS 756

Query: 419 TPIDKVSKEQRAIGKVMELALGY 441
           T  D+++ + R   K +   + Y
Sbjct: 757 T--DEITSDMRRKAKEVNFGVLY 777


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L + ++SDGR+  T     A+ TGR S      QN+P   R+++             
Sbjct: 752 VRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIP--ARTDD------------- 795

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   IA      L+ AD + IE R++A ++G++  I AF +GED++ 
Sbjct: 796 ---------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHR 846

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  A  F    + V+  QR   K     L Y
Sbjct: 847 SVAALVFGVAPEAVTATQRTHVKATSYGLAY 877


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L + ++SDGR+  T     A+ TGR S      QN+P   R+++             
Sbjct: 752 VRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIP--ARTDD------------- 795

Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   IA      L+ AD + IE R++A ++G++  I AF +GED++ 
Sbjct: 796 ---------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHR 846

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  A  F    + V+  QR   K     L Y
Sbjct: 847 SVAALVFGVAPEAVTATQRTHVKATSYGLAY 877


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A I+G+    +AF  G+DI+  T AK F      V+KE R   K +
Sbjct: 715 LLSADYSQIELRIVASISGDKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSV 774

Query: 436 ELALGYQGGA 445
              + Y  GA
Sbjct: 775 NFGIIYGQGA 784


>gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191]
 gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191]
          Length = 862

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +A  GK L+  D + I+ R+LA  + +   + AF  G DI+  T A+ F    +
Sbjct: 620 MLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLVNAFKEGGDIHTKTAAEVFGVMRE 679

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
            VS E R+  K +   + Y  G
Sbjct: 680 MVSDEMRSSAKAINFGIIYGQG 701


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G+ L+  D + IE R+LA  + +   ++AF  G DI++ T  K F     +
Sbjct: 653 IRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHMETAIKLFGK---E 709

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
            +KE+R I K +   L Y  G++
Sbjct: 710 HAKEKRNIAKSINFGLIYGMGSR 732


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +RS  +   G   +++ D + IE R+LA ++ +   I  F   +DI+  T ++ F+ P +
Sbjct: 617 IRSLFVPGKGYDYILSGDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWE 676

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +V+ E+R+  K +   + Y  G   F  +A + G+   Q  Q ++S
Sbjct: 677 QVTPEERSHAKAVNFGIIY--GISDFG-LARNIGISRAQAKQYIES 719


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 19/189 (10%)

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +T LA+DL   RL  S      L       ++   +     F  A+     +G V    
Sbjct: 297 TLTALARDLDTGRLTVSDQVRRMLTARGRVAATSNTIANLRSFLAAADP---AGRVHPQI 353

Query: 329 NLPRQERSEEILT-QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           N  R +     +T   +Q L +G    DP       +R C  A  G  L+  D + +E R
Sbjct: 354 NTLRAKTGRMSITGPALQTLKKG----DPR------LRHCFQADPGHVLISCDFSQVEVR 403

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           V A ++ +       A+G DI+  T    F    D  +K+QR + K       Y GGA+ 
Sbjct: 404 VTAALSRDPALTDVLASGVDIHDATARLLFG---DGFTKDQRTLAKRATFGTIYGGGARA 460

Query: 448 F--KTMASH 454
               T A+H
Sbjct: 461 LMNATGATH 469


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+        
Sbjct: 684 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 743

Query: 424 VSKEQRAIGKVMELALGY 441
           V   QR   K +   + Y
Sbjct: 744 VDANQRRAAKTVNFGVLY 761


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA ++ ++  +KAF +  DI+  T AK F      VS++ R +GK++  A
Sbjct: 671 ADYSQIELRVLAHVSKDENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFA 730

Query: 439 LGY 441
           + Y
Sbjct: 731 IIY 733


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--N 418
           S  +R   I      LV AD + IE R+L  ++ E   ++A+  GED++  T    F  +
Sbjct: 714 SQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILLQAYQAGEDVHRVTAQMIFDRD 773

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +P   V+  +R IGK++   + Y  GA+ F
Sbjct: 774 SP-QAVTAAERRIGKIINFGVIYGMGAQRF 802


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I+S  G  +V AD + IE RVLA ++ +   I++F N EDI++ T ++ F    +
Sbjct: 627 IRKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPE 686

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ E R   K +   + Y
Sbjct: 687 EVTGEMRRRAKAVNFGIVY 705


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I ++   +++ AD + IE R++A  + ++  ++AF NG DI+  T +K +   I 
Sbjct: 705 IRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMMEAFNNGTDIHTATASKIYKIDIQ 764

Query: 423 KVSKEQRAIGKVMELALGYQGGA 445
           +V+ + R + K    A+ Y   A
Sbjct: 765 EVTADMRRMAKTANFAILYGSSA 787


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G   V AD + IE RVLA ++ E   ++AF NG DI+  T +  F+   + V+ E R +
Sbjct: 624 EGNVFVAADYSQIELRVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRV 683

Query: 432 GKVMELALGY 441
            K++   L Y
Sbjct: 684 AKMINFGLLY 693


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA I  +   I AF   +DI++ T  K F    + +++  R IGK++  A
Sbjct: 677 ADYSQIELRVLAHITEDPNLINAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFA 736

Query: 439 LGYQGGAKVFKTMASHCGLDLQ 460
           + Y  G   +  +A   GLD++
Sbjct: 737 IVY--GVSPY-GLAKRTGLDVK 755


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A+ G +L+ AD   IE   LA ++ +   + AF    DI+  T A  FN  ID 
Sbjct: 758 IRQAFQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 817

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V    R I K +   + Y  G   F+
Sbjct: 818 VQPAMRRIAKTINFGIVY--GMSAFR 841


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 331 PRQERSEEILTQTIQALNR---GETIADPLGLASD---CVRSCIIASNG-KKLVVADLAG 383
           PR +R      QT+ A  R    E     + + ++    +R+    S+G   L+ AD + 
Sbjct: 587 PRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSADYSQ 646

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE R+LA ++ +   ++AF +G+DI+  T ++ F  P++ V+ + R   K +   + Y
Sbjct: 647 IELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 704


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 331 PRQERSEEILTQTIQALNR---GETIADPLGLASD---CVRSCIIASNG-KKLVVADLAG 383
           PR +R      QT+ A  R    E     + + ++    +R+    S+G   L+ AD + 
Sbjct: 588 PRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSADYSQ 647

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           IE R+LA ++ +   ++AF +G+DI+  T ++ F  P++ V+ + R   K +   + Y
Sbjct: 648 IELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 705


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 44/190 (23%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGR 319
           +K+IL H  +++L    +              + L + V  D GR+        A+ TGR
Sbjct: 689 VKTILEHRTLSKLKSTYV--------------DALPQLVRPDTGRVHTDFN-QAATGTGR 733

Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            S      QN+P R E S +I                         R   +   G  +V 
Sbjct: 734 LSSSNPNLQNIPIRTEFSRQI-------------------------RKAFLPKEGWLMVS 768

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA +  E   ++A+   +D++  T    F    + V+ ++R +GK +   
Sbjct: 769 ADYSQIELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLFEK--ETVTPDERRLGKTINFG 826

Query: 439 LGYQGGAKVF 448
           + Y  GA+ F
Sbjct: 827 VIYGMGAQRF 836


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 27/148 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353
           L + + +DG++  T+    A++TGR S      QN+  R E   EI              
Sbjct: 579 LKKYIQADGKIH-TVYNQAATQTGRLSSSEPNLQNISVRDEEGREI-------------- 623

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      R   +   G  LV +D   +E R+LA +A     IKAF N  DI+  T 
Sbjct: 624 -----------RKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTA 672

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
              F+  +++V+  QR   K +   + Y
Sbjct: 673 MDLFDCSLEEVTPLQRRQAKTVNFGIVY 700


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 25/139 (17%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+       G S TGR S      QN+P   RSEE                        
Sbjct: 607 GRIHSRFNQTGTS-TGRISSTEPNLQNIPI--RSEE----------------------GR 641

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +AS    LV  D + IE RVLA ++ +   ++AF +G DI+  T ++ F+   +
Sbjct: 642 LIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFHVDKE 701

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+   R+  K +   + Y
Sbjct: 702 DVTDLLRSRAKAVNFGIVY 720


>gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score = 43.9 bits (102), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   I +     ++AD   IE ++ A I  ++  +KA+ N  D++  T +      I++
Sbjct: 1579 IREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINE 1638

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++KE R + K +   L Y       +T A+
Sbjct: 1639 INKEDRHVAKAINFGLLYGMNYVNLRTYAN 1668


>gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score = 43.9 bits (102), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G +L+ AD + IE  +LA ++G+     AF+ G D++  T A  F    D 
Sbjct: 687 IRLAFTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSGGTDVHRATAALIFGVQPDA 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           V+ + R   K +   + Y  G   F+ +A   G+   Q ++ +++
Sbjct: 747 VTPDMRRTAKTINFGVMY--GMSAFR-LAGALGIPRTQAAEFIEA 788


>gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 32/151 (21%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           + L   ++ D GR+  +    GA +TGR S      QN+P R E   +I           
Sbjct: 641 DALQAQINKDSGRVHTSYSLSGA-QTGRLSSTDPNLQNIPIRTEVGRQI----------- 688

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A  G  ++ AD + IE R+ A +A      +AFANGEDI+ 
Sbjct: 689 --------------RHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHA 734

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T  + F     +V+++ R   K +  A+ Y
Sbjct: 735 ATAQQLFG----EVNRDTRGRAKTINFAILY 761


>gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
 gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11]
 gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635]
 gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus]
 gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20]
 gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131]
 gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1]
 gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 27/154 (17%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351
           + L + ++ DGR+  +      +RTGR S      QN+P R     E+            
Sbjct: 584 DGLLKVIAPDGRIHSSFNQV-ETRTGRISSTEPNLQNIPVRSAEGREL------------ 630

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        R   +A  G  LV AD + IE R+LA IA +   I AF N EDI+  
Sbjct: 631 -------------RRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTI 677

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           T ++ F  P + V+   R+  K +   + Y  GA
Sbjct: 678 TASQVFGMPPEYVTPIMRSRAKAVNFGIVYGIGA 711


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   I +     ++AD   IE ++ A I  ++  +KA+ N  D++  T +      I++
Sbjct: 1574 IREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINE 1633

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++KE R + K +   L Y       +T A+
Sbjct: 1634 INKEDRHVAKAINFGLLYGMNYVNLRTYAN 1663


>gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + IE RVLA I G+    +AF + ED++ TT  K FN    +V+   R   K +
Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAV 707

Query: 436 ELALGY 441
              + Y
Sbjct: 708 NFGIVY 713


>gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS  + + G   + AD + IE  VLA ++ +    +AF +G D++  T +  F+     
Sbjct: 672 IRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAFRSGGDVHRRTASLIFDVSEAD 731

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           VS EQR I K +   + Y  G   F+
Sbjct: 732 VSSEQRRIAKTINFGVMY--GMSAFR 755


>gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I     K   AD + IE R++A ++ ++  ++AF  G DI+  T +K +   +D+
Sbjct: 22  IRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDE 81

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           V+  QR   K     + Y  G   +  +A   G+D
Sbjct: 82  VTDSQRKQAKQANFGIIY--GITTY-GLAQRMGID 113


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R+LA  AG++   +AF +G D++  T +  +  P+DKV  E R   K +
Sbjct: 434 LLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAEFRKKAKAV 493

Query: 436 ELALGYQGGAKVF---KTMASHCGLDL-QQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              + Y      F     M+     D+ Q++  N  +  TF D    E+H   ++D +
Sbjct: 494 NFGIAYGETPFSFAPKHDMSVEEAEDIFQRYFANKPNIKTFID----ETHREALRDGF 547


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G  L+ AD + IE R+LA +A  +  ++AF  G+DI+  T ++ F  P++ 
Sbjct: 705 IRKAFVATPGCVLLSADYSQIELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEG 764

Query: 424 VSKEQRAIGKVMELALGY 441
           +    R   K +   + Y
Sbjct: 765 MDPLTRRRAKAINFGIIY 782


>gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
 gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253
           +G++ID     +L++    E K L+  I+ L   D  + S +Q +  L   L L      
Sbjct: 522 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPQNKSH 581

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 582 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 635

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 636 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 670

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F   +   +KE+R+I
Sbjct: 671 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDL---AKEKRSI 727

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 728 AKSINFGLVYGMGSK 742


>gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32]
          Length = 893

 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSR 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 103

 Score = 43.9 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M ++ ID++T S   + K G + YAE  +  I L   + D  PV ++D      +P ++L
Sbjct: 2  MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61

Query: 59 QYLRDETVMCVAHNSLFERILFKKTL 84
            L DE V   A N+ FER+     L
Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWL 87


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  ++ AD + IE R+ A +A      +AFANGEDI+  T  + F     +
Sbjct: 688 IRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLFG----E 743

Query: 424 VSKEQRAIGKVMELALGY 441
           V+++ R   K +  A+ Y
Sbjct: 744 VNRDTRGRAKTINFAILY 761


>gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISEDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S    S I++        AD + IE RVLA I  ++   +AF NG DI+  T  
Sbjct: 638 KAFKPTS--TDSVILS--------ADYSQIELRVLAHITQDESMKEAFINGHDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F+   D+V    R   K +   + Y
Sbjct: 688 KVFDVGADEVDSLMRRQAKAVNFGIVY 714


>gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
 gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I      LV AD + IE R+LA ++ E   ++A+ N +D++  T    F+   + 
Sbjct: 719 IRQAFIPQENWLLVSADYSQIELRILAHLSQEVVLLEAYRNNQDVHSVTAKLLFDK--ET 776

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ ++R +GK +   + Y  GA+ F
Sbjct: 777 ITPQERNLGKTINFGVIYGMGAQRF 801


>gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16]
          Length = 893

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSH 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 39/181 (21%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+ +L+H ++T+L +                +  L + V+ DGR+  T     A+ TGR 
Sbjct: 587 LEHLLAHRDVTRLRQ---------------TVEGLQKTVAPDGRIHTTYAQTIAA-TGRL 630

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +  S   + +                    CV         + L+ AD
Sbjct: 631 SSADPNLQNIPIRTESGRRIREAF------------------CVGPGF-----ETLLTAD 667

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   I+AF  GED +    AK F+     +    RA  K M   L 
Sbjct: 668 YSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMNYGLA 727

Query: 441 Y 441
           Y
Sbjct: 728 Y 728


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKL-VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +  N  +L + AD + IE R+LA ++ +   I+AF   +DI+  T A+ F     
Sbjct: 682 IRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQDIHTQTAAQVFEVEST 741

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V++E R+  K +   + Y
Sbjct: 742 QVTREMRSHAKAVNFGIVY 760


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PID 422
           +R   +   G  LV AD + IE R+LA ++ E   ++A+    DI+  T    F    I 
Sbjct: 670 IRQAFLPEPGWLLVSADYSQIELRILAHLSDEPILVEAYKTNRDIHTVTAQFLFEKDDIK 729

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF 448
            V+ E+R  GK +   + Y  GA  F
Sbjct: 730 DVTPEERRFGKTINFGVIYGMGALRF 755


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R+  + AS    ++ AD + IE R++A ++G+     AF  G DI+  T A+ +  P D
Sbjct: 706 IRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREGRDIHTETAARVYGIPRD 765

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 766 QVDAVMRRAAKTVNFGIIY 784


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 126/309 (40%), Gaps = 59/309 (19%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQT-------------INDRGYRIDLDLVLK 208
           Y   D  ATR+L+ RL  L        LL +              +   G R+D   +  
Sbjct: 475 YAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRS 534

Query: 209 LQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDL-------VDMSEG 259
           L+E ++ E  +L ++I  L  T+  I+S++Q   L   LF   G+            +E 
Sbjct: 535 LKEELSAELARLTQEIHTLAGTEFNIKSTQQ---LGNVLFGTLGLKGGKKTKTGYSTNES 591

Query: 260 TLKSILSHSNITQLAKDLILNR--LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            L++++    I +   +   ++  L++    +LKL         +GR+  T    G + T
Sbjct: 592 VLRNLIGEHPIVEKILEYREHQKMLSTYVDPLLKLAE----KDPEGRIHTTFVQTGTA-T 646

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR +      QN+P   RSE         L R              VR   +A  G +L 
Sbjct: 647 GRLASKDPNLQNIPV--RSE---------LGR-------------RVRRAFVAQEGFRLA 682

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE R+LA  +G+    +AF  GEDI++ T  K F  P +  +K  R   K +  
Sbjct: 683 SIDYSQIELRLLAHFSGDAALREAFEKGEDIHMATAIKLFG-PEEAAAK--RNFAKSINF 739

Query: 438 ALGYQGGAK 446
            L Y  G++
Sbjct: 740 GLLYGMGSR 748


>gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
          Length = 950

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     ++ AD + IE R++A ++ +   I  F   +DI+ TT ++ F T +  
Sbjct: 711 IRQAFIAPENSLIISADYSQIELRIMAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHL 770

Query: 424 VSKEQRAIGKVMELALGY 441
           V+ EQR   K +   L Y
Sbjct: 771 VTGEQRQRAKTVNFGLIY 788


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 19/129 (14%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+PR    E++   +++     +    P+ L S C            L
Sbjct: 361 TGRLSSSNPNLQNIPRSHEFEDLGVISLR-----KAFISPI-LDSHC------------L 402

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           V  D   +E RVLA   G     ++F+ +G DIY    A       + V+KE+R   KV 
Sbjct: 403 VSVDYRQVEIRVLAHFVGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVC 462

Query: 436 ELALGYQGG 444
            LAL Y  G
Sbjct: 463 CLALVYGSG 471


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G   + AD + IE  +LA ++ +    +AF  GED++  T +  F  P + 
Sbjct: 658 IREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDVHRATGSLLFGVPPEA 717

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449
           V+ EQR I K +   + Y  G   F+
Sbjct: 718 VTPEQRRIAKTINFGVIY--GMSAFR 741


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I  +   L+ AD + IE R+LA ++ E   ++A+ NG+D++  T         D+
Sbjct: 701 IRAAFIPESSWILMAADYSQIELRILAHLSQEPRLLEAYRNGQDVHTLTAQLLLEK--DQ 758

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ E+R + K++   + Y  G   F
Sbjct: 759 IAAEERRLAKIINFGVIYGMGPHRF 783


>gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 671

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 35/184 (19%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGR 319
           L+S++ H +  Q+   ++ +R A    A+      S  +++DGR R   Q+    + TGR
Sbjct: 330 LQSLVKHHHFAQI---VLNHRGALKERAMCDNYDKSAVIAADGRARIHTQWNNTKTATGR 386

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S     P                IQ + RG             +R+C +A  G+  + A
Sbjct: 387 LSSS--HPN---------------IQQVGRG------------TMRNCFVAPTGRTFIAA 417

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDK-VSKEQRAIGKVMEL 437
           D + IE RVLA ++G+D  I      + D++V  +      P+D    K  R I K    
Sbjct: 418 DYSQIELRVLAHLSGDDRLISLLRQAKGDVFVAIWNAGKGLPLDAPAEKSTRDIAKRTAY 477

Query: 438 ALGY 441
            + Y
Sbjct: 478 GIVY 481


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAIG 432
           K++ +D + IE RVLA IAG+   I+AF N  DI+  T  + F  + P D V+ E R   
Sbjct: 655 KILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNP-DDVTSEMRRQA 713

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 714 KAVNFGIVY 722


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DG++  T      ++TGR S      QN+P +             L  G  I     
Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 R   + S    L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + F
Sbjct: 638 ------RKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF 690


>gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 936

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA     +V AD + IE R++A ++ +   I  F + +DI+  T ++ F T +  
Sbjct: 697 IRQAFIAPKNFLIVAADYSQIELRIMAHLSQDIELINDFLSEKDIHTATASEIFVTALHL 756

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
           V+ EQR   K +   L Y   A
Sbjct: 757 VTDEQRQRAKTINFGLIYGMSA 778


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 50/237 (21%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVD 255
           G  ID+D++  L    +++   L+ +I +L  T+  I SS+Q   L   LF     D + 
Sbjct: 560 GMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTEFNIASSKQ---LGTVLF-----DKMG 611

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI-----LKL-NTLSEAV-----SSDGR 304
           + +    S  S+S   ++  DL+ N +  +   +      KL +T ++A+     S+ GR
Sbjct: 612 IKKSKKLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGR 671

Query: 305 LRGTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           +     FY   ++ TGR S      QN+P   RSEE                       +
Sbjct: 672 IH---TFYSMISTATGRLSSSNPNLQNIPI--RSEE----------------------GN 704

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
            +R   +A  G KLV AD + IE R++A IAG      AF   +DI+  T  + F T
Sbjct: 705 AIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITAEQIFCT 761


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S+ G ++  +D + +E RVLA I G+    + F NGEDI+ +T  + F+ P 
Sbjct: 643 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPA 702

Query: 422 D-KVSKEQRAIGKVMELALGY 441
           D ++ +  R   K +   + Y
Sbjct: 703 DAEIDRNMRRRAKAVNFGIVY 723


>gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51]
          Length = 885

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   +      +      
Sbjct: 508 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPKNKSH 567

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 568 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 621

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 622 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 656

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 657 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 713

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 714 AKSINFGLVYGMGSK 728


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DG++  T      ++TGR S      QN+P +             L  G  I     
Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 R   + S    L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + F
Sbjct: 638 ------RKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF 690


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253
           +G++ID     +L++    E   L+  I+ L   D  + S +Q    L   L L      
Sbjct: 528 QGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKSH 587

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 588 STDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 641

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 642 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 676

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F    ++++KE+R+I
Sbjct: 677 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EELAKEKRSI 733

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 734 AKSINFGLVYGMGSK 748


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 45/258 (17%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   L   L+   G+   
Sbjct: 514 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQ---LSEVLYDKLGLPKN 570

Query: 255 DMSEGTLKSILS----HSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTL 309
                  KS+L     H +I  + +   LN+L ++  + +L+L         D ++  T 
Sbjct: 571 KSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTF 624

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P                     +  P GL    +R   I
Sbjct: 625 IQTGTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 659

Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           AS+ +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+
Sbjct: 660 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEK 716

Query: 429 RAIGKVMELALGYQGGAK 446
           R+I K +   L Y  G+K
Sbjct: 717 RSIAKSINFGLVYGMGSK 734


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 45/258 (17%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   L   L+   G+   
Sbjct: 515 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQ---LSEVLYDKLGLPKN 571

Query: 255 DMSEGTLKSILS----HSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTL 309
                  KS+L     H +I  + +   LN+L ++  + +L+L         D ++  T 
Sbjct: 572 KSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTF 625

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P                     +  P GL    +R   I
Sbjct: 626 IQTGTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 660

Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           AS+ +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+
Sbjct: 661 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEK 717

Query: 429 RAIGKVMELALGYQGGAK 446
           R+I K +   L Y  G+K
Sbjct: 718 RSIAKSINFGLVYGMGSK 735


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DG++  T      ++TGR S      QN+P +             L  G  I     
Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 R   + S    L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + F
Sbjct: 638 ------RKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF 690


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 120/310 (38%), Gaps = 56/310 (18%)

Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-----ERDLWLLDQTINDRGYRIDLDL 205
           YC  DV  TR L             RL+PL D      E  L L++ T    G RID   
Sbjct: 547 YCGMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEAT----GIRIDHPY 602

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           +  L   +AQ  ++L+ +  K   G+  +      L   LF   G+D             
Sbjct: 603 LAALSTEMAQTLERLETE-AKQAAGMEFNLASPKQLGELLFDTLGLDRKKSRRTKTGYST 661

Query: 266 SHSNITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGR 319
             + + +L +D     L+L     S      ++ L + V ++ GR+         + TGR
Sbjct: 662 DATVLEKLEQDHPVVPLVLEHRTLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGR 720

Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            S      QN+P R E S  I                         R   +   G +L+ 
Sbjct: 721 LSSSNPNLQNIPVRTEFSRRI-------------------------RKAFLPQAGWQLLS 755

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+L  ++GE+   +A+ +G+D++  T           V+ ++R +GK +   
Sbjct: 756 ADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLEK--KAVTADERRLGKTINFG 813

Query: 439 LGYQGGAKVF 448
           + Y  GA+ F
Sbjct: 814 VIYGMGAQRF 823


>gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
 gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   +      +      
Sbjct: 514 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPQNKSR 573

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 574 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 627

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 628 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 662

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 663 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 719

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 720 AKSINFGLVYGMGSK 734


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 32/151 (21%)

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL  LS+ V  + R+ G  +  GAS TGR S      QN+P+                  
Sbjct: 310 KLEELSKYVK-NSRVYGEFKQIGAS-TGRMSSYKPNLQNIPKN----------------- 350

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        ++S   A +G   ++AD + IE R+ A    +   IKAF   +D++ 
Sbjct: 351 -------------LKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQEKKDLHK 397

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T +        +++KE+R + K +   L Y
Sbjct: 398 LTASVITGKDYQEITKEERNLAKAINFGLIY 428


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R ER  E                         VR   I  N   
Sbjct: 673 TGRLSSNNPNLQNIPIRTERGRE-------------------------VRKAFIPRNDDH 707

Query: 376 LVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           ++V AD + IE R++A I+ +   + AF  G DI+  T AK +   +D+V    R   K 
Sbjct: 708 VIVSADYSQIELRIIAEISKDANMMDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKA 767

Query: 435 MELALGY 441
           +   + Y
Sbjct: 768 VNFGIIY 774


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E    DG+L  +     A+ TGR S      QN+P       I T+    + RG 
Sbjct: 638 VEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP-------IRTE----VGRG- 684

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R+  +  N + + + AD + IE R++A ++ ++  I+AF +GEDI+ 
Sbjct: 685 ------------LRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFLHGEDIHR 732

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T +K +  P+ +V+ + R   K     + Y
Sbjct: 733 ATASKIYRLPLVEVTDDMRRRAKTANFGIIY 763


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +     KL+ AD + IE R+L  ++GE+    A+   ED++  T    F    D 
Sbjct: 731 IRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLFEK--DA 788

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           +  ++R IGK +   + Y  GA+ F
Sbjct: 789 IDADERRIGKTINFGVIYGMGAQRF 813


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 17/128 (13%)

Query: 331 PRQERSEEILTQTIQALNRGET---------IADPLGLASDCVRSCIIASNGKKLVV-AD 380
           PR  R      Q I A  R  +         I  PLG     +R   I ++ + L++ AD
Sbjct: 659 PRTGRVHTSFNQHITATGRLSSSNPNLQNIPIRTPLGRE---IRKAFIPTDPRNLLLSAD 715

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+ A I+G+   I+AF N EDI+  T    F+TP   ++ + R   K  E+  G
Sbjct: 716 YSQIELRIAAEISGDGKLIEAFRNREDIHSATARVIFDTP--DITPDMRR--KAKEVNFG 771

Query: 441 YQGGAKVF 448
              G + F
Sbjct: 772 VLYGIQPF 779


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           ++ I + +G K+V AD + IE RVLA  + +   ++AF +  DI+  T A+ F  P ++V
Sbjct: 652 QAFIPSESGWKIVSADYSQIELRVLAHFSKDPALVQAFRDDLDIHARTAAEVFEVPQEQV 711

Query: 425 SKEQRAIGKVMELALGY 441
           +   R   K +   + Y
Sbjct: 712 TPGMRRQAKAVNFGIVY 728


>gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52]
          Length = 889

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I+ L   D  + S +Q   +      +      
Sbjct: 512 QGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPKNKSH 571

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 572 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 625

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 626 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 660

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 661 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 717

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 718 AKSINFGLVYGMGSK 732


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  +V  D + +E R+LA I  +   I  + +G D++    + AF   I++VSK+QR  
Sbjct: 628 DGGVIVQFDYSQLELRILAVITQDPTLIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTA 687

Query: 432 GKVMELALGYQGGAK 446
            K ++  + YQ  A+
Sbjct: 688 SKKIQFGIVYQESAR 702


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++G++  I AF +GED++ +  A  F    + V+  QR   K  
Sbjct: 812 LMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKAT 871

Query: 436 ELALGY 441
              L Y
Sbjct: 872 SYGLAY 877


>gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57]
          Length = 893

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 45/258 (17%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   L   L+   G+   
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQ---LSEILYEKLGLPKN 572

Query: 255 DMSEGTLKSILS----HSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTL 309
                  KS+L     H +I  + +   LN+L ++  + +L+L         D ++  T 
Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTF 626

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P                     +  P GL    +R   I
Sbjct: 627 IQTGTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 661

Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           AS+ +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+
Sbjct: 662 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEK 718

Query: 429 RAIGKVMELALGYQGGAK 446
           R+I K +   L Y  G+K
Sbjct: 719 RSIAKSINFGLVYGMGSK 736


>gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
 gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
          Length = 115

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M  L IDIET S  PL K G + Y E     I L AY+ D++PV++ D      +P ++ 
Sbjct: 1  MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60

Query: 59 QYLRDETVM 67
            L DE V+
Sbjct: 61 LALEDEFVI 69


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +     KL+ AD + IE R+L  ++GE+    A+   ED++  T    F    D 
Sbjct: 731 IRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKILFEK--DA 788

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           +  ++R IGK +   + Y  GA+ F
Sbjct: 789 IDADERRIGKTINFGVIYGMGAQRF 813


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S+ G ++  +D + +E RVLA I G+    + F NGEDI+ +T  + F+ P 
Sbjct: 643 LIRKAFVPSHAGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPA 702

Query: 422 D-KVSKEQRAIGKVMELALGY 441
           D ++ +  R   K +   + Y
Sbjct: 703 DAEIDRNMRRRAKAVNFGIVY 723


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E    DG+L  +     A+ TGR S      QN+P       I T+    + RG 
Sbjct: 638 VEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP-------IRTE----VGRG- 684

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R+  +  N + + + AD + IE R++A ++ ++  I+AF +GEDI+ 
Sbjct: 685 ------------LRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFLHGEDIHR 732

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T +K +  P+ +V+ + R   K     + Y
Sbjct: 733 ATASKIYRLPLVEVTDDMRRRAKTANFGIIY 763


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  LV AD + IE RVLA ++G++   + F    DI+  T +  F  P + 
Sbjct: 597 IRRAFVAEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEA 656

Query: 424 VSKEQRAIGKVMELALGY 441
           V   +R   K +   + Y
Sbjct: 657 VDPFRRRAAKTVNFGVLY 674


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I+     LV AD + IE R+LA ++ E   +KA+ + +DI+  +    F+   ++
Sbjct: 702 IRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDCQDIHTLSAQLLFDK--EE 759

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ E+R +GK +   + Y  G++ F
Sbjct: 760 ITIEERNLGKTINFGVIYGMGSQRF 784


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA +G KLV  D + IE R+LA  + +   + AF +  DI+  T  K F    ++
Sbjct: 666 IRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKALVDAFNSDLDIHSQTAVKIFG---EE 722

Query: 424 VSKEQRAIGKVMELALGYQGGAK 446
            + ++R I K +   L Y  G+K
Sbjct: 723 KASQKRNIAKTINFGLLYGMGSK 745


>gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30]
          Length = 893

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSH 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E  L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
 gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
          Length = 893

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I+ L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDK 423
           R   I++N  K    D + IE RVLA +  ED  +  F N  D++     K F     ++
Sbjct: 644 RKIFISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIFKLEENEE 703

Query: 424 VSKEQRAIGKVMELALGY 441
           ++ +QR I KV    + Y
Sbjct: 704 ITSDQRRIAKVFNFGIIY 721


>gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 827

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I+ L   D  + S +Q   +      +      
Sbjct: 450 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 509

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 510 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 563

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 564 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 598

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 599 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 655

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 656 AKSINFGLVYGMGSK 670


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +A  G + L+ AD + IE R++A ++ +   I+AF +GED++    ++ F    D
Sbjct: 663 IRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLHNFVASRVFGVSPD 722

Query: 423 KVSKEQRAIGKVMELALGY 441
            V    R+  K +   L Y
Sbjct: 723 AVDPAMRSKTKAVSYGLAY 741


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%)

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   I       ++AD   IE ++ A I  +D  +KA+ N  D++  T +      I  
Sbjct: 1626 IREIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIAD 1685

Query: 424  VSKEQRAIGKVMELALGY 441
            V+KE R I K +   L Y
Sbjct: 1686 VNKEDRHIAKAINFGLIY 1703


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
            LA D VR C  A +    V  D + IE R+LA  + ++  ++AFAN EDI+  T    F
Sbjct: 627 ALAKD-VRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLRAFANDEDIHARTAISIF 685

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445
            +       + RA+ K +   L Y  G+
Sbjct: 686 GS----AEGQNRAVAKSINFGLIYGMGS 709


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +  DG++    Q    + TGR S      QN+P +             L  G  I 
Sbjct: 594 LLKEIHEDGKIHTRFQ-QALTTTGRLSSINPNLQNIPVR-------------LEEGRKIR 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     ++ + +  G  +V AD + IE RVLA ++ ++  ++AF +  DI+ TT +
Sbjct: 640 ----------KAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTAS 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
             F+   ++V+ + R   K +   + Y
Sbjct: 690 DVFHVTEEEVTSDMRRAAKAVNFGIVY 716


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE R++A ++ +   I+AF +G D +  T A  F    +
Sbjct: 669 IRQAFVVGKGYEALLTADYSQIEMRIMAHLSQDQALIEAFRSGFDFHAATAASVFGVRPE 728

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V  E R   K M   L Y
Sbjct: 729 QVDAEMRRRVKAMNYGLAY 747


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 82/213 (38%), Gaps = 50/213 (23%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + ++ + +S+DG +R +    GA  TGR S      Q +PR                   
Sbjct: 174 IESIQDKMSNDGFVRASYMQLGAD-TGRMSSIKPNNQQIPRDSE---------------- 216

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        R C+ A  G K+V AD + +E R+ A +A +     AF  GED++  
Sbjct: 217 ------------FRQCVQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGEDLHDY 264

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK---- 467
           T   A     D      R I K     L Y  GA+  +  A   G+ +    + VK    
Sbjct: 265 T---AEQMGCD------RQIAKSANFGLLYGAGAEGLRKYAGSSGV-IMTNDEAVKIRDN 314

Query: 468 ---STSTFEDWEQAESHHLWMQ---DQYPEFAV 494
              + S   DW Q E ++L      D++PE  V
Sbjct: 315 WLTTYSGIRDW-QREMNYLSRSTEGDEWPETRV 346


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDIKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D D +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 42/186 (22%)

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
           E  LKSIL +   ++L        +++  S       LS+ +  S GR+    +  G + 
Sbjct: 484 ENLLKSILKYREFSKL--------ISTYTSK------LSDYIDRSTGRIHTQFKQTGTA- 528

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P+                +GE       L S+ +RS  ++  G   
Sbjct: 529 TGRLSSVNPNLQNIPQ----------------KGE-------LGSE-IRSAFVSKEGYSF 564

Query: 377 VVADLAGIEARVLAWIA-GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +  D + IE R+LA I+  E+ KI AF    DI+  T  K F     +++++ R I K +
Sbjct: 565 LSIDYSQIELRILAHISDDENLKI-AFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAV 623

Query: 436 ELALGY 441
              + Y
Sbjct: 624 NFGIIY 629


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           VR   + S+   ++++ D + IE R+LA ++ +   I AF N EDI+  T  K FN   D
Sbjct: 629 VRKIFVVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKD 688

Query: 423 KVSKEQRAIGKVMELALGY 441
           +++   R   K +   + Y
Sbjct: 689 EITPNIRRSAKAVNFGIIY 707


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G  LV AD + IE R+LA +  E   ++AF  G D++  T         ++
Sbjct: 703 IRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLLEAFQTGGDVHTLTARLLLGR--EE 760

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V+ E+R + K++   + Y  GA+ F
Sbjct: 761 VTSEERRLAKIINYGVVYGMGARRF 785


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 27/127 (21%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P R E   EI                         R   I S    
Sbjct: 609 TGRLSSTEPNLQNIPIRTEEGREI-------------------------RKAFIPSRSDM 643

Query: 376 LVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           +++A D + IE RV A ++G+    +AF N  DI+  T A+ F    + V+ + R   KV
Sbjct: 644 ILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRRHAKV 703

Query: 435 MELALGY 441
           +   + Y
Sbjct: 704 INFGIAY 710


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
            VR  ++A  G +LVVAD A +E R+LA +AG+   +   A  +D+Y     +AF
Sbjct: 328 VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 382


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++   +AF NG+DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V    R   K +   + Y
Sbjct: 688 KVFGVEADQVDILMRRQAKAVNFGIVY 714


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G  L+ AD + IE R+LA IA      +AFA  +DI+  T ++ F   ++ 
Sbjct: 725 IRTAFIAPKGCVLLSADYSQIELRILAHIANITALKEAFAQDQDIHAITASQIFGVAVEG 784

Query: 424 VSKEQRAIGKVMELALGY 441
           +  + R   K +   + Y
Sbjct: 785 MPSDIRRRAKAINFGIIY 802


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
            VR  ++A  G +LVVAD A +E R+LA +AG+   +   A  +D+Y     +AF
Sbjct: 318 VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 372


>gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
 gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
          Length = 893

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I+ L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKDELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464]
          Length = 893

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I+ L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R     S G  ++VAD + IE R+ A    ++  I AF  G+D++  T +       ++
Sbjct: 139 LRVLFRPSKGYSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEE 198

Query: 424 VSKEQRAIGKVMELALGY 441
           ++KE+R + K +   L Y
Sbjct: 199 ITKEERQLAKAINFGLIY 216


>gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20]
          Length = 893

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I+ L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S+D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 594 LQKVISNDKRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                +S+   S I++        AD + IE RVLA I  +D   +AF +G+DI+  T  
Sbjct: 640 KAFKPSSE--DSVILS--------ADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATAR 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    ++V+   R   K +   + Y
Sbjct: 690 KVFGVEAEEVTDLMRRQAKAVNFGIVY 716


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 866

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +A     L++A D + I+ R LA I+G++  I+ F +G DI+  T  + F+ P++
Sbjct: 626 IRQAFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSGVDIHTRTAVEIFHVPVE 685

Query: 423 KVSKEQRAIGKVMELALGY 441
            V  E R   K +   + Y
Sbjct: 686 WVDSELRRRAKAVNFGIIY 704


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S+D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 594 LQKVISNDKRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                +S+   S I++        AD + IE RVLA I  +D   +AF +G+DI+  T  
Sbjct: 640 KAFKPSSE--DSVILS--------ADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATAR 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    ++V+   R   K +   + Y
Sbjct: 690 KVFGVEAEEVTDLMRRQAKAVNFGIVY 716


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+        
Sbjct: 689 IRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQS 748

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K +   + Y
Sbjct: 749 VTSTQRRAAKTVNFGVLY 766


>gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
 gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
          Length = 816

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G   + AD + IE R+LA+IA  +    A A+G D++  T ++ F T  DK
Sbjct: 580 IRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DK 637

Query: 424 VSKEQRAIGKVMELALGY 441
           ++   R   K +   + Y
Sbjct: 638 ITPNLRNKAKAVNFGIVY 655


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           VR   +A N    L+ AD + IE R++A I+G+   I AF  G DI+  T AK +   + 
Sbjct: 699 VRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMIDAFRQGLDIHAATAAKVYGVELA 758

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ + R   K +   + Y
Sbjct: 759 DVTADMRRNAKSVNFGIIY 777


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+        
Sbjct: 686 IRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQS 745

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K +   + Y
Sbjct: 746 VTSTQRRAAKTVNFGVLY 763


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  +  AD + IE R+LA ++ E   ++A+   EDI+  T    F    D 
Sbjct: 723 IRKAFLPKSGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--DD 780

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ ++R I K +   + Y  G+  F
Sbjct: 781 INSDERRIAKTINFGVIYGMGSLKF 805


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 25/125 (20%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                     I  PLG   +  ++ I +++ + L
Sbjct: 671 TGRLSSSNPNLQNIP---------------------IRTPLG--REIRKAFIPSTSDRYL 707

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R+ A I+ +   I AF N EDI+  T    F+T  D ++K+ R   K + 
Sbjct: 708 LSADYSQIELRIAAEISQDSHLIDAFRNREDIHTATAKTIFDT--DDITKDMRRKAKEVN 765

Query: 437 LALGY 441
             + Y
Sbjct: 766 FGVLY 770


>gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A]
          Length = 893

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSH 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E +L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   I+S+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFISSS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 57/312 (18%)

Query: 160 GEYCKRDVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           G+YC  D  AT  L  +L       P     L + E+ L  +   + DRG RID D +  
Sbjct: 538 GQYCGLDCYATYLLASKLQKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQT 597

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR------MYLFLITGIDLVDMSEGTLK 262
           L + +A       E+++ +      ++ +++ L         LF   G+D     +    
Sbjct: 598 LSQQLA-------ENLLTIETAAYEAAGESFNLSSPKQLGTILFDKLGLDRKKSRKTKTG 650

Query: 263 SILSHSNITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRT 317
               H+ + +L  D  +I   L     A LK   ++ L E V+   +   T      + T
Sbjct: 651 YSTDHATLEKLQGDHPIIDAILEHRTLAKLKSTYVDALPELVNGQTQRIHTDFNQAVTST 710

Query: 318 GRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           GR S      QN+P R + S +I                         R   +      L
Sbjct: 711 GRLSSSNPNLQNIPIRSDFSRQI-------------------------RRAFLPQKDWLL 745

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE R+LA ++ E   ++A+ + +D++  T    F    + ++  +R +GK + 
Sbjct: 746 VSADYSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTIN 803

Query: 437 LALGYQGGAKVF 448
             + Y  GA+ F
Sbjct: 804 FGVIYGMGAQRF 815


>gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
 gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
          Length = 1200

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   I+ +G  ++  D   IE RV++  + +   I  F N +D+     +K  N  I+ 
Sbjct: 914  IRDAFISRDGYTMLAYDYNQIELRVMSHFSNDKHLINYFNNNQDVIRRMASKLLNKEIND 973

Query: 424  VS-----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            V+     K +R +  +M   +G Q   K+ K   S   L +  F +     S+F
Sbjct: 974  VTTDEREKTKRVVYGIM-YGIGPQSLGKLLKISTSAAELLINNFYKEFPQISSF 1026


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I SN G  L+ AD + IE R+ A ++G+   I+AF N EDI+  T    F+T   
Sbjct: 708 IRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEAFRNHEDIHAATARVIFDT--K 765

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF 448
           +++ + R   K  E+  G   G + F
Sbjct: 766 EITPDMRR--KAKEVNFGVLYGIQPF 789


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 47/181 (25%)

Query: 278 ILNRLASSGSAILKL---------------NTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
           +L  LAS G+ +  L               + L  A++ + GR+  +    GA +TGR S
Sbjct: 677 VLETLASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVGA-QTGRLS 735

Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
                 QN+P R E   +I                         R   +A  G  L+ AD
Sbjct: 736 SNDPNLQNIPVRTEIGRQI-------------------------RDAFVAEPGHVLLSAD 770

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+ A IA      +AFA+GEDI+  T  + F     +V+++ R   K +  A+ 
Sbjct: 771 YSQIELRLAAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAIL 826

Query: 441 Y 441
           Y
Sbjct: 827 Y 827


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S  +  L+ AD + IE R+ A ++G++  I AF NGEDI+  T    F T  +
Sbjct: 682 IRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGEDIHTATAQVIFGT--E 739

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF 448
           ++S + R   K  E+  G   G + F
Sbjct: 740 EISSDMRR--KAKEVNFGVLYGIQPF 763


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 58/252 (23%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           +KSI+ +  +T+L    I                L +A  SDG++  T+     ++TGR 
Sbjct: 574 IKSIMEYRTLTKLYSTYI--------------EGLKKACYSDGKVH-TIFNQALTQTGRL 618

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +             L  G  I           ++ + +  G  ++ AD
Sbjct: 619 SSIEPNLQNIPIR-------------LEEGRLIR----------KAFVPSEEGWVILGAD 655

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA I+  +  I+AF  GEDI+  T    F    ++++ + R   K +   + 
Sbjct: 656 YSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGII 715

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---DQYPEFAVKD- 496
           Y              G+     S+N+  T   ++ ++   H+L      +QY E  VKD 
Sbjct: 716 Y--------------GMSAFGLSENLNITQ--KEAKKYIDHYLETYSGINQYMEDTVKDA 759

Query: 497 KLIGTACELVKK 508
           K  G A  L  +
Sbjct: 760 KFHGYATTLFNR 771


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  ++  D + +E R+L  IA +    +AF NGED++  T +  +  P D V K+ R   
Sbjct: 723 GGGMLQLDYSALEMRILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRA 782

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           K +   + Y  G   F ++A   G+ +++
Sbjct: 783 KSVNFGIAY--GESPF-SIAPKLGVTVEE 808


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 29/170 (17%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  I    K  +  D + IE R+LA  + +   I+AF N +DI++ T AK F    DK
Sbjct: 647 IRNAFITD--KLFISLDYSQIELRLLAHFSKDPHLIEAFLNDKDIHLETAAKIFGE--DK 702

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDW------- 475
            +KE R+I K +   L Y  G K      +    + ++F +   ++ ST +D+       
Sbjct: 703 -AKEYRSIAKSINFGLIYGMGPKKLSETINVSTKEAKEFIEKYFENFSTVKDFIEKTKVE 761

Query: 476 --EQAESHHLWMQDQYPEF--------------AVKDKLIGTACELVKKA 509
             E+     L+ + ++ +F              AV     G+A +++KKA
Sbjct: 762 TKEKGYVETLFKRRRFFDFNSANARTLAAYEREAVNTIFQGSAADIIKKA 811


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+ AD + IE R+ A +A      +AFA GEDI+  T  + F T    
Sbjct: 705 IRDAFVAEPGNVLLAADYSQIELRLAAHMADVPALKEAFAAGEDIHARTAMEMFGT---- 760

Query: 424 VSKEQRAIGKVMELALGY 441
           V ++ R   K +  A+ Y
Sbjct: 761 VDRDTRGRAKTINFAILY 778


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 26/129 (20%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   RSEE                         +R+  + S+  
Sbjct: 627 TQTGRLSSVDPNLQNIPM--RSEE----------------------GRLIRTAFVPSHPN 662

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRAIG 432
            ++  AD + IE RVLA + G+    KAF NGEDI+  T    F    D V    +R   
Sbjct: 663 WQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTA 722

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 723 KAVNFGIVY 731


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 28/145 (19%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           +GR+  +    G + TGR S      QN+P          +T Q L              
Sbjct: 633 EGRIHTSFVQTGTA-TGRLSSKNPNLQNIP---------ARTSQGLK------------- 669

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   +A  GKKL+  D + IE R+LA  + +   + AF   +DI++ T    F    
Sbjct: 670 --IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDIHLQTAIALFG--- 724

Query: 422 DKVSKEQRAIGKVMELALGYQGGAK 446
           ++ +  +RA+ K +   L Y  G K
Sbjct: 725 EEEAPSKRAVAKTVNFGLLYGMGQK 749


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 58/252 (23%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           +KSI+ +  +T+L    I                L +A  SDG++  T+     ++TGR 
Sbjct: 574 IKSIMEYRTLTKLYSTYI--------------EGLKKACYSDGKVH-TIFNQALTQTGRL 618

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +             L  G  I           ++ + +  G  ++ AD
Sbjct: 619 SSIEPNLQNIPIR-------------LEEGRLIR----------KAFVPSEEGWVILGAD 655

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA I+  +  I+AF  GEDI+  T    F    ++++ + R   K +   + 
Sbjct: 656 YSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGII 715

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---DQYPEFAVKD- 496
           Y              G+     S+N+  T   ++ ++   H+L      +QY E  VKD 
Sbjct: 716 Y--------------GMSAFGLSENLNITQ--KEAKKYIDHYLKTYSGINQYMEDTVKDA 759

Query: 497 KLIGTACELVKK 508
           K  G A  L  +
Sbjct: 760 KFHGYATTLFNR 771


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            VR  ++A  G +LVVAD A +E R+LA +AG+   +   A  +D+Y     +AF    D
Sbjct: 328 VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDAGLLDVAAKADDLYAAVSDRAFAGDRD 387

Query: 423 KV 424
           + 
Sbjct: 388 RA 389


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 26/129 (20%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   RSEE                         +R+  + S+  
Sbjct: 627 TQTGRLSSVDPNLQNIPM--RSEE----------------------GRLIRTAFVPSHPN 662

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRAIG 432
            ++  AD + IE RVLA + G+    KAF NGEDI+  T    F    D V    +R   
Sbjct: 663 WQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTA 722

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 723 KAVNFGIVY 731


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 278 ILNRLASSGSAI---LKLNTLSEAVSS-----------DGRLRGTLQFYGASRTGRWSGC 323
           ILN+L      I   LK  TLS+  S+           DG++  T+     ++TGR S  
Sbjct: 557 ILNKLKDIHPIIDKVLKYRTLSKLYSTYIIGLQDQVFIDGKIH-TIYNQALTQTGRLSST 615

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                     +  P G     +R   +      LV  D + 
Sbjct: 616 DPNLQNIP---------------------VKTPEG---KLIRKAFVPEYDY-LVSFDYSQ 650

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA +AG    IKAF   +DI+  T ++ F  P ++V    R   K +   + Y  
Sbjct: 651 IELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGIIY-- 708

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
           G   F  +A   G+ + +  + +K    FE++ + +   L+M D   +F  K+  + T
Sbjct: 709 GMSDF-GLAEQVGVSVGEAREFIK--RYFENYPEIK---LYM-DSNIDFCKKNGYVTT 759


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 25/117 (21%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P +             L +G  I        + V S +++S   
Sbjct: 615 TQTGRLSSVDPNLQNIPVR-------------LEQGRLIRK--AFVPEEVNSVLLSS--- 656

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
                D + IE RVLA I+G++  I AF +G DI+ +T  + FN   P D    ++R
Sbjct: 657 -----DYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRR 708


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 32/151 (21%)

Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           + L   ++ D GR+  +    GA +TGR S      QN+P R E   +I           
Sbjct: 641 DALQAQINKDSGRVHTSYSLTGA-QTGRLSSTDPNLQNIPIRTEVGRQI----------- 688

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   +A  G  ++ AD + IE R+ A +A      +AFA GEDI+ 
Sbjct: 689 --------------RHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAFAAGEDIHA 734

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T  + F     +V++E R   K +  A+ Y
Sbjct: 735 ATAEQLFG----EVNRETRGRAKTINFAILY 761


>gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG]
          Length = 401

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 41/199 (20%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F  TG  +VD  EGTLK I +H +  +   D +L +       I ++ +  +A+  DGR+
Sbjct: 193 FTPTGQPIVD--EGTLKKI-THIHEAKPIADFLLYQ-----KRIAQIQSWLDALEEDGRV 244

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            G++     + TGR S       N P               + +   +  P G+  +C R
Sbjct: 245 HGSV-IPNGTITGRMS------HNHPN--------------VAQVPAVYSPFGV--EC-R 280

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           +C     G  LV  D +G+E R+LA    ++  I    NG DI+ T    A         
Sbjct: 281 ACWTVEEGNVLVGVDASGLELRMLAHYMNDEEYINEVVNG-DIHTTNQKLA--------G 331

Query: 426 KEQRAIGKVMELALGYQGG 444
            E R   K    AL Y  G
Sbjct: 332 LESRDTAKTFIYALVYGAG 350


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   IAS  +  L+ AD + IE R+ A ++G+   I+AF N EDI+  T    F+T  +
Sbjct: 708 IRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIEAFRNQEDIHAATAKAIFDT--E 765

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+ + R   K +   + Y
Sbjct: 766 DVTSDMRRKAKEVNFGVLY 784


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
           A  L  +   VR C +A  G  +   D    E RVLA ++ +   I+AF  G D++  T 
Sbjct: 365 AQTLPASDSTVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTMIEAFKTGADLHQMTA 424

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
             A  T         R +GK+      Y GGA   KT+A    +D 
Sbjct: 425 DAAQVT---------RKVGKMANFLTVYGGGA---KTLAEQAKVDF 458


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  L+ AD + IE R+ A +A      +AFA GEDI+  T  + F +    
Sbjct: 710 IRQAFVADEGNVLLAADYSQIELRLAAHMADVAPLREAFAAGEDIHARTAQEMFGS---- 765

Query: 424 VSKEQRAIGKVMELALGY 441
           V ++ RA  K +  A+ Y
Sbjct: 766 VDRDTRARAKTINFAILY 783


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 40/178 (22%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   RS+E                         +R+  + S   
Sbjct: 627 TQTGRLSSVDPNLQNIPM--RSDE----------------------GRQIRTAFVPSQPD 662

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF----NTPIDKVSKEQR 429
            ++  AD + IE RVLA + G+    +AF NGEDI+  T    F      P++ V   QR
Sbjct: 663 WQIFGADYSQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAV---QR 719

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
              K +   + Y  G   F  +A++ G+   Q  Q +   + F+++ +    H WM++
Sbjct: 720 RTAKAVNFGIVY--GISDFG-LANNLGISRAQAKQFID--TYFKEFPKV---HEWMEN 769


>gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           VR  + A++G KL+VAD A +E RVLA +A +D K+   A   D+Y    A+ F 
Sbjct: 331 VRGAVHANHGYKLIVADAAQLEPRVLAALA-QDAKMAEAAQDHDLYAGIAAQGFG 384


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 32/151 (21%)

Query: 293 NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           + L E V ++ GR+  +    GA +TGR S      QN+P R E   +I           
Sbjct: 650 DALQEQVNATTGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIRTEVGRQI----------- 697

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R   IA+ G  L+ AD + IE R+ A +A      +AFA G+DI+ 
Sbjct: 698 --------------RDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHA 743

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            T  + F     +V+++ R   K +  ++ Y
Sbjct: 744 ATAIELFG----EVNRDTRGKAKTVNFSILY 770


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQ 428
           A N   LV  D +  EAR+   +AG++  I AF +   D++  T +  F  P+++V+K+ 
Sbjct: 31  ARNHDTLVFTDYSAQEARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDL 90

Query: 429 RAIGKVMELALGY 441
           R   K +   L Y
Sbjct: 91  RTRAKAVTFGLMY 103


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 32/176 (18%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422
           +R   +A     L+  D + IE RVLA ++G++   +A+ N  D++  T  K F  +  +
Sbjct: 665 IRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEE 724

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL------------------------D 458
           +VS+E+R I K +  ++ Y  G   F  +A   G+                        +
Sbjct: 725 EVSREERIIAKTINFSIIY--GKTAF-GLAKELGISQKEASEYIDRYFNQYPKVKGFEKE 781

Query: 459 LQQFSQNVKSTSTFEDWEQ----AESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +F++    T TF    +      S +  ++ Q    AV   + GTA E++KK  
Sbjct: 782 IVEFTEKHGYTETFFGRRRLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVM 837


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S+    L+ AD + IE R+ A ++G+   + AF N EDI+ TT    F T  D
Sbjct: 689 IRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTMLGAFQNREDIHSTTAKLIFET--D 746

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+K+ R   K +   + Y
Sbjct: 747 EVTKDMRRKAKEVNFGVLY 765


>gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99]
 gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I
 gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 36/188 (19%)

Query: 261 LKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    G + TGR
Sbjct: 587 LKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQTGTA-TGR 639

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P                     +  P GL    +R   IAS+ +  L+ 
Sbjct: 640 LSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEYCLLG 675

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 676 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFG 732

Query: 439 LGYQGGAK 446
           L Y  G+K
Sbjct: 733 LVYGMGSK 740


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +      L+ AD + IE R+L  ++GE+   +A+ +G+D++  T     +   D+
Sbjct: 733 IRKAFLPQEHWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DE 790

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ ++R +GK +   + Y  GA+ F
Sbjct: 791 ITADERRLGKTINFGVIYGMGAQRF 815


>gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87]
 gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87]
          Length = 887

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 26/148 (17%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 603 LQKVISKDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKI- 647

Query: 355 DPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     R     ++   +++ AD + IE RVLA I  ++   +AF NG DI+  T 
Sbjct: 648 ----------RKAFKPTDKDSVILSADYSQIELRVLAHITQDESLKEAFINGNDIHTATA 697

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441
            K FN   ++V    R   K +   + Y
Sbjct: 698 MKVFNVEANEVDSLMRRQAKAVNFGIVY 725


>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
 gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           + +R   IA  G K++ AD + IE R+LA +A      +AFAN +DI+  T  + F   +
Sbjct: 606 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANEQDIHDITARQVFG--V 663

Query: 422 DKVSKEQRAIGKVMELALGY 441
            ++ ++ R   K +   + Y
Sbjct: 664 QEIDEQLRRKAKSINFGIIY 683


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +RS I    G + L+ AD + IE R++A ++G+   I+AF  GED++    +  F     
Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFGVEPA 712

Query: 423 KVSKEQRAIGKVMELALGY 441
            VS   R   K M   L Y
Sbjct: 713 DVSPAMRTKVKAMSYGLAY 731


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           ++ + A  G  ++ +D + IE RVLA I G+    +AF NGEDI+ TT  K F
Sbjct: 648 QAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHATTAVKIF 700


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 25/111 (22%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L +L E +  DGR+R T +    + TGR S      QNLP   R+EE           G 
Sbjct: 594 LESLEECIDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLPI--RTEE-----------GR 639

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            I           R    A   K L+ AD + IE RVLA +A +    ++F
Sbjct: 640 KI-----------RKAFKADKDKVLIDADYSQIELRVLAHLANDKKNARSF 679


>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
          Length = 817

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           + +R   IA  G K++ AD + IE R+LA +A      +AFAN +DI+  T  + F   +
Sbjct: 565 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANEQDIHDITARQVFG--V 622

Query: 422 DKVSKEQRAIGKVMELALGY 441
            ++ ++ R   K +   + Y
Sbjct: 623 QEIDEQLRRKAKSINFGIIY 642


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D D +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSCKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F N  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLCNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018]
          Length = 889

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 353 IADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
           +  P GL    +R   IAS+ +  L+  D + IE R+LA  + +   ++AF  G DI++ 
Sbjct: 644 VRSPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 700

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           T    F    + ++KE+R+I K +   L Y  G+K
Sbjct: 701 TSKALFG---EDLAKEKRSIAKSINFGLVYGMGSK 732


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 471

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 579

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +   GK L   D +G E R++AW +G++  I+ F  G D++  T +        +
Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAE 602

Query: 424 VSKEQRAIGKVMELALGYQG 443
           + K++R   K     + Y G
Sbjct: 603 IVKKERTDAKAGNFGISYGG 622


>gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
 gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
          Length = 880

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 27/150 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           + E+V  D R+  T+     + TGR S      QN+P   R+EE                
Sbjct: 599 IKESVFEDNRVH-TIYNQALTLTGRLSSLEPNLQNIPI--RTEE---------------- 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   I       V AD + IE RVLA +A      +AF   +DI+  T  
Sbjct: 640 ------GRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQ 693

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           K F+  +D V  EQR   K +   + Y  G
Sbjct: 694 KVFH--VDTVDSEQRRRAKAVNFGIIYGIG 721


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 11/120 (9%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADP--------LGLASDCVRSCIIASNGKKLVVADL 381
           L +  +      QT+ A  R  + A+P        L L  +  R+ I +++    + AD 
Sbjct: 589 LDKNNKLHSTFNQTVTATGRISS-AEPNLQNIPIRLALGKEIRRAFIPSNDDYVFLDADY 647

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++ +    +AF  G DI+ +T ++ F   +D V++ QR   K +   + Y
Sbjct: 648 SQIELRVLASLSADANMQRAFLEGIDIHTSTASEVFG--VDTVTQAQRNAAKAVNFGVVY 705


>gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908]
          Length = 889

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 353 IADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
           +  P GL    +R   IAS+ +  L+  D + IE R+LA  + +   ++AF  G DI++ 
Sbjct: 644 VRSPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 700

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           T    F    + ++KE+R+I K +   L Y  G+K
Sbjct: 701 TSKALFG---EDLAKEKRSIAKSINFGLVYGMGSK 732


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 26/130 (20%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P + ER  +I                         R+    + G  
Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKI-------------------------RAAFKPTKGNI 693

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE  +LA ++ ++  I+AF + +DI++ T +K F      ++   R I K +
Sbjct: 694 FISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSI 753

Query: 436 ELALGYQGGA 445
              + Y+  A
Sbjct: 754 NFGIIYRMSA 763


>gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017]
          Length = 889

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 353 IADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
           +  P GL    +R   IAS+ +  L+  D + IE R+LA  + +   ++AF  G DI++ 
Sbjct: 644 VRSPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 700

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           T    F    + ++KE+R+I K +   L Y  G+K
Sbjct: 701 TSKALFG---EDLAKEKRSIAKSINFGLVYGMGSK 732


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +   GK L   D +G E R++AW +G++  I+ F  G D++  T +        +
Sbjct: 342 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAE 401

Query: 424 VSKEQRAIGKVMELALGYQG 443
           + K++R   K     + Y G
Sbjct: 402 IVKKERTDAKAGNFGISYGG 421


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 471

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 579

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253
           +G++ID     +L++    E   L+  I+ L   D  + S +Q +  L   L L      
Sbjct: 512 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPKNKSH 571

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 572 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 625

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 626 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 660

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+R+I
Sbjct: 661 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSI 717

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 718 AKSINFGLVYGMGSK 732


>gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27]
 gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27]
          Length = 905

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253
           +G++ID      L++    E   L+  I+ L   D  + S +Q +  L   L L      
Sbjct: 528 QGFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVDFNLNSPKQLSEVLYEKLGLPKNKSH 587

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 588 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 641

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 642 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 676

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+R+I
Sbjct: 677 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGG---DLAKEKRSI 733

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 734 AKSINFGLVYGMGSK 748


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422
           +R C+ A  G  LVVAD A +E RVLA ++G D ++   +   D+Y +     F  TPI+
Sbjct: 321 LRGCVRADPGWTLVVADAAQLEPRVLAALSG-DRRLAEVSADADLYTSLTHTLFGRTPIE 379

Query: 423 KVSKEQRAIGKVMELALGYQG 443
               + RA  K+  L+  Y G
Sbjct: 380 ----DDRARAKIAMLSAMYGG 396


>gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
 gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
          Length = 72

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 4  LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-R 62
          L+ D+ET    P+   G  AYAE   + L A+A +DEPV +WD T    +P  L + +  
Sbjct: 6  LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 64

Query: 63 DETVMCVA 70
           ET+M ++
Sbjct: 65 PETLMPIS 72


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S   +  +I S       AD + IE RVLA I  ++    AF N  DI+  T  
Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINRHDIHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   D+V    R   K +   + Y
Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +   GK L   D +G E R++AW +G++  I+ F  G D++  T +        +
Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAE 602

Query: 424 VSKEQRAIGKVMELALGYQG 443
           + K++R   K     + Y G
Sbjct: 603 IVKKERTDAKAGNFGISYGG 622


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 26/130 (20%)

Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           TGR S      QN+P + ER  +I                         R+    + G  
Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKI-------------------------RAAFKPTKGNI 693

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE  +LA ++ ++  I+AF + +DI++ T +K F      ++   R I K +
Sbjct: 694 FISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSI 753

Query: 436 ELALGYQGGA 445
              + Y+  A
Sbjct: 754 NFGIIYRMSA 763


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
           A   +R   IA  GKKL+  D + IE R+LA  + +   + AF    DI++ T    F  
Sbjct: 668 AGKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLDAFRKDLDIHLRTAQMVFGE 727

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446
                +K +R I K +   L Y  G +
Sbjct: 728 D----AKNKRHIAKTINFGLIYGMGTR 750


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 471

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 579

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
            LA D +R+     +G  L+  D + IE R+LA  + +   I+AF NG+DI+  T    F
Sbjct: 639 NLAKD-MRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALIEAFKNGDDIHARTAISIF 697

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445
                + + + RAI K +   L Y  G+
Sbjct: 698 G----ESNTQNRAIAKSINFGLIYGMGS 721


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 28/138 (20%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + + +DGR+  T      ++TGR S      QN+P +             L +G    
Sbjct: 601 LQDYIMADGRIH-TRYLQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 643

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R     S+    L+ +D + IE RVLA I+G++  I AF  G DI+ +T 
Sbjct: 644 --------LIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695

Query: 414 AKAFNT--PIDKVSKEQR 429
            + F    P D  + ++R
Sbjct: 696 MRVFGIEKPEDVTANDRR 713


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 28/138 (20%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + + +DGR+  T      ++TGR S      QN+P +             L +G    
Sbjct: 601 LQDYIMADGRIH-TRYLQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 643

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R     S+    L+ +D + IE RVLA I+G++  I AF  G DI+ +T 
Sbjct: 644 --------LIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695

Query: 414 AKAFNT--PIDKVSKEQR 429
            + F    P D  + ++R
Sbjct: 696 MRVFGIEKPEDVTANDRR 713


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254
           +G++ID     +L++    E   L+  I++L   D  + S +Q   +      +      
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLGEILYEKLKLPKNKSH 575

Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
              E  L  IL  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 576 STDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F   +   +KE+R+I
Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDL---AKEKRSI 721

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 722 AKSINFGLVYGMGSK 736


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           +LV AD + IE R+LA  + +   + AF +GEDI+    A+     ++ V+ + R I K 
Sbjct: 727 RLVCADYSQIELRMLAHFSQDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKA 786

Query: 435 MELALGY 441
           +   + Y
Sbjct: 787 VNFGVMY 793


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 36/188 (19%)

Query: 261 LKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    G + TGR
Sbjct: 164 LKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQTGTA-TGR 216

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P                     +  P GL    +R   IAS+ +  L+ 
Sbjct: 217 LSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEYCLLG 252

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F   +   +KE+R+I K +   
Sbjct: 253 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDL---AKEKRSIAKSINFG 309

Query: 439 LGYQGGAK 446
           L Y  G+K
Sbjct: 310 LVYGMGSK 317


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           LA D VR C  A  G   V  D + IE R+LA  + +   ++AF N EDI+  T    F 
Sbjct: 643 LAKD-VRECFEAREGYSFVGLDYSQIELRLLAHFSRDPALLEAFKNDEDIHARTAISIFG 701

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGA 445
           +       + RA+ K +   L Y  G+
Sbjct: 702 SS----DGQNRAVAKSINFGLIYGMGS 724


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 607 LQKVISKDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 652

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S+   S I++        AD + IE RVLA I  ++   +AF +G DI+  T  
Sbjct: 653 KAFKPTSE--DSVILS--------ADYSQIELRVLAHITQDESLKEAFIHGHDIHTATAM 702

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K FN   + V    R   K +   + Y
Sbjct: 703 KVFNVEANDVDSLMRRQAKAVNFGIVY 729


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 30/183 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +   S+ R+  T    G + TGR S      QN+P          +T + +       
Sbjct: 601 LPKLADSENRIHTTFHQNGTA-TGRLSSSNPNIQNIP---------VKTDEGIK------ 644

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   ++  G   +  D + IE RVLA ++ ++  I A+   +D++  T  
Sbjct: 645 ---------IRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKDKDLHDLTAR 695

Query: 415 KAF-NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           K F  T  + VS+E+R+I KV+  ++ Y     G +K  K       L + ++ +     
Sbjct: 696 KLFFKTDEEPVSREERSIAKVINFSILYGKTPFGLSKELKIPMGDAKLYINKYFEEYPRV 755

Query: 470 STF 472
            TF
Sbjct: 756 RTF 758


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 28/138 (20%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + + +DGR+  T      ++TGR S      QN+P +             L +G    
Sbjct: 614 LQDYIMADGRIH-TRYLQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 656

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R     S+    L+ +D + IE RVLA I+G++  I AF  G DI+ +T 
Sbjct: 657 --------LIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 708

Query: 414 AKAFNT--PIDKVSKEQR 429
            + F    P D  + ++R
Sbjct: 709 MRVFGIEKPEDVTANDRR 726


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS      GK L   D +G E R++AW + ++  I+ F    D++  T +     P   
Sbjct: 576 IRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMIELFNTNGDMHRRTASALTGKPESD 635

Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKT 450
           ++K +R   K     + Y G      K FKT
Sbjct: 636 ITKIERTNAKAGNFGIAYGGTEYALQKTFKT 666


>gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20]
 gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains
           [Leuconostoc citreum KM20]
          Length = 893

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 27/116 (23%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   R+EE           G  I           R+ + +    
Sbjct: 627 TQTGRLSSVDPNLQNIPM--RTEE-----------GRQIR----------RAFVPSQPNW 663

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF----NTPIDKVSK 426
           ++  AD + IE RVLA I G+    +AF NGEDI+  T    F    N P+D + +
Sbjct: 664 QIFGADYSQIELRVLAHITGDQNMQRAFLNGEDIHAETARAVFGLDNNAPVDPLMR 719


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 74/193 (38%), Gaps = 43/193 (22%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS------DGRLRGTLQFYGASRTGRWSGCVFQP 327
           AKD+I     SS     KL+ L E +S       + R+       GA  TGR S      
Sbjct: 284 AKDVI-----SSVLEFRKLHKLQEKLSEILEYNENNRIHPEFWQIGAV-TGRMSSSRPNV 337

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+PR+                              +RS + A +G   V+AD + IE R
Sbjct: 338 QNIPRE------------------------------LRSILKAKDGYVFVIADFSQIELR 367

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           + A    ++  I     GED++  T +      ++ ++KE+R   K     L Y    K 
Sbjct: 368 IAAEYVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKS 427

Query: 448 FKTMASHC-GLDL 459
               A +  G+D+
Sbjct: 428 LSLYARNSYGIDM 440


>gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 833

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 37/254 (14%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQT-YALRMYLFLITGIDL 253
           +G++ID     +L++    E K L+  I+ L   D  + S +Q    L   L L      
Sbjct: 456 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLGEVLYEKLNLPKNKSH 515

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I+ + +   LN+L+++  + +L+L         D ++  T    
Sbjct: 516 STDEKSLLKIMDKHPSISLILEYRELNKLSNTYTTPLLRLK------DKDDKIHTTFIQT 569

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P +              ++G  I    G  S     C++   
Sbjct: 570 GTA-TGRLSSHSPNLQNIPVRS-------------SKGLLIRK--GFISSSKEYCLLG-- 611

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
                  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I 
Sbjct: 612 ------VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIA 662

Query: 433 KVMELALGYQGGAK 446
           K +   L Y  G+K
Sbjct: 663 KSINFGLVYGMGSK 676


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 125/324 (38%), Gaps = 98/324 (30%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTP 420
           VRS  + S+ + KL+ +D + IE RVLA +A +   I+AF N  DI+  T  + F    P
Sbjct: 642 VRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNP 701

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            ++V+   R   K +   + Y              G+     SQN+              
Sbjct: 702 -EEVTSSMRRQAKAVNFGIVY--------------GISDYGLSQNLNIPRK--------- 737

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                                A E + + +  + QGV    KD  E    +V E     A
Sbjct: 738 --------------------KAKEFIDR-YLEEFQGV----KDYME---TIVAE-----A 764

Query: 541 RRVANVPRLVMRR------HKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593
           R+   V  L  RR      H  + +I   + R  + S ++G  +  L  A  +L RE   
Sbjct: 765 RQNDYVETLFHRRRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADILKVAMIELDRE--- 821

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
              LTE   QA                   ++L VHDE++ E P+    S+ +L   + +
Sbjct: 822 ---LTERNFQA------------------KLLLQVHDELIFEVPEEEVESLQSLVEEVME 860

Query: 654 NPSWAKGLPLKAEG------YEAK 671
           N + +  +PLKA+       YEAK
Sbjct: 861 N-AVSLSVPLKADSNIGNNWYEAK 883


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G  ++ AD + IE R++A    ++  +KAF   +D++  T +       ++
Sbjct: 4   LRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNYEE 63

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFE------DWE 476
           ++KE+R + K +   L Y    K     A S+ G+++     N    + FE       W 
Sbjct: 64  ITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIKKWH 123

Query: 477 QAESHHL 483
           +   +HL
Sbjct: 124 EETKNHL 130


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           +RS +IA  G   V+AD   +E R+LA ++G D ++ A A  +D+Y    A+ F+
Sbjct: 289 LRSSVIADPGHTFVIADAGQLEPRILAAMSG-DARMVAAAGADDLYAPVAAETFD 342


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S+   ++ + D + IE RVLA ++G+    +AF   +DI+  T AK F+    
Sbjct: 648 IRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGDPHLQEAFKENKDIHTATAAKVFHKDEK 707

Query: 423 KVSKEQRAIGKVMELALGY 441
            +SK++R   K +   + Y
Sbjct: 708 DISKDERRQAKAVNFGIVY 726


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  +V  D + +E R+L       + I  + +G D++    + AF   I++VSK+QR  
Sbjct: 627 DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTA 686

Query: 432 GKVMELALGYQGGAK 446
            K ++  + YQ  A+
Sbjct: 687 SKKIQFGIVYQESAR 701


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  +  AD + IE R+LA ++ E   ++A+   EDI+  T    F    + 
Sbjct: 723 IRKAFLPESGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--ED 780

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           V+ ++R I K +   + Y  G+  F
Sbjct: 781 VNSDERRIAKTINFGVIYGMGSLKF 805


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IAG++  I+AF   +D++  T  + F+    
Sbjct: 637 IRQAFVPSEKGWVIFAADYSQIELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEG 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRHAKAVNFGIVY 715


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN   P D    ++R
Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRR 708


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  +V  D + +E R+L       + I  + +G D++    + AF   I++VSK+QR  
Sbjct: 627 DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTA 686

Query: 432 GKVMELALGYQGGAK 446
            K ++  + YQ  A+
Sbjct: 687 SKKIQFGIVYQESAR 701


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN   P D    ++R
Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRR 708


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 687

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA--KAFNTPID 422
           R  ++AS G   V AD + +E R++A ++G+   +K FA+G D++ T  A  K      +
Sbjct: 216 RDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKKAE 275

Query: 423 KVSKEQRAIGKVMELALGY 441
            +++E+R   K++   + Y
Sbjct: 276 DITEEERRQTKIVVYGVLY 294


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN   P D    ++R
Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRR 708


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IAS G  L+  D + IE R+LA  + +   +KAF   EDI++ T    F       ++ 
Sbjct: 626 FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQ----AQA 681

Query: 428 QRAIGKVMELALGYQGGAK 446
           +R I K +   L Y  GA+
Sbjct: 682 KRPIAKAINFGLIYGMGAR 700


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +    + AD + IE R++A ++ +   ++AF NG+DI+    +  F  P+ +
Sbjct: 689 IRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAE 748

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ + R   K+    + Y  G  VF
Sbjct: 749 ITCDMRRKAKITNFGIIY--GISVF 771


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IAS G  L+  D + IE R+LA  + +   +KAF   EDI++ T    F       ++ 
Sbjct: 626 FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQ----AQA 681

Query: 428 QRAIGKVMELALGYQGGAK 446
           +R I K +   L Y  GA+
Sbjct: 682 KRPIAKAINFGLIYGMGAR 700


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 687

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DG++  T      ++TGR S      QN+P +             L  G  I     
Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 R   + S    L+ +D + IE RVLA I+ ++  I AF +G DI+ +T  + F
Sbjct: 638 ------RKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVF 690


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 139/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q+F E  +++ +  
Sbjct: 375 VAKMKETHAVKSDEEVYGKGAKRAVPEQEVVAEHVARKVHVLYDVKQIFEEELEKNEQ-- 432

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G  +D + +  + E +A   K+++++I +L  
Sbjct: 433 YELFTELELPLARVLADMEV-------KGVTVDTERLRNMGEELAGRLKEMEQEIYELAG 485

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  ++ H  I  + K L   
Sbjct: 486 TEFNINSPKQ---LGVILFENLNLPVLKKTKTGYSTSADVLDKLMDHHAI--IPKILHYR 540

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 541 QLGKLNSTYIE--GLLKVVHDDSSKIHTRFNQVLTQTGRLSSTEPNLQNIPIR------- 591

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ I +  G  +  AD + IE RVLA IA ++  ++
Sbjct: 592 ------LEEGRKIR----------QAFIPSEEGWIMYAADYSQIELRVLAHIAKDEGLVE 635

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 636 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 676


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           +RS +IA  G   V+AD   +E R+LA ++G D ++ A A  +D+Y    A+ F+
Sbjct: 289 LRSSVIADPGHTFVIADAGQLEPRILAAMSG-DTRMVAAAGADDLYAPVAAETFD 342


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 31/163 (19%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   RSEE                         +R   I S+  
Sbjct: 619 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFIPSHEN 654

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIG 432
            ++  +D + IE RVLA I G+    +AF  GEDI+ TT  + F     D V+ E R   
Sbjct: 655 WQIWSSDYSQIELRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQA 714

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           K +   + Y  G   +  +A++ G+  +Q  Q ++    FE++
Sbjct: 715 KAVNFGIVY--GISDY-GLANNTGISRKQAHQFIQ--RYFEEY 752


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DG++  T      ++TGR S      QN+P +             L  G  I     
Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 R   + S    L+ +D + IE RVLA I+ ++  I AF +G DI+ +T  + F
Sbjct: 638 ------RKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVF 690


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DG++  T      ++TGR S      QN+P +             L  G  I     
Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 R   + S    L+ +D + IE RVLA I+ ++  I AF +G DI+ +T  + F
Sbjct: 638 ------RKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVF 690


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C I         AD + IE R++A ++ ++  ++AF  G DI+  T AK ++  ++ 
Sbjct: 681 IRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMMEAFRKGHDIHRATAAKIWHEDMEN 740

Query: 424 VSKEQRAIGKVMELALGY 441
           V+  QR   K     + Y
Sbjct: 741 VTDAQRKKAKQANFGIIY 758


>gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei
           TREU927]
 gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei]
 gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 958

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 18/212 (8%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C+ A +G  LV  D   +E RVLA ++G+   I       DI+ +     F      
Sbjct: 706 IRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRK--TS 763

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-WEQAESHH 482
           V+ E+R++ K +   + Y  G    + +A   G+ ++   Q ++ +S F+  +   +++ 
Sbjct: 764 VTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVE---QALRVSSLFKSCFPTVDAYQ 817

Query: 483 LWMQDQYPEFAVKDKLIG---TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
             + DQ         L G   +  ++  +    +     Q +  + +G A  V + G I+
Sbjct: 818 RRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIA 877

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                 V R V++ H  DV ++L     ++ S
Sbjct: 878 ------VEREVLQPHAPDVRLLLQVHDEIILS 903


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 31/163 (19%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   RSEE                         +R   I S+  
Sbjct: 619 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFIPSHEN 654

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIG 432
            ++  +D + IE RVLA I G+    +AF  GEDI+ TT  + F     D V+ E R   
Sbjct: 655 WQIWSSDYSQIELRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQA 714

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           K +   + Y  G   +  +A++ G+  +Q  Q ++    FE++
Sbjct: 715 KAVNFGIVY--GISDY-GLANNTGISRKQAHQFIQ--RYFEEY 752


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 687

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   
Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIIYAADYSQIELRVLAHIANDKGLVE 687

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I   G  LV AD + IE R+LA ++ E   + A+  G D++  T    F      
Sbjct: 689 IRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALLAAYQEGADVHRLT--AQFLLEKTD 746

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           +S  +R +GK++   + Y  G + F
Sbjct: 747 ISSSERRLGKMINFGVIYGMGPQRF 771


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +  AD + IE R+LA ++G++  I AF    DI+  T A  F  P ++V+   R   K +
Sbjct: 715 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 774

Query: 436 ELALGY 441
              + Y
Sbjct: 775 NFGIVY 780


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +  AD + IE R+LA ++G++  I AF    DI+  T A  F  P ++V+   R   K +
Sbjct: 747 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 806

Query: 436 ELALGY 441
              + Y
Sbjct: 807 NFGIVY 812


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 24/133 (18%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L   +  DG++         ++TGR S      QN+P   R EE           G 
Sbjct: 599 LAGLPTYIKEDGKIHSRF-VQTLTQTGRLSSADPNLQNIPA--RIEE-----------GR 644

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
            I           ++ + A  G +L  AD + IE RVLA IA +   I AF +GEDI+  
Sbjct: 645 RIR----------QAFVPAHEGWQLFGADYSQIELRVLAHIAQDQHMIAAFKSGEDIHEA 694

Query: 412 TYAKAFNTPIDKV 424
           T  + F    D V
Sbjct: 695 TARRVFGLDPDTV 707


>gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 958

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 18/212 (8%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C+ A +G  LV  D   +E RVLA ++G+   I       DI+ +     F      
Sbjct: 706 IRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRK--TS 763

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-WEQAESHH 482
           V+ E+R++ K +   + Y  G    + +A   G+ ++   Q ++ +S F+  +   +++ 
Sbjct: 764 VTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVE---QALRVSSLFKSCFPTVDAYQ 817

Query: 483 LWMQDQYPEFAVKDKLIG---TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
             + DQ         L G   +  ++  +    +     Q +  + +G A  V + G I+
Sbjct: 818 RRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIA 877

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                 V R V++ H  DV ++L     ++ S
Sbjct: 878 ------VEREVLQPHAPDVRLLLQVHDEIILS 903


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            +R   + S+ G ++  +D + +E RVLA I G+    + F NGEDI+ +T  + F+  P
Sbjct: 643 LIRQAFVPSHEGWQIFSSDYSQVELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKP 702

Query: 421 IDKVSKEQRAIGKVMELALGY 441
             ++ +  R   K +   + Y
Sbjct: 703 DQEIDRNMRRRAKAVNFGIVY 723


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 29/153 (18%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350
           L  L + + +DG++  T      ++TGR S      QN+P R E   +I           
Sbjct: 592 LAGLPKFIQADGKIH-TRFVQTLTQTGRLSSADPNLQNIPIRMEEGRKI----------- 639

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         R   + S  G +L  AD + IE RVLA I+G+    +AF  G+DI+
Sbjct: 640 --------------RQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIH 685

Query: 410 VTTYAKAFNTPIDK-VSKEQRAIGKVMELALGY 441
             T  + F    D+ V+ + R   K +   + Y
Sbjct: 686 AATARRVFGLAEDEAVNSDMRRQAKAVNFGIVY 718


>gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1]
 gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1]
 gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W]
          Length = 286

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           R++     +   +++F NGEDI+  T +  +N P+++V+KE+R   K +   L +
Sbjct: 2   RIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAF 56


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D
Sbjct: 639 IRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSED 698

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V++  R   K +   + Y
Sbjct: 699 EVTQAMRRQAKAVNFGIVY 717


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 592 LQKVISKDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     ++    SN   ++ AD + IE RVLA I  ++   +AF N +D++  T  
Sbjct: 638 ----------KAFKPTSNDSVILSADYSQIELRVLAHITQDESMKEAFINEKDVHTATAM 687

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F+   ++V+   R   K +   + Y
Sbjct: 688 KVFDVEANEVNALMRRQAKAVNFGIVY 714


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +  AD + IE R+LA ++G++  I AF    DI+  T A  F  P ++V+   R   K +
Sbjct: 668 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 727

Query: 436 ELALGY 441
              + Y
Sbjct: 728 NFGIVY 733


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IA  G  +  +D + IE R++A ++ +   + AFA GEDI+  T A+ F     +
Sbjct: 696 IREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTPLE 755

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR + KV+   L Y  G   F  +A + GL+
Sbjct: 756 VSSDQRRMAKVINFGLIY--GMSAFG-LARNLGLE 787


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D
Sbjct: 639 IRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSED 698

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V++  R   K +   + Y
Sbjct: 699 EVTQAMRRQAKAVNFGIVY 717


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +RS ++A  G   VVAD   +E R+LA ++G D ++ A A  +D+Y    A+AF 
Sbjct: 293 TMRSSVVADPGHVFVVADAGQLEPRILAAMSG-DRRMMAAAGDDDLYALVGAEAFG 347


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score = 40.8 bits (94), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +RS ++A  G   VVAD   +E R+LA ++G D ++ A A  +D+Y    A+AF 
Sbjct: 293 TMRSSVVADPGHVFVVADAGQLEPRILAAMSG-DRRMMAAAGDDDLYALVGAEAFG 347


>gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12]
 gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12]
          Length = 903

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 36/188 (19%)

Query: 261 LKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    G + TGR
Sbjct: 593 LKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQTGTA-TGR 645

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P                     +  P GL    +R   IAS+ +  L+ 
Sbjct: 646 LSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEYCLLG 681

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+R+I K +   
Sbjct: 682 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGG---DLAKEKRSIAKSINFG 738

Query: 439 LGYQGGAK 446
           L Y  G+K
Sbjct: 739 LVYGMGSK 746


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 105/264 (39%), Gaps = 52/264 (19%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVD 255
           G  +D +++  L E   +   +L+E I +L      I S +Q   L   LF   GI  V 
Sbjct: 504 GIAVDREMLGNLHESFTRRLHELEEKIYELAGEAFNINSPKQLATL---LFEKMGIPPVK 560

Query: 256 MSE-------GTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306
            ++         L+++     I   L +  ++++L S+      +N LSE ++   GR+ 
Sbjct: 561 KTKTGYSTDVSVLEALAPQYEIANVLTQYRMVSKLLST-----YVNALSELINPWTGRIH 615

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            +      + TGR S      QN+P R E   E                         VR
Sbjct: 616 TSFN-QTVANTGRLSSSDPNLQNIPIRTEEGRE-------------------------VR 649

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              + + G   V AD + IE R+ A ++G++  +K+FA  +DI+  T    F +      
Sbjct: 650 KAFVPAPGFCFVAADYSQIELRIAAHLSGDESMLKSFAEEKDIHAQTADAIFGSS----E 705

Query: 426 KEQRAIGKVMELALGYQGGAKVFK 449
              R + K +   + Y  G   FK
Sbjct: 706 PNYRRMAKAVNFGILY--GISAFK 727


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 137/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  K++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELDVVAEHVARKVHVLYDVKQTFIEELKKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 29/150 (19%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L E +  DGR+  T      + TGR S      QN+P         T+T    N G+ I 
Sbjct: 601 LLECIQPDGRIH-TRYLQTLTATGRLSSVDPNLQNIP---------TRT----NEGKQI- 645

Query: 355 DPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     R   + S     + + D + +E RVLA ++G++   +AF +G DI+  T 
Sbjct: 646 ----------RKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTA 695

Query: 414 AKAF--NTPIDKVSKEQRAIGKVMELALGY 441
            K F  ++P D+V+   R   K +   + Y
Sbjct: 696 MKIFHLDSP-DEVTPLMRRHAKAVNFGIVY 724


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 29/150 (19%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L E +  DGR+  T      + TGR S      QN+P         T+T    N G+ I 
Sbjct: 601 LLECIQPDGRIH-TRYLQTLTATGRLSSVDPNLQNIP---------TRT----NEGKQI- 645

Query: 355 DPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     R   + S     + + D + +E RVLA ++G++   +AF +G DI+  T 
Sbjct: 646 ----------RKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTA 695

Query: 414 AKAF--NTPIDKVSKEQRAIGKVMELALGY 441
            K F  ++P D+V+   R   K +   + Y
Sbjct: 696 MKIFHLDSP-DEVTPLMRRHAKAVNFGIVY 724


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D
Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D
Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718


>gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180]
 gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180]
          Length = 897

 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253
           +G++ID     +L++    E   L+  I+ L   D  + S +Q    L   L L      
Sbjct: 520 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLGEVLYEKLELPKNKSH 579

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L ++  + +L+L         D ++  T    
Sbjct: 580 STDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 633

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P                     +  P GL    +R   IAS+
Sbjct: 634 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 668

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +  L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++K++R+I
Sbjct: 669 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSI 725

Query: 432 GKVMELALGYQGGAK 446
            K +   L Y  G+K
Sbjct: 726 AKSINFGLVYGMGSK 740


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G  +  AD + IE R+LA ++ E   ++A+   EDI+  T    F      
Sbjct: 716 IRKAFLPESGYLMAAADYSQIELRILAHLSQEPILLQAYQQNEDIHTVTARLVFEK--SD 773

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448
           ++ ++R I K +   + Y  G+  F
Sbjct: 774 ITSDERRIAKTINFGVIYGMGSLRF 798


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D
Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           LA D VR    A  G   V  D + IE R+LA  + ++  +KAF N EDI+  T    F 
Sbjct: 644 LAKD-VRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALLKAFENDEDIHARTAISIFG 702

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGA 445
           +       + RA+ K +   L Y  G+
Sbjct: 703 S----ADGQNRAVAKSINFGLIYGMGS 725


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D
Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           L+ +D + IE RVLA I+G+   I+AF +G DI+ +T  + FN   P D    ++R
Sbjct: 653 LLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRR 708


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +  DGR+  T      + TGR S      QN+P +       T+  + + +    +
Sbjct: 602 LLDVIQPDGRVH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPS 653

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           DP G    C                D + +E RVLA ++G+    +AF  G DI+  T  
Sbjct: 654 DPDGYIFSC----------------DYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAM 697

Query: 415 KAF--NTPIDKVSKEQRAIGKVMELALGY 441
           K F  ++P DKV+   R   K +   + Y
Sbjct: 698 KIFHLDSP-DKVTPLMRRHAKAVNFGIVY 725


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIA----GEDWKIKAFANGEDIYVTTYAKAFNT 419
           VR+C I   G   V ADL  IE R++A I     G++   + F +G D+Y T   + F  
Sbjct: 39  VRNCFIPRKGFTFVGADLGQIEPRIMAHIMHTKYGDNSMRQIFMDGVDLYTTGAMQTFGL 98

Query: 420 P----IDKV-----SKEQRAIGKVMELALGYQGGAKVF 448
                +D+      + E R + K  +LA+ Y    K F
Sbjct: 99  EEKYCLDEAYDPTGTFEPRKLMKTGQLAVSYDQSPKSF 136


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 29/117 (24%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   R+EE                         +R+  + S   
Sbjct: 627 TQTGRLSSVDPNLQNIPM--RTEE----------------------GRQIRTAFVPSEPN 662

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF----NTPIDKVSK 426
            ++V AD + IE RVLA + G+    +AF NGEDI+  T    F    + P+D + +
Sbjct: 663 WQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDIHAETARAVFGLKDDAPVDALMR 719


>gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
          Length = 877

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 593 LQKVISDDQRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 638

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 SD     +I S       AD + IE RVLA +  ++   +AF +G+DI+  T  
Sbjct: 639 KAFKPTSD---DYVILS-------ADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAM 688

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V+   R   K +   + Y
Sbjct: 689 KVFGVEKDQVNDLMRRQAKAVNFGIVY 715


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  GK ++ AD + IE R+ A +A       AFA G+DI+  T  + F     +
Sbjct: 701 IRDAFVAEPGKLILSADYSQIELRLAAHMADVPALKDAFARGDDIHALTAQEVFG----E 756

Query: 424 VSKEQRAIGKVMELALGY 441
           V+++ RA  K +  ++ Y
Sbjct: 757 VNRDTRARAKTINFSILY 774


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  ++ AD + IE RVLA ++G++   +AF  G DI+  T    F    D
Sbjct: 663 IRKAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSED 722

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 723 RVDARMRRQAKAVNFGIIY 741


>gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 24/147 (16%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+         ++TGR S      QN+P +             L  G  I 
Sbjct: 593 LQKVISDDQRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 638

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 SD     +I S       AD + IE RVLA +  ++   +AF +G+DI+  T  
Sbjct: 639 KAFKPTSD---DYVILS-------ADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAM 688

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441
           K F    D+V+   R   K +   + Y
Sbjct: 689 KVFGVEKDQVNDLMRRQAKAVNFGIVY 715


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +  +   ++++ D + I+ R LA ++G++  I+ F  G DI+  T ++ F  P+D
Sbjct: 624 IRKAFVPGDENHILLSCDYSQIDLRSLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLD 683

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+ + R   K +   + Y
Sbjct: 684 QVTPDLRRKAKAVNFGIVY 702


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 14/129 (10%)

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
           A  R    + PL   S   R+ + A  G+++   D + IE   +A +AG+   +  FA G
Sbjct: 364 ATGRMSISSPPLQQFSGPARAILTADEGQRMWSVDWSQIEPVTMALLAGDSEFLAPFAAG 423

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY-QGGAKVFKTMA----SHCGLDLQ 460
            D+Y          PI + +  +R + KV+ L   Y  G AK+ +T+     S   L  Q
Sbjct: 424 ADLY---------EPIMRAAGIERKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQLRRQ 474

Query: 461 QFSQNVKST 469
            F+   +S+
Sbjct: 475 MFAAMPESS 483


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 331 PRQERSEEILTQTIQALNRGET---------IADPLGLASDCVRSCIIASNGKK-LVVAD 380
           PR  R      Q + A  R  +         I  PLG     +R   I +N    L+ AD
Sbjct: 664 PRTGRVHTSFNQHVTATGRLSSSNPNLQNIPIRTPLGRE---IRKAFIPTNPANWLLSAD 720

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+ A I+G+   I+AF NG DI+  T    F+T  + ++ + R   K  E+  G
Sbjct: 721 YSQIELRIAAEISGDPKLIEAFRNGLDIHAETARVIFDT--EDITADMRR--KAKEVNFG 776

Query: 441 YQGGAKVF 448
              G + F
Sbjct: 777 VLYGIQPF 784


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S+    +  AD + IE RVLA IA ++  I+AF    DI+  T    F+   D
Sbjct: 637 IREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSED 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
           F+P+ LP    S    T      N G  +  P       VR  ++A  G +LVVAD   +
Sbjct: 291 FRPEYLPGGTVSGRWTT------NGGGALQIP-----KVVRRAVVADPGWRLVVADADQM 339

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           E RVLA I+ +   ++   +G D+Y T   +AF+
Sbjct: 340 EPRVLAAISRDPGLMEVAGSGRDLYATLSDRAFS 373


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A  G  +  +D + IE R++A ++ +   + AFA GEDI+  T A+ F     +
Sbjct: 684 IREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTSLE 743

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           VS +QR + KV+   L Y  G   F  +A + GL+
Sbjct: 744 VSSDQRRMAKVINFGLIY--GMSAFG-LARNLGLE 775


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 31/163 (19%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P   RSEE                         +R   + S+  
Sbjct: 619 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFVPSHED 654

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIG 432
            ++  +D + IE RVLA I G+    +AF  GEDI+ TT  + F     D V+ E R   
Sbjct: 655 WQIWSSDYSQIELRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQA 714

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           K +   + Y  G   +  +A++ G+  +Q  Q ++    FE++
Sbjct: 715 KAVNFGIVY--GISDY-GLANNTGISRKQAHQFIQ--RYFEEY 752


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 23/148 (15%)

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            P   P Q R+  + T    A N        L      VR C +A +G+ +V  D    E
Sbjct: 345 HPGINPLQARTARMSTNNPSAQN--------LPAGDWMVRRCFLADSGQLMVSVDYQAQE 396

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A +   I+AF +  D++  T            S   R +GK++  A  +  G 
Sbjct: 397 LRVLAALANDRTMIQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGP 447

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
               T+A+  G+    F +  +  + FE
Sbjct: 448 ---STIAAQAGI---TFPEAKRVIAGFE 469


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            +R   + S+ G ++  +D + +E RVLA I G+    + F NGEDI+ +T  + F+  P
Sbjct: 645 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAP 704

Query: 421 IDKVSKEQRAIGKVMELALGY 441
             ++ +  R   K +   + Y
Sbjct: 705 DAEIDRNMRRRAKAVNFGIVY 725


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDC--VRSCIIASNGKKLVVADLAGIEA 386
           N  R   S  + T+T +  +RG  + +   L  D   +R    AS G  L+VAD   +E 
Sbjct: 468 NKSRVHCSLNLNTETGRLSSRGPNLQNQPALEKDTYQIRKAFEASPGNNLIVADYGQLEL 527

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+LA + G    I+AF  G D +  T    F+    KV
Sbjct: 528 RLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKAKV 565


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
           PLG     +R   +A  GKK +  D + +E R+LA  + +   + AF + +DI++ T   
Sbjct: 667 PLGAK---IRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHDKDIHLQTAIV 723

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
            F    ++ +  +R I K +   L Y  G K
Sbjct: 724 LFG---EEEAAHKRNIAKTVNFGLLYGMGPK 751


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G   V AD + +E RVLA +  E    +AF    DI+  T +  FN     V+ E R  
Sbjct: 626 DGNIFVAADYSQVELRVLAHLCDEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRF 685

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            KV+   L Y  G   F  +AS  G+  Q+
Sbjct: 686 AKVVNFGLLY--GMSSF-GLASRLGIGQQE 712


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            +R   + S+ G ++  +D + +E RVLA I G+    + F NGEDI+ +T  + F+  P
Sbjct: 645 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAP 704

Query: 421 IDKVSKEQRAIGKVMELALGY 441
             ++ +  R   K +   + Y
Sbjct: 705 DAEIDRNMRRRAKAVNFGIVY 725


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  I+AF  G DI+  T    F+   +
Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+   R   K +   + Y
Sbjct: 696 DVTANMRRQAKAVNFGIVY 714


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            +R   + S+ G ++  +D + +E RVLA I G+    + F NGEDI+ +T  + F+  P
Sbjct: 645 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAP 704

Query: 421 IDKVSKEQRAIGKVMELALGY 441
             ++ +  R   K +   + Y
Sbjct: 705 DAEIDRNMRRRAKAVNFGIVY 725


>gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 887

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 37/254 (14%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ-TYALRMYLFLITGIDL 253
           +G++ID     +L++    E K L+  I+ L   D  + S +Q +  L   L L      
Sbjct: 510 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLSGVLYEKLNLPKNKSH 569

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSG-SAILKLNTLSEAVSSDGRLRGTLQFY 312
               +  LK +  H +I  + +   LN+L+++  + +L+L         D ++  T    
Sbjct: 570 STDEKNLLKIMDKHPSIPLILEYRELNKLSNTYITPLLRLK------DKDDKIHTTFIQT 623

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR S      QN+P +              ++G  I    G  S     C++   
Sbjct: 624 GTA-TGRLSSHSPNLQNIPVRS-------------SKGLLIRK--GFISSSKEYCLLG-- 665

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
                  D + IE R+LA  + +   ++AF  G DI++ T    F    +  +KE+R+I 
Sbjct: 666 ------VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFG---ENSAKEKRSIA 716

Query: 433 KVMELALGYQGGAK 446
           K +   L Y  G+K
Sbjct: 717 KSINFGLVYGMGSK 730


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 39/78 (50%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +   G   V AD + +E R+LA  + +   I+AF N EDI+  T ++ F    + 
Sbjct: 653 IRKAFVPRPGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHTRTASEVFQLFPEM 712

Query: 424 VSKEQRAIGKVMELALGY 441
           ++++ R   K +   + Y
Sbjct: 713 ITEDVRRQAKAINFGIVY 730


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%)

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL +  IT+L    +L               L + +  DG++  T      ++TGR S  
Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYMQDLTQTGRLSSV 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +             L +G  I           ++ + ++    L+ +D + 
Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTKDAVLLSSDYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           IE RVLA I+G++  I AF  G DI+ +T  + F    P D    ++R
Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706


>gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 228

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 32/145 (22%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F  TG  +VD  E TL+++        +A+ L++      G  I ++ +  +AV  DGR+
Sbjct: 106 FTETGQAVVD--EKTLETVTDIPEAQLIAEYLMV------GKRIAQVQSSLDAVEDDGRV 157

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            G +   GA  TGR                    +T +   + +   +  P G   +C R
Sbjct: 158 HGQVNAIGAV-TGR--------------------MTHSSPNMAQTPAVGVPYGY--EC-R 193

Query: 366 SCIIASNGKKLVVADLAGIEARVLA 390
           +C I  +G KLV  D +G+E R+LA
Sbjct: 194 ACWIVPDGHKLVGVDASGLELRMLA 218


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  I+AF  G DI+  T    F+   +
Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+   R   K +   + Y
Sbjct: 696 DVTANMRRQAKAVNFGIVY 714


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA ++  I+AF    DI+  T  + F+   +
Sbjct: 637 IRQAFVPSEPGWAIFAADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNAN 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRHAKAVNFGIVY 715


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +   GK L   D +G E R++AW +G++   + F  G D++  T +        +
Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAE 602

Query: 424 VSKEQRAIGKVMELALGYQG 443
           + K++R   K     + Y G
Sbjct: 603 IVKKERTDAKAGNFGISYGG 622


>gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis]
          Length = 1661

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
            P G  +  +R   +AS G  L+ AD + +E R+LA ++ +   IK      D++    AK
Sbjct: 1400 PNGNNTLHIREIFVASEGCTLLSADFSQLELRILAHLSNDSKLIKILKEKIDVFTEIAAK 1459

Query: 416  AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ---QFSQNVK 467
              +     V++ QR   K +  AL Y       K++A+  G D +   QF  N K
Sbjct: 1460 MNSIDRSAVNEIQRNRAKQICYALIY---GMCPKSLAAELGTDEEQAIQFYNNFK 1511


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  +++H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF---NTP 420
           +R   +A  GKKL+  D + IE R+LA    +   ++AF   +DI++ T    F   + P
Sbjct: 667 IREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDKDIHMQTAIALFGEEDAP 726

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAK 446
           +      +R + K +   L Y  G K
Sbjct: 727 L------KRNVAKTVNFGLLYGMGQK 746


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 101/282 (35%), Gaps = 88/282 (31%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S    ++  AD + IE RVLA IA ++  I AF +G DI+  T    F+   +
Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+   R   K +   + Y              G+     SQN+  T             
Sbjct: 698 EVTPNMRRQAKAVNFGIVY--------------GISDYGLSQNLNITRK----------- 732

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                              A E +K+ +     GV Q  KD       +VQE     A++
Sbjct: 733 ------------------EAAEFIKRYFEI-FPGVKQYMKD-------IVQE-----AKQ 761

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI- 601
              V  L+ RR                         YL   TS+    R++  +   N  
Sbjct: 762 KGYVTTLLHRRR------------------------YLPDITSRNFNLRSFAERTAMNTP 797

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
           +Q  + DI+ + M + +K          ++L VHDE++ E P
Sbjct: 798 IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAP 839


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  +++ +  
Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 471

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   
Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 579

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  +   GK L   D +G E R++AW +G++   + F  G D++  T +        +
Sbjct: 537 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAE 596

Query: 424 VSKEQRAIGKVMELALGYQG 443
           + K++R   K     + Y G
Sbjct: 597 IVKKERTDAKAGNFGISYGG 616


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%)

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL +  IT+L    +L               L + +  DG++  T      ++TGR S  
Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYMQDLTQTGRLSSV 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +             L +G  I           ++ + ++    L+ +D + 
Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTKDAVLLSSDYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           IE RVLA I+G++  I AF  G DI+ +T  + F    P D    ++R
Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 101/282 (35%), Gaps = 88/282 (31%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S    ++  AD + IE RVLA IA ++  I AF +G DI+  T    F+   +
Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+   R   K +   + Y              G+     SQN+  T             
Sbjct: 698 EVTPNMRRQAKAVNFGIVY--------------GISDYGLSQNLNITRK----------- 732

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                              A E +K+ +     GV Q  KD       +VQE     A++
Sbjct: 733 ------------------EAAEFIKRYFEI-FPGVKQYMKD-------IVQE-----AKQ 761

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI- 601
              V  L+ RR                         YL   TS+    R++  +   N  
Sbjct: 762 KGYVTTLLHRRR------------------------YLPDITSRNFNLRSFAERTAMNTP 797

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
           +Q  + DI+ + M + +K          ++L VHDE++ E P
Sbjct: 798 IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAP 839


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%)

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
            P   P Q R+  + T    A N        L      VR C +A  G+ +V  D    E
Sbjct: 345 HPGINPLQARTARMSTNNPSAQN--------LPAGDWMVRRCFLADPGQLMVSVDYQAQE 396

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A +   I+AF +  D++  T            S   R +GK++  A  +  G 
Sbjct: 397 LRVLAALANDRTMIQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGP 447

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
               T+A+  G+    F +  +  + FE
Sbjct: 448 ---STIAAQAGI---TFPEAKRVIAGFE 469


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P ++  +                          +R   + S+ G
Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431
            ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F  ++P D+V+ + R  
Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709

Query: 432 GKVMELALGY 441
            K     + Y
Sbjct: 710 AKATNFGIVY 719


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 24/123 (19%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + + SDG++  T      ++TGR S      QN+P +             L +G  I 
Sbjct: 594 LQDYIMSDGKIH-TRYIQDLTQTGRLSSSDPNLQNIPVR-------------LEQGRLIR 639

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     ++ + +S    L+ +D + IE RVLA I+G++  I AF    DI+ +T  
Sbjct: 640 ----------KAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAM 689

Query: 415 KAF 417
           + F
Sbjct: 690 RVF 692


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P ++  +                          +R   + S+ G
Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431
            ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F  ++P D+V+ + R  
Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709

Query: 432 GKVMELALGY 441
            K     + Y
Sbjct: 710 AKATNFGIVY 719


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P ++  +                          +R   + S+ G
Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431
            ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F  ++P D+V+ + R  
Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709

Query: 432 GKVMELALGY 441
            K     + Y
Sbjct: 710 AKATNFGIVY 719


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%)

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL +  IT+L    +L               L + +  DG++  T      ++TGR S  
Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYMQDLTQTGRLSSV 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +             L +G  I           ++ + ++    L+ +D + 
Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTKDAVLLSSDYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           IE RVLA I+G++  I AF  G DI+ +T  + F    P D    ++R
Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  D++  T    F+   D
Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQD 699

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 700 EVTPAMRRQAKAVNFGIVY 718


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  +++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P ++  +                          +R   + S+ G
Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431
            ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F  ++P D+V+ + R  
Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709

Query: 432 GKVMELALGY 441
            K     + Y
Sbjct: 710 AKATNFGIVY 719


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P ++  +                          +R   + S+ G
Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431
            ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F  ++P D+V+ + R  
Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709

Query: 432 GKVMELALGY 441
            K     + Y
Sbjct: 710 AKATNFGIVY 719


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           +R   +    G KL  +D + IE RVLA I+G++   +AF  G+DI+ +T  + F
Sbjct: 81  IRQAFVPQQAGWKLFASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVF 135


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  +++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P ++  +                          +R   + S+ G
Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431
            ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F  ++P D+V+ + R  
Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709

Query: 432 GKVMELALGY 441
            K     + Y
Sbjct: 710 AKATNFGIVY 719


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%)

Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170
           + KM+E  A+ +    + KG+  + P     A HV           Q F E  +++ +  
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 485

Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227
            ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  
Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280
           T+  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   
Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L    S  ++   L + V  D     T      ++TGR S      QN+P +       
Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++
Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AF +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA I+ +   I+AF N  DI+  T    F+   D
Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAED 699

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%)

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL +  IT+L    +L               L + +  DG++  T      ++TGR S  
Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYVQDLTQTGRLSSV 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +             L +G  I           ++ + ++    L+ +D + 
Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTEDAVLLSSDYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           IE RVLA I+G++  I AF  G DI+ +T  + F    P D    ++R
Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  ++ AD + IE RVLA I+G++   +AF +  DI+  T    F    D
Sbjct: 650 IRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGVSAD 709

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 710 QVDSNMRRSAKAVNFGIVY 728


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I  +   +L+ AD + IE R+LA ++ +    +AF  G DI+    +  F  P D
Sbjct: 653 IRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFREGADIHTAVASDIFRVPHD 712

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V  + R   K +   + Y
Sbjct: 713 QVDSDMRRTAKAVNFGVIY 731


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 35/58 (60%)

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +E R++A ++G++  I+AF +G D +    +  +  P+++++ +QR+  K M   L Y
Sbjct: 1   MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 58


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 676 FKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           ++ I    G +L+  D + IE RVLA  +G+    +AF +G+DI+    A+ F      V
Sbjct: 694 KAFIPGEPGWELLCCDYSQIELRVLAHFSGDAALQEAFQSGKDIHTAVAAEVFEVDEANV 753

Query: 425 SKEQRAIGKVMELALGY 441
             + R + K +   + Y
Sbjct: 754 DSDMRRVAKAVNFGVIY 770


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%)

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL +  IT+L    +L               L + +  DG++  T      ++TGR S  
Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYVQDLTQTGRLSSV 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +             L +G  I           ++ + ++    L+ +D + 
Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTEDAVLLSSDYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           IE RVLA I+G++  I AF  G DI+ +T  + F    P D    ++R
Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASD--CVRSCIIASNGKKLVVADLAGIEARVL 389
           R   S  I T+T +  +R   + +   L  D   +R   IA  G KL+VAD   +E RVL
Sbjct: 558 RIHTSININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVL 617

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           A +      I AF  G D +  T    F
Sbjct: 618 AHMTKCKAMIDAFLKGGDFHSRTVITMF 645


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 335 RSEEILTQTIQALNRGETIADP-------LGLASDCVRSCII-ASNGKKLVVADLAGIEA 386
           R      QTI A  R  + ADP          A   +R+  I     + L+  D + +E 
Sbjct: 739 RIHTTFEQTIAATGRLSS-ADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 797

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           R++A  + +   I+AF +G D +    +  +  P+++VS +QR+  K M   L Y
Sbjct: 798 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAY 852


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASD--CVRSCIIASNGKKLVVADLAGIEARVL 389
           R   S  I T+T +  +R   + +   L  D   +R   IA  G KL+VAD   +E RVL
Sbjct: 558 RIHTSININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVL 617

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           A +      I AF  G D +  T    F
Sbjct: 618 AHMTKCKAMIDAFLKGGDFHSRTVITMF 645


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KL+ AD + IE RVLA  +G+    +AFA+  DI+    ++ +      V+ E R   
Sbjct: 728 GWKLMAADYSQIELRVLAHFSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSA 787

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 788 KAINFGVIY 796


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%)

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL +  IT+L    +L               L + +  DG++  T      ++TGR S  
Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYVQDLTQTGRLSSV 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +             L +G  I           ++ + ++    L+ +D + 
Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTEDAVLLSSDYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           IE RVLA I+G++  I AF  G DI+ +T  + F    P D    ++R
Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706


>gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
          Length = 887

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 23/145 (15%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDK 423
           R+   +  G K+  +D + +E RVLA + G+    + F +G+DI+ +T  + F+  P +K
Sbjct: 648 RAFKPSQPGWKIFSSDYSQVELRVLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEK 707

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+   R   K +   + Y              G+     SQN+  T      +QA   H 
Sbjct: 708 VTPNMRRQAKAVNFGIVY--------------GISDYGLSQNIHVTR-----KQA---HE 745

Query: 484 WMQDQYPEFAVKDKLIGTACELVKK 508
           ++Q  + EF    + I    +L KK
Sbjct: 746 FIQSYFKEFPGVQEYIENIVKLAKK 770


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ +    G  L+ AD + IE R+LA ++ +   I +F   EDI+  T A+ F    + V
Sbjct: 637 RAFVPGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDV 696

Query: 425 SKEQRAIGKVMELALGY 441
           + E R   K +   + Y
Sbjct: 697 TPELRDRAKAVNFGIVY 713


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 29/150 (19%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +  DGR+    Q    + TGR S      QN+P +             L  G+ I 
Sbjct: 600 LLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIPVR-------------LEEGKKI- 644

Query: 355 DPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     R   + SN    + + D + +E RVLA ++G++   +AF  G DI+  T 
Sbjct: 645 ----------RKAFVPSNSDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTA 694

Query: 414 AKAF--NTPIDKVSKEQRAIGKVMELALGY 441
            K F  ++P ++V+   R   K +   + Y
Sbjct: 695 MKIFHLDSP-NEVTPNMRRHAKAVNFGIVY 723


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S  G  +  AD + IE RVLA IA +   I+AF +  DI+  T    F    D
Sbjct: 637 IRQAFIPSQEGWVMYAADYSQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKD 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTANMRRQAKAVNFGIVY 715


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 190 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 247

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 248 KAVNFGIVY 256


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 314 ASRTGRWSGCVFQP--QNLPRQERSEEILTQTIQALNRGETIADP----LGLASDCVRSC 367
           + R G+W         +N+  Q R    + Q++QA     ++  P    L  +   +R  
Sbjct: 336 SKRAGKWRSAYADNFLENVDAQGRIHPNV-QSMQARTFRMSVTQPAVQTLPSSDKMIRRA 394

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           ++A  G+ +V  D   +E RVLA +A       A A GED++  T    F    D  + +
Sbjct: 395 LLADPGEVMVSVDFQAVELRVLAALADVKRMKAAIAAGEDLHSFTARLVFG---DGFTDK 451

Query: 428 QRAIGKVMELALGYQGGA 445
            R + K +     Y GGA
Sbjct: 452 DRKVSKGIAFGKVYGGGA 469


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei]
          Length = 958

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 18/212 (8%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R C+   +G  LV  D   +E RVLA ++G+   I       DI+ +     F      
Sbjct: 706 IRRCLGVPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRSIAEIIFRK--TS 763

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-WEQAESHH 482
           V+ E+R++ K +   + Y  G    + +A   G+ ++   Q ++ +S F+  +   +++ 
Sbjct: 764 VTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVE---QALRVSSLFKSCFPTVDAYQ 817

Query: 483 LWMQDQYPEFAVKDKLIG---TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
             + DQ         L G   +  ++  +    +     Q +  + +G A  V + G I+
Sbjct: 818 RRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIA 877

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                 V R V++ H  DV ++L     ++ S
Sbjct: 878 ------VEREVLQPHAPDVRLLLQVHDEIILS 903


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  ++ AD + IE RVLA I+ ++   +AF +  DI+  T +  F  P +
Sbjct: 644 IRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVPAE 703

Query: 423 KVSKEQRAIGKVMELALGY 441
            V  + R   K +   + Y
Sbjct: 704 AVDSDMRRSAKAVNFGIVY 722


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   ++A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort]
 gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort]
          Length = 1067

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 34/62 (54%)

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE +++     +   +++F  GEDI+ +T +  +N P++ ++ E+R   K +   +
Sbjct: 775 DFSAIEMKIIGLYTKDPEMLESFLKGEDIHKSTASIVYNKPVEDITAEERQNTKKVNFGI 834

Query: 440 GY 441
            Y
Sbjct: 835 AY 836


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S  G K++ AD + IE RVLA IA ++  I AF    D++  T    F+   +
Sbjct: 635 IRKAFIPSEEGWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEE 694

Query: 423 KVSKEQRAIGKVMELALGY 441
            V+   R   K +   + Y
Sbjct: 695 DVTSMMRRSAKAVNFGIVY 713


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 339 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 398

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 399 EVTPNMRRQAKAVNFGIPY 417


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 710 KAVNFGIVY 718


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 696 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAEDVTANDRRNA 753

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 754 KAVNFGIVY 762


>gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424]
 gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424]
          Length = 873

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 34/207 (16%)

Query: 335 RSEEILTQT--IQALNRG-ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R E+ LTQT  + ++N   + I   +       ++ I AS+ + ++  D + IE RVLA 
Sbjct: 602 RYEQTLTQTGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASDDRVILSIDYSQIELRVLAH 661

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +   I AF +  DI+  T ++     +D+V+   R   K +   + Y  G   F  +
Sbjct: 662 MAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTPTMRREAKAVNFGIVY--GISDF-GL 718

Query: 452 ASHCGLDLQQFSQNV-KSTSTFE-------DWEQAESHHLWMQDQY------PEFAVKDK 497
           +++ G+  ++  + + K   TF        D  +    H +++  Y      PE   K+K
Sbjct: 719 SNNLGITRKRAKEFIDKYLETFSGVNKYMTDIVEFAKEHGYVETLYNRRRALPEINAKNK 778

Query: 498 LI--------------GTACELVKKAW 510
           ++              GTA +++K A 
Sbjct: 779 IVASLNARLAMNTPIQGTAADIIKLAM 805


>gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
 gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
          Length = 551

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +R  ++A  G +LVVAD + +E RVLA I+ +   ++   N  D+Y     KAF+
Sbjct: 313 VIRRAVVADPGWRLVVADASQLEPRVLAAISRDPGLMEVAGNAADLYKAVSDKAFS 368


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432
           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F   IDK   V+   R   
Sbjct: 578 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 635

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 636 KAVNFGIVY 644


>gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054]
          Length = 562

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R  ++A  G  LVVAD A +E RVLA ++G D  +   A G D+Y    A AF+     
Sbjct: 324 LRRAVVADPGWLLVVADAAQLEPRVLAALSG-DAGLARTAAGGDLYAALAASAFHG---- 378

Query: 424 VSKEQRAIGKVMELALGYQGGA 445
             +EQ  +G ++    G  GG 
Sbjct: 379 -DREQAKLG-LLGAMYGQTGGG 398


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 335 RSEEILTQTIQALNRGETIADP-------LGLASDCVRSCII-ASNGKKLVVADLAGIEA 386
           R      QTI A  R  + ADP          A   +R+  I     + L+  D + +E 
Sbjct: 749 RIHTTFEQTIAATGRLSS-ADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           R++A  + +   I+AF +G D +    +  +  P+++V+ +QR+  K M   L Y
Sbjct: 808 RIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   + A
Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
           +R   +A  GKKL+VAD + +E R+LA I      I+AF  G D +  T    ++ 
Sbjct: 584 IRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDN 639


>gi|170044626|ref|XP_001849942.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167867696|gb|EDS31079.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 503

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           +C L+ +   +  Q      + L+ G+ C   E          NVPRLV   HK  VH +
Sbjct: 141 SCRLLDRTLNSVVQSCFFSKESLSSGYICRWLEN---------NVPRLVPPIHKYCVHAL 191

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
             S R ++  ++K +   + + ++    E +YG +L   I++  S +    G    T N 
Sbjct: 192 STSHRTIIDKNMKNNSDTVVSISAINAGESSYGLELQTPILEKASPNFAANGATGTTSNP 251

Query: 621 GYDIVLTVHDEIVSETPDTP 640
           G  +     + ++ + P  P
Sbjct: 252 GKPLTQAERERMIIQQPLLP 271


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + + +DG++  T      ++TGR S      QN+P +             L +G    
Sbjct: 595 LQDYILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 637

Query: 355 DPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R     S+   +++ +D + IE RVLA I+G++  I AF  G DI+ +T 
Sbjct: 638 --------LIRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTA 689

Query: 414 AKAFNTPIDK---VSKEQRAIGKVMELALGY 441
            + F   IDK   V+   R   K +   + Y
Sbjct: 690 MRVFG--IDKAADVTANDRRNAKAVNFGIVY 718


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +R  ++A  G  LVVAD A +E RVLA I+ +   ++  A  +D+Y +   +AF+
Sbjct: 315 VIRRAVVADPGHCLVVADAAQLEPRVLAAISRDPGLMEVAARADDLYQSVSERAFS 370


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429
           L+ +D + IE RVLA I+G++  I+AF +G DI+ +T  + F    P D    ++R
Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRR 708


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           ++ +    G KL  +D + IE RVLA I+G++   +AF  G+DI+ +T    F
Sbjct: 83  QAFVPQQEGWKLFASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVF 135


>gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
 gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
          Length = 931

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S+   +++ AD + IE RVLA I G+     AF NGEDI+  T  + F    D
Sbjct: 690 IRKAFVPSHSDWQILSADYSQIELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDD 749

Query: 423 K-VSKEQRAIGKVMELALGY 441
           + V    R   K +   + Y
Sbjct: 750 EPVEGNVRRQAKAVNFGIVY 769


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   + A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            VR C +A  G+ +   D    E RVLA ++G+   ++AF    D++  T   A    +D
Sbjct: 374 MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQVTADAA---GVD 430

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
                 R IGK+    + Y GGA    T A
Sbjct: 431 ------RKIGKMANFLVCYGGGAGKLATNA 454


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   + A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 637 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   + A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 53/308 (17%)

Query: 147 CTRANHV--QAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDL 203
             R  HV     Q F E  K++ +   ELF  L +PL+    D+ +       +G ++D 
Sbjct: 462 VARKVHVLYDVKQTFLEELKKNEQ--YELFTELELPLARVLADMEV-------KGVKVDT 512

Query: 204 DLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV------- 254
           D +  + E +A   K+++++I KL  T+  I S +Q   L + LF    + ++       
Sbjct: 513 DRLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQ---LGVILFENLNLPVIKKTKTGY 569

Query: 255 DMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
             S   L  ++  H  I  +     L +L S+      +  L + V  D     T     
Sbjct: 570 STSADVLDKLMDRHEIIPNILHYRQLGKLNST-----YIEGLLKVVHEDSSKIHTRFNQV 624

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            ++TGR S      QN+P +             L  G  I           ++ + +  G
Sbjct: 625 LTQTGRLSSTDPNLQNIPIR-------------LEEGRKIR----------QAFVPSEEG 661

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K
Sbjct: 662 WIMYAADYSQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAK 721

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 722 AVNFGIVY 729


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   + A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 637 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   + A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228
           ELF  L +PL+    D+ +       +G ++D + +  + E +A   K+++++I KL  T
Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281
           +  I S +Q   L + LF    + ++         S   L  ++ H  I  +   L   +
Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L    S  ++   L + V  D     T      ++TGR S      QN+P +        
Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                L  G  I           ++ + +  G  +  AD + IE RVLA IA +   + A
Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           F +  DI+  T    F    D+V+   R   K +   + Y
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421
            VR C +A  G+ +   D    E RVLA ++G+   ++AF    D++ VT  A   +   
Sbjct: 374 MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQVTADAAGVD--- 430

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                  R IGK+    + Y GGA    T A 
Sbjct: 431 -------RKIGKMANFLVCYGGGAGKLATNAG 455


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421
            VR C +A  G+ +V  D    E RVLA +A +   I+AF    D++ VT  A   +   
Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
                  R +GK+      Y GGA    T A
Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNA 454


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421
            VR C +A  G+ +V  D    E RVLA +A +   I+AF    D++ VT  A   +   
Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                  R +GK+      Y GGA    T A 
Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNAG 455


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421
            VR C +A  G+ +V  D    E RVLA +A +   I+AF    D++ VT  A   +   
Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
                  R +GK+      Y GGA    T A
Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNA 454


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R+LA  + ++   ++F+  +D++  T ++ F  P+ +V+K+ R   K +
Sbjct: 643 LLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAV 702

Query: 436 ELALGY 441
              L Y
Sbjct: 703 NFGLIY 708


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R+LA  + ++   ++F+  +D++  T ++ F  P+ +V+K+ R   K +
Sbjct: 643 LLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAV 702

Query: 436 ELALGY 441
              L Y
Sbjct: 703 NFGLIY 708


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421
            VR C +A  G+ +   D    E RVLA ++G+   ++AF    D++ VT  A   +   
Sbjct: 374 MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLRAFKEESDLHQVTADAAGVD--- 430

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                  R IGK+    + Y GGA    T A 
Sbjct: 431 -------RKIGKMANFLVCYGGGAGKLATNAG 455


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421
            VR C +A  G+ +V  D    E RVLA +A +   I+AF    D++ VT  A   +   
Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
                  R +GK+      Y GGA    T A
Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNA 454


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN--TPIDKVSKEQRAIGK 433
           L  AD + IE RVLA + G++  ++AF  G DI+  T    FN   P D+V+   R   K
Sbjct: 648 LFAADYSQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENP-DEVTSLMRRTAK 706

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 707 AVNFGIVY 714


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 710

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729


>gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 570

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           +R  ++A  G KLVVAD A +E R+L  +A +D ++ A   G+D+Y 
Sbjct: 322 LRGAVVADPGWKLVVADAAQLEPRILTGLA-QDQRMAAAGRGQDLYT 367


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 638 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 636 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 695

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 696 EVTPNMRRQAKAVNFGIVY 714


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 638 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 710

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S+    +  AD + IE RVLA IA ++  I AF +  DI+  T    F+   D
Sbjct: 635 IRQAFVPSSDDWVIFAADYSQIELRVLAHIANDENLIAAFHHDLDIHTKTAMDIFHVKED 694

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 695 EVTAHMRRQAKAVNFGIVY 713


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 638 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 636 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 695

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 696 EVTPNMRRQAKAVNFGIVY 714


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 637 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTPNMRRQAKAVNFGIVY 715


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK-AFNTPID 422
           VRS  +A  G  LV AD + +E RVLA ++ ++   K F NG D + T   +   NT ID
Sbjct: 835 VRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRNGGDFFQTVTDRWNANTSID 894

Query: 423 KVSKEQRAIGKVMELALGYQGGA 445
                Q+   K +  A+ Y  GA
Sbjct: 895 VPLDRQKV--KQLCYAIIYGMGA 915


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + SN    L  AD + IE RVLA ++ +   ++AF  G D++  T    F+   D
Sbjct: 635 IRQAFVPSNENWILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSED 694

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 695 EVDSNMRRAAKAVNFGIVY 713


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S +G  ++ AD + IE R+LA I+ ++  I AF  G DI+  T    F    +
Sbjct: 642 IREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEE 701

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 702 EVTSLMRRQAKAVNFGIVY 720


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 637 IRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKD 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 636 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 695

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 696 EVTPNMRRQAKAVNFGIVY 714


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-I 421
           VR   I  +   +++ AD + IE R++A I+ ++  + AF+ G DI+  T AK +    +
Sbjct: 690 VRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMDAFSKGLDIHTATAAKVYGVANL 749

Query: 422 DKVSKEQRAIGKVMELALGY 441
           + V+ +QR   K +   + Y
Sbjct: 750 EDVTSDQRRNAKAVNFGIIY 769


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 637 IRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKD 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 644 IRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKD 703

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 704 EVTSNMRRQAKAVNFGIVY 722


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA ++  I AF +  DI+  T    F+   D+V+   R   K +   
Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFG 713

Query: 439 LGY 441
           + Y
Sbjct: 714 IVY 716


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTANMRRQAKAVNFGIVY 716


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTANMRRQAKAVNFGIVY 716


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEE 695

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 696 EVTANMRRQAKAVNFGIVY 714


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 335 RSEEILTQTIQALNRGETIADP-------LGLASDCVRSCII-ASNGKKLVVADLAGIEA 386
           R      QTI A  R  + ADP          A   +R+  I     + L+  D + +E 
Sbjct: 749 RIHTTFEQTIAATGRLSS-ADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           R++A  + +   I+AF +G D +    +  +  P+++V+ +QR+  K M   L Y
Sbjct: 808 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 644 IRQAFIPSTEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGED 703

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 704 EVTSNMRRQAKAVNFGIVY 722


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKD 710

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 637 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKD 696

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTP 420
           +R   + S+ G K+  +D + IE RVL  ++ +    +AF  G+DI+ +T  + F  ++P
Sbjct: 645 IRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSP 704

Query: 421 IDKVSKEQRAIGKVMELALGY 441
            ++VS E R   K +   + Y
Sbjct: 705 -EEVSSEMRRRAKAVNFGIVY 724


>gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 563

 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+ + A  G KL+VAD + +E RVL  +A +D K+   A  +D+Y    A+ F    D+
Sbjct: 322 IRAAVHADPGHKLIVADASQLEPRVLVALA-QDTKMAEAARDKDLYAGIAAQGFGG--DR 378

Query: 424 VSKEQRAIGKVMELALGYQG 443
              +   +G V     G  G
Sbjct: 379 AKAKIALLGAVYGATTGESG 398


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
          Length = 877

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 27/142 (19%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360
           DGR+  T      + TGR S      QN+P R E  ++I         +    + P G  
Sbjct: 611 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPARTEEGKQI--------RKAFVPSSPDGYI 661

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-T 419
             C                D + IE RVLA ++ +    +AF  G DI+  T  K F+ +
Sbjct: 662 YSC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLS 705

Query: 420 PIDKVSKEQRAIGKVMELALGY 441
            +D+V+  QR   K +   + Y
Sbjct: 706 SVDEVTSLQRRRAKAVNFGIVY 727


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T      + TGR S      QN+P +       T+  + + +    + P G   
Sbjct: 609 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 660

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            C                D + IE RVLA ++ +    +AF  G DI+  T  K F+ + 
Sbjct: 661 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 704

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           +D+V+  QR   K +   + Y
Sbjct: 705 VDEVTSLQRRRAKAVNFGIVY 725


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T      + TGR S      QN+P +       T+  + + +    + P G   
Sbjct: 609 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 660

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            C                D + IE RVLA ++ +    +AF  G DI+  T  K F+ + 
Sbjct: 661 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 704

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           +D+V+  QR   K +   + Y
Sbjct: 705 VDEVTSLQRRRAKAVNFGIVY 725


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    ++  AD + IE RVLA I+G+   I+AF    DI+  T    F+   +
Sbjct: 636 IRQAFVPSEKDWVIFSADYSQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKE 695

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 696 EVTSNMRRQAKAVNFGIVY 714


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           +R   IA  GK L+VAD   +E R+LA ++G    ++AF  G D +  T
Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT 570


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   ++AF +  DI+  T    F    D
Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKD 710

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
          Length = 877

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 542

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 30/208 (14%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTPID 422
           RS I A  G KL   D    E  ++A ++G++   + +A G+  D++  T+    N    
Sbjct: 305 RSIISARTGAKLCYVDFDQFEVGIMAALSGDEELKRLYAAGDMYDLFANTHLGLVN---- 360

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K + L+  Y    K     A   G++ Q+  +  +    +EDW+++    
Sbjct: 361 -----NRKAAKQLFLSYAYGMSRKALIDAAYSLGVERQKAKEAFRLFQRYEDWKRS---- 411

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           +W + Q           G    ++   +R   +G L   K+     + VVQ   S+  +R
Sbjct: 412 IWAEFQGT---------GRVATVLGNHYRRIGKGQLS-GKEQRSAVSQVVQGTASLIFKR 461

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 L+      DV +VLP    L++
Sbjct: 462 A-----LLAVASIDDVKVVLPMHDALLF 484


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
           +R   IA  GK L+VAD   +E R+LA ++G    ++AF  G D +  T
Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT 570


>gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
 gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
          Length = 568

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R  + A  G KL+VAD + +E RVL  +A +D K+   A  +D+Y    A+ F    D+
Sbjct: 327 IRGAVHADPGHKLIVADASQLEPRVLVALA-QDSKMAEAARDKDLYAGIAAQGFGG--DR 383

Query: 424 VSKEQRAIGKVMELALGYQG 443
              +   +G +     G  G
Sbjct: 384 AKAKVALLGAIYGATTGESG 403


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708

Query: 435 MELALGY 441
           +   + Y
Sbjct: 709 VNFGVVY 715


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T      + TGR S      QN+P +       T+  + + +    + P G   
Sbjct: 608 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 659

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            C                D + IE RVLA ++ +    +AF  G DI+  T  K F+ + 
Sbjct: 660 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 703

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           +D+V+  QR   K +   + Y
Sbjct: 704 VDEVTSLQRRRAKAVNFGIVY 724


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 642 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 701

Query: 435 MELALGY 441
           +   + Y
Sbjct: 702 VNFGVVY 708


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   R   K 
Sbjct: 642 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 701

Query: 435 MELALGY 441
           +   + Y
Sbjct: 702 VNFGVVY 708


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T      + TGR S      QN+P +       T+  + + +    + P G   
Sbjct: 608 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 659

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420
            C                D + IE RVLA ++ +    +AF  G DI+  T  K F+ + 
Sbjct: 660 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 703

Query: 421 IDKVSKEQRAIGKVMELALGY 441
           +D+V+  QR   K +   + Y
Sbjct: 704 VDEVTSLQRRRAKAVNFGIVY 724


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTATMRRQAKAVNFGIVY 716


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTATMRRQAKAVNFGIVY 716


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTATMRRQAKAVNFGIVY 716


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTATMRRQAKAVNFGIVY 716


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTATMRRQAKAVNFGIVY 716


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna (Open Form)
          Length = 580

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIFHVSEE 697

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 698 EVTATMRRQAKAVNFGIVY 716


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score = 37.7 bits (86), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418


>gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
 gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
          Length = 879

 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 23/127 (18%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P +             +  G+ I           ++ + AS+ +
Sbjct: 614 AQTGRLSSVNPNLQNIPTR-------------IEEGKKIR----------KAFVPASDDR 650

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            ++  D + IE RVLA IA +   I AF +  DI+  T +      +D+V+   R   K 
Sbjct: 651 VILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVSLDEVTSSMRREAKA 710

Query: 435 MELALGY 441
           +   + Y
Sbjct: 711 VNFGIVY 717


>gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 613

 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q  GE  ++ +   +  + R + +  G+ +L  L +T N  G RI+     + QE +  E
Sbjct: 208 QPIGEMREQAIRIAKGDYSRKVAVH-GQDELGQLAETFNQLGERIE-----ETQEAMESE 261

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           R +LD  +  +TDG++ + R+   + +    ++ ++ V   E   +SIL+   + Q+ ++
Sbjct: 262 RNRLDSVLSHMTDGVVATDRRGKVITINEMAMSLLN-VTSEEAVGQSILT---LLQIDEE 317

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR-TGRWSGCVFQPQNLPRQER 335
             L +L  S   +L     ++ V ++  LR  + F    R +G  SG V    ++  QE+
Sbjct: 318 YTLRKLLESPDEMLIERPNNDIVGTNLILR--IDFSMIRRESGFISGLVAVMHDVTEQEK 375

Query: 336 SEE 338
           +E+
Sbjct: 376 NEQ 378


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
          Length = 580

 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
          Length = 580

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  ++AF    DI+  T    F    D
Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 695

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 696 EVTATMRRQAKAVNFGIVY 714


>gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208]
          Length = 531

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D
Sbjct: 291 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 350

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 351 EVDSLMRRQAKAVNFGIVY 369


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +  DGR+  T      + TGR S      QN+P +       T+  + + +    +
Sbjct: 602 LLDVIQPDGRVH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPS 653

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           +P G    C                D + +E RVLA ++G+    +AF  G DI+  T  
Sbjct: 654 EPDGYIFSC----------------DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAM 697

Query: 415 KAFN--TPIDKVSKEQRAIGKVMELALGY 441
           K F+  +P D+V+   R   K +   + Y
Sbjct: 698 KIFHLESP-DEVTPLMRRHAKAVNFGIVY 725


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D
Sbjct: 454 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 513

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 514 EVDSLMRRQAKAVNFGIVY 532


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +  DGR+  T      + TGR S      QN+P +       T+  + + +    +
Sbjct: 602 LLDVIQPDGRVH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPS 653

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           +P G    C                D + +E RVLA ++G+    +AF  G DI+  T  
Sbjct: 654 EPDGYIFSC----------------DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAM 697

Query: 415 KAFN--TPIDKVSKEQRAIGKVMELALGY 441
           K F+  +P D+V+   R   K +   + Y
Sbjct: 698 KIFHLESP-DEVTPLMRRHAKAVNFGIVY 725


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  ++ AD + IE RVLA I+ ++   +AF +  DI+  T    F   +D
Sbjct: 646 LRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMDVFGVGMD 705

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 706 EVDSNMRRSAKAVNFGIVY 724


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score = 37.4 bits (85), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  ++ AD + IE RVLA I+ ++   +AF +  DI+  T    F   +D
Sbjct: 646 LRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMDVFGVGMD 705

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 706 EVDSNMRRSAKAVNFGIVY 724


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score = 37.4 bits (85), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S    L+  AD + IE RVLA IA +D  I+AF    DI+  T    F+   +
Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 695

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 696 EVTATMRRQAKAVNFGVVY 714


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score = 37.4 bits (85), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 130/321 (40%), Gaps = 45/321 (14%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
           A + KG+  S P +   A+H+    +     ++ + A  E  ++L  + D E  L  +  
Sbjct: 426 AVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLA 485

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITG 250
            +  +G  +D + +  ++  +A   K L+E I  L   +  I S +Q   L + LF   G
Sbjct: 486 EMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNINSPKQ---LGVILFEKLG 542

Query: 251 IDLVDMSE---GTLKSILS-----HSNITQLAKDLILNRLASSG-SAILKLNTLSEAVSS 301
           +  V  ++    T   +L      H+ I ++     L ++ S+    +LK+ T  E    
Sbjct: 543 LPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKV-TDKETHKV 601

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             R   TL     ++TGR S      QN+P +             L  G  I        
Sbjct: 602 HTRFNQTL-----TQTGRLSSVDPNLQNIPIR-------------LEEGRKI-------- 635

Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+  
Sbjct: 636 ---RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVE 692

Query: 421 IDKVSKEQRAIGKVMELALGY 441
            D+V    R   K +   + Y
Sbjct: 693 QDEVDSLMRRQAKAVNFGIVY 713


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score = 37.4 bits (85), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA +   + AF    DI+  T    F    D
Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKD 710

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729


>gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
 gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
          Length = 879

 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 29/158 (18%)

Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           I KLN+     L + ++ +G++    +    ++TGR S      QN+P +          
Sbjct: 584 ITKLNSTYAKGLVKDITREGKIHTRYE-QTLAQTGRLSSVNPNLQNIPTR---------- 632

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
              +  G+ I           ++ + AS  + ++  D + IE RVLA IA +   I AF 
Sbjct: 633 ---IEEGKKIR----------KAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFK 679

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +  DI+  T +      +D+V+   R   K +   + Y
Sbjct: 680 HDVDIHTKTASDVNGVSLDQVTSSMRREAKAVNFGIVY 717


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D
Sbjct: 635 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 694

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 695 EVDSLMRRQAKAVNFGIVY 713


>gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
 gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
          Length = 918

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 35/78 (44%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A   +  V AD + IE R+L  ++ ++  I AF +GEDI+              
Sbjct: 680 IRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKSGEDIHEAVAVNVLGAQKGA 739

Query: 424 VSKEQRAIGKVMELALGY 441
           VSK  R+  K +   + Y
Sbjct: 740 VSKAVRSKAKAINFGVIY 757


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes str. 4b F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
          Length = 875

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D
Sbjct: 635 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 694

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 695 EVDSLMRRQAKAVNFGIVY 713


>gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
 gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
          Length = 585

 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           +RS + A +G  LV+AD A +E R+LA ++G+D  + A A G D+Y 
Sbjct: 329 IRSAVRADDGWLLVIADAAQLEPRILAAMSGDDAMVAAGARG-DLYA 374


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score = 37.4 bits (85), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D
Sbjct: 635 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 694

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 695 EVDSLMRRQAKAVNFGIVY 713


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA I+ +   I+AF N  D++  T    F+   +
Sbjct: 639 IRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEE 698

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 699 EVTPAMRRQAKAVNFGIVY 717


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA I+ +   I+AF N  D++  T    F+   +
Sbjct: 639 IRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEE 698

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 699 EVTPAMRRQAKAVNFGIVY 717


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score = 37.4 bits (85), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D
Sbjct: 645 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 704

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 705 EVDSLMRRQAKAVNFGIVY 723


>gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 562

 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
            +R+C+ A +G KLVVAD A +E RVL  ++G D ++   A   D+Y 
Sbjct: 312 VLRTCVRADSGWKLVVADAAQLEPRVLTALSG-DRRLADVAAATDLYA 358


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score = 37.0 bits (84), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA ++  I AF +  DI+  T    F+   +
Sbjct: 635 IRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694

Query: 423 KVSKEQRAIGKVMELALGY 441
           +V+   R   K +   + Y
Sbjct: 695 EVTANMRRQAKAVNFGIVY 713


Searching..................................................done


Results from round 2




>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 675/675 (100%), Positives = 675/675 (100%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 674/675 (99%), Positives = 674/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 673/675 (99%), Positives = 673/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE VS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSETVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 673/675 (99%), Positives = 673/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 672/675 (99%), Positives = 672/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD PYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 672/675 (99%), Positives = 672/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
            PLKAEGYEAKRYRK
Sbjct: 661 FPLKAEGYEAKRYRK 675


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/675 (72%), Positives = 567/675 (84%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T    MPSDLL++
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            LTKMEEGKALIARFCKGSI+  PYD  RANHVQAWQLFGEYCKRDVEATREL+KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER++LDE+  +LT G+I S+R+T  
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  YLFL TG+DL DM+E T+ + LS  +I QL+K ++ NRL+SS SAILKLNTLS AVS
Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPDIPQLSKAILNNRLSSSQSAILKLNTLSGAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            D RLRGTLQF+GASRTGRWSGCVFQPQNLPRQ  + + + + I+ L+ G  I DPL  A
Sbjct: 301 PDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIAS GKKL+VADLAGIEARVLAW+AGE WK+ AFANGEDIY T Y+KAFN P
Sbjct: 361 SDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +  V+K+QRAIGKVMELALGYQGGA+VF+ MAS  GL+LQQFS+++K+T+T EDWEQA+ 
Sbjct: 421 LSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQAQR 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             LWMQ+ +PEFAV D  IGTACELVK+AWRAKH+GV+QLWKD  E F CV+++G SISA
Sbjct: 481 RCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRV  VP L+M++  ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN
Sbjct: 541 RRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDIL  GM NATK GYDIVLTVHDEIV E PDTP FS   LCSLMT+NP+WAKG
Sbjct: 601 IVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEA RYRK
Sbjct: 661 LPLKAEGYEAVRYRK 675


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/675 (73%), Positives = 564/675 (83%), Gaps = 2/675 (0%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T    MPSDLL++
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            LTKMEEGKALIARFCKGSI+  PYD  RANHVQAWQLFGEYCKRDVEATREL+KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER+KLDE++  LT G+I SSR+T  
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  YLFL  G+DL DM+E T+ + LS  NITQ AKD++ NRL+SS SAILKLNTLS AVS
Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKDILNNRLSSSQSAILKLNTLSGAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            D RLRGTLQFYGASRTGRWSGCVFQPQNLPR   S E + + I++ N      DPL  A
Sbjct: 301 PDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSN--FPSDDPLRFA 358

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIAS GKKLVVADLAGIEARVLAWIAGE WK+ AFANGEDIY T Y+KAFN P
Sbjct: 359 SDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIP 418

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +  V+K+QRAIGKVMELALGYQGGA+VF+TMAS+ GLDL+QFS+++K T+T +DWEQA+ 
Sbjct: 419 LSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQAQR 478

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             LWMQ+ YPEFAV D  IGTACELVK AWRAKH+GV+QLWKD  E F CV+++G SISA
Sbjct: 479 RCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 538

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVA VP L+M++  ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN
Sbjct: 539 RRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 598

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDIL  GM NAT+ GYDIVLTVHDEIV ETPDTP FS   LC LMT+NP WAKG
Sbjct: 599 IVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWAKG 658

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEA RYRK
Sbjct: 659 LPLKAEGYEALRYRK 673


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL-NRGETIADPLG 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658

Query: 659 KGLPLKAEGYEAKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYESKRYRK 675


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/698 (30%), Positives = 331/698 (47%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D  PV++ D      +P ++ 
Sbjct: 1   MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q + D  V   A N+ FERI   K  GI +    W CT V +   GLP SL+ A +    
Sbjct: 61  QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTG- 119

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K+ +GK LI  F   CK ++ +         H  + W  F  Y  RDVE    + 
Sbjct: 120 -ADKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+ + E + ++LDQ INDRG ++DL+LV K  +   + R++L   + +LTD  +
Sbjct: 179 EKLQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + + ++K++L  +   +   +++  R   + S++ K 
Sbjct: 237 DNPNSVVQMKSWLSEK-GLETDSLDKASVKALLKEA--PEHLSEVLELRQLLAKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  AV +DGR RG LQFYGA+RTGR++G + Q QNLP+   S+    + +      + 
Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDA 353

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +        G+ S+ +R+  +   G K +VAD + IEARV+AW+AGE W+ + FA    I
Sbjct: 354 LEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P+++V+K    R  GK+ ELALGY G     K M               
Sbjct: 414 YEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L     + +  AWR  +  +++LW D+  
Sbjct: 460 --------------------------ALDMGLTEEELKPLVYAWRNANPNIVRLWWDVDR 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
                V E       R+              + I LPS R+L Y   +   +        
Sbjct: 494 AVKEAVTERCRTETHRI------RFEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVT 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                AT +  R  +YG K  ENIVQAISRD+LC  M+N  ++G +IV+ VHDE+V E P
Sbjct: 548 YEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                 V  +C LM + P WA GL L+A+G+E   Y+K
Sbjct: 608 --LEICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/702 (30%), Positives = 320/702 (45%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S +PL K GV+ Y E     I L AY+ D +PV++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DE V+  A N+ FERI   + LG      +  + W C+ V A T GLP SL+    
Sbjct: 61  LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  FC+    +            +    W +F +Y  RDVE  
Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + +RL   P+     D + +DQ INDRG R+D++LV    E+  + R KL E + ++T
Sbjct: 179 MGIQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEIT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G++   + +  +  +L  +        ++  R   + S+
Sbjct: 239 E--LENPNSVQQMKAWLSD-NGLETDTLGKKAVAELLKSA--PPKLSQVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + + V +DGR RG  QFYGA+RTGR+SG   Q QNLP+   S+    +++    
Sbjct: 294 VRKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSG 353

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             E +     D     S  +R+  I   G + +VAD + IEAR++AW AGE W+   FA 
Sbjct: 354 NFEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALDMGLTEDELPPLVDAWRQSNPNIVKFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
           ++       V+   + S   +    R         + I LPS R+L Y   K   +    
Sbjct: 494 NVDHAVMEAVKFKHTTSEYGLTFSCR------SGMLFITLPSGRKLAYVKPKIGTNKFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                    +T +  R  +YG K  ENIVQA +RDILC  M+  T     IV+ +HDE+V
Sbjct: 548 QCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQ--TLRCCSIVMHIHDEVV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 606 IEA--DPSMSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/704 (30%), Positives = 328/704 (46%), Gaps = 92/704 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YA      + L  Y  D   V++ D      +P +++
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D +V   A N++FER+     LG  +  + W CT V + T GLP SL++A  AL  
Sbjct: 64  SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
            +   K+ EGK LI  FC       P   T+AN            + W+ F  Y  RDVE
Sbjct: 124 EKQ--KLTEGKDLIRYFC------VPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVE 175

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++ KRL   P+ D   + + LDQ INDRG  +D++LV +   + A+ R++L + + +
Sbjct: 176 TEMQIQKRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQE 235

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +      ++ +L    G++   + +  +  ++  +   +  K ++  R   + 
Sbjct: 236 LTG--LDNPNSVQQMKQWLAD-HGLETDTLGKKVVAELVRSA--PEPLKTVLSLRQQLAK 290

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S++ K   +  AV +DGR  G  QFYGA+RTGR+SG + Q QNLP+   S+    + +  
Sbjct: 291 SSVKKYAAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMR 350

Query: 347 LNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
               E I     D     S  +R+  +  +G+K +VAD + IEARV+AW AGE W++K F
Sbjct: 351 GGNYEAISMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVF 410

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            +G+DIY  + ++ F+ P++K  V+   R  GK+ ELALGY G     K+M         
Sbjct: 411 EDGDDIYSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------- 462

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A++  L     + +  AWR  +  + Q 
Sbjct: 463 --------------------------------ALEMGLAEEELQPLVDAWRTSNPMITQF 490

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
           W D+       V++   + +  +              + I LPS RRL Y   +   +  
Sbjct: 491 WWDVDRAVKECVKKRVPMESHGLH------FDYRSAMLFITLPSGRRLAYVKPRIGENQF 544

Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
              +          +  R  +YG K  ENIVQ  +RDILC  M+  T     IV  VHDE
Sbjct: 545 GRESVTYMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMR--TLRNCAIVAHVHDE 602

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           I+ E       S+  +C  M + PSWAKGL L+A+GYE + Y+K
Sbjct: 603 IIIEADR--RMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/698 (30%), Positives = 316/698 (45%), Gaps = 77/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + ID+ET S  PL K GV+ YAE     I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DETV   A N++FER+   + LGI +    W C+ + A T GLP SLK+    L  
Sbjct: 61  AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120

Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K+EEGK LI  FC        +        A+  + W+LF EY KRDVE    + 
Sbjct: 121 DRQ--KLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            RL   P+ + E + +++DQ INDRG  +D   V +      + +    E    LTD  +
Sbjct: 179 ARLKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTD--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+ +  +++  +  +L     T   ++++  R   S +++ K 
Sbjct: 237 ENPNSPLQLMDWLHGK-GLSVESLAKSEVTKMLK--TATGDVREVLELRQQLSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +     +D R RG  QFYGA+RTGR++G + Q QNLP+   ++    +T+      E 
Sbjct: 294 MAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFEL 353

Query: 353 IADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         + S  +R+  +     + VVAD A IEARVLAW+AGE W +  F    DI
Sbjct: 354 LDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T ++ F+  ++K   + + R  GK   L+ GY G       M               
Sbjct: 414 YCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     AV+  +     + +   WRA +  ++Q W D+  
Sbjct: 460 --------------------------AVESGMKEEELQPLVDLWRASNPHIVQFWWDVDR 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA--- 583
                V+    +    +  V           + I LPS R L Y+  +   +        
Sbjct: 494 AVKTCVKRRVEVETHGIRCV------YKSGVLFIRLPSGRELAYAKPRIGENRFGGESVT 547

Query: 584 ------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                 T +  R  T+GGKL ENI Q  +RD+L   MK     G+DIV+ VHDEIV E P
Sbjct: 548 YEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                SV  +CS+M +NP WAKGLPLKA+GYE + YRK
Sbjct: 608 YGVS-SVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/700 (29%), Positives = 319/700 (45%), Gaps = 82/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ + IDIET S   L K GV+ YAE     I L  Y+ D   V++ D      +P++++
Sbjct: 1   MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D +V   A N++FER+   K L +   +    W C+ V +   GLP SL+     L
Sbjct: 61  NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              +   K+ EGK LI  FC     +            + +  W+ F  Y  RDVEA   
Sbjct: 121 GLEKQ--KLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMS 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + +RL   P+ +     + LDQ INDRG  ID+  V +  ++  Q R+KL   +  +T+ 
Sbjct: 179 IQQRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      ++ +L    G++   + +  +  +L      +    ++  R   + S+I 
Sbjct: 238 -LENPNSIQQMKEWLAD-NGLETDSLGKKAVAEMLK--TAPEPLGTVLELRQQLAKSSIK 293

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  AV +DGR RG  QFYGA+RTGR+SG + Q QNLP+    +    + +      
Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353

Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +         + S+ +R+  +   G K +VAD + IEARV+AW+AGE W+I  F NG 
Sbjct: 354 DALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ FN P++K  V+   R  GK+ ELALGY G     K+M             
Sbjct: 414 DIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  +     + +  AWR  +  + +LW D+
Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581
                  V++        +  +           + IVLPS RRL Y   +   +      
Sbjct: 494 DHAVKTCVKQKIPTETHGIKFI------YQSGMLFIVLPSGRRLSYVKPRMGENVFGGES 547

Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQAISRDILC  M+  T     IV  VHDEI+ E
Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 605

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+ T+C  M + P+WA GL L A+GYE + Y+K
Sbjct: 606 ADM--RMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/695 (30%), Positives = 330/695 (47%), Gaps = 77/695 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L K GV+AYA+     + L AY++D    ++ D  +   +P ++   +
Sbjct: 5   LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+ VM  A N+ FER    K  G  +  + W C++V A    LP SL+     L   + 
Sbjct: 65  FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124

Query: 122 LTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             KM+EGK LI  FC     +            +  + W+LF  YC RDV+  +E+ ++L
Sbjct: 125 --KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKL 182

Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
              P+ + E +L+ LDQ INDRG  +D +LV +        +  + +   +LT   + + 
Sbjct: 183 QHFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG--LENP 240

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
                ++ +L    G+++  +S+ T+  ++  S+     ++L+  RL  + +++ K   +
Sbjct: 241 NSVAQIKSWL-GENGVEMESLSKKTVAGLIEESDGE--VQELLRLRLLMAKTSVKKYEAM 297

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-- 353
             +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+    +  + + +    R E +  
Sbjct: 298 ERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVEL 357

Query: 354 --ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                  + S+ +R+  I   G + VVAD + IEARVLAW++GE W+++ FA+   IY  
Sbjct: 358 LYDSTPNVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIYEA 417

Query: 412 TYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           + +  F+ PI++V+K    R  GK+ ELALGY G      +M                  
Sbjct: 418 SASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMG----------------- 460

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A+   L+      +  AWR+ +  + Q W D+     
Sbjct: 461 -----------------------ALDMGLVEEELAPLVSAWRSANPHITQFWWDVDAAAV 497

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT------- 582
             V E     A       R+V       + + LPS R+L Y   +   +           
Sbjct: 498 KAVTEKKKTRA------GRIVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLTYEG 551

Query: 583 --ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                +  R  TYG KL ENIVQ  +RD+L E M    + GY IV+  HDEI++E P+  
Sbjct: 552 IAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVPEGT 611

Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             SV  +C++M   P WA GLPL+A+GYE   Y+K
Sbjct: 612 -GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/698 (31%), Positives = 337/698 (48%), Gaps = 79/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M KL ID+ET S   L K GV+ YAE     I L AY+ +D  VK+ D      +P ++L
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DE V   A N+ FER+   + LG  +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   KM EGKALI  F   CK +  +       ++H ++ W  F EY +RDVE    + 
Sbjct: 121 DKQ--KMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+S  E + + +DQ INDRG  ID  LV    +     R++  +  ++LT   +
Sbjct: 179 KKLSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +++  ++S L ++      K+++  R   S S++ K 
Sbjct: 237 ENPNSPLQLKEWLNKK-GLEIDSLAKKDVESALKNT--EGDIKEVLELRQELSKSSVRKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + +      D R RG +QFYGA+RTGR+SG + Q QNL R    +  L +++      ET
Sbjct: 294 DAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +      P  + S  +R+  IA  G + +++D + IEARVLAW+AGE W + AF NGEDI
Sbjct: 354 MEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDI 413

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T ++ F  P++K  V+   R  GK+  LA GYQG     K M               
Sbjct: 414 YCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                      ++  L     + +  +WR  +  ++ LW D+  
Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
               VV+       R       LV+   K  + I LPS RRL Y   K   +     +  
Sbjct: 494 VVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIV 547

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                  ++  +  +YGGK  ENIVQAI+RDIL E M    K G++IV+ +HDE+V E  
Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +   S+  +  +M+  PSWA GL L A+G+E++ Y+K
Sbjct: 606 -SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642


>gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
 gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
          Length = 662

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/718 (30%), Positives = 323/718 (44%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ Y       I L  Y+ D  PVK+ D      +P D+L
Sbjct: 1   MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98
             L D+TV+  A N+ FER+   + L                       +  + W C+ V
Sbjct: 61  DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154
            A T GLP SLK     L  ++   KM+EGKALI  F      +           ++   
Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQ--KMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPG 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W  F +Y +RDVE    + ++L   P+ D   D + +DQ INDRG RID+DLV K  ++
Sbjct: 179 KWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             + R +L E +  +T+  + +      ++ +L    G+++  + +  + ++L       
Sbjct: 239 DTRSRSELTEKMQAITN--LENPNSVQQMKQWLSD-NGMEVDSLGKKAVTALLK--TAPP 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++  R   + S++ K  T+  AV SD R RG   FYGA+RTGRW+G + Q QNLP+
Sbjct: 294 ELTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E +     D     S  +R+  I  +G +  VAD + IEARV
Sbjct: 354 NHLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446
           +AW AGE WK  AFANGEDIY +T  + F+ P+ K  V+ E RA GK+ ELA GY G   
Sbjct: 414 IAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A++  L       +
Sbjct: 474 ALKAMG----------------------------------------ALEMGLSEDELPDI 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             +WR  +Q +++ W D+ +     V+        +   + RL        + I LPS R
Sbjct: 494 VSSWRDANQQIVKFWWDVDKAVMAAVKN------HKTTRLGRLAFFWQAGMLFITLPSGR 547

Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            L Y   K   +              T +  R  +YG K  ENIVQA SRDILC  MK  
Sbjct: 548 NLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKML 607

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                D+ + +HDE+V E    P  S+ TLC  M + P+WA GL L+A+GY    Y+K
Sbjct: 608 --RHCDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/724 (30%), Positives = 324/724 (44%), Gaps = 112/724 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  YA D   V++ D  +   +P +++
Sbjct: 1   MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98
             L D+ V   A N+ FER+   + L                       +  + W C+ V
Sbjct: 61  DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151
            A T GLP SLK     L   +   KM+EGKALI  F      S P   T+AN       
Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQ--KMDEGKALIKYF------SVPCAPTKANGGRTRNM 172

Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                + W+ F  Y KRDVE    + +RL   P+ D   D + +DQ INDRG R+D+DLV
Sbjct: 173 PFHDPEKWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLV 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            K  E+  + R +L   +  +T+  + +      ++ +L    G++   + +  +  ++ 
Sbjct: 233 AKAIEMDTRSRTELTTAMKDITE--LDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIK 289

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                   + ++  R   + S++ K  T+  AV  DGR RG   FYGA+RTGRW+G + Q
Sbjct: 290 --TAPSELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQ 347

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLA 382
            QNLP+    +    + +      + +     D     S  +R+  I  +G +L V+D +
Sbjct: 348 LQNLPQNHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFS 407

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALG 440
            IEARV+AW AGE W+ K FA+G DIY  + ++ F+ P++K  V+   R  GK+ ELALG
Sbjct: 408 AIEARVIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALG 467

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y G     K M                                         A++  L  
Sbjct: 468 YGGSVGALKAMG----------------------------------------AIEMGLSE 487

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                +  AWR  +  +++ W D+       V+   + S+  +    R         + I
Sbjct: 488 DELPPLVDAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYGLTFSCR------SGMLFI 541

Query: 561 VLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILC 611
            LPS R L Y   K   +              T +  R  +YG K  ENIVQA SRDILC
Sbjct: 542 TLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILC 601

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             MK  T    +IV+ +HDE+V E    P+ S+  LC  M + P WA+GL L+A+GY   
Sbjct: 602 YAMK--TLRNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTTP 657

Query: 672 RYRK 675
            Y+K
Sbjct: 658 FYKK 661


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/698 (29%), Positives = 320/698 (45%), Gaps = 80/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YA      + L  YA D   V + D      +P + +
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D +V     N++ ER+     LG  +  + W CT V + T GLP SL++A  AL  
Sbjct: 64  SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K+ EGK LI  F   C+ +  +      R  H  + W+ F  Y  RDVE   ++ 
Sbjct: 124 EKQ--KLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQ 181

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   P+ D   + + LDQ INDRG  +D++LV +   +  + R++L   + +LT+  +
Sbjct: 182 KRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELTE--L 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + +  +  ++      +  ++++  R   + S++ K 
Sbjct: 240 ENPNSAQQMKQWLAD-HGLETDTLGKKAVAELVK--TAPEPLREVLSLRQQLAKSSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  AV +D R  G  QFYGA+RTGR+SG + Q QNLP+    +    + +      E 
Sbjct: 297 TAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEA 356

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +     D     S  +R+  +  +G+K +VAD + IEARV+AW AGE W++K F +G DI
Sbjct: 357 LSVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDI 416

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F+ P++K  V+   R  GK+ ELALGY G     K+M               
Sbjct: 417 YCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A++  L     + +  AWR  +  + Q W D+  
Sbjct: 463 --------------------------ALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDR 496

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT--- 582
                +++        +              + I LPS RRL Y   + G+  +      
Sbjct: 497 AVKDCIRQRIPTETHGL------RFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVT 550

Query: 583 -----ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                 T +  R  +YG K  ENIVQ  +RDILC  M+  T     IV  VHDEI+ E  
Sbjct: 551 YMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQ--TLKNCSIVAHVHDEIIIEAD 608

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                SV  +C  M + P WAKGL L+A+GYE + Y+K
Sbjct: 609 R--RMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/702 (29%), Positives = 322/702 (45%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S +PL K GV+ Y E     I L AY+ D + V++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L +ETV+  A N+ FERI   + LG      + S+ W C+ + A T GLP SL+    
Sbjct: 61  LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  FC+    +            +    W +F +Y  RDVE  
Sbjct: 121 VLGLEKQ--KLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + +RL   P+     D + +DQ INDRG R+D++LV    E+  + R +L E + ++T
Sbjct: 179 MGIQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEIT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G++   + +  +  +L  +  +     ++  R   + S+
Sbjct: 239 E--LENPNSVQQMKAWLSD-NGLETDTLGKKAVTELLKSA--SPKLSQVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + + V +DGR RG  QFYGA+RTGR+SG   Q QNLP+    +    +++    
Sbjct: 294 VRKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSG 353

Query: 349 RGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             E +     D     S  +R+  I   G + +VAD + IEARV+AW AGE W+ + FA 
Sbjct: 354 NFEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALDMGLTEEELPPLVDAWRQSNPNIVKFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
           ++       V+   + S+  +    R         + I LPS R+L Y   K   +    
Sbjct: 494 NVDHAVMEAVKFKHTTSSYGLTFSCR------SGMLFITLPSGRKLAYVKPKLGTNKFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQA +RDILC  MK  T     IV+ +HDE+V
Sbjct: 548 QCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--TLRCCSIVMHIHDEVV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 606 IEA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/702 (29%), Positives = 311/702 (44%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   VK+ D      +P ++ 
Sbjct: 1   MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114
             L D++V   A N+ FERI   K LG      +    W C+ V +   GLP SL+   +
Sbjct: 61  DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  FC       ++         +  + W+ F  Y  RDVEA 
Sbjct: 121 VLGLEKQ--KLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            ++  RL   P+ D   D + LDQ INDRG ++D+D V K  E+    R+ L   +  LT
Sbjct: 179 MQIQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    GI+   + +  + +++    +     +++  R   + S+
Sbjct: 239 --SLTNPNSVVQMKGWLSD-NGIETETLGKKAVAALID--EVPDEMSEILALRQKLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  +V  DGR+RG  QFYGA+RTGR++G + Q QNLP+    +    + +    
Sbjct: 294 VRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSG 353

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             +++     D     S  +R+  I +  +  +VAD + IEARV+AW AGE W+   FA 
Sbjct: 354 DYDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALEMGLAEEELPELVSAWRCSNPNIVRFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+       ++   S +   V    R         + I LPS R L Y       +    
Sbjct: 494 DVDSAVKKAIKSKTSTATHGVHFSCR------SGMLFITLPSGRVLSYVKPCMGENKFGG 547

Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQA SRDIL   MK  T     IV  VHDEI+
Sbjct: 548 ESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMK--TLRCCSIVAHVHDEII 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + P WA+GL L+A+GYE + Y+K
Sbjct: 606 IEA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 323/700 (46%), Gaps = 81/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ Y+E     I L AY+ D  PV++ D      +P+++L
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L DETV+  A N+ FER+   + LG+D  +  + W CT V   T GLP SL      L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
              +   K+ EGK LI  FC     +  +        +H    W  F  Y  RDVE    
Sbjct: 121 GLDKQ--KLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ D     + LDQ INDRG  ID D V    +L    +  L++ + +LT  
Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      +R +L    G++   + +  +  +L       L K +++ R   + S++ 
Sbjct: 238 -LENPNSVLQMRGWLLD-HGLETESLGKKAVAELLEQPIDENL-KQVLVLRQQLAKSSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +     SD R RG  QFYGA+RTGR++G   Q QNLP+   S+    +++   +  
Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNF 354

Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E +     +   + S+ +R+  +   G K +V+D + IEARV+AW++GE W+ + F NG 
Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M             
Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMD------------ 462

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  L     + +  +WR  +  + +LW  +
Sbjct: 463 ----------------------------ALEMGLTEDELQPLVNSWRDSNINITELWWAV 494

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA- 583
            +     V+E      RR  +   +        + I L S R+LVY   K   +      
Sbjct: 495 DKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548

Query: 584 --------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQAI+RDILC  M+N  K  Y IV  VHDE++ E
Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHVHDEVIIE 606

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P      V  +C LM++ P WA+GL L A+GYE + Y+K
Sbjct: 607 VPMESK--VEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/700 (29%), Positives = 324/700 (46%), Gaps = 81/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIE+ S   + K G + Y+E     I L AY+ D +PV++ D  +   +P D++
Sbjct: 1   MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + L DETV+  A N+ FER+   + LG++  +  + W CT V A T GLP SL      L
Sbjct: 61  KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              +   K+ EGK L+  FC       ++         + +  W+ F  Y  RDVE    
Sbjct: 121 GLDKQ--KLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P++    + + LDQ INDRG  ID+ L      L    + +++E + KLT  
Sbjct: 179 IQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      +R +L    G+++  + +  +K ++  +N  +L K+++L R   + S++ 
Sbjct: 238 -LENPNSVLQMRSWLS-QHGLEVESLGKAAVKELIEQTNDDKL-KEVLLLRQQLAKSSVR 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +      D R RG  QFYGA+RTGR++G   Q QNLP+   S+    + +      
Sbjct: 295 KYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEY 354

Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E +     +   + S+ +R+  I   G K +V+D + IEARV+AW+AGE W+ + F NG 
Sbjct: 355 ELLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGG 414

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ F  P++K  V+   R  GK+ ELALGY G       M             
Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMG------------ 462

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A+   L     + +  +WR  +  + +LW D+
Sbjct: 463 ----------------------------ALNMGLTEDELQPLVASWRETNPAITKLWWDI 494

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT-- 582
                  V  G       +              + I L S RRL Y   +   +      
Sbjct: 495 DSAAKGCVSVGAKTETHGIT------FEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAA 548

Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQA++RDILC  M+N     Y IV  VHDE++ E
Sbjct: 549 VTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNL--KDYRIVGHVHDEVIIE 606

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P     +V  + S+M++ P+WAKGL L A+GYE   Y+K
Sbjct: 607 VPKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/700 (29%), Positives = 314/700 (44%), Gaps = 82/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ + IDIET S   L K GV+ YAE     I L  Y+ D   V++ D      +P +++
Sbjct: 1   MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D++V   A N++FER+   K L +   +    W C+ + +   GLP SL+     L
Sbjct: 61  NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              +   K+ EGK LI  FC     +            + +  W+ F  Y  RDVEA   
Sbjct: 121 GLEKQ--KLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMS 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + +R     + +   + + LDQ INDRG  ID+  V +   +    R+KL   +  +T+ 
Sbjct: 179 IQQRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      ++ +L    G++   + +  +  +L      +    ++  R   + S++ 
Sbjct: 238 -LENPNSVQQMKDWLAD-NGLETDTLGKKAVAEMLK--TAPEPLGTVLELRQQLAKSSVK 293

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  AV +DGR RG  QFYGA+RTGR+SG + Q QNLP+    +    + +      
Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353

Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +         + S+ +R+  I   G K +VAD + IEARV+AW+AGE W+I  F NG 
Sbjct: 354 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ FN P++K  V+   R  GK+ ELALGY G     K+M             
Sbjct: 414 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  +     + +  AWR  +  + +LW D+
Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581
                  V++        +  +           + I LPS RRL Y   +   +      
Sbjct: 494 DRAVKTCVKQKTPTETHGIKFI------YQSGMLFIALPSGRRLAYVKPRMGENMFGGES 547

Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQAISRDILC  M+  T     IV  VHDEI+ E
Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 605

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  +C  M K P+WA GL L A+GYE + Y+K
Sbjct: 606 ADMGT--SLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/702 (30%), Positives = 318/702 (45%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   V++ D     A+PS ++
Sbjct: 1   MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V   A N+ FERI   K LG+     +    W CT V +   GLP SL+    
Sbjct: 61  DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120

Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  F   CK ++ +         H    W  F  Y  RDVE  
Sbjct: 121 VLGLEKQ--KLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + ++L   P+ +G    + LDQ INDRG  +D+DLV +  E+  + R KL   I +LT
Sbjct: 179 MAIQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G++   + +  +  +L     ++    ++  R + + S+
Sbjct: 239 E--LENPNSVVQMKQWLSD-HGLETDTLGKKAVVELLK--TASEPLGKVLELRQSLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +   V +DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    +++    
Sbjct: 294 VKKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSG 353

Query: 349 RGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
               +         + S+ +R+  +   G K +VAD + IEARV+AW+AGE W+ + F +
Sbjct: 354 NFAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFES 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F+ P++K  V+   R  GK+ ELALGY G     K M +      ++ 
Sbjct: 414 GGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 473

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            Q                                         +  AWR+ +  +++LW 
Sbjct: 474 LQ----------------------------------------PLVSAWRSSNPKIVRLWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
           D+       V+E      R       +          I LPS RRL Y   +   +    
Sbjct: 494 DIDRAAMKAVRE------RTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRFGS 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                       +  R  +YG KLTENIVQA SRDILC  M+N       IV+ VHDEIV
Sbjct: 548 DCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNL--RHCSIVMHVHDEIV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E       S   +C  M + P WAKGL L+A+GYE   Y+K
Sbjct: 606 IEADR--RMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/716 (29%), Positives = 318/716 (44%), Gaps = 98/716 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D  PV++ D      +P +++
Sbjct: 1   MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             L ++ V   A N+ FERI   + L                  G  +    W CT + +
Sbjct: 61  AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAW 156
              GLP SL+     L   +   K+ EGK LI  FC+       +S        N    W
Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQ--KLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKW 178

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             F  Y  RDVE    + ++L   P+ D   + + LDQ INDRG  +D+DLV +  ++  
Sbjct: 179 ASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDT 238

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + R +L   + KLT   + +      ++ +L    G+++  + +  +  +L         
Sbjct: 239 RSRAELTAAMKKLT--ALDNPNSVQQMKQWLSD-NGLNVDSLGKKEVAEMLK--TAPAEL 293

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           + ++L R   + S++ K   + +AV +DGR RG  QFYGA+RTGRW+G + Q QNLP+  
Sbjct: 294 QQVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNH 353

Query: 335 RSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             +    + +      + +     D     S  +R+  +   G K +V+D + IEARVLA
Sbjct: 354 LPDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLA 413

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
           W AGE W+ + F  G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     
Sbjct: 414 WFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 473

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K M                                         A++  L     + +  
Sbjct: 474 KAMG----------------------------------------ALEMGLSEGELQPLVT 493

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           AWR  +Q +++ W D+       V+          + +  +        + I LPS RRL
Sbjct: 494 AWRNSNQNIVKFWWDIDRAAMNAVK------YHMDSEICGIKFSYKSGMLFITLPSGRRL 547

Query: 569 VYSDVKGD--------CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K           +Y     T +  R  TYG KL ENIVQA SRDILC  M+  T 
Sbjct: 548 SYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMR--TL 605

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   I + +HDE+V E   +   ++ ++C  M + P+WA GL L+A+GYE   Y+K
Sbjct: 606 SHCFITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/718 (29%), Positives = 317/718 (44%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D   VK+ D  +   +P +L+
Sbjct: 1   MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKT---LGIDIPS-----------------KRWICTSV 98
             L D++++  A N+ FER+   +    LGI +                   + W C+ V
Sbjct: 61  DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQ 154
            A T GLP SL+     L   +   K+ EGK LI  F   C  +  +      R  +  +
Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQ--KLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPE 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W  F  Y  RDVE    +  RL   P+ +     + +DQ INDRG RID+DLV +  E+
Sbjct: 179 KWDAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             + R +L   I K+TD  + +      ++ +L    G++   + +  +  ++       
Sbjct: 239 DTRSRTELTSAIKKMTD--LENPNSVQQMKQWLSN-NGLETDSLGKKVVAELIK--TAPP 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             ++++  R   + S++ K  T+  AV  DGR RG   FYGA+RTGRW+G + Q QNLP+
Sbjct: 294 ELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      + +     D     S  +R+  I  +  +  V+D + IEARV
Sbjct: 354 NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446
           +AW AGE W+ K FA G DIY  + ++ F+ P++K  ++   R  GK+ ELALGY G   
Sbjct: 414 IAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A++  L       +
Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWR  +  +++ W D+       V+       +   +   L        + I LPS R
Sbjct: 494 VDAWRQTNPNIVKFWWDVDRAVMEAVKH------KHTTSCYGLTFSCRSGMLFITLPSGR 547

Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            L Y   K   +              T +  R  +YG K  ENIVQA SRDILC  MK  
Sbjct: 548 NLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMK-- 605

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           T    +IV+ +HDE+V E    P  S+  LC  M + P WA+GL L+A+GY    Y+K
Sbjct: 606 TLRNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/702 (29%), Positives = 313/702 (44%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET S QPL K GV+ Y E     I L AY+ D  PV+  D      +PS++L
Sbjct: 1   MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V   A N+ FERI   + LG      +    W C+ V A   GLP SL+ A  
Sbjct: 61  CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  FC+    +            +    W  F +Y  RDVE  
Sbjct: 121 VLGLEKQ--KLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             +  RL   P+ D   + + LDQ INDRG  +D++LV +  ++  + R +L + + +LT
Sbjct: 179 MSIQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    G++   + +  +  +L      Q  + ++  R   + S+
Sbjct: 239 --SLDNPNSVQQMKQWLAD-NGVETDTLGKKAVAELLK--TAPQQLQKVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV +DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + +    
Sbjct: 294 VKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAG 353

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             + +     D     S  +R+  +    +K +VAD + IEARV+AW+A E W+   FA 
Sbjct: 354 GFDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAE 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G+DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M           
Sbjct: 414 GKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L       +  AWR  +  ++Q W 
Sbjct: 464 ------------------------------ALEMGLSEDELPALVSAWRQANPKIVQFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581
            +       V    +     +      +       + I LPS R L Y   K G+  +  
Sbjct: 494 AVDRAVMDAVTRKTTTKTHGI------IFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQA SRDILC  MK  T     IV+ +HDE+V
Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMK--TLRCCSIVMHIHDEVV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E       S+  +C  M + P WA GL L+A+GYE   Y+K
Sbjct: 606 IEADR--RMSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/700 (29%), Positives = 316/700 (45%), Gaps = 82/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           ++ L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D      +P +++
Sbjct: 4   INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D++V   A N++FER+   K L +   +    W C+ V +   GLP SL+     L
Sbjct: 64  NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              +   K+ EGK LI  FC     +            + +  W+ F  Y  RDVE+   
Sbjct: 124 GLEKQ--KLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEML 181

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + +RL    + +     + LDQ INDRG  ID+  V +  E+    R+KL   +  +T+ 
Sbjct: 182 IQQRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN- 240

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      ++ +L    G++   + +  +  +L      +    ++  R   + S++ 
Sbjct: 241 -LENPNSVQQMKDWLAD-NGLETDSLGKKVVAEMLK--TAPEPLGTVLELRQQLAKSSVK 296

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  AV SDGR RG  QFYGA+RTGR+SG + Q QNLP+    +    + +      
Sbjct: 297 KYTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 356

Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +         + S+ +R+  I   G K +VAD + IEARV+AW+AGE W++  F  G 
Sbjct: 357 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGG 416

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ FN P++K  V+   R  GK+ ELALGY G     K+M             
Sbjct: 417 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMG------------ 464

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  +     + +  AWR  +  + +LW D+
Sbjct: 465 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 496

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581
                  V++    +   +  +           + IVLPS RRL Y   +   +      
Sbjct: 497 DRAVKTCVKQKTPTATHGIKFI------YQSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550

Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQAISRDILC  M+  T     IV  VHDEI+ E
Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 608

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  +C  M K P+WA GL L A+GYE + Y+K
Sbjct: 609 ADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/692 (39%), Positives = 376/692 (54%), Gaps = 25/692 (3%)

Query: 1   MS-KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           M   L++D+ET S +P+ K G  +YAE   I L A+A ++  V++WD T++S +P++L Q
Sbjct: 1   MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D   +  AHNS F+R +   + GI I   RW  T V A  +GLP +L   C  L   
Sbjct: 60  ALSDPNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118

Query: 120 EHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
               K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL 
Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178

Query: 179 PLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             +  D E + W  DQ INDRG  +D+ L     E +  E+K+L +    LTD  ++++ 
Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  ++    G+DL DM + TL+  ++  +I    ++L+  RL SS ++  K   L 
Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLRELLAIRLQSSTTSTSKYKALM 298

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353
             VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    +  + + I+AL  G      
Sbjct: 299 NGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIY 358

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDI 408
            D + L S  +R CI+A  GKKLVV+DL+ IE R+LAW+AGE WKI AF+      G D+
Sbjct: 359 DDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADL 418

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y   YA+AFN   + V K  R IGKVMEL LGY GG   F T A    LDL + ++    
Sbjct: 419 YKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALP 478

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
               +    A S +    +    + + + +  T C+ +K+ WR  H   +  W +L +  
Sbjct: 479 NIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDTV 537

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--A 583
              +   G     R   V     RR K  + IVLPS R + Y   +   G  SY+     
Sbjct: 538 RHAISSPGITFPCRKLKV-----RRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNPY 592

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           + +  R +TYGGKL EN+ QA +RD+L   M     +GYDIVLTVHDE+++E PD P F+
Sbjct: 593 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAFN 652

Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 653 HEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/718 (28%), Positives = 314/718 (43%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  YA D  PV++ D  +  ++P ++L
Sbjct: 1   MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98
             L D+TV   A N+ FER+   + L                       +    W C+ V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154
            +   GLP SL+     LN      KM+EG+ LI  FC    ++            + + 
Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCIPCKETKANGGRTRNLPQHALD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W LF  Y KRDVE    + +RL   P+     + + LDQ INDRG  IDL+L  +   L
Sbjct: 179 KWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVAL 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            A+ R+ L   + + T   + +      +  +L    G+    + +  ++ +L      +
Sbjct: 239 DAKSRESLMAALKERTG--LENPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLK--TAQE 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++L R   + S++ K   +      DGR RG  QFYGA+RTGR++G   Q QNLP+
Sbjct: 294 PLRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E +         + S  +R+  +   G K VV+D + IEARV
Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446
           ++W+AGE WK + FA G+DIY +T ++ F  P+ K  ++   R  GK+ ELA GY G   
Sbjct: 414 ISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A+   +       +
Sbjct: 474 ALKAMG----------------------------------------ALDMGIPEEELGNL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            ++WR+ +  ++  W  +       +++   +    +    +         + I LPS R
Sbjct: 494 VQSWRSANPHIVDFWWQVDGAVKTTIKQRIPVWVNNIRFFCQ------SGMLFIELPSGR 547

Query: 567 RLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           RL Y   + G+  +           AT +  +  +YG K  ENIVQ ISRDILC  M+  
Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQ-- 605

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           T     IV  VHDE++ E P     SV  +C  M + P WA+GL L+A+GY  + Y+K
Sbjct: 606 TLRCCAIVGHVHDELIIECPKDT--SVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL ENI QA +RDIL   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/702 (30%), Positives = 323/702 (46%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   V++ D T    +PSD++
Sbjct: 1   MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DETV+  A N+ FERI   + LG+     I    W C+ V A T GLP SL+    
Sbjct: 61  TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----VQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  F +    +        NH       W  F +Y  RD+E  
Sbjct: 121 VLKLDKQ--KLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + ++L   P+ D   D + LDQ INDRG  +D+ LV +   +  + R +L   +  LT
Sbjct: 179 MSIQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G++   + +  +  +L  + +     D++  R   + S+
Sbjct: 239 E--LDNPNSVQQMKQWLAD-NGMETDTLGKKIVAELLKTAPL--DLADVLSLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV +DGR RG  QF+GA+RTGRW+G + Q QNLP+    +    + +    
Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFG 353

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             + +     D     S  +R+  +   G +L+V+D + IEARV+AW+AGE+W+   FA 
Sbjct: 354 DFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALDMGLEEDELPQLVDAWRQANPCIVKFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581
           D+ +     V+       +R  +   +        + I LPS RRL Y   + G+  +  
Sbjct: 494 DVDKAAMEAVR------YKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547

Query: 582 T--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                    AT +  R  +YG K  ENIVQA +RDILC  M+  T     IV+ VHDEIV
Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQ--TLQHCSIVMHVHDEIV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + PSWAKGL L+A+GYE   Y+K
Sbjct: 606 IEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/689 (38%), Positives = 372/689 (53%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPHLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +         F + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYNESVKHKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL ENI QA +RDIL   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/689 (38%), Positives = 373/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +DEPV +WD T    +P  L + +  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   F + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYNESVKRKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/703 (29%), Positives = 317/703 (45%), Gaps = 86/703 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LPK GV+ Y E     I L AY+ D +PV++ D      +P +++
Sbjct: 1   MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+TV+  A N+ FERI   + LG      +  + W C+ + A T GLP SL+    
Sbjct: 61  AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGS---IDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  FC+       +      R  H    W+ F  Y  RDVE  
Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             +  +L   P+ +   + + +DQ INDRG R+D++LV +   +  + R++L   I  +T
Sbjct: 179 MGIQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    GI+   + +  +  +L   +      D++  R   + S+
Sbjct: 239 E--LENPNSVQQMKQWLSD-NGIETDSLDKKAVAELLK--DAPDNLADVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + + V SDGR RG  QFYGA+RTGR+SG   Q QNLP+    +    +++    
Sbjct: 294 VRKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSG 353

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             + +     D     S  +R+  I        VAD + IEARV+AW AGE W+ + F  
Sbjct: 354 DFDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEK 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461
           G DIY  + ++ F  P++K  ++   R  GK+ ELALGY G     K M +   GL+ ++
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLNEEE 473

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               V +      W QA                                      +++ W
Sbjct: 474 LPALVDA------WRQANPR-----------------------------------IVEFW 492

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
             +       V+   + +   +    +         + I LPS R+L Y   K   +   
Sbjct: 493 WAVDRAVMEAVKYKHTTTDYGLTFSCK------SGMLFITLPSGRKLAYVKPKIGTNKFG 546

Query: 582 ---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                      T +  R  +YG K  ENIVQA +RDILC  MK  T     IV+ +HDE+
Sbjct: 547 GSCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--TLRCCSIVMHIHDEL 604

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 605 VIEA--DPKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/718 (28%), Positives = 311/718 (43%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D   V + D  +   +P  ++
Sbjct: 1   MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98
             L D+TV+  A N+ FER+   + L                       +  + W C+ V
Sbjct: 61  DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----VQ 154
            A T GLP SL+     L   +   K+ EGK LI  F      +        NH      
Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQ--KLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W+ F +Y  RDVE    +  RL   P+ +   D + +DQ INDRG R+D+DLV +  E+
Sbjct: 179 KWEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             + R +L   +  +T   + +      ++ +L    G++   + +  +  ++       
Sbjct: 239 DTRSRSELTAAMKDMT--ALDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIK--TAPP 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++  R   + S++ K  T+  AV  DGR RG   FYG +RTGRW+G + Q QNLP+
Sbjct: 294 ELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      + +     D     S  +R+  I  +G +  V+D + IEARV
Sbjct: 354 NHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446
           +AW AGE W+ K F  G DIY  + ++ F+ P++K  ++   R  GK+ ELALGY G   
Sbjct: 414 IAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A++  L       +
Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWR  +  +++ W D+       V+   + S+  +    R         + I LPS R
Sbjct: 494 VDAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYGLTFSCR------SGMLFITLPSGR 547

Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            L Y   K   +              T +  +  +YG K  ENIVQA SRDILC  MK  
Sbjct: 548 NLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMK-- 605

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           T     IV+ +HDE+V E    P+ S+  LC  M + P WAKGL L+A+GY    Y+K
Sbjct: 606 TLRCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/700 (31%), Positives = 317/700 (45%), Gaps = 76/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L IDIET S   L K GV+AYAE     I L  YA+DDEPV+L D      +P ++L
Sbjct: 1   MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  ++  A N+ FER    K     +P ++W CT V A T GLP  L +    L  
Sbjct: 61  NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K   GKALI  F   CK +  +         H    W  F  YCK+DV   R++ 
Sbjct: 121 KQQ--KDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K L   P+ + E  LW LDQ IND G  +D  LV        Q + KL     KLT   +
Sbjct: 179 KTLERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            + +    L+ +L    G+++  +++ ++  +L  +  +   K ++  R   + +++ K 
Sbjct: 237 DNPKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTE-SSTVKQMLELRQEMAKTSVKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A   DGR+RG LQFYGA+RTGRW+G + Q QNLPR    +    + +      E 
Sbjct: 296 LAMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEM 355

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  +   G + +VAD + IEARV+AW+A E W++  F     I
Sbjct: 356 LELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F+ PI++++K    R  GKV ELALGYQGG      M               
Sbjct: 416 YEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG-------------- 461

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+K+ L       + K WR     +++ W D   
Sbjct: 462 --------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTEA 495

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577
                V+E  ++      +            + I LPS RRL Y   +            
Sbjct: 496 AAIKAVKEKTTVELHHGIH-----FIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPAL 550

Query: 578 SYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           +Y      T Q  R  TYGGKL ENIVQA++RD L E +      GY  V+ VHDE V E
Sbjct: 551 TYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVME 610

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P     S+   C +M +   WA GLP++A+G+E+  Y+K
Sbjct: 611 MPHG-VGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/694 (31%), Positives = 313/694 (45%), Gaps = 74/694 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET SP  L K GV+ Y       I L +YA D   V+  D      +P  +L
Sbjct: 1   MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A+N+ FER      LG  +    W C+ V A T GLP SLK+    LN 
Sbjct: 61  DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
                KM+EGK LI  FC    +S       ++    W+LF  Y  RDVE    + ++L 
Sbjct: 121 DAQ--KMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLA 176

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             P+ D   + + +DQ INDRG RID  L      +  + R +      KLT   + +  
Sbjct: 177 DFPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPA 234

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               L+ +L    G  +  M++ ++   L+  N T   ++ +  R   S S++ K   + 
Sbjct: 235 SPLQLQEWL-NQHGCPIESMAKESVDDALA--NATGQVREALELRQELSRSSVAKYRKMI 291

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +   +D R  G LQFYGA+RTGRW+G + Q QNLPR    +    + +     GET+   
Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351

Query: 357 L----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                   S  +R+  I S   + +VAD + IEARVLAW+AGE+  + AF NGED+Y  T
Sbjct: 352 YSSVPDTLSQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCAT 411

Query: 413 YAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            +  F  P++K  V+ E R  GK+  LA GY G     K M                   
Sbjct: 412 ASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------------------ 453

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A+K  L     + +  AWR  +  ++QLW  +      
Sbjct: 454 ----------------------ALKMGLSEDELQPIVDAWRQANPNIVQLWHKVDNAATR 491

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------ 584
            +  G  ++ R       L   +    + I LPS RRL Y       +     +      
Sbjct: 492 AISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSITYWGQ 545

Query: 585 ---SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
               +  +  TYGGKL ENIVQA +RD+L E +      G+ IV+ +HDE+V + P    
Sbjct: 546 GVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEPINSG 605

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +V  +C+LM + P WA+GLP+ A GYE   Y+K
Sbjct: 606 TTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/702 (30%), Positives = 328/702 (46%), Gaps = 81/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  Y+ D   VK+ D      +P +++
Sbjct: 1   MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114
             L D++V+  A N+ FERI   K LG+     +  K W CT + A T GLP SL+    
Sbjct: 61  NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170
            L F +   K+ +GK LI  F   C  +  +        +H ++ W++F  Y KRDVE  
Sbjct: 121 VLGFKKQ--KLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             +  +L   P+S  E   + LDQ IND G  +D+D V +      + + +  +   +LT
Sbjct: 179 MAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      L+ +L L  G+    +S+  +  +L  S+      + +  R   + S+
Sbjct: 239 G--LENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDGE--IHEALSIRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K  ++   V SD R RG +QFYGA+RTGR+SG + Q QNLP+    +    +++    
Sbjct: 294 VKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSG 353

Query: 349 RGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
               +         + S+ +R+  I   G + +VAD + IEARV+AW+AGE W+I  FA 
Sbjct: 354 NFTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAG 413

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ FN P+ K  ++   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L+    + +  AWR  +  +  LW 
Sbjct: 464 ------------------------------AIQMGLVEDELKPIVDAWRNSNPNITSLWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLN 581
            +      VV+       ++   +  + +      + I LPS RRL Y     G+  +  
Sbjct: 494 RIDRAVKTVVK------TKQPIEIYGIGIFYQSGILFIKLPSGRRLAYVKPLIGENRFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQAISRDIL E M     + + IV+ VHDE+V
Sbjct: 548 ESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVV 607

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E P     SV  +C +M++ P+WAKGL L A+GYE + Y+K
Sbjct: 608 IEAP-NKVSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/689 (37%), Positives = 373/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCDIPI-NNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKK+VV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYGESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL ENI QA +RDIL   M      GY IVLTVH+E+++E PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/702 (31%), Positives = 324/702 (46%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y  A+   + L  YA D + VK+ D  +   +P ++L
Sbjct: 39  MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DET+   A N+ FER+   + LG      +    W C+ V +   GL  SL+    
Sbjct: 99  DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158

Query: 115 ALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            L   +   K+ EGK LI  FC       I+         + +  WQ F  Y KRDVEA 
Sbjct: 159 VLGLEKQ--KLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAE 216

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            ++ +RL   P+ +   D + LDQ INDRG ++D+D V +   +     +KL   + ++T
Sbjct: 217 IQIQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQIT 276

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G+++  + +  +   L  ++      +++  R   + S+
Sbjct: 277 N--LDNPNSVQQMKSWLCE-NGLEMETLGKKAVAEKLKETDGE--LNEVLSLRQQLAKSS 331

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV SD R RG  QFYGA+RTGR++G + Q QNLP+    +    + I    
Sbjct: 332 VKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNG 391

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             ET+     D     S  +R+  +   G K +VAD + IEARVL+W+AGE W+ K FA+
Sbjct: 392 DVETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFAS 451

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M           
Sbjct: 452 GGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---------- 501

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L     + +  AWR  +  + Q W 
Sbjct: 502 ------------------------------ALEMGLEEEELKPLVNAWRMSNPNITQFWW 531

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581
           D+       V+E  S     +              + IVLPS RRL Y   + G+  +  
Sbjct: 532 DVDRAAKQCVKENKSQETHSIE------FHCFSGMLFIVLPSGRRLAYVKPRIGENQFGG 585

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQAISRDIL   MK+     Y IV  VHDE++
Sbjct: 586 ESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSL--RHYRIVAHVHDEVI 643

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            ET   P  SV  +C  M++ P WAKGL L A+GYE   Y+K
Sbjct: 644 IET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/689 (37%), Positives = 373/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL   +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELECTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      +G+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/704 (29%), Positives = 321/704 (45%), Gaps = 90/704 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +G  +    W C+ V + T GLP SL +    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T++N              WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E+ ++L   P+S  E + + +DQ INDRG RID  LV    +       +  +   K
Sbjct: 173 VEMEITQKLERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQK 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +      L+ +L    G+++  +S+ ++  +L  +  T     ++  R   S 
Sbjct: 233 LTG--LANPNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQTT--TGKVHQVLSLRQLLSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S++ K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +  
Sbjct: 288 SSVKKYQAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347

Query: 347 LNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                 ++        + S  +R+  I S G    VAD + +EARV+AW++GE+W+ KAF
Sbjct: 348 QGNTTALSMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAF 407

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AN EDIY  + ++ F  P+ K  V+ E R  GK+ ELALGY G     K M         
Sbjct: 408 ANNEDIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMG-------- 459

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A    L       + + WR     ++Q 
Sbjct: 460 --------------------------------ATNLGLTEEELHSLVQMWRNASPHIVQF 487

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
           W D+ +     ++     +   +  +           + + L S R+L YS  K   +  
Sbjct: 488 WWDIDKAAKECIKSHLPQATHGIKFI------YRSGCMFLRLRSGRKLCYSKPKIGINRF 541

Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
            + +          +  R  TYG KL ENIVQA SRD+L E M+     G  +V+ +HDE
Sbjct: 542 GSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDE 601

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V + P    +S+  +  +MT+ P WA GL L A G+ +  Y+K
Sbjct: 602 AVIDAP--ANYSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 318/714 (44%), Gaps = 98/714 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            L IDIET S   L K GV+ Y+E   + + L AY+ D   V + D     ++P ++LQ 
Sbjct: 6   TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65

Query: 61  LRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLART 102
           L D++V+  A N+ FER+     L                  G  +    W C+ + +  
Sbjct: 66  LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQL 158
            GLP SL+     L   E   K++EGK LI  FCK      ++         +    W+L
Sbjct: 126 MGLPLSLEGVGAVLGLEEQ--KLKEGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWEL 183

Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           F  Y KRDVE    + K+L   P+ +   + + LDQ INDRG  +D+D+V     + A  
Sbjct: 184 FKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAIS 243

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           +  L   +  LTD  + +      ++ +L    G+D   + +  +  +L    +     D
Sbjct: 244 KATLMATMQDLTD--LENPNSVAQMKGWLAAK-GVDTDSLDKKAVIELLK--TVPTDVAD 298

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  R   + S++ K   +  AV  DGR RG  QFYGA+R+GRW+G + Q QNLP+    
Sbjct: 299 VLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHME 358

Query: 337 EEILTQTIQALNRGE----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +  + + I      E       +  G+ S+ +R+  I   G K  VAD + IEARV+A +
Sbjct: 359 DLDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHL 418

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKT 450
           A E W++K FA+  DIY  + +  F  P++K  +    R  GK+ ELALGY G      +
Sbjct: 419 AKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTS 478

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M                                         A+   L     + +  AW
Sbjct: 479 MG----------------------------------------ALDMGLAEEELQPLVDAW 498

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           RA +  ++Q W D+       ++E  +     +  +           + IVLPS RRL Y
Sbjct: 499 RAANPNIVQFWWDVDNAVKRAIKERTATKTHGIRFI------YKSAMLFIVLPSGRRLAY 552

Query: 571 SDVKGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
              +   +     +          +  R  +YG K  ENIVQAISRDILC  ++  T + 
Sbjct: 553 VKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALR--TLSH 610

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             IV  VHDE++ E       S+  +C  M + P W +GL L+A+GYE + Y+K
Sbjct: 611 CFIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/689 (37%), Positives = 373/689 (54%), Gaps = 24/689 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP +L   C  L   +  
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q  
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL   +        
Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELECTVRTA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586
           +      + ++      L +RR    + I LPS R + Y      +G+ +Y+  N+ + +
Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+   
Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/698 (30%), Positives = 332/698 (47%), Gaps = 79/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M K+ ID+ET S   L K GV+ YAE     I L AY+ DD  VK+ D      +P ++L
Sbjct: 1   MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DE++   A N+ FER+   + L   +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   KM EGKALI  F   CK +  +        +H +  W +F EY +RDVE   E+ 
Sbjct: 121 DKQ--KMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+   E + + +DQ INDRG  ID  LV    +     R++  +  ++LT   +
Sbjct: 179 KKLSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +++  ++S +   N     K+++  R   S S++ K 
Sbjct: 237 ENPNSPLQLKEWLNKK-GLEIDSLAKKDVESAIK--NAEGDIKEVLELRQELSKSSVRKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + +      + R RG +QFYGA+RTGR+SG + Q QNL R    +  L +++      ET
Sbjct: 294 DAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +      P  + S  +R+  I   G + +++D + IEARVLAWIA E W + AF NGEDI
Sbjct: 354 MEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDI 413

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T ++ F  P++K  ++   R  GK+  LA GYQG     K M               
Sbjct: 414 YCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                      ++  L     + +  +WR  +  ++ LW D+  
Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
               VV+       R       LV+   K  + I LPS RRL Y   K   +     +  
Sbjct: 494 VVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVV 547

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                  ++  +  +YGGK  ENIVQAI+RDIL E M    K G++IV+ +HDE+V E  
Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +   S+  +  +M+  P WA GL L A+G+E++ Y+K
Sbjct: 606 -SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 201/704 (28%), Positives = 308/704 (43%), Gaps = 90/704 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+  ++P  ++
Sbjct: 1   MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +   +    W C+ V + T GLP SL++    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN              WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E+ ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   K
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKK 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +      L+ +L    GI    +S+ ++  +L  +  T     ++  R   S 
Sbjct: 233 LTG--LANPNSPLQLKDWLH-QQGIKTDSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S+I K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +  
Sbjct: 288 SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347

Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                           + S  +R+  I S      VAD + +EARV+AW++ E W+ ++F
Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M         
Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------- 459

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A    L       + + WR     ++Q 
Sbjct: 460 --------------------------------ATNLGLTDDELPPLVQMWRNASPHIVQF 487

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
           W D+ +     ++     +         +        + + L S R L Y   K   +  
Sbjct: 488 WWDVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRF 541

Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
            + +          +  R  TYG KL ENIVQA SRD+L   M+     G  +V+ +HDE
Sbjct: 542 GSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDE 601

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V + P     S+ T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 602 AVIDAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 331/701 (47%), Gaps = 76/701 (10%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           M K L IDIET S   L K GV+ Y E     I L AYA+DDEP+ + D  +   +P  +
Sbjct: 1   MKKILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQV 60

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L D  V+  A+N+ FER    K     +P ++W CTSV A T GLP +L      L 
Sbjct: 61  TKDLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLG 120

Query: 118 FSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATREL 173
                 K   GK LI  F   CK +  +        +H    W+ F +YCK+DV   R +
Sbjct: 121 LDAQ--KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAI 178

Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            K++   P+ + E  LW LDQ IND G R+D  LV +  +   Q   +LD +  +LT   
Sbjct: 179 RKKIEKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG-- 236

Query: 232 IRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           + +   T  L ++L    G+ + + + +  +  +L  +   +    ++  R   S ++  
Sbjct: 237 LDNPNSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTK 295

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SD R RG LQF GA+RT RW+G + Q QNLP+ +  +  + + +    + 
Sbjct: 296 KYEAMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKF 355

Query: 351 ETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E I      P  + S  +R+  I S+G + +V+D + IEARV+AW+AGE W++K F +  
Sbjct: 356 EAIELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHG 415

Query: 407 DIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            IY  + +  F+ PI++++K    R  GK+ ELALGY G     + M             
Sbjct: 416 KIYEASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMG------------ 463

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A+K  L       +  AWR  +  +++LW D+
Sbjct: 464 ----------------------------ALKMGLDADELPDLVTAWRNSNPKIVKLWWDV 495

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGD 576
            +     V+E   +  +       +        + I LPS R+L Y           +  
Sbjct: 496 DKAAMTAVREHMPVRIQ-----YGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPA 550

Query: 577 CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
            +Y  ++       R  TYG KL ENIVQA++RD L   M      GYDI + VHDE++ 
Sbjct: 551 LTYEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVIL 610

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + P+T   ++  +  +M++   WA GLPL+A+GYE + Y+K
Sbjct: 611 DVPNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/702 (29%), Positives = 316/702 (45%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L  DIET S   L K GV+ Y  A+   I L AY+ D   VK+ D      +P  +L
Sbjct: 4   IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V+  AHN+ FERI F + LG      I  + W CT   A   GLP SL     
Sbjct: 64  SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEAT 170
            L   +   KM EGK LI  FC     +           ++  + W+ F  Y  RDVEA 
Sbjct: 124 VLGLGKQ--KMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAE 181

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ ++L   P+ D   D + L + IND G ++D+D V +   +      KL + + ++T
Sbjct: 182 MEIEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEIT 241

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G++   + +  +  +L   +  +   +++  R   + S+
Sbjct: 242 E--LDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELLK--DAPEHLAEVLKLRQQLAKSS 296

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV SDGR+RG   F GA+RTGR+S  + Q QNLP+    +    ++I    
Sbjct: 297 VKKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNG 356

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             E +     D     S  +R+  +   G K +VAD + IEARVL+W+AGE W+ + FAN
Sbjct: 357 DSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFAN 416

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     K M +      ++ 
Sbjct: 417 GGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 476

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            +                                         +  AWRA +  +++ W 
Sbjct: 477 LK----------------------------------------PLVNAWRASNPNIVKFWW 496

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+       ++E      ++   V  +        + IVLPS R+L Y       +    
Sbjct: 497 DVDREVKKCIKE------KKSQEVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGG 550

Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQAISRDIL   MK  T +   IV  VHDE++
Sbjct: 551 ESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMK--TLSTCSIVAHVHDEVI 608

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E       S+  +C  M + P WAKGL L A+GYE   Y+K
Sbjct: 609 IEA--DQSLSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/698 (28%), Positives = 310/698 (44%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + G + YA+     + L  YA D  PVK+ D T+   +PS ++
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPP-YDCTR---ANHVQAWQLFGEYCKRDVEATRELF 174
                K+  GK L+  FC     +    + TR    +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQ--KITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++    P+   E + + +DQ INDRG RID  LV    +   +   +  +   +LT   +
Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G++   +++ ++  +L  +  T     ++  R   S S++ K 
Sbjct: 237 ANPNSPLQLKNWLH-QQGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR--- 349
             + +A+  DG + G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353

Query: 350 -GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G    VAD + +EARV+AW++GE+W+  AFA  EDI
Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M               
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A K  L       + + WR     ++Q W D+ +
Sbjct: 460 --------------------------ATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                ++     +         +        + + L S R L Y   K   +   + +  
Sbjct: 494 AAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  TYG KL ENIVQA SRD+L   M+     G  +V+ +HDE V + P
Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                S+ T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 608 TDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 303/718 (42%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  YA D   V++ D      +P D+L
Sbjct: 1   MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98
             L DE+V   A N+ FER+   + L                       +    W C+ +
Sbjct: 61  DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154
            +   GLP SL+ A   L       KM+EGK LI  FC    ++            +   
Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQ--KMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W LF  Y KRDVE    + +RL   P+ +   D + LDQ INDRG  ID  L      +
Sbjct: 179 KWTLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVI 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            A+ R  L   +   T   + +      +  +L    G+    + +  ++ +L      +
Sbjct: 239 DARSRDSLMAVLKGKTG--LENPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLK--TAEE 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++L R   + S++ K   +      D R RG  QFYGA+RTGR++G   Q QNLP+
Sbjct: 294 PLRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E +         + S  +R+  +   G K VV+D + IEARV
Sbjct: 354 NHLPDLAEARELVRQGNYEALELLYDSIPDVLSQLIRTAFVPRKGMKFVVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446
           L+W+AGE W++  FA   DIY  + +  F  P++K  V+   R  GK+ ELALGY G   
Sbjct: 414 LSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A+   L       +
Sbjct: 474 ALKAMG----------------------------------------ALDMGLTENELYPL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            ++WR+ +  ++  W  +       ++E   + A        +        + I LPS R
Sbjct: 494 VQSWRSANPHIVDFWWQVDATVKTAIKEQIPMRA------GCIRFLCQSGMLFIQLPSGR 547

Query: 567 RLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           RL Y   + G+  +           AT +  R  +YG K  ENIVQ ISRDILC  M+  
Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAMQ-- 605

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           T     IV  VHDE++ E       SV  +C  M + P WA+GL L+A+GYE + Y+K
Sbjct: 606 TLRCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQK 661


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/699 (29%), Positives = 324/699 (46%), Gaps = 74/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET     + KVG + Y E     I L AYA++DEPV++ D  +   +P  + 
Sbjct: 1   MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  ++  A N+ FE    KK L   I ++ W CT V +   GLP SL      L F
Sbjct: 61  TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            E   KM+EGKALI  FCK    +            +  + W++F +Y K+DVE  R + 
Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P ++ E+ LW LDQ INDRG   D++L+ K  E      K+L ++  +LT   +
Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ ++    G ++  +++ ++ +++  S   ++ K ++  R   + ++I K 
Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESKDEKV-KKILELRQLMAKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +    +      + + 
Sbjct: 298 ETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFDK 357

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +           S  +R+  I   G + +VAD + IEARV+AW AGE W++  F N  DI
Sbjct: 358 VEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNNNGDI 417

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +K F  P++K  ++   R  GK+ ELALGY G      +M     +   +    V
Sbjct: 418 YCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKKNIPEDELPGLV 477

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
           K      DW  A  H                                   + + W D+ +
Sbjct: 478 K------DWRDASPH-----------------------------------ITKFWWDVDK 496

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------CS 578
                ++E  ++  +       L        + I LPS R+L Y   K +         +
Sbjct: 497 AAKKAIRERTTVVLQF-----GLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDKPIIT 551

Query: 579 YLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           Y      + Q     TYG K+ ENIVQA +RD L   M+     G+ IV+ VHDE++ + 
Sbjct: 552 YEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDELICDV 611

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P     +V  +C +  +   WA GLPLKA+GYE   Y K
Sbjct: 612 PKGK-GTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/703 (31%), Positives = 330/703 (46%), Gaps = 78/703 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L ID+ET S   +   G + Y E     I L AYA++DEPV++ D      +PS++ 
Sbjct: 5   IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  ++  A N+ FER   K       P ++W CT V A T GLPSSL     AL F
Sbjct: 65  YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174
            E   KM+EGKALI  FCK    +            + ++ W+ F EYCKRDVE  RE+ 
Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             L        E+ LW LDQ INDRG   DL L+ +  E      ++L +  ++LT   +
Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG--L 242

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSGSAI 289
            +      ++ ++    G ++  +++ ++  ++  +   N +++ K L L R   + ++I
Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLEL-RQLMAKTSI 301

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K +T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +    +      +
Sbjct: 302 KKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGK 361

Query: 350 GETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            + +           S  +R+  I   G + +V+D + IEARV+AW AGE W++  F+  
Sbjct: 362 FQEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTH 421

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ F   I+ + K  E R  GK+ ELALGY G      +M     +  ++  
Sbjct: 422 GKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEELP 481

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
             VKS      W  A                                   +  + + W D
Sbjct: 482 GLVKS------WRNA-----------------------------------NPNITKFWWD 500

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------- 576
           + +    V++E  +++ +       L        + I LPS R+L Y   K +       
Sbjct: 501 VDKAAKKVIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSG 555

Query: 577 --CSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
              +Y      + Q  R  TYG KL ENIVQA SRD L E M    K GYDIV+ VHDE+
Sbjct: 556 DKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHDEV 615

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V + P     +V  +  LM +   WA GLPLKA+GYE   Y+K
Sbjct: 616 VLDIPKDRA-TVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 192/716 (26%), Positives = 305/716 (42%), Gaps = 98/716 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L ID+ET S   + K G + YAE     I L   + D+ PV ++D      +P+++L
Sbjct: 2   MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID------------------IPSKRWICTSVLA 100
             L DE ++  A N+ FER+     L                     +    W CT + +
Sbjct: 62  AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAW 156
              GLP SL+     L   +   KM+EGK LI  FC   K +  +         H    W
Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQ--KMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKW 179

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           + F  Y +RDVE    + +RL   P+ D     + +DQ IND G  +D+D+V        
Sbjct: 180 ETFKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDE 239

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + +  L   +  +T+  + +      ++ +L    G++   + +  +  ++  ++     
Sbjct: 240 RSKSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLIKETD--GDI 294

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +  RL  + S++ K   +  AV  DGR  G  QFYGA+R+GRW+G + Q QNLP+  
Sbjct: 295 SKALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNH 354

Query: 335 RSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            S+    + +      +T+     D     S  +R+  IA  G K +V+D + IEARVLA
Sbjct: 355 MSDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLA 414

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
            +AGE W+ K FA G+DIY  + ++ F  P+ K  ++   R  GK+ ELALGY G     
Sbjct: 415 HLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGAL 474

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K+M                                         A++  L     + +  
Sbjct: 475 KSMG----------------------------------------ALEMGLTEEELQPLVD 494

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           +WR+ +  +   W ++       ++         +              + I  PS R L
Sbjct: 495 SWRSSNPMITAFWWNVDNAIKTAIKMHIPTEVNGIHFC------YKSGMLLIKRPSGRVL 548

Query: 569 VYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K   +              T +  R  +YG K  ENIVQA+SRDILC  MK  T 
Sbjct: 549 SYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMK--TL 606

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               IV  VHDE++ E   +    +  +C  M ++  W  G+ L+A+GYE   Y+K
Sbjct: 607 RHCFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRADGYETNFYKK 660


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 192/716 (26%), Positives = 317/716 (44%), Gaps = 98/716 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  + IDIET S   L K GV+ Y  ++   I L  Y+ D   V + D  +   +P +++
Sbjct: 4   IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             L DE +   A N+ FER+   + L                  G  +    W C+ V +
Sbjct: 64  MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAW 156
              GLP  L  A   L   E   K+ EGK LI  FC     +            + +  W
Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQ--KLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKW 181

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           ++F +Y KRDVE    +  +L   P+ +   + + LDQ INDRG  +D+D+V        
Sbjct: 182 EMFKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDE 241

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + +  L + + ++T   + +      ++ +L    G+++  + +  + ++L  +   +  
Sbjct: 242 KSKAVLADKMQEMTG--LENPNSVQQMKQWLS-CNGLEMDSLGKKEVAAVL--NTAPEPL 296

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           K ++  R   + S++ K   ++ AV SDGR RG   FYGA+R+GRW+G + Q QNLP+  
Sbjct: 297 KTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNH 356

Query: 335 RSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            S+    +++      E +     D     S  +R+  +   G + +V+D + IEARVL+
Sbjct: 357 MSDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLS 416

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448
            +AGE W+   FA+G DIY  + ++ F  P++K  V+   R  GK+ ELALGY G     
Sbjct: 417 HLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 476

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K+M                                         A+   L     + +  
Sbjct: 477 KSMG----------------------------------------ALDMGLEEDELKPLVD 496

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            WR  +  +++LW D+       V++      R  +++  +        + I LPS R L
Sbjct: 497 MWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPSGRCL 550

Query: 569 VYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K   +              T +  R  +YG K  ENIVQAISRDIL   ++  T 
Sbjct: 551 SYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIR--TL 608

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   I   VHDE++ E   +   S+  +C  M + P W +G+ L+A+GYE + Y+K
Sbjct: 609 SHCFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 201/704 (28%), Positives = 310/704 (44%), Gaps = 90/704 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN              WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E+ ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +      L+ +L    GI    +S+ ++  +L  +  T     ++  R   S 
Sbjct: 233 LTG--LANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S++ K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +  
Sbjct: 288 SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347

Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                           + S  +R+  I S      VAD + +EARV+AW++ E W+ ++F
Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M         
Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------- 459

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A K  L       + + WR     ++Q 
Sbjct: 460 --------------------------------ATKLGLTDDELPPLVQMWRNASPHIVQF 487

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
           W D+ +     ++     +         +        + + L S R L Y   K   +  
Sbjct: 488 WWDVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRF 541

Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
            + +          +  R  TYG KL ENIVQA SRD+L E M+     G  +V+ +HDE
Sbjct: 542 GSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDE 601

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V + P     S+ T+  LMTK P WA GL L A G+ +  Y+K
Sbjct: 602 AVIDAPFNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/698 (30%), Positives = 334/698 (47%), Gaps = 79/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +     I L AY  D+   ++ D  +   +P ++L
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+ ++  A N+ FER+   K LG  + +K W CT+VLA + GLP SL+     LN 
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            E   KM+EG  LI  F   CK +  +   +    +H  + W+LF  YCKRDVE  + + 
Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            RL   PL + E+  + LDQ INDRG  +D  LV +        ++++ +   +L+   +
Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+ +  + +  +   L  ++   L  +++  RL  S +++ K 
Sbjct: 237 ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +   V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+    + ET
Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFET 353

Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +     +  G+ S+ +R+  +   G + +VAD A IEARVLAW++GE W+++ F  G DI
Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F  P++K   +   R  GK+ ELALGY G       M               
Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L     + +   WR+ +  ++  W ++ +
Sbjct: 460 --------------------------ALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
               V +       R    +  LV+      + I LPS R+L Y   +   +        
Sbjct: 494 VAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                 + +  R  TYG KL ENIVQ I+RD+L  GM    + G  IVL VHDE V E  
Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +C L+   P WA+GLPL+A+GY  + Y+K
Sbjct: 608 EE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 199/704 (28%), Positives = 308/704 (43%), Gaps = 90/704 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+  ++P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +   +    W C+ V + T GLP SL++    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN              WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E+ ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +      L+ +L     I    +S+ ++  +L  +  T     ++  R   S 
Sbjct: 233 LTG--LANPNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S+I K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +  
Sbjct: 288 SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347

Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                           + S  +R+  I S      VAD + +EARV+AW++ E W+ ++F
Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M         
Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------- 459

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A    L       + + WR     ++Q 
Sbjct: 460 --------------------------------ATNLGLTDDELPPLVQMWRNASPHIVQF 487

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
           W D+ +     ++     +         +        + + L S R L Y   K   +  
Sbjct: 488 WWDVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRF 541

Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
            + +          +  R  TYG KL ENIVQA SRD+L E M+        +V+ +HDE
Sbjct: 542 GSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDE 601

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V + P     S+ T+  LMT+ P WA GL L A G+ +  Y+K
Sbjct: 602 AVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/698 (30%), Positives = 334/698 (47%), Gaps = 79/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +     I L AY  D+   ++ D  +   +P ++L
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+ ++  A N+ FER+   K LG  + +K W CT+VLA + GLP SL+     LN 
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            E   KM+EG  LI  F   CK +  +   +    +H  + W+LF  YCKRDVE  + + 
Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            RL   PL + E+  + LDQ INDRG  +D  LV +        ++++ +   +L+   +
Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+ +  + +  +   L  ++   L  +++  RL  S +++ K 
Sbjct: 237 ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +   V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+    + ET
Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVET 353

Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +     +  G+ S+ +R+  +   G + +VAD A IEARVLAW++GE W+++ F  G DI
Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F  P++K   +   R  GK+ ELALGY G       M               
Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L     + +   WR+ +  ++  W ++ +
Sbjct: 460 --------------------------ALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
               V +       R    +  LV+      + I LPS R+L Y   +   +        
Sbjct: 494 VAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                 + +  R  TYG KL ENIVQ I+RD+L  GM    + G  IVL VHDE V E  
Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +C L+   P WA+GLPL+A+GY  + Y+K
Sbjct: 608 EE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/700 (32%), Positives = 336/700 (48%), Gaps = 77/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY+E     I L AYA DDE V++ D      +P+++L
Sbjct: 1   MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + + D TV+  A+N+ FER    K   I +P ++W CTSV A   GLP  L      L  
Sbjct: 61  KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                KM+EGKALI  F   CK +  +         H    W  F +YCK+DVE  RE+ 
Sbjct: 121 --QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   PL   E++LW LDQ IND G  ID +LV    +     + +L E+ V+LT   +
Sbjct: 179 KKLEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVRLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L L  G+++  +++  +++++S     ++ K L+  R A S +++ K 
Sbjct: 237 ENPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVENPEV-KRLLELRRAMSKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V SD R+RG LQFYGASRTGRW+G + Q  NLPR    +  + + +    + E 
Sbjct: 295 EAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEA 354

Query: 353 IADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         + S  +R+  I S G + VVAD + IEARV+AW+AGE W++  F +   I
Sbjct: 355 LEVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  PI+ + K    R  GK+ ELALGY G       M               
Sbjct: 415 YEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A++  L       +  AWR  +  +++LW  +  
Sbjct: 461 --------------------------ALEMGLTEDELPELVSAWREANPKIVKLWWGIEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577
                V+E   +  +       L     K  + I LPS R L Y   K            
Sbjct: 495 AAIKAVKEKAVVKMQ-----HGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQL 549

Query: 578 SYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           +Y  T   + Q  R  TYGGKLTENI+QAI+RD L   M    + GY I   VHDE++ +
Sbjct: 550 TYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILD 609

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P     S+  + ++M ++  WA GLPL A+ +E   Y+K
Sbjct: 610 VPI-ATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 319/707 (45%), Gaps = 85/707 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIET SP  L K GV+ Y E     + L +Y+ D  PV++ D     +MP ++L
Sbjct: 1   MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
             L D  V+  AHN+ FER+     L            +  ++W CT V +   GLP SL
Sbjct: 61  AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFGEYCKR 165
                 L     + K   G+ LI +FC  +  S      +    +     W  F +Y +R
Sbjct: 121 DAIAAVLKL--DVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE  + +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             KLT   + +      L+ +L    G +L  +++  + S L  +      K+++  R  
Sbjct: 239 AQKLTG--LDNPNSPIQLKQWLATR-GCELESLAKAEVDSALDTATGA--VKEVLELRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            + S++ K   +     SDGR RG +QFYGA RTGR++G + Q QNLPR    +    +T
Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353

Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +      + +           S  +R+  I S G + +VAD + IEARV+AW+AGE   +
Sbjct: 354 LVRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTL 413

Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +AF  G+D+Y  T ++ F  P++K  V+ E R  GK+  LA GY G     K M      
Sbjct: 414 EAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG----- 468

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+   L     + +  AWR  +  +
Sbjct: 469 -----------------------------------ALNMGLAEHELKPIVDAWRQANPHI 493

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           + LW D+ E     +      S+R+   +  L          I LPS RRL Y   +   
Sbjct: 494 VGLWADVEEAAIAAI------SSRQPIRLRNLRFSVESGIFFIELPSGRRLAYVQPRLGE 547

Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +     +          +  +  TYGGKL ENIVQAI+RD+L  GM    K G+ IV+ V
Sbjct: 548 NRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEIV + P+   F+V   C+LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 608 HDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/708 (31%), Positives = 317/708 (44%), Gaps = 89/708 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LFIDIET SP  L   GV+ YA+     + L  Y+ D  PV++ D      +P  +L
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108
             L D  V+  A N+ FERI     L             +   +W CT V +   GLP S
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCK 164
           L      L+    + K   GK LI +FC     S           A+    W+ F  Y +
Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  RL   PL   E D + LDQ +ND G R+D  LV        Q R     
Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +LT   + +      L+ +L    G  L  +++  + + L     T   ++++L R 
Sbjct: 239 RAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALD--TATGQVREVLLLRG 293

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   +      DGR RG LQFYGA RTGR++G + Q QNLPR    +    +
Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353

Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           ++      E +           S  +R+  I ++G + VVAD + IEARV+AW+AGE   
Sbjct: 354 SLVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTT 413

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    K M     
Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A++  L  +  + +  AWRA +  
Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPS 493

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V+QLW D+            +IS R+  +V  L        + I LPS RRL Y   K  
Sbjct: 494 VVQLWADINAAAIE------TISTRQPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547

Query: 577 CSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
            +     +          +  +  TYGGKLTENIVQA++RD+L   M    + G+ IV+ 
Sbjct: 548 ENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMH 607

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEIV E   T   +V  +C LM+  P WA GLPL+A+GY    Y K
Sbjct: 608 VHDEIVVE---TATATVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/708 (31%), Positives = 322/708 (45%), Gaps = 89/708 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LF+D+ET SP  L K GV+ YAE     + L  Y+ D  PVK+ D      +P++++
Sbjct: 1   MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108
           + L D  V   A N+ FER+     L             +   +W CT V +   GLP S
Sbjct: 61  EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCK 164
           L+     L+    + K   GK LI RFC  +  S           A+    W+ F  Y +
Sbjct: 121 LEQVATVLDLP--VRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNR 178

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  RL   P+ + E   + LDQ IND G R+D  LV    +   Q R     
Sbjct: 179 RDVEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLA 238

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +LT   + +      L+ +L    G  L  +++  + + L  +      ++++  R 
Sbjct: 239 RAQELTG--LENPNSPIQLKDWL-TAHGTPLQSLTKDEVAAALDTATGE--VREVLQLRG 293

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K  T+      DGR RG LQFYGA RTGR++G + Q QNLPR    +    +
Sbjct: 294 ELAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEAR 353

Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            +      E +           S  +R+  + ++G + VVAD + IEARV+AW+AGE   
Sbjct: 354 DLVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATT 413

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    K M     
Sbjct: 414 LQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A++  L  +  + +  AWRA +  
Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           V+QLW D+       +      S R+   V  L        + + LPS RRL Y   K G
Sbjct: 494 VVQLWADINAAAIEAI------STRQPTGVGALTFTVESGIMFVRLPSGRRLAYVKPKLG 547

Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +  +  TA          +  +  TYGGKLTENIVQA++RD+L  GM    + GY IV+ 
Sbjct: 548 ENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMH 607

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEIV E   T   +V  +C LM   P WA GLPL A+GY    Y K
Sbjct: 608 VHDEIVVE---TATATVDEICELMATAPDWAAGLPLAADGYACDFYMK 652


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/708 (31%), Positives = 317/708 (44%), Gaps = 89/708 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LFIDIET SP  L   GV+ YA+     + L  Y+ D  PV++ D      +P  +L
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108
             L D  V+  A N+ FERI     L             +   +W CT V +   GLP S
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCK 164
           L      L+    + K   GK LI +FC     S           A+    W+ F  Y +
Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  RL   PL   E D + LDQ +ND G R+D  LV        Q R     
Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +LT   + +      L+ +L    G  L  +++  + + L     T   ++++L R 
Sbjct: 239 RAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALD--TATGQVREVLLLRG 293

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   +      DGR RG LQFYGA RTGR++G + Q QNLPR    +    +
Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353

Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           ++      + +           S  +R+  I ++G + VVAD + IEARV+AW+AGE   
Sbjct: 354 SLVRTGNYDAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATT 413

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    K M     
Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A++  L  +  + +  AWRA +  
Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           V+QLW D+       +      S R   +V  L        + I LPS RRL Y   K G
Sbjct: 494 VVQLWADINAAAIEAI------STRLPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547

Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +  +  TA          +  +  TYGGKLTENIVQA++RD+L  GM    + G+ IV+ 
Sbjct: 548 ENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVMH 607

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEIV E   T   +V  +C LM   P WA GLPL A+GY    Y K
Sbjct: 608 VHDEIVVE---TATATVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 319/714 (44%), Gaps = 104/714 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ETRS   + K GV+ YAE     I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98
             L DE+V+  A N+ FER+   + L                       +    W CT V
Sbjct: 61  DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
            +   GLP SL      L   E   KM EGKALI  F         ++ T A     W L
Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQ--KMNEGKALIRYFSTPPF----HEPTGA----KWDL 170

Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           F  Y +RDVE    + KRL   P+     + ++LDQ INDRG R+D+ LV    ++  + 
Sbjct: 171 FKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRT 230

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           ++KL + +  LT   + +      ++ +L    G++   + + ++ ++L+  N+    K+
Sbjct: 231 KEKLTDRLKTLT--SLENPNSVTQMKAWL-KEQGVETESLDKKSVTALLA--NVPDPLKE 285

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  R   + S++ K   +   V SDGR RG  QFYGA+RTGR+SG   Q QNLP+   +
Sbjct: 286 VLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLA 345

Query: 337 EEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +    +++        +         + S  +R+  I+  G+K +VAD + IEARVL+W+
Sbjct: 346 DLEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADFSAIEARVLSWL 405

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKT 450
           A E W++  FAN  DIY  T  + F+  + K   +   R  GK+ EL+ GY G     K 
Sbjct: 406 AKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGALKA 465

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                                     A++  +       +  AW
Sbjct: 466 FG----------------------------------------ALESGMKEEELNPLVDAW 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           RA +  ++  W  +       ++E      R       +        + I LP  RRL Y
Sbjct: 486 RAANPNIVDFWWAVDRATKDCIKE------RSTKVTHGIRFIYQGSMMFIELPCGRRLAY 539

Query: 571 SDVK-GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
              + G+  +   +        + +  R  +YG KL EN+ QAISRDILC  M+  T   
Sbjct: 540 VKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQ--TLRT 597

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            DIV  VHDE++ E  +    S+  +C  M + P WA GLPL+A+G+E + Y+K
Sbjct: 598 MDIVAHVHDELIIECDE--RVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/699 (32%), Positives = 332/699 (47%), Gaps = 76/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+D+EP+K+ D  +  A+P +++
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K     +P  +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
           SE   K +EGKALI  F   CK +  +         H    W+ F  YC +DVE  R + 
Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            R+    L   E++LW LDQ INDRG RID DLV        Q +  L  +  +LT   +
Sbjct: 179 NRISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L+ +L    G+ +  +++  ++ ++  ++   + + L L R   + +++ K 
Sbjct: 237 PNPNSTAQLKTWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++    +T+      E 
Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           I    G    + S  VR+  I S G +  V+D + IEARV+AW+AGE W++  F     I
Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  P++ ++K    R  GKV ELALGYQGG      M               
Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       + KAWR  ++ ++Q W D+  
Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577
                V+E   +  +       L        + + LPS RRL Y+  K +          
Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           +Y     + +  R  TYGGKL ENIVQA++RD L   +      GY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P      +  + ++M +   WAKGLPL A+G+    Y+K
Sbjct: 610 PRGKN-ELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/720 (29%), Positives = 323/720 (44%), Gaps = 108/720 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D  +   +P  +L
Sbjct: 17  LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL----------------GIDIPSKRWICTSVLART 102
             L DETV   A N+ FERI   + L                G+ +    W CT + + T
Sbjct: 77  SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSAT 136

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------H 152
            GLP SL+N  + L   +   K+ EGK LI  FC       P + T+ N           
Sbjct: 137 LGLPMSLENVGIVLGLDKQ--KLTEGKNLIKYFC------LPCNPTKVNGGRTRNKYFHD 188

Query: 153 VQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            + W+ F  Y KRDVE    + ++L   P+ D     + LDQ INDRG  ID   V    
Sbjct: 189 KEKWEQFKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAI 248

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           +L  + +  L  ++ ++T   + +      +R +L    G+++  + +  +   L    +
Sbjct: 249 KLDLEVKTHLMSELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGKKEVAKELK--TV 303

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            +   +++  R   + S++ K   +  A   D R RG  +FYGA+RTGR++G + Q QNL
Sbjct: 304 GKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNL 363

Query: 331 PRQERSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           P+    +    +++      E +     D     S  +R+  I   G K +VAD + IEA
Sbjct: 364 PQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEA 423

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGG 444
           RVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K  V+   R  GK+ ELALGY G 
Sbjct: 424 RVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGS 483

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               K M                                         A+   L     +
Sbjct: 484 VGALKAMG----------------------------------------ALDMGLTEDELQ 503

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +  AWR+ +  V  LW D+       V E  S+          +V       + I LPS
Sbjct: 504 PLVDAWRSSNPMVTTLWWDVDRAVKQCVHEHVSVRTH------NIVFTYKSGFLIIKLPS 557

Query: 565 SRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
            R L Y   + + +              T +  R  +YG K  ENI QAI+RDIL   M+
Sbjct: 558 KRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQ 617

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             T   Y IV  VHDE + ET  +   SV ++C LM + P WA+GL L+A+GYE + Y+K
Sbjct: 618 --TLKEYRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/697 (29%), Positives = 322/697 (46%), Gaps = 77/697 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S   L   GV+ Y+      I L AY+ DDE     D       P + ++
Sbjct: 3   RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D+TV   A N+ FER  F          + W CT+V A    LP SL+     L   
Sbjct: 63  MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLD 122

Query: 120 EHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +   KM EGK LI  FC        +         +  + W+ F  YC RDV+  +++ +
Sbjct: 123 KQ--KMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQ 180

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           RL   P+   E++++ LDQ INDRG  +D +LV          ++       +LT   + 
Sbjct: 181 RLAKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG--LE 238

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L+++L    G+++  +++ T+K +   +      ++++  RLA+S +++ K  
Sbjct: 239 NPNSVSQLKLWLKEK-GLEVDSLAKDTVKDLSMKA--EGDVQEVLKLRLATSKTSVKKYE 295

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +  +V ++ R+ G LQFYGA+RTGRW+G + Q  NLP+    +  L + + +  R E +
Sbjct: 296 AIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEV 355

Query: 354 ----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                    + S+ +R+  +A  G + +++D + IEARVLAW+AGE+W+++ F     IY
Sbjct: 356 ELFYESTPNVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGKIY 415

Query: 410 VTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
             + +  F+  I++++K    R  GK+ ELALGY G      +M                
Sbjct: 416 EASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMG--------------- 460

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                    A+K  L       +   WR+ +  +   W  + E 
Sbjct: 461 -------------------------ALKMGLTEEELPGLVSTWRSANPHITAFWWAVDEA 495

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN------ 581
               V++      ++ + V R+        + + LPS R+L Y   +   +         
Sbjct: 496 AVTAVRD------KKPSKVGRVSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREGLTY 549

Query: 582 ---TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                + + MR  TYG KL ENIVQA SRDIL E M    K G+DIV  VHDE+V E PD
Sbjct: 550 EGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLEVPD 609

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               SV  +  +M  NP W +GLPLKA G+E+  Y+K
Sbjct: 610 GKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/699 (31%), Positives = 329/699 (47%), Gaps = 76/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+DD+PVK+ D  +   +P ++L
Sbjct: 1   MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K   + +   +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           S    K + GKALI  F   CK +  +         +  + W+ F  YC +DVE  R + 
Sbjct: 121 SAQ--KDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            R+      + E  LW LDQ INDRG RID+DLV        Q +  L  +  KLT   +
Sbjct: 179 NRISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L+ +L    G+ +  +++  ++ ++ ++N  +    ++  R   + +++ K 
Sbjct: 237 PNPNSTAQLKKWLEEK-GLTISSLAKDKIEELIENTN-DETVHRVLRLRQEMAKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ +  +    + +      E 
Sbjct: 295 LAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEA 354

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           I    G    + S  VR+  I S G +  V+D + IEARV+AW+AGE+W+++ F     I
Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  P++ ++K    R  GKV ELALGYQGG      M               
Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       + KAWR  ++ +++ W D+  
Sbjct: 461 --------------------------ALNMGLAEGELPELVKAWRTANKKIVKFWYDVEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577
                V+E   +  +       L        + + LPS RRL Y+  K +          
Sbjct: 495 AAIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEAL 549

Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           +Y     + +  R  TYGGKL ENIVQA +RD L   +      GY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDV 609

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P      +  + ++M +  SWAKGLPL A+G+    Y+K
Sbjct: 610 PRGKN-ELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/699 (32%), Positives = 331/699 (47%), Gaps = 76/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+D+EP+K+ D  +  A+P ++L
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K     +P  +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
           SE   K +EGKALI  F   CK +  +         H    W+ F  YC +DVE  R + 
Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            R+        E++LW LDQ INDRG RID DLV        Q +  L  +  +LT   +
Sbjct: 179 NRISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L+ +L    G+ +  +++  ++ ++  ++   + + L L R   + +++ K 
Sbjct: 237 PNPNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++    +T+      E 
Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           I    G    + S  VR+  I S G +  V+D + IEARV+AW+AGE W++  F     I
Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  P++ ++K    R  GKV ELALGYQGG      M               
Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       + KAWR  ++ ++Q W D+  
Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577
                V+E   +  +       L        + + LPS RRL Y+  K +          
Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           +Y     + +  R  TYGGKL ENIVQA++RD L   +      GY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P      +  + S+M +   WAKGLPL A+G+    Y+K
Sbjct: 610 PRGKN-ELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/698 (29%), Positives = 335/698 (47%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP K+ D      MP +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D++V+  A N+ FER    +  G+ +  + W CT+V A    LP SL+    ALN 
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  FC     +           ++  + W+LF  YC RDV+  +++ 
Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P+ D E++L+ +DQ INDRG  +D +L+          ++   +   +++   +
Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI++  +++  ++ ++  +       +++  RL+ S +++ K 
Sbjct: 237 ENPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEKTEGE--VSEMMKLRLSMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L ++I    R + 
Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         + S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     I
Sbjct: 354 VELLYDSTPEVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T +K F+ PI++++K    RA GKV  LA  Y G      +M +             
Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL------------ 461

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                    F  +++L G     + ++WR  +  ++  W ++  
Sbjct: 462 ------------------------NFVEEEELKG-----LVQSWRTANPHIVNYWYEIDG 492

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                V+E      R++  V R+ +      + I LPS R L Y   +   +   + +  
Sbjct: 493 AVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  +YG K  ENIVQA +RD+L E M    K G+DIV  +HDE+V E P
Sbjct: 547 YEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 607 EGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/700 (32%), Positives = 335/700 (47%), Gaps = 74/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y +     I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGKALI  FCK       +         + ++ W  F EYCK+DV   RE+ 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 175 KRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L      ER+  LW LDQ IND G ++D +L+    E   +  +KL ++ +K+T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G ++  +++ ++  IL   +   + + L L +L  S ++I K 
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKL-MSKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      + 
Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           I         + S  +R+  I S G + +V+D + IEARV+AW AGE W++  F +   I
Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHGKI 417

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F  PI+ + K    R  GK+ ELALGY G      +M +      ++  Q  
Sbjct: 418 YEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGLDEEELQ-- 475

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              +T+ +     +   W  D+  + A+KD+ I      +K                   
Sbjct: 476 PLVTTWRNANPNITKFWWDVDKAAKKAIKDRTIVKLQHGIK------------------- 516

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577
                                      +   + I LPS RRL Y   K +          
Sbjct: 517 ------------------------FIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDKI 552

Query: 578 SYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           +Y      + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+ VHDE+V +
Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 202/698 (28%), Positives = 335/698 (47%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP ++ D      +P +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +YL D++V+  A+N+ FER    +  G+ +  + W CT V A    LP SL+    ALN 
Sbjct: 61  EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  FC     +           ++  + W+LF  YC RDV+  +++ 
Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P+ D E+ L+ +DQ INDRG  +D +L+          ++ + +   +++   +
Sbjct: 179 NKLAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI++  +++  ++ ++ ++       +++  RLA S +++ K 
Sbjct: 237 ENPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVENT--QGDVAEMMKLRLAMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L +++    R + 
Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDL 353

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         + S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     I
Sbjct: 354 VELLYDSTPDVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T +K F+ PI +++K    RA GKV  LA  Y G      +M +             
Sbjct: 414 YEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGAL------------ 461

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                    F  +++L G     + ++WR  +  ++  W ++  
Sbjct: 462 ------------------------NFVEEEELKG-----LVQSWRTANPHIVNYWYEIDG 492

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                V+E      R++  V  + +      + I LPS R L Y   +   +   + +  
Sbjct: 493 AVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSESVS 546

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  +YG K  ENIVQA +RD+L E M    K G+DIV  +HDE+V E P
Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/698 (31%), Positives = 334/698 (47%), Gaps = 77/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +     I L AY  D+E  ++ D  +   +P  +L
Sbjct: 1   MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             LRD+ V+  A N+ FER+   K L   + ++ W CT+V A + GLP SL+     LN 
Sbjct: 61  SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            E   KM+EG+ LI  F   C+ +I +   +    +H ++ W+LF  YCKRDVE  + + 
Sbjct: 121 EEQ--KMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   PL + E+ L+ LDQ INDRG  +D +LV +        ++++ +   +L+   +
Sbjct: 179 KRLSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+ +  + +  +   L   +   L  +++  RL  S +++ K 
Sbjct: 237 DNPNSVSQLKGWL-ENQGVFMDSLGKKDVAKQLKEVDGEIL--EMLKLRLLMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +   V SD R+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+    + + 
Sbjct: 294 QAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKA 353

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +     +   + S+ +R+  +  +G + +VAD A IEARVLAW++GE W+++ F  G DI
Sbjct: 354 LDLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDI 413

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A  F  P++K  V+   R  GK+ ELALGY G     K M               
Sbjct: 414 YCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L     + +   WR  +  ++  W  + +
Sbjct: 460 --------------------------ALDMGLDEEELQPLVNQWRMANPHIVAFWWVIDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
               V +       R    V  L++        I LPS R+L Y   + + +        
Sbjct: 494 ASKEVYE------TREPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  TYG KL ENIVQ I+RD+L  GM    K   DIVL VHDE V E  
Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +C L    P WA+GLPL+A+GY  + Y+K
Sbjct: 608 EGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 199/705 (28%), Positives = 317/705 (44%), Gaps = 95/705 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ETRS   + + GV+ Y  AE   I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG-----------IDIPSKRWICTSVLARTNGLPS 107
             L D++V+  A N+ FER+   + L              +  + W CT V +   GLP 
Sbjct: 61  DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           SL      L   E   KM EGKALI  F       P          + W+LF  Y +RDV
Sbjct: 121 SLAVVARVLGLEEQ--KMTEGKALIRYFSTPPFHEP--------TGEKWELFKSYNRRDV 170

Query: 168 EATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           E    + +RL   P+     + ++LDQ INDRG  +D+  V    ++ A  ++K+ + + 
Sbjct: 171 EVEMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLK 230

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            LT   + +      ++ +L    G++   + + T+ ++L+  N++ L K+++  R   +
Sbjct: 231 TLTG--LENPNSVAQMKAWL-KEQGVETESLDKKTVAALLT--NVSALLKEVLELRQQLA 285

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            S++ K   +   V +D R RG  QFYGA+RTGR+SG   Q QNLP+   +     +++ 
Sbjct: 286 KSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLV 345

Query: 346 ALNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                  +         + S  +R+  I   G+K +VAD + IEARVL+W+A E W++  
Sbjct: 346 RQGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRMDV 405

Query: 402 FANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           FAN  DIY  T  + F+  + K   +   R  GK  ELA GY G     K          
Sbjct: 406 FANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG------- 458

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A++  +     + +  AWR  +  ++ 
Sbjct: 459 ---------------------------------ALESGMKEDELKPLVDAWRTANPNIVD 485

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCS 578
            W  +       ++E      R +     +        + I LPS RRL Y   + G+  
Sbjct: 486 FWWAVDRAAKDCIKE------RSITGTHGIKFIYQSGMMFIELPSGRRLAYVKPRIGENQ 539

Query: 579 YLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
           +   +        + +  R  +YG KL ENI QAISRD+LC  M+  T    DIV  VHD
Sbjct: 540 FGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQ--TLRSMDIVAHVHD 597

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E++ E  +    S+ + C  M + P WA+GL L+A+G+E + Y+K
Sbjct: 598 ELIIECDE--RVSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/699 (31%), Positives = 330/699 (47%), Gaps = 76/699 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID+ET S   +  VG + YAE A I L AYAWDD PV++ D T +  +P+D+L  L D
Sbjct: 3   LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62

Query: 64  ETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNACLALN 117
             +M  A N+ FER +    L  +      +    W CT V A T GLP SL      L 
Sbjct: 63  NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             E   KM  G  LI  FCK    +            +  + W  F  YC RDVEA RE+
Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAEREV 182

Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +RL   P+ + ER LW LDQ INDRG RID  L        +  R ++  +   L+   
Sbjct: 183 RRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSG-- 240

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           + +      L+ +++   G   + +++ T+  ++  +  ++  K ++  ++  S +++ K
Sbjct: 241 LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAK-SETVKTMLQLKMLLSKTSVKK 299

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
              + +A  SDGR  G LQFYGA+RTGRW+G + Q QNLPR   +E    + +      +
Sbjct: 300 YEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGDTD 359

Query: 352 T----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                  +P  + S  +R+  I + G +  VAD + IEARV+AW+AGE W++  FA+G D
Sbjct: 360 ALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGGD 419

Query: 408 IYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           IY  + +K F+ P++K  V+   R  GKV ELALGY GG    K M +            
Sbjct: 420 IYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGAD----------- 468

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                        K  L     E +K++WR     +++LW D  
Sbjct: 469 -----------------------------KLGLTDAELEEIKQSWRKASPRIVRLWSDFE 499

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------- 576
                 V+E  ++S +       + +      + I LPS R L Y   + +         
Sbjct: 500 SAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDREG 554

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
            +Y         ++RTYGG+L EN +QAI+RD L   M      GY IV+ +HDE+V ET
Sbjct: 555 LTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVVET 614

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P      +  +C +M+K   WA GL L A+GY    Y+K
Sbjct: 615 PR-SVDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/700 (32%), Positives = 338/700 (48%), Gaps = 74/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y +     I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGKALI  FCK       +         + ++ W  F EYCK+DV   RE+ 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 175 KRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L      ER+  LW LDQ IND G ++D +L+    E   +  +KL ++ +K+T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G ++  +++ ++  IL   +   + + L L +L  S ++I K 
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKL-MSKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      + 
Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           I         + S  +R+  I S G + +V+D + IEARV+AW+AGE W++  F +   I
Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI+ + K  E R  GK+ EL+ GY G      +M +      ++  Q +
Sbjct: 418 YEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEELQPI 477

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              + + +     +   W  D+  + A+KD+ I      +K                   
Sbjct: 478 --VTAWRNANPNITKFWWDVDKAAKKAIKDRTIVEIQHGIK------------------- 516

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577
                                      +   + I LPSSRRL Y   K +          
Sbjct: 517 ------------------------FIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552

Query: 578 SYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           +Y      + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+ VHDE+V +
Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 333/702 (47%), Gaps = 81/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L   GV+ Y  A    I L  YAWDD+PV+L D      +P  ++
Sbjct: 1   MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             +    V+  A N+ FERI   K L   + +  W CT++ A   GLP  L     AL  
Sbjct: 61  NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
              + K   GK LI  F   CK +  +        +H  + WQ F +YC RDVE  RE+ 
Sbjct: 121 --KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++   P+ + E  LWLLDQ IND G  +D+ LV +  +   Q   +L+ +   LT   +
Sbjct: 179 RKIERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLTK--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +S+  ++++L+ ++     + L+  R   + S+I K 
Sbjct: 237 DNPNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDADGE--IERLLTLRQEMAKSSIAKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V  D R+RG  QFYGA+RTGRW+G +FQ QNLP+    +  + + +    R + 
Sbjct: 294 AAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKE 353

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         + S+ +R+ +I   G + +VAD + IEARVLAW+A E W +  F     I
Sbjct: 354 LELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  T ++ F  P++K++K     E RA GKV  LA GYQGG    K M +          
Sbjct: 414 YEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGAD--------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                          K  L  T  + + +AWR+ +Q +++ W D
Sbjct: 465 -------------------------------KMGLSDTELDDIVRAWRSANQRIVRFWYD 493

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------- 576
           + +     V+E      R    V  L  +     + I LPS RRL Y   K +       
Sbjct: 494 VEKAAVLAVRE------REPQRVGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFDK 547

Query: 577 --CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
              +Y       Q  R++TYGG+L ENIVQ  +RD L E M      GY IV  VHDEI+
Sbjct: 548 DGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEII 607

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +E       S+  LC +M +   WA GLPL+A+G+E   Y+K
Sbjct: 608 TEMRKGQ-GSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/698 (31%), Positives = 342/698 (48%), Gaps = 77/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY       I L AYA+D + VK+ D      +P++++
Sbjct: 1   MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +E ++  A N+ FERI   + L   + +  W CT+V A T G P SL      L  
Sbjct: 61  EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGK LI  F   CK +  +         H  + W  F +YC RDVE  R + 
Sbjct: 121 TEQ--KMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+S+ E+  ++LD  INDRG  +DLDLV +  E     ++    +  +LT   +
Sbjct: 179 KKLSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +S+  +  +   ++     + L+  RL  + ++I K 
Sbjct: 237 DNPNSVAQLKQWLIE-NGVEVDSLSKKAVSDLAKEADGE--VERLLNLRLQLAKTSIKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  AV  D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      +T
Sbjct: 294 EAIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDT 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S+ +R+  I  +  + +VAD + IEARV+AW+AGE W++  FA    I
Sbjct: 354 LALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI++++K    R  GK+ ELALGY G       M               
Sbjct: 414 YEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +  AWR  +  + +LW D+ +
Sbjct: 460 --------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
                V++  ++       V ++ ++     + I LPS RRL Y   + + +        
Sbjct: 494 AAIKAVKKKTTVM------VGKIKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVT 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                AT +  R  TYG KL ENIVQAI+RD+L E M    +NGY+IV+ +HDEIV E P
Sbjct: 548 YEGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              + S+  +C +M   P+WA+ LPL+A+G+E + YRK
Sbjct: 608 LN-FGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/698 (29%), Positives = 335/698 (47%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP ++ D      MP +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D++V+  A N+ FER    +  G+ +  + W CT+V A    LP SL+    ALN 
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  FC     +           ++  + W+LF  YC RDV+  +++ 
Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P+ D E++L+ +DQ INDRG  +D +L+          ++   +   +++   +
Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI++  +++  ++ ++  +       +++  RL+ S +++ K 
Sbjct: 237 ENPNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEKTEGE--ISEMMKLRLSMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L ++I    R + 
Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         + S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     I
Sbjct: 354 VELLYDSTPDVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T +K F+ PI++++K    RA GKV  LA  Y G      +M +             
Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL------------ 461

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                    F  +++L G     + ++WR  +  ++  W ++  
Sbjct: 462 ------------------------NFVEEEELKG-----LVQSWRTANPHIVNYWYEIDG 492

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                V+E      R++  V R+ +      + I LPS R L Y   +   +   + +  
Sbjct: 493 AVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  +YG K  ENIVQA +RD+L E M    K G+DIV  +HDE+V E P
Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLEVP 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     + L A + D+ PV ++D   +  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FERI     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +RL   P+ D   D +  DQ INDRG  ID+D V    ++  + + K+ E+
Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT   + +      +  +L    G+    + +  +K +L    + +    ++  R  
Sbjct: 240 LKALTG--LENPNSVLQMIGWLRE-HGVTTDSLDKKAVKGLLK--TVDETTAQVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354

Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E    I D     S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + E R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLTEEELQPLVNSWRLANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576
             W D+       V+E    S   +           +  + I LPS R+L Y   +    
Sbjct: 495 LYWWDVDNAVKTAVKELIPTSTHGIQ------FEVKRGILFITLPSGRKLAYIKPRIGDN 548

Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENIVQAISRDIL   MK      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KNFKIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPIEQK--LDEVASLMGIAPDWLSDINLRADGYECFFYQK 650


>gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703]
          Length = 699

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/703 (37%), Positives = 370/703 (52%), Gaps = 36/703 (5%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            KL+ D ET    P+ K G  AYAE   + +  YA +D+PV  WD T  + MP DL  YL
Sbjct: 3   KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGLPSSLKNACLALNFS 119
           +D ++   A NS F+R + +  +   I    +RW  T V A  +GLP  L   C  L  +
Sbjct: 62  QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121

Query: 120 EHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           +   K +EGKALI  FCK    +S  +  T   H + W+ F +Y   D+EA R + K+L 
Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181

Query: 179 PLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             +    E  LW  DQ INDRG ++D  L       +  E+K L +    LTD  ++++ 
Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  ++    G+DL DM + TL+  ++   +  + ++L+  RL +S ++  K  TL 
Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLRELLAIRLQASTTSTSKYKTLL 301

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353
           + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +   I+AL  G      
Sbjct: 302 KGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLF 361

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF----------- 402
            + + L S  +R CI+A  GKKLVV+DL+ IE RVLAW+AGE+WK++AF           
Sbjct: 362 DNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDE 421

Query: 403 -----ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
                  G D+Y   YA+AFN   D V+K QR IGKVMEL LG+ GG   F T A   GL
Sbjct: 422 GGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGL 481

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           DL + +             +A+S +     Q   F + +++   AC+ +K+ WR  H   
Sbjct: 482 DLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVF-IACDSLKRMWRNAHPET 540

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD- 576
           +  W ++       +         R   +     RR    + I LPS R + Y  ++ + 
Sbjct: 541 VSFWSEIENTVRRAIINPKQTFVCRKLKI-----RRDGSWLRIQLPSGRSVCYPGIRIEG 595

Query: 577 --CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
              SY+  NT + +  R +TYGGKL EN  QA +RD++   M      GY+I LTVHDE+
Sbjct: 596 DKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDEV 655

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++E PDT  F+   L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 656 LTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/700 (32%), Positives = 337/700 (48%), Gaps = 74/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y +     I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGKALI  FCK       +         + ++ W  F EYCK+DV   RE+ 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 175 KRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L      ER+  LW LDQ IND G ++D +L+    E   +  +KL ++ +K+T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L      ++  +++ ++  IL   +   + + L L +L  S ++I K 
Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDENVVRTLELRKL-MSKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      + 
Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           I         + S  +R+  I S G + +V+D + IEARV+AW+AGE W++  F +   I
Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI+ + K  E R  GK+ EL+ GY G      +M +      ++  Q +
Sbjct: 418 YEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEELQPI 477

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              + + +     +   W  D+  + A+KD+ I      +K                   
Sbjct: 478 --VTAWRNANPNITKFWWDVDKAAKKAIKDRTIVEIQHGIK------------------- 516

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577
                                      +   + I LPSSRRL Y   K +          
Sbjct: 517 ------------------------FIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552

Query: 578 SYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           +Y      + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+ VHDE+V +
Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/704 (32%), Positives = 333/704 (47%), Gaps = 79/704 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L ID+ET S   +   G + Y E     I L AYA++DEPV++ D T+  A+P  ++
Sbjct: 1   MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             L D  V+  A N+ FER   K  +  +  P  +W CT + A T GLPSSL     AL 
Sbjct: 61  DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYD----CTRANHVQAWQLFGEYCKRDVEATREL 173
             E   KM+EGKALI  FCK    +   D        + ++ W+ F EYCKRDVE  RE+
Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180

Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              L        E+ LW LDQ INDRG   DL L+ +  E      ++L +  +KLT   
Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG-- 238

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSGSA 288
           + +      ++ ++    G ++  +++ ++  ++  +   N +++ K L L R   + ++
Sbjct: 239 LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLEL-RQLMAKTS 297

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           I K +T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +    +      
Sbjct: 298 IKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREG 357

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
           + E +           S  +R+  I   G + +V+D + IEARV+AW AGE W++  F+ 
Sbjct: 358 KFEEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFST 417

Query: 405 GEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              IY  + ++ F  PI+ + K  E R  GK+ ELALGY G      +M     +  ++ 
Sbjct: 418 HGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEEL 477

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
              VKS      W  A  +                        + K W            
Sbjct: 478 PGLVKS------WRNANPN------------------------ITKFW-----------W 496

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------ 576
           D+ +     ++E  +++ +       L        + I LPS R+L Y   K +      
Sbjct: 497 DVDKAAKKAIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFS 551

Query: 577 ---CSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
               +Y      + Q  R  TYG KL ENIVQA SRD L E M    K GYDIV+ VHDE
Sbjct: 552 GDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVHDE 611

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +V + P     +V  +  LM +   WA GLPLKA+GYE   Y K
Sbjct: 612 VVLDIPKDRA-TVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 202/706 (28%), Positives = 311/706 (44%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     I L A + ++ PV ++D ++   +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSK-EKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FER+     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +RL   P+ D   D +L DQ INDRG  ID+D V    ++  + + ++ E+
Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT   + +      +  +L    G+    + +  +K +L    +      ++  R  
Sbjct: 240 LKALT--SLENPNSVLQMIGWLRE-HGVTTDSLDKKAVKELLK--TVDDKTSKVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARK 354

Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E    + D     S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K  +    R  GK+ ELA GY G     K M       
Sbjct: 415 VFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576
            LW D+       V+E    S   +              + I LPS R+L Y   +    
Sbjct: 495 LLWWDVDNAVKTAVKEQIPTSTHGIQ------FEVRSGILFITLPSGRKLAYIKPRIGEN 548

Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENIVQAISRDIL   +K      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQL--KEFKIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPMEQK--IDKIASLMGIAPDWMSDINLRADGYECLFYQK 650


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/702 (29%), Positives = 315/702 (44%), Gaps = 73/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G++ YA  +   I L AY+ D   VK+ D  +   +P  ++
Sbjct: 1   MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D+ ++  A+N+ FE     +  G     ++W  T       G  + L     A+  
Sbjct: 61  EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K   GKALI  FC   K +  +        +H  + W+LF  YC +DV    E++
Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   P+   E++LW+LDQ IN  G +ID +LV     +      +L E+ +++T   +
Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L   TG D+ ++ +GT+  ++      +  + ++  R   + ++I K 
Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDKEAVR-VLEIRQELAKTSIKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + EA+  DGR+RG LQFYGA+RTGRW+G + Q QNLPR         + I      + 
Sbjct: 297 VAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDADF 356

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +    G      S  +R+  + S G K VVAD + IEARV+AW+AGE W+ + FA    I
Sbjct: 357 LKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGKI 416

Query: 409 YVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  + ++ F  PI+ + K       R  GKV ELALGY G +     M            
Sbjct: 417 YEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMG----------- 465

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A+   L       V + WR  ++ +  LW  
Sbjct: 466 -----------------------------ALDMGLEEKELPDVVRRWRNANKRITDLWYG 496

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL--- 580
           +      +++ G +   + +     + +   +  + I LPS R+L Y       +     
Sbjct: 497 IENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFGSN 556

Query: 581 -------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                  N  T +   + TYGGKL ENIVQAISRD L   +K     G   V+ +HDE V
Sbjct: 557 ALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDEAV 616

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +    P   +  +C LM +   WA GL LKA G+E+  Y K
Sbjct: 617 IDA--DPNVDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/707 (30%), Positives = 320/707 (45%), Gaps = 85/707 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIE+ SP  L K GV+ YAE     + L  Y+ D  PVK+ D     +MP ++L
Sbjct: 1   MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
             L D +V+  AHN+ FER+     L            +  ++W CT + +   GLP SL
Sbjct: 61  AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165
                 L     + K   GK LI +FC  +  S      R N   A    W  F +Y +R
Sbjct: 121 DAVAAVLKL--DVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             KLT   + +      L+ +L    G +L  +++  + + L     T + K+++  R  
Sbjct: 239 AQKLTG--LDNLNSPIQLKQWLVTR-GCELESLAKAEVDAALD--TATGVVKEVLELRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            + S++ K   +     +DGR RG +QFYGA RTGR++G + Q QNLPR    +    ++
Sbjct: 294 LAKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARS 353

Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +      + +           S  +R+  I S G + +VAD + IEARV+AW+AGE   +
Sbjct: 354 LVQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413

Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            AF  G+D+Y  T ++ F+ P++K  ++ E R  GK+  LA GY G     K M      
Sbjct: 414 AAFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG----- 468

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A    L     + +  AWR  +  +
Sbjct: 469 -----------------------------------AFTMGLAEHELKPIVDAWRQANPHI 493

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           +QLW D+ +     +      S+R+   +  L        + I LPS RRL Y   +   
Sbjct: 494 VQLWADVEQAAIAAI------SSRQPIRLRNLRFSVESGILFIELPSGRRLAYVQPRLGE 547

Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +     +          +  +  TYGGKL ENIVQAI+RD+L  GM    K G+ IV+ V
Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHV 607

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEIV + P    F+V   C LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 608 HDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 313/706 (44%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     + L A + D+ PV ++D   +  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FERI     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +RL   P+ D   D +  DQ INDRG  ID+D V    ++ ++ + K+ E+
Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT   + +      +  +L    G+    + +  +K +L  ++  +    ++  R  
Sbjct: 240 LKALT--RLENPNSVLQMIGWLRE-HGVTTDSLDKKVVKELLKTAD--ETTAQVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QF+GA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354

Query: 344 IQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E    + D     S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + E R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L       +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLKDKELRPLVDSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576
             W D+       +++        +          +K  + I LPS R+L Y   K    
Sbjct: 495 LFWWDVDRAVKTAIKQHIQTETHGIQ------FEVNKGMLSITLPSGRKLAYVKPKIGEN 548

Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENIVQAISRDIL   MK   +  ++IV  VH
Sbjct: 549 QFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E       S+  +  LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 200/698 (28%), Positives = 315/698 (45%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIE+ S   L K GV+ YAE     I L AY+ D  PV + D  +   +P  + 
Sbjct: 1   MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D+ V+  A N+ FER    + L   I    W C+ V +   GLP SL+ A +    
Sbjct: 61  QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTG- 119

Query: 119 SEHLTKMEEGKALIARFCKGSID---SPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K++EGK LI  FCK       +   +    +H  + W  F  Y +RDVE  + + 
Sbjct: 120 -ADKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P+ + E   ++LDQ INDRG  +D   V          R+ L   +  LT   +
Sbjct: 179 DKISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLTK--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + +  +  +L  +       +++  R   + S++ K 
Sbjct: 237 ENPNSVMQMKDWLAE-QGVETGALDKAAVHELLKSA--QGDVAEVLTIRQKLAKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +    D R RG +QFYGA+R+GR++G + Q QNLP+    +    + +   +  E 
Sbjct: 294 TAMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEA 353

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         L S+ +R+  I     + +VAD + IEARV+AW+AGE W+ + FA    I
Sbjct: 354 LDMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ FN P++++ K    R  GK+ ELALGY G     + M               
Sbjct: 414 YEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + + +AWR  +  ++Q W  + +
Sbjct: 460 --------------------------ALDMGVEEEELKPLVQAWRQANPKIVQFWWAVDQ 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---------KGDC 577
                V++  + S   ++             + + LPS R L Y            +G C
Sbjct: 494 AAQKAVKQRTTTSTHGIS------FTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLC 547

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                AT +  R  TYG KL ENIVQA+SRD+L   M+   + GY IV+ VHDE+V E  
Sbjct: 548 FEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEA- 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              + +V  +C+LMT  P W+ GL LKAEGY    Y+K
Sbjct: 607 -KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/706 (28%), Positives = 312/706 (44%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L ID+ET     L K GV++YAE     I L A + D+ PV ++D T+   +P  +L
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           Q L +++++  A N+ FERI     L            +    W C+ V +   GLP SL
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   E   K++EG  +I  FC   K +  +        +H    W  F  Y KR
Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179

Query: 166 DVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  +L   P+ D   + +  DQ INDRG  ID+D V     +  + + K+ E+
Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           + +LT   + +      +  +L    G+    + +  +K +L    +      ++  R  
Sbjct: 240 LKELTG--LENPNSVLQMIGWLRE-HGVTTNSLDKKAVKELLK--VVDAKTTKVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354

Query: 344 IQALNRGETIADPLGL---ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E      G     S  +R+  + S+GKK +V D + IEARVL+ +AGE W+  
Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + + R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576
             W D+ +     ++         +        +  K  + I LPS R+L Y   K    
Sbjct: 495 LFWWDVDKAVKTAIKYQKQTETHGIQ------FKVRKGMLFITLPSGRKLAYVKPKMGEN 548

Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENI+QAISRDIL   MK      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DEI+ E   +   ++  + +LM K P W   + L+A+GYE   Y+K
Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/699 (29%), Positives = 317/699 (45%), Gaps = 71/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA+     I + AY+WD  PV++ D  +   +P +++
Sbjct: 1   MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A+N+ FE     +     I  ++W CT V     G  + L     AL  
Sbjct: 61  EALADPAVVKHAYNAAFEWYCLNRFFYSPI--EQWRCTQVHGLYCGYTAGLGAVGEALGI 118

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K+  G +LI  F   CK +  +     T  +H  + W+LF EYC  DV A  E+ 
Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+ D E  LW LDQ IN RG   DL +V     +  Q   +L  + + LT   +
Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            + +    L  +L   TG ++ ++ +GT+  ++   +    A+ ++  R   S ++  K 
Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLD-EGKARRVLEIRQELSKTSTKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A  SD R+RG LQFYGA+RTGRW+G + Q QNLPR   S     + +    + E 
Sbjct: 296 AAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVEM 355

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +    G      S  +R+  +   GK+L VAD + IEARV+AW+AGE W++  FA    I
Sbjct: 356 LKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI+++ K  + R  GKV ELALGYQGG      M               
Sbjct: 416 YEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG-------------- 461

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       +   WR  ++ ++ LW  +  
Sbjct: 462 --------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSMEA 495

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGDCS 578
               V++ G  +  R +           +    I LPS R+L Y+          K    
Sbjct: 496 AAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPALH 555

Query: 579 Y--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           Y  ++  + +     TYGGKL EN VQAI+RD L   +      GY IVL VHDE+ +E 
Sbjct: 556 YWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAEL 615

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +    +  +  +M +   WA GLPLK +G+    Y K
Sbjct: 616 --SSADELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652


>gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
          Length = 693

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/695 (37%), Positives = 371/695 (53%), Gaps = 30/695 (4%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L++D+ET S  P+   G  AYA  A I L A+A DD PV + + TE   +P  L   LRD
Sbjct: 5   LWLDLETYSETPIRN-GTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSK-------RWICTSVLARTNGLPSSLKNACLAL 116
              +  AHNS F+R + +  L              RW  T V A  +GLP SL + C  L
Sbjct: 64  GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             ++   K + GKALI  FCK    +      T+  H + W+ F +Y   D+EA RE+ K
Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183

Query: 176 RLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +L   +    E  LW  DQ INDRG ++D  L       +  E+K+L      LTD  ++
Sbjct: 184 KLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEVQ 243

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           ++ Q   L  ++    G+ L DM   T++  +S  ++    ++L+  RL +S ++  K  
Sbjct: 244 AATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSDPDLPIELRELLAIRLQASTTSTSKYK 303

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET- 352
           TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +   I+AL  G   
Sbjct: 304 TLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCAD 363

Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----G 405
               + + L S  +R CI+A  GKKLVV+DL+ IE R L W++GE+WK++AF +     G
Sbjct: 364 LLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGTG 423

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y+  YA+AFN   D V K QR IGKVMEL LG+ GG   F T A   GLDL   ++ 
Sbjct: 424 HDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAKA 483

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                      +A+S +     Q   + + +++   AC+ +K+ WR  H   +  W ++ 
Sbjct: 484 ALPNVPASIQREAQSWYKASVKQKRTYGLSEQVF-IACDSLKRMWRNAHPKTVSFWYEIE 542

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL-- 580
           +     +        R+     +L +RR    + I LPS R + Y  ++   G  SY+  
Sbjct: 543 DTVRRAIAAP-----RQTFTCRKLKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMGI 597

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
           N+ + +  R +TYGGKLTEN+ QA +RD++   M     +GY+I LTVHDE+++E PDT 
Sbjct: 598 NSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDTE 657

Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            F+   L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 658 QFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/704 (29%), Positives = 314/704 (44%), Gaps = 85/704 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET SP  L   GV+ YAE     I L  Y+ D  P K+ D      +P  +L
Sbjct: 1   MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109
           Q L D TV   A N+ FER+     L    P          + W CT V A + GLP SL
Sbjct: 61  QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             A  AL     + K   G+ LI RF     D        ++    WQ +  Y +RDV+ 
Sbjct: 121 DGAAKALRLP--IEKDPAGQKLIRRFSIPGKDGI--RVLPSDDPVGWQQYISYNRRDVDV 176

Query: 170 TRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             +L  RL   P+ + E + + LDQ IND G RID  L     E+ ++ R        +L
Sbjct: 177 EVQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQL 236

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L+ +L    G +L  +++  +++ L    +T    +++  R   S S
Sbjct: 237 TG--LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALE--TVTGDVAEVLRLRQDLSRS 291

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K   +     SD R RG +Q+ GA RTGR++G + Q QNLPR    +    +++   
Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351

Query: 348 NRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
              + +           S  +R+  I S   + +VAD + IEARVLAW+AGE+  ++AF 
Sbjct: 352 GNSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQAFR 411

Query: 404 NGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            G+D+Y  T ++ F  P++K   + E R  GK+  LA GY G     K M          
Sbjct: 412 EGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMG--------- 462

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  L  +  + +  AWR  +  V+Q W
Sbjct: 463 -------------------------------ALRMGLDESELKPLVDAWRDANPMVVQFW 491

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            D+ +          ++  R    V R+ +      + I LPS R L Y   +   +   
Sbjct: 492 HDIEQAAIT------TVETRTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRLGENRFG 545

Query: 582 ----------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                       T +     TYGGKLTEN+VQA +RD+L   M +    G+ IV+ +HDE
Sbjct: 546 MTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMHIHDE 605

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV + P T   SV  + +LMT+ P+WA GLPL A+GYE   Y K
Sbjct: 606 IVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/697 (32%), Positives = 324/697 (46%), Gaps = 77/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP VGV+ YA  E   I L AYA D   V++ D      +P D+L
Sbjct: 9   MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V+  A N+ FER+     LG  +  + W C+ V A   G+P  L     AL+ 
Sbjct: 69  DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  F    K +  +   +     H    W+ F  YCKRDVE    + 
Sbjct: 129 ETE--KMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAIT 186

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL  +P+   E D +  DQ INDRG RID DL     +     R    E + +LT   +
Sbjct: 187 KRLHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELT--RV 244

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+ +  +++  + + L  + +     +++  R   + S++ K 
Sbjct: 245 DNPASVTQLLAWL-RSQGLQIDSLAKADVAAALEGA-LEGDVAEVLALRQEMAKSSVKKY 302

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +      DGR  G LQF GA RTGRW+G + Q QNLPRQ  S+      +      + 
Sbjct: 303 ERMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADM 362

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +    G    + S+ +R+  +A  G + +VAD + IEAR +AW+AGE W +  F  G DI
Sbjct: 363 LETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDI 422

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFSQNVK 467
           Y  T  + F   ++K S   R   KV  LA GYQGG    KTM     GL   + +    
Sbjct: 423 YCETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMGGEKLGLSEDEMAD--- 478

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                                 +  AWRA +  + QLW D+   
Sbjct: 479 --------------------------------------IVAAWRAANPKIAQLWWDINAA 500

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT--- 584
              V+++GG+ +      V R+ +   K  + I LPS R LVY   +   +     +   
Sbjct: 501 AIAVIKDGGARA------VGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGESITH 554

Query: 585 ------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                  +  R  TYGGKLTENIVQA +RDIL   +    ++GY +V+ +HDE+V+E P+
Sbjct: 555 MGVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPE 614

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               SV  LC+LM++ P WA GLPL AEG+E+  YRK
Sbjct: 615 G-RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/693 (29%), Positives = 314/693 (45%), Gaps = 74/693 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L +D+ET S   L + GV+ Y +     I LC+Y+ DD  V   D      +P +++ 
Sbjct: 20  KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D +V+  A+N+ FER      LG  +    W CT V A T GLP SLK+    L  +
Sbjct: 80  ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI- 178
               K+ EGK LI  F   +     +    ++   AW LF +Y  RDVE    + ++L  
Sbjct: 140 HQ--KLAEGKDLIKYFSLPTKTGIRHQP--SDDSAAWALFKQYNARDVEVETTIRRKLSH 195

Query: 179 -PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            P+ D     + +DQ INDRG  ID  L         + RK+      +LT   + +   
Sbjct: 196 HPVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPAS 253

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              L+ +L    G  +  M++  + S L  +  +   ++ +  R   S S++ K   +++
Sbjct: 254 PLQLQSWLAE-QGCKISSMAKEDVDSALDTATGS--VREALELRQDLSKSSVAKYRKMAD 310

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---- 353
           A  +DGR  G LQFYGASRTGRW+G + Q QNLPR    +    +++      + +    
Sbjct: 311 ATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLY 370

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                  S  +R+  I S   + +VAD + IEARVLAW+AGE+  + AF NGED+Y  T 
Sbjct: 371 PSVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATA 430

Query: 414 AKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           +  F  P++K   + E R  GK+  LA GY G     K M                    
Sbjct: 431 SAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG------------------- 471

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                                A+K  L  +  + +  AWRA +  ++ +W D+ +     
Sbjct: 472 ---------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTAIQA 510

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------- 584
           +      + R    +  L     K  + I LPS RRL Y       +     +       
Sbjct: 511 I------TTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQG 564

Query: 585 --SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
              +  +  TYGGKL ENIVQA +RD+L E +      G+++V+ +HDE+V +       
Sbjct: 565 INRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSGT 624

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +V  +C+LM + P+WA GLP+ A GY+   Y K
Sbjct: 625 TVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 200/705 (28%), Positives = 317/705 (44%), Gaps = 82/705 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET S   L   GV+ Y E     + L AYA+DD+PV++ D T    +P  ++
Sbjct: 9   MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V+  A N+ FER   KK  GI     +W CT+V A   GLP  L+     L  
Sbjct: 69  HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA--NHVQAWQLFGEYCKRDVEATREL 173
                K   GK LI  F   CK +  +          + ++ W+ +  Y  +DV   RE+
Sbjct: 129 EAQ--KDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREV 186

Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            ++L   P+   E DLW LDQ INDRG ++D  L  +  +   Q +  L ++   +T   
Sbjct: 187 RRKLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQ-- 244

Query: 232 IRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           + +      L+ +L    G++  D + +  + ++L  +      + ++  R     +++ 
Sbjct: 245 LENPNSLTKLKEWLAE-QGLETPDGLGKEHMPTLLVQAPDEDT-RRVLQIRQELGKTSVD 302

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N ++ ++ +DGR RG LQF GA+RTGRW+G + Q QNLP+ + +   + + +      
Sbjct: 303 KYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDF 362

Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +    G    + S  +R+  I S G + +V+D + IEAR++AW+A E W +  F +  
Sbjct: 363 DLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHG 422

Query: 407 DIYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            IY    ++ F  P++ + K     E RA GKV  LA GYQGG      M          
Sbjct: 423 KIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG--------- 473

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A+K  +       + K WR  +  +++LW
Sbjct: 474 -------------------------------ALKSGIPEEELPGIVKRWRKANPRIVKLW 502

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY-- 579
               E     V+E  ++          +  R     +   LPS R L Y + +       
Sbjct: 503 YAAEEAALTAVREKRTVPL-----AHGVKYRYKSGTLFADLPSGRSLAYVNPRIKPDPNF 557

Query: 580 ---------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                    ++    + M  RTYGG+L EN+VQAI+RD L E +       Y  V+ VHD
Sbjct: 558 GKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVMHVHD 617

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V + P     SV  +  +M++   WA GLPL A G+E + Y+K
Sbjct: 618 EVVLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/695 (30%), Positives = 324/695 (46%), Gaps = 76/695 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S + +   G +AY  +E   I L AYA+DDEPVK+ D T    +P  +L+
Sbjct: 4   KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDE-IPDTVLE 62

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L +  V+  AHN+ FER    K     +P ++W CT V     GLP+SL     AL  +
Sbjct: 63  DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ----AWQLFGEYCKRDVEATRELFK 175
           +   K  EGKALI  FC     +        N+ +     W  F EYC++DV   R + K
Sbjct: 123 QE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAK 180

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           ++   P  + E+  W LDQ I D+G RID+DLV        + +  L +    LT   + 
Sbjct: 181 KIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTG--LE 238

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L+ +L    G  +  +++ ++  +L+  ++ +  ++++L R   S ++I K  
Sbjct: 239 NPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDLDEDVREMLLLRQEMSKTSIKKYE 297

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351
            +  A   DGR+RG LQF GA+RTGRW+G + Q QNLPR    +  + +  + L  G+  
Sbjct: 298 KMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKD--IAEVRKDLKAGDYE 355

Query: 352 ----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                 ++   + S  +R+  IA +G    + D + IEARV+AW+AGE W++  F +   
Sbjct: 356 AFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGK 415

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           IY  + ++ F+ PI++V K  R  GKV ELALGY GG      M                
Sbjct: 416 IYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG--------------- 460

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                    A++  L     + +  AWR     +  LW+ + + 
Sbjct: 461 -------------------------ALEMGLKENELQGIVDAWRKASPAITSLWRGVEKH 495

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYL 580
               +      S R+      L        + I LPS R L Y   K           Y 
Sbjct: 496 AKLAI------STRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYE 549

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                   ++ TYGGKL ENIVQAI+RD L   ++     G D V+ VHDE ++E  ++ 
Sbjct: 550 GVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESE 609

Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             SV  L +++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 610 S-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/707 (30%), Positives = 317/707 (44%), Gaps = 85/707 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIE+ S   L K GV+ YAE     + L  Y+ D  P+++ D     ++P ++L
Sbjct: 1   MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109
             L D +V+  AHN+ FER+     L    P          ++W CT + +   GLP SL
Sbjct: 61  AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165
                 L     + K   GK LI +FC  +  S      R N   A    W  F +Y +R
Sbjct: 121 DAVATVLKL--DVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              LT   + +      L+ +L    G  L  +++  + + L  +  T   K+++  R  
Sbjct: 239 AQTLTG--LENPNSPIQLKQWLASR-GCVLDSLAKAEVDAALDTATGT--VKEVLGLRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            + S++ K   +     SDGR RG +QFYGA RTGR++G + Q QNLPR    +    +T
Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353

Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +      E +           S  +R+  I S G + +VAD + IEARV+AW+AGE   +
Sbjct: 354 LVRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413

Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +AF  G+D+Y  T ++ F  P++K  V+ E R  GK+  LA G+ G     + M      
Sbjct: 414 QAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG----- 468

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+   L     + +  AWRA +  +
Sbjct: 469 -----------------------------------ALTMGLAEHELKPIVDAWRAANPHI 493

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           + LW               +I++R+   +  L        + I LPS RRL Y   +   
Sbjct: 494 VALW------AGVEEAAIAAIASRQSIRLRNLRFSVEAGILFIELPSGRRLAYVKPRLGE 547

Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +     +          +  +  TYGGKLTENIVQAI+RD+L  GM    K G+ IV+ V
Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEIV + P+   F+    C LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 608 HDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 199/706 (28%), Positives = 310/706 (43%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     + L A + D+ PV ++D   +  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDF-NKEKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L ++ V+  A N+ FERI     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +R+   P+     + +  DQ INDRG  ID+D V    ++  + + K+  +
Sbjct: 180 DVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT   +        +  +L    G+    + +  +K +L    + +    ++  R  
Sbjct: 240 LKTLTG--LEKPNSVLQMISWLRE-HGVATDSLDKKAVKELLK--TVDETTAQVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QF+GA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARE 354

Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E+   + D     S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + E R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576
             W D+       V+E    S + +              + I LPS R+L Y   +    
Sbjct: 495 LYWWDVDNAVKTAVKELLPTSTQNIQ------FEVKSGILFITLPSGRKLAYIKPRIGEN 548

Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENIVQAISRDIL   MK    N + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--NDFKIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPIEQK--LDEVASLMGIAPYWLSDINLRADGYECFFYQK 650


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/697 (31%), Positives = 331/697 (47%), Gaps = 77/697 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L + GV+AYAE     I L AYA+DDE V + D  +   +P+ +L+ L
Sbjct: 10  LSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKAL 69

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D ++M  A+N+ FER      L   +P+++W C+SV A T GLP  L      LN  + 
Sbjct: 70  IDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGDQ 129

Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKRL 177
             K   GKALI  F   CK +  +         H ++ W  +  YC++DVE  R L KRL
Sbjct: 130 --KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRL 187

Query: 178 I--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
              P+ + E+ LW LDQ +ND G RID DLV +  +L A+E+  L E+  ++T   + + 
Sbjct: 188 ASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LENP 245

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
                LR +L    GI+   +++  +  +L  +++    + +++ R   S +++ K   +
Sbjct: 246 NSVAQLRDWLTSR-GIETSGLAKKQVSDLL-QTDLPGDVRRVLILRQMMSKTSVKKYEAM 303

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             ++  DG +RG LQFYGA+RTGRW+G + Q  NLP+    +    + +      E I  
Sbjct: 304 DRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITT 363

Query: 356 PLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
             G    L S   R+  I   G + VV+D + IEARV+AW+AGE W++K F     IY  
Sbjct: 364 LYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEA 423

Query: 412 TYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           + ++ F  PI++++K    R  GK+ ELALGY G       M                  
Sbjct: 424 SASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMG----------------- 466

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A++  L       + KAWR  +  ++ LW DL +   
Sbjct: 467 -----------------------ALEMGLSEDELPALVKAWRKANPNIVNLWYDLEKSAF 503

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---------KGDCSYL 580
             V+    ++A+       +        +   LPS R L Y            + + +Y 
Sbjct: 504 EAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITYE 558

Query: 581 N--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                + Q  R  TYGGK+ EN+VQAI+RD L E M      GY I   VHDE+V E P+
Sbjct: 559 GVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVPN 618

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                   +  +M++   WA GLP+ A+ +E   Y+K
Sbjct: 619 EQDAKAD-IERIMSEPIDWAPGLPMNADSFETGYYKK 654


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 197/706 (27%), Positives = 311/706 (44%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L ID+ET     L K GV++YAE     I L A + D+ PV ++D T+   +P  +L
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           Q L +++++  A N+ FERI     L            +    W C+ V +   GLP SL
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   E   K++EG  +I  FC   K +  +        +H    W  F  Y KR
Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179

Query: 166 DVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  +L   P+ D   + +  DQ IND G  ID+D V     +  + + K+ E+
Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           + +LT   + +      +  +L    G+    + +  +K +L    +      ++  R  
Sbjct: 240 LKELTG--LENPNSVLQMIGWLRE-HGVTTNSLDKKAVKELLK--VVDAKTTKVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354

Query: 344 IQALNRGETIADPLGL---ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E      G     S  +R+  + S+GKK +V D + IEARVL+ +AGE W+  
Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + + R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576
             W D+ +     ++         +        +  K  + I LPS R+L Y   K    
Sbjct: 495 LFWWDVDKAVKTAIKYQKQTETHGIQ------FKVRKGMLFITLPSGRKLAYVKPKMGEN 548

Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENI+QAISRDIL   MK      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DEI+ E   +   ++  + +LM K P W   + L+A+GYE   Y+K
Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/696 (30%), Positives = 321/696 (46%), Gaps = 76/696 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   + K GV+AY  AE   I L AYA++D+ + + D      +P  +++ L
Sbjct: 2   LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++  A N+ FER    K L   +P ++W C++V A   G   SL+ A  +LN    
Sbjct: 62  TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNL--Q 119

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
             KM+EGKALI  F               ++++ W++F  YCK+DVE  R + K+L   P
Sbjct: 120 QQKMKEGKALIRYFSMPCKRGERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYP 179

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IND G +ID  LV    E     + K  E+   LT   + +     
Sbjct: 180 VTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTG--LENPNSQV 237

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            L+ +L    G+    +S+  ++ +L      ++ K ++  R   S +++ K   +  AV
Sbjct: 238 QLKGWL-ETKGVKAESLSKEKVRELLKEVEDEKV-KRVLKLRQELSKTSVKKYEAIKRAV 295

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IAD 355
             D R+RG L+FYGA+RTGRWSG + Q QNLPR         + +      E        
Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
              + S  +R+  I +   + +V+D + IEARV+AW+AGE W I  F     +Y    ++
Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415

Query: 416 AFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            F  PI+K+ K       R  GKV  LA GYQG       M                   
Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMG------------------ 457

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 AVK  L       +  AWR  +  +++LW+ + +    
Sbjct: 458 ----------------------AVKMGLKEEELSGIVAAWRKSNSNIVKLWRKIEDAAIK 495

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------CSYLN 581
            V+E   +  +       L     +  + I LPS R L Y   + +          +Y  
Sbjct: 496 AVREKKVVKMQ-----YGLEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYEG 550

Query: 582 --TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
               T    R  TYGGKLTENIVQAI+RD L   M    + GY IV  VHDE++ + P+ 
Sbjct: 551 IEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPNG 610

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + S+  +  +M K   WAKGLPLKA+G+E   Y+K
Sbjct: 611 -FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/724 (37%), Positives = 363/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAE A + L AYA  + PV++WD T  + +P DL   L D
Sbjct: 11  LWGDLETYSPVPMA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL     
Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  ID DLV      + + ++ L +    LT G ++++ Q  A
Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T+   +    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E++   I A+  G       D +
Sbjct: 309 PDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------------- 404
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTWHT 428

Query: 405 ---------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      VSKEQR IGKV EL
Sbjct: 429 GAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  +    +       +  E       +  P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQQATELLEWTKANHRPTFDLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETAHT-----CCGITVQYRRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D P F+   L +LM   P WA+GLPL AEG++  
Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDTY 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/724 (37%), Positives = 361/724 (49%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAE A + L AYA  + PV++WD T  + +P DL   L D
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL     
Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  ID DLV      + + ++ L +    LT G ++++ Q  A
Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T+   +    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E++   I A+          D +
Sbjct: 309 PDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------------- 404
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCWHT 428

Query: 405 ---------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      VSKEQR IGKV EL
Sbjct: 429 GAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  +            E  E       +  P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAALYHIDLEAMAAQ-AVFPPLLLQEATELLEWTKANHRPTFDLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT-----CCGITVQYRRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D P F+   L +LM   P WA+GLPL AEG++  
Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDTY 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/714 (30%), Positives = 330/714 (46%), Gaps = 96/714 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + ID+ETRS + + K GV+AYA+     ITL + + DD  V+L+D      +P D+L
Sbjct: 1   MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             L DE+V+  A N  FER+   + L                  G  +    W CT +  
Sbjct: 61  TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG--SIDSPPYDCTRANHVQAWQL 158
           RT GL S+L +A  AL   +   KM EGKALI  FC    ++D  P   + A+  + W+ 
Sbjct: 121 RTLGLSSTLASAGAALKLEQQ--KMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWET 178

Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           F  Y K+DVEA   + +RL   P+ D   + + LDQ INDRG R+D++LV     L AQ 
Sbjct: 179 FKAYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQA 238

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           +  L  ++ +LT   I +    Y L  +L    G     + +  +K +L    +    K 
Sbjct: 239 KATLSSEMRRLTG--IENPNSVYQLLEWL-GEQGYKSDCLDKAAVKELLK--TVKDPVKS 293

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  RL  S S++ K   +  A  SD R RG   FYGASRTGRW+G + Q QNLP+    
Sbjct: 294 VLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIP 353

Query: 337 EEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +    +        + +     D     S  +R+  +   G K ++AD + IEARV+AW+
Sbjct: 354 DLTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWL 413

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKT 450
           AGE W++ AFANG DIY  + +K F  P+ K  V+ E R  GKV ELA GY G     K 
Sbjct: 414 AGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKA 473

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M            + + +     DW  A                                
Sbjct: 474 MGGDALNLSDSELKQIVT-----DWRDASP------------------------------ 498

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +++ W  + +     +++  +     +            + + I LPS R+L Y
Sbjct: 499 -----NIVKFWWTVDDAVKKAIKQKITTETHGLQ------FSYQSKMLFITLPSGRKLCY 547

Query: 571 SDVKGD--------CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
           +  +           +Y+   A+ +  R  +YG K  ENIVQA++RD+L   M+  T   
Sbjct: 548 AHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQ--TMRC 605

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             IV  +HDE++ E       S+  +C  M + P+WA+GL L+A+GYE + YRK
Sbjct: 606 CFIVGHIHDEMIIEADR--RMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/694 (39%), Positives = 369/694 (53%), Gaps = 26/694 (3%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MS LF+D+ET    P+   G  AYAE+A + L AYA D+ PV +WD      MP DL   
Sbjct: 1   MSTLFLDLETYCEVPIQN-GTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59

Query: 61  LRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L DE V   AHNS F+R + +  +    +   RW  T V A  + LP +L + C  L   
Sbjct: 60  LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119

Query: 120 EHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
               K + GK LI  FCK     S     TR  H   W  F EY   D+EA R + ++L 
Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179

Query: 179 PLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             +    E  LW LDQTINDRG  +D DL       + + +K L      +T G ++++ 
Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  A+  ++    G+DL DM + TL+  ++  ++    ++L+  RL +S ++  K  TL+
Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTLA 299

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353
           + VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    ++ + + I AL         
Sbjct: 300 KGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLF 359

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDI 408
           A+ + L S  +R CI+A  GKKLVVADL+ IE R++AW+AGEDWK+ AF       G D+
Sbjct: 360 ANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDL 419

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y   YAKAF    D V K+QR IGKVMEL LGY+GG   F T A+  G+DL   +     
Sbjct: 420 YKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAWP 479

Query: 469 TSTFEDWEQAESHHLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
           +   +   +AE    W  +Q   +F +K K     C+ +K+ WR  H  V   WK+L E 
Sbjct: 480 SIPADIIAEAEQFLAWRTEQRLGDFGLKPKTF-VVCDALKRLWRRAHPAVSSFWKELEEA 538

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--N 581
               V   G+    R         RR    + I LPS R L Y   +    G  SY+  N
Sbjct: 539 ARLAVLRPGTTYDCRTLKA-----RRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVN 593

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
             + +  R +TYGGKL EN+ QA SRD+L   M      GY IVL+VHDE ++E  D   
Sbjct: 594 QYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDE 653

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           FS   L  LM  NP WA GLPL A G+EA RYRK
Sbjct: 654 FSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/696 (30%), Positives = 337/696 (48%), Gaps = 76/696 (10%)

Query: 9   ETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           ET S   L   GV+ Y  +E   I L AYA DDEPVK+ D      +PS++L  + +  +
Sbjct: 2   ETYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPAI 61

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
           +  AHN++FER+   + LG  + + +W C+ + A   GLP+SLK+    L  SE   KM 
Sbjct: 62  IKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKMR 121

Query: 127 EGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IPL 180
            GK LI+ FCK       +      T A+  + WQLF +YC RDVE  RE+  +L   P+
Sbjct: 122 IGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFPI 181

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              E +LW  DQ +ND G RID+++V  +     +  ++L  +  ++T+GI    ++   
Sbjct: 182 PASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--GPKKIAQ 239

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L+ ++       +  + +  +  +L  S+I+   + ++  R  S  ++I K   +  +V 
Sbjct: 240 LKEWICRKEDRSIESLDKDAVIELLKDSSISPETRRVLQIRQESGKTSITKYAAIQRSVC 299

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG-- 358
           +D RL G LQFYGA+RTGRW+G +FQPQNLPR   ++  L + +      E++    G  
Sbjct: 300 NDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGSY 359

Query: 359 --LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
             + S  +R+ +I  NG    +AD + IEAR+ AW   E+W+ + FA    IY  + A+ 
Sbjct: 360 NQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQM 419

Query: 417 FNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           F+ PI+ V+K  + R  GKV ELALGY GG    + M        +   Q+         
Sbjct: 420 FHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMGGADMGLSEDEMQD--------- 470

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                          +   WR     + ++W  + +     V+E
Sbjct: 471 -------------------------------IVNKWRLASPNIKKMWYRVQDAAYTAVRE 499

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-------DCSYLNTA---- 583
                 +RV+ V  +        +   LPS RRL Y   K        + +Y        
Sbjct: 500 R-----KRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQD 554

Query: 584 ---TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DT 639
              T +  R++T+GGKL EN++QAI+RD L + M      GY I++ +HDE+V E P +T
Sbjct: 555 GKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSET 614

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               +  +  +M +   WA GL L A+G+ ++ YRK
Sbjct: 615 AESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/706 (31%), Positives = 325/706 (46%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG    +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++ +LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG- 236

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E I     D        +R+ ++A  G + +V+D + IEARV+AW A +DW ++ F    
Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414

Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IY  T A+ F+  + +V+         K+ R  GKV  LALGYQGG    K M      
Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+++ +     + +   WR  ++ +
Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD- 576
              W +  +     +Q GG     R      L   +    + I LPS R+L Y+    + 
Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLEQ 547

Query: 577 ------CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                   Y           ++TYGGKL ENIVQA +RD+L E M    K GY IV  VH
Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 608 DEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/706 (31%), Positives = 325/706 (46%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG    +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++ +LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG- 236

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E I     D        +R+ ++A  G + +V+D + IEARV+AW A +DW ++ F    
Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414

Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IY  T A+ F+  + +V+         K+ R  GKV  LALGYQGG    K M      
Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+++ +     + +   WR  ++ +
Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574
              W +  +     +Q GG     R      L   +    + I LPS R+L Y+      
Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKE 547

Query: 575 ----GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                   Y           ++TYGGKL ENIVQA +RD+L E M+   + GY IV  VH
Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 608 DEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/724 (37%), Positives = 367/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  A
Sbjct: 189 TGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D +
Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      V+KEQR IGKV EL
Sbjct: 429 GEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  ++   +       E  E+      +Q P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   WK L       ++   +           + M+  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG++  
Sbjct: 662 ACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTH 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/706 (31%), Positives = 322/706 (45%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG    +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++  LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG- 236

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E I     +        +R+ ++A  G + +V+D + IEARV+AW A +DW +  F    
Sbjct: 355 EGIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHG 414

Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IY  T A+ F+  + +V+         K+ R  GKV  LALGYQGG    K M      
Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+++ +     + +   WR  ++ +
Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574
              W +  +     +Q GG     R      L   +    + I LPS R+L Y+      
Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKE 547

Query: 575 ----GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                   Y           ++TYGGKL ENIVQA +RD+L E M    K GY IV  VH
Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 608 DEAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/706 (31%), Positives = 324/706 (45%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG    +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++  LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG- 236

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E I     D        +R+ ++A  G + +V+D + IEARV+AW A +DW ++ F    
Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414

Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IY  T A+ F+  + +V+         K+ R  GKV  LALGYQGG    K M      
Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+++ +     + +   WR  ++ +
Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574
              W +  +     +Q GG     R      L   +    + I LPS R+L Y+      
Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKE 547

Query: 575 ----GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                   Y           ++TYGGKL ENIVQA +RD+L E M+   + GY IV  VH
Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 608 DEAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 199/702 (28%), Positives = 304/702 (43%), Gaps = 74/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIETRS   + K G + YA+     I L AY W+++PVK+ D      +P  L+
Sbjct: 1   MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  V+  A+N+ FE        G + P ++W CT       G  + L     A+  
Sbjct: 61  QALADPNVIKHAYNAAFEWYCL-NCAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
            +   K+  GKALI  FC   K +  +         +    W+LF EYC +DV   RE+ 
Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   P+ + E  LW +D  +N  G R+D DL+     +     ++L ++ + LT   +
Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTG--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           ++      L  +L    G +  ++ + T+  +L   N     + ++  R     ++I K 
Sbjct: 238 QNPNSAAQLLQWLRD-NGTEADNLQKATVAELLGGIN-PNKVRRMLEIRQQLGKTSIKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A     R+RG  Q+YGA+RTGRW+G + Q QNLPR         + +      + 
Sbjct: 296 VAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYDG 355

Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +     +     S  +R+  I S G K VVAD + IEARV+AW+AGE W  + FA    I
Sbjct: 356 VRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  T ++ F  P+++++K       R  GKV  LALGYQGG      M            
Sbjct: 416 YEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A++  L       + + WR  +  +  LW  
Sbjct: 465 -----------------------------ALQMGLTEEELPDIVQRWRQANPRIKGLWYA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KG 575
           +      V++         +       +   +  + + LPS R+L Y           K 
Sbjct: 496 IENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFEKM 555

Query: 576 DCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
              Y      T +     TYGGK+ ENIVQAI+RD L   ++     G  +V  VHDE++
Sbjct: 556 AVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDEVI 615

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P     +V  +C LM +   WA GL LK  G+E+  Y K
Sbjct: 616 IDAPMET--TVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655


>gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
 gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
          Length = 653

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/706 (29%), Positives = 314/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
 gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
          Length = 653

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/706 (29%), Positives = 313/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  S  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKES--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
          Length = 653

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/706 (29%), Positives = 313/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L     T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 200/702 (28%), Positives = 304/702 (43%), Gaps = 74/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G++ Y E     + L AYA+D   V + D  +   +P  ++
Sbjct: 1   MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  V+  A+N+ FE     +  G     ++W CT +     G P+ L     AL  
Sbjct: 61  SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174
            E   K+  GKALI  FC     +            + +  W LF EY  +DV    E +
Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+    +D W++D  +N RG ++D+DLV     +  Q + +L E  +++T   +
Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITG--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  ++   + + L  +++ T+   L          +++  R A + S+I K 
Sbjct: 238 TNPNSRNQLLTWINDNSDLKLEKLTKETVAESLQ--IAEDQVAEVLHIRRALAKSSISKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            ++  AV +DGR+RG LQFYGA+RTGRW+G + Q QNLP        +   I+ +  G  
Sbjct: 296 ESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLP--HDVPVAMDTAIRLVKNGNA 353

Query: 353 IADPLGLA------SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
               L         S  +R+  +A  G  L V+D + IEARVL+W+A E W+   FA G 
Sbjct: 354 RGVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGG 413

Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + +  F  P++K  ++   R  GKV ELALGYQGG     TM             
Sbjct: 414 DIYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMG------------ 461

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A+K  L       +   WR  +  +   W D+
Sbjct: 462 ----------------------------ALKQGLTEDELPDIVHRWRGANPRICGFWYDV 493

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRD-VHIVLPSSRRLVYSDV--------KG 575
                 V+ +   +       + R     +  D + I LPS R+L Y           K 
Sbjct: 494 DGAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKP 553

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
              Y   A  +     TYGGKL ENI QAI+RD L   +    K GY  ++ +HDE+V E
Sbjct: 554 ALHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLE 613

Query: 636 TPDTP--YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P        +  +  +M     WA GL L A+G+ +  Y K
Sbjct: 614 VPKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655


>gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 726

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/724 (36%), Positives = 363/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GIDIP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S  E  LW LDQTINDRG  +D DL       + + +  L      LT G ++++ Q  A
Sbjct: 189 SGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D +
Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      V+KEQR IGKV EL
Sbjct: 429 GEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  ++   +       E  E+      +Q P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLPL AEG++  
Sbjct: 662 ACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTH 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30]
 gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30]
          Length = 653

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/706 (29%), Positives = 313/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L     T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/724 (36%), Positives = 365/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA   L AYA  D PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  A
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D +
Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K++AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      GEDIY   YA +F      V+K+QR IGKV EL
Sbjct: 429 GEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  ++   +       E  E+      +  P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANHRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  
Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           132]
          Length = 653

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L     T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/706 (29%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D  PV   D T+    P    
Sbjct: 1   MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER+   +    ++P + W CT V     GLP+SL    
Sbjct: 61  YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             LN      K + GK LI  F   CK +  +         H  + WQ F +YC RDVE 
Sbjct: 121 EVLNL--QNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W LDQ INDRG ++   L+L   EL    + +L +   K+
Sbjct: 179 EMSIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L ++  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKYA--TGKAKQMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + +  D R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFI 353

Query: 348 NRGETIAD-------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G  L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + A+ F  P+D + K    R  GKV ELALGYQGG    K M       
Sbjct: 414 VFNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   +  +  + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALDMGIDESELQGLVDSWRKANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   +     V+       R+      L     K  + I LPS R L Y   +   +
Sbjct: 494 AFWKGCQDAAIETVR------TRQTHLTHGLRFYMKKGFLMIELPSGRSLAYPKARVGEN 547

Query: 579 YLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   M      G+ IV  VH
Sbjct: 548 SWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E PD     +  + ++M+K   WA+GL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPDGSGG-LKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652


>gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/724 (36%), Positives = 365/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  A
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G + QP NLPR   S+ ++   I A+  G       D +
Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      V+K+QR IGKV EL
Sbjct: 429 GEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  ++   +       +  E+      +Q P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQQAMEALQWTKANQRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  
Sbjct: 662 ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/709 (30%), Positives = 335/709 (47%), Gaps = 86/709 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPS----D 56
            + +DIET S   + + GV+AYA      I L  Y +D + VK+ D T+  A P     D
Sbjct: 2   TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             + L    V+  A+N+ FER      LG  +P ++W CT+V A T GLP +L     AL
Sbjct: 62  FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121

Query: 117 NFSEHLTKMEEGKALIARFCKGSID---SPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
              E   K + GK+LI  FCK       +         H    WQLF EY ++DV A   
Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P++  E++LW LDQ IND G R+D+DL  K+ +     +++L ++  KLT  
Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI--------LSHSNITQLAKDLILNRL 282
            + +      L+M+ F+  G+D+  +++ ++  I         +H  +  L   ++  R 
Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGL--RMLQIRK 297

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
               +++ K   +  AV  DG LRG LQFYGA+RTGRW+G + Q  NLP+ +  +  L +
Sbjct: 298 ELGKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLAR 357

Query: 343 TIQALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            +      +T+         + S  +R+  I S G + VV+D + IEARV+AW+A E W+
Sbjct: 358 DLVKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWR 417

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCG 456
           +  F     IY  + A+ F+ PI+ + K    R  GKV ELALGY GG    K M     
Sbjct: 418 LNVFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAGT 477

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +   +                                           ++   WR     
Sbjct: 478 IPDDEI-----------------------------------------PMIIANWRKASPN 496

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           + +LW++        ++E  +I  +       L      R + I LPS R+L Y D + +
Sbjct: 497 ICKLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIE 551

Query: 577 --------CSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                    +Y      T +  R +T+GGKL ENIVQA +RD L   M+  +  GY IV+
Sbjct: 552 DDEKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVM 611

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDEI+ + P+T   ++  + ++M +   WA+ LPL+ +GYE   Y+K
Sbjct: 612 HVHDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/697 (31%), Positives = 320/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG    +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  +T  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LANPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEGE--LKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +       +D     VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545

Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GY +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|139473888|ref|YP_001128604.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/697 (31%), Positives = 320/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG    +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G  +  +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEGE--LKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +       +D     VR+ ++A +     V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545

Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GY +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 653

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   +     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/697 (31%), Positives = 319/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG    +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
              +   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLVQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G  +  +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEGE--LKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +       +D     VR+ ++A +     V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545

Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GY +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/697 (30%), Positives = 319/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG    +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRTQLLPWL-KEHGYSASGLTKADVEKELKTAEGE--LKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +       +D     VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    +       + +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPV------RLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545

Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      G+ +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639


>gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
 gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
          Length = 653

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
 gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
          Length = 653

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 653

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224]
 gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224]
          Length = 653

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT + +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/702 (30%), Positives = 322/702 (45%), Gaps = 74/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA  +   I L AY+ D + VK+ D  +  A+P ++L
Sbjct: 1   MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+DET +  A+N++FE        GI+ P ++W CT V     G  + L     A+  
Sbjct: 61  DLLKDETCIKYAYNAVFEWWCLNMA-GIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K+  G ALI  FC     +  +        +H  + W+LF EYC +DV    E+ 
Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+ + E  LW+LD  +N  G R+D +LV     + A  R  L E+   +T   +
Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDITK--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L  +L    G ++ ++ + T+  ++   +  + AK ++  R   S +++ K 
Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDDGK-AKRVLEIRQELSKTSVKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + EA+  D R+RG LQFYGA+RTGR++G + Q QNLPR       + + +     GE 
Sbjct: 296 KAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGEL 355

Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +    G      S  +R+  I S G   VV+D + IEARV+AW+AGE+W+++ F     I
Sbjct: 356 LEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  + ++ F  PI+ ++K       RA GKV ELALGYQG       M +       +  
Sbjct: 416 YEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAADMGLTDEEM 475

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           ++                                        +   WR   + +++LW  
Sbjct: 476 KD----------------------------------------IVDRWRKSSKRIVELWYA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KG 575
           L      V++ G     + V           +    I LPS R+L Y           + 
Sbjct: 496 LENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFGQM 555

Query: 576 DCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
              Y+  N  T +     TYGGKLTENIVQAI+RD L E +      G+ IV  VHDEI+
Sbjct: 556 QMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDEII 615

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P +    +  +   MT+  SWAKGL L A G+    Y K
Sbjct: 616 LDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655


>gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
          Length = 653

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
 gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
          Length = 653

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WA+GL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652


>gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47]
 gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47]
 gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 653

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 653

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 312/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKRA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + +D R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A]
 gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A]
          Length = 650

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/703 (29%), Positives = 311/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P       
Sbjct: 1   MNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE    
Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T  
Sbjct: 179 IANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L     T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580
           K   E          ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 653

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE+  I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53]
 gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53]
          Length = 726

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/724 (36%), Positives = 362/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA    PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  A
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G       D +
Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      V+K+QR IGKV EL
Sbjct: 429 GEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  +    +       E  E       +  P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQEATELLEWTKANHRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  
Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
          Length = 653

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/724 (36%), Positives = 364/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  A
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G       D +
Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      V+K+QR IGKV EL
Sbjct: 429 GEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  +    +       E  E       +  P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQEATELLEWTKANHRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  
Sbjct: 662 ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 653

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE+  I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
 gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 726

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/724 (36%), Positives = 363/724 (50%), Gaps = 61/724 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  A
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G       D +
Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      V+K+QR IGKV EL
Sbjct: 429 GEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  +    +       E  E       +  P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQEATELLEWTKANHRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
             M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  
Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721

Query: 672 RYRK 675
           RYRK
Sbjct: 722 RYRK 725


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/697 (31%), Positives = 320/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG    +   +W CT VLA+  GLP+SL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK +  +         H    WQ+F  YC +DV     
Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D ++ DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSANGLTKADVEQELKKAEGE--LKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +       +D     VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + V   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + ++  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545

Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GYD+V  VHDE + E   
Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                +  +  LM++ P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 653

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 312/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   +  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/697 (30%), Positives = 319/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T QS +P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG    +   +W CT VLA+  GLP+SL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK +  +         H    WQ+F  YC +DV     
Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L  +P+ D E D ++ DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSANGLTKADVEQELKKAEGE--LKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           + +       +D     VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + ++  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545

Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GYD+V  VHDE + E   
Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                +  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
 gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
          Length = 653

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/706 (28%), Positives = 312/706 (44%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   +  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +R++L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35]
          Length = 650

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 204/703 (29%), Positives = 311/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P       
Sbjct: 1   MNIDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE    
Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T  
Sbjct: 179 IANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580
           K   E          ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 650

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 203/703 (28%), Positives = 310/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P       
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE    
Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T  
Sbjct: 179 IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580
           K   E          ++ +R+  +   +     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
 gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
          Length = 650

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 204/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P       
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE    
Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T  
Sbjct: 179 IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580
           K   E          ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 219/702 (31%), Positives = 324/702 (46%), Gaps = 77/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS--D 56
           M  L ID+ET     +  VG + Y E     I L AYA+DDEPVK+ D      +P   +
Sbjct: 1   MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
              Y     V+  A N+ FER   K    G+      W CT V A T GLPSSL     A
Sbjct: 61  FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATR 171
           L F E   KM+EGKALI  FCK    +            + ++ W+ F EYCKRDVE  R
Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180

Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+   L     +  E++LW LDQ INDRG R+DL LV    +     +++L E+ + LT 
Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             + +      L+ ++    G ++  +++ ++  ++  S   +  K ++  R   + ++I
Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESK-DKNVKKILELRQLMAKTSI 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K  T+  A   D R+RG LQFYGA+RTGRW+G + Q QNLP+    +    + +     
Sbjct: 298 KKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNGD 357

Query: 350 GETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            ETI           S  +R+  I ++G + +VAD + IEARV+A++A E W++  F  G
Sbjct: 358 FETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDVFKEG 417

Query: 406 EDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            DIY  + +K F  P++K  ++   RA GK+ ELALGY G     +       +  +   
Sbjct: 418 GDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFDKTGSIPDEDLP 477

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           + V       DW +A  H                        + + W            +
Sbjct: 478 KLVS------DWRKASPH------------------------ITQFW-----------WN 496

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN-- 581
           + +     + E  +++         +        + I LPS R+L Y   K +       
Sbjct: 497 VDKAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGKFGSD 551

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     + Q  R  TYG KL ENIVQA +RD L E M    K G+ +V+ VHDE+V
Sbjct: 552 VITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVHDELV 611

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +       SV  +CS+  ++  WA GLPLKA+GYE   Y K
Sbjct: 612 LDVSKE-IGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652


>gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 669

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 250/674 (37%), Positives = 355/674 (52%), Gaps = 35/674 (5%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP- 89
            +  YA +D+PV  WD T  + MP DL  YL+D ++   A NS F+R + +  +   I  
Sbjct: 1   MIITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAG 60

Query: 90  -SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDC 147
             +RW  T V A  +GLP  L   C  L  ++   K +EGKALI  FCK    +S  +  
Sbjct: 61  GIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRA 120

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDL 205
           T   H + W+ F +Y   D+EA R + K+L   +    E  LW  DQ INDRG ++D  L
Sbjct: 121 TSKTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVL 180

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                  +  E+K L +    LTD  ++++ Q  AL  ++    G+DL DM + TL+  +
Sbjct: 181 AEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRI 240

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +   +  + ++L+  RL +S ++  K  TL + VS DGRLRGTLQF GASRTGRW+G +F
Sbjct: 241 ADPELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLF 300

Query: 326 QPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLA 382
           QPQNLPR    +E +   I+AL  G       + + L S  +R CI+A  GKKLVV+DL+
Sbjct: 301 QPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDLS 360

Query: 383 GIEARVLAWIAGEDWKIKAF----------------ANGEDIYVTTYAKAFNTPIDKVSK 426
            IE RVLAW+AGE+WK++AF                  G D+Y   YA+AFN   D V+K
Sbjct: 361 NIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVTK 420

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            QR IGKVMEL LG+ GG   F T A   GLDL + +             +A+S +    
Sbjct: 421 LQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQASV 480

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            Q   F + +++   AC+ +K+ WR  H   +  W ++       +         R   +
Sbjct: 481 KQKRTFGLSEQVF-IACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRKLKI 539

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTATSQLMRERTYGGKLTENI 601
                RR    + I LPS R + Y  ++ +    SY+  NT + +  R +TYGGKL EN 
Sbjct: 540 -----RRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENA 594

Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661
            QA +RD++   M      GY+I LTVHDE+++E PDT  F+   L  L+  NP WA  L
Sbjct: 595 TQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDL 654

Query: 662 PLKAEGYEAKRYRK 675
           PL A G+EA  YRK
Sbjct: 655 PLSAGGFEAYHYRK 668


>gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2]
 gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 650

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 205/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P       
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE    
Sbjct: 121 RLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T  
Sbjct: 179 IANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580
           K   E          ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +      GY IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649


>gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
 gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
          Length = 650

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 204/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P       
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE    
Sbjct: 121 RLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T  
Sbjct: 179 IANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580
           K   E          ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11]
          Length = 650

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 203/703 (28%), Positives = 310/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P       
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H  + WQ F +YC RDVE    
Sbjct: 121 RLQSQ--KDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMT 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P+++ E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T  
Sbjct: 179 IANKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580
           K   E          ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +     + + IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL]
 gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL]
          Length = 650

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 204/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P       
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE    
Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T  
Sbjct: 179 IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +   
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353

Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                       P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F 
Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M          
Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +     + +  +WR  +  ++  W
Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580
           K   E          ++ +R+  +   L     K  + I LPS R L Y     G+ S+ 
Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 316/700 (45%), Gaps = 83/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA  EQ  I L AY++D E V++ D      +P  +L
Sbjct: 1   MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+D  V+  A+N+ FE        GI  P  +W CT V A    LP+ L N   AL  
Sbjct: 61  TALQDMEVIKHAYNAAFEWYCL-NCAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
           +E   K   GK LI  FC       PY          W+ F EY ++DV +  E+  RL 
Sbjct: 120 AEDKKKSAVGKQLIRYFCV-----KPYKP----DAVKWKAFKEYNRQDVVSEMEIENRLS 170

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             P+ + E + W  D  +N  G ++D +LV    ++  Q  ++L  + V+LT   + +  
Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQ--LENPN 228

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               L  ++    G  L +  + T++S L   ++    + ++  R     +++ K   ++
Sbjct: 229 SPTQLLNWV-NAQGYPLENTQKATIESALKE-DLPLKVRRVLEIRQQLGKTSVKKYEAMT 286

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---- 352
             +    R+RG  QFYGAS+TGR+SG + Q QNLPR     E L +T + + R +     
Sbjct: 287 NTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYL--EPLAETRECVKRQDYETLK 344

Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                     S  +R+  I S G + VVAD + IEARV+AW+A E W  + FA    IY 
Sbjct: 345 LLFDSIPDTLSQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGKIYE 404

Query: 411 TTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            T ++ F+ PI+K++K       R  GKV  LALGYQGG     +M              
Sbjct: 405 ATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMG------------- 451

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                      A+K  L       +   WRA +Q ++ LW  + 
Sbjct: 452 ---------------------------ALKMGLSEEELPEIVTRWRAANQRIVALWSAVG 484

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-------KGDCS 578
                 V++G +     +       ++   R + I LPS R+L Y           G+  
Sbjct: 485 SYALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFGGESL 544

Query: 579 YL---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           Y    N  T +     T+GGKL ENIVQ I+RD LCE +   T  GY IV  VHDE++ +
Sbjct: 545 YFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDEVIVD 604

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  +V  LC +M +   WAKGL LK  G+  + Y+K
Sbjct: 605 AGMD--LTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 218/696 (31%), Positives = 324/696 (46%), Gaps = 77/696 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +L ID+ET S  P+ K G   Y +     I L AY++DDEPV++ D T+   +P  ++  
Sbjct: 2   ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMTKD-PLPERVVDA 59

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L ++ +   A N+ FE +  KK    D     W CTSVLA    LP+SL N   AL   E
Sbjct: 60  LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118

Query: 121 HLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
              K   GK LI  F    K +  +P       +  + W  + EY ++DV   R + KRL
Sbjct: 119 --AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRL 176

Query: 178 IPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           + L     E + WLLDQ IN RG ++D++LV        +  ++  E    LT   + + 
Sbjct: 177 LSLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTG--LENP 234

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             T  L+ +L    G DL  M +  + ++L+  +I    + ++ NR     S+I K   +
Sbjct: 235 NSTMQLKEWLTARLGYDLETMRKDDVSNLLAQ-DIPSDVRKVLQNRQVLGNSSIKKYLAM 293

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA- 354
             AV SDGR+ G LQFYGA R+GRW+G V Q QNLPR    +    + +      E +  
Sbjct: 294 KNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDL 353

Query: 355 ---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
              +P  +    +R+ ++A +G + +VAD + IEARV+AW+A E W+   FA G DIY  
Sbjct: 354 LYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCA 413

Query: 412 TYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           + +  F+ P++K  V+   R  GKV ELALGY GG    K M S   +  ++        
Sbjct: 414 SASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEIPEKEL------- 466

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                               + +AWR     + + WKD      
Sbjct: 467 ----------------------------------PGIIEAWRQASPRITKFWKDADSAAK 492

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT----- 584
            VV+ G  +   +      +   + K  + I LPS RRL Y+  +   +   + +     
Sbjct: 493 QVVRTGEPVRIIQ----GNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDG 548

Query: 585 -----SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                +   R  TYGGKL ENIVQA++RD L   M   +K GY IV  +HDE+V E P  
Sbjct: 549 MDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIG 608

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              S+  +  +M +   W +GL L A G+E   Y K
Sbjct: 609 -VGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 197/709 (27%), Positives = 299/709 (42%), Gaps = 80/709 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIETRS   + K G + YA+     I L AY WDD PV++ D T   + P ++ +
Sbjct: 4   HHLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWE 63

Query: 60  -YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             LRD  V+  A+N+ FE     +  G   P  +W CT       G  + L     A+  
Sbjct: 64  EALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGL 122

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K+  GKALI  FC   K +  +      +  H    W LF EYC++DV    E+ 
Sbjct: 123 PQDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEIL 182

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+ + E  LW LD  +N  G R+D  L+     +     +KL  + V+LT   +
Sbjct: 183 RRLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTG--L 240

Query: 233 RSSRQTYALRMYLFLITGIDLVD------MSEGTLKSILSHSN-ITQLAKDLILNRLASS 285
            +      L  ++         D      + + T++  L   + + +    ++  R    
Sbjct: 241 DNPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLG 300

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            +++ K   +  A     R+RG  Q+YGA+RTGRW+G + Q QNLPR         + + 
Sbjct: 301 KTSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELV 360

Query: 346 ALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                + +     +     S  +R+  I S G K VVAD + IEAR +AW+AGE W  + 
Sbjct: 361 KAKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEV 420

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCG 456
           FA    IY  T A+ F  P+++++K       R  GKV  LALGYQG       M     
Sbjct: 421 FATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMG---- 476

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A+K  L       +   WR  ++ 
Sbjct: 477 ------------------------------------ALKMGLTEDELPDIVTRWRNANKR 500

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +  LW  +      V+Q         +       +   +  + + LPS R+L Y      
Sbjct: 501 ICGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQ 560

Query: 577 CSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
            +               T +   + TYGGK+TENIVQAI+RD L   ++   + G   V 
Sbjct: 561 ENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVF 620

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDE++ + P     +V  +C LM +   WA GL LK  G+E+  Y K
Sbjct: 621 HVHDEVIIDAPMET--TVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 206/698 (29%), Positives = 320/698 (45%), Gaps = 75/698 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L IDIET S   +   GV  Y +     I L AY+ D   V+L D  +   +P+ +L
Sbjct: 80  IKILSIDIETYSDNEITN-GVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  ++  A N+ FER+   K LG+ +   +W CT + A   GLP+SL++    L  
Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K+ EG  LI  F   CK +  +         H    W  F  YC RDVE  + + 
Sbjct: 199 KH--KKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQ 256

Query: 175 KR-----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           ++     L P++  ER L++ DQT+ND+G  ID +L      +  + + +L  ++ ++T+
Sbjct: 257 RKVCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN 316

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             + +      L+ +L    G  +  +++   K + + +  ++  K ++  R  SS +++
Sbjct: 317 --LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGA--SEDVKRVLYLRSMSSKTSV 372

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K   ++ A  SD +L   LQFYGA +TGRW+G + Q  NLPR    +  L + +   N 
Sbjct: 373 KKYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKND 431

Query: 350 GETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            E +    G    + S  +R+  IA     L V D + IEARV+AW+AGE+W++K F   
Sbjct: 432 FELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGS 491

Query: 406 EDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + A+ F      ++ +   R  GK+ ELALGY+GGA   K M +          
Sbjct: 492 GRIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADKMGLSD--- 548

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                     PE A            +   WR     +++LW+D
Sbjct: 549 --------------------------PEIA-----------QIVSGWRNSSPNIVKLWRD 571

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL 580
           +       +     I  ++      L+ R+    + I LPS R L Y   K       Y+
Sbjct: 572 VERAAKEAILSDRIIKLKQ----GGLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYM 627

Query: 581 --NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP- 637
             N  T Q +   TYGGKL ENIVQAI+RD L E +    K GY+I   VHDEI++E P 
Sbjct: 628 SQNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPT 687

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           D    ++  + ++     ++A  LPLK EGY    Y K
Sbjct: 688 DESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 200/699 (28%), Positives = 303/699 (43%), Gaps = 70/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET SP  +   GV+ Y+E     I L +YA+    V + D      +P D++
Sbjct: 1   MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+ + V+  A+N+ FE     +  G     ++W CT +     G P  L     AL  
Sbjct: 60  LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
           ++   K + G ALI  F   CK +  +         H    W  +  Y K+DV    E +
Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+ +     W +D  +N  G  ID  LV     +  + +K L E+  +LT   +
Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L   T ++L  +++ ++ + ++ ++   LAK ++  R   + S++ K 
Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDAD--DLAKKVLTIRKKLAKSSVSKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA----LN 348
             ++ A   DGRLRGTLQFYGA+RTGRW+G + Q QNLPR   +     +++      + 
Sbjct: 295 EMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRVG 354

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
            G    D     S  +R+ IIA  G  L VAD + IEARV+AW++GE W+ K FA G DI
Sbjct: 355 LGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGDI 414

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F  P+ K  V+   R  GKV ELALGYQGG    K M               
Sbjct: 415 YCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       +   WR     +++ W  + +
Sbjct: 461 --------------------------ALDMGLTEEELPNIVGLWRQASPNIVKFWYTVEK 494

Query: 527 GFACVVQEGGSISA-RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGDC 577
                V  G  ++    +     +      R + I LPS R+L Y D         K   
Sbjct: 495 AAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKEAV 554

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
            +     +  + E TYGGKL ENI QA++RD L   +   + NG   ++ +HDE V E P
Sbjct: 555 HFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIEVP 614

Query: 638 DTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYRK 675
                    +          WA+GL L A G+    Y K
Sbjct: 615 KDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 215/710 (30%), Positives = 329/710 (46%), Gaps = 92/710 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S + + + GV+ YAE     + L +Y+ D  PV   D      +P ++L
Sbjct: 1   MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL--------------GIDIPSKRWICTSVLARTNG 104
             L D++V+  A N  FER+     L              G  I  + W C  + +R  G
Sbjct: 61  SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC--TRANHVQAWQLFGEY 162
           + SSL +    L       K++EGK LI  FC    D         +++  + W+ F EY
Sbjct: 121 MMSSLDDMGKLLR--LKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEY 178

Query: 163 CKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +RDVE   ++ + L  +P+ D   + + +DQ INDRG  +D     K  EL +  +K+L
Sbjct: 179 NRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKEL 238

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
              + +LT   + +      ++ +L +  GI+   + + ++  +L+ +      K++++ 
Sbjct: 239 FPKLKELT--RLDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLLASA--PDDVKEVLML 293

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               S S++ K +T+  A   DGR RG   FYGA+RTGR++G + Q QNLP+        
Sbjct: 294 YQQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAE 353

Query: 341 TQTIQALNRG----ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           T+ +          E   D   + S  +R+  I   GKK VVAD + IEARV++W+AGE 
Sbjct: 354 TKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGET 413

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           W+++AFANGEDIY    AK F  P++K  V+   R  GK+ ELA GY G     K M   
Sbjct: 414 WRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMGGT 473

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                               E  + D  + +    + + WR   
Sbjct: 474 ------------------------------------ELNLTDDELYS----LVEDWRKTS 493

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +++LW D+      V+ +  S++        RL        + I LPS RRL Y   K
Sbjct: 494 PNIVKLWSDVQSVAVKVITDQSSMT------FGRLKFSYEIGILFIELPSGRRLAYVRPK 547

Query: 575 GD--------CSYLNTAT-SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
            +         +Y       + +R  TYG KL ENI Q I+RD+L   M  A     DIV
Sbjct: 548 VEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSM--AAMKDMDIV 605

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             VHDE++ E    P  +V  +C LM + P WA+GL L+A+GYE + Y K
Sbjct: 606 GHVHDEVIVEC--DPDTTVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653


>gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H]
          Length = 726

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/729 (34%), Positives = 352/729 (48%), Gaps = 57/729 (7%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDEPV++WD T  S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171
           C  L  S    K + GKALI RF K +  +      T   H   W LF +Y   D+ A R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+F +L     S+ E  +  LDQ INDRG+++D+ L     E + + + +L E+  +   
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        LR    L     + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357

Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           IY  T  K F    D + KE+   R IGK  EL LGY GG   F   A + GLDL   ++
Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMTK 477

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGTACELVKKAWRA 512
            +  T     W      + W + Q     P           + DK +   C+ +K+ WR 
Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKR------DVHIVLPS 564
            H   +  W+D+ +     ++  G    +  R     R V   +         + + LPS
Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597

Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            R + Y                   +V+      N  T Q   + TY GKL EN  QA+ 
Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL AE
Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717

Query: 667 GYEAKRYRK 675
           G E KRY K
Sbjct: 718 GAEMKRYAK 726


>gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G]
          Length = 726

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/729 (34%), Positives = 352/729 (48%), Gaps = 57/729 (7%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDEPV++WD T  S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171
           C  L  S    K + GKALI RF K +  +      T   H   W LF +Y   D+ A R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+F +L     S+ E  +  LDQ INDRG+++D+ L     E + + + +L E+  +   
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        LR    L     + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357

Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           IY  T  K F    D + KE+   R IGK  EL LGY GG   F   A + GLDL   ++
Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGTACELVKKAWRA 512
            +  T     W      + W + Q     P           + DK +   C+ +K+ WR 
Sbjct: 478 TMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKR------DVHIVLPS 564
            H   +  W+D+ +     ++  G    +  R     R V   +         + + LPS
Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597

Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            R + Y                   +V+      N  T Q   + TY GKL EN  QA+ 
Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL AE
Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717

Query: 667 GYEAKRYRK 675
           G E KRY K
Sbjct: 718 GAEMKRYAK 726


>gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3]
 gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2]
          Length = 726

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/729 (34%), Positives = 352/729 (48%), Gaps = 57/729 (7%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDE V++WD T+ S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171
           C  L  S    K + GKALI RF K +  +      T   H   W LF +Y   D+ A R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+F +L     S+ E  +  LDQ INDRG+++D+ L     E + + + +L E+  +   
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        LR    L     + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357

Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           IY  T  K F    D + KE+   R IGK  EL LGY GG   F   A + GLDL   ++
Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGTACELVKKAWRA 512
            +  T     W      + W + Q     P           + DK +   C+ +K+ WR 
Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWRE 537

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKR------DVHIVLPS 564
            H   +  W+D+ +     ++  G    +  R     R V   +         + + LPS
Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597

Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            R + Y                   +V+      N  T Q   + TY GKL EN  QA+ 
Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL AE
Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717

Query: 667 GYEAKRYRK 675
           G E KRY K
Sbjct: 718 GAEMKRYAK 726


>gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 712

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 253/711 (35%), Positives = 353/711 (49%), Gaps = 61/711 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+   HNS F+R + +   GI+IP +RW  +   A  + LP +L   C  L       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180
           K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  A
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    S
Sbjct: 249 LLHHLSTEHGVVLPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357
            DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D +
Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVM 368

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402
            L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K++AF               
Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHS 428

Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                                      G+DIY   YA +F      V+KEQR IGKV EL
Sbjct: 429 GEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQEL 488

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ALGY GG   F   A+   +DL+  ++   +       +  E+      +  P F + D+
Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQQAVEALQWTKANHRPTFGLSDR 547

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               AC++ K+AWR  H  +   W+ L       +    +           + ++  +  
Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601

Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611
           + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L 
Sbjct: 602 LRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662
             M      GY IVLTVHDEI++E  D   F+   L +LM   P   +G P
Sbjct: 662 ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/734 (35%), Positives = 360/734 (49%), Gaps = 65/734 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTE----------QS 51
           LF+D ET S   L KVG +AYAE     I L +YA+DD P K+WD T            +
Sbjct: 5   LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64

Query: 52  AMPSDLLQYLRDET---VMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           + P DLL+ LR      V  V HN  +F+R++ ++ LG+DIP +    T V A  + LP 
Sbjct: 65  SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRD 166
           SL   C  LN    L K + GKALI RFCK +  +       R  H   W+ F  Y + D
Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184

Query: 167 VEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + A RE++ ++      D E ++  LDQ INDRG+ +D DL       +A  R +L E  
Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                G +  +     LR    L     + +  + TL  +L  +++   A+ +I  RL +
Sbjct: 245 QATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPDEARQVIEMRLGA 301

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + +A  K   L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R    E+ L + I
Sbjct: 302 ASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARGI 361

Query: 345 QALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
           +AL RG  E   D + LA+  VR CII + GKKLVVAD + +E R LAW+AGED  +  F
Sbjct: 362 EALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDTF 421

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             G DIY  T  K F    D V   +R IGK  EL LGY GG   F T + + GLDL++ 
Sbjct: 422 RAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEEM 481

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ------------YPEFAVKDKLIGTACELVKKAW 510
           +  +  T     W  A   + +M+ Q                 V  K     C+ +K+ W
Sbjct: 482 AVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRMW 541

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISA---------RRVANVPRLVMRRHK--RDVH 559
           R  H   +Q W DL E     +   G+            +R   + R + R  K    + 
Sbjct: 542 RESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWLK 601

Query: 560 IVLPSSRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           I LPS R L Y                     +      N  T Q   + TYGGKL EN+
Sbjct: 602 IELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAENV 661

Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661
            QA+ RDIL   M      GY+I+L+VHDE+++ETPDT  ++V  L  LM   P+WAKG 
Sbjct: 662 TQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKGF 721

Query: 662 PLKAEGYEAKRYRK 675
           PLKAEG+E  RY+K
Sbjct: 722 PLKAEGWEGYRYKK 735


>gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 631

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 196/685 (28%), Positives = 298/685 (43%), Gaps = 85/685 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T   + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A++  +     + +  +WR  +  ++
Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577
             WK   E          ++ +R+  +   L     K  + I LPS R L Y     G+ 
Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           S+ +            +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKN 654
           DE++ E P      +  + ++M K 
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKP 631


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 201/701 (28%), Positives = 308/701 (43%), Gaps = 85/701 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + +D+ET S   + K GV+ YA  E   I   +Y+ +   V L D T++   P  L 
Sbjct: 1   MR-IDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLK 57

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGI------DIPSKRWICTSVLARTNGLPSSLKNA 112
            ++ +      A N++FERI                  K W    V A+  GLP+SL+  
Sbjct: 58  NHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERC 117

Query: 113 CLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVE 168
              L   E   K   GKALI  F   CK +  +         H  + W+ +GEY  +DV 
Sbjct: 118 ASYLGLEEQ--KDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVV 175

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               + ++L  +P+ D E D +  DQ INDRG  +D +LV         + + L  ++  
Sbjct: 176 TQMAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKA 235

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +      L  +L    G     +++  ++  L  +      K ++  +L ++ 
Sbjct: 236 ITG--LANPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEGE--LKRVLELKLQTAM 290

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +    
Sbjct: 291 SSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVK 350

Query: 347 LNRGETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
               + +       +D     VR+ ++A +G    V+D + IEARV+AW AGE W++  F
Sbjct: 351 KRDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 410

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           +    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M           
Sbjct: 411 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG---------- 460

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   +     + +   WR  ++ ++Q WK
Sbjct: 461 ------------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWK 490

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------ 576
           D+       ++    I       + +L  R  K  + I LPS R L Y+  K +      
Sbjct: 491 DVQRAAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 544

Query: 577 -CSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
              Y           + TYGGKL ENIVQA +RDIL E +      G+ +V  VHDE + 
Sbjct: 545 KIIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAII 604

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E       ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 605 E---GSGLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/763 (33%), Positives = 355/763 (46%), Gaps = 91/763 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
             +LF+D ET S   L KVG +AYAE     I +C YA D+  V+ WD TE   MP +L 
Sbjct: 4   FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELR 63

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + LR     +  + +A+  LF+R++ ++  GID+P  +   T ++A  + LP SL   C 
Sbjct: 64  KALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQ 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATREL 173
            L       K + GKALI RFCK +  +      TR  H + W  F  Y   D+ A RE+
Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREV 183

Query: 174 FKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           + R+     +  E ++ L+DQ INDRG+ +D+DL     + +   +++L E+  +   G 
Sbjct: 184 YWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFGGK 243

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           +  +    ALR    L     + +  + TL  +L   +     K LI  RL +S +A  K
Sbjct: 244 LTGNDFLPALRD---LAPAFTIHNAQKSTLNDLLEDPDFPDEGKVLIEMRLGASSTASTK 300

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI------------ 339
            N L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R E S++             
Sbjct: 301 YNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESD 360

Query: 340 ---------LTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
                    LT  I +L RG      D   L +  VR CII + GKK VVAD + +E R 
Sbjct: 361 VAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRG 420

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKVMELALGYQGGA 445
           LAWIAGE   +  F  G DIY  T  K F    + +    K+ R IGK  EL LGY GG 
Sbjct: 421 LAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGGGV 480

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ----DQYPEFAVKD----- 496
             F   A + GLDL   ++ +K T     W  A+  + + +     + P+   KD     
Sbjct: 481 AAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERPTY 540

Query: 497 ---KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR------------ 541
              K +   C+ +K+ WR  H   +  W +L +   C ++  G                 
Sbjct: 541 ILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGKKAL 600

Query: 542 ---RVANVPRLVMRRHKR-------DVHIVLPSSRRLVYSDV------------------ 573
              R            +         + I LPS R + Y  +                  
Sbjct: 601 KIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKKRTS 660

Query: 574 -KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
            +      N  T Q   + TYGGKLTENIVQA+ RDIL   M      GY+IVL+VHDE+
Sbjct: 661 TRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVHDEL 720

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++E PDT  ++   LC+LM   P WAKG PL AEG    RYRK
Sbjct: 721 ITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 230/610 (37%), Positives = 329/610 (53%), Gaps = 24/610 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  YL D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D 
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--ATSQ 586
           +Q  G     R     +L +RR K  + I LPS R L Y   +   G  +Y+ T   + +
Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597

Query: 587 LMRERTYGGK 596
             R +TYGGK
Sbjct: 598 WERLKTYGGK 607



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 229/610 (37%), Positives = 329/610 (53%), Gaps = 24/610 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  Y  D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D 
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A S +    +    + + +K+    C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--ATSQ 586
           +Q  G     R     +L +RR K  + I LPS R L Y   +   G  +Y+ T   + +
Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597

Query: 587 LMRERTYGGK 596
             R +TYGGK
Sbjct: 598 WERLKTYGGK 607



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/702 (33%), Positives = 347/702 (49%), Gaps = 33/702 (4%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L++D ET S + L +VG   YAE A   L AYA  D P ++WD T +  M  +L   + D
Sbjct: 5   LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAMDD 63

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                 AHN+ F+R +        +P    +RW C+  +A ++ LP  L + C  L    
Sbjct: 64  ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            + K+ +GK L+  F +   D+      TR  H   W+ F +Y   D+ A RE  +R+  
Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183

Query: 180 LSDGERDL--WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +     +  W LDQ IN RG+++D  L         +E+ ++     +L+ G      Q
Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQFT-PGQ 242

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
               R+YL    G +L +   GT + +L    +    +++I   +AS+ ++  K   L  
Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTFQVMLRDPGLPADVREMIELAIASNKTSTAKYAALDP 302

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER-SEEILTQTIQALNRG---ETI 353
           AVS DGR RG LQF GASRT RW+G +FQPQNLP +   S E++   I+ L  G      
Sbjct: 303 AVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALFF 362

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDI 408
            + + L +  +R C++A+ GKKLVVADL+ IE RVLAWIA E+WK+KAF       G D+
Sbjct: 363 DNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPDL 422

Query: 409 YVTTY-AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           Y  T  +     P +   K + A GKV +LA GYQGG   ++T A   GL +  F   ++
Sbjct: 423 YNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTIQ 482

Query: 468 STSTFEDWEQA-ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                +   +A E+   W   Q     + D++   A E  K AWRA+H    + W  L  
Sbjct: 483 QMVPAQHVAKAWENLASWGHPQLESLEI-DEIEWVASETCKLAWRARHPATSKFWYALGG 541

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------------ 574
                ++  GS+         R V  R ++ + + LPS R L Y +              
Sbjct: 542 AAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAY 601

Query: 575 -GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
            G+ S     T Q +R  T+GGK+T N  Q I+RDIL   M  A   GY  VL+VHDE +
Sbjct: 602 WGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEAL 661

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +E PDT  F+   L  ++  NP+WA  LPL A G+EA RY+K
Sbjct: 662 TEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/711 (29%), Positives = 315/711 (44%), Gaps = 86/711 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSD--- 56
            KL+IDIET S   +   G++ YAE     + L AYA DD  V+L D T+   +      
Sbjct: 4   HKLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLV 63

Query: 57  -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            + + L  +  +  AHN+ FE    K+ L I I   RW CT V     G P+SL+    A
Sbjct: 64  GVRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEA 123

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATR 171
           L+  E   K+  GKALI  FCK    +            +  + W+LF EYCKRDVE  R
Sbjct: 124 LDMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVAR 183

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+ K L  +  G    W+ D  +N RG  +D  LV     +  + +    + I ++T   
Sbjct: 184 EIDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITG-- 241

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           + + R    +  +L      ++  ++  ++K++L  S++T  A+ ++        ++  K
Sbjct: 242 VDNPRSRAQVLDWLNDTLDEEITSLNAASVKALLE-SDLTDDARAVLTAWQGLGKTSTKK 300

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
             TL  A   D R+RG LQFYGASRTGRW+G + QP NLPR +         +      +
Sbjct: 301 YETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYNLNQAGELVKAGHKK 360

Query: 352 TI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
            I           S  +R+C +   G K V+ D + IEARVLAW+AGE W ++ F     
Sbjct: 361 DIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGDGK 420

Query: 408 IYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           IY  T A+ +N     + K       R  GK+  LALGYQG     + M           
Sbjct: 421 IYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMG---------- 470

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +D+        + +AWR  +  + +LW+
Sbjct: 471 ------------------------------ASEDEFTDDELRGLVRAWRVANPCIAELWR 500

Query: 523 --------DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV- 573
                    +++ F         IS +   N    +      ++ I LPS R L Y +  
Sbjct: 501 YTEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGI------NLAIGLPSGRELYYHNPV 554

Query: 574 --KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625
              G   Y +   +   +E+TYGGKL ENIVQAI+RD+L + +   TK          IV
Sbjct: 555 IVDGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIV 614

Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L VHDE+V E        V  L   + +  PSWA+GLPLK E + +  Y+K
Sbjct: 615 LHVHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665


>gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1]
          Length = 698

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 239/694 (34%), Positives = 331/694 (47%), Gaps = 55/694 (7%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----DETVMCVAHN-SLFERILFKKTLGID 87
           AYA+DDEPV++WD T  S MP DL + LR     +  +  V HN S+F+R++ K   G D
Sbjct: 8   AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           IP    I T + A  + LP SL   C  L  S    K + GKALI RF K +  +     
Sbjct: 68  IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127

Query: 148 -TRANHVQAWQLFGEYCKRDVEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLD 204
            T   H   W LF +Y   D+ A RE+F +L     S+ E  +  LDQ INDRG+++D+ 
Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           L     E + + + +L E+  +   G +        LR    L     + +  + TL  +
Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDL 244

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L+  ++   A  +I  RL ++ +A  K N L    SSD R RG +Q+ GA RT R++G  
Sbjct: 245 LADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKG 304

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLA 382
           FQPQNL R    ++ L + I AL +G      D   L +  VRSCII   G K VVAD +
Sbjct: 305 FQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADYS 364

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELAL 439
            +E R LAW+AGE+  +  F  G DIY  T  K F    D + KE+   R IGK  EL L
Sbjct: 365 NVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGL 424

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY----PEFA-- 493
           GY GG   F   A + GLDL   ++ +  T     W      + W + Q     P     
Sbjct: 425 GYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEK 484

Query: 494 ------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVAN 545
                 + DK +   C+ +K+ WR  H   +  W+D+ +     ++  G    +  R   
Sbjct: 485 DDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVK 544

Query: 546 VPRLVMRRHKR------DVHIVLPSSRRLVYS------------------DVKGDCSYLN 581
             R V   +         + + LPS R + Y                   +V+      N
Sbjct: 545 FSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGEN 604

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
             T Q   + TY GKL EN  QA+ RD+L   + N   NGY IVL VHDEI+ ETPD P 
Sbjct: 605 QLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPE 664

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++V  L  LM + P WA+G PL AEG E KRY K
Sbjct: 665 YNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698


>gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407]
          Length = 598

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 223/588 (37%), Positives = 322/588 (54%), Gaps = 22/588 (3%)

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEY 162
           G   +L   C  L   +   K +EGKALI  FCK    +S     T   H + W+ F  Y
Sbjct: 16  GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75

Query: 163 CKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              D+EA RE++KRL   +    E  LW  DQ INDRG  +D++L     + + QE+K+L
Sbjct: 76  AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            +   ++TDG ++++ Q  AL  ++    G++L DM   TL+  ++  ++    K+L+  
Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAI 195

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           RL +S ++  K   L + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +
Sbjct: 196 RLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQI 255

Query: 341 TQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
            + I+AL  G       + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+W
Sbjct: 256 DEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEW 315

Query: 398 KIKAFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           K+ AF       G D+Y   YAKAF+   D V K  R IGKVMEL LGY GG   F T A
Sbjct: 316 KLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFA 375

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              GLDL   +         +   +A+S +     +   + + +++   AC+ +K+ WR 
Sbjct: 376 LVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRR 434

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            H      W +L       +      + ++      L +RR    + I LPS R + Y  
Sbjct: 435 AHPATCDFWYELECTVRTAI-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPS 489

Query: 573 V---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
               +G+ +Y+  N+ + +  R +TYGGKL EN+ QA +RD+L   M      GY IVLT
Sbjct: 490 PVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLT 549

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE+++E+PDT  F+   L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 550 VHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 224/686 (32%), Positives = 338/686 (49%), Gaps = 47/686 (6%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---ID 87
            +  +A DD PV  WD T  + MP +L + +         +  +F+R++ K         
Sbjct: 1   MIWTWAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYAR 60

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYD 146
           +P  +W  T V A  +GLP  L   C   N      K +EG  LI  FCK    +S    
Sbjct: 61  MPEHKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRR 120

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI----PLSDGERDLWLLDQTINDRGYRID 202
            TR  H + W  F  Y   D+ A R + K +     P +  E  LW  DQ IN RG ++D
Sbjct: 121 ATRETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMD 180

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           ++L       I + +K+L    V+LTDG +  + Q   L  +L     +DL DM + TL+
Sbjct: 181 VELAEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLE 240

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             ++  ++    ++L+  RL ++ ++  K  TL   VS+DGRLRG +QF GA RTGR + 
Sbjct: 241 RRINDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAH 300

Query: 323 CVFQPQNLPRQ----------------ERSEEILTQTIQALNRGET---IADPLGLASDC 363
            +FQP N+PR                   +E      I AL  G       + +GL ++ 
Sbjct: 301 RLFQPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANV 360

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFN 418
           VR  I+A +GK+L V+DL+ IE R  AW+AGE WK++AF +     G D+Y   YA+AF 
Sbjct: 361 VRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFG 420

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS---TSTFEDW 475
             ++ V K  R +GKVMELAL Y+GG   F T      +DL      V +   T   E  
Sbjct: 421 VAVEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIV 480

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A     W   +     +   +   AC+++K+ WR  H      W +L +     +   
Sbjct: 481 REARGMWEWAVKKRRTLGLPQDVF-IACDILKRLWRRAHPQTSSYWPELRDAAILAISSP 539

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--NTATSQLMR 589
           G     +  +  R+++RR    + + LPS R+L Y   +    G+ SY+  N  T +  R
Sbjct: 540 G-----KTVHARRVILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKWQR 594

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
            +TYGGK+ EN+ QA++RD+L          GYDIVL++HDE+++E PD   +S   L S
Sbjct: 595 TKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADELSS 654

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L+   P+WA+G+PL A G+ A RY+K
Sbjct: 655 LIATAPAWAEGMPLAAAGFSAYRYKK 680


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 221/582 (37%), Positives = 316/582 (54%), Gaps = 19/582 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  Y  D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D 
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A S +    ++   + + +K+  T C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +Q  G     R     +L +RR K  + I LPS R L Y   
Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSA 579


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 182/618 (29%), Positives = 277/618 (44%), Gaps = 90/618 (14%)

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+ +    W CT + + T GLP SL++    L   +   K+ EGK LI  FC       P
Sbjct: 5   GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQ--KLTEGKNLIKYFC------LP 56

Query: 145 YDCTRAN----------HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQ 192
            + T+ N            + W+LF  Y KRDVE    + ++L   P+ D     + LDQ
Sbjct: 57  CNPTKVNGGRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQ 116

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
           TINDRG  ID   V    +L  + +  L  ++  +T   + +      +R +L    G++
Sbjct: 117 TINDRGIEIDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWL-KEHGLE 173

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           +  + +  +   L    + +   +++  R   + S++ K   +  A   D R RG  +FY
Sbjct: 174 MESLGKKEVAKELK--TVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFY 231

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCI 368
           GA+RTGR++G + Q QNLP+    +    +++      E +     D     S  +R+  
Sbjct: 232 GANRTGRFAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAF 291

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSK 426
           I   G K +VAD + IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K  V+ 
Sbjct: 292 IPRTGFKFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNG 351

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R  GK+ ELALGY G     K M                                   
Sbjct: 352 HLRQKGKIAELALGYGGSVGALKAMG---------------------------------- 377

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                 A+   L     + +  AWR  +  V  LW D+       V E  S+        
Sbjct: 378 ------ALDMGLTEEELQPLVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISVRTH----- 426

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKL 597
             +V       + I LPS R L Y   + + +              T +  R  +YG K 
Sbjct: 427 -NIVFTYKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKF 485

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QAI+RDIL   M+  T   Y IV  VHDE + ET      SV ++C LM + P W
Sbjct: 486 VENITQAIARDILLYAMQ--TLKEYRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPW 541

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A+GL L+A+GYE + Y+K
Sbjct: 542 AEGLVLRADGYECEFYKK 559


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 209/700 (29%), Positives = 315/700 (45%), Gaps = 76/700 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S   L   GV+ YA      I L +Y + DEPV   D  +   +PS +L+
Sbjct: 3   KPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLR 62

Query: 60  YLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            LRD   + VAHN+ FER+     L G  +    W CT V     GLP SL     AL  
Sbjct: 63  ALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
              + K +EGK LI  F   CK +  +         H  + W+ +G+Y + DVE    + 
Sbjct: 123 --DVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGIS 180

Query: 175 KRL---IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +L     L   E   +  DQ IND G  +D+  V +  +L  + +K+    + +LT   
Sbjct: 181 DKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG-- 238

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL---ILNRLASSGSA 288
           + S  +   L+ +     G  +  + +   +  L+   + Q   ++   I     + G+A
Sbjct: 239 VESVTKVQQLKAWA-AAQGYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAA 297

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K + +   +  DG ++G L+F GA  T RW+G   Q QNLPR     + L    Q + 
Sbjct: 298 VAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVA 357

Query: 349 RGETIA-----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
           +G+T+      +P+ + +  VR+ +      +  V+D + IEARV+AW AGE W +KAF 
Sbjct: 358 KGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFE 417

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +GEDIYV T +K ++   ++ ++  R  GK   LALGYQGGA     M            
Sbjct: 418 DGEDIYVATASKMYHVTGEE-AEAMRQKGKQATLALGYQGGANALIVMG----------- 465

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A++  +       + + WR  +  ++ LW  
Sbjct: 466 -----------------------------ALRAGIPEEELPELVQLWRKANPNIVNLWHT 496

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRD--VHIVLPSSRRLVYSDVK---GDCS 578
           + +     +  GG+   R V    +LV+     +  + + LPS R+L Y D K      S
Sbjct: 497 VDKAARMAINNGGA--KRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKIS 554

Query: 579 YLNTATSQLMR--ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           YL        R    TYGGKLTEN+VQA SRD+L   +      G   V  VHDE ++  
Sbjct: 555 YLKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIV 614

Query: 637 PDTPYFSVGTLCSLMTKN-PSWAKGLPLKAEGYEAKRYRK 675
           P+     +  + +LMT   P WA GLPL +EG   K YRK
Sbjct: 615 PEGTK--IEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 205/564 (36%), Positives = 296/564 (52%), Gaps = 15/564 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A  DEPV +WD T    +P  L + + D
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63

Query: 64  ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +  +     RW  T V A  +GLP +L   C  L   +  
Sbjct: 64  PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +    +TDG ++++ Q  
Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K  +L + V
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMADPDLPSAVKELLAIRLQASTTSTSKYKSLMKGV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           SSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    ++ + + I+AL  G       + 
Sbjct: 304 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDNI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CI+A  GKKLVV+DL+ IE R LAW+AGE WK+ AF       G D+Y  
Sbjct: 364 MELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   D V K QR IGKVMEL LG+ GG   F T A   GLDL + +        
Sbjct: 424 AYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +   +A++ +     +   + + +++   AC+ +K+ WR  H      W +L       
Sbjct: 484 RDVIREAKNWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRAA 542

Query: 532 VQEGGSISARRVANV-PRLVMRRH 554
           +      +  R++   PR  M  H
Sbjct: 543 IATPTKDAVLRLSESPPRWCMAAH 566


>gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1]
          Length = 645

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 192/684 (28%), Positives = 302/684 (44%), Gaps = 84/684 (12%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           A++ +   V+  D      +P +L + L D  V   A N+ FER++ ++ LGI  P K W
Sbjct: 3   AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS--IDSPPYDC-TRA 150
            CT  LA   G    L      +   E   K  EGK LI  F K        P++    A
Sbjct: 63  RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              + W  F +Y  RDVE    +  RL+  P+ D E D++ LDQ IND G  ID +    
Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
              L    + ++ E++  +T   + +      L  +L    G    D+   T+  ++  +
Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWLKER-GYPFSDLRSDTVNKVIREA 239

Query: 269 N---ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +   +   A  ++  RL S+ +++ K  T+ +A   DGR R +LQF GASRT RW+G   
Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299

Query: 326 QPQNLPRQERSEEILT-----------QTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           Q QNLPR  +  E +T           + + AL     + +P+     C+RS  I + G 
Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLY--VGEPMDALVGCIRSAFIPTPGH 357

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           K +VADL+ IE+ V+ W+    W +   A   D+Y +  A   + P ++ +K  R+  K 
Sbjct: 358 KFIVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEE-TKPHRSKAKP 416

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
             L  GY+ G           GL                 W  AE+  + M  +  E +V
Sbjct: 417 ATLGAGYRLGGGHMDENGKKTGL-----------------WGYAENMGVHMTQKEAEESV 459

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
                        +A+R     +++ W DL      V++       R+      L++   
Sbjct: 460 -------------QAFRDLCPEIVRAWYDLENAVFKVIR------TRQAVVWGCLIIEYT 500

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYL-----------------------NTATSQLMRER 591
           K  + I LPS R++ Y   +     +                         + ++  +  
Sbjct: 501 KPFLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIY 560

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           ++GGKL ENIVQA++RD+L EG+K A + G+ IV+ +HDEIV+E P+    +V  L S M
Sbjct: 561 SHGGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCM 620

Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675
                WA+GLPL A G+E   YRK
Sbjct: 621 AAELPWAEGLPLGAAGWEGYFYRK 644


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 208/664 (31%), Positives = 303/664 (45%), Gaps = 84/664 (12%)

Query: 33  CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-GID 87
            AYA  DE   LW    D  E    PS+             A NS FE  ++       +
Sbjct: 1   MAYAIGDEDPILWLPGDDLPEFVTNPSEF---------TIYAWNSFFEWCIWHHVQEWSN 51

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            P   W  T+ LA    +P +L     AL   +   K + GK LI R  K      P   
Sbjct: 52  APIFLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSK------PNRG 105

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            R       + F EYC++DV   R +  RL PLS  ER +W LDQTIN RG  ID   V 
Sbjct: 106 KRIQDADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVE 165

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
               +I Q  +KL++++ +LT   + +  Q   +  Y+    G  L+   +  L+++L  
Sbjct: 166 NALLIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLED 225

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
             +  +A+ LI  R     ++  K   L + V+ D R  G L ++GA+ TGRWSG  FQP
Sbjct: 226 ETLPPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQP 284

Query: 328 QNLPRQERSEEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADL 381
           QNLPR    +      I+     ++        DP+   S  +R  I A  GK+L+V D 
Sbjct: 285 QNLPRPSFKDT--DNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDY 342

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IEARVL W+AG++  +     G +IY  T ++ +  P +KV++EQR IGKV  LALGY
Sbjct: 343 SQIEARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGY 402

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
           QGGAK F+ MA   G+++                                          
Sbjct: 403 QGGAKAFQGMAEVYGVEIDT---------------------------------------D 423

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             + +K  WR  ++ +++ W  + +     V   G     +   +  +  R     +   
Sbjct: 424 LADEIKVDWRVANRKIVKFWWGVEKAALNAVTHPG-----KTFEIRAIKFRFTDNYLFCR 478

Query: 562 LPSSRRLVYSDVKGDCSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILC 611
           LPS R L Y   K                N+ T +  R+ TYGGKL ENI QA++RD++ 
Sbjct: 479 LPSGRLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMA 538

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
           E M      GY++VL+VHDE+++E  D  + SV     LM + P WAKGLP+ +EG+E  
Sbjct: 539 EAMLRVENAGYEVVLSVHDELIAEANDD-FGSVEEFEQLMCELPVWAKGLPVTSEGFECL 597

Query: 672 RYRK 675
           RYRK
Sbjct: 598 RYRK 601


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 174/589 (29%), Positives = 268/589 (45%), Gaps = 74/589 (12%)

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYC 163
           SL     AL+    + K   GK LI +FC  +  S           ++   +W  F +Y 
Sbjct: 2   SLDAVGAALDL--DVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYN 59

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           +RDVE    +  RL   P+ + E D + LDQ IND G  +D  L      L  Q R    
Sbjct: 60  QRDVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATL 119

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +LT   + +      L+ +L    G ++  +++  +++ L  +  T   K+++  R
Sbjct: 120 ARARELTG--LENPNSPIQLKEWL-TTHGCEMSSLAKADVEAALESA--TGKVKEVLELR 174

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              + S++ K   +     +DGR RG +QFYGA RTGR++G + Q QNLPR    +    
Sbjct: 175 GDLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQA 234

Query: 342 QTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           +T+      + +           S  +R+  I S G + +VAD + IEARV+AW+AGE  
Sbjct: 235 RTLTRQRNLDALELLYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETS 294

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            + AF +G+D+Y  T ++ F  P++K  ++ E R  GK+  LA GY G     K M    
Sbjct: 295 TLAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG--- 351

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                                A++  L     + +  AWRA + 
Sbjct: 352 -------------------------------------ALRMGLAEHELKPIVDAWRAANP 374

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574
            +++LW D+ +     +      + R+   +  L        + I LPS RRL Y   + 
Sbjct: 375 NIVRLWADVEQAALDAI------TTRQAVRLRNLRFTAESGILFITLPSGRRLAYVKPQL 428

Query: 575 GDCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
           G+  +  T+          +  R  TYGGKL ENIVQA++RD+L   M    + G+ IV+
Sbjct: 429 GENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVM 488

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDEIV + P+   F++   C LMT  P WA GLPL A+GYE   YRK
Sbjct: 489 HVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 173/598 (28%), Positives = 270/598 (45%), Gaps = 73/598 (12%)

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ-- 154
            V     GLP+SL     AL  ++   K  EGKALI  FC     +        N+ +  
Sbjct: 1   MVHGTLLGLPASLDMMSKALRLAQE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHA 58

Query: 155 --AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
              W  F EYC++DV   R + K++   P  + E+  W LDQ I D+G RID+DLV    
Sbjct: 59  SEKWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAI 118

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
               + +  L +    LT   + +      L+ +L    G  +  +++ ++  +L+  ++
Sbjct: 119 ACQERYQASLSKKAKGLTG--LENPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDL 175

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            +  ++++L R   S ++I K   +  A   DGR+RG LQF GA+RTGRW+G + Q QNL
Sbjct: 176 DEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNL 235

Query: 331 PRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
           PR    +  + +  + L  G+        ++   + S  +R+  IA +G    + D + I
Sbjct: 236 PRNYIKD--IAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAI 293

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           EARV+AW+AGE W++  F +   IY  + ++ F+ PI++V K  R  GKV ELALGY GG
Sbjct: 294 EARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGG 353

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 M                                         A++  L     +
Sbjct: 354 VNALIAMG----------------------------------------ALEMGLKENELQ 373

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +  AWR     +  LW+ + +     +      S R+      L        + I LPS
Sbjct: 374 GIVDAWRKASPAITSLWRGVEKHAKLAI------STRKSQKYKGLTFYYEAGILFIKLPS 427

Query: 565 SRRLVYSDVK-------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            R L Y   K           Y         ++ TYGGKL ENIVQAI+RD L   ++  
Sbjct: 428 GRNLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRI 487

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              G D V+ VHDE ++E  ++   SV  L +++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 488 EDTGIDTVMHVHDEAITEVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 145/477 (30%), Positives = 222/477 (46%), Gaps = 41/477 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ YAE     I L  YA D   V++ D  +   +P ++L
Sbjct: 1   MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98
             L D+TV   A N+ FER+   + L                       +    W C+ V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQ 154
            +   GLP SL+     LN      KM+EG+ LI  FC    ++            + + 
Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W  F  Y KRDVE    + +RL   P+ +   + + LDQ INDRG  IDL+L  +   +
Sbjct: 179 KWNQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            A+ R+ L   + + T   + +      +  +L    G+    + +  +K +L      +
Sbjct: 239 DAKSRESLMAALKEKTG--LENPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLK--TAQE 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++  R   + S++ K   +  AV  DGR RG  QFYGA+RTGR +G   Q QNLP+
Sbjct: 294 PLRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E +         + S  +R+  +   G K VV+D + IEARV
Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQG 443
           ++W+AGE WK  AFA G+DIY +T ++ F  P+ K  V+ E R  GK+ ELA   +G
Sbjct: 414 ISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACIAEG 470



 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 19/192 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A+   +       + ++WR+ +  ++  W  +       +++   +    +  V +    
Sbjct: 789 ALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFVCQ---- 844

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQ 603
                + I LPS R+L Y   +   +              T +  R  +YG K  ENIVQ
Sbjct: 845 --SGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQ 902

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663
             +RDILC  M+  T     IV  VHDE++ E       SV  +C  M++ P WA+GL L
Sbjct: 903 GTARDILCYAMQ--TLRCCAIVGHVHDELIIECSKE--VSVDAICEQMSRTPPWAEGLVL 958

Query: 664 KAEGYEAKRYRK 675
           +A+GYE   Y+K
Sbjct: 959 RADGYECAFYQK 970


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 202/505 (40%), Positives = 281/505 (55%), Gaps = 19/505 (3%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--ATSQLMRE 590
           G     R     +L +RR K  + I LPS R L Y   +   G  +Y+ T   + +  R 
Sbjct: 362 GIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERL 416

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
           +TYGGK+ ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L
Sbjct: 417 KTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKL 476

Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ N  WA  LPL A G+E  RYRK
Sbjct: 477 LSFNSDWAWDLPLSANGFETYRYRK 501


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 143/456 (31%), Positives = 227/456 (49%), Gaps = 21/456 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + G + YA+     + L  YA D  PVK+ D T+   +PS ++
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPP-YDCTR---ANHVQAWQLFGEYCKRDVEATRELF 174
                K+  GK L+  FC     +    + TR    +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQ--KITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++    P+   E + + +DQ INDRG RID  LV    +   +   +  +   +LT   +
Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G++   +++ ++  +L  +  T     ++  R   S S++ K 
Sbjct: 237 ANPNSPLQLKNWLH-QQGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR--- 349
             + +A+  DG + G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353

Query: 350 -GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G    VAD + +EARV+AW++GE+W+  AFA  EDI
Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413

Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQ 442
           Y  + ++ F  P+ K  ++ E R  GK+ ELALGY 
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 143/462 (30%), Positives = 225/462 (48%), Gaps = 33/462 (7%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168
                K+  GK L+  FC       P   T+AN              WQ F +Y +RDVE
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172

Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              E+ ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +
Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT   + +      L+ +L    GI    +S+ ++  +L  +  T     ++  R   S 
Sbjct: 233 LTG--LANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S++ K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +  
Sbjct: 288 SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347

Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                           + S  +R+  I S      VAD + +EARV+AW++ E W+ ++F
Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407

Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQ 442
           A  EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY 
Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 190/729 (26%), Positives = 306/729 (41%), Gaps = 96/729 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           ++ +D E+RS + LP  G+  Y+  E   I + +++++   V+ W+  +    P+++ + 
Sbjct: 4   EIRLDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEIRDG-KFPAEVREA 62

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D  V+  A N+ FER++ ++ L I+ P K W CT   A       +L+     L   +
Sbjct: 63  LEDPNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQ 122

Query: 121 HLTKMEEGKALIARFCKGS--IDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKRL 177
              K+  GK LI  F K        P+           W  F  Y ++DV A   + + L
Sbjct: 123 DKVKLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEWL 182

Query: 178 IPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            P    D E +L+ LDQ INDRG  +DLD       +  + + +L   +  +T   + + 
Sbjct: 183 APYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--LENP 240

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA----KDLILNRLASSGSAILK 291
                L+ ++    G    D+ + T+K +L+      +      +++  R+ S+ +++ K
Sbjct: 241 NSPQQLKPWV-KARGYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGK 299

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE----------ILT 341
                  V    RLR  LQF GA RT RW+G   Q  NL R  ++ E           +T
Sbjct: 300 YKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVT 359

Query: 342 QTIQA---LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
             I+A      G  + +P+   + CVRS I A  G + V  DL+ IE  V+AW+A     
Sbjct: 360 NAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPL 419

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           +  F  G   Y     + +     +V+ + R + K   L  GY+ G           GL 
Sbjct: 420 LNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL- 478

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                           W  AE+  + M  Q             A + VK  +R  +  V 
Sbjct: 479 ----------------WGYAENMGIDMSRQ------------EAHDSVK-MYREAYPEVP 509

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC- 577
           QLWKDL       ++       R V+             +  +LPS RR+ Y   + +  
Sbjct: 510 QLWKDLEAAIIRTIKTKAVTRVRYVS------FEIVGEFLVAILPSGRRMYYHRPRIEKK 563

Query: 578 ----------------------------SYL--NTATSQLMRERTYGGKLTENIVQAISR 607
                                       SY+  N    + +R+ ++GGK+TEN+VQAI+R
Sbjct: 564 KFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAR 623

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           +IL  G+ NA K G +IVL VHDEIV+          +  L   MT    W + +P+ A 
Sbjct: 624 EILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAA 683

Query: 667 GYEAKRYRK 675
           G+ A  YRK
Sbjct: 684 GWSAAFYRK 692


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 235/501 (46%), Gaps = 34/501 (6%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ Y+E     I L AY+ D  PV++ D      +P+++L
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L DETV+  A N+ FER+   + LG+D  +  + W CT V   T GLP SL      L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K+ EGK LI  FC     +  +        +H    W  F  Y  RDVE    
Sbjct: 121 GLNKQ--KLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ D     + LDQ INDRG  ID D V    +L    +  L++ + +LT  
Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      +R +L    G++   + +  +  +L       L K +++ R   + S++ 
Sbjct: 238 -LENPNSVLQMRGWLLD-HGLETESLGKKAVDELLEQPIDENL-KQVLVLRQQLAKSSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +     SD R RG  QFYGA+RTGR++G     QNLP+   S+    +++   +  
Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNF 354

Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E +     +   + S+ +R+  +   G K +V+D + IEARV+AW++GE W+ + F NG 
Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414

Query: 407 DIYVTTYAKAFNTPIDKV-------------SKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           DIY  + ++ F  P++K              SK +    +++ +A+G   G     +   
Sbjct: 415 DIYCASASQMFGVPVEKHGVNGLTGRLEELDSKLKELESEIISMAIG-GQGYDELASQIF 473

Query: 454 HCGLDLQQFSQNVKSTSTFED 474
               +    ++ + + +  + 
Sbjct: 474 SLRDERDAVAKQIAANTNLQQ 494


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/449 (39%), Positives = 254/449 (56%), Gaps = 13/449 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  R  +S ++  K   L + V
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF       G D+Y  
Sbjct: 365 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 424

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            YAKA+   +++V+K+QR IGKV+ELA  
Sbjct: 425 AYAKAYGIEVERVTKDQRQIGKVLELACI 453



 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 11/246 (4%)

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +    GY GG   F T A    LDL + +         +   +A+S +     +   + +
Sbjct: 735 IVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGL 794

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            +++   AC+ +K+ WR  H      W +L       +      + ++      L +RR 
Sbjct: 795 SERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTAI-----ATPQKTLYCGYLKIRRD 848

Query: 555 KRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDI 609
              + I LPS R + Y      KG+ +Y+  N+ + +  R +TYGGKL EN+ QA +RD+
Sbjct: 849 GAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDV 908

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYE 669
           L   M      GY IVLTVHDEI+SE PD+P +S   +  L+   P WA  +PL A G+E
Sbjct: 909 LAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFE 968

Query: 670 AKRYRK 675
           + RYRK
Sbjct: 969 SYRYRK 974


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 143/522 (27%), Positives = 225/522 (43%), Gaps = 70/522 (13%)

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +LT
Sbjct: 1   MEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT 60

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      L+ +L    G     +S+ ++  +L  +  T     ++  R   S S+
Sbjct: 61  G--LANPNSPLQLKDWL-QQQGAKTDSLSKASVAQLLQTT--TGKVHQILALRQLLSKSS 115

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +    
Sbjct: 116 VKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQG 175

Query: 349 RGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
               +A        + S  +R+  I S      VAD + +EARV+AW++ E+W+ +AFA 
Sbjct: 176 NVTALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEAFAK 235

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            EDIY  + ++ F  P+ K  ++ E R  GK+ ELALGY G     K M           
Sbjct: 236 NEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG---------- 285

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A K  L       + + WR     ++Q W 
Sbjct: 286 ------------------------------ATKLVLTDDELPPLVQMWRNASPHIVQFWW 315

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+ +     ++     +         +        + + L S R L Y   K   +   +
Sbjct: 316 DVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPKPKIGTNRFGS 369

Query: 583 AT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
            +          +  R  TYG KL ENIVQA SRD+L E M+        +V+ +HDE V
Sbjct: 370 ESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAV 429

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P     S+ T+  LMT+ P WA GL L A G+ +  Y+K
Sbjct: 430 IDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469


>gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
          Length = 567

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/571 (36%), Positives = 285/571 (49%), Gaps = 58/571 (10%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAFA----------------------------------------NGEDIYV 410
           W+AGE  K+ AF                                          G+DIY 
Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             YA +F      V+K+QR IGKV ELALGY GG   F   A+   +DL+  ++   +  
Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALP 361

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                E  E+      +Q P F + D+    AC++ K+AWR  H  +   WK L      
Sbjct: 362 PLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATD 420

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--T 584
            ++   +           + M+  +  + + LPS R L Y+  +    G  SY+ T   T
Sbjct: 421 AIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+ 
Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNA 535

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 567

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/571 (36%), Positives = 285/571 (49%), Gaps = 58/571 (10%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAFA----------------------------------------NGEDIYV 410
           W+AGE  K+ AF                                          G+DIY 
Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             YA +F      V+K+QR IGKV ELALGY GG   F   A+   +DL+  ++   +  
Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALP 361

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                E  E+      +Q P F + D+    AC++ K+AWR  H  +   WK L      
Sbjct: 362 PLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATD 420

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--T 584
            ++   +           + M+  +  + + LPS R L Y+  +    G  SY+ T   T
Sbjct: 421 AIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE+++E  D   F+ 
Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 567

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 208/571 (36%), Positives = 284/571 (49%), Gaps = 58/571 (10%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAF----------------------------------------ANGEDIYV 410
           W+AGE  K+ AF                                          G+DIY 
Sbjct: 243 WLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             YA +F      V+KEQR IGKV ELALGY GG   F   A+   +DL+  ++   +  
Sbjct: 303 RAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALP 361

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                E  E+      +Q P F + D+    AC++ K+AWR  H  +   W+ L      
Sbjct: 362 PLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAATD 420

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--AT 584
            +    +           + ++  +  + + LPS R L Y+  +    G  SY+ T   T
Sbjct: 421 AIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPIT 475

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE+++E  D   F+ 
Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/405 (31%), Positives = 208/405 (51%), Gaps = 19/405 (4%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S   L K GV+AYA+     I L AY++DDE  K+ D  +   +  ++  
Sbjct: 7   KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D  ++  A N+ FER    K +G+ +  + W+CT+V +    LP SL+     L  S
Sbjct: 67  ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126

Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175
           E   K++EGK LI  F   CK +  +         H  + W+ F  YC RDV+  + + +
Sbjct: 127 EQ--KLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQ 184

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +L   P+ + E   + LDQ INDRG  +D +LV +        +  +     ++T   + 
Sbjct: 185 KLHKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTG--LE 242

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L+ +L    G+++  +S+G +  ++  ++   L  + +  RL  + +++ K  
Sbjct: 243 NPNSVSQLKGWLSER-GVEIDSLSKGAVAELIEDADGEVL--EALKLRLLMAKTSVKKYE 299

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351
            +  +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+   S+  L +++    + E  
Sbjct: 300 AIERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEEL 359

Query: 352 --TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                    + S+ +R+  I   G + +VAD + IEARVLAW++G
Sbjct: 360 ELFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/708 (25%), Positives = 286/708 (40%), Gaps = 90/708 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60
             LF+D ET S   L + G+  Y          + +    +   D  E    +P  + ++
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEVGQRVPEVITRH 63

Query: 61  LRDETVMCVAHNSLFERI----LFKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNA 112
           +R    + VAHN+ F+      + ++  G     +    +  C++  AR NGLP SL  A
Sbjct: 64  VRAGH-LFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 122

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C AL       K  EG    A++ K    +P  D T A+H + +    +Y   D +A   
Sbjct: 123 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVG 174

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG +
Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +  +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +     
Sbjct: 235 LAVSEVEKIKTYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCV-----FQPQNLPRQERSEEILTQTI 344
             L   V   GRL+ +  ++GA     T R +G        +P+   +    E IL   +
Sbjct: 294 AILRAHVG--GRLQHSTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDACL 351

Query: 345 QALNRGET---IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      +   +   L   +D  R    A   G  LV ADL+GIEAR   WIAG+   ++
Sbjct: 352 RHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELLE 411

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL- 459
           AF  G D Y    A  F    + V+K+QR IGKV  LAL Y GGA  F +MA++ G+ L 
Sbjct: 412 AFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHLP 471

Query: 460 -QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            +Q  + V     +   FE W     + + M    P   +   +    C  V        
Sbjct: 472 PEQVDEIVLNWRAARPAFERWWSLCEYSVLMALDQPNREITMPIGRDFCSHV-------- 523

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                                                    R + + LPS R + Y + +
Sbjct: 524 -----------------------------------TFVHDGRALRMQLPSGRAISYHNAR 548

Query: 575 GDCSYL-NTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
                  N   +   +   Y        L+ N+ Q ++RD+    + +  +    IV  V
Sbjct: 549 LHLEPGANVPIAIYDKPEGYIETLDRKILSNNMTQGLARDLFWSVLLDVDRV-EQIVHHV 607

Query: 629 HDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +DE + E  +         L   M +  +W  GLPL AEG+   R+RK
Sbjct: 608 YDEALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 176/704 (25%), Positives = 287/704 (40%), Gaps = 86/704 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           LF+D E  S   L + G+  Y +        + +    +   D  E  + +P  ++ +L 
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWEYGNVVPKQIVMHLT 65

Query: 63  DETVMCVAHNSLFERIL----FKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNACL 114
               + VAHN+ F+  +     ++  G     +    +  C++  AR NGLP SL  AC 
Sbjct: 66  SGG-LFVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 124

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL       K  EG    A++ K    +P  D T  +H + +    +Y   D +A   ++
Sbjct: 125 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG I +
Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +       
Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 295

Query: 295 LSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNR 349
           L   V   GRL+    ++GA     T R +G   Q  N   PR  +        + A  R
Sbjct: 296 LRAHVG--GRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACLR 352

Query: 350 GET-------IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           G+        +   L   +D  R    A   G  LV ADL+GIEAR+  W+A +  K++A
Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G D Y       ++   D V+K+QR +GK  +LALG+ G    F +MA++ G+ L  
Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHL-- 470

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                       P   V +         +   WRA      + W
Sbjct: 471 ----------------------------PPEQVSE---------IVYNWRAGRPA-FERW 492

Query: 522 KDLTE--GFACVVQEGGSISAR-RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             L E      + Q G  I       N  ++   +  R + + LPS R + Y + +    
Sbjct: 493 WSLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLE 552

Query: 579 YL-NTATSQLMRERTYGGKL-----TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
              N   +   +   Y   L     + N  Q +SRD+    + +  +   +IV  ++DE 
Sbjct: 553 PGANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRV-EEIVHHIYDEA 611

Query: 633 VSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 612 LLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655


>gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
 gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
          Length = 838

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 201/807 (24%), Positives = 320/807 (39%), Gaps = 146/807 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDE-PVKLWDRTE------QSAMPSD 56
           ID ETRSP  + K G + Y+          AY    E  VKLW          +S  P+D
Sbjct: 41  IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPTD 100

Query: 57  LLQYLRDETVMCVAHNSLFER-----ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
           L  ++     +  AHN+ FER     I+  +     I   +W C++  A    LP SL+ 
Sbjct: 101 LFAFILAGG-LVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLEE 159

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKG------SIDSPPYDCTRANHVQAWQLFG----- 160
           A  A++    + K  EG+ L+ + CK        ++   +D        A++  G     
Sbjct: 160 AVAAMDLG--IDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVY 217

Query: 161 -----------EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
                      +YCK+DV A   L   L  LS+ E + W +DQ +N RG R DL +  + 
Sbjct: 218 HETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQA 277

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
             + ++ RK+L+  +  LT   I S+ +  A++ +L     +DL D +  TLK  L +  
Sbjct: 278 LSMASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLENEE 335

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           ++  A+ ++      + ++  K N + + A   D R R  + ++GA  TGRW+G   Q  
Sbjct: 336 LSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQVH 394

Query: 329 NLPRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLA 382
           N P ++   +   +  + +  G+         D +   S  +R  I+A  G++L+VAD A
Sbjct: 395 NFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYA 454

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN------------TPIDKVSKEQRA 430
            IEAR + W A +   +  F  G+DIY       +              P   +    R 
Sbjct: 455 AIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQ 514

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQF-------------------SQNVKSTST 471
            GK   L LGY  G   F       G+   +                     Q    T  
Sbjct: 515 FGKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTPP 574

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA------------WRAKHQGVLQ 519
            +   +    +   + Q      + +LI    +  K              +RA++  V  
Sbjct: 575 SKMTPEEAKRYSARKRQAARS--RRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKA 632

Query: 520 LWKDLTEGFACVVQEGGSIS-----ARRVANVPRLVMR---------------------- 552
           +W D        V+   +             +PR V                        
Sbjct: 633 MWSDQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVD 692

Query: 553 --------RHKRDVHIVLPSSRRLVYSDV------------KGDCSYL--NTATSQLMRE 590
                   +  + +H  LPS RR+ Y D             K    Y+  +  T + +R 
Sbjct: 693 ALAGTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRT 752

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC 648
            TYGGK+ ENI QA++RDI+ E M N+ K G  YD +++VHDE+V E  +     +    
Sbjct: 753 ATYGGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDEDK-GDLEEFE 811

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +LM+  P WA G P+ AE    KRYRK
Sbjct: 812 TLMSDLPIWAAGCPIVAEAERFKRYRK 838


>gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3]
 gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3]
 gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5]
 gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12]
          Length = 1032

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/451 (35%), Positives = 235/451 (52%), Gaps = 19/451 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R++ K   G ++  +  I T ++A  + LP SL + 
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T A H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  +   
Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        L+    L     + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K   L    SSD R RG LQ+ GA RT RW+G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357

Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G+K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVM 435
           IY  T  K F    D + KE+   R IGK  
Sbjct: 418 IYCVTAGKMFGMDPDDIKKERKDLRQIGKAC 448



 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 123/286 (43%), Gaps = 45/286 (15%)

Query: 435  MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA- 493
             EL LGY+GG   F T A + GLDL + ++ +  T     W      + W + Q  +   
Sbjct: 747  CELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPP 806

Query: 494  -----------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA-- 540
                       + DK +   C+ +K+ WR  H   +  W+DL +G    V+  G      
Sbjct: 807  HPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 866

Query: 541  -------RRVANVPRLVMRRHKR------DVHIVLPSSRRLVYS---------------- 571
                    R   + R V             + + LPS R L Y                 
Sbjct: 867  AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 926

Query: 572  --DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +V+      N  T Q     T+GGK  ENIVQA+ RD+L   M N    GY IVL+VH
Sbjct: 927  NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 986

Query: 630  DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            DE+V ETPDTP ++V  L  LM   P WA G PL AEG E KRY K
Sbjct: 987  DELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/709 (23%), Positives = 291/709 (41%), Gaps = 119/709 (16%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-----GIDIPSKRWICTSVLARTNG 104
               P+DL+ ++ +   +  A N  FE  ++   L        +  ++  C    AR   
Sbjct: 13  GGPKPTDLIDHIANGGPI-AAWNITFEFWIWNMVLAKSEGWPWLQLEQCYCDMAKARRFS 71

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANHVQAWQLFGE 161
           LP SL  A  AL  +E   K ++GK LI + C+    +   P    T     Q +     
Sbjct: 72  LPGSLDTAAKALRTAE---KDKKGKQLIGKLCRPVSATKARPEPRWTLYTAPQDYADLYR 128

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           YC +DV++   +   +  ++  ER+ WL DQ IN RG  +D++ +    +++ Q  ++  
Sbjct: 129 YCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALDIVGQTTRRFT 188

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            ++  +T+G + S  +   L  +L  + G  + ++   T+   L   ++   A+ ++  R
Sbjct: 189 MELAAITNGAVGSVSEVAKLTDFLATV-GCRMHNLKSETVAETLERDDLNPTARRILEIR 247

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            A +G+ + KL +L   +SSDGRLR    F+GA  TGRWS    Q QNL  +    +   
Sbjct: 248 EALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLTSKGPKSKTCN 306

Query: 342 QTIQALNRGETI-----------------------------------------------A 354
              + + +   +                                                
Sbjct: 307 GCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKHRNLDLIIDIWG 366

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
           DP+ L S C+R   IA+ GKK V  D + IEA VLA +A  +W+I+ F     IY  + +
Sbjct: 367 DPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTHGKIYEMSAS 426

Query: 415 KAFNTPIDKV----------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           K    P +++             ++++GKV ELA GY G    +K   +           
Sbjct: 427 KISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGAE---------- 476

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                  FED +  +   L  +D  PE              + + W  +++      K +
Sbjct: 477 -----EHFEDDDAMKKAILGWRDASPE--------------IVEFWGGQYRRDPYTRKWV 517

Query: 525 TEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-------- 575
            E +        +I +  +   V  +        ++  LPS R L Y   K         
Sbjct: 518 REYYGLEGAVIMAILNPGKCYAVGDITYAVFDDVLYCRLPSGRFLQYHQPKLIESDSWKG 577

Query: 576 ---DCSYLNTATS------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                +++   T+        +R  TYGG+L EN+ QA + D+    MK    NGY +V+
Sbjct: 578 PEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQAYAMKQCENNGYPVVM 637

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             HDE+++E P   + SV  + +LMT    W +  P++A G+E  RY+K
Sbjct: 638 HTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIRAAGWEDDRYQK 685


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 179/709 (25%), Positives = 287/709 (40%), Gaps = 93/709 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60
             LF+D ET S   L + G+  Y +        + +    +   D  E    +P  ++ +
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEVGQPVPKQIIGH 63

Query: 61  LRDETVMCVAHNSLFERI----LFKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNA 112
           L       VAHN+ F+      + ++  G     +    +  C++  AR NGLP SL  A
Sbjct: 64  LNGSP--FVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C AL       K  EG    A++ K    +P  D T A+H + +    +Y   D +A   
Sbjct: 122 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFTRTYKYALIDTDAMVG 173

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG I
Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +  +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +     
Sbjct: 234 LAVTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292

Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQAL 347
             L   V   GRL+    ++GA     T R +G   Q  N   PR  +        + A 
Sbjct: 293 AILRAHVG--GRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDAC 349

Query: 348 NRGET-------IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            RG+        +   L   +D  R    A   G  LV ADL+GIEAR+  W+A +  K+
Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G D Y       ++   D V+K+QR +GKV +LALG+ GG   F +MA++ G+ L
Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469

Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             +Q S+ V         FE W     + + M    P   V   +    C  +       
Sbjct: 470 PPEQVSEIVYNWRAGRPAFERWWSLCEYSVLMALDQPGREVVMPVGRDFCSQI------- 522

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                                                  R  R + + LPS R + Y + 
Sbjct: 523 ------------------------------------TFVRDARALRMHLPSGRAISYHNA 546

Query: 574 KGDCSYL-NTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +       N   +   +   Y        L+ N  Q ++RD+    + +  +   +IV  
Sbjct: 547 RLHLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHH 605

Query: 628 VHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+DE + E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 606 VYDEALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e]
 gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e]
          Length = 461

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/451 (34%), Positives = 232/451 (51%), Gaps = 19/451 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T   H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  +   
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        L+    L     + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K   L    SSD R RG LQ+ GA RT RW+G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357

Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G+K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVM 435
           IY  T  K F    D + KE+   R IGK  
Sbjct: 418 IYCVTAGKMFGMDPDDIKKERKDLRQIGKAC 448


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/703 (24%), Positives = 283/703 (40%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           LF+D E  S   L + G+  Y +        + +    +   D  E    +P  ++ +L 
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEVGQPVPKQIVGHLN 65

Query: 63  DETVMCVAHNSLFERI----LFKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNACL 114
                 VAHN+ F+      + ++  G     +    +  C++  AR NGLP SL  AC 
Sbjct: 66  GSP--FVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL       K  EG    A++ K    +P  D T A+H + +    +Y   D +A   ++
Sbjct: 124 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVGVW 175

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +  +PL    +  + +D  IN RG   D++    +++L A    +LD ++  LTDG I +
Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +       
Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 294

Query: 295 LSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNR 349
           L   V   GRL+    ++GA     T R +G   Q  N   PR  +        + A  R
Sbjct: 295 LRAHVG--GRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACLR 351

Query: 350 GET-------IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           G+        +   L   +D  R    A   G  LV ADL+GIEARV  W+A +  K++A
Sbjct: 352 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEA 411

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G D Y       ++   D V+K+QR +GK  +LALG+ GG   F +MA++ G+ L  
Sbjct: 412 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHL-- 469

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                       P   V +         +   WRA      + W
Sbjct: 470 ----------------------------PPEQVSE---------IVYNWRAGRPAFERWW 492

Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                     + + G   +      N  ++   +  R + + LPS R + Y + +     
Sbjct: 493 SLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 552

Query: 580 L-NTATSQLMRERTYGGKL-----TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
             N   +   +   Y   L     + N  Q ++RD+    + +  +   +IV  V+DE +
Sbjct: 553 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHHVYDEAL 611

Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 612 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2]
 gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2]
          Length = 658

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/705 (22%), Positives = 283/705 (40%), Gaps = 87/705 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQY 60
           LF+D E  S   L   G+  Y          + +         LW+      +P  +L +
Sbjct: 8   LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWEL--GQPIPRQILAH 65

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSK--------RWICTSVLARTNGLPSSLKNA 112
           +       VAHN+ F+ +++   L   + +         +  C++  AR NGLP  L  A
Sbjct: 66  IAAGK-TFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRA 124

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             AL     L K  EG A +             + T A H + +    +Y   D +    
Sbjct: 125 AEALGLP--LQKDREGAAAMKELMHNP------EWTPATHPELFARTYKYALLDTDVMVA 176

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L++   P+   E+  W LD  IN RG+ +D++    + E+    +  +D ++   T G I
Sbjct: 177 LWEATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKI 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            ++     ++ +     G +L +    ++K++L+  ++ ++ +D++  RL +S +     
Sbjct: 237 LTTSVIKQIQSFAAG-LGAELDEAGRESVKALLTRDDVPEVLRDVLTLRLDASRAPKKHD 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGA--SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALN 348
             L   V+  GR+  +  ++GA   R+        Q  N+  PR  R  +     + A  
Sbjct: 296 AILRAHVN--GRMCHSTVYHGALSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYLDAAR 353

Query: 349 RGET-------IADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           R +        +  PL   +D  R    A+  G  LVVADL+GIEAR   W+A ++  + 
Sbjct: 354 RRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLV 413

Query: 401 AFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            +  G D Y    A  F+ P  D V+ +QR IGK+  LAL + GG      MA   GL+L
Sbjct: 414 EYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLEL 473

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +                                ++ K++ +        +R  H  +  
Sbjct: 474 SE-------------------------------DLRRKIVWS--------YRESHPALST 494

Query: 520 LWKDLTEGFACVV-QEGGSISARRVANVP-RLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            W  L       + Q G ++       +       R    + + LPS R + Y + +   
Sbjct: 495 WWASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVL 554

Query: 578 SYLNTA-TSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
               +A  +   +            L+ N+ Q ++RD+  E M +       IV  V+DE
Sbjct: 555 EPGASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPV-EQIVHHVYDE 613

Query: 632 IVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ E P+      +  L + ++K P WA GLPL AEG+ +  +RK
Sbjct: 614 VILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/539 (29%), Positives = 246/539 (45%), Gaps = 43/539 (7%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++ RL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+++  RL +S ++  K   L + V
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKEMLAIRLQASTTSTSKYKALMKGV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+A N        L +
Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQI 364

Query: 360 ASDCVRSCIIAS----NGKKLVVADLAGIEARVLAWIAGEDW------KIKAFANGEDIY 409
           AS  V +    S    +  KL   D    EA     +    W       +KAF  G  + 
Sbjct: 365 ASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL- 423

Query: 410 VTTYAKAFNTPIDKVSKEQR--AIGKVMEL-------ALGYQGGAKVFKTMASHCGLDLQ 460
                       D+  +  R    GK+  L         G       +  +      DL+
Sbjct: 424 ------------DQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFSHWWDLE 471

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYP-----EFAVKDKL-IGTACELVKKAWRAK 513
           Q+ Q ++        +   +  +++          E  ++ +    T  +++  A + +
Sbjct: 472 QYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQDILLDAMKKR 530


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/378 (37%), Positives = 203/378 (53%), Gaps = 8/378 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  +GLP SL   C  L   +  
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    G++L DM   TL+  ++  ++    K+L+  R  +S ++  K   L + V
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       + 
Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364

Query: 357 LGLASDCVRSCIIASNGK 374
           + L S  +R CIIA  GK
Sbjct: 365 MELTSSALRGCIIAPTGK 382


>gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1]
 gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1]
          Length = 1062

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/470 (34%), Positives = 230/470 (48%), Gaps = 38/470 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
             +LF+D ET S   L KVG +AYAE     I +C YA D+  V+ WD TE   MP +L 
Sbjct: 4   FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELR 63

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + LR     +  + +A+  LF+R++ ++  GID+P  +   T ++A  + LP SL   C 
Sbjct: 64  KALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQ 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATREL 173
            L       K + GKALI RFCK +  +      TR  H + W  F  Y   D+ A RE+
Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREV 183

Query: 174 FKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           + R+     +  E ++ L+DQ INDRG+ +D+DL     + +   +++L E+  +   G 
Sbjct: 184 YWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFGGK 243

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           +  +     LR          + +  + TL  +L   +     K LI  RL +S +A  K
Sbjct: 244 LTGNDFLPILRDI---APAFTIHNAQKSTLNDLLEDPDFPDEGKALIEMRLGASSTASTK 300

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI------------ 339
            N L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R E S++             
Sbjct: 301 YNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESD 360

Query: 340 ---------LTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
                    LT  I +L RG      D   L +  VR CII + GKK VVAD + +E R 
Sbjct: 361 VSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRG 420

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKVM 435
           LAW+AGE   +  F  G DIY  T  K F    D +    K+ R IGK  
Sbjct: 421 LAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKAC 470



 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/294 (30%), Positives = 125/294 (42%), Gaps = 53/294 (18%)

Query: 435  MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ----DQYP 490
             EL LGY GG   F   A + GLDL   +  +K T     W  A+  + + +     + P
Sbjct: 769  CELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAKRPP 828

Query: 491  EFAVKD--------KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA-- 540
            +   KD        K +   C+ +K+ WR  H   +  W +L +   C ++  G      
Sbjct: 829  KPGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAYWAG 888

Query: 541  -------RRVANVPRLVMRRH-------------KRDVHIVLPSSRRLVYSDV------- 573
                   R+   + R   +                  + I LPS R + Y  +       
Sbjct: 889  ANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTE 948

Query: 574  ------------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                        +      N  T Q   + TYGGKLTENIVQA+ RDIL   M      G
Sbjct: 949  IDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAG 1008

Query: 622  YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            Y+IVL+VHDE+++E PDT  ++   LC+LM   P WAKG PL AEG    RYRK
Sbjct: 1009 YEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/328 (32%), Positives = 169/328 (51%), Gaps = 15/328 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M KL ID+ET S   L K GV+ YAE     I L AY+ DD  VK+ D +    +P ++L
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+++   A N+ FER+   + LG  +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   KM EGKALI  F   CK +  +        +H ++ W  F EY +RDVE   E+ 
Sbjct: 121 DKQ--KMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+   E + + +DQ INDRG  ID  LV    +     R++  +  ++LT   +
Sbjct: 179 KKLSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +++  ++S L   N     K+++  R   S S++ K 
Sbjct: 237 ENPNSPMQLKEWLNEK-GLEIDSLAKKDVESALK--NAEGDIKEVLELRQELSKSSVRKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           + +     +D R+RG LQFYGA+RTGR+
Sbjct: 294 DAMKNVKGNDKRVRGLLQFYGANRTGRY 321



 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 176/385 (45%), Gaps = 69/385 (17%)

Query: 311 FYGASRTGRW-----SGCVFQPQNLPRQERSEEILTQTIQALNRGETI----ADPLGLAS 361
           F+   R GR      SG + Q QNL R    +  L +++      E++      P  + S
Sbjct: 616 FFLVRRNGRVWVTGNSGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLS 675

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R+  I   G + +V+D + IEARVLAW+AGEDW + AF NGEDIY +T ++ F  P+
Sbjct: 676 QLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPV 735

Query: 422 DK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
            K  V+ + R  GKV  LA GY G     K M                            
Sbjct: 736 VKHGVNGDLRQKGKVATLACGYGGSVGALKAMG--------------------------- 768

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                        A++  L     + +  +WR  +  ++ LW D+      VV+      
Sbjct: 769 -------------AIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVK------ 809

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---------SQLMRE 590
            R       LV+   K  + I LPS RRL Y   K   +     +         ++  + 
Sbjct: 810 TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKI 869

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            +YGGK  ENIVQAI+RDIL E M    K G++IV+ +HDE+V E   +   S+  +  +
Sbjct: 870 ESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSSIEEINEI 926

Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675
           M+  PSWA GL L A+G+E++ Y+K
Sbjct: 927 MSLVPSWAPGLILDADGFESEFYKK 951


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/402 (28%), Positives = 172/402 (42%), Gaps = 65/402 (16%)

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             K   +  A  +D R RG  QFYGA+RTGRW+G + Q QNLP+    +    + +  + 
Sbjct: 4   KQKYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIG 63

Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             +++     D     S  +R+  IA  G K  VAD + IEARV+A +AGE W+   F N
Sbjct: 64  DYDSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKN 123

Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F+  ++K  ++   R  GK+ ELALGY G     K M           
Sbjct: 124 GGDIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 173

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L     + +  AWR  +  ++ LW 
Sbjct: 174 ------------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWW 203

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D        ++   S ++  +              + I LPS R+L Y   +   +    
Sbjct: 204 DFDTAIKNAIKMHCSTASHGIK------FTWRSGMLLITLPSGRKLTYVKPRIGENKFGG 257

Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R   YG K  EN+VQAISRD+L   MK  T +   I   VHDE++
Sbjct: 258 ESVTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMK--TLSHCFICGHVHDELI 315

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E  +    S+  LC  M + P W   + L+A+GY  + Y+K
Sbjct: 316 IECSE--KVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 131/350 (37%), Positives = 195/350 (55%), Gaps = 5/350 (1%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L+ D+ET    P+   G  AYAE   + L A+A  DEPV +WD T    +PS L + + D
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              +   HNS F+R + +  +    P  +RW  T V A  + LP +L   C  L   +  
Sbjct: 65  PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            K +EGK+LI  FCK    +S     T   H   WQ F  Y   D+EA RE++KRL   +
Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  LW  DQ INDRG+ +D+DLV      + + +K+L E  V++T+G ++++ Q  
Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           A+  ++    G++L DM + T++  ++  ++    K+L+  RL +S ++  K  TL ++V
Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIADPDLPPAVKELLHIRLQASATSTSKYKTLLKSV 304

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           SSDGRLRGTLQF GASRTGRW+G +FQPQNL R+  S E +   I+ +  
Sbjct: 305 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKA 354


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 154/418 (36%), Positives = 223/418 (53%), Gaps = 16/418 (3%)

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           D+ ATRE+++ L    ++  E  LW LDQ IN RG  +D++L       +  E+K+L   
Sbjct: 3   DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L+  RL 
Sbjct: 63  TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRINDPDIPPALRELLSIRLQ 122

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S  ++  K   L +++S+DGRLRGT QF GASRTGRW+G +FQP NLPR       +   
Sbjct: 123 SCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDNG 182

Query: 344 IQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           I+AL  G       D + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ 
Sbjct: 183 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 242

Query: 401 AFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           AF+      G+D+Y   YA+AFN   + V+K QR IGKVMEL LGY GG   F T A   
Sbjct: 243 AFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALAY 302

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            LDL + +             +A S +    +    + +  K+  T C+ +K+ WR  H 
Sbjct: 303 SLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAHT 361

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
             +  W D+ +     +Q  G     R     +L +RR K  + I LPS R L Y   
Sbjct: 362 QTVSFWYDIEDAVKQAIQSPGVAFKCR-----KLSVRRDKSWLRICLPSGRSLCYPSA 414


>gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 368

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 122/415 (29%), Positives = 182/415 (43%), Gaps = 66/415 (15%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
             RL  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+ 
Sbjct: 1   EIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDT 59

Query: 339 ILTQTIQALNRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            L      +               P  L S  VR+   A  G +L V+D + IEARV+AW
Sbjct: 60  ELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAW 119

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFK 449
            A E W++  F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K
Sbjct: 120 YAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALK 179

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            M                                         A++  +     + +  +
Sbjct: 180 AMG----------------------------------------ALEMGIEENELQGLVDS 199

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  +  ++  WK   E          ++ +R+  +   L     K  + I LPS R L 
Sbjct: 200 WRNANPNIVNFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALA 253

Query: 570 YSDV-KGDCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
           Y     G+ S+ +            +  + +TYGGKL ENIVQA +RD+L   +      
Sbjct: 254 YPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAL 313

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 314 GFKIVGHVHDEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 118/400 (29%), Positives = 178/400 (44%), Gaps = 63/400 (15%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
           M++ ++   L  +  +   K+ +  R   S S++ K   + +   +D R  G LQFYGA+
Sbjct: 1   MAKESVDDALVSA--SGEVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGAN 58

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL----GLASDCVRSCIIAS 371
           RTGRW+G + Q QNLPR    +    +++     GET+           S  +R+  I S
Sbjct: 59  RTGRWAGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPS 118

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQR 429
            G + +VAD + IEARVLAW+AGE+  + AF NGED+Y  T +  F  P++K  V+ E R
Sbjct: 119 KGHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELR 178

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
             GK+  LA GY G     K M                                      
Sbjct: 179 QKGKIAVLACGYNGSVGALKAMG------------------------------------- 201

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+K  L     + +  AWRA +  ++QLW D+       +  G  ++      +  L
Sbjct: 202 ---ALKMGLSEDELQPIVDAWRAANPNIVQLWHDVDNAATRAISTGRPVT------LGNL 252

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---------SQLMRERTYGGKLTEN 600
              +    + I LPS RRL Y       +     +          +  +  TYGGKL EN
Sbjct: 253 GFEKKSGMLFINLPSGRRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVEN 312

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
           IVQA +RD+L E +      G+ IV+ +HDE+V + P   
Sbjct: 313 IVQATARDLLVEAITRIENAGHRIVMHIHDEVVIDEPINS 352


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 147/393 (37%), Positives = 211/393 (53%), Gaps = 19/393 (4%)

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L     +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L+
Sbjct: 3   RLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELL 62

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
             RL S  ++  K   L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR      
Sbjct: 63  SVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPN 122

Query: 339 ILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
            +   I+AL  G       D + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE
Sbjct: 123 TIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGE 182

Query: 396 DWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           +WK+ AF+      G+D+Y   YA+AFN   + V+KEQR IGKVMEL LGY GG   F T
Sbjct: 183 NWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLT 242

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            A   GLDL + ++            +A   +    +    + + +K+  T C+ +K+ W
Sbjct: 243 FALAYGLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMW 301

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  H   +  W D+ +     +Q  G     R     +L +RR K  + I LPS R L Y
Sbjct: 302 RNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCY 356

Query: 571 SDVK---GDCSYLNT--ATSQLMRERTYGGKLT 598
              +   G  +Y+ T   + +  R +TYGGKL 
Sbjct: 357 PSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/394 (37%), Positives = 213/394 (54%), Gaps = 19/394 (4%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+L     +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L
Sbjct: 2   KRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLREL 61

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +  RL S  ++  K   L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR     
Sbjct: 62  LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 121

Query: 338 EILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
             +   I+AL  G       D + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AG
Sbjct: 122 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 181

Query: 395 EDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           E+WK+KAF+      G+D+Y   YA+AFN   + V+K+QR IGKVMEL LGY GG   F 
Sbjct: 182 ENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFL 241

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           T A   GLDL + ++            +A S +    +    + + +K+    C+ +K+ 
Sbjct: 242 TFALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRM 300

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  H   +  W D+ +     +Q  G     R     +L +RR K  + I LPS R L 
Sbjct: 301 WRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLC 355

Query: 570 YSDVK---GDCSYLNT--ATSQLMRERTYGGKLT 598
           Y   +   G  +Y+ T   + +  R +TYGGKL 
Sbjct: 356 YPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46]
          Length = 330

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 105/337 (31%), Positives = 157/337 (46%), Gaps = 20/337 (5%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56
           + IDIE  S   + K G + Y  AE   I + AY+ D  PV   D T+    P       
Sbjct: 1   MNIDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYET 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L
Sbjct: 61  FKIALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K + GK LI  F   CK +  +         H  + WQ F +YC RDVE    
Sbjct: 121 RL--QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q + +L +   ++TD 
Sbjct: 179 IANKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD- 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G+D+ ++ + T++  L  +  T  AK ++  RL  S +++ 
Sbjct: 238 -LENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKTSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           K N + + + SD R+RG  QFYGA  TGRW+G   Q 
Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQL 330


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 141/367 (38%), Positives = 204/367 (55%), Gaps = 9/367 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A S +    ++   + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 GSISARR 542
           G     R
Sbjct: 362 GIAFKCR 368


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 200/367 (54%), Gaps = 9/367 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 GSISARR 542
           G     R
Sbjct: 362 GIAFKCR 368


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 200/367 (54%), Gaps = 9/367 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 GSISARR 542
           G     R
Sbjct: 362 GIAFKCR 368


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 201/367 (54%), Gaps = 9/367 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 GSISARR 542
           G     R
Sbjct: 362 GIAFKCR 368


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 140/367 (38%), Positives = 202/367 (55%), Gaps = 9/367 (2%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+DG
Sbjct: 63  HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360
           RLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L 
Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415
           S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+
Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++           
Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A S +    +    + + +K+    C+ +K+ WR  H   +  W D+ +     +Q  
Sbjct: 303 REATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361

Query: 536 GSISARR 542
           G     R
Sbjct: 362 GIAFKCR 368


>gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1]
 gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 524

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 128/480 (26%), Positives = 213/480 (44%), Gaps = 82/480 (17%)

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           +  + +   L  +L    G++   +++  ++ +L+  +I   A+  +  R  ++ ++  K
Sbjct: 91  VTKATKAADLTTWLRD-QGVETEGVAKAAVRQMLAG-DIEGAARQAVEIRAEAAKASTAK 148

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  + +    DGR RG    YGA  TGRW+G + Q QNLPR    +  L   +      +
Sbjct: 149 LTAMVKCACDDGRARGLHLVYGAG-TGRWAGRLIQLQNLPRGVIKKADLAIPLIIDGDID 207

Query: 352 TI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--- 404
            +      PL + S  +R C+I + G   + +D + IE R+ AW+A E+WKI+AF +   
Sbjct: 208 LVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDA 267

Query: 405 --GEDIYVTTYAKA-------FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
             G D+Y+    K        +  P+++ S E+   GKV ELALG+ GG   F++MA+  
Sbjct: 268 GTGRDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAIY 327

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G                                        K+     + +K AWR  H 
Sbjct: 328 G---------------------------------------MKVTDEEADQIKVAWREAHP 348

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            V+ LW+++ +     +   G + +       R+        + +VLPS R L Y+  + 
Sbjct: 349 RVVALWRNMEDAAFNAISNPGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRI 405

Query: 576 D------------------CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
           +                   +++  N+ T +  R  TYGG L EN +QAI+RD+L   + 
Sbjct: 406 EKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANALL 465

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                GY +V+ VHDE ++E       SV    S+M   P+WA GLP+ A G+   RYRK
Sbjct: 466 KLEAAGYPVVIHVHDEALAEVRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 524


>gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 328

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 127/333 (38%), Positives = 179/333 (53%), Gaps = 16/333 (4%)

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GED 407
           +A  + LAS  +R CI+A  GKKLVV+DL+ IE R+LAW+AGE WK+ AF       G D
Sbjct: 1   MASVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPD 60

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +Y   YA+AFN   + V+K QR IGKVMEL LG+ GG   F T A   GLDL++ +    
Sbjct: 61  LYKLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAAL 120

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                +   +A+  +     +   + + +++   AC+ +K+ WR  H      W  L   
Sbjct: 121 PNIPRDVQREAKGWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPETCDFWYQLERT 179

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NT 582
               +         +      L +RR    + I LPS R L Y      KG+ +Y+  N+
Sbjct: 180 VRTAIATPA-----KTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINS 234

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            + +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE++ E PDT  +
Sbjct: 235 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDY 294

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   L SL++ NP WA  +PL A G+EA  YRK
Sbjct: 295 TDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327


>gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 422

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 147/408 (36%), Positives = 199/408 (48%), Gaps = 56/408 (13%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNG 373
           TGRW+G +FQP NLPR   S+ ++   I A+  G       D + L S  +RSC+IA   
Sbjct: 21  TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTH 80

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFA------------------------------ 403
           KKLVVADL+ IE RVLAW+AGE  K+ AF                               
Sbjct: 81  KKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITL 140

Query: 404 ----------NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                      G+DIY   YA +F      V+K+QR IGKV ELALGY GG   F   A+
Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAA 200

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              +DL+  ++   +       E  E+      +Q P F + D+    AC++ K+AWR  
Sbjct: 201 MYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNA 258

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H  +   WK L       ++   +           + M+  +  + + LPS R L Y+  
Sbjct: 259 HPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAP 313

Query: 574 K----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLT
Sbjct: 314 RVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE+++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 422

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 146/408 (35%), Positives = 198/408 (48%), Gaps = 56/408 (13%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNG 373
           TGRW+G +FQP NLPR   S+ ++   I A+  G       D + L S  +RSC+IA   
Sbjct: 21  TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTH 80

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAF------------------------------- 402
           KKLVVADL+ IE RVLAW+AGE  K+ AF                               
Sbjct: 81  KKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITL 140

Query: 403 ---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                      G+DIY   YA +F      V+KEQR IGKV ELALGY GG   F   A+
Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAA 200

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              +DL+  ++   +       E  E+      +Q P F + D+    AC++ K+AWR  
Sbjct: 201 MYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNA 258

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H  +   W+ L       +    +           + ++  +  + + LPS R L Y+  
Sbjct: 259 HPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAP 313

Query: 574 K----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLT
Sbjct: 314 RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE+++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 106/564 (18%), Positives = 198/564 (35%), Gaps = 83/564 (14%)

Query: 28  AVITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFK 81
           A      +   D      D    E      D+L  L+    D  ++ +  N+ ++  +F 
Sbjct: 375 ACYIPVGHKVGDGEGLFADDKLAEGQLSLDDVLAALKPVLEDPAILKIFQNAKYDTKIFS 434

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCK 137
           +  G+++           A  +GL +   +               T +  GK+ I  F K
Sbjct: 435 RH-GLNVAPIDDTMLMSYAMFSGLHNHGMDTLSEHYLGHTPISIKTLLGTGKSAIT-FDK 492

Query: 138 GSI-DSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
             I D+  Y    A+  ++ WQLF     R  E    +++ L      ER L  +   + 
Sbjct: 493 VKIEDAVKYAAEDADVTLRLWQLFKPRLHR--EKVTTVYETL------ERPLVPVLAQME 544

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G ++D D + ++    AQ+   L+ +I +L      +      L   LF   G++   
Sbjct: 545 MHGVQVDRDTLSRMSNAFAQKMAGLEAEIHELAGQSF-NVGSPKQLGEILFDKLGLEGGK 603

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTL 309
             + T         +  LA    L         + KL     + L   +  D GR+  + 
Sbjct: 604 KGK-TGAYATGADVLEDLAAQHDLPARVLDWRQLSKLKSTYTDALQTHIDPDTGRVHTSY 662

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              GAS TGR +      QN+P +                              +R   +
Sbjct: 663 LQTGAS-TGRLASTDPNLQNIPIRT------------------------EEGRRIREAFV 697

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  GK LV  D + IE R+LA +AG +   +AF +GEDI+  T ++ F+ P+D+++ + R
Sbjct: 698 APEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDEMTPDVR 757

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              K +   + Y     G A+  +         + ++ +       + D   A +     
Sbjct: 758 RQAKAINFGVIYGISGFGLARNLRIARGEAQGFIDRYFEKYPGIKEYMDDTVAFAKEHGH 817

Query: 486 QDQ--------------------YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLW 521
                                      A+   + G+A +++++A       +    +++ 
Sbjct: 818 VATLFGRKIHTPEINAKGPHAGFARRAAINAPIQGSAADIIRRAMIRMPDAISGLPVKML 877

Query: 522 KDLTEGFACVVQEGGSISARRVAN 545
             + +     V+EGG   A  V  
Sbjct: 878 LQVHDELIFEVEEGGVDKAVSVIR 901


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 105/593 (17%), Positives = 202/593 (34%), Gaps = 88/593 (14%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56
            +D ET         L  + +   A +A     A+    + +   +   +  MP +    
Sbjct: 353 AVDTETTGLDEMVVDLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGLSEGQMPLEEAVA 412

Query: 57  -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L D  V+ +  N  ++  +  +  G+D+           A   GL     +    
Sbjct: 413 MLKDVLEDPAVLKIGQNMKYDAKILHRY-GVDVAPIDDTMLMSYALHAGLHGHGMDTLSE 471

Query: 116 LNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEAT 170
                        +  GK+ +        D+ PY    A+  ++ WQ F     ++   T
Sbjct: 472 RYLDHTPIPIKPLLGSGKSAVTFDRVPIEDAVPYAAEDADITLRLWQTFKPQLHQERVTT 531

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             +++ L      ER L  +   +   G ++D D + ++    AQ+   L+ +I +L   
Sbjct: 532 --VYETL------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGE 583

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF   G++     +   K       +  LA +  L R       + 
Sbjct: 584 TF-NVGSPAQLGEILFDKMGLEGGKRGKNG-KYSTGADILEDLATEHDLPRRVLDWRQLS 641

Query: 291 KL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + ++ D GR+  +    GAS TGR +      QN+P +           
Sbjct: 642 KLKSTYTDALQDHINKDTGRVHTSYAQTGAS-TGRMASTDPNLQNIPVRS---------- 690

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +A  G  L+  D + IE R+LA +AG +   +AFA 
Sbjct: 691 --------------EEGRRIREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAFAE 736

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G+DI+  T ++ F  P+++++ E R   K +   + Y     G A+  +         + 
Sbjct: 737 GQDIHALTASEMFGVPLEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRKDAQGFID 796

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIG 500
           ++ +       + D     +                                A+   + G
Sbjct: 797 RYFERFPGIRKYMDSTVEFAKEHGYVQTLFGRKIHTAEINAKGPKAGFAKRAAINAPIQG 856

Query: 501 TACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVAN 545
           TA +++++A     + +        LQ+  +L         E    +AR V  
Sbjct: 857 TAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPEAAVEDTIAAAREVME 909



 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           A+   +         ++ +   +  ++   Y              +    +  +  +   
Sbjct: 791 AQGFIDRYFERFPGIRKYMDSTVEFAKEHGYVQTLFGRKIHTAEINAKGPKAGFAKRAAI 850

Query: 600 NI-VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
           N  +Q  + D++   M             ++L VHDE++ E P+     ++     +M
Sbjct: 851 NAPIQGTAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPEAAVEDTIAAAREVM 908


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 100/514 (19%), Positives = 184/514 (35%), Gaps = 75/514 (14%)

Query: 46  DRTEQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  E           L   L DE+++ +  N  ++  +F + +GI +           A 
Sbjct: 396 DLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQ-VGITVAPIDDTMLMSYAM 454

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
             GL     +A                +  GK+ I        D+ PY    A+  ++ W
Sbjct: 455 HGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLNDAVPYAAEDADVTLRLW 514

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q F     R  + TR +++ L      ER +  +   +   G ++D D + ++    +Q+
Sbjct: 515 QQFKPALHR-AQVTR-VYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQK 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L+++I  L      +      L   LF   G+      + T         +  LA +
Sbjct: 567 MAALEDEIYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGK-TGAYATGADVLEDLATE 624

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L R       + KL     + L + ++ D GR+  +    GAS TGR +      QN+
Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  GK LV  D + IE R+LA
Sbjct: 684 PIRS------------------------EEGRRIREAFVAEEGKTLVALDYSQIELRILA 719

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            IA       AF +G+DI+  T ++ F+ P+D+++ E R   K +   + Y     G A+
Sbjct: 720 HIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLAR 779

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488
             +   S     + ++ +      T+ D  +A +      +                   
Sbjct: 780 NLRIPRSEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGYVETLFGRRIHTPNIGAKGPQA 839

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                 A+   + GTA +++++A       ++ L
Sbjct: 840 GFAARAAINAPIQGTAADVIRRAMIRMPAAIVDL 873


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 98/536 (18%), Positives = 187/536 (34%), Gaps = 80/536 (14%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D   +  MP       L   L D  VM +  N  ++  +F +  GI I           A
Sbjct: 397 DELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITPIDDTMLMSYA 455

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
              GL     +       S       + +  GK+ I        D+  Y    A+  ++ 
Sbjct: 456 MHGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRVPVEDAVKYAAEDADITLRL 515

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W +F     +D      +++ L      ER L  +   +   G ++D D + ++    +Q
Sbjct: 516 WTIFKPQLHQDRVT--RVYEGL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFSQ 567

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  +L+ +I +L      +      L   LF   G++     + T         +  LA 
Sbjct: 568 KMAQLEAEIHELAGESF-NVGSPKQLGEILFDKMGLEGGKKGK-TGAYATGADVLEDLAT 625

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L         + KL     + L E ++   GR+  +    GA+ TGR +      QN
Sbjct: 626 EHELPARVLDWRQLSKLKSTYTDALQEHINKETGRVHTSYVIAGAN-TGRLASTDPNLQN 684

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  GK +V  D + IE R+L
Sbjct: 685 IPVRS------------------------EEGRRIREAFVAPEGKTIVSLDYSQIELRIL 720

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A +AG D   +AF  G+DI+  T ++ FN P+++++ E R   K +   + Y     G A
Sbjct: 721 AHMAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVIYGISGFGLA 780

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +         + ++ +      T+ D   A +      +                  
Sbjct: 781 RNLRIPRGEAQAFIDRYFERFPGIKTYMDETVAFAKEHKRVETLFGRIIHTPEISASGPR 840

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A       +     ++   + +     V++G  
Sbjct: 841 AGFAKRAAINAPIQGTAADIIRRAMVRMPGAIAEIPAKMLLQVHDELIFEVEQGAE 896


>gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1]
 gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 516

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 204/455 (44%), Gaps = 81/455 (17%)

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           ++  ++ +L+  +I   A+  +  R  ++ ++  KL  + +    DGR RG    YGA  
Sbjct: 107 TKAAVRQMLAG-DIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG- 164

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASN 372
           TGRW+G + Q QNLPR    +  L   +      + +      PL + S  +R C+I + 
Sbjct: 165 TGRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAE 224

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKA-------FNTP 420
           G   + +D + IE R+ AW+A E+WKI+AF +     G D+Y+    K        +  P
Sbjct: 225 GCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAHP 284

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +++ S+E+   GKV ELALG+ GG   F++MA+  G                        
Sbjct: 285 LNENSQERTPYGKVPELALGFGGGVGAFQSMAAIYG------------------------ 320

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                           K+     + +K AWR  H  V+ LW+++ +     +   G + +
Sbjct: 321 ---------------MKVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVS 365

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------------------CSYL-- 580
                  R+        + +VLPS R L Y+  + +                   +++  
Sbjct: 366 ---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMSV 422

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
           N+ T +  R  TYGG L EN +QAI+RD+L   +      GY +V+ VHDE ++E     
Sbjct: 423 NSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG- 481

Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             SV    S+M   P+WA GLP+ A G+   RYRK
Sbjct: 482 VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/539 (17%), Positives = 179/539 (33%), Gaps = 81/539 (15%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
                 L   L D  V+ +  N  ++  +  +  GID+           A   G  +   
Sbjct: 407 EQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY-GIDVAPIDDTMLMSYALHAGEHNHGM 465

Query: 111 NACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFG-EYCK 164
           +                 +  GK+ I        D+ PY    A+  ++ WQ F  E  +
Sbjct: 466 DILSERYLDHKPIPIKPLLGTGKSAITFDRVPIADAVPYAAEDADITLRLWQHFKPELHQ 525

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           R V    E           ER L  +   +   G ++D D + ++    AQ+   L+++I
Sbjct: 526 RQVTVVYETL---------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQKMAALEDEI 576

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L      +      L   LF    +      + T         +  LA +  L  L  
Sbjct: 577 HALAGQPF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYATGADILEDLATEHALPALVL 634

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++ D GR+  +    GA+ TGR +      QN+P +     
Sbjct: 635 DWRQLSKLKSTYTDALQDHINPDTGRVHTSYIQTGAN-TGRMASSDPNLQNIPVRS---- 689

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +   G  L+  D + IE R+LA +AG D  
Sbjct: 690 --------------------EEGRRIREAFVPEQGNVLLSLDYSQIELRILAHVAGIDAL 729

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
             AFA G+DI+  T ++ F+ P+++++ + R   K +   + Y     G A+  +   + 
Sbjct: 730 KAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAINFGVIYGISGFGLARNLRIPRAE 789

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494
               + ++ +       + D     +                                A+
Sbjct: 790 AQGFIDRYFERFPGIRAYMDRTVEFAKEHGYVQTLFGRKIHTPEIAAKGPRAGFAKRAAI 849

Query: 495 KDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVAN 545
              + GTA +++++A       +        LQ+  +L         E    +ARRV  
Sbjct: 850 NAPIQGTAADVIRRAMVKMPPAIAHLPARMLLQVHDELLFEVPEAAVEETIETARRVME 908


>gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 341

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 149/345 (43%), Gaps = 35/345 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + ++ ID+ET S   + K GV+ YAE     I L A + D   V ++D      +P ++L
Sbjct: 4   IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             +  + V+  A N+ FERI     +                  G  +    W CT + +
Sbjct: 64  DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAW 156
              GLP SL+     L   +   KM+EGK LI  F   CK +  +         H  + W
Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQ--KMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKW 181

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +F  Y KRDVE    + ++L   P+ D   + +LLDQ INDRG  +DL +V        
Sbjct: 182 TVFKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDE 241

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + +  + ++++ LTD  I +      ++ +L    GI++  + +  +  ++   +  +  
Sbjct: 242 RSKATITDEMLGLTD--IDNPNSVSQMKSWLSD-QGIEVESLGKKVVAEMIK--DAPEDL 296

Query: 275 KDLILNRLASSGSAILKLN--TLSEAVSSDGRLRGTLQFYGASRT 317
             ++  R   + S++ ++    L   +S+      T+ +     T
Sbjct: 297 AQVLSLRQQLAKSSVNRVGEIPLRREISTSHTTVRTVPYTAVQST 341


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 98/549 (17%), Positives = 189/549 (34%), Gaps = 83/549 (15%)

Query: 46  DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  +      D L  L+    D +++ +  N  ++  +F +  GID+           A 
Sbjct: 400 DLADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAPIDDTMLMSYAM 458

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
             G      +       +         +  GK+ I        D+  Y    A+  ++ W
Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF     +    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L+ +I +L      +      L   LF   G++     + T         +  LA +
Sbjct: 571 MAGLEAEIHELAGQNF-NVGSPKQLGEILFDKLGMEGGKKGK-TGAYATGADILEDLATE 628

Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L  L      + KL     + L + ++   GR+  +    GA+ TGR +      QN+
Sbjct: 629 HALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNI 687

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +   G  L+  D + IE R+LA
Sbjct: 688 PIRS------------------------EEGRRIREAFVPEEGNVLLALDYSQIELRILA 723

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            +AG D   +AFA G+DI+  T ++ FN P+++++ + R   K +   + Y     G A+
Sbjct: 724 HVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLAR 783

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488
             +   +     + ++ +       + D   A +                          
Sbjct: 784 NLRIPRAEAQGFIDRYFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEISAKGPRA 843

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSI 538
                 A+   + GTA +++++A       +        LQ+  +L         E    
Sbjct: 844 GFAKRAAINAPIQGTAADVIRRAMIRMPAAIAHLPARMLLQVHDELLFEVPEAAVEDTIE 903

Query: 539 SARRVANVP 547
           +AR+V    
Sbjct: 904 TARQVMETA 912


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 108/548 (19%), Positives = 194/548 (35%), Gaps = 85/548 (15%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D  E   MP       L   L D  VM +  N  ++  +F +  G+ I           A
Sbjct: 398 DLAEG-QMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GVRIAPIDDTMLMSYA 455

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEE---GKALIARFCKGSI-DSPPYDCTRAN-HVQA 155
              GL     +A      S     ++E       +  F +  I D+  Y    A+  ++ 
Sbjct: 456 MNAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTFDQVPIEDAVKYAAEDADITLRL 515

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W L      R+   TR +++ +      ER L  +   +   G ++D D + ++    +Q
Sbjct: 516 WTLLKPQLHRN-HVTR-VYETM------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFSQ 567

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L+ +I +L      +      L   LF   G++     + T         +  LA 
Sbjct: 568 KMAALEAEIHELAGESF-NVGSPKQLGEILFDKMGLEGGKKGK-TGAYATGADVLEDLAT 625

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L         + KL     + L E ++ D GR+  +    GA+ TGR S      QN
Sbjct: 626 EHELPARVLDWRQLSKLKSTYTDALQEHINKDTGRVHTSYVISGAN-TGRLSSTDPNLQN 684

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  GK +V  D + IE R+L
Sbjct: 685 IPVRS------------------------EEGRRIREAFVAPEGKTIVALDYSQIELRIL 720

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A +A  D   +AF +G+DI+  T ++ FN P+D+++ E R   K +   + Y     G A
Sbjct: 721 AHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINFGVIYGISGFGLA 780

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   S     + ++ +      T+ D   A +      +                  
Sbjct: 781 RNLRIPRSEAQGFIDRYFERFPGIRTYMDDTVAFAKEHKRVETLFGRVIHTPEIAAKGPR 840

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A       +        LQ+  +L        +E   
Sbjct: 841 AGFAKRAAINAPIQGTAADIIRRAMIRMPDAIEKLPATMLLQVHDELIFEVEQGAEEALI 900

Query: 538 ISARRVAN 545
            +AR V  
Sbjct: 901 SAARTVME 908


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 183/514 (35%), Gaps = 75/514 (14%)

Query: 46  DRTEQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  E           L   L DE+++ +  N  ++  +F + +GI +           A 
Sbjct: 396 DLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQ-VGITVAPIDDTMLMSYAM 454

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
             GL     +A                +  GK+ I        ++ PY    A+  ++ W
Sbjct: 455 HGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLSEAVPYAAEDADVTLRLW 514

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q F     R  + T ++++ L      ER +  +   +   G ++D D + ++    +Q+
Sbjct: 515 QQFKPALHR-AQVT-KVYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQK 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L++++  L      +      L   LF   G+      + T         +  LA +
Sbjct: 567 MAALEDEVYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGK-TGAYATGADVLEDLATE 624

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L R       + KL     + L + ++ D GR+  +    GAS TGR +      QN+
Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  GK LV  D + IE R+LA
Sbjct: 684 PIRS------------------------EEGRRIREAFVAEEGKTLVALDYSQIELRILA 719

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            IA       AF +G+DI+  T ++ F+ P+D+++ E R   K +   + Y     G A+
Sbjct: 720 HIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLAR 779

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488
             +   S     + ++ +       + D  +A +      +                   
Sbjct: 780 NLRIPRSEAQGFIDRYFERFPGIRAYMDDTKAFAKEHGYVETLFGRRIHTPNIGAKGPQA 839

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                 A+   + GTA +++++A       + +L
Sbjct: 840 GFAARAAINAPIQGTAADVIRRAMIRMPAAIAEL 873


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 97/550 (17%), Positives = 188/550 (34%), Gaps = 82/550 (14%)

Query: 46  DRTEQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  E           L   L D+ ++ +  N  ++  +F +  GIDI           A 
Sbjct: 398 DLAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDITPIDDTMLLSYAL 456

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
             G+     +               + +  GK+ I        D+ PY    A+  ++ W
Sbjct: 457 HGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVPIDDATPYAAEDADITLRLW 516

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q F     +    T  +++ L      ER L  +   +   G ++D D + ++    +Q+
Sbjct: 517 QQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQNGIKVDRDTLSRMSNAFSQK 568

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L+ +I +L      +      L   LF    +      + T         +  LA +
Sbjct: 569 MAALEAEIHELAGESF-NVGSPKQLGEILFDKLSLPGGKKGK-TGAYATGADILEDLATE 626

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L         + KL     + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 627 HELPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G  L+  D + IE R+LA
Sbjct: 686 PVRS------------------------EEGRRIREAFVAEEGNVLLSLDYSQIELRILA 721

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            +AG D   +AFA+G DI+  T ++ F+ P+++++ E R   K +   + Y     G A+
Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAINFGVIYGISGFGLAR 781

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY---------------- 489
             +         + ++ +       + D     +  H ++Q  +                
Sbjct: 782 NLRIPRGEAQGFIDRYFERFPGIRQYMDDTVNFAKDHGYVQTLFGRKIHTPEIAAKGPRA 841

Query: 490 ---PEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542
                 A+   + GTA +++++A       +     ++   + +     V E        
Sbjct: 842 SFAKRAAINAPIQGTAADVIRRAMVRMPDAIAHLPARMLLQVHDELLFEVPED---HVDE 898

Query: 543 VANVPRLVMR 552
             +V R +M 
Sbjct: 899 TISVAREIME 908



 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + D++   M             ++L VHDE++ E P+       ++   +M
Sbjct: 853 IQGTAADVIRRAMVRMPDAIAHLPARMLLQVHDELLFEVPEDHVDETISVAREIM 907


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 97/549 (17%), Positives = 188/549 (34%), Gaps = 83/549 (15%)

Query: 46  DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  +      D L  L+    D +++ +  N  ++  +F +  GID+           A 
Sbjct: 400 DLADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAPIDDTMLMSYAM 458

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
             G      +       +         +  GK+ I        D+  Y    A+  ++ W
Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF     +    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L+ +I +L      +      L   LF   G++     + T         +  LA +
Sbjct: 571 MAGLEAEIHELAGQNF-NVGSPKQLGEILFDKLGMEGGKKGK-TGAYATGADILEDLATE 628

Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L  L      + KL     + L + ++   GR+  +    GA+ TGR +      QN+
Sbjct: 629 HALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNI 687

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +   G  L+  D + IE R+LA
Sbjct: 688 PIRS------------------------EEGRRIREAFVPEEGNVLLALDYSQIELRILA 723

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            +AG D   +AFA G+DI+  T ++ FN P+++++ + R   K +   + Y     G A+
Sbjct: 724 HVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLAR 783

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488
             +   +     + ++ +       + D   A +                          
Sbjct: 784 NLRIPRAEAQGFIDRYFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEISAKGPRA 843

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSI 538
                 A+   + GTA +++++A       +        LQ+  +L         E    
Sbjct: 844 GFAKRAAINAPIQGTAADVIRRAMIRMPAAIAHLPARMLLQVHDELLFEVPEAAVEDTIE 903

Query: 539 SARRVANVP 547
           +A +V    
Sbjct: 904 TASQVMETA 912


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 105/548 (19%), Positives = 196/548 (35%), Gaps = 85/548 (15%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D  E   +P++     L   L D +++ +  N  ++  +F + LGI++           A
Sbjct: 395 DLAEG-QIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ-LGINVAPIDDTMLLSYA 452

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
              GL     +       S         +  GK+ I        D+  Y    A+  ++ 
Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R V  T ++++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 513 WQLFKPQLHR-VGVT-KVYETL------ERPLVPVLAAMERSGVKVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L++DI +L      +      L   LF   G++     + T         +  LA 
Sbjct: 565 KMAGLEDDIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGK-TGAYATGADVLEDLAT 622

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L         + KL     + L + ++ D GR+  +    GAS TGR +      QN
Sbjct: 623 EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQN 681

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  GK LV  D + IE R+L
Sbjct: 682 IPIRS------------------------EEGRRIREAFVAEPGKALVALDYSQIELRIL 717

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A IA      +AF +G DI+  T ++ F  P+D+++ + R   K +   + Y     G A
Sbjct: 718 AHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLA 777

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   +     + ++ +      T+ +  +A +                         
Sbjct: 778 RNLRIPRAEAQGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEISAKGPR 837

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A       +        LQ+  +L        ++   
Sbjct: 838 AGFAQRAAINAPIQGTAADVIRRAMIRMPDAIKDLPATMLLQVHDELLFEVEKGAEDDLI 897

Query: 538 ISARRVAN 545
            +AR V  
Sbjct: 898 AAARHVME 905


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 148/701 (21%), Positives = 255/701 (36%), Gaps = 156/701 (22%)

Query: 5   FIDIETRSP---------------------QPLPKVGVWAYAEQA--VITLCAYAWDDE- 40
             D ET S                        +  VG   YAE     I    Y   D  
Sbjct: 36  SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95

Query: 41  ------PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-----GIDIP 89
                 P            P+DL++++ +   +  A N  FE  ++   L        + 
Sbjct: 96  GRRAYIP--------GGPKPTDLIEHIANGGPI-AAWNITFEFWIWNMVLAKREGWPWLQ 146

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG---SIDSPPYD 146
            ++  C    AR   LP SL  A  AL       K ++GK LI + C+    +   P   
Sbjct: 147 LEQCYCDMAKARRFSLPGSLDAAAQALK---TSPKDKKGKQLINKLCRPVSATKARPLPR 203

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            T     Q +     YC +DV++   +      ++  ER+ WL DQ IN RG ++D++ +
Sbjct: 204 WTLYTAPQDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESL 263

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
               +++ Q  ++   ++  +T+G + S  +   +  +L    G  + +++  ++   L 
Sbjct: 264 DNALDIVDQTTRRFTMELAAITNGAVGSVSEVAKMTDFLAG-LGCRMHNLTADSVSEALE 322

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
             ++   A+ ++  R A +G+ + KL +L   +SSDGRLR    F+GA  TGRWS    Q
Sbjct: 323 RDDLNPTARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQ 381

Query: 327 PQNLPRQERSEEILTQTIQALNRGETI--------------------------------- 353
            QNL  +    +      + + +  TI                                 
Sbjct: 382 LQNLTSKGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALK 441

Query: 354 --------------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                          DP+ L S C+R   IA+ GKK V  D + IEA VLA +A  +W++
Sbjct: 442 DLTHRNLDLIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRL 501

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV----------SKEQRAIGKVMELALGYQGGAKVFK 449
           + F     IY  + +K    P +++             ++++GKV ELA GY G    +K
Sbjct: 502 EVFRTHGKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWK 561

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
              +                  F D ++ +   L  +D  PE              + + 
Sbjct: 562 AFGAEAH---------------FADDDEMKKAILGWRDASPE--------------IVEF 592

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           W  +++      K   E F        +I +  +   V  +    H   ++  LPS R L
Sbjct: 593 WGGQYRRDPFTRKWTKEYFGLEGAAIMAILNPGKCYAVHDITYAVHDDVLYCRLPSGRFL 652

Query: 569 VYSDVKG-----------DCSYLNTATS------QLMRERT 592
            Y   +              +++   T+        +R  T
Sbjct: 653 QYHQPRLVESDSWKGPEYQITFMGYNTNSQKGPVGWVRMDT 693


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 184/520 (35%), Gaps = 75/520 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D+ ++ +  N  ++  +F +  GI +           A   G+     +     
Sbjct: 416 LKPMLEDDAILKIGQNMKYDAKIFARH-GIRVAPFDDTMLMSYALNAGIHGHGMDTLSER 474

Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
             S     ++E    GK+ +        D+  Y    A+  ++ W +F     R  E   
Sbjct: 475 YLSHQPIPIKELLGTGKSAVTFDRVPVADAVKYAAEDADITLRLWHVFKPQLHR--EKVT 532

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +++ L      ER L  +   +   G ++D + + ++    AQ+  +L+E+I +L    
Sbjct: 533 TVYETL------ERPLSPVLAQMERNGIKVDRETLSRMSGKFAQKMAQLEEEIHELAGRK 586

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF   G+D     + T         +  LA +  L        A+ K
Sbjct: 587 F-NVGSPKQLGEILFDEMGLDGGKRGK-TGAYATGADVLEDLATEHDLPARVLDWRALSK 644

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + +  D GR+  +    GA+ TGR +      QN+P +            
Sbjct: 645 LKSTYTDALQDHIDPDTGRVHTSYVQTGAT-TGRLASTDPNLQNIPVRS----------- 692

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G  LV  D + IE R+LA IA  D   +AF +G
Sbjct: 693 -------------EEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDG 739

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           +DI+  T ++ F+ P+D+++ E R   K +   + Y     G A+  +         + +
Sbjct: 740 QDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDR 799

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGT 501
           + +      T+ D     +                                A+   + GT
Sbjct: 800 YFERFPGIKTYMDKTVDFAKEHGFVQTLFNRKIHTPEISAKGPRAGFARRAAINAPIQGT 859

Query: 502 ACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGS 537
           A +++++A       +     ++   + +     V+ G +
Sbjct: 860 AADIIRRAMIRMPAAIEGMPAKMLLQVHDELIFEVEAGAA 899


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/523 (19%), Positives = 178/523 (34%), Gaps = 93/523 (17%)

Query: 46  DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  E     ++ L+ L+    DE ++ +  N  ++  + K+  GID+           A 
Sbjct: 398 DLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKRC-GIDVAPCDDTMLISYAL 456

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
             GL     +A      S     ++E    GKA+I  F K  ID      TR        
Sbjct: 457 NAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMIT-FDKVPID----KATR-------- 503

Query: 158 LFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
               Y   D + T  L++ L P              ER L  +   +   G ++D D + 
Sbjct: 504 ----YAAEDADVTLRLWQVLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLS 559

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++    AQ+   L+ +I +L      +      L   LF   G++     + T       
Sbjct: 560 RMSSAFAQKMGALEAEIHELAGERF-NVGSPKQLGEILFDKMGMEGGKKGK-TGAYATGA 617

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             +  LA    L         + KL     ++L   +    GR+  + Q  GA+ TGR +
Sbjct: 618 DVLEDLATLHELPARVLDWRQLSKLKSTYTDSLQTHIHPETGRVHTSYQQTGAN-TGRLA 676

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   IA  GK L+  D 
Sbjct: 677 STDPNLQNIPVRS------------------------EEGRRIREAFIAEEGKVLLSLDY 712

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA IA      +AF  G+DI+  T ++ F  P+++++ E R   K +   + Y
Sbjct: 713 SQIELRILAHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIY 772

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------- 488
                G A+  +   +     + ++ +       +                         
Sbjct: 773 GISGFGLARNLRIPRAEAQGFIDRYFERFPGIKDYMAETTEFGKKNGYVQTLFGRRIHTP 832

Query: 489 -----------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                          A+   + GTA +++++A       +L L
Sbjct: 833 EIDAKGPRAGFARRAAINAPIQGTAADIIRRAMIRMPDAILGL 875


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/536 (18%), Positives = 191/536 (35%), Gaps = 81/536 (15%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D  E   +P++     L   L D ++M +  N  ++  +F + LGI +            
Sbjct: 394 DLAEG-QIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ-LGITVAPIDDTMLLSYV 451

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
              GL     +A                +  GK+ +         + PY    A+  ++ 
Sbjct: 452 MHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVTFDKVPLAQAVPYAAEDADITLRL 511

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R ++ T ++++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 512 WQLFKPQLHR-IQVT-KVYETL------ERPLVPVLAAMERSGIKVDRDTLSRMSNAFAQ 563

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L+++I +L      +      L   LF   G++     + T         +  LA 
Sbjct: 564 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGK-TGAYATGADVLEDLAT 621

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L         + KL     + L + ++ D GR+  +    GAS TGR +      QN
Sbjct: 622 EHDLPGRILDWRQLSKLKSTYTDALQDHINKDTGRVHTSYSIAGAS-TGRLASTDPNLQN 680

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  GK LV  D + IE R+L
Sbjct: 681 IPIRS------------------------EEGRRIREAFVAEEGKVLVALDYSQIELRIL 716

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A IA      +AF +G DI+  T ++ F  P+D+++ + R   K +   + Y     G A
Sbjct: 717 AHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIYGISGFGLA 776

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   +     + ++ +      T+ D  +A +                         
Sbjct: 777 RNLRIPRAEAQGFIDRYFERFPGIRTYMDNTKAFAKEHGFVQTLFGRKINTPEIGAKGPR 836

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL----WKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A       +  +       + +     V++G  
Sbjct: 837 AGFAQRAAINAPIQGTAADVIRRAMIRMPAAIKDIPATMLLQVHDELLFEVEKGAE 892


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 93/546 (17%), Positives = 180/546 (32%), Gaps = 83/546 (15%)

Query: 47  RTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
             E   MP D     L   L D  ++ +  N  ++  +  +  G D+           A 
Sbjct: 400 LAEG-QMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY-GADVAPIDDTMLMSYAL 457

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
             GL     +                 +  GK+ I        ++ PY    A+  ++ W
Sbjct: 458 HAGLHGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIANAVPYAAEDADITLRLW 517

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF     +  E    +++ L      ER L  +   +   G ++D +++ ++    AQ+
Sbjct: 518 QLFKPQLHQ--EQVTTVYETL------ERPLVPVLAQMERHGIKVDREVLSRMSNAFAQK 569

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L+ +I ++      +      L   LF    +      + T         +  LA +
Sbjct: 570 MAGLESEIHEMAGADF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYATGADILEDLATE 627

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L  L      + KL     + L + ++++ R   T      + TGR +      QN+P
Sbjct: 628 HALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTGASTGRMASTDPNLQNIP 687

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   +A  G  L+  D + IE R+LA 
Sbjct: 688 VRT------------------------EEGRRIREAFVAGEGNVLLSLDYSQIELRILAH 723

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           +AG D   +AFA G+DI+  T ++ F+ P+ +++ + R   K +   + Y     G A+ 
Sbjct: 724 MAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAINFGVIYGISGFGLARN 783

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------- 488
            +         + ++ Q       + D     +                           
Sbjct: 784 LRIPRKEAQDFIDRYFQRFPGIRRYMDSTVEFAKEHGFVQTLFGRKIHTAEINAKGPRAG 843

Query: 489 -YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSIS 539
                A+   + GTA +++++A       +        LQ+  +L         E     
Sbjct: 844 FAKRAAINAPIQGTAADVIRRAMIRMPGAIAHLPARMLLQVHDELLFEVPEAAVEETIAV 903

Query: 540 ARRVAN 545
           A+ V  
Sbjct: 904 AKEVME 909


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/548 (18%), Positives = 197/548 (35%), Gaps = 85/548 (15%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D  E   +P++     L   L D +++ +  N  ++  +F + LGI++           A
Sbjct: 395 DLAEG-QIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ-LGINVAPIDDTMLLSYA 452

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
              GL     +       S         +  GK+ I        D+  Y    A+  ++ 
Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R V  T ++++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 513 WQLFKPQLHR-VGVT-KVYETL------ERPLVSVLAAMERSGVKVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L+++I +L      +      L   LF   G++     + T         +  LA 
Sbjct: 565 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGK-TGAYATGADVLEDLAT 622

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L         + KL     + L + ++ D GR+  +    GAS TGR +      QN
Sbjct: 623 EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQN 681

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  GK LV  D + IE R+L
Sbjct: 682 IPIRS------------------------EEGRRIREAFVAEPGKALVALDYSQIELRIL 717

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A IA      +AF +G DI+  T ++ F  P+D+++ + R   K +   + Y     G A
Sbjct: 718 AHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLA 777

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   +     + ++ +      T+ +  +A +                         
Sbjct: 778 RNLRIPRAEAQGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEINAKGPR 837

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A       +        LQ+  +L        ++   
Sbjct: 838 AGFAQRAAINAPIQGTAADVIRRAMIRMPHAIKDLPATMLLQVHDELLFEVEKGAEDDLI 897

Query: 538 ISARRVAN 545
            +AR+V  
Sbjct: 898 AAARQVME 905


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 110/608 (18%), Positives = 194/608 (31%), Gaps = 115/608 (18%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56
            +D ET         L  V +     +A     A+  D       D     A  ++    
Sbjct: 346 AVDTETTGLNEMRADLVGVSLCVDPGRAAYLPLAHK-DGGGAD--DLFGGEAKLAEGQLD 402

Query: 57  -------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
                  L   L D  V+ +  N  ++  +  +  GI +           A   GL    
Sbjct: 403 FETALGMLKPVLEDPAVLKIGQNMKYDAKILARN-GITVAPIDDTMLLSYALHAGLHGHG 461

Query: 110 KNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +A              T +  GK+ I  F    I                +   +Y   
Sbjct: 462 MDALSERYLDHTPIPIKTLLGTGKSAIT-FDFVPI----------------EEATKYAAE 504

Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           D E T  L++RL P              ER +  +   +  RG ++D D + ++    AQ
Sbjct: 505 DAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L+ +I +L      +      L   LF   G +     +   K       +  LA 
Sbjct: 565 KMAGLEAEIHELAGESF-NVGSPAQLGEILFEKMGFEGGKTGKSG-KYSTPADVLEDLAT 622

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L R       + KL     + L + ++   GR+  +    GA+ TGR +      QN
Sbjct: 623 EHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGAN-TGRLASTDPNLQN 681

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  G  LV  D + IE R+L
Sbjct: 682 IPVRS------------------------EEGRRIREAFVAEPGHVLVSLDYSQIELRIL 717

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A IAG D    AF +G DI+  T ++ F+ P+D+++ E R   K +   + Y     G A
Sbjct: 718 AHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGLA 777

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   +     +  + +       + D   A +                         
Sbjct: 778 RNLRIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEIGAKGPQ 837

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A       +        LQ+  +L         +   
Sbjct: 838 AGFAKRAAINAPIQGTAADIIRRAMVRMPAAIADLPARMLLQVHDELIFEVEEDAVDRVI 897

Query: 538 ISARRVAN 545
            + R+V  
Sbjct: 898 PAVRQVME 905


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 99/594 (16%), Positives = 199/594 (33%), Gaps = 96/594 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  V     A  A      + +   P +L    ++  + + L   L 
Sbjct: 354 DTETDSLDTLTANLVGVSFAISAGDAAYLPLGHDYLGAPEQL----DREVVLAALKPLLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  ++ +  N  F+R +  +  GI++    +  T + +      + +    +      HL
Sbjct: 410 DSNLLKIGQNIKFDRGVLARY-GIELQGIAY-DTMLESYVLNSVAGMGRHDMDSLAERHL 467

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                    IA   K  +                +    Y   D + T  L + + P  +
Sbjct: 468 NHKTTTFEEIAGKGKNQLTFNQVAV---------EQAAMYAAEDADVTLLLHQAMWPQLE 518

Query: 183 G-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                       E  L ++   +   G  ID +++ +  + I     +L+++  +L   +
Sbjct: 519 KAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITARLDELEKEAHELAGEV 578

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              +     L+  LF    + +V  +     S  +   + +LA    L ++      + K
Sbjct: 579 FNLA-SPKQLQTILFEKLQLPVVKKTPNGAPST-NEEVLEELADTHALPKVILEHRGLAK 636

Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           L     + L + V    +   T      + TGR S      QN+P + +           
Sbjct: 637 LKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNK----------- 685

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G +++ AD + IE R++A ++ +   +KAFA G+
Sbjct: 686 -------------EGRRIRQAFVAPEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAEGK 732

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
           DI+  T A+ F  P+++V+ EQR   K +   L Y   A    +            +  +
Sbjct: 733 DIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYMDLY 792

Query: 463 SQNVKSTSTFEDWEQ---------------------AESHHLWMQDQYPEFAVKDKLIGT 501
            +       + +  +                      +S +   +      A+   + GT
Sbjct: 793 FERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSRNAMRRKAAEREAINAPMQGT 852

Query: 502 ACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++KKA  A          K + ++Q+  +L         E      R +  
Sbjct: 853 AADIIKKAMIAVDDWIVSEEPKVRMIMQVHDELVFEVHESELEYAEQKIRELME 906



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
           Q  + DI+ + M          +    +++ VHDE+V E  ++   ++   +  LM
Sbjct: 850 QGTAADIIKKAMIAVDDWIVSEEPKVRMIMQVHDELVFEVHESELEYAEQKIRELM 905


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 94/550 (17%), Positives = 187/550 (34%), Gaps = 82/550 (14%)

Query: 46  DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  E      D L+ L+    D+ ++ +  N  ++  +F +  GID+           A 
Sbjct: 398 DLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDVTPIDDTMLLSYAL 456

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
             G+     +               + +  GK+ I        D+ PY    A+  ++ W
Sbjct: 457 HGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIEDATPYAAEDADITLRLW 516

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q F     +    T  +++ L      ER L  +   +   G ++D D + ++    +Q+
Sbjct: 517 QQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQHGIKVDRDTLSRMSNAFSQK 568

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L+ +I +L      +      L   LF    +      + T         +  LA +
Sbjct: 569 MAALEAEIHELAGETF-NVGSPKQLGEILFDKMSLPGGKKGK-TGAYATGADILEDLATE 626

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L         + KL     + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 627 HTLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G  L+  D + IE R+LA
Sbjct: 686 PVRS------------------------EEGRRIREAFVADEGNVLLSLDYSQIELRILA 721

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            +AG D   +AFA+G DI+  T ++ F+ P+++++ + R   K +   + Y     G A+
Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINFGVIYGISGFGLAR 781

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488
             +         + ++ +       + D     +                          
Sbjct: 782 NLRIPRGEAQGFIDRYFERFPGIRQYMDDTVNFAKEHGYVQTLFGRKIHTPEIAAKGPRA 841

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542
                 A+   + GTA +++++A     + +     ++   + +     V E        
Sbjct: 842 SFAKRAAINAPIQGTAADVIRRAMVRMPEAIAHLPARMLLQVHDELLFEVPED---HVEE 898

Query: 543 VANVPRLVMR 552
             +V R +M 
Sbjct: 899 TISVAREIME 908



 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + D++   M             ++L VHDE++ E P+       ++   +M
Sbjct: 853 IQGTAADVIRRAMVRMPEAIAHLPARMLLQVHDELLFEVPEDHVEETISVAREIM 907


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/568 (17%), Positives = 186/568 (32%), Gaps = 94/568 (16%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL-----WDRTEQSAMP 54
           L  D E  S       L  V     A +A     A+        L      +      +P
Sbjct: 382 LAFDTEASSLSAMKCDLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKAVEDEIGPQLP 441

Query: 55  SD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
            D     L   L D+ V+ +  N  ++ ++ ++  GI +       T +++      +SL
Sbjct: 442 IDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAPFD--DTMLISYALDASASL 498

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               +       L         +    KG+         +            Y   D + 
Sbjct: 499 AGHGMDELSERFLGHKPMSYKELCGSGKGARPIAACAIDKVTA---------YAAEDADV 549

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L++ L P              ER L  +   + +RG ++D  ++ +L    AQ++  
Sbjct: 550 TLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSRLSGRFAQKQAG 609

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278
           L+ +I ++      +      L   LF   G+     ++   +       +  LA +   
Sbjct: 610 LEAEIAEIAGETF-NPGSPKQLGEVLFGKLGLPGGKKTKSG-QWSTDVRVLEDLAAEGHP 667

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           L R       + KL     +TL   + + GR+  +     ++ TGR S      QN+P +
Sbjct: 668 LPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSM-ASTTTGRLSSSEPNLQNIPVR 726

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R+  +A  G  LV AD + IE R+LA IA
Sbjct: 727 T------------------------EEGRAIRTAFVAPAGHSLVSADYSQIELRILAHIA 762

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 +AF  G DI+  T ++ F  P++ +  E R   K +   + Y     G A    
Sbjct: 763 DIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLS 822

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                 G  ++++ +       + D                     +    S +  ++  
Sbjct: 823 IPRDEAGTYIKRYFERFPGIRDYMDSTKAFAKEHGHVETLFGRRVHYPDIRSPNASVRAF 882

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQG 516
               A+   + GTA +++++A       
Sbjct: 883 NERAAINAPIQGTAADIIRRAMIRMEPA 910


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 120/595 (20%), Positives = 214/595 (35%), Gaps = 104/595 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
            ID+ET S  P  +  V  YA       A      + +   P +L     ++ +   L  
Sbjct: 317 AIDLETTSLNP-REARVVGYAVSCRPHEARYIPVGHRYLGAPEQLP----EALVLEILGP 371

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALN 117
            L+D     +  N  ++  + +   G ++  +   C ++LA     P+  S     LAL 
Sbjct: 372 LLKDPARRKIGQNLKYDYQVLRMA-GFEM--EGIWCDTMLAAYLVNPARNSQGLDALALE 428

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           + +H        A +A   K  ++    D  RA         G Y   D +AT  L + L
Sbjct: 429 YLDHRMI---SYAEVAGSGKCELNFSEVDLDRA---------GPYSCEDADATYLLHEIL 476

Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +P          L D E  L  +   +   G ++D+DL+ +L     ++  +L+  I + 
Sbjct: 477 LPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIELEAQIHEH 536

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      L   LF   G+ +   ++G      +   + +LA++  + RL     
Sbjct: 537 CGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLLLQYR 595

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           +I KL     + L + V    GR+  +      + TGR S      QN+P +        
Sbjct: 596 SISKLKSTYTDALPKLVDPATGRVHTSYN-QAVTSTGRLSSSDPNLQNIPIR-------- 646

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                           G     +R   IA  G  ++ AD + IE RVLA ++G+    +A
Sbjct: 647 ----------------GEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEA 690

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA GEDI+  T ++ F    + V+ E R   KV+   + Y  G    AK           
Sbjct: 691 FAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKA 750

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            +  + +      +F D                       +  S +  ++      AV  
Sbjct: 751 FIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNY 810

Query: 497 KLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            + G+A +++K A           R   + ++Q+  +L        ++      R
Sbjct: 811 PIQGSAADIIKAAMLRVIRRMQQERVASRLIMQVHDELVFEVPEAERDLMEELVR 865



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          +    +++ VHDE+V E P+     +  L  
Sbjct: 812 IQGSAADIIKAAMLRVIRRMQQERVASRLIMQVHDELVFEVPEAERDLMEELVR 865


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/583 (20%), Positives = 211/583 (36%), Gaps = 114/583 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58
            ID+ET S  P  +  V  YA       A      + +   P           +P  L+ 
Sbjct: 317 AIDLETTSLNP-REARVVGYAASCRPHEAWYIPVGHRYLGAP---------EQLPESLVL 366

Query: 59  ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112
                 L+D     +  N  ++  +  +  G ++  +   C ++LA     P+  S    
Sbjct: 367 EILGPLLKDPARRKIGQNLKYDYQVL-RIAGFEL--EGIWCDTMLAAYLVNPARNSQGLD 423

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            LAL + +H        A +AR  K  ++    D  RA         G Y   D +AT  
Sbjct: 424 ALALEYLDHRMI---SYAEVARSGKCELNFSEVDLDRA---------GPYSCEDADATYL 471

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L + L+P          L D E  L  +   +   G ++D+DL+ +L     ++  +L+ 
Sbjct: 472 LHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEA 531

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            I +   G   +      L   LF   G+ +   ++G      +   + +LA++  + RL
Sbjct: 532 QIHEHCGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARL 590

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                +I KL     + L + V+   GR+  +      + TGR S      QN+P +   
Sbjct: 591 LLQYRSISKLKSTYTDALPKLVAPATGRVHTSYN-QAVTSTGRLSSSDPNLQNIPIR--- 646

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                G     +R   IA  G  ++ AD + IE RVLA ++G+ 
Sbjct: 647 ---------------------GEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDR 685

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
              +AFA GEDI+  T ++ F    + V+ E R   KV+   + Y  G    AK      
Sbjct: 686 VLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTP 745

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 +  + +      +F D                       +  S +  ++     
Sbjct: 746 KQAKAFIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQR 805

Query: 492 FAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
            AV   + G+A +++K A           R   + ++Q+  +L
Sbjct: 806 NAVNYPIQGSAADIIKAAMLRVNRRMQEERVASRLIMQVHDEL 848



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          +    +++ VHDE++ E P+     +  L  
Sbjct: 812 IQGSAADIIKAAMLRVNRRMQEERVASRLIMQVHDELIFEVPEGERDLMEELVR 865


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 115/587 (19%), Positives = 211/587 (35%), Gaps = 109/587 (18%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VGV +A AE +A     A+ + D P +L    +++ + + L   L 
Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DRAWVIAQLKPLLE 419

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           DE    V  N  ++  +  +  G+++   R   T + +   N +        LAL F +H
Sbjct: 420 DENKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477

Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                     +GK  +  F +  +                Q   +Y   D + T  L +R
Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520

Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + PL +            E  L  +   I   G  ID  L+    + IA    +L++   
Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       S     L+  LF    + ++  +     S  +   + +LA D  L ++   
Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P        
Sbjct: 639 YRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A +G K++  D + IE R++A ++G+   +
Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AF  G+DI+  T A+    PI++VS EQR   K +   L Y       AK         
Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793

Query: 456 GLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAV 494
              + ++ +         ED     +   +++  +                       A+
Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAEQGYVETIFGRRLHLPEITSRNGMRRKAAERAAI 853

Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534
              + GTA +++KKA        + +  G ++L   + +     V+E
Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEE 900


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 108/590 (18%), Positives = 198/590 (33%), Gaps = 116/590 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++      + KL     + L   ++   R   T      + TGR S      QN+P    
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGRLSSTDPNLQNIP---- 680

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA     +V AD + IE R++A ++ +
Sbjct: 681 --------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD 720

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+     
Sbjct: 721 KGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP 780

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------- 493
                  +  + +       + +  +A++             L++ D             
Sbjct: 781 RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAE 840

Query: 494 ---VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
              +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 841 RAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 199/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GI+
Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLATLKPLLEDDKALKVGQNLKFDQSMLARY-GIE 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LRGIAF-DTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L++ L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F  P++KV+
Sbjct: 694 QAFIAPQGYRIMAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFGLPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 SEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 DQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 109/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIESGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++D                  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIALD----------------EAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 357 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVL 514

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L++   +L      +      L+  LF    +
Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGKPF-NVSSPKQLQTILFEQMKL 573

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 357 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVL 514

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA   ++L++   +L       S     L+  LF    +
Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLEQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 573

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRV 632

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/587 (18%), Positives = 198/587 (33%), Gaps = 110/587 (18%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + +H T   E            I     +    N +   +  G Y   D + T +L  
Sbjct: 463 ERWLKHKTITFE-----------EIAGKGKNPLTFNQIAL-EEAGRYAAEDADVTLQLHL 510

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++ P             + E  L  +   I   G +ID  ++    E +     +L++  
Sbjct: 511 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L ++  
Sbjct: 571 HEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVIL 628

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+  +      + TGR S      QN+P       
Sbjct: 629 EYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 680

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA     +V AD + IE R++A ++ +   
Sbjct: 681 -----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 723

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+        
Sbjct: 724 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 783

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA---------- 493
               +  + +       + +  +A++             L++ D                
Sbjct: 784 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 843

Query: 494 VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
           +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 844 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/585 (17%), Positives = 189/585 (32%), Gaps = 87/585 (14%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAM 53
            + ID ET S       L  + +   A  A      +      +      + D+      
Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMPLGLA 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            S L   L DE+++ +  N  ++  +  +  GI +           A   G      +  
Sbjct: 411 LSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDEL 469

Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDV 167
                        T +  GK+ I  F +  ++           V  + W+LF     R  
Sbjct: 470 CDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVEQAVCYAAEDADVTFRLWKLFKPQLHRAR 528

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T  +++ L      ER L  +   +   G ++D D + ++    AQ+   L+ +I  L
Sbjct: 529 VTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHAL 580

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281
             G   +      L   LF   G+      +           +  LA +       +L+ 
Sbjct: 581 AGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNG-AWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       + L E +    GR+  +    GA+ TGR +      QN+P +       
Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------ 691

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  GK LV  D + IE R+LA IA      +
Sbjct: 692 ------------------EEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQ 733

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T ++ FN P++ +    R   K +   + Y     G A+  +   +   
Sbjct: 734 AFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496
             + ++ +       + D   A +      +                         A+  
Sbjct: 794 GFIDRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINAKGPGAGFARRAAINA 853

Query: 497 KLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
            + GTA +++++A     + +      +   + +     V+E  +
Sbjct: 854 PIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAA 898


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 111/600 (18%), Positives = 200/600 (33%), Gaps = 110/600 (18%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET S       L  +     A +      A+ ++  PV+L    ++  + + L   
Sbjct: 347 AIDTETTSIDYMAAELVGLSFAVEAGKGAYLPVAHDYEGAPVQL----DRDTVLAKLKPL 402

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFS 119
           L D     V  N  ++  +  K  GI +    +  T + +   N          +AL + 
Sbjct: 403 LEDTAPRKVGQNLKYDMSVLAKY-GIALNGIAF-DTMLESYCFNSTAGRHNMDDMALKYL 460

Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
            H T   +   GK    + F +  +                +    Y   D + T  L +
Sbjct: 461 GHKTIHFEDIAGKGAKQKTFNQIPL----------------EEAAPYAAEDADITLRLHQ 504

Query: 176 RLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P               ER L  +   +   G  ID D + +    IA     L++  
Sbjct: 505 HLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLDSLEQQA 564

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++   +  +   T  L+   F   G  ++  +     S      + +LA D  L ++  
Sbjct: 565 HEIAGEVF-NLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEE-VLQELALDYPLPKIIL 622

Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              ++ KL     + L + V   GR+  +      + TGR S      QN+P +      
Sbjct: 623 EHRSLAKLKNTYTDKLPQLVKPSGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRT----- 676

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G KL+  D + IE R++A ++ +   +
Sbjct: 677 -------------------AEGRRIRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDKGLL 717

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AFA G+DI+  T A+ F    D V+ EQR   K +   L Y       AK      +  
Sbjct: 718 EAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIGRAEA 777

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              + ++         + D  +A++H                     +   Q      A+
Sbjct: 778 QEYIDRYFHRYPGVLEYMDRTRAQAHDKEYVETLMGRRLHLPEINARNKMRQQAAERTAI 837

Query: 495 KDKLIGTACELVKKAW-----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
              + GTA +++KKA              +   ++Q+  +L       V E    +   +
Sbjct: 838 NAPMQGTAADIIKKAMLLVADYLSQQAEDEIHLIMQVHDELVFEVREGVAEQHKDALCEL 897



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKN 654
           Q  + DI+ + M            +   +++ VHDE+V E  +         LC LM++ 
Sbjct: 842 QGTAADIIKKAMLLVADYLSQQAEDEIHLIMQVHDELVFEVREGVAEQHKDALCELMSQA 901

Query: 655 PSWAK-GLPLKAEG 667
              A+  +PL AEG
Sbjct: 902 ---AELDVPLLAEG 912


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 199/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S ++  +      A+   + GTA +++KKA          +
Sbjct: 816 QLGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/587 (18%), Positives = 198/587 (33%), Gaps = 110/587 (18%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + +H T   E            I     +    N +   +  G Y   D + T +L  
Sbjct: 463 ERWLKHKTITFE-----------EIAGKGKNPLTFNQIAL-EEAGRYAAEDADVTLQLHL 510

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++ P             + E  L  +   I   G +ID  ++    E +     +L++  
Sbjct: 511 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L ++  
Sbjct: 571 HEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVIL 628

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+  +      + TGR S      QN+P       
Sbjct: 629 EYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 680

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA     +V AD + IE R++A ++ +   
Sbjct: 681 -----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 723

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+        
Sbjct: 724 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 783

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA---------- 493
               +  + +       + +  +A++             L++ D                
Sbjct: 784 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 843

Query: 494 VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
           +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 844 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/585 (17%), Positives = 189/585 (32%), Gaps = 87/585 (14%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAM 53
            + ID ET S       L  + +   A  A      +      +      + D+      
Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMPLGLA 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            S L   L DE+++ +  N  ++  +  +  GI +           A   G      +  
Sbjct: 411 LSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDEL 469

Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDV 167
                        T +  GK+ I  F +  ++           V  + W+LF     R  
Sbjct: 470 CDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVEQAVCYAAEDADVTFRLWKLFKPQLHRAR 528

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T  +++ L      ER L  +   +   G ++D D + ++    AQ+   L+ +I  L
Sbjct: 529 VTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHAL 580

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281
             G   +      L   LF   G+      +           +  LA +       +L+ 
Sbjct: 581 AGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNG-AWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       + L E +    GR+  +    GA+ TGR +      QN+P +       
Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------ 691

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  GK LV  D + IE R+LA IA      +
Sbjct: 692 ------------------EEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQ 733

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T ++ FN P++ +    R   K +   + Y     G A+  +   +   
Sbjct: 734 AFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496
             + ++ +       + D   A +      +                         A+  
Sbjct: 794 GFIDRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINAKGPGAGFARRAAINA 853

Query: 497 KLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
            + GTA +++++A     + +      +   + +     V+E  +
Sbjct: 854 PIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAA 898


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/568 (19%), Positives = 200/568 (35%), Gaps = 101/568 (17%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + GV AY         A+ + D P +L    ++  +   L   L D+    V  N  ++
Sbjct: 375 TEEGVAAY------VPVAHDYLDAPAQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 424

Query: 77  RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
             +  +  GI++   +   T + +   N +        LAL F +H     E        
Sbjct: 425 ASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 475

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184
               I          N ++       Y   D + T  L  RL+              + E
Sbjct: 476 ----IAGKGKKQLTFNQIEL-DEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIE 530

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   I   G  ID   +    + IAQ   +L++   ++ +    +      L+  
Sbjct: 531 VPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLDELEQKAYEIAEQEF-NMNSPKQLQAI 589

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299
           LF   G+ ++  +     S  +   + +LA D  L +L      + KL     + L + +
Sbjct: 590 LFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 648

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 649 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 683

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+   
Sbjct: 684 DEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMG 743

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473
           T ID+VS EQR   K +   L Y       AK            + ++ +         E
Sbjct: 744 TTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNKYFERYPGVMQYME 803

Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510
           D   A +   +++  +                       A+   + GTA +++KKA    
Sbjct: 804 DTRSAAADQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 863

Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQE 534
               +A+ QG ++L   + +     V+E
Sbjct: 864 DEWIQAEGQGRVKLLMQVHDELVFEVEE 891


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQITL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 357 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         Q   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 469 --------------QEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 514

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L++   +L       S     L+  LF    +
Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 573

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/576 (17%), Positives = 199/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE  + V  N  F++ +  +  GI+
Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLATLKPLLEDEKALKVGQNLKFDQSMLARY-GIE 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LRGIAF-DTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EEAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L++ L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F  P++KV+
Sbjct: 694 QAFIAPKGYRIMAADYSQIELRIMAHLSQDEGLLAAFAAGKDIHRATAAEVFGLPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 DQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 874 SEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/583 (19%), Positives = 207/583 (35%), Gaps = 109/583 (18%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VGV +A AE +A     A+ + D P +L    ++  + + L   L 
Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DREWVITQLKPLLE 419

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           DE+   V  N  ++  +  +  G+++   R   T + +   N +        LAL F +H
Sbjct: 420 DESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477

Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                     +GK  +  F +  +                Q   +Y   D + T  L +R
Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520

Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + PL +            E  L  +   I   G  ID  L+    + IA    +L++   
Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       S     L+  LF    + ++  +     S  +   + +LA D  L ++   
Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P        
Sbjct: 639 YRGLAKLKSTYTDKLPKMINPNTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A +G K++  D + IE R++A ++G+   +
Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AF  G+DI+  T A+    PI++VS EQR   K +   L Y       AK         
Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              + ++ +       + +                       +  S +   +      A+
Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAI 853

Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530
              + GTA +++KKA        + +  G ++L   + +    
Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQNILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/552 (18%), Positives = 191/552 (34%), Gaps = 85/552 (15%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D   +  MP D     L   L D +++ +  N  ++  +F +  G+D+           A
Sbjct: 395 DALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY-GVDVAPIDDTMLMSYA 453

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQ 154
              G      +                 +  GK+ I  F K  ID    Y    A+  ++
Sbjct: 454 MHAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAIT-FDKVPIDEATAYAAEDADITLR 512

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            W+LF     R V+ T  +++ L      ER L  +   +   G ++D D++ ++    A
Sbjct: 513 LWKLFKPQLHR-VQVTT-VYETL------ERPLVPVLAQMEMHGIKVDRDVLSRMSNAFA 564

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           Q+   L+ +I +L      +      L   LF             T K       +  LA
Sbjct: 565 QKMAALEAEIHELAGETF-NVGSPAQLGEILFEKM-GLEGGKKGKTGKYSTGADVLEDLA 622

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  L R       + KL     + L   ++ D GR+  +    GA+ TGR +      Q
Sbjct: 623 TEHELPRKVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYAITGAN-TGRLASTDPNLQ 681

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +R   +A  G  LV  D + IE R+
Sbjct: 682 NIPVRT------------------------EEGRRIREAFVAEPGNVLVSLDYSQIELRI 717

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           LA IA      +AFA+G DI+  T ++ F+ P+D+++ E R   K +   + Y     G 
Sbjct: 718 LAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAINFGVIYGISGFGL 777

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------- 488
           A+  +   +     + ++ +       + D   A +                        
Sbjct: 778 ARNLRIPRAEAQGFIDRYFERFPGIRRYMDDTIAFAKEHGYVQTLFGRKIHTPEINAKGP 837

Query: 489 ----YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISA 540
                   A+   + GTA +++++A     + +     ++   + +     V E      
Sbjct: 838 HAGFARRAAINAPIQGTAADVIRRAMVRMPEAIDGLPAKMLLQVHDELLFEVAEDA---V 894

Query: 541 RRVANVPRLVMR 552
            +   + R VM 
Sbjct: 895 DQTIEIARDVME 906



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
           +Q  + D++   M             ++L VHDE++ E  +        +   +M   P 
Sbjct: 851 IQGTAADVIRRAMVRMPEAIDGLPAKMLLQVHDELLFEVAEDAVDQTIEIARDVMENAPD 910


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/550 (18%), Positives = 197/550 (35%), Gaps = 88/550 (16%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D   +  +P D     L   L D  V+ +  N  ++  +F   LG+ I           A
Sbjct: 395 DALAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKIFA-GLGLTIAPIDDTMLMSYA 453

Query: 101 RTNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSIDS-PPYDCTRAN-HV 153
             +G+ +      L+  +  H      T +  GK+ +  F K  ID    Y    A+  +
Sbjct: 454 LNSGIHNH-GMDALSERYLAHNPIPIKTLLGTGKSAVT-FDKVPIDEAVKYAAEDADITL 511

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           + W +F     +    T  +++ L      ER L  +   +   G  +D D++ ++    
Sbjct: 512 RLWHMFKPQLHQKQVTT--VYETL------ERPLVPVLARMERHGILVDRDVLSRMSNAF 563

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           AQ+   L+ +I +L      +      L   LF    ++     + T         +  L
Sbjct: 564 AQKMGGLEAEIHELAGRSF-NVGSPKQLGEILFDEMALEGGKKGK-TGAYATGADVLEDL 621

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
           A +  L         + KL     + L + +    GR+  +    GAS TGR +      
Sbjct: 622 ATEHELPARVLDWRQLSKLKSTYTDALQDHIDPNTGRVHTSYVQTGAS-TGRLASTDPNL 680

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   +A  GK+LV  D + IE R
Sbjct: 681 QNIPVRS------------------------EEGRRIREAFVADAGKRLVSLDYSQIELR 716

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443
           +LA +AG D   +AF +G DI+  T ++ F  P+D+++ + R   K +   + Y     G
Sbjct: 717 ILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYGISGFG 776

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY------------- 489
            A+  +   +     + ++ +       + D     +  H ++Q  +             
Sbjct: 777 LARNLRIPRAEAQGFIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHTPEIAAKG 836

Query: 490 ------PEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEG 535
                    A+   + GTA +++++A     + +        LQ+  +L         + 
Sbjct: 837 PRAGFAKRAAINAPIQGTAADIIRRAMIRMPEAIADLPCKMLLQVHDELLFEAEEDAVDA 896

Query: 536 GSISARRVAN 545
              +AR V  
Sbjct: 897 VITAAREVME 906


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 201/591 (34%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           ++GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIELGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLQYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++            
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
          Length = 928

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++            
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 904


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 904


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 197/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L++ L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++KV+
Sbjct: 694 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 197/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L++ L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++KV+
Sbjct: 694 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQSYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533
               +   + GTA +++K+      AW    Q  +++   + +     V 
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 904


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 111/614 (18%), Positives = 212/614 (34%), Gaps = 119/614 (19%)

Query: 5   FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            +D ET S   L           + G+ AY         A+ + D P +L     +  + 
Sbjct: 352 AVDTETDSLDNLTANLVGISFATEPGLAAY------IPVAHDYLDAPDQL----SRDRVL 401

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNAC 113
             L   L DE+++ V  N  F+R + +   GI++    +  T + +     +        
Sbjct: 402 ELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVSGRHDMDS 459

Query: 114 LALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           L+  + +H T   E   GK      F +  +                +  G Y   D + 
Sbjct: 460 LSSRWLKHTTITFEQIAGKGKNQLTFNQIDL----------------EQAGRYAAEDADV 503

Query: 170 TRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    + IA +  
Sbjct: 504 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLT 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  
Sbjct: 564 ELEQKAHEIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYP 621

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L ++      + KL     + L + ++   GR+  +      + TGR S      QN+P 
Sbjct: 622 LPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP- 679

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA     +V AD + IE R++A +
Sbjct: 680 -----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 716

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448
           + +   + AFA G+DI+  T A+ F  P++ VS EQR   K +   L Y   A    +  
Sbjct: 717 SRDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQL 776

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------- 489
                     +  + +       + +  + ++      +                     
Sbjct: 777 NIPRKESQKYMDLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRA 836

Query: 490 --PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVV-QEGGSISA 540
                A+   + GTA +++K+A      W  K Q  +++   + +     V ++     +
Sbjct: 837 GAERAAINAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVFEVHKDDVEAVS 896

Query: 541 RRVANVPRLVMRRH 554
           +++  +    M+  
Sbjct: 897 QKIHELMENSMQLD 910



 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E       +V   +  LM
Sbjct: 848 QGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELM 903


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533
               +   + GTA +++K+      AW    Q  +++   + +     V 
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 904


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 904


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533
               +   + GTA +++K+      AW    Q  +++   + +     V 
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 904


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 357 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 514

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 573

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLGYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/585 (16%), Positives = 189/585 (32%), Gaps = 87/585 (14%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAM 53
            + ID ET S       L  + +   A  A      +      +      + D+      
Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMPLGLA 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            S L   L DE+++ +  N  ++  +  +  GI +           A   G      +  
Sbjct: 411 LSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDEL 469

Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDV 167
                        T +  GK+ I  F +  ++           V  + W+LF     R  
Sbjct: 470 CDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVEQAVCYAAEDADVTFRLWKLFKPQLHRAR 528

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T  +++ L      ER L  +   +   G ++D D + ++    AQ+   L+ +I  L
Sbjct: 529 VTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHAL 580

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281
             G   +      L   LF   G+      +           +  LA +       +L+ 
Sbjct: 581 AGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNG-AWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       + L E +    GR+  +    GA+ TGR +      QN+P +       
Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------ 691

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  GK LV  D + IE R+LA IA      +
Sbjct: 692 ------------------EEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQ 733

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T ++ FN P++ +    R   K +   + Y     G A+  +   +   
Sbjct: 734 AFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496
             + ++ +       + D   + +      +                         A+  
Sbjct: 794 GFIDRYFERFPGIRGYMDETISFAKANGHVETLFGRRINTPEINAKGPGAGFARRAAINA 853

Query: 497 KLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
            + GTA +++++A     + +      +   + +     V+E  +
Sbjct: 854 PIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAA 898


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 385 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 194/576 (33%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  +   L   L DE  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPAQL----DRQWVLDTLKPLLEDEKALKVGQNLKFDQSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             D E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQDIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +A    +L++   +L       +     L++ L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELAIRLDELEKQAHELAGEPFNLA-SPKQLQVILYEKQQL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVIIEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+
Sbjct: 694 QAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------ 475
            EQR   K +   L Y       A+            +  + +       + +       
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 476 ---------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              S +   +      A+   + GTA +++K+A  A        
Sbjct: 814 DQGYVTTLDGRRLYLPDINSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 874 SAPLVRVIMQVHDELVFEVHETVLESAEQKIRELME 909


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 109/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     KL
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAKL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 195/572 (34%), Gaps = 103/572 (18%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ + D P +L    ++  +   L   L D+T   V  N  ++  +
Sbjct: 380 GVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDTQAKVGQNLKYDASV 429

Query: 80  FKKTLGIDIPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
             +    DI  K     T + +   N +        LAL F +H     E          
Sbjct: 430 LARY---DIELKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ--------- 477

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERD 186
             I          N ++       Y   D + T  L  RL+              D E  
Sbjct: 478 --IAGKGKKQLTFNQIEL-DEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQDIEVP 534

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   I   G  ID   +    + IAQ   +L++   ++ +    +      L+  LF
Sbjct: 535 LVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQKAYEIAEQEF-NMNSPKQLQALLF 593

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS- 300
              G+ ++  +     S  +   + +LA D  L +L      + KL     + L + ++ 
Sbjct: 594 EKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINS 652

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
             GR+  +      + TGR S      QN+P +                           
Sbjct: 653 ETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEE 687

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+   T 
Sbjct: 688 GRRIRQAFVAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTT 747

Query: 421 IDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDW 475
           ID+VS EQR   K +   L Y       AK            + ++ +         ED 
Sbjct: 748 IDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNKYFERYPGVMQYMEDT 807

Query: 476 EQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ 515
             A +   +++  +                       A+   + GTA +++KKA     Q
Sbjct: 808 RSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQ 867

Query: 516 -------GVLQLWKDLTEGFACVVQEGGSISA 540
                  G ++L   + +     VQE      
Sbjct: 868 WIQAEGDGRVKLLMQVHDELVFEVQESALTEI 899


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 111/614 (18%), Positives = 212/614 (34%), Gaps = 119/614 (19%)

Query: 5   FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            +D ET S   L           + G+ AY         A+ + D P +L     +  + 
Sbjct: 391 AVDTETDSLDNLTANLVGISFATEPGLAAY------IPVAHDYLDAPDQLP----RDRVL 440

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNAC 113
             L   L DE+++ V  N  F+R + +   GI++    +  T + +     +        
Sbjct: 441 ELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIVF-DTMLESYILDSVSGRHDMDS 498

Query: 114 LALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           L+  + +H T   E   GK      F +  +                +  G Y   D + 
Sbjct: 499 LSSRWLKHTTITFEQIAGKGKNQLTFNQIDL----------------EQAGRYAAEDADV 542

Query: 170 TRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    + IA +  
Sbjct: 543 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLA 602

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  
Sbjct: 603 ELEQKAHEIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYP 660

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L ++      + KL     + L + ++   GR+  +      + TGR S      QN+P 
Sbjct: 661 LPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP- 718

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA     +V AD + IE R++A +
Sbjct: 719 -----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 755

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448
           + +   + AFA G+DI+  T A+ F  P++ VS EQR   K +   L Y   A    +  
Sbjct: 756 SRDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQL 815

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------- 489
                     +  + +       + +  + ++      +                     
Sbjct: 816 NIPRKESQKYMDLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRA 875

Query: 490 --PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVV-QEGGSISA 540
                A+   + GTA +++K+A      W  K Q  +++   + +     V ++     +
Sbjct: 876 GAERAAINAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVFEVHKDDVEAVS 935

Query: 541 RRVANVPRLVMRRH 554
           +++  +    M+  
Sbjct: 936 QKIHELMENSMQLD 949



 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E       +V   +  LM
Sbjct: 887 QGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELM 942


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 302 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 356

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 357 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 413

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 414 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 459

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 460 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 518

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 519 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 577

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 578 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 612

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 613 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 672

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 673 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 732

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 733 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 792

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 793 GDGRVKLLMQVHDELVFEVKE 813


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/574 (18%), Positives = 198/574 (34%), Gaps = 101/574 (17%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + GV AY         A+ + D P +L    E+  +   L   L D+    V  N  ++
Sbjct: 377 TEEGVAAY------VPVAHDYLDAPAQL----ERDWVLEQLKPILEDDAQAKVGQNLKYD 426

Query: 77  RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
             +  +  GI++   +   T + +   N +        LAL F +H     E        
Sbjct: 427 ASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 477

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184
               I          N ++       Y   D + T  L  RL+              + E
Sbjct: 478 ----IAGKGKKQLTFNQIEL-DEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIE 532

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   I   G  ID   +    + IAQ   +L++   ++ +    +      L+  
Sbjct: 533 VPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLDELEQQAYEIAEQEF-NMNSPKQLQAL 591

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299
           LF   G+ ++  +     S  +   + +LA D  L +L      + KL     + L + +
Sbjct: 592 LFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 650

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 651 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 685

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   IA +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+   
Sbjct: 686 EEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIMG 745

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           T ID+VS EQR   K +   L Y       AK            + ++ +       + +
Sbjct: 746 TTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNKYFERYPGVMQYME 805

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW--- 510
                                  + +S +   +      A+   + GTA +++KKA    
Sbjct: 806 DTRSTASEQGYVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 865

Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
               + +  G ++L   + +     VQE      
Sbjct: 866 DEWIQTEGDGRVKLLMQVHDELVFEVQESALTEI 899


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 343 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 392

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 393 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 450

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 451 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 494

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 495 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 554

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 555 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 612

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 613 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 668

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 669 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 707

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 708 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 767

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 768 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 827

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533
               +   + GTA +++K+      AW    Q  +++   + +     V 
Sbjct: 828 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 877



 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 837 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 892


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 107/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + +++      T                 D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAT----------------EDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 107/604 (17%), Positives = 206/604 (34%), Gaps = 119/604 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP----SDLLQYL 61
           ID ET S   +           A I   + A ++        T     P     ++L  L
Sbjct: 323 IDTETTSLDVMM----------AEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTAL 372

Query: 62  ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLAL 116
                + T+  +  N  ++  + +   GI +    +  T + +              LAL
Sbjct: 373 NPILENPTIKKIGQNLKYDYSVLRNH-GITLKGI-YYDTMLESYVLNSGSGRHDMDSLAL 430

Query: 117 NFSEHLTKMEE---GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   E   GK     RF +  ++                  G Y   D + T +
Sbjct: 431 KYLGHKTISYEEIAGKGAKQLRFDQIPVEKA----------------GAYAAEDADITLQ 474

Query: 173 LFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L  +L PL          + E  L  +   +   G  ID   + +  E + +  + L+E+
Sbjct: 475 LHHKLYPLIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEEE 534

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            + L      +      L+  LF    + ++  +  T +   + + + +LA D  L  + 
Sbjct: 535 ALHLAGKPF-NLNSPKQLQEILFDSHKLPIIAKTP-TGQPSTAEAVLQELAYDYRLAAVI 592

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L + ++    R+  +      + TGR S      QN+P +    
Sbjct: 593 LEYRSLTKLVSTYIDALPKKINPKTNRVHTSYN-QAVTATGRLSSSEPNLQNIPIRS--- 648

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  IA     ++ AD + IE R++A ++ ++ 
Sbjct: 649 ---------------------EEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDEN 687

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFANG D++  T ++ F  P+++++ EQR   K +   L Y       AK       
Sbjct: 688 LLKAFANGWDVHAATASEIFQIPLEEINNEQRRRAKAINFGLIYGMSSFGLAKQIGVERQ 747

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEF 492
                +  + Q       + +  + ++HH                     L  Q      
Sbjct: 748 DAQYYIDTYFQRYPKVLEYMNRTRQQAHHQGYVETLFGRRLYLPEINARNLMRQKAAERT 807

Query: 493 AVKDKLIGTACELVKKA------WRAKHQG-----VLQLWKDLTEGFACVVQEGGSISAR 541
           A+   + GTA +++K A      W+  H+      ++Q+  +L         E      R
Sbjct: 808 AINAPMQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELVFEVNKNAIESSKEMIR 867

Query: 542 RVAN 545
            +  
Sbjct: 868 ELME 871



 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           Q  + DI+   M           K    +++ VHDE+V E       S   +   LM
Sbjct: 814 QGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELVFEVNKNAIESSKEMIRELM 870


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 117/623 (18%), Positives = 226/623 (36%), Gaps = 116/623 (18%)

Query: 5   FIDIETRS--PQPLPKVGV-WAYAEQ--------AVITLCAYAWDDEPVKLWDRTEQSAM 53
            ID ET S        VGV +AYAE+        A      + +D  P +L        +
Sbjct: 356 AIDTETTSLNAMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPEQLPI----QEV 411

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNA 112
            + L   L +  +  V  N  ++  +FK   GI++    +  T + +   N + +     
Sbjct: 412 LAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAY-DTMLESYCFNSVATRHNMD 469

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   K   G     + F +  +++                   Y   D +
Sbjct: 470 DLALTYLNHSTIHFKDIAGTGKKQKTFNQIELETA----------------SPYAAEDAD 513

Query: 169 ATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L+P             + E  L  +   +   G  ID  ++      + Q+ 
Sbjct: 514 ITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSYELGQKL 573

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD- 276
            +L++    +      +   +  L+  LF    + +V  +     S  +   + QLA+D 
Sbjct: 574 TELEQKAHLIAGTPF-NLNSSKQLQEVLFERLELPIVKKTPKGQPST-AEPVLVQLAEDG 631

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  L     ++ KL     ++L + ++   GR+  + Q    + TGR S      QN+
Sbjct: 632 HEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQ-QAVASTGRLSSTEPNLQNI 690

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   IA  G +L+ +D + IE R++A
Sbjct: 691 PIRS------------------------AEGRRIRQAFIAQPGYRLMASDYSQIELRIMA 726

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            ++G+   +KAFA G+DI+  T A+ FN P+++V+ EQR   K +   L Y       AK
Sbjct: 727 HLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAFGLAK 786

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485
                       +  +       + + +                          + +  +
Sbjct: 787 QLNISRGLAQEYINLYFARYPGVANYMESTKENAKQTGYVETLMGRRLYLPDINAKNGQL 846

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +      A+   + GTA +++K A        +Q W D T    C ++    +    V  
Sbjct: 847 RQYAERTAINAPMQGTAADIIKTAMVK-----MQQWLDQT---PCDIKMLMQVHDELVFE 898

Query: 546 VPRLVMRRHKRDVHIVLPSSRRL 568
           V    M + ++++  ++ ++ +L
Sbjct: 899 VAEADMDQARKEIKTIMEAALKL 921



 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKN----ATKNGYDI--VLT 627
           G   YL    ++  + R Y  +   N  +Q  + DI+   M        +   DI  ++ 
Sbjct: 831 GRRLYLPDINAKNGQLRQYAERTAINAPMQGTAADIIKTAMVKMQQWLDQTPCDIKMLMQ 890

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLM 651
           VHDE+V E  +         + ++M
Sbjct: 891 VHDELVFEVAEADMDQARKEIKTIM 915


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 357 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 514

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L+++  +L       S     L+  LF    +
Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 573

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 93/523 (17%), Positives = 184/523 (35%), Gaps = 78/523 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L+D  V+ +  N  ++  +F + L ID+           A   G  +   +     
Sbjct: 411 LKPVLQDPAVIKIGQNMKYDAKIFAR-LDIDVAPIDDTMLMSYAMNAGKHNHGMDTLSER 469

Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
                       +  GK+ I        D+  Y    A+  ++ WQ F      +   T 
Sbjct: 470 YLGHTPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADITLRLWQQFKPQLHMNRVTT- 528

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +++ +      ER L  +   +   G ++D D + ++    AQ+   L+++I ++    
Sbjct: 529 -VYETM------ERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQKMAGLEDEIQEMAGRP 581

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287
             +      L   LF   G+++ D  +     T         +  LA    + R      
Sbjct: 582 F-NVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGADVLEDLATLHDMPRRILDWR 640

Query: 288 AILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L E ++   GR+  +    GA+ TGR +      QN+P +        
Sbjct: 641 QLSKLKSTYTDALQEHINAETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------- 692

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A +GK +V  D + IE R+LA IAG D   +A
Sbjct: 693 -----------------EEGRRIREAFVAEDGKVIVSLDYSQIELRILAHIAGIDALKQA 735

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +G DI+  T ++ F+ P+D+++ + R   K +   + Y     G A+  +        
Sbjct: 736 FLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRGEAQG 795

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDK 497
            + ++ +       + D   A +                                A+   
Sbjct: 796 FIDRYFERFPGIRKYMDDTVAFAKENSYVQTLFGRKINTPEINAKGPHAGFAKRAAINAP 855

Query: 498 LIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGG 536
           + GTA +++++A       +     ++   + +     V+EG 
Sbjct: 856 IQGTAADVIRRAMIRMPDAIAGLPAKMLLQVHDELIFEVEEGA 898


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 107/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L +E  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 192/568 (33%), Gaps = 108/568 (19%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ +   P ++     +      L   L DE  + V  N  ++R +
Sbjct: 378 GVAAY------VPVAHDYIGAPEQI----SRERALELLKPLLEDEKALKVGQNLKYDRGI 427

Query: 80  FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134
                GI++    W  T + + T   +        L+  + +H T   E   GK      
Sbjct: 428 LANY-GIELRGIAW-DTMLESYTLDSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLT 485

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------G 183
           F +  +                +  G Y   D + T +L  ++ P               
Sbjct: 486 FNQIDL----------------EQAGRYAAEDADVTLQLHLKMWPKLQKREGPLNVFRNI 529

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   I   G +ID  ++ K  E I     +L++    +       S  T  L+ 
Sbjct: 530 EMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLAELEQKAHDIAGEPFNLS-STKQLQT 588

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298
            LF   GI  +  + G   S  S   + +LA D  L ++      + KL     + L   
Sbjct: 589 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 647

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++   GR+  +      + TGR S      QN+P                          
Sbjct: 648 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 682

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA     +V AD + IE R++A ++ +   +KAFA G+DI+  T A+ F
Sbjct: 683 NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLKAFAEGKDIHRATAAEVF 742

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P++ VS EQR   K +   L Y   A    +            +  + +       + 
Sbjct: 743 GLPLESVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYMDLYFERYPGVLEYM 802

Query: 474 DWEQAESHHLWMQDQYP---------------------EFAVKDKLIGTACELVKK---- 508
           +  +A++      +                          A+   + GTA +++K+    
Sbjct: 803 ERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAAAERAAINAPMQGTAADIIKRAMIA 862

Query: 509 --AWRAKHQGVLQLWKDLTEGFACVVQE 534
             AW  + Q  +++   + +     V +
Sbjct: 863 VDAWLQEEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELVFEVHKDALDAVSKKIHELM 904


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D   T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDANVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 106/583 (18%), Positives = 200/583 (34%), Gaps = 109/583 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAV----ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    V      A         A+ + D P +L    ++  + + L   L 
Sbjct: 364 DTETDSLDYMVANLVGVSCAVAEGEAAYIPVAHDYLDAPQQL----DREWVIAQLKPLLE 419

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           DE+   V  N  ++  +  +  G+++   R   T + +   N +        LAL F +H
Sbjct: 420 DESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477

Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                     +GK  +  F +  +                Q   +Y   D + T  L +R
Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520

Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + PL +            E  L  +   I   G  I+  L+    + IA    +L++   
Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLDELEKKAY 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       S     L+  LF    + ++  +     S  +   + +LA D  L ++   
Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P        
Sbjct: 639 YRGLAKLKSTYTDKLPKMINPNTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A +G K++  D + IE R++A ++G+   +
Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AF  G+DI+  T A+    PI++VS EQR   K +   L Y       AK         
Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              + ++ +       + +                       +  S +   +      A+
Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGMRRKAAERAAI 853

Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530
              + GTA +++KKA        + +  G ++L   + +    
Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 113/583 (19%), Positives = 209/583 (35%), Gaps = 109/583 (18%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VGV +A AE +A     A+ + D P +L    +++ + + L   L 
Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DRAWVIAQLKPLLE 419

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           DE+   V  N  ++  +  +  G+++   R   T + +   N +        LAL F +H
Sbjct: 420 DESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477

Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                     +GK  +  F +  +                Q   +Y   D + T  L +R
Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520

Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + PL +            E  L  +   I   G  ID  L+    + IA    +L++   
Sbjct: 521 ISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       S     L+  LF    + ++  +     S  +   + +LA D  L ++   
Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P        
Sbjct: 639 YRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A +G K++  D + IE R++A ++G+   +
Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AF  G+DI+  T A+    PI++VS EQR   K +   L Y       AK         
Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793

Query: 456 GLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAV 494
              + ++ +         ED     +   +++  +                       A+
Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGIRRKAAERAAI 853

Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530
              + GTA +++KKA        + +  G ++L   + +    
Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 105/557 (18%), Positives = 198/557 (35%), Gaps = 95/557 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 337 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 391

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +   R   T + +   N +        LAL F +H     E  A   +  + + +     
Sbjct: 392 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGK-NQLTFNQI--- 446

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195
                   A +   +Y   D + T  L +R+ PL +            E  L  +   I 
Sbjct: 447 --------ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIE 498

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  ID  L+    + IA    +L+++  +L       S     L+  LF    + ++ 
Sbjct: 499 RTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKLPVLQ 557

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309
            +     S  +   + +LA D  L ++      + KL     + L + ++   GR+  + 
Sbjct: 558 KTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 616

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   +
Sbjct: 617 -HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFV 651

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS EQR
Sbjct: 652 APHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQR 711

Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K +   L Y       AK            + ++ +       + +           
Sbjct: 712 RRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGY 771

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGV 517
                       +  S +   +      A+   + GTA +++KKA          +  G 
Sbjct: 772 VETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGR 831

Query: 518 LQLWKDLTEGFACVVQE 534
           ++L   + +     V+E
Sbjct: 832 VKLLMQVHDELVFEVKE 848


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 105/557 (18%), Positives = 198/557 (35%), Gaps = 95/557 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E+  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 341 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 395

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +   R   T + +   N +        LAL F +H     E  A   +  + + +     
Sbjct: 396 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGK-NQLTFNQI--- 450

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195
                   A +   +Y   D + T  L +R+ PL +            E  L  +   I 
Sbjct: 451 --------ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIE 502

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  ID  L+    + IA    +L+++  +L       S     L+  LF    + ++ 
Sbjct: 503 RTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKLPVLQ 561

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309
            +     S  +   + +LA D  L ++      + KL     + L + ++   GR+  + 
Sbjct: 562 KTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 620

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   +
Sbjct: 621 -HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFV 655

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS EQR
Sbjct: 656 APHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQR 715

Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K +   L Y       AK            + ++ +       + +           
Sbjct: 716 RRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGY 775

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGV 517
                       +  S +   +      A+   + GTA +++KKA          +  G 
Sbjct: 776 VETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGR 835

Query: 518 LQLWKDLTEGFACVVQE 534
           ++L   + +     V+E
Sbjct: 836 VKLLMQVHDELVFEVKE 852


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 102/596 (17%), Positives = 202/596 (33%), Gaps = 100/596 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  +     A  A      + +   P +L    ++ A+ + L   L 
Sbjct: 354 DTETDSLDTLTANLVGMSFAITAGDAAYLPLGHDYLGAPEQL----DRDAVLAALKPLLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  ++ +  N  F+  +  +  GI++    +  T + +      + +    +      HL
Sbjct: 410 DSNLLKIGQNIKFDCGVLVRY-GIELQGIAY-DTMLESYVLNSVAGMGRHDMDSLAERHL 467

Query: 123 TKMEEGKALIARFCKG--SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
                    IA   K   + +  P            +    Y   D + T +L + + P 
Sbjct: 468 NYKTTTFEEIAGKGKNQLTFNQVPV-----------EQAAMYAAEDADVTLQLHQVIWPQ 516

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  L ++   +   G  I+ D++ +  + IA    +L+++  +L  
Sbjct: 517 LEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVRLDELEKEAHELAG 576

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +   +     L+  LF    + +V  + G   S  +   + +L     L ++      +
Sbjct: 577 EVFNLA-SPKQLQTILFEKLNLPVVKKTPGGAPST-NEEVLEELVDHHELPKVILEHRGL 634

Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            KL     + L + V    +   T      + TGR S      QN+P             
Sbjct: 635 AKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIP------------- 681

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IAS G +++ AD + IE R++A ++ +   +KAFA 
Sbjct: 682 -----------VRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAE 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
           G+DI+  T A+ F+ P+++V+ EQR   K +   L Y   A    +            + 
Sbjct: 731 GQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYMD 790

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                         +S +   +      A+   + 
Sbjct: 791 LYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYLPDIKSRNGTRRKAAEREAINAPMQ 850

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           GTA +++KKA  A          K + ++Q+  +L         E      R +  
Sbjct: 851 GTAADIIKKAMIAVDDWIISEAPKVRMIMQVHDELVFEVHESELENTEQKIRELME 906


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + G A +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 381 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 435

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 436 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 492

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 493 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVL 538

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L++   +L       S     L+  LF    +
Sbjct: 539 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 597

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 598 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRV 656

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 657 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 691

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 692 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 751

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 752 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 811

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 812 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 871

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 872 GDGRVKLLMQVHDELVFEVKE 892


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 112/583 (19%), Positives = 207/583 (35%), Gaps = 109/583 (18%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VGV +A AE +A     A+ + D P +L    ++  + + L   L 
Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DRDWVIAQLKPLLE 419

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           DE+   V  N  ++  +  +  G+++   R   T + +   N +        LAL F +H
Sbjct: 420 DESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477

Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                     +GK  +  F +  +                Q   +Y   D + T  L +R
Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520

Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + PL +            E  L  +   I   G  ID  L+    + IA    +L++   
Sbjct: 521 ISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       S     L+  LF    + ++  +     S  +   + +LA D  L ++   
Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P        
Sbjct: 639 YRGLAKLKSTYTDKLPKMINPNTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A +G K++  D + IE R++A ++G+   +
Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AF  G+DI+  T A+    PI++VS EQR   K +   L Y       AK         
Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              + ++ +       + +                       +  S +   +      A+
Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAI 853

Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530
              + GTA +++KKA        + +  G ++L   + +    
Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 385 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +   R   T + +   N +        LAL F +H     E   GK      F + ++  
Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +   +Y   D + T  L +R+ PL +            E  L  + 
Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVL 542

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  L+    + IA    +L++   +L       S     L+  LF    +
Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 601

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR+
Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRV 660

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    PID+VS
Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK            + ++ +       + +       
Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           +  S +   +      A+   + GTA +++KKA          +
Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
             G ++L   + +     V+E
Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 99/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GI+
Sbjct: 383 AAYLPLAHDYLDSPAQL----DRDWVLATLKPLLEDDKALKVGQNLKFDQSMLARY-GIE 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F TP++KV+
Sbjct: 694 QAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGTPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLSIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 DQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 109/569 (19%), Positives = 195/569 (34%), Gaps = 95/569 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D     +  N  ++  +  +  GI+
Sbjct: 374 AAYVPVAHDYLDAPEQL----DRDWVLAQLKPLLEDPNQAKIGQNLKYDASVIARY-GIE 428

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +   ++  T + +   N +        LAL + EH     E    IA   KG +     D
Sbjct: 429 MQGIKY-DTMLESYVYNSVVGRHDMDSLALRYLEHKNISFE---EIAGKGKGQLTFNQID 484

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTIN 195
                     +  G Y   D + T  L   L P            SD E  L  +   + 
Sbjct: 485 ---------LEQAGPYAAEDADITLRLHNALYPKVSADEKLLHVFSDIEMPLVPVLSRME 535

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  ID   +    + IAQ   +L++   ++ D     S     L+  LF   G+ ++ 
Sbjct: 536 RTGVLIDSMKLSAQSQEIAQRLDELEKRAFEIADQEFNLS-SPKQLQAILFEKMGLPVLK 594

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309
            +     S  +   + +LA D  L +L      + KL     + L + V+   GR+  + 
Sbjct: 595 KTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSY 653

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   I
Sbjct: 654 -HQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIRQAFI 688

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    P+D+VS EQR
Sbjct: 689 APQGYKVLAIDYSQIELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLPLDQVSSEQR 748

Query: 430 AIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTFEDW---------- 475
              K +   L Y   A                 +  + +       + +           
Sbjct: 749 RRAKAINFGLIYGMSAFGLAKQLDMGRGEAQEYMNTYFERYPGVLEYMETTRTVASEQGY 808

Query: 476 -----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR-------AKHQGV 517
                         +S +   +      A+   + GTA +++K+A          +  G 
Sbjct: 809 VETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKRAMVLVDEWIGQQESGR 868

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANV 546
           ++L   + +     VQE    S  +    
Sbjct: 869 VRLLMQVHDELVFEVQESEIESVAQEIKT 897


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 110/574 (19%), Positives = 199/574 (34%), Gaps = 101/574 (17%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + GV AY         A+ + D P +L    ++  + + L   L D+T   V  N  ++
Sbjct: 377 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLAQLKPILEDDTQAKVGQNLKYD 426

Query: 77  RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
             +  +   I++   +   T + +   N +        LAL F +H     E        
Sbjct: 427 ASVLARY-NIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 477

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184
               I          N ++       Y   D + T  L  RL+              + E
Sbjct: 478 ----IAGKGKKQLTFNQIEL-DQASPYAAEDADVTLRLHNRLMANIEKDEQLKAIYEEIE 532

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   I   G  ID   +    + IAQ   +L++   ++ +    +      L+  
Sbjct: 533 VPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQKAYEIAEQEF-NMNSPKQLQAL 591

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299
           LF   G+ ++  +     S  +   + +LA D  L +L      + KL     + L + +
Sbjct: 592 LFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 650

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 651 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 685

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+   
Sbjct: 686 DEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIMG 745

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473
           T ID+VS EQR   K +   L Y       AK            +  + +         E
Sbjct: 746 TTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNTYFERYPGVMQYME 805

Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510
           D   A +   +++  +                       A+   + GTA +++KKA    
Sbjct: 806 DTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 865

Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
               +A+  G ++L   + +     VQE      
Sbjct: 866 DEWIQAEGDGRVKLLMQVHDELVFEVQESALTEI 899


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 198/577 (34%), Gaps = 109/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +    D
Sbjct: 383 AAYLPVAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY---D 435

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I  +     ++L     N +        LA  +  H T   E   GK      F + ++ 
Sbjct: 436 INLRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL- 494

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                          +  G Y   D + T +L   L P             + E  L  +
Sbjct: 495 ---------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKQVFQEIEMPLLPV 539

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID +++    + +     +L++   +L +     +     L++ L+    
Sbjct: 540 LSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQK 598

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + ++  + G   S  +   + +LA D  L ++      + KL     + L   +S   GR
Sbjct: 599 LPILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMISPVSGR 657

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P                                +
Sbjct: 658 VHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRI 692

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++KV
Sbjct: 693 RQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEKV 752

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           + EQR   K +   L Y       A+            +  + +       + +  + ++
Sbjct: 753 THEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQA 812

Query: 481 ---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA------- 512
                                 +   +      A+   + GTA +++K+A  A       
Sbjct: 813 ADQGYVTTLDGRRLYLPEIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQ 872

Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
               K + ++Q+  +L       V E      R +  
Sbjct: 873 EPEPKVRVIMQVHDELVFEVHESVLESTEQKVRELME 909


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 106/597 (17%), Positives = 198/597 (33%), Gaps = 90/597 (15%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56
            +D ET S       L  + +   A  A      +      +       +  MP      
Sbjct: 352 AVDTETTSLDEMRAELVGISLCVQAGTACYIPLGHRQGGGDLFGSSALTEGQMPVAQALA 411

Query: 57  -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L D+ ++ +  N  ++  +  + LGI +           A   GL S   +A   
Sbjct: 412 LLKPVLEDDAILKIGQNMKYDAKILAR-LGISVAPIDDTMLMSYAMHAGLNSHGMDALSD 470

Query: 116 LNFSEH----LTKMEEGKALIARFCKGSIDS-PPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
                        +  GK+ +  F +  ID    Y    A+  ++ W+LF     R    
Sbjct: 471 QYLGHQPIAIKPLLGSGKSAVT-FDRVPIDQAVAYAAEDADITLRLWELFKPQLHR-AHV 528

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T  +++ L      ER L  +   +   G ++D D + ++    AQ+   L+ +I  +  
Sbjct: 529 TT-VYETL------ERPLVPVLAQMEMAGIQVDRDTLSRMSNAFAQKMAGLEAEIHDMAG 581

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF    +   +  + T         +  LA +  L         +
Sbjct: 582 EKF-NVGSPKQLGEILFDKMSLPGGEKGK-TGAYATGADVLEDLATEHELPGRVLDWRQL 639

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + ++   GR+  +    GA  TGR +      QN+P +          
Sbjct: 640 SKLKSTYTDALQDHINPETGRVHTSYSLTGAV-TGRLASTDPNLQNIPVRS--------- 689

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G++LV  D + IE R+LA +A      +AF 
Sbjct: 690 ---------------EEGRRIREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFR 734

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            G+DI+  T ++ FN P+D+++ + R   K +   + Y     G A+  +   S     +
Sbjct: 735 EGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSAAQGFI 794

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLI 499
            ++ +       + D   A +                                A+   + 
Sbjct: 795 DRYFERFPGIKGYMDDTVAFAKANGFVQTLFGRKIHTPEINARGPGAGFAKRAAINAPIQ 854

Query: 500 GTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           GTA +++++A       +        LQ+  +L    A    +     AR V     
Sbjct: 855 GTAADVIRRAMVRMPAAIAGIDAKMLLQVHDELLFEVAEDAVDTLIPIAREVMETAC 911


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 96/536 (17%), Positives = 183/536 (34%), Gaps = 80/536 (14%)

Query: 46  DRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D   +  +P       L   L D +VM +  N  ++  +F +  GI+I           A
Sbjct: 396 DAKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY-GIEIAPIDDTMLMSYA 454

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
              G      +       +         +  GK+ I         +  Y    A+     
Sbjct: 455 LHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQITFDRVPLDKATGYAAEDADITLRL 514

Query: 157 QL-FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            L F     R    TR +++ L      ER L  + + +  RG ++D   + ++    AQ
Sbjct: 515 ALTFKPQLHR-AHVTR-VYETL------ERPLVPVLKAMEMRGIKVDRATLSRMSGKFAQ 566

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  +L+E+I  L      +      L   LF    +      +   K       +  LA 
Sbjct: 567 KMAELEEEIHALAGEKF-NVGSPAQLGDILFEKMSLPGGKRGKNG-KYSTPADVLEDLAT 624

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L         + KL     + L E ++ D GR+  +    GA+ TGR +      QN
Sbjct: 625 EHDLPGRVLDWRQLSKLKSTYTDALQEHINPDTGRVHTSYSIAGAN-TGRLASNDPNLQN 683

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  G  LV  D + IE R+L
Sbjct: 684 IPVRS------------------------EEGRRIREAFVAPEGHTLVSLDYSQIELRIL 719

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A +A  D   +AF +G DI+  T ++ FN P+D+++ + R   K +   + Y     G A
Sbjct: 720 AHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAINFGVIYGISGFGLA 779

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   +     + ++ +       + D     ++     +                  
Sbjct: 780 RNLRIPRAEAQGFIDRYFERFPGIKQYMDDTVKFANEHKRVETMFGRVIHTPEIGAKGPR 839

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL----WKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A       + +L       + +     V++G +
Sbjct: 840 AGFAKRAAINAPIQGTAADIIRRAMVRMPDAIAKLPAKMLLQVHDELIFEVEDGAA 895



 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M        K    ++L VHDE++ E  D     +  +   +M
Sbjct: 852 IQGTAADIIRRAMVRMPDAIAKLPAKMLLQVHDELIFEVEDGAAGDLIDVAREVM 906


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 360

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 418

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 419 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 462

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 463 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 522

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 523 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 580

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 581 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 636

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 637 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 735

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 736 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 795

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 796 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 846



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 860


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 105/593 (17%), Positives = 198/593 (33%), Gaps = 99/593 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       +  V       +A      + +   P +L    ++  + S L   L 
Sbjct: 337 DTETTSLRYMDADVVGVSFAIEPGEAAYVPFGHDYMGAPEQL----DRDTVLSQLKPLLE 392

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEH 121
           D     +  N  +++ +     GI++       T + +       S      LA+ +   
Sbjct: 393 DPKKAKLGQNLKYDKNVLANH-GINLNGIA-EDTMLESYVLNSVGSRHDMDSLAMQYLGE 450

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            T   E            I          N ++  +  G Y   D + T  L + L P  
Sbjct: 451 QTITFES-----------IAGKGAKQLTFNQIEL-EQAGPYAAEDADITLRLHQALRPQL 498

Query: 182 D-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +            +  L  +   +  RG  I    + K  + +A+   +L+++  +    
Sbjct: 499 EKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMAELEKEAHEEAGE 558

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L+   +   G+ +V  +     S  +   + +LA +  L RL     ++ 
Sbjct: 559 SF-NLGSPKQLQAIFYDKMGLPVVKKTPKGAPST-AEPVLQELAHEHTLPRLILEHRSLS 616

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     +TL E +    GR+  +      + TGR S      QN+P +           
Sbjct: 617 KLKSTYTDTLPELIHHRTGRIHTSY-HQAVTATGRLSSSEPNLQNIPIRS---------- 665

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +A  G KLV AD + IE R++A ++G+   + AF  
Sbjct: 666 --------------EQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLSGDKGLLTAFEK 711

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
           GEDI+  T A+ F   +D VS +QR   K +   L Y   A    +            + 
Sbjct: 712 GEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIYGMSAFGLSRQLDVGRHQAQEYID 771

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++ +   +   + D                       +  + +  MQ      A+   + 
Sbjct: 772 RYFERYPAVLKYMDNIRKQAHDDGYVETFYGRRLYLPEINARNKQMQQAAERTAINAPMQ 831

Query: 500 GTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           GTA +++K+A        +  HQ   ++   + +     V+E    + R    
Sbjct: 832 GTAADIIKRAMVSVEDWLQEHHQDDARMILQVHDELILEVRESAVDTIREGLE 884



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+   M +          +   ++L VHDE++ E  ++   ++   L   M+  
Sbjct: 831 QGTAADIIKRAMVSVEDWLQEHHQDDARMILQVHDELILEVRESAVDTIREGLEKRMSAA 890


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 360

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 418

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 419 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 462

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 463 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 522

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 523 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 580

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 581 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 636

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 637 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 735

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 736 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 795

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 796 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 846



 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 860


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 111/596 (18%), Positives = 206/596 (34%), Gaps = 110/596 (18%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  +      ++A     A+ +D  P++L     +  + + L   L+
Sbjct: 328 DLETNSLDYIEAEIVGLSFAIKPKEAAYVPLAHDYDAAPLQL----AREGVLARLQPLLQ 383

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           D     V  N  F+R +     GI++   R   + + +   +   S      LAL + + 
Sbjct: 384 DSNRGKVGQNLKFDRNVLANY-GIELEGIR-HDSMLESYVLHSTASRHNMDSLALKYLQR 441

Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T   E   GK      F +  ID      TR            Y   D +   +L    
Sbjct: 442 STISYEEVAGKGAKQLPFNQVPID----KATR------------YAAEDADICLQLHHYF 485

Query: 178 IPLSDGERDLWLLDQ-----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P    E  L  L Q            +   G +ID   +      +    +K++++  +
Sbjct: 486 WPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQEAFE 545

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L       +     ++  L+    + +   +  T +   + + + +LA D  L +L    
Sbjct: 546 LAGEPFNLA-SPKQIQAILYDKLKLPITRKTP-TGQPSTAETVLQELALDYPLPQLLLEY 603

Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            A+ KL +     L   V+   GR+  +      + TGR S      QN+P +       
Sbjct: 604 RALSKLKSTYTDRLPLQVNPRTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRS------ 656

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  G  L+ AD + IE R++A ++ ++  + 
Sbjct: 657 ------------------AEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLA 698

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF  GEDI+  T A+ F TP++ V+ EQR   K +   L Y       A+      S   
Sbjct: 699 AFEAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAHGLAQQLGISRSAAQ 758

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             ++++         + D                       +  S     ++Q    A+ 
Sbjct: 759 HYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERMAIN 818

Query: 496 DKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISAR 541
             + GTA +++K+A     Q           ++Q+  +L    A    +  + + R
Sbjct: 819 APMQGTAADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAIR 874



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 9/123 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKL 597
           +A+             K  +  +   +R+  Y +   G   YL    S+  + R    ++
Sbjct: 756 AAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERM 815

Query: 598 TENI-VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP-YFSVGTLCS 649
             N  +Q  + DI+   M  A +      +   +++ VHDE+V E  +     +   +  
Sbjct: 816 AINAPMQGTAADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAIRE 875

Query: 650 LMT 652
            M 
Sbjct: 876 NMA 878


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 201/591 (34%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F+ P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/568 (17%), Positives = 192/568 (33%), Gaps = 105/568 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+T   V  N  ++  +  +  GI+
Sbjct: 382 AAYVPVAHDYLDAPEQL----DREWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIE 436

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141
           +   +   T + +   N +        LAL F +H          +GK  +  F +  ++
Sbjct: 437 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLT-FNQIDLN 494

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                               Y   D + T  L  RL               + E  L  +
Sbjct: 495 EAAV----------------YAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPV 538

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ID   +    + IA    +L++   ++      +      L+  LF   G
Sbjct: 539 LSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIAGQPF-NMNSPKQLQTILFEQMG 597

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + ++  +     S      + +LA D  L  +      + KL     + L + ++   GR
Sbjct: 598 LPVIKKTPSGTPSTAEE-VLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGR 656

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 657 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 691

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+     I++V
Sbjct: 692 RQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQV 751

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479
           S EQR   K +   L Y       AK            + ++ +         ED     
Sbjct: 752 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSNA 811

Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515
           + H +++  +                       A+   + GTA +++KKA     Q    
Sbjct: 812 AQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 871

Query: 516 ---GVLQLWKDLTEGFACVVQEGGSISA 540
              G ++L   + +     V+E      
Sbjct: 872 EGNGRVKLLMQVHDELVFEVEESCLTEI 899


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEIPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID ++++   + +     +L++   +L +     +     L++ L+    +
Sbjct: 541 SRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++KV+
Sbjct: 694 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/551 (17%), Positives = 190/551 (34%), Gaps = 83/551 (15%)

Query: 46  DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D+  +  MP +D L  L+    D  ++ +  N  ++  +F    GI +           A
Sbjct: 398 DKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFA-ARGITVEPIDDTMLMSYA 456

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
              GL     +A              + +  GK  +        ++  Y    A+  ++ 
Sbjct: 457 LHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTFDRVPVDEAVKYAAEDADITLRL 516

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W  F     R    T  +++ L      ER L  +   +   G ++D   +  +    AQ
Sbjct: 517 WLTFKPQLHRARVTT--VYETL------ERPLVPVLAQMERYGVKVDRATLRAMSGKFAQ 568

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L+ +I +L      +      L   LF   G+   +  + T         +  LA 
Sbjct: 569 KMAALESEIHELAGRSF-NVGSPKQLGEILFDEMGLSGGEKGK-TGAYATGADVLEDLAT 626

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  L         + KL     + L + +  D GR+  +    GA+ TGR +      QN
Sbjct: 627 EHELPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYVQAGAN-TGRLASTDPNLQN 685

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A++G +LV  D + IE R+L
Sbjct: 686 IPVRS------------------------EEGRRIREAFVAASGHRLVSLDYSQIELRIL 721

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A +A  +   +AF  G DI+  T ++ FN P+D+++ E R   K +   + Y     G A
Sbjct: 722 AHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINFGVIYGISGFGLA 781

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   S     + ++ +       + D   A +                         
Sbjct: 782 RNLRIPRSEAQGFIDRYFERFPGIKDYMDATVAFAKEHGYVQTLFGRKIHTPEISAKGPR 841

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISAR 541
                  A+   + G+A +++++A       +     ++   + +     V E  +    
Sbjct: 842 AGFARRAAINAPIQGSAADIIRRAMIRMPDAIEGLPCKMLLQVHDELIFEVAEEATD--- 898

Query: 542 RVANVPRLVMR 552
           R+  + R VM+
Sbjct: 899 RLIEIARDVMQ 909


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/587 (18%), Positives = 198/587 (33%), Gaps = 110/587 (18%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + +H T   E            I     +    N +   +  G Y   D + T +L  
Sbjct: 140 ERWLKHKTITFE-----------EIAGKGKNPLTFNQIAL-EEAGRYAAEDADVTLQLHL 187

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++ P             + E  L  +   I   G +ID  ++    E +     +L++  
Sbjct: 188 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 247

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L ++  
Sbjct: 248 HEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVIL 305

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+  +      + TGR S      QN+P       
Sbjct: 306 EYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 357

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA     +V AD + IE R++A ++ +   
Sbjct: 358 -----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 400

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+        
Sbjct: 401 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 460

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA---------- 493
               +  + +       + +  +A++             L++ D                
Sbjct: 461 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 520

Query: 494 VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
           +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 521 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/589 (18%), Positives = 196/589 (33%), Gaps = 121/589 (20%)

Query: 7   DIET----RSPQPLPKV------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET         L  V      GV AY         A+ + D P +L    ++  +   
Sbjct: 356 DTETDSLDYMVTNLVGVSFATDEGVAAY------VPLAHDYLDAPQQL----DRDWVLEQ 405

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLA 115
           L   L D+    V  N  ++  +  +  GI++   +   T + +   N +        LA
Sbjct: 406 LKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLA 463

Query: 116 LNFSEH-----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           L F +H          +GK  +  F +  ++                    Y   D + T
Sbjct: 464 LRFLQHSCISFEQIAGKGKNQLT-FNQIDLNEAA----------------PYAAEDADVT 506

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L  RL               + E  L  +   I   G  ID   +      IA   ++
Sbjct: 507 LRLHNRLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEE 566

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++ +    +      L+  LF   G+ ++  +     S  +   + +LA D  L
Sbjct: 567 LEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPL 624

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L + ++   GR+  +      + TGR S      QN+P +
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 684 ------------------------NEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
           G+   + AF +G+DI+  T A+     I+ VS EQR   K +   L Y       AK   
Sbjct: 720 GDQALLDAFRDGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLG 779

Query: 450 TMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY------------------- 489
                    + ++ +         ED   A +   +++  +                   
Sbjct: 780 IPRGEAQAYMDKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIQSRNGMRRKA 839

Query: 490 -PEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530
               A+   + GTA +++KKA             G ++L   + +    
Sbjct: 840 AERAAINAPMQGTAADIIKKAMLLVGRWIEEHGDGRVKLLMQVHDELVF 888


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 541 SRIERAGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++KV+
Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V +      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/580 (17%), Positives = 193/580 (33%), Gaps = 115/580 (19%)

Query: 28  AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A     A+ + D P +L   W   +       L   L DE  + V  N  F++ +  +  
Sbjct: 383 AAYLPVAHDYLDAPTQLDRNWVLAQ-------LKPLLEDEKALKVGQNLKFDQSMLARY- 434

Query: 85  GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKG 138
             DI  +     ++L       +        LA  +  H T   E   GK      F + 
Sbjct: 435 --DIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187
           ++                +  G Y   D + T +L   L P             + E  L
Sbjct: 493 AL----------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPL 536

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   I   G  ID +++    + +     +L++   +L +     +     L+  L+ 
Sbjct: 537 LPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYE 595

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS- 301
              + ++  + G   S  +   + +LA D  L ++      + KL     + L   ++  
Sbjct: 596 KQKLPILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPI 654

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+  +      + TGR S      QN+P                              
Sbjct: 655 SGRVHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEG 689

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+
Sbjct: 690 RRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVFGLPL 749

Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           +KV+ +QR   K +   L Y       A+            +  + +       + +  +
Sbjct: 750 EKVTNDQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTR 809

Query: 478 AES---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH-- 514
            ++                      +   +      A+   + GTA +++K+A  A    
Sbjct: 810 KQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAW 869

Query: 515 ---------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                    + ++Q+  +L       V E      R +  
Sbjct: 870 LQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 106/591 (17%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L +E  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   I      +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/509 (18%), Positives = 180/509 (35%), Gaps = 89/509 (17%)

Query: 50  QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
              +P D     L   L D++++ +  N  ++ ++  +  GI +       T +++    
Sbjct: 432 GGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH-GIAMTPID--DTMLISYALD 488

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             S L    +     + L++   G   I+    C     + P      + V       EY
Sbjct: 489 ASSGLAGHGM-----DELSERFLGHKPISYKELCGSGRSAKPIAAVEIDRV------TEY 537

Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              D + T  +++ L P              ER L  +   +  RG  +D  ++ +L   
Sbjct: 538 ASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQILSRLSGN 597

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            AQ++  L+++I K+      +      L   LF   G+     ++   +       +  
Sbjct: 598 FAQKQAALEDEIAKMAGEEF-NPGSPKQLGEILFGKLGLPGGKKTKSG-QWSTDARVLED 655

Query: 273 LAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           LA +   L R       + KL     +TL   +  +GR+  +     ++ TGR S     
Sbjct: 656 LAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRIHTSFSM-ASTTTGRLSSSEPN 714

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                              +R+  +A  GKKL+ AD + IE 
Sbjct: 715 LQNIPVRT------------------------EEGRAIRTAFVAPKGKKLLSADYSQIEL 750

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R+LA IA       AF NG DI+  T ++ FN P++ +    R   K +   + Y     
Sbjct: 751 RILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINFGIIYGISAF 810

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481
           G A          G  ++++ +       + D                     +    + 
Sbjct: 811 GLANQLAIPREEAGQYIKRYFERFPGIRDYMDKTKAFAKKHGYVETLFGRRAHYPDITAK 870

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           +  ++      A+   + GTA +++++A 
Sbjct: 871 NPQIRSFNERAAINAPIQGTAADIIRRAM 899


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/588 (17%), Positives = 194/588 (32%), Gaps = 85/588 (14%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQY 60
           D ET S       L  V +     +A      +          D   TE       +L  
Sbjct: 25  DTETTSLDEMQAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNRLTEGQLPLEVVLNA 84

Query: 61  LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           LR    D  V+ +  N  ++  +  +  G+ +           A   GL +   +     
Sbjct: 85  LRPVLEDPAVLKIGQNIKYDVKIMARY-GVHLAPVDDTMLLSYALHAGLHNHGMDELSER 143

Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
             +     ++E    GK+ +         +  Y    A+  ++ WQ F     +    T 
Sbjct: 144 YLNHRPIPIKELIGSGKSAVTFDHVPVEKAVAYAAEDADITLRLWQHFKPQLPQSRVTT- 202

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +++ L      ER L  +   +   G ++D D + ++    AQ+  +L+E+I       
Sbjct: 203 -VYETL------ERPLIPVLTRMEMAGVQVDRDTLSRMSNAFAQKMVQLEEEIHAAAGRS 255

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF   G       +           +  LA +  L  L      + K
Sbjct: 256 F-NVGSPKQLGEILFDEMGFQGGVKGKNG-AWGTGADVLEDLATEHALPGLILDWRQVAK 313

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + ++ D GR+  +    GA+ TGR +      QN+P +            
Sbjct: 314 LKSTYTDALQDHINPDSGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRT----------- 361

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  GK LV  D + IE R+LA IA  D   +AF  G
Sbjct: 362 -------------EEGRRIRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQG 408

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T ++ FN P+D+++ E R   K +   + Y     G A+  +         + +
Sbjct: 409 LDIHAATASEMFNVPLDQMTPEIRRQAKAINFGVIYGISAFGLARNLRIPRDRAQGFIDR 468

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGT 501
           + +       + D   A +                                A+   + GT
Sbjct: 469 YFERFPGIRAYMDQTIAFAKENGHVRTLFGRRINTPEINAKGPHAGFARRAAINAPIQGT 528

Query: 502 ACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++++A       +     ++   + +     V+E  +     +A 
Sbjct: 529 AADIIRRAMIQMDPAIAHLPARMLLQVHDELLFEVEENAADELTAIAK 576


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/597 (18%), Positives = 195/597 (32%), Gaps = 91/597 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDRTEQSAMPSDL 57
            + ID ET S       L  + +   A  A      +      +    D      +P DL
Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDLVAD-QIPLDL 409

Query: 58  -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
                   L D+ ++ +  N  ++  +F +  GI +           A   G      + 
Sbjct: 410 ALSMLKPVLEDDAILKIGQNMKYDAKIFARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDE 468

Query: 113 CLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRD 166
                         T +  GK+ I  F +  +D             ++ W+LF     R 
Sbjct: 469 LCDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVDQAVCYAAEDADVTLRLWRLFKPQLHRA 527

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              T  +++ L      ER L  +   +   G ++D D + ++    AQ+   L+ +I  
Sbjct: 528 RVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAALEAEIHG 579

Query: 227 LTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNIT-QLAKDLILNR 281
           L  G   +      L   LF       G+   + + GT   +L             +L+ 
Sbjct: 580 LAGGPF-NVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       + L E +    GR+  +    GA+ TGR +      QN+P +       
Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRT------ 691

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  GK LV  D + IE R+LA IA      +
Sbjct: 692 ------------------EEGRRIREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQ 733

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T A+ FN P++ +    R   K +   + Y     G A+  +   +   
Sbjct: 734 AFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY-------------------PEFAVKD 496
             + ++ +       + D   A +  H ++Q  +                      A+  
Sbjct: 794 GFIDRYFERFPGIRAYMDETVAFAKAHGFVQTLFGRRINTPEINAKGPGAGFARRAAINA 853

Query: 497 KLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
            + GTA +++++A     +         +LQ+  +L         +      R V  
Sbjct: 854 PIQGTAADVIRRAMIRMPKALDGLPAKMLLQVHDELLFEVDEAAADPVIARVREVME 910


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++KV+
Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V +      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/570 (18%), Positives = 197/570 (34%), Gaps = 101/570 (17%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + GV AY         A+ + D P +L    ++  +   L   L D+    V  N  ++
Sbjct: 377 TEEGVAAY------VPVAHDYLDAPEQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 426

Query: 77  RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
             +  +  GI++   +   T + +   N +        LAL F +H     E        
Sbjct: 427 ASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 477

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184
               I          N ++  +    Y   D + T  L  RL+              + E
Sbjct: 478 ----IAGKGKKQLTFNQIEL-EQASPYAAEDADVTLRLHNRLLANIEQDEKLKTIYEEVE 532

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   I   G  ID   +    + IA    +L++   ++ +    +      L+  
Sbjct: 533 VPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLDELEQQAFEIAEQEF-NMNSPKQLQAI 591

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299
           LF   G+ +V  +     S  +   + +LA D  L +L      + KL     + L + +
Sbjct: 592 LFEKMGLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 650

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 651 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 685

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+   
Sbjct: 686 DEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIIG 745

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473
             I++VS EQR   K +   L Y       AK            +  + +         E
Sbjct: 746 VDIEQVSAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQQYMDTYFERYPGVMQYME 805

Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510
           D   A +   +++  +                       A+   + GTA +++KKA    
Sbjct: 806 DTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 865

Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGG 536
                ++ QG ++L   + +     VQE  
Sbjct: 866 DEWIESQGQGRVKLLMQVHDELVFEVQESA 895


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/575 (17%), Positives = 193/575 (33%), Gaps = 113/575 (19%)

Query: 28  AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A     A+ + D P +L   W           L   L +E  + V  N  F++ +  +  
Sbjct: 383 AAYLPLAHDYLDAPAQLDRNWVLAT-------LKPLLENEKALKVGQNLKFDQSMLARY- 434

Query: 85  GIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGS 139
           GI++    +  T + +     +        LA  +  H T   E   GK      F + +
Sbjct: 435 GIELRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIA 493

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLW 188
           +                +  G Y   D + T +L   L P             + E  L 
Sbjct: 494 L----------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLL 537

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   I   G  ID +++    + +     +L++   +L +     +     L++ L+  
Sbjct: 538 PILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEK 596

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-D 302
             + ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   
Sbjct: 597 QKLPILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVS 655

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +      + TGR S      QN+P                               
Sbjct: 656 GRVHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGR 690

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++
Sbjct: 691 RIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGMPLE 750

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V+ EQR   K +   L Y       A+            +  + +       + +  + 
Sbjct: 751 SVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGGLEYMERTRK 810

Query: 479 ES---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
           ++                      +   +      A+   + GTA +++K+A  A     
Sbjct: 811 QAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWL 870

Query: 515 --------QGVLQLWKDLTEGFACVVQEGGSISAR 541
                   + ++Q+  +L       V E      R
Sbjct: 871 QQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIR 905



 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619
            RRL   D+    +          RE           +Q  + DI+   M          
Sbjct: 823 GRRLYLPDIHSRNA---NRRKAAEREAINAP------MQGTAADIIKRAMIAVDAWLQQE 873

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTK 653
                 +++ VHDE+V E  ++   S    +  LM +
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRDLMEQ 910


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 105/601 (17%), Positives = 196/601 (32%), Gaps = 100/601 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMP-SDLLQ 59
           D ET S       L  + +     +A     A+  D     L+  D   +  +P  ++L 
Sbjct: 352 DTETTSLNEMQADLVGISLATAPGRACYIPVAHK-DGAADDLFGSDARAEGQLPLDEVLN 410

Query: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L+    D+ ++ +  N  ++  +     GI +           A   GL     +    
Sbjct: 411 ALKPVLEDDAILKIGQNMKYDAKILAAH-GITVAPIDDTMLMSYALHAGLHGHGMDTLSE 469

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
              +            I         +  +D         +         D + T  L+ 
Sbjct: 470 RYLNHSPIP-------IRSLLGSGKAAVTFDRVPVAEAVKY------AAEDADITLRLWL 516

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              ER L  +   +   G  +D D +  +    AQ+   L+ +I 
Sbjct: 517 TLKPQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMSGKFAQKMAGLESEIH 576

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L      +      L   LF   G+   +  + T         +  LA +  L      
Sbjct: 577 ALARRSF-NVGSPKQLGEILFDEMGLPGGEKGK-TGAYATGADVLEDLATEHDLPARVLD 634

Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + +  D GR+  +    GAS TGR+S      QN+P +      
Sbjct: 635 WRQLSKLKSTYTDALQDHIDPDTGRVHTSYLQTGAS-TGRFSSSDPNLQNIPVRS----- 688

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A+ G +LV  D + IE R+LA +AG +   
Sbjct: 689 -------------------EEGRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLK 729

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +G DI+  T ++ FN P+ +++ E R   K +   + Y     G A+  +      
Sbjct: 730 QAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEA 789

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495
              + ++ +       + D   A +                                A+ 
Sbjct: 790 QGFIDRYFERFPGIKDYMDATTAFAKEHGYVQTLFGRKIHTPEIAAKGPRAGFARRAAIN 849

Query: 496 DKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
             + GTA +++++A     + +     ++   + +     V E    S  R+ +V R VM
Sbjct: 850 APIQGTAADIIRRAMIRMPEAIEGLPCKMLLQVHDELIFEVAED---SVDRLIDVARAVM 906

Query: 552 R 552
           +
Sbjct: 907 Q 907



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M             ++L VHDE++ E  +     +  +  
Sbjct: 852 IQGTAADIIRRAMIRMPEAIEGLPCKMLLQVHDELIFEVAEDSVDRLIDVAR 903


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 110/601 (18%), Positives = 206/601 (34%), Gaps = 91/601 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
            + +D ET S       L  + +   A QA     A+    + +   D   +  M     
Sbjct: 346 HVAVDTETTSLDEMRADLVGISLCVAAGQACYIPLAHKAGADDLFGSDARAEGQMDMAAC 405

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            + L   L D +++ +  N  ++  +F   LGI +           A   GL +   +  
Sbjct: 406 LAMLKPVLEDASILKIGQNMKYDAKIFA-LLGIAVAPIDDTMLMSYAMHAGLHNHGMDTL 464

Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVE 168
                          +  GK+ I        D+  Y    A+  ++ WQ+F     +   
Sbjct: 465 SERYLGHIPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADVTLRLWQMFKPQLHQSRV 524

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            T  +++ L      ER L  +   +   G ++D D + ++    AQ+   L+++I K+ 
Sbjct: 525 TT--VYETL------ERPLVPVLAQMEMHGIKVDRDTLSRMSNAFAQKMAGLEDEIQKMA 576

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVD----MSEGTLKSILSHSNITQLAKDLILNRLAS 284
                +      L   LF   G+ + D        T         +  LA    L R   
Sbjct: 577 GRPF-NVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGADVLEDLATIHDLPRRIL 635

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++ D GR+  +    GA  TGR +      QN+P +     
Sbjct: 636 DWRQLAKLKSTYTDALQDHINPDTGRVHTSYSIAGAI-TGRLASTDPNLQNIPVRS---- 690

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A+ G  +V  D + IE R+LA IAG D  
Sbjct: 691 --------------------DEGRRIREAFVAAPGNVIVSLDYSQIELRILAHIAGIDAL 730

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            +AF +G DI+  T ++ F+ P+D+++ + R   K +   + Y     G A+  +   S 
Sbjct: 731 KQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSD 790

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494
               + ++ +       + D   A +                                A+
Sbjct: 791 AQGFIDRYFERFPGIRQYMDDTVAFARDRGYVQTLFGRRINTPEINTKGPQAGFAKRAAI 850

Query: 495 KDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVANV 546
              + GTA +++++A     + +        LQ+  +L         +     AR+V   
Sbjct: 851 NAPIQGTAADVIRRAMIRMPKAIAGLPAKMLLQVHDELLFEVDATAADDLIGIARQVMET 910

Query: 547 P 547
            
Sbjct: 911 A 911


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/591 (18%), Positives = 198/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++            
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y     + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEHADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 516

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++KV+
Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V +      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/573 (17%), Positives = 186/573 (32%), Gaps = 111/573 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82
            ++A  +                  +  D     L   L D+T   V  N  ++  +  +
Sbjct: 399 LSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLAR 458

Query: 83  TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136
             GI++   +   T + +   N +        LAL F +H          +GK  +  F 
Sbjct: 459 Y-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLT-FN 515

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185
           +  ++                    Y   D + T  L  RL               + E 
Sbjct: 516 QIDLNEAAV----------------YAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEV 559

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +   G  ID   +    + IA    +L++   ++      +      L+  L
Sbjct: 560 PLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIAGQPF-NMNSPKQLQTIL 618

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300
           F   G+ ++  +     S      + +LA D  L  +      + KL     + L + ++
Sbjct: 619 FEQMGLPVIKKTPSGTPSTAEE-VLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMIN 677

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +      + TGR S      QN+P +                          
Sbjct: 678 PHTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 712

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    
Sbjct: 713 EGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGV 772

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFED 474
            I++VS EQR   K +   L Y       AK            + ++ +         ED
Sbjct: 773 SIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQTYMDKYFERYPGVMQYMED 832

Query: 475 WEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKH 514
                S H +++  +                       A+   + GTA +++KKA     
Sbjct: 833 TRSNASQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVD 892

Query: 515 Q-------GVLQLWKDLTEGFACVVQEGGSISA 540
           Q       G ++L   + +     V+E      
Sbjct: 893 QWIQEEGNGRVKLLMQVHDELVFEVEESCLTEI 925


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++KV+
Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V +      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 237 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 286

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 287 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 344

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 345 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDSDVTL 388

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 389 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 448

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 449 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 506

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 507 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 562

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 563 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 601

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 602 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 661

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 662 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 721

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 722 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 772



 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 731 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 786


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/582 (18%), Positives = 197/582 (33%), Gaps = 118/582 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLT 525
               +   + GTA +++K+      AW    Q  +++   + 
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 881


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++KV+
Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V +      R +  
Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 196/558 (35%), Gaps = 105/558 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +++ + + L   L DE+   V  N  ++  +  +  G++
Sbjct: 341 AAYIPVAHDYLDAPQQL----DRAWVIAQLKPLLEDESKAKVGQNLKYDASVIARY-GVE 395

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141
           +   R   T + +   N +        LAL F +H          +GK  +  F +  + 
Sbjct: 396 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIDL- 452

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-----------SDGERDLWLL 190
                          Q   +Y   D + T  L +R+ PL           S+ E  L  +
Sbjct: 453 ---------------QEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYSEIEMPLVPV 497

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  L+    + IA    +L++   +L       S     L+  LF    
Sbjct: 498 LSRIERTGVMIDDMLLSAQSQEIALRLDELEQKAYELAGQSFNLS-SPKQLQTILFEQMK 556

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + ++  +     S  +   + +LA D  L ++      + KL     + L + ++   GR
Sbjct: 557 LPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGR 615

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P                                +
Sbjct: 616 VHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRI 650

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    PI++V
Sbjct: 651 RQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQV 710

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474
           S EQR   K +   L Y       AK            + ++ +       + +      
Sbjct: 711 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRA 770

Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RA 512
                            +  S +   +      A+   + GTA +++KKA        + 
Sbjct: 771 AELGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQR 830

Query: 513 KHQGVLQLWKDLTEGFAC 530
           +  G ++L   + +    
Sbjct: 831 EGDGRVKLLMQVHDELVF 848


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/545 (19%), Positives = 195/545 (35%), Gaps = 82/545 (15%)

Query: 46  DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D   +  MP  + L  L+    D +++ +  N  ++  +F +  G+++           A
Sbjct: 395 DALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY-GVNVVPIDDTMLMSYA 453

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQ 154
              G      +       S         +  GK+ I  F K  ID    Y    A+  ++
Sbjct: 454 MHGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAIT-FDKVPIDEATAYAAEDADITLR 512

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            W+LF     + V+ T  +++ L      ER L  +   +   G ++D D++ ++    A
Sbjct: 513 LWKLFKPQLHQ-VQVTT-VYETL------ERPLVPVLAEMEMNGIKVDRDVLSRMSNAFA 564

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           Q+   L+ +I +L      +      L   LF             T K       +  LA
Sbjct: 565 QKMAGLEAEIHELAGENF-NVGSPAQLGEILFDKM-GLEGGKKGKTGKYSTGADILEDLA 622

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  L R       + KL     + L   ++ D GR+  +    GA+ TGR +      Q
Sbjct: 623 TEHELPRRVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQ 681

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +R   IA  G  LV  D + IE R+
Sbjct: 682 NIPVRT------------------------EEGRRIRGAFIAEPGNVLVSLDYSQIELRI 717

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           LA IA      +AFA+G DI+  T ++ F+ P+D+++ E R   K +   + Y     G 
Sbjct: 718 LAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGL 777

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-HHLWMQDQY-------------- 489
           A+  +   +     + ++ +       + D   A +  H ++Q  +              
Sbjct: 778 ARNLRIPRAEAQGFIDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEINAKGP 837

Query: 490 -----PEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISA 540
                   A+   + GTA +++++A       +     ++   + +     V EG     
Sbjct: 838 HAGFSRRAAINAPIQGTAADVIRRAMVRMPGAINGLPAKMLLQVHDELLFEVAEGAVDET 897

Query: 541 RRVAN 545
             +A 
Sbjct: 898 IGIAR 902


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/595 (17%), Positives = 197/595 (33%), Gaps = 107/595 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  V +   A +A     A+   D P +L    ++  + + L   L 
Sbjct: 338 DLETSSLNYMDAEIVGVALAVGAGEAAYVPLAHEGPDTPTQL----DRDRVLAALKPLLE 393

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFSE 120
           D     V  N  ++  +  +    DI  +     T + +      +S      LAL +  
Sbjct: 394 DPDRAKVGQNLKYDMSVLARY---DIHLEGVAYDTMLESYVLDSTASRHDMDSLALKYL- 449

Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  G+A +     C       P+          +         D + T  L + L 
Sbjct: 450 -------GRATVKYEDVCGKGAKQIPFAQVAVETATRY------AGEDADITLRLHQTLY 496

Query: 179 PLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P  +            E  L  +   +   G ++D  L+ +    +A+    L++   + 
Sbjct: 497 PRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMAALEQRAHEE 556

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +G    S     ++  LF   G+ ++  +     S          A+   L RL  +  
Sbjct: 557 AEGPFNLS-SPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAARGYELPRLILAYR 615

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL     + L   +    GR+  +      + TGR S      QN+P +        
Sbjct: 616 SLAKLKTTYTDKLPRLIHPKTGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRT------- 667

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G KL+ AD + +E R++A ++G++   +A
Sbjct: 668 -----------------AEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEGLRQA 710

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA G DI+  T A+ F    ++V  EQR   K +   L Y       A+           
Sbjct: 711 FAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINFGLIYGMSAYGLARQLGIERGEAQA 770

Query: 458 DLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKD 496
            + ++ +       + D  +AE                     + +   ++     A+  
Sbjct: 771 YVDRYFERYPGVKEYMDRTRAEARERGYVETLFGRRLYLPEINARNRQRREYAERTAINA 830

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
            + GTA +L+K+A  A            + V+Q+  +L            +   R
Sbjct: 831 PMQGTAADLIKRAMVAVDAWLTEAHSKARMVMQVHDELVLEVPAADVPAVAEGLR 885


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/538 (17%), Positives = 184/538 (34%), Gaps = 84/538 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLK 110
           L   L D  ++ +  N  ++  +F++  G      I +           A   G      
Sbjct: 420 LKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTMLLSYALFAGQHGHGM 479

Query: 111 NACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165
           +       S       + +  GK+ I        D+  Y    A+  ++ W+LF     +
Sbjct: 480 DTLSERYLSHSPIPIKSLLGTGKSAITFDRVPIADAVAYAAEDADITLRLWKLFKPQLHQ 539

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
               T  +++ L      ER L  +   +   G ++D D + ++    AQ+   L+ +I 
Sbjct: 540 QRVTT--VYETL------ERPLSPVLAKMEMEGVKVDRDTLSRMSNAFAQKMAALESEIH 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L      +      L   LF   G++     + T         +  LA +  L      
Sbjct: 592 ELAGETF-NVGSPKQLGEILFDKMGLEGGKKGK-TGAYATGADILEDLATEHDLPARVLD 649

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + +    GR+  +    GA+ TGR +      QN+P +      
Sbjct: 650 WRQLSKLKSTYTDALQDHIHPETGRVHTSYVQTGAN-TGRLASTDPNLQNIPIRS----- 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  G  L+  D + IE R+LA +AG D   
Sbjct: 704 -------------------EEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAGIDTLK 744

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AFA G+DI+  T ++ FN P+ +++ + R   K +   + Y     G A+  +   +  
Sbjct: 745 QAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAEA 804

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495
              + ++ +       + D   A +                                A+ 
Sbjct: 805 QGFIDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEIAAKGPRAGFAKRAAIN 864

Query: 496 DKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVAN 545
             + GTA +++++A     + +        LQ+  +L         E    +AR+V  
Sbjct: 865 APIQGTAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPESAAEDTIEAARKVME 922



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLM--TKN 654
           +Q  + D++   M             ++L VHDE++ E P++    ++     +M    +
Sbjct: 867 IQGTAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPESAAEDTIEAARKVMESAAD 926

Query: 655 PSWAKGLPLKAE 666
           P+    + L A+
Sbjct: 927 PAVHLDVKLVAD 938


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/604 (18%), Positives = 200/604 (33%), Gaps = 117/604 (19%)

Query: 7   DIETRSPQPLPKV----------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D+ET S   L             GV AY         A+ + D P +L    +++ + + 
Sbjct: 355 DLETDSLDTLSANIIGLSFATAPGVAAY------LPVAHDYLDAPAQL----DRNDVLAR 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114
           L   L +   + V  N  F+R + K     DI  +     ++L     N +        L
Sbjct: 405 LKPLLENPQALKVGQNLKFDRGVLK---SYDIELQGIRFDTMLESYALNSVIGRHDMDTL 461

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL +  H T   E            I          N +   +  G Y   D + T +L 
Sbjct: 462 ALRWLNHKTVTFE-----------EIAGKGKKQLTFNQIAL-EQAGHYAAEDADVTLQLH 509

Query: 175 KRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            ++ P  + E+            L  +   I   G  ID  ++    + +     +L++ 
Sbjct: 510 LKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLAELEQK 569

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +L       S     L+  LF   GI     + G   S  S   + +LA D  L ++ 
Sbjct: 570 AHELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVI 627

Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   ++   GR+  +      + TGR S      QN+P      
Sbjct: 628 LEHRGLSKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP------ 680

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G ++V AD + IE R++A ++ +  
Sbjct: 681 ------------------VRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLSQDKG 722

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y       ++     A 
Sbjct: 723 LLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSSFGLSRQLNIGAG 782

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                +  + +       + +                          + +   +      
Sbjct: 783 EAKKYMDLYFERYPGVLQYMESTRELAAEKGYVSTLDGRRLYLPDINASNAIRRKAAERA 842

Query: 493 AVKDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
           A+   + GTA +++K+A  A             + ++Q+  +L         E  S   R
Sbjct: 843 AINAPMQGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIR 902

Query: 542 RVAN 545
            +  
Sbjct: 903 ALME 906



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+   M                +++ VHDE+V E       +    + +LM  +
Sbjct: 849 QGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIRALMEGS 908

Query: 655 PSWAKGLPLKAE 666
              A  +PL+ +
Sbjct: 909 M--ALDVPLRVD 918


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 516

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
          Length = 605

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++            
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 81

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 516

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF    I  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQSIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 98/573 (17%), Positives = 186/573 (32%), Gaps = 111/573 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82
            ++A  +                  +  D     L   L D+T   V  N  ++  +  +
Sbjct: 373 LSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLAR 432

Query: 83  TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136
             GI++   +   T + +   N +        LAL F +H          +GK  +  F 
Sbjct: 433 Y-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLT-FN 489

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185
           +  ++                    Y   D + T  L  RL               + E 
Sbjct: 490 QIDLNEAAV----------------YAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEV 533

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +   G  ID   +    + IA    +L++   ++      +      L+  L
Sbjct: 534 PLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIAGQPF-NMNSPKQLQTIL 592

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300
           F   G+ ++  +     S      + +LA D  L  +      + KL     + L + ++
Sbjct: 593 FEQMGLPVIKKTPSGTPSTAEE-VLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMIN 651

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +      + TGR S      QN+P +                          
Sbjct: 652 PHTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 686

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+    
Sbjct: 687 EGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGV 746

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFED 474
            I++VS EQR   K +   L Y       AK            + ++ +         ED
Sbjct: 747 SIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 806

Query: 475 WEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKH 514
                + H +++  +                       A+   + GTA +++KKA     
Sbjct: 807 TRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVD 866

Query: 515 Q-------GVLQLWKDLTEGFACVVQEGGSISA 540
           Q       G ++L   + +     V+E      
Sbjct: 867 QWIQEEGNGRVKLLMQVHDELVFEVEESCLTEI 899


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/533 (17%), Positives = 177/533 (33%), Gaps = 89/533 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L+D++++ +  N  ++  +F +  G+D+           A+  GL +   +     
Sbjct: 410 LKPMLQDDSILKIGQNMKYDAKIFARC-GVDVAPIDDTMLMSYAQNAGLHNHGMDTLSDR 468

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                          I         +  +D         +         D + T  L++ 
Sbjct: 469 LLGHTPIP-------IKSLLGTGKSAITFDRVDVAEAVKY------AAEDADITLRLWQH 515

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              ER L  +   +   G ++D D + ++    AQ+   L+ +I +
Sbjct: 516 LKPQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRDTLSRMSNAFAQKMAGLEAEIHE 575

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L   LF   GI+     + T         +  LA +  L       
Sbjct: 576 LAGRSF-NVGSPKQLGEILFDEMGIEGGKKGK-TGAYATGADVLEDLAIEHELPGRVLDW 633

Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L   ++   GR+  +    GA+ TGR +      QN+P +       
Sbjct: 634 RQLSKLKSTYTDALQNHINAETGRVHTSYSIAGAN-TGRLASTDPNLQNIPIRS------ 686

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  GK LV  D + IE R+LA +A      +
Sbjct: 687 ------------------EEGRRIREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQ 728

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AFA+G DI+  T ++ F+ P+D+++ + R   K +   + Y     G A+  +       
Sbjct: 729 AFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRFEAQ 788

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496
             + ++ +      T+ D   A +                                A+  
Sbjct: 789 GFIDRYFERFPGIRTYMDDTVAFAKEHGYVQTLFGRKINTPEIGAKGPQAGFAKRAAINA 848

Query: 497 KLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISAR 541
            + GTA +++++A       +        LQ+  +L        QE    +AR
Sbjct: 849 PIQGTAADVIRRAMVRMPDAIADQPAKMLLQVHDELLFEVENGAQEKLIETAR 901


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 118/592 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L D+ V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQEG 535
              A+   + GTA +++K+      AW    Q  +++   + +     V +G
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKG 891



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKGDLDAVSKRIHQLM 904


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/585 (17%), Positives = 200/585 (34%), Gaps = 106/585 (18%)

Query: 7   DIETRSPQPLPKVGVW-AYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    V  ++A +  +      A+ + D P ++     +      L   L 
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPSVAAYIPVAHDYLDAPDQI----SRERALELLKPLLE 410

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           DE  + V  N  ++R +     GI++    +  T + +     +        LA  + +H
Sbjct: 411 DEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERWLKH 468

Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T   E   GK      F + ++                +  G Y   D + T +L  ++
Sbjct: 469 KTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKM 512

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P             + E  L  +   I   G +ID  ++    E +     +L++   +
Sbjct: 513 WPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHE 572

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L ++    
Sbjct: 573 IAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEY 630

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L   ++   GR+  +      + TGR S      QN+P         
Sbjct: 631 RGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--------- 680

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   I      +V AD + IE R++A ++ +   + 
Sbjct: 681 ---------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLT 725

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+          
Sbjct: 726 AFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQ 785

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA----------VK 495
             +  + +       + +  +A++             L++ D                + 
Sbjct: 786 KYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAIN 845

Query: 496 DKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
             + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 846 APMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 516

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 581


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/624 (18%), Positives = 214/624 (34%), Gaps = 93/624 (14%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMP----- 54
            +D ET S       L  + +      A      +   D   +   D+  +  +P     
Sbjct: 349 AVDTETTSLNEMTADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKLAEGQLPLQQTL 408

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L D  ++ +  N  ++  +F +  G+ +           A   GL     +   
Sbjct: 409 DLLKPMLEDPAILKIGQNMKYDAKIFARY-GVAVAPIDDTMLLSYAMHGGLHGHGMDTLS 467

Query: 115 ALNFSEH----LTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVE 168
               S         +  GK+ I  F K +ID    Y    A+  ++ WQLF     R   
Sbjct: 468 ERYLSHTPIPIKPLLGSGKSAIT-FDKVAIDEATAYAAEDADITLRLWQLFKPQLHRAQV 526

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            T  +++ L      ER L  +   +   G ++D +++ ++    AQ+   L+ +I +L 
Sbjct: 527 TT--VYETL------ERPLVPVLAEMEMHGVKVDREVLSRMSNAFAQKMAGLEAEIHELA 578

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      +   LF    ++       T K       +  LA +  L         
Sbjct: 579 GEPF-NVGSPAQVGEILFDKMSLEGGKKG-KTGKYSTPADVLEDLATEHELPARILDWRQ 636

Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   ++ D GR+  +    GA+ TGR +      QN+P +         
Sbjct: 637 LSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQNIPVRT-------- 687

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G  L+  D + IE R+LA IA      +AF
Sbjct: 688 ----------------EEGRRIREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAF 731

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
           A+G DI+  T ++ F+ P+D+++ E R   K +   + Y     G A+  +   +     
Sbjct: 732 ADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQEF 791

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKL 498
           + ++ +      T+ D   A +                                A+   +
Sbjct: 792 IDRYFERFPGIRTYMDDTIAFAKEHGFVQTLFGRRIHTPEINAKGPHAGFARRAAINAPI 851

Query: 499 IGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
            GTA +++++A       +        LQ+  +L    A    E    +AR +       
Sbjct: 852 QGTAADVIRRAMVRMPDAIRDLPAKMLLQVHDELLFEVAEEAVEDTIAAARDIME--GAA 909

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVK 574
               + DV +V+ + R   +++  
Sbjct: 910 DPAVRLDVRLVVDAGRGANWAEAH 933


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 189/558 (33%), Gaps = 105/558 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE    V  N  ++  +  +  GI+
Sbjct: 381 AAYVPVAHDYLDAPQQL----DRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY-GIE 435

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141
           +   +   T + +   N +        LAL F +H          +GK  +  F +  +D
Sbjct: 436 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIDLD 493

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                               Y   D + T  L  RL               + E  L  +
Sbjct: 494 ----------------EASPYAAEDADVTLRLHNRLFANIEQDDKLKTVYEEIEMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID   +      IA    +L++   ++ +    +      L+  LF   G
Sbjct: 538 LSRIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEF-NMNSPKQLQALLFEKMG 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + ++  +     S  +   + +LA D  L +L      + KL     + L + ++   GR
Sbjct: 597 LPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 655

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 656 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 690

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ V
Sbjct: 691 RQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDV 750

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479
           S EQR   K +   L Y       AK            + ++ +         ED   A 
Sbjct: 751 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 810

Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515
           S   +++  +                       A+   + GTA +++KKA     Q    
Sbjct: 811 SEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 870

Query: 516 ---GVLQLWKDLTEGFAC 530
              G ++L   + +    
Sbjct: 871 EGNGRVKLLMQVHDELVF 888


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 207/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++  +  A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLNAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLNAVAKRIHQLM 904


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 109/613 (17%), Positives = 206/613 (33%), Gaps = 121/613 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +  +   
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPEQI----SRERVLEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114
           L   L DE  + V  N  ++R +       DI  +     ++L     N +        L
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P             + E  L  +   I   G +ID  ++    E +     +
Sbjct: 506 LQLHLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLAE 565

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 566 LEKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+   
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLN 778

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490
                    +  + +       + +  +A++      +                      
Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAG 838

Query: 491 --EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISAR 541
               A+   + GTA +++K+      AW    +  +++   + +     V ++   + A+
Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHDELVFEVHKDDLDVVAK 898

Query: 542 RVANVPRLVMRRH 554
           ++  +     R  
Sbjct: 899 KIHQLMENCTRLD 911



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651
           Q  + DI+   M        A K    +++ VHDE+V E   D        +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHDELVFEVHKDDLDVVAKKIHQLM 904


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 928

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated
           bacterium]
          Length = 206

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 189/206 (91%), Positives = 194/206 (94%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY
Sbjct: 1   MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL
Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
           +  ER LWLLDQ INDRGYRIDLDLV
Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 109/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
              A+   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVSKRIHQLM 904


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +  + + 
Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLTL 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L DE V+ V  N  ++R +       DI  +     ++L       +        L
Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   +
Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y       A+   
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    +  + +       + +  +A++      +                      
Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840

Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W    +  +++   + +     V +
Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 892



 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        + K    +++ VHDE+V E       +V   +  LM
Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 190/558 (34%), Gaps = 105/558 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE    V  N  ++  +  +  GI+
Sbjct: 381 AAYVPVAHDYLDAPQQL----DRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY-GIE 435

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141
           +   +   T + +   N +        LAL F +H          +GK  +  F +  +D
Sbjct: 436 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIDLD 493

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                               Y   D + T  L  RL               + E  L  +
Sbjct: 494 ----------------EASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID   +      IA    +L++   ++ +    +      L+  LF   G
Sbjct: 538 LSRIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEF-NMNSPKQLQALLFEKMG 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + +++ +     S  +   + +LA D  L +L      + KL     + L + ++   GR
Sbjct: 597 LPVINKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 655

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 656 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 690

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ V
Sbjct: 691 RQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDV 750

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479
           S EQR   K +   L Y       AK            + ++ +         ED   A 
Sbjct: 751 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 810

Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515
           S   +++  +                       A+   + GTA +++KKA     Q    
Sbjct: 811 SEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 870

Query: 516 ---GVLQLWKDLTEGFAC 530
              G ++L   + +    
Sbjct: 871 EGNGRVKLLMQVHDELVF 888


>gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 384

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 185/390 (47%), Gaps = 56/390 (14%)

Query: 335 RSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLAW
Sbjct: 1   LSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAW 60

Query: 392 IAGEDWKIKAFA----------------------------------------NGEDIYVT 411
           +AGE  K+ AF                                          G+DIY  
Sbjct: 61  LAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKR 120

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA +F      V+KEQR IGKV ELALGY GG   F   A+   +DL+  ++   +   
Sbjct: 121 AYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPP 179

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
               E  E+      +Q P F + D+    AC++ K+AWR  H  +   WK L       
Sbjct: 180 LLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDA 238

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TS 585
           ++   +           + M+  +  + + LPS R L Y+  +    G  SY+ T   T 
Sbjct: 239 IRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTR 293

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+  
Sbjct: 294 KWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAA 353

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 354 HLAALMATPPPWAQGLPLAAEGFQTHRYRK 383


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 111/613 (18%), Positives = 208/613 (33%), Gaps = 121/613 (19%)

Query: 7   DIETRSPQPLPKV----------GVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPS 55
           D ET S   +             GV AY         A+ + D P ++  DR  +   P 
Sbjct: 357 DTETDSLDNISANMVGLSFATAPGVAAY------VPVAHDYLDAPDQIPRDRVLELMKPV 410

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACL 114
                L D+  + V  N  F+R + +   GI++    +  T + +     +        L
Sbjct: 411 -----LEDDKALKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMDSL 463

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P               E  L  +   I   G +ID  ++      +AQ   +
Sbjct: 508 LQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTE 567

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   +L       S     L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 568 LEQKAHELAGEPFNLS-SPKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVAATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +   +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFK 449
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y   A    +   
Sbjct: 721 RDKGLLTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINFGLIYGMSAFGLSRQLN 780

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    +  + +       + +  +A++      +                      
Sbjct: 781 IPRKESQKYMDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAG 840

Query: 490 -PEFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISAR 541
               A+   + GTA +++K+      AW  K +  +++   + +     V ++     +R
Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLEAVSR 900

Query: 542 RVANVPRLVMRRH 554
           ++  +    M   
Sbjct: 901 KIHELMENSMTLD 913



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           Q  + DI+   M          K    +++ VHDE+V E       +V   +  LM
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLEAVSRKIHELM 906


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 125/594 (21%), Positives = 216/594 (36%), Gaps = 102/594 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
            ID+ET S  PL    V  YA       A      + +   P +L     ++ +   L  
Sbjct: 317 AIDLETTSLNPLDASIVG-YAVSCLAHEAYYIPIGHRYLGAPEQLP----EALVLELLGP 371

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNF 118
            L D     +  N  ++  + +++ G+++    W  T + A       +S     LAL +
Sbjct: 372 LLTDPDRKKIGQNLKYDYQVLQQS-GVELAGI-WCDTMLAAYLVNPSRNSQGLDALALEY 429

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            +H        A +A   K  ++    D  RA         G Y   D +AT  L + L+
Sbjct: 430 LDHRMI---SYAEVAGTGKCELNFSEVDLDRA---------GPYSCEDADATYLLHEILL 477

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P          L D E  L  +   +   G ++D++L+ +L     ++  +L+  I +  
Sbjct: 478 PKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIELEAKIHEHC 537

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
            G   +      L   LF   G+ +   ++G      +   + +LA++  + RL     +
Sbjct: 538 GGSF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLLLQYRS 596

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           I KL     + L   V    GR+  +      + TGR S      QN+P           
Sbjct: 597 ISKLKSTYTDALPRLVDPKTGRVHTSYN-QAITNTGRLSSSDPNLQNIP----------- 644

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                          G     +R   IA  G  ++ AD + IE RVLA ++G+    +AF
Sbjct: 645 -------------VRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLSGDRVLCEAF 691

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           A GEDI+  T A+ F    + V+ E R   KV+   + Y  G    AK            
Sbjct: 692 AAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQGAFSLAKELGVAPKQAKAF 751

Query: 459 LQQFSQNVKSTSTFEDWEQAESH-------HLWMQDQYPEFAVKD--------------K 497
           ++ + +      +F D   AE+         L  + Q PE A K+               
Sbjct: 752 IENYFERHSGARSFLDRCIAEAETCGFVTTILGRRLQIPEIASKNGNARAFAQRNATNYP 811

Query: 498 LIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           + G+A +++K A           +   + ++Q+  +L        +E      R
Sbjct: 812 IQGSAADIIKAAMIRVTRRMLEEKVASRLIMQVHDELVFEVPRNERELMEDLVR 865



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    +++ VHDE+V E P      +  L  
Sbjct: 812 IQGSAADIIKAAMIRVTRRMLEEKVASRLIMQVHDELVFEVPRNERELMEDLVR 865


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 116/593 (19%), Positives = 207/593 (34%), Gaps = 114/593 (19%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A +A     A+ + D PV+L    ++  +   L   L DE  + V  N  F+R +    L
Sbjct: 382 AGKAAYLPVAHDYLDAPVQL----DRDEVLKQLKPILEDEKQLKVGQNLKFDRGVL---L 434

Query: 85  GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKG 138
             DI  K     ++L       +        LA  +  H T   E   GK      F + 
Sbjct: 435 RYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAGKGKNQLTFNQI 494

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187
           ++                +    Y   D + T +L + L P            +D E  L
Sbjct: 495 AL----------------EQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEMPL 538

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   I   G  ID +++    + +A    +L+    +L +     S  T  L+  L+ 
Sbjct: 539 VPVLSHIERTGVLIDQNILAAHSKELAIRLNELENKAHELAEEPFNLS-STKQLQAILYE 597

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD 302
              + ++  + G   S  +   + +LA D  L ++      + KL     + L   ++  
Sbjct: 598 KQKLPILKKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPQ 656

Query: 303 -GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+  +      + TGR S      QN+P                              
Sbjct: 657 SGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------------------VRNDEG 691

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   IA     ++ AD + IE R++A ++ ++  +KAFA G+DI+  T A+ F TP+
Sbjct: 692 RRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPL 751

Query: 422 DKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-- 475
           +KVS EQR   K +   L Y   A    +            +  + +       + +   
Sbjct: 752 EKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQRYMDLYFERYPGVLEYMERTR 811

Query: 476 -------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                 +S +   +      A+   + GTA +++K+A  +    
Sbjct: 812 TQASEQGYVETLDGRRLYLPDIKSSNAMRRKGAERAAINAPMQGTAADIIKRAMIS---- 867

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVP-RLVMRRHKRDVHIVLPSSRRL 568
            +  W          +++  +  AR +  V   LV   HK DV +     R L
Sbjct: 868 -VADW----------LKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNL 909



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 17/119 (14%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
             V         +     ++     RRL   D+K   +          R           
Sbjct: 801 PGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAM---RRKGAERAAINAP----- 852

Query: 601 IVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651
            +Q  + DI+   M +              I++ VHDE+V E   D    +   + +LM
Sbjct: 853 -MQGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNLM 910


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +  + + 
Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L DE V+ V  N  ++R +       DI  +     ++L       +        L
Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   +
Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y       A+   
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    +  + +       + +  +A++      +                      
Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840

Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W    +  +++   + +     V +
Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 892



 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        + K    +++ VHDE+V E       +V   +  LM
Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELNAVSKKIHELM 906


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +  + + 
Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLTL 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L DE V+ V  N  ++R +       DI  +     ++L       +        L
Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   +
Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y       A+   
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    +  + +       + +  +A++      +                      
Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840

Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W    +  +++   + +     V +
Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 892



 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        + K    +++ VHDE+V E       +V   +  LM
Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 105/592 (17%), Positives = 198/592 (33%), Gaps = 101/592 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  +       +A     A+ + D P +L    +++++   L   L 
Sbjct: 354 DLETDSLDTLSANIVGISFAIEPGKAAYLPVAHDYLDAPAQL----DRNSVLERLKPLLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  ++ V  N  ++R + K     DI  +     ++L        +L +     +     
Sbjct: 410 DPALLKVGQNLKYDRGVLKNY---DIELQGIKFDTMLESY-----ALSSVGSRHDMDTLS 461

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
           ++    K +   F + +             ++       Y   D + T +L  ++ P  +
Sbjct: 462 SRWLNHKTV--SFEEIAGKGKKQLTFNQIDLE---QAAHYAAEDADVTLQLHLKMWPELE 516

Query: 183 GER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            E+            L  +   I   G  ID  ++    + +     +L++   +L    
Sbjct: 517 KEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLAELEQKAHELAGEP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              S     L+  LF   GI     + G   S  S   + +LA D  L ++      + K
Sbjct: 577 FNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILENRGLAK 634

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   ++   GR+  +      + TGR S      QN+P              
Sbjct: 635 LKSTYTDKLPLMINPITGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------------- 679

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IAS G K+V AD + IE R++A ++ +   + AFA G
Sbjct: 680 ----------VRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHLSQDKGLLSAFAEG 729

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQ 461
            DI+  T A+ F   +DKV+ EQR   K +   L Y   A    +     A      +  
Sbjct: 730 MDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDL 789

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + +                          + +   +      A+   + G
Sbjct: 790 YFERYPGVLEYMESTRQQAAEKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPMQG 849

Query: 501 TACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
           TA +++KKA  A             + ++Q+  +L         E  +   R
Sbjct: 850 TAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDELVFEVKTSEVEAATAKIR 901


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTRLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +    ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 ERKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493
                   +  + +       + +  +A++             L++ D            
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLSDIKSSNGARRAAA 839

Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   + GTA +++K+      AW    Q  +++   + +     V +
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 104/558 (18%), Positives = 190/558 (34%), Gaps = 105/558 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L DE    V  N  ++  +  +  GI+
Sbjct: 381 AAYVPVAHDYLDAPQQL----DRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY-GIE 435

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141
           +   +   T + +   N +        LAL F +H          +GK  +  F +  +D
Sbjct: 436 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIELD 493

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                               Y   D + T  L  RL               + E  L  +
Sbjct: 494 ----------------EASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID   +      IA    +L++   ++ +    +      L+  LF   G
Sbjct: 538 LSRIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEF-NMNSPKQLQALLFEKMG 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + ++  +     S  +   + +LA D  L +L      + KL     + L + ++   GR
Sbjct: 597 LPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 655

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 656 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 690

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +AS G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ V
Sbjct: 691 RQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDV 750

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479
           S EQR   K +   L Y       AK            + ++ +         ED   A 
Sbjct: 751 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 810

Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515
           S   +++  +                       A+   + GTA +++KKA     Q    
Sbjct: 811 SEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 870

Query: 516 ---GVLQLWKDLTEGFAC 530
              G ++L   + +    
Sbjct: 871 EGNGRVKLLMQVHDELVF 888


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 94/527 (17%), Positives = 181/527 (34%), Gaps = 77/527 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D++++ +  N  ++  +FK+ +GID+           A   GL     +     
Sbjct: 419 LKPMLEDDSILKIGQNMKYDAKIFKR-VGIDVDPIDDTMLMSYAMNAGLHRHGMDVLSEQ 477

Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
                       +  GK+          D+  Y    A+  ++ W++F     R      
Sbjct: 478 YLGHTPIPIKPLLGAGKSAKTFNRVPVEDAVRYAAEDADITLRLWEVFKPQLHR------ 531

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              +        ER L  +   +   G ++D D + ++    AQ+   L++++ +L  G 
Sbjct: 532 --KQVTSVYETMERPLVPVLAKMEMHGIKVDRDTLSRMSNAFAQKMAGLEDELYELAGGK 589

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287
             +      +   LF   G++     +     T   +L            +L+    S  
Sbjct: 590 F-NVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLEDLATEHDLPGRVLDWRQLSKL 648

Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L   ++   GR+  +    GA+ TGR S      QN+P +             
Sbjct: 649 KSTYTDALQTHINAETGRVHTSYSITGAN-TGRLSSTDPNLQNIPIRT------------ 695

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   IA  GK LV  D + IE R+LA +A  D   +AF +G 
Sbjct: 696 ------------DEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGH 743

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T ++ FN P+D+++ + R   K +   + Y     G A+  +   +     + ++
Sbjct: 744 DIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRY 803

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTA 502
            +      T+ D   A +      +                         A+   + GTA
Sbjct: 804 FERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINAKGPGAGFAKRAAINAPIQGTA 863

Query: 503 CELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISAR 541
            +++++A       +        LQ+  +L         E    +AR
Sbjct: 864 ADVIRRAMIRMDDAIAHLPAKMLLQVHDELVFEVDKDAAEDLIAAAR 910



 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
           +Q  + D++   M             ++L VHDE+V E        +
Sbjct: 859 IQGTAADVIRRAMIRMDDAIAHLPAKMLLQVHDELVFEVDKDAAEDL 905


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKSGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 100/559 (17%), Positives = 184/559 (32%), Gaps = 107/559 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  +   L   L D     V  N  ++  +  +    D
Sbjct: 379 AAYVPVAHDYLDAPEQL----DRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY---D 431

Query: 88  IPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSI 140
           I  K     T + +   N +        LAL F +H          +GK  +  F +  +
Sbjct: 432 IELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIEL 490

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189
                           +    Y   D + T  L  RL               + E  L  
Sbjct: 491 ----------------EQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVP 534

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   I   G  ID   +      I     +L++   ++ +    +      L+  LF   
Sbjct: 535 VLSRIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIAEQEF-NMNSPKQLQAILFEKM 593

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303
           G+ +V  +     S  +   + +LA D  L +L      + KL     + L + ++   G
Sbjct: 594 GLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTG 652

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P +                          A   
Sbjct: 653 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEAGRR 687

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I+ 
Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 747

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           VS EQR   K +   L Y       AK            +  + +       + +     
Sbjct: 748 VSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDTYFERYPGVMQYMEDTRST 807

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515
                             + +S +   +      A+   + GTA +++KKA     Q   
Sbjct: 808 AADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQ 867

Query: 516 ----GVLQLWKDLTEGFAC 530
               G ++L   + +    
Sbjct: 868 EEGNGRVKLLMQVHDELVF 886


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +  + + 
Sbjct: 354 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 403

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L DE V+ V  N  ++R +       DI  +     ++L       +        L
Sbjct: 404 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 460

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 461 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 504

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   +
Sbjct: 505 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 564

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 565 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 622

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 680 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y       A+   
Sbjct: 718 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 777

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    +  + +       + +  +A++      +                      
Sbjct: 778 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 837

Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W    +  +++   + +     V +
Sbjct: 838 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 889



 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        + K    +++ VHDE+V E       +V   +  LM
Sbjct: 848 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 903


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 198/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPS 55
           D ET S   +           + GV AY         A+ + D P ++  DR  +   P 
Sbjct: 355 DTETDSLDNITANLVGLSFAVEPGVAAY------VPVAHDYLDAPDQIARDRALELLKP- 407

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACL 114
                L DE V  V  N  ++R +     GI++    +  T + +     +        L
Sbjct: 408 ----LLEDEKVSKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSL 461

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P             + E  L  +   +   G  ID  ++ K  E I     +
Sbjct: 506 LQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLAE 565

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 566 LEQKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I      +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y       A+   
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMSAFGLARQLN 778

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490
                    +  + +       + +  +A++      +                      
Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAG 838

Query: 491 --EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W    Q  +++   + +     V +
Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELVFEVHK 890



 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E        V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLM 904


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V++EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+     GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 840 ERAAINAPTQGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 900 IHQLMENCTRID 911



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            Q  + DI+   M          +    +++ VHDE+V E       +V   +  LM
Sbjct: 848 TQGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/592 (18%), Positives = 201/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +  + + 
Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L DE ++ V  N  ++R +       DI  +     ++L       +        L
Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507

Query: 171 RELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   +
Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y       A+   
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    +  + +       + +  +A++      +                      
Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840

Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W  K Q  +++   + +     V +
Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHK 892



 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E       +V   +  LM
Sbjct: 851 QGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/562 (17%), Positives = 195/562 (34%), Gaps = 103/562 (18%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            A     A+ +   P +L    ++    + L   L D T + V  +  F+R + +   GI
Sbjct: 360 DAAYLPLAHDYLGAPEQL----DREQTLAKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GI 414

Query: 87  DIPSKRWICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALIAR-FCKGSID 141
            +    +  T + +      +S   + +     LN++    +   GK +    F +  ++
Sbjct: 415 HLQGIAF-DTMLESYVLNSTASRHNMDDLAKKYLNYTTQTFEDVAGKGVKQLTFNQVELE 473

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
              +                Y   D + T  L + L P           L + E  L  +
Sbjct: 474 KAAF----------------YAAEDADITLRLHQTLWPQVEKEPALKSLLLEMELPLAEV 517

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ID  L+    + I     +L+    ++  G   +      L   LF    
Sbjct: 518 LSDMERTGALIDPFLLQNQSQQIEVRLAELESQAHEIAGGPF-NLGSPKQLGEVLFEKLQ 576

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + ++  +     S      + +LA D  L +L     ++ KL     + L   ++   GR
Sbjct: 577 LPVIKKTPKGAPSTAEE-VLQELAYDYPLPKLLLEHRSLSKLKSTYTDKLPLMIAPSTGR 635

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 636 VHTSY-HQAVTATGRLSSSDPNLQNIPVRT------------------------EEGRRI 670

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A +G K+V AD + IE R++A ++ +D  ++AFA+G+DI+  T A+  N   + V
Sbjct: 671 RQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMNITPEAV 730

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475
           + EQR   K +   L Y       AK            + ++ +      T+ +      
Sbjct: 731 TSEQRRNAKAINFGLIYGMSAFGLAKQLGIPRGEAQRYMDRYFERYPGVLTYMERTREQA 790

Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK------ 513
                              ++ ++ ++      A+   + GTA +++K+A          
Sbjct: 791 EQAGYVETLFGRRLYLPDIKAKNMGLRKAAERAAINAPMQGTAADIIKRAMIKLADWIKT 850

Query: 514 -HQGVLQLWKDLTEGFACVVQE 534
              G +++   + +     V+E
Sbjct: 851 CDNGTIRMVMQVHDELVFEVRE 872


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/568 (18%), Positives = 194/568 (34%), Gaps = 108/568 (19%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ + D P ++     +      L   L DE  + V  N  ++R +
Sbjct: 55  GVAAY------IPVAHDYLDAPDQI----SRERALELLKPLLEDEKALKVGQNLKYDRGI 104

Query: 80  FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134
                GI++    +  T + +     +        LA  + +H T   E   GK      
Sbjct: 105 LANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 162

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183
           F + ++                +  G Y   D + T +L  ++ P             + 
Sbjct: 163 FNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENI 206

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   I   G +ID  ++    E +     +L++   ++       S  T  L+ 
Sbjct: 207 EMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLS-STKQLQT 265

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298
            LF   GI  +  + G   S  S   + +LA D  L ++      + KL     + L   
Sbjct: 266 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 324

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++   GR+  +      + TGR S      QN+P                          
Sbjct: 325 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 359

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F
Sbjct: 360 NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 419

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P++ V+ EQR   K +   L Y       A+            +  + +       + 
Sbjct: 420 GLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 479

Query: 474 DWEQAES-----------HHLWMQDQYPEFA----------VKDKLIGTACELVKK---- 508
           +  +A++             L++ D                +   + GTA +++K+    
Sbjct: 480 ERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIA 539

Query: 509 --AWRAKHQGVLQLWKDLTEGFACVVQE 534
             AW    Q  +++   + +     V +
Sbjct: 540 VDAWLQAEQPRVRMIMQVHDELVFEVHK 567



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/599 (18%), Positives = 206/599 (34%), Gaps = 109/599 (18%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ID ET +       L  + +    E A     A+   D   +L     +  + + L   L
Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEENASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
            +  +  +  N  ++  + K   GI +   R+  T + +              LAL +  
Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436

Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + T   +   GK     RF +  ++                  G Y   D + T  L  +
Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480

Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+++ ++L
Sbjct: 481 LYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAIQL 540

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L+  LF    + +V  +  T +   + S + +LA D  L  +     
Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ KL     + L + ++       T      + TGR S      QN+P +         
Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA  G  ++ AD + IE R++A ++ +D  ++AF
Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANG DI+  T ++ F T +D VSKEQR   K +   L Y       AK            
Sbjct: 695 ANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  + +       + +  + ++H                     +L  Q      A+   
Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814

Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           + GTA +++KK   A             + ++Q+  +L         E       ++  
Sbjct: 815 MQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLME 873


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 201/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +  + + 
Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L DE ++ V  N  ++R +       DI  +     ++L       +        L
Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507

Query: 171 RELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   +
Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AF+ G+DI+  T A+ F  P+D VS EQR   K +   L Y       A+   
Sbjct: 721 RDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    +  + +       + +  +A++      +                      
Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840

Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W  K Q  +++   + +     V +
Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHK 892



 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E       +V   +  LM
Sbjct: 851 QGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/596 (18%), Positives = 206/596 (34%), Gaps = 106/596 (17%)

Query: 7   DIETRSPQPLPKVGVW-AYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    V  ++A +  I      A+ + D P +L     +  +   L   L 
Sbjct: 357 DTETDSLDNITANMVGLSFATEPGIAAYVPVAHDYLDAPEQL----SRERVLELLKPILE 412

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           D+  + V  N  ++R + +   GI++    +  T + +     +        L+  + +H
Sbjct: 413 DDNALKVGQNLKYDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMDSLSDRWLKH 470

Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T   E   GK      F + ++                +  G Y   D + T +L  ++
Sbjct: 471 KTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKM 514

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P             + E  L  +   I   G +ID  ++      +AQ   +L++   +
Sbjct: 515 WPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQKAHE 574

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L       S     L+  LF   GI  +  + G   S  S   + +LA D  L ++    
Sbjct: 575 LAGEPFNLS-SPKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEY 632

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L   ++   GR+  +      + TGR S      QN+P         
Sbjct: 633 RGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVAATGRLSSTDPNLQNIP--------- 682

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA +   +V AD + IE R++A ++ +   + 
Sbjct: 683 ---------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLT 727

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456
           AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +          
Sbjct: 728 AFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQ 787

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVK 495
             +  + +       + +  +A++      +                          A+ 
Sbjct: 788 KYMDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAIN 847

Query: 496 DKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
             + GTA +++K+      AW  K +  +++   + +     V +    S  +  +
Sbjct: 848 APMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLDSVSKTIH 903



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          K    +++ VHDE+V E       SV  T+  LM
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLDSVSKTIHELM 906


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/576 (17%), Positives = 197/576 (34%), Gaps = 104/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + + D P++L    ++  + + L   L DE+V  +  N  F++ +  +  GID
Sbjct: 380 AAYLPLGHDYLDAPMQL----DRDKVLAVLKPLLEDESVAKIGQNLKFDKGVMARY-GID 434

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        L+  + +H T   E   GK      F +  ++ 
Sbjct: 435 LRGIAF-DTMLESYVLDSVAGRHDMDSLSDRYLQHKTITFEEIAGKGKNQLTFNQIPLEQ 493

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI----PLSD-------GERDLWLLD 191
                              Y   D + T  L + L     P  +        +  L  + 
Sbjct: 494 AAV----------------YAAEDADVTLRLHETLWAKLEPQPELCKVFQNIDMPLVPVL 537

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  ID  ++ +  + + Q   +L+    +L       S     L   L+    +
Sbjct: 538 SRMERTGVLIDTTILGEHSQELTQRLAELEVQAHELAGEAFNLS-SPKQLGTILYEKLQL 596

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLR 306
            ++  +     S  +   + +LA D  L +L      + KL     + L + ++   +  
Sbjct: 597 PVIKKTPKGAPST-NEEVLAELALDHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRV 655

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T      + TGR S      QN+P                                +R 
Sbjct: 656 HTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNEQGRRIRQ 691

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             IA  G  ++ AD + IE R++A ++ +   ++AF+NG DI+  T A+ F  P+D+V+ 
Sbjct: 692 AFIAPEGYHILAADYSQIELRIMAHLSRDAGLLRAFSNGLDIHRATAAEVFGLPLDRVTT 751

Query: 427 EQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           EQR   K +   L Y                 A+ +  +       +Q++ +  +  +  
Sbjct: 752 EQRRSAKAINFGLIYGMSAFGLSRQLAIPRNEAQKYMNLYFERYPGVQEYMERTRQQAAD 811

Query: 473 EDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------- 514
           + +               S +   +      A+   + GTA +++KKA  A         
Sbjct: 812 QGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDGWLQQEK 871

Query: 515 ---QGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                ++Q+  +L       V +  S   R +    
Sbjct: 872 PLVTMLMQVHDELVFEVHHSVLDEASAKIRNLMEGC 907


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/568 (18%), Positives = 194/568 (34%), Gaps = 108/568 (19%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ + D P ++     +      L   L DE  + V  N  ++R +
Sbjct: 55  GVAAY------IPVAHDYLDAPDQI----SRERALELLKPLLEDEKALKVGQNLKYDRGI 104

Query: 80  FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134
                GI++    +  T + +     +        LA  + +H T   E   GK      
Sbjct: 105 LANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 162

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183
           F + ++                +  G Y   D + T +L  ++ P             + 
Sbjct: 163 FNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENI 206

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   I   G +ID  ++    E +     +L++   ++       S  T  L+ 
Sbjct: 207 EMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLS-STKQLQT 265

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298
            LF   GI  +  + G   S  S   + +LA D  L ++      + KL     + L   
Sbjct: 266 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 324

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++   GR+  +      + TGR S      QN+P                          
Sbjct: 325 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 359

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F
Sbjct: 360 NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 419

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P++ V+ EQR   K +   L Y       A+            +  + +       + 
Sbjct: 420 GLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 479

Query: 474 DWEQAES-----------HHLWMQDQYPEFA----------VKDKLIGTACELVKK---- 508
           +  +A++             L++ D                +   + GTA +++K+    
Sbjct: 480 ERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIA 539

Query: 509 --AWRAKHQGVLQLWKDLTEGFACVVQE 534
             AW    Q  +++   + +     V +
Sbjct: 540 VDAWLQAEQPRVRMIMQVHDELVFEVHK 567



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 311 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 360

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 361 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 418

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 419 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 462

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 463 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 522

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 523 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 580

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 581 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 636

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 637 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 675

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 735

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 736 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 795

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 796 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 855

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 856 IHQLMENCTRID 867



 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 860


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 201/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPS 55
           D ET S   +           + GV AY         A+ + D P ++  DR  +   P 
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQIARDRALELLKP- 407

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACL 114
                L DE    V  N  ++R +     GI++    +  T + +     +        L
Sbjct: 408 ----LLEDENAHKVGQNLKYDRGILANY-GIELRGITF-DTMLESYILNSVAGRHDMDSL 461

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P             + +  L  +   +   G +ID  ++ K  E + Q   +
Sbjct: 506 LQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLNE 565

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 566 LEQKAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y       A+   
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMSAFGLARQLN 778

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490
                    +  + +       + +  +A++      +                      
Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAG 838

Query: 491 --EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W    Q  +++   + +     V +
Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E       SV   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLM 904


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 63  AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 117

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 118 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 174

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 175 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 220

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID ++++   + +     +L++   +L +     +     L++ L+    +
Sbjct: 221 SRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 279

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 280 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 338

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 339 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 373

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F   ++KV+
Sbjct: 374 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 433

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 434 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 493

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 494 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 553

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V E      R +  
Sbjct: 554 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 589


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/617 (17%), Positives = 202/617 (32%), Gaps = 109/617 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP-SDLLQY 60
           D ET S   +           A +   ++A +                   +P  ++L  
Sbjct: 358 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 407

Query: 61  LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L+    D+T++ +  N  F+R + +   GI++    +  T + +     + S      LA
Sbjct: 408 LKPILEDKTILKIGQNLKFDRGIMENE-GIELNGI-YFDTMLESYVLNSVSSRHDMDTLA 465

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                H T   E    IA   KG +     +  +A           Y   D + T  L +
Sbjct: 466 EKHLNHKTTTFE---EIAGKGKGQLTFNQIEVEQAT---------LYAAEDADITLLLHQ 513

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P             D E  L  +   +  +G  ID  ++    + I Q   +++++ 
Sbjct: 514 ALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET 573

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L       S     L+  LF    + ++  +     S  +   +  LA    L RL  
Sbjct: 574 FALAGQEFNLS-SPKQLQEILFEKLNLPIIKKTPKGAPST-NEEVLEALAHSHELPRLIL 631

Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               + KL     + L   V+S  +   T      + TGR S      QN+P        
Sbjct: 632 EHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP-------- 683

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA +G K+V AD + IE R++A ++ +   +
Sbjct: 684 ----------------VRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLL 727

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AFA G+DI+  T ++ F  P+D+V+ EQR   K +   L Y   A    +         
Sbjct: 728 DAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 787

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494
              +  + +       + +  + ++      +                          A+
Sbjct: 788 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 847

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              + GTA +++KKA  A           +       V     +    V  V    + + 
Sbjct: 848 NAPMQGTAADIIKKAMIAVD-------NWICHECPDDVHMIMQVHDELVFEVRESYLEKA 900

Query: 555 KRDVHIVLPSSRRLVYS 571
              +H ++ SS  L   
Sbjct: 901 NAMIHKLMESSMELAIP 917


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 185/563 (32%), Gaps = 111/563 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82
            ++A D+                  +        L   L D+    V  N  ++  +  +
Sbjct: 373 LSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 432

Query: 83  TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136
             GI++   ++  T + +   N +        LAL F +H          +GK  +  F 
Sbjct: 433 Y-GIEMKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FN 489

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185
           +  +                +    Y   D + T  L  RL               + E 
Sbjct: 490 QIEL----------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEM 533

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I   G  ID   +      IA   ++L++   ++ +    +      L+  L
Sbjct: 534 PLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAIL 592

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300
           F   G+ +V  +     S  +   + +LA D  L +L      + KL     + L + ++
Sbjct: 593 FEKMGLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMIN 651

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +      + TGR S      QN+P +                          
Sbjct: 652 PSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 686

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    
Sbjct: 687 EGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGV 746

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474
            ID+VS EQR   K +   L Y       AK            + ++ +       + + 
Sbjct: 747 SIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 806

Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                 + +S +   +      A+   + GTA +++KKA     
Sbjct: 807 TRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 866

Query: 515 Q-------GVLQLWKDLTEGFAC 530
           Q       G ++L   + +    
Sbjct: 867 QWIQEEGNGRVKLLMQVHDELVF 889


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/602 (17%), Positives = 200/602 (33%), Gaps = 113/602 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP-SDLLQY 60
           D ET S   +           A +   ++A +           +       +P +D+L  
Sbjct: 375 DTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDVLAA 424

Query: 61  LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L+    D+ ++ +  N  F+R + +   GI++    +  T + +     + +      LA
Sbjct: 425 LKPILEDKNILKIGQNLKFDRGIMENE-GIELNGIHF-DTMLESYVLNSVSNRHDMDTLA 482

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                H T   E    IA   KG +     +  +A           Y   D + T  L +
Sbjct: 483 EKHLNHKTTTFE---EIAGKGKGQLTFNQIEVEQAT---------LYAAEDADITLLLHQ 530

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P             D E  L  +   +  +G  ID  ++    + I Q   +++++ 
Sbjct: 531 ALYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKET 590

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L       S     L+  LF    + ++  +     S  +   + +LA    L RL  
Sbjct: 591 FALAGQEFNLS-SPKQLQEILFDKLQLPVIKKTPKGAPST-NEEVLEELAHSHELPRLIL 648

Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               + KL     + L   V+S  +   T      + TGR S      QN+P        
Sbjct: 649 EHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP-------- 700

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G K+V AD + IE R++A ++ +   +
Sbjct: 701 ----------------VRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLL 744

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AFA G+DI+  T ++ F  P+++V+ EQR   K +   L Y   A    +         
Sbjct: 745 DAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERREA 804

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + +                       +  S +   +      A+
Sbjct: 805 QRYMDLYFERYPGVLDYMERTRKQASEQGYVETLEGRRLYLPEINSKNAIRRKASEREAI 864

Query: 495 KDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543
              + GTA +++KKA  A               ++Q+  +L         E  +I   ++
Sbjct: 865 NAPMQGTAADIIKKAMIAVDNWICNECPADVHMIMQVHDELVFEVRESYLENANIMIHKL 924

Query: 544 AN 545
             
Sbjct: 925 ME 926


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 185/568 (32%), Gaps = 102/568 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + + D P +L D      + + L   L D  +  +  N  F+R +  +    D
Sbjct: 384 AAYLPLGHDYLDAPEQL-DL---HEVLAALKPLLEDANLPKIGQNLKFDRGVLARY---D 436

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSID 141
           +     +  ++L     N +        LA   L +     +   GK      F +  + 
Sbjct: 437 VALNGIVFDTMLESYVLNSVSGRHDMDSLADRHLGYKTTTFEEIAGKGKKQLTFNQIPL- 495

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190
                          +   +Y   D + T  L + + P  D            E  L  +
Sbjct: 496 ---------------EEAAKYAAEDADVTLRLHQVMYPQIDSVPTLKSVFQNIEMPLVPV 540

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID   + +    I     +L++   +L       +     L++ LF    
Sbjct: 541 LSRIERTGVLIDAQTLAEHSTEITARLGELEKAAYELAGEEFNLA-SPKQLQVILFEKLN 599

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
           + ++  +     S  +   + +LA +  L R+      + KL     + L + V+   + 
Sbjct: 600 LPVLKKTPNGAPST-NEEVLEELADNHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTKR 658

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P                                +R
Sbjct: 659 VHTSYHQAVTATGRLSSRDPNLQNIP------------------------VRNDEGRRIR 694

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ +   ++AFA G+DI+  T A+ F  P+++V+
Sbjct: 695 QAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLEAFAQGKDIHSATAAEVFGVPLEEVT 754

Query: 426 KEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW------ 475
            EQR   K +   L Y   A    +            +  + +       + +       
Sbjct: 755 SEQRRSAKAINFGLIYGMSAFGLSRQLSIPRGEAQRYMDLYFERYPGVLAYMERTRQQAA 814

Query: 476 ---------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA------WRAKH 514
                             +S +   +      A+   + GTA +++K A      W    
Sbjct: 815 EHGFVETLEGRRLYLPDIKSRNAMRRKASEREAINAPMQGTAADIIKLAMIAVDNWIVSE 874

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARR 542
           Q  +++   + +     V E    +A +
Sbjct: 875 QPNVRMIMQVHDELVFEVHESELATAEQ 902



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
            +     RRL   D+K   +    A+    RE           +Q  + DI+   M    
Sbjct: 818 FVETLEGRRLYLPDIKSRNAMRRKAS---EREAINAP------MQGTAADIIKLAMIAVD 868

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
                 +    +++ VHDE+V E  ++   +    +  LM
Sbjct: 869 NWIVSEQPNVRMIMQVHDELVFEVHESELATAEQKISELM 908


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D+  + V  N  F++ +  +  GID
Sbjct: 201 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 255

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 256 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 312

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D + T +L   L P             + E  L  + 
Sbjct: 313 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 358

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID +++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 359 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 417

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 418 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 476

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 477 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 511

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ ++  + AFA G+DI+  T A+ F +P++KV+
Sbjct: 512 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 571

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 572 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 631

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 632 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 691

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + ++Q+  +L       V +      R +  
Sbjct: 692 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 727


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/589 (17%), Positives = 199/589 (33%), Gaps = 99/589 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  V V   A +A     A+ ++D P +L    ++  +   L  +L 
Sbjct: 347 DTETTSLNYMQAELVGVSVAIEAGKAAYIPVAHDYEDAPEQL----DRDWVLEQLKPWLE 402

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE    V  +  ++  +       DI  +     ++L           +     +     
Sbjct: 403 DEGKAKVGQHLKYDANVLNNY---DITLRGIKFDTMLESYV-----FNSTGTRHDMDSLS 454

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
           +K      +  +F   +             ++       Y   D + T  L + ++P   
Sbjct: 455 SKFLGHSTV--KFEDIAGKGAKQKTFNQIDLE---QAAFYAAEDADITLRLHQAILPKLE 509

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                    SD E  L  +   +   G  ID D +      IA   ++++    +     
Sbjct: 510 KTPELVSVFSDIELPLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQEVEIKAHEEAGQE 569

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              S     L+  LF   G+ ++  +     S  +   + +LA++  L RL     ++ K
Sbjct: 570 FNLS-SPKQLQEILFEKQGLPVIKKTPKGQPST-AEPILQELAENYELPRLIMEHRSLAK 627

Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           L     + L E +   GR+  +      + TGR S      QN+P +             
Sbjct: 628 LKSTYTDKLPEMIQHTGRIHTSY-HQAVTATGRLSSTDPNLQNIPIRT------------ 674

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KLV AD + IE R++A ++ +   + AFA+ E
Sbjct: 675 ------------QEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLSQDKGLLDAFAHDE 722

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462
           D++  T A+ F   +D V+ EQR   K +   L Y       AK            +Q++
Sbjct: 723 DVHKATAAEVFEVAVDDVTAEQRRRAKAINFGLIYGMSAFGLAKQLGISRPEAQKYVQRY 782

Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501
            +      T+ +                       + ++ +  M+      A+   + G+
Sbjct: 783 FERYPGVRTYMETTRENAKEKGYVETIFGRRLYLPEIKARNAMMRQAAERTAINAPMQGS 842

Query: 502 ACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISA 540
           A +++K+A    H          + ++Q+  +L    A    E      
Sbjct: 843 AADIIKRAMIKMHNWLADTDLGVKMIMQVHDELIFEVAEKDLEAAQAKI 891



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
            RRL   ++K   + +  A     R            +Q  + DI+   M         T
Sbjct: 811 GRRLYLPEIKARNAMMRQAA---ERTAINAP------MQGSAADIIKRAMIKMHNWLADT 861

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
             G  +++ VHDE++ E  +    +    +  +M
Sbjct: 862 DLGVKMIMQVHDELIFEVAEKDLEAAQAKIIDIM 895


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 185/563 (32%), Gaps = 111/563 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82
            ++A D+                  +        L   L D+    V  N  ++  +  +
Sbjct: 372 LSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 431

Query: 83  TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136
             GI++   ++  T + +   N +        LAL F +H          +GK  +  F 
Sbjct: 432 Y-GIEMKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FN 488

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185
           +  +                +    Y   D + T  L  RL               + E 
Sbjct: 489 QIEL----------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEM 532

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I   G  ID   +      IA   ++L++   ++ +    +      L+  L
Sbjct: 533 PLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAIL 591

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300
           F   G+ +V  +     S  +   + +LA D  L +L      + KL     + L + ++
Sbjct: 592 FEKMGLPVVKKTPSGAPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMIN 650

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +      + TGR S      QN+P +                          
Sbjct: 651 PSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 685

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    
Sbjct: 686 EGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGV 745

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474
            ID+VS EQR   K +   L Y       AK            + ++ +       + + 
Sbjct: 746 SIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 805

Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                 + +S +   +      A+   + GTA +++KKA     
Sbjct: 806 TRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 865

Query: 515 Q-------GVLQLWKDLTEGFAC 530
           Q       G ++L   + +    
Sbjct: 866 QWIQEEGNGRVKLLMQVHDELVF 888


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/583 (18%), Positives = 197/583 (33%), Gaps = 118/583 (20%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  VG+     +A     A+ + D P +L DR         +L+ L 
Sbjct: 349 DLETTSLSYMEADIVGVGLALEPGEAAYIPLAHDYLDAPEQL-DR-------QAVLEALA 400

Query: 63  ----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALN 117
               D     +  N  ++  +  +             T + +      +       LAL 
Sbjct: 401 PLWADAGKAKIGQNLKYDISVLARHGHEVAGPL--HDTMLESYVLDSTATRHDMDSLALK 458

Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +    T   +   GK      F + ++                +    Y   DV+ T  L
Sbjct: 459 YLGEKTVSFEDIAGKGAKQLTFNQIAL----------------EQAAPYACEDVDITLRL 502

Query: 174 FKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            + L P           L + ER L  +   +   G  +D + + +    + +  ++L++
Sbjct: 503 HRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIRELEQ 562

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +L      +      L   LF    I ++  +     S  + + + +LA D  L ++
Sbjct: 563 RAHELAGREF-NLGSPKQLGEILFEEQKIPVIKKTPKGAPST-AEAVLEELALDYPLPKV 620

Query: 283 ASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                   KL     + L + V    GRL  +      + TGR S      QN+P +   
Sbjct: 621 IMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSY-HQAVTATGRLSSSDPNLQNIPIRT-- 677

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A  G +LV AD + IE R++A ++G+ 
Sbjct: 678 ----------------------EQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGDK 715

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452
             + AFA G DI+  T A+ F   +DKVS EQR   K +   L Y   A    +      
Sbjct: 716 GLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIER 775

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPE 491
           +   + + ++       + + +  +A++                      +   +     
Sbjct: 776 NQAQIYIDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRRQGAER 835

Query: 492 FAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
            A+   + GTA +++K+A                 V+Q+  +L
Sbjct: 836 TAINAPMQGTAADIIKRAMIDVDGWLADGDIDAMMVMQVHDEL 878



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNAT--KNGYDI----VLTVHDEIVSETPDTPYFS-VGTLCSLM 651
           Q  + DI+   M +        DI    V+ VHDE+V E  ++   + +  + + M
Sbjct: 843 QGTAADIIKRAMIDVDGWLADGDIDAMMVMQVHDELVFEVAESEVDAFMDQVKTRM 898


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/548 (19%), Positives = 193/548 (35%), Gaps = 85/548 (15%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D      MP +     L   L D  ++ +  N  ++  +F + LGI +           A
Sbjct: 395 DLAPG-QMPFEEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAPIDDTMLMSYA 452

Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSI-DSPPYDCTRAN-HVQ 154
              GL     +                 +  GK+ +  F K  + D+ PY    A+  ++
Sbjct: 453 MHAGLHGHGMDTLSERYLGHTPLPIKPLLGSGKSAVT-FDKVPMEDAVPYAAEDADVTLR 511

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            W+LF     R  E T ++++ L      ER L  +   +   G  +D D + ++    A
Sbjct: 512 LWKLFKPQLHR-AEVT-KVYETL------ERPLVPVLAQMERAGILVDRDTLSRMSNAFA 563

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI 270
           Q+   L+ DI +L      +      L   LF   G+D     +     T   +L     
Sbjct: 564 QKMAGLEADIHELAGETF-NVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLEDLAT 622

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  +L+    S       + L + V++  GR+       GA+ TGR +      QN
Sbjct: 623 EHDLARRVLDWRQLSKLKSTYTDALQDHVNANTGRVHTCYSIAGAA-TGRLASTDPNLQN 681

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A  GK LV  D + IE R+L
Sbjct: 682 IPIRS------------------------EEGRRIREAFVAPEGKVLVALDYSQIELRIL 717

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A IA  D   +AF  G+DI+  T ++ F+ P+D+++ E R   K +   + Y     G A
Sbjct: 718 AHIAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISGFGLA 777

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488
           +  +   +     + ++ +      T+ D  +A +                         
Sbjct: 778 RNLRIPRAEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINTPNIGAKGPQ 837

Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537
                  A+   + GTA +++++A     + +        LQ+  +L        ++   
Sbjct: 838 AGFAARAAINAPIQGTAADVIRRAMIRMPEAIADLPAKMLLQVHDELLFEVEKGAEDALI 897

Query: 538 ISARRVAN 545
            +AR V  
Sbjct: 898 AAAREVME 905


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 199 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 248

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 249 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 306

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 307 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 350

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 351 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 410

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 411 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 468

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 469 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 524

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 525 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 563

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 564 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 623

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 624 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 683

Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542
              A+   + GTA +++K+      AW    Q  +++   + +     V ++     A+R
Sbjct: 684 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 743

Query: 543 VANVPRLVMRRH 554
           +  +     R  
Sbjct: 744 IHQLMENCTRID 755



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 693 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 748


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/613 (19%), Positives = 209/613 (34%), Gaps = 125/613 (20%)

Query: 5   FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            ID ET S  P+           + GV AY         A+ + D P +L     +  + 
Sbjct: 338 SIDTETTSLIPMQAQLVGISLCCEPGVAAY------IPVAHHYQDVPQQL----SRELVL 387

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +  +L D +   V  N  ++  +F    G+++       T + +       S     L
Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHIFANH-GVNLRGI-VHDTLLESYVFESHRSHDMDSL 445

Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           AL   +      +E  GK      F +  I                    EY   D + T
Sbjct: 446 ALRHLNRKTITFQEVCGKGASQIGFEQVEIG----------------RATEYAAEDADIT 489

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L +R+ P               E    ++ Q I   G  ID DL+ K    + +   +
Sbjct: 490 LQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRMLE 549

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           ++++  +L +    +      +    F    + +V  +     S      + +LA+D  L
Sbjct: 550 IEQNAYELAEQPF-NLNSPKQIGEIFFEKLKLPVVKKTPSGSPST-DEEVLQKLAEDYPL 607

Query: 280 NRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L + +    GR+         + TGR +      QN+P +
Sbjct: 608 PKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYA-QAVAVTGRLASNDPNLQNIPIR 666

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G  +V AD + IE R++A I+
Sbjct: 667 ------------------------NAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHIS 702

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
           G++  ++AFA+GEDI+  T A+ F      V  EQR   KV+   L Y       A    
Sbjct: 703 GDENMLQAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAFGLAGNLG 762

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488
              S     ++++         + D  + E+             LW+          +  
Sbjct: 763 IERSAAQSYIERYFHRFAGVKRYMDETRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQG 822

Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV----VQE 534
               A+   + GTA +L+K A  A          + + ++Q+  +L           V+E
Sbjct: 823 AERAAINAPMQGTAADLIKLAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVRE 882

Query: 535 GGSISARRVANVP 547
                 R VA + 
Sbjct: 883 KLPELMRHVAQLK 895



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + D++   M          K    +++ VHDE+V E P+T    V   L  LM
Sbjct: 833 QGTAADLIKLAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVREKLPELM 888


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 108/602 (17%), Positives = 202/602 (33%), Gaps = 115/602 (19%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
                D ET S       +  V       +A     A+ +   P +L    E+  + + L
Sbjct: 332 KTFSFDTETTSLNYMEAEIVGVSFAVEPGKAAYVPVAHDYMGAPEQL----ERDKVLAAL 387

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA- 115
              L D     +  N  ++  +     G+ +       T + +       +      LA 
Sbjct: 388 KPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIA-EDTMLESYVLNSTANRHDMDTLAS 445

Query: 116 --LNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             L       +   GK      F + S+                +  G Y   D + T +
Sbjct: 446 KHLGRETIHFEDIAGKGAKQLTFNQISL----------------EQAGPYAAEDADITLQ 489

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L   L P             D E  L  +   +  RG  +D   +    + +A+   +L+
Sbjct: 490 LHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAERMLELE 549

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           E+  +       +      L+   +   G D++  +     S  +   + +LA+   L R
Sbjct: 550 EEAYEKAGQKF-NLGSPKQLQEIFYEKLGFDIIKKTPKGQPST-AEPVLQELAEKYELPR 607

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L E ++   GR+  + Q    + TGR S      QN+P    
Sbjct: 608 VLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQ-QAVAATGRLSSSDPNLQNIP---- 662

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G KL+ AD + IE R++A ++G+
Sbjct: 663 --------------------VRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLSGD 702

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           +  +KAF+ G D++  T A+ FN   D+VS EQR   K +   L Y       A+     
Sbjct: 703 EGLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGMSAFGLARQIHVE 762

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
            S     + ++ +       + +  +AE+                      +  +Q    
Sbjct: 763 RSEAQSYIDKYFERYPGVLNYMNRIRAEAQDTGYVETLFGRRLYLPDIRSSNRNLQQAAE 822

Query: 491 EFAVKDKLIGTACELVKKAWRAKH-----------QGVLQLWK----DLTEGFACVVQEG 535
             A+   + GTA +++K+A  A             + ++Q+      ++ E     V+E 
Sbjct: 823 RTAINAPMQGTAADIIKRAMLAVDAWLEGDSAPPAKMIMQVHDELILEVEESAVEAVKEK 882

Query: 536 GS 537
            +
Sbjct: 883 LT 884



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619
            RRL   D++     L  A     R            +Q  + DI+   M          
Sbjct: 802 GRRLYLPDIRSSNRNLQQAA---ERTAINAP------MQGTAADIIKRAMLAVDAWLEGD 852

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652
                 +++ VHDE++ E  ++   +V   L  +M+
Sbjct: 853 SAPPAKMIMQVHDELILEVEESAVEAVKEKLTQIMS 888


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/574 (17%), Positives = 203/574 (35%), Gaps = 94/574 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +++++   L   L DE V+ V  N  F+  +  +  GI+
Sbjct: 384 AAYLPVAHDYLDAPAQL----DRASVLERLKLLLEDEKVLKVGQNLKFDMGVLARY-GIN 438

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        LA  +  H T   E   GK      F + ++  
Sbjct: 439 LRGIAY-DTMLESYVLDSVGGRHDMDNLADRYLGHKTITFEEIAGKGKNQLTFNQIALAQ 497

Query: 143 PP------YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                    D T   H+  W    +             + L   ++ +  L  +   I  
Sbjct: 498 AALYAAEDADVTLRLHLAMWPQLKQSA-----------ELLRVFNEIDMPLVPVLSHIER 546

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  ID  ++    + + +   +L+    +L             L+  L+    + ++  
Sbjct: 547 TGVLIDPAILSVHSQELTKRLGELEIQAHELAGEPFNLV-SLKQLQAILYEKQKLPVLKK 605

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQ 310
           + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+  +  
Sbjct: 606 TPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSY- 663

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P +   +                          +R   IA
Sbjct: 664 HQAVTATGRLSSSDPNLQNIPVRNDED------------------------RRIRQAFIA 699

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G ++V AD + IE R++A ++ +   +KAFA G+DI+  T A+ F  P+DKV+ EQR 
Sbjct: 700 PEGYRIVAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRR 759

Query: 431 IGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----------- 475
             K +   L Y       A+            + ++ +       + +            
Sbjct: 760 SAKAINFGLIYGMSAFGLARQLGVPRGEAQRYMDRYFERYPGVLDYMERTRQQAAEQGYV 819

Query: 476 ----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGVL 518
                       A S +   +      A+   + GTA +++K+A        + + Q ++
Sbjct: 820 TTLDGRRLYLPDARSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWIQEQGQPLV 879

Query: 519 QLWKDLTEGFACVVQEGGS-ISARRVANVPRLVM 551
           ++   + +     V E     S++R+  +    M
Sbjct: 880 RMIMQVHDELVFEVHESVIDASSQRIRELMEGSM 913



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 17/95 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----N 620
            RRL   D +              R            +Q  + DI+   M          
Sbjct: 824 GRRLYLPDARSSN---GMRRKAAERAAINAP------MQGTAADIIKRAMIEVDAWIQEQ 874

Query: 621 GYDIV---LTVHDEIVSETPDTP-YFSVGTLCSLM 651
           G  +V   + VHDE+V E  ++    S   +  LM
Sbjct: 875 GQPLVRMIMQVHDELVFEVHESVIDASSQRIRELM 909


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/583 (18%), Positives = 189/583 (32%), Gaps = 101/583 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       +  V     A +A      + +   PV+L     ++ +   L   L 
Sbjct: 347 DTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQL----SEAVVLGKLKPLLE 402

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFSE 120
           D T + V  N  ++R +    L  DI  +     T + +      +S      LA  +  
Sbjct: 403 DPTCLKVGQNLKYDRNVL---LNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLG 459

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-- 178
             T   E            I          N ++  +    Y   D + T  L + L   
Sbjct: 460 VETTSFE-----------DIAGKGVKQLTFNQIEL-EQAAPYAAEDADITLRLHQTLWGQ 507

Query: 179 ---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                      S+ E  L  +   +   G  ID  L+ +  + I     +L++   +L  
Sbjct: 508 LEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELEKQAHELAG 567

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                S     L   LF   G+ ++  +     S      + +LA+   L +L      +
Sbjct: 568 QEFNLS-SPKQLGEILFTKLGLPIIKKTPKGAPSTAEE-VLAELAETYELPQLLMEHRGL 625

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L   +    GR+  +      + TGR S      QN+P            
Sbjct: 626 AKLKSTYTDKLPLMIKPQTGRVHTSY-HQAVAATGRLSSSDPNLQNIP------------ 672

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   I S G KLV AD + IE R++A ++G+   + AFA
Sbjct: 673 ------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFA 720

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+DI+  T A+ F   ID V+ + R   K +   L Y       AK      +     +
Sbjct: 721 EGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYM 780

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
             + +       + +                         +S +  ++      A+   +
Sbjct: 781 DLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKAAERAAINAPM 840

Query: 499 IGTACELVKKAWRAKHQGVL-------QLWKDLTEGFACVVQE 534
            GTA +++K+A       +        ++   + +     ++E
Sbjct: 841 QGTAADIIKRAMINVDSWIRGIEDESIRMLMQVHDELVFEIRE 883


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/561 (18%), Positives = 191/561 (34%), Gaps = 100/561 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  +  +  N  F+  +F +  GID+    +  T +L+ T           LA 
Sbjct: 412 LKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNMDDLAK 469

Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   +   GK      F +  +                +  GEY   D + T +
Sbjct: 470 RYLGHQTISFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 513

Query: 173 L----FKRLIPLSD-------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L    +++L P           E  L  +   +   G  ID D +      I +    L+
Sbjct: 514 LQQVLWQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERLTALE 573

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                L       +  T  L+  LF   G+ ++  +   + S  +   + +LA    L +
Sbjct: 574 MQAHTLAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGVPST-NEEVLEELAYSHELPK 631

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L + V+   GR+  +      + TGR S      QN+P +  
Sbjct: 632 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 688

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   +R   IA +G K++ AD + IE R++A ++ +
Sbjct: 689 ----------------------NEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 726

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y       ++     
Sbjct: 727 QGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGIS 786

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            +     +  + Q   +  TF                         +  S +   +    
Sbjct: 787 RADAQRYMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAE 846

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A+   + GTA + +K+A      G+ +   D        +     +    V  V    
Sbjct: 847 RVAINAPMQGTAADTIKRAMIKLD-GITRDDPD--------IHMIMQVHDELVFEVRSEK 897

Query: 551 MRRHKRDVHIVLPSSRRLVYS 571
           +      +   + ++  LV  
Sbjct: 898 IAFFSDLIKQHMEAAAELVVP 918


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 112/593 (18%), Positives = 209/593 (35%), Gaps = 110/593 (18%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ID ET +       L  + +    + A     A+   D   +L     +  + + L   L
Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEDNASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
            +  +  +  N  ++  + K   GI +   R+  T + +              LAL +  
Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436

Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + T   +   GK     RF +  ++                  G Y   D + T  L  +
Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480

Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+++ V+L
Sbjct: 481 LYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L+  LF    + +V  +  T +   + S + +LA D  L  +     
Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ KL     + L + ++       T      + TGR S      QN+P +         
Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA  G  ++ AD + IE R++A ++ +D  ++AF
Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANG DI+  T ++ F T ++ VSKEQR   K +   L Y       AK            
Sbjct: 695 ANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  + +       + +  + ++H                     +L  Q      A+   
Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814

Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLT-EGFACVVQEGGSI 538
           + GTA +++KK   A             + ++Q+  +L  E     V+E  +I
Sbjct: 815 MQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVHDELVFEVRKEAVEECHAI 867


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 113/593 (19%), Positives = 209/593 (35%), Gaps = 110/593 (18%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ID ET +       L  + +    E A     A+   D   +L     +  + + L   L
Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEENASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
            +  +  +  N  ++  + K   GI +   R+  T + +              LAL +  
Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436

Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + T   +   GK     RF +  ++                  G Y   D + T  L  +
Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480

Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+++ V+L
Sbjct: 481 LYPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L+  LF    + +V  +  T +   + S + +LA D  L  +     
Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ KL     + L + ++       T      + TGR S      QN+P +         
Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA  G  ++ AD + IE R++A ++ +D  ++AF
Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANG DI+  T ++ F T ++ VSKEQR   K +   L Y       AK            
Sbjct: 695 ANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  + +       + +  + ++H                     +L  Q      A+   
Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814

Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLT-EGFACVVQEGGSI 538
           + GTA +++KK   A             + ++Q+  +L  E     V+E  +I
Sbjct: 815 MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAI 867


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 107/567 (18%), Positives = 195/567 (34%), Gaps = 113/567 (19%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ +   P +L    ++  +   L   L D+ +  V  N  ++  +
Sbjct: 381 GVAAY------VPVAHDYIGAPEQL----DRQWVLEQLKPLLEDDAIAKVGQNLKYDASV 430

Query: 80  FKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSEH-----LTKMEEGKALI 132
             +    DI  K     ++LA    N +        LAL F +H          +GKA +
Sbjct: 431 LARY---DIELKGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKAQL 487

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LS 181
             F +  +                +    Y   D + T  L +RL               
Sbjct: 488 T-FNQIDL----------------EQASPYAAEDADVTFRLHQRLNAELEKNEALNRIYQ 530

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   I   G  ID  L+    + IA    +L++   ++       S     L
Sbjct: 531 DIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLDELEQKAFEIAGQEFNLS-SPKQL 589

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
           +   F   G+ ++  +     S  +   + +LA D  L +L      + KL     + L 
Sbjct: 590 QTIFFEKMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLP 648

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + ++   GR+  +      + TGR S      QN+P +                      
Sbjct: 649 KMINPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR---------------------- 685

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA +G K++  D + IE R++A ++G+   + AF NG+DI+  T A+
Sbjct: 686 --NEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDAFKNGKDIHAATAAE 743

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471
                ID+V+ EQR   K +   L Y   A    K            +  + +       
Sbjct: 744 IIGVDIDQVTSEQRRRAKAINFGLIYGMSAFGLSKQLGIPRGEAQQYMDTYFERYPGVMQ 803

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                       + +S +   +      A+   + GTA +++KKA 
Sbjct: 804 YMEDTRSLAAEKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAM 863

Query: 511 -------RAKHQGVLQLWKDLTEGFAC 530
                  +A+ +G ++L   + +    
Sbjct: 864 LLVDEWVQAEGEGKVKLLMQVHDELVF 890


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/589 (18%), Positives = 200/589 (33%), Gaps = 114/589 (19%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  +G+   A +A     A+ + D P +L DR         +L  L+
Sbjct: 355 DLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQL-DRAS-------VLAALK 406

Query: 63  ----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116
               D     +  N  ++  +  +    DI     +  ++LA    N   +      LAL
Sbjct: 407 PLWEDPAKAKIGQNLKYDISVLARY---DIEVAGRLEDTMLASYVLNATATRHDMDSLAL 463

Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +    T   E   GK      F + ++                +    Y   DV+ T  
Sbjct: 464 KYLGEKTISFEEIAGKGAKQLTFDQIAL----------------EQAAPYACEDVDITLR 507

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L P           L D E  L  +   +   G  +D + +      + +  ++L+
Sbjct: 508 LHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRLRELE 567

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L      +      L   LF    I ++  +     S  + + + +LA D  L +
Sbjct: 568 TRAYELAGREF-NLGSPKQLGEILFDELKIPVIKKTPKGAPST-AEAVLEELALDYPLPK 625

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +        KL     + L + V++  R   T      + TGR S      QN+P +   
Sbjct: 626 VIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIRT-- 683

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A  G ++V AD + IE R++A ++G+ 
Sbjct: 684 ----------------------EEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDK 721

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452
             + AFA G DI+  T A+ F   +D VS EQR   K +   L Y   A    +      
Sbjct: 722 GLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIER 781

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPE 491
           +     + ++       + F +  +A+                     + +   +     
Sbjct: 782 NQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAER 841

Query: 492 FAVKDKLIGTACELVKKAW----RAKHQGVLQLW--KDLTEGFACVVQE 534
            A+   + GTA +++K A     R   +G    W    + +     V+E
Sbjct: 842 TAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKE 890


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/559 (17%), Positives = 186/559 (33%), Gaps = 107/559 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  +   L   L D     V  N  ++  +  +    D
Sbjct: 379 AAYVPVAHDYLDAPEQL----DRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY---D 431

Query: 88  IPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSI 140
           I  K     T + +   N +        LAL F +H          +GK  +  F +  +
Sbjct: 432 IELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIEL 490

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189
                           +    Y   D + T  L  RL               + E  L  
Sbjct: 491 ----------------EQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVP 534

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   I   G  ID   +      I     +L++   ++ +    +      L+  LF   
Sbjct: 535 VLSRIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIAEQEF-NMNSPKQLQAILFEKM 593

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-G 303
           G+ +V  +     S  +   + +LA D  L +L      + KL     + L + ++   G
Sbjct: 594 GLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPTTG 652

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P +                          A   
Sbjct: 653 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEAGRR 687

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I++
Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDIEQ 747

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           VS EQR   K +   L Y       AK            + ++ +       + +     
Sbjct: 748 VSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRST 807

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515
                             + +S +   +      A+   + GTA +++KKA     Q   
Sbjct: 808 AADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQ 867

Query: 516 ----GVLQLWKDLTEGFAC 530
               G ++L   + +    
Sbjct: 868 EEGNGRVKLLMQVHDELVF 886


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 187/561 (33%), Gaps = 100/561 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  +  V  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 464 LKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNMDDLAK 521

Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   +   GK      F +  +                +  GEY   D + T +
Sbjct: 522 RYLGHQTIGFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 565

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L                 E  L  +   +   G  ID D +      I +    L+
Sbjct: 566 LQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALE 625

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L       +  T  L+  LF   G+ ++  +     S  +   + +LA    L +
Sbjct: 626 MQAHELAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELAYSHELPK 683

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L + V+   GR+  +      + TGR S      QN+P +  
Sbjct: 684 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 740

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA +G K++ AD + IE R++A ++ +
Sbjct: 741 ----------------------NEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 778

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y       ++     
Sbjct: 779 AGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGIS 838

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            +     +  + Q      TF                         +  S +   +    
Sbjct: 839 RADAQRYMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAE 898

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A+   + GTA +++K+A     + + +   D        +     +    V  V    
Sbjct: 899 RVAINAPMQGTAADIIKRAMIKLDE-ITRDDPD--------IHMIMQVHDELVFEVRSEK 949

Query: 551 MRRHKRDVHIVLPSSRRLVYS 571
           +      +   + ++  LV  
Sbjct: 950 IAFFSDLIKQHMEAAAELVVP 970


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 105/577 (18%), Positives = 195/577 (33%), Gaps = 106/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L DRT+  A+       L DE ++ +  N  F++ + ++    D
Sbjct: 381 AAYLPLAHDYLDAPEQL-DRTKVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I  +     ++L       +        LA  +  H T   E   GK      F + ++ 
Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLTFNQIAL- 492

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190
                          +  G Y   D + T  L ++L                 +  L  +
Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQKLWGKLQPHADLCQVFQTIDMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  ++ +  + +     +L+    +L       S  T  L+  L+    
Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTIRLAELETQAYELAGEEFNLS-STKQLQGILYEKQK 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
           + ++  +     S  +   + +LA D  L +L      + KL     + L   ++   + 
Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P                                +R
Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F   +DKV+
Sbjct: 692 QAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDKVT 751

Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471
            EQR   K +   L Y   A              + +  +       +Q + +  +  + 
Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811

Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------- 512
              +               S +   +      A+   + GTA +++KKA  A        
Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD 871

Query: 513 --KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
             K + ++Q+  +L       V E      + +    
Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKALMEGC 908



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619
            RRL   D+    +    A     R            +Q  + DI+ + M          
Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKD 871

Query: 620 -NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
                +++ VHDE+V E  D+    S+  + +LM
Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKALM 905


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 193/572 (33%), Gaps = 107/572 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++S + + L   L DE  + V  N  F++ L  +  GI+
Sbjct: 385 AAYLPVAHDYLDAPAQL----DRSWVLTTLKPLLEDEQALKVGQNLKFDKSLLARY-GIE 439

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        L+  +  H T   E   GK      F + ++  
Sbjct: 440 LRGIAF-DTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 496

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +    Y   D + T +L   + P               E  L  + 
Sbjct: 497 --------------EQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLPIL 542

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  ID  ++    + +     +L++   +L +     +     L+  L+    +
Sbjct: 543 SRIERTGVLIDQSILATHSQELTIRLTELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 601

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+
Sbjct: 602 PILKKTPGGAAST-NEEVLAELALDYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISGRV 660

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 661 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 695

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  ++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+
Sbjct: 696 QAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVT 755

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            EQR   K +   L Y       A+            +  + +       + +  + ++ 
Sbjct: 756 TEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 815

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GTA +++K+A  A        
Sbjct: 816 DQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 875

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISAR 541
                + ++Q+  +L       V E  + +  
Sbjct: 876 AEPLVRVIMQVHDELVFEVHESVVESATQTIC 907



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 17/97 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619
            RRL   D+    +          RE           +Q  + DI+   M          
Sbjct: 825 GRRLYLPDIHSRNA---NRRKAAEREAINAP------MQGTAADIIKRAMIAVDAWLQQQ 875

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653
                 +++ VHDE+V E  ++   S   T+C LM +
Sbjct: 876 AEPLVRVIMQVHDELVFEVHESVVESATQTICDLMEQ 912


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 112/593 (18%), Positives = 209/593 (35%), Gaps = 110/593 (18%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ID ET +       L  + +    + A     A+   D   +L     +  + + L   L
Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEDNASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
            +  +  +  N  ++  + K   GI +   R+  T + +              LAL +  
Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLQGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436

Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + T   +   GK     RF +  ++                  G Y   D + T  L  +
Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480

Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+++ V+L
Sbjct: 481 LYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L+  LF    + +V  +  T +   + S + +LA D  L  +     
Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ KL     + L + ++       T      + TGR S      QN+P +         
Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA  G  ++ AD + IE R++A ++ +D  ++AF
Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANG DI+  T ++ F T ++ VSKEQR   K +   L Y       AK            
Sbjct: 695 ANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  + +       + +  + ++H                     +L  Q      A+   
Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814

Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLT-EGFACVVQEGGSI 538
           + GTA +++KK   A             + ++Q+  +L  E     V+E  +I
Sbjct: 815 MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAI 867


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 108/560 (19%), Positives = 188/560 (33%), Gaps = 102/560 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L D T        L   L  E    V  N  ++R +     GI+
Sbjct: 390 AAYLPLAHDYIDAPKQL-DLT---TTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIE 444

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSP 143
           +   ++  T + +             LAL +  H     E   GK      F + SI   
Sbjct: 445 LKGIKF-DTMLESYVLDSTGRHDMDTLALKYLGHQCISFEEIAGKGKKQLPFNQISIIEA 503

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQ 192
                             Y   D + T  L  +L              ++ E  L  +  
Sbjct: 504 A----------------PYAAEDADVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLS 547

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I   G  ID DL+ K    I +   +L+    +        S     L+  L+    + 
Sbjct: 548 DIERGGVEIDSDLLTKQSAEIGKRLLELEALAYEEAGKPFNLS-SPKQLQTILYDELELP 606

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLR 306
           ++  +     S      + +LA    L +L      + KL     + L + V+   GRL 
Sbjct: 607 VLKKTPKGAPSTAEE-VLQELALTYPLPKLIIEHRGLSKLKSTYTDKLPKMVNEKTGRLH 665

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            + Q    + TGR S      QN+P +                              +R 
Sbjct: 666 TSYQ-QAVTVTGRLSSTDPNLQNIPIRS------------------------AEGRRIRQ 700

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             IA  G K+V AD + IE R++A ++ +   + AF+ G+DI+  T ++ F+ P+D+V+ 
Sbjct: 701 AFIAQPGYKIVAADYSQIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDEVTT 760

Query: 427 EQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-------- 474
           EQR   K +   L Y       AK          L + ++         + +        
Sbjct: 761 EQRRSAKAINFGLIYGMSAFGLAKQLNIGRHEAQLYMDKYFNRYPGVLIYMEDTRSLANE 820

Query: 475 -------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR-------AKH 514
                            +S +  ++      A+   + GTA +++KKA          K 
Sbjct: 821 KAYVETILGRRLQLPNIKSRNGMLKKAAERAAINAPMQGTAADIIKKAMIDMADWIAQKS 880

Query: 515 QGVLQLWKDLTEGFACVVQE 534
            G +Q+   + +     ++E
Sbjct: 881 PGSVQMLMQVHDELVFSIKE 900


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 198/595 (33%), Gaps = 119/595 (20%)

Query: 4   LFIDIET----RSPQPLPKV------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM 53
           +  D ET         L  V      GV AY         A+ + D P +L    E+  +
Sbjct: 350 IAFDTETDSLDYMEANLVGVSFAIEEGVAAY------VPVAHDYMDAPKQL----ERDWV 399

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNA 112
              L   L D +   V  N  ++  +  +  GID+   ++  T + +   N +       
Sbjct: 400 LEQLKPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIKF-DTMLASYVYNSVAGKHDMD 457

Query: 113 CLALNFSEHLTKMEEGKALIAR----FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL F +H     E  A   +    F +  +                +    Y   D +
Sbjct: 458 SLALRFLQHSCISFEQVAGKGKKQLTFNQIDL----------------EQAAPYAAEDAD 501

Query: 169 ATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L +RL               D E  L  +   I   G  ID   +    + IA   
Sbjct: 502 VTFRLHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRL 561

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L++    +      +      L+  LF   G+ +V  +     S  +   + +LA D 
Sbjct: 562 DALEQQAFDIAGQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPST-NEEVLQELALDY 619

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L         + KL     + L + ++   GR+  +      + TGR S      QN+P
Sbjct: 620 PLPEKILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSY-HQAVTATGRLSSTDPNLQNIP 678

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   +A +G K++  D + IE R++A 
Sbjct: 679 IR------------------------NEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAH 714

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
           ++G+   ++AF  G+DI+  T A+     I +V+ EQR   K +   L Y       AK 
Sbjct: 715 LSGDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIYGMSAFGLAKQ 774

Query: 448 FKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY----------------- 489
                      +  + +         ED     +   +++  +                 
Sbjct: 775 LGIPRGEAQQYMDTYFERYPGVMQYMEDTRSIAAEQGYVETIFGRRLHLPEIQSRNGMRR 834

Query: 490 ---PEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534
                 A+   + GTA +++KKA        + + QG ++L   + +     V+E
Sbjct: 835 KAAERAAINAPMQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQVHDELVFEVEE 889


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 113/573 (19%), Positives = 200/573 (34%), Gaps = 101/573 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +++A+ + L   L D++   V  N  ++R + K     D
Sbjct: 379 AAYLPVAHDYLDAPEQL----DRAAVLAQLKPLLEDDSAWKVGQNLKYDRGVLKNY---D 431

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I        ++L     N +        LA  +  H T   +    IA   K  +     
Sbjct: 432 IELAGIKFDTMLESYILNSVVGKHDMDSLAARWLNHKTVTFQ---EIAGKGKNQLTFNQI 488

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTI 194
              +A+H         Y   D + T +L  ++ P  +            E  L  +   I
Sbjct: 489 ALEQASH---------YAAEDADVTLQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRI 539

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  ID  ++ +  + +     +L+    +L       S  T  L++ LF   GI   
Sbjct: 540 ERNGVLIDQAILAQHSKELTARLAELELKAHELAGEPFNLS-STKQLQVILFEKQGIKPT 598

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308
             + G   S  S   + +LA D  L ++      + KL     + L   ++   GR+  +
Sbjct: 599 KKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPLSGRVHTS 657

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 + TGR S      QN+P                                +R   
Sbjct: 658 Y-HQAVTATGRLSSADPNLQNIP------------------------VRNDEGRRIRQAF 692

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A+ G ++V AD + IE R++A ++ +   + AFA GEDI+  T ++ F  P+DKVS EQ
Sbjct: 693 VAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQ 752

Query: 429 RAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------- 475
           R   K +   L Y   A    +     A      +  + +       + +          
Sbjct: 753 RRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASKG 812

Query: 476 --EQAESHHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRAKH--------- 514
             E  E   LW+          +      A+   + GTA +++K+A  A           
Sbjct: 813 YVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDAWLEQQNDN 872

Query: 515 --QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
             + ++Q+  +L         E  S   R +  
Sbjct: 873 SVRMIMQVHDELVFEVKAEAVEAASQKIRALME 905



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M            N   +++ VHDE+V E       +    + +LM
Sbjct: 848 QGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQVHDELVFEVKAEAVEAASQKIRALM 904


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 102/561 (18%), Positives = 189/561 (33%), Gaps = 100/561 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  +  +  N  F+  +F +  GID+    +  T +L+ T           LA 
Sbjct: 412 LKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNMDDLAK 469

Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   +   GK      F +  +                +  GEY   D + T +
Sbjct: 470 RYLGHQTISFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 513

Query: 173 LFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L    +            E  L  +   +   G  ID D +      I +    L+
Sbjct: 514 LQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERLTALE 573

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                L       +  T  L+  LF   G+ ++  +     S  +   + +LA    L +
Sbjct: 574 MQAYALAGQPFNLA-STKQLQEILFGKLGLPVLQKTPKGAPST-NEEVLEELAYSHELPK 631

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L + V+   GR+  +      + TGR S      QN+P +  
Sbjct: 632 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 688

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   +R   IA +G K++ AD + IE R++A ++ +
Sbjct: 689 ----------------------NEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 726

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y              
Sbjct: 727 QGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFPARLGIS 786

Query: 452 ASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQDQY--------------------P 490
            +     +  + Q   +  TF  D  +      +++  +                     
Sbjct: 787 RADAQRYMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGTE 846

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A+   + GTA +++K+A      G+ +   D        +     +    V  V    
Sbjct: 847 RVAINAPMQGTAADIIKRAMIKLD-GITRDDPD--------IHMIMQVHDELVFEVRSEK 897

Query: 551 MRRHKRDVHIVLPSSRRLVYS 571
           +      +   + ++  LV  
Sbjct: 898 IAFFSDLIKQHMEAAAELVVP 918


>gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening
           disease-associated, Peptide, 207 aa]
          Length = 207

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 188/205 (91%), Positives = 193/205 (94%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           SKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQYL
Sbjct: 3   SKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYL 62

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F EH
Sbjct: 63  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEH 122

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
           LTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL+
Sbjct: 123 LTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLN 182

Query: 182 DGERDLWLLDQTINDRGYRIDLDLV 206
             ER LWLLDQ INDRGYRIDLDLV
Sbjct: 183 PEERTLWLLDQEINDRGYRIDLDLV 207


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 185/563 (32%), Gaps = 111/563 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82
            ++A D+                  +        L   L D+    V  N  ++  +  +
Sbjct: 373 LSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 432

Query: 83  TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136
             GI++   ++  T + +   N +        LAL F +H          +GK  +  F 
Sbjct: 433 Y-GIEMKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FN 489

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185
           +  +                +    Y   D + T  L  RL               + E 
Sbjct: 490 QIEL----------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEM 533

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I   G  ID   +      IA   ++L++   ++ +    +      L+  L
Sbjct: 534 PLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAIL 592

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300
           F   G+ +V  +     S  +   + +LA D  L +L      + KL     + L + ++
Sbjct: 593 FEKMGLPVVKKTPSGTPST-NEEVLHELALDYPLPKLILEYRGLAKLKSTYTDKLPKMIN 651

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +      + TGR S      QN+P +                          
Sbjct: 652 PSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 686

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+    
Sbjct: 687 EGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGV 746

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474
            ID+VS EQR   K +   L Y       AK            + ++ +       + + 
Sbjct: 747 SIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 806

Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                 + +S +   +      A+   + GTA +++KKA     
Sbjct: 807 TRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 866

Query: 515 Q-------GVLQLWKDLTEGFAC 530
           Q       G ++L   + +    
Sbjct: 867 QWIQEEGNGRVKLLMQVHDELVF 889


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 99/528 (18%), Positives = 186/528 (35%), Gaps = 91/528 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLA 115
           L   L DE+   V  N  ++  +  +  G+++   R   T + +   N +        LA
Sbjct: 1   LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L F +H     E  A   +  + + +             A +   +Y   D + T  L +
Sbjct: 59  LRFLQHSCISFEQVAGKGK-NQLTFNQI-----------ALEEAAQYAAEDADVTLRLHQ 106

Query: 176 RLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           R+ PL +            E  L  +   I   G  ID  L+    + IA    +L+++ 
Sbjct: 107 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 166

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L       S     L+  LF    + ++  +     S  +   + +LA D  L ++  
Sbjct: 167 YELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLI 224

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++   GR+  +      + TGR S      QN+P       
Sbjct: 225 EYRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 276

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A +G K++  D + IE R++A ++G+   
Sbjct: 277 -----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 319

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF +G+DI+  T A+    PID+VS EQR   K +   L Y       AK        
Sbjct: 320 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGE 379

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               + ++ +       + +                       +  S +   +      A
Sbjct: 380 AQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAA 439

Query: 494 VKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534
           +   + GTA +++KKA          +  G ++L   + +     V+E
Sbjct: 440 INAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKE 487


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 107/565 (18%), Positives = 191/565 (33%), Gaps = 112/565 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   +   G +ID  ++ K  E I     +L
Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L   ++   GR+  +      + TGR S      QN+P   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y   A    +    
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490
                   +  + +       + +  +A++      +                       
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839

Query: 491 -EFAVKDKLIGTACELVKKAWRAKH 514
              A+   + GTA +++K+A  A  
Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVD 864


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 111/578 (19%), Positives = 199/578 (34%), Gaps = 111/578 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +++A+ + L   L DE    V  N  ++R + K     D
Sbjct: 379 AAYLPVAHDYLDAPDQL----DRAAVLAQLKPLLEDENAWKVGQNLKYDRGVLKNY---D 431

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT-----KMEEGKALIARFCKGSI 140
           I        ++L     N +        LA  +  H T        +GK  +  F + ++
Sbjct: 432 IELAGIKFDAMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLT-FNQIAL 490

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWL 189
           +   +                Y   D + T +L  ++ P  +            E  L  
Sbjct: 491 EQAAH----------------YAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLT 534

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   I   G  ID  ++ +  + +     +L+    +L       S  T  L++ LF   
Sbjct: 535 VISRIERNGVLIDQSILAQHSKELTARLAELELKAHELAGEPFNLS-STKQLQVILFEKQ 593

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303
           GI     + G   S  S   + +LA D  L ++      + KL     + L   ++   G
Sbjct: 594 GIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPISG 652

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P                                
Sbjct: 653 RVHTSY-HQAVTATGRLSSADPNLQNIP------------------------VRNDEGRR 687

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A+ G ++V AD + IE R++A ++ +   + AFA GEDI+  T ++ F   +DK
Sbjct: 688 IRQAFVAAKGHRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALDK 747

Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW---- 475
           VS EQR   K +   L Y   A    +     A      +  + +       + +     
Sbjct: 748 VSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQL 807

Query: 476 -------EQAESHHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRA------ 512
                  E  E   LW+          +      A+   + GTA +++K+A  A      
Sbjct: 808 AASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDEWLE 867

Query: 513 -----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                  + ++Q+  +L         E  S   R +  
Sbjct: 868 QQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALME 905



 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 17/119 (14%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
             V        +    + ++     RRL   D+K   +          R           
Sbjct: 795 PGVLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAI---RRKAAERAAINAP----- 846

Query: 601 IVQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            +Q  + DI+   M            N   +++ VHDE+V E            + +LM
Sbjct: 847 -MQGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALM 904


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 105/583 (18%), Positives = 188/583 (32%), Gaps = 101/583 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       +  V     A +A      + +   PV+L     ++ +   L   L 
Sbjct: 344 DTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQL----TEAVVLGKLKPLLE 399

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFSE 120
           D T + V  N  ++R +    L  DI  +     T + +      +S      LA  +  
Sbjct: 400 DPTRLKVGQNLKYDRNVL---LNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLG 456

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-- 178
             T   E            I          N ++  +    Y   D + T  L + L   
Sbjct: 457 VETTSFE-----------DIAGKGVKQLTFNQIEL-EQAAPYAAEDADITLRLHQTLWGQ 504

Query: 179 ---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                      S+ E  L  +   +   G  ID  L+ +  + I     +L+    +L  
Sbjct: 505 LEAVPGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELERQAHELAG 564

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                S     L   LF   G+ ++  +     S      + +LA+   L RL      +
Sbjct: 565 QEFNLS-SPKQLGEILFTKLGLPIIKKTPKGAPSTAEE-VLAELAETYELPRLLMEHRTL 622

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L   +    GR+  +      + TGR S      QN+P            
Sbjct: 623 AKLKSTYTDKLPLMIKPQTGRVHTSY-HQAVAATGRLSSSDPNLQNIP------------ 669

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   I S G KLV AD + IE R++A ++G+   + AFA
Sbjct: 670 ------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFA 717

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+DI+  T A+ F   +D V+ + R   K +   L Y       AK      +     +
Sbjct: 718 EGKDIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYM 777

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
             + +       + +                         +S +  ++      A+   +
Sbjct: 778 DLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKGAERAAINAPM 837

Query: 499 IGTACELVKKAWRAKHQGVL-------QLWKDLTEGFACVVQE 534
            GTA +++K+A       +        ++   + +     ++E
Sbjct: 838 QGTAADIIKRAMINVDGWIRGIEDESIRMLMQVHDELVFEIRE 880



 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 29/182 (15%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISARR 542
           A   ++ G A + V    R   + +            L K L  G A   +       R 
Sbjct: 725 ATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERY 784

Query: 543 VANVPRLVMRRHKRDVHIVLPS--SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
              +  +   R + +    + +   RRL   D+K   +          R           
Sbjct: 785 PGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNA---GLRKGAERAAINAP----- 836

Query: 601 IVQAISRDILCEGMKN-------ATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652
            +Q  + DI+   M N              +++ VHDE+V E  +         +   M+
Sbjct: 837 -MQGTAADIIKRAMINVDGWIRGIEDESIRMLMQVHDELVFEIREEKLEEYTAIIKEKMS 895

Query: 653 KN 654
             
Sbjct: 896 AA 897


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 98/577 (16%), Positives = 195/577 (33%), Gaps = 106/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + + D P +L    +++ + + L   + D T+  +  N  F+R + K+    D
Sbjct: 379 AAYLPVGHDYLDAPDQL----DRATVLAALKPVMEDPTIGKIGQNLKFDRGVLKRY---D 431

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I        ++L       +        LA  F +H T   E   GK      F + ++ 
Sbjct: 432 IELAGIAFDTMLESYVLDSVAGRHDMDSLAERFLQHTTVSFEEIAGKGRNQLTFNQIAM- 490

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                          +    Y   D + T  L ++L P             + E  L  +
Sbjct: 491 ---------------EQAASYAAEDADVTLRLHQKLWPRIEQAPELRRVFEEIEMPLVPV 535

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  ++      +A+  ++L+ +  +L +     S  T  L+  L+    
Sbjct: 536 LSRIERTGVLIDESILAAHSVELAKRLEELEGEAHQLAEEPFNLS-STKQLQEILYDKQK 594

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
           + ++  + G   S  +   + +LA D  L +L      + KL     + L + ++   + 
Sbjct: 595 LPVLKKTPGGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPQMINPLSKR 653

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P                                +R
Sbjct: 654 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 689

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA     +V AD + IE R++A +A +   + AFA G+DI+  T A+ F   ++KV+
Sbjct: 690 QAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAFAAGKDIHRATAAEVFGMSLEKVT 749

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
           ++QR   K +   L Y       A+      S     +  + +       + +  + ++ 
Sbjct: 750 QDQRRSAKAINFGLIYGMSAFGLARQLSVPRSEAQKYMNLYFERYPGVLEYMERTRRQAS 809

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                                +   +      A+   + GT+ +++K+A  A        
Sbjct: 810 DRGYVETLDGRRLYLLDIHSRNGMRKKGVERAAINAPMQGTSADIIKRAMIAIDGWLQQE 869

Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
               + ++Q+  +L         E      + +    
Sbjct: 870 APPVRMIMQVHDELVFEVQRDAVESAKARIKALMEGC 906



 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 16/118 (13%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
             V        R+     ++     RRL   D+             + R           
Sbjct: 795 PGVLEYMERTRRQASDRGYVETLDGRRLYLLDIHSRN---GMRKKGVERAAINAP----- 846

Query: 601 IVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            +Q  S DI+   M               +++ VHDE+V E       S    + +LM
Sbjct: 847 -MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVHDELVFEVQRDAVESAKARIKALM 903


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/577 (18%), Positives = 195/577 (33%), Gaps = 109/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++ A+ + L   L D     V  N  ++R + K     D
Sbjct: 379 AAYLPVAHDYLDAPEQL----DRDAVLAQLKPLLEDPDASKVGQNLKYDRGVLKNY---D 431

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I        ++L     N +        L+  +  H T   E   GK      F + +++
Sbjct: 432 IELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQIALE 491

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190
              +                Y   D + T +L  ++ P  +            E  L  +
Sbjct: 492 QAAH----------------YAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKV 535

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ID  ++ +  + +     +L+    +L       S  T  L++ LF   G
Sbjct: 536 ISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELAGEPFNLS-STKQLQVILFEKQG 594

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           I     + G   S  S   + +LA D  L ++      + KL     + L   ++   GR
Sbjct: 595 IKPTKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGR 653

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P                                +
Sbjct: 654 VHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNDEGRRI 688

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G ++V AD + IE R++A ++ +   + AF+ GEDI+  T ++ F  P+ KV
Sbjct: 689 RQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKV 748

Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479
           + EQR   K +   L Y   A    +     A      +  + +         E+  Q  
Sbjct: 749 TGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLA 808

Query: 480 SHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRA------- 512
           + + ++                    +      A+   + GTA +++K+A  A       
Sbjct: 809 ASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDDWLQK 868

Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                 + ++Q+  +L         +  S   R +  
Sbjct: 869 QTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALME 905


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 117/616 (18%), Positives = 213/616 (34%), Gaps = 105/616 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  +       +A     A+ + D P +L    +++A+   L   L 
Sbjct: 355 DLETDSLDTLSANIVGIAFAVAPGKAAYLPVAHDYLDAPPQL----DRAAVLKQLKPLLE 410

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           D     V  N  ++R + K     DI        ++L     N +        LA  +  
Sbjct: 411 DSKAAKVGQNLKYDRGVLKNY---DIELNGIKFDTMLESYCLNSVGGKHDMDSLAARWLN 467

Query: 121 HLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           H T   E     GK  +  F + +++   +                Y   D + T +L  
Sbjct: 468 HKTVTFEEIAGKGKYQLT-FNQIALEQAAH----------------YAAEDADVTLQLHL 510

Query: 176 RLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++ P  +            E  L  +   +   G  ID +++ K  + +     +L++  
Sbjct: 511 QMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLAELEQKA 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L       S  T  L+  LF    I     + G   S  S   + +LA D  L ++  
Sbjct: 571 HELAGEPFNLS-STKQLQTILFEKQEIKPTKKTPGGAPST-SEKVLAELALDYPLPKVIL 628

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++   GR+  +      + TGR S      QN+P       
Sbjct: 629 EHRGLSKLKSTYTDKLPQMINPITGRVHTSY-HQAVTATGRLSSNDPNLQNIP------- 680

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA   K++V AD + IE R++A ++ +   
Sbjct: 681 -----------------VRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLSQDKGL 723

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454
           + AFA GEDI+  T ++ F   + KVS EQR   K +   L Y   A    +     A  
Sbjct: 724 LDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGE 783

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493
               +  + +       + +  +A++             LW+          +      A
Sbjct: 784 AKKYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWLPDINSSNAIRRKAAERAA 843

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-SISARRVANVPRLVMR 552
           +   + GTA +++K+A  A    +LQ   D  +    V  E    I    VA   + +  
Sbjct: 844 INAPMQGTAADIIKRAMIAVDGWLLQQNSDEVKMIMQVHDELVFEIHKDAVAGASQTIRE 903

Query: 553 RHKRDVHIVLPSSRRL 568
             +  + + +P    +
Sbjct: 904 LMENSMKLDVPLQVEV 919


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 103/602 (17%), Positives = 200/602 (33%), Gaps = 109/602 (18%)

Query: 7   DIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    V       A +A      + + D P +L    ++  + + L   L 
Sbjct: 357 DTETDSLDTISTTLVGVSFAINAGEAAYLPLGHDYLDAPEQL----DRDKVLALLKPVLE 412

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           D +V+ +  N  F++ +  +  GI +    +  T + +     +        L+  +  H
Sbjct: 413 DASVLKIGQNLKFDKGVMARY-GITLRGIAF-DTMLESYVLDSVAGRHDMDSLSERYLNH 470

Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T   E   GK      F +  ++                    Y   D + T  L + L
Sbjct: 471 KTITFEEIAGKGKNQLTFNQIPLEQAAV----------------YAAEDADVTLRLHQVL 514

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                          D +  L  +   +  +G  ID  ++ +  + + Q   +L+    +
Sbjct: 515 SEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLAELEVRAHE 574

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L   +   S  T  L+  L+    + +   +     S  +   + +LA D  L ++    
Sbjct: 575 LAGEVFNLS-STKQLQAILYEKLQLPVTKKTPKGAPST-NEEVLAELALDYPLPKVILEY 632

Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             + KL     + L   ++   +   T      + TGR S      QN+P          
Sbjct: 633 RGLAKLKSTYTDKLPMMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIP---------- 682

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G  +V AD + IE R++A ++ +   +KA
Sbjct: 683 --------------VRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLSCDAGLLKA 728

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457
           F++G DI+  T A+ F  PIDKV+ EQR   K +   L Y   A    +      +    
Sbjct: 729 FSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSAFGLSRQLGIGRNEAQK 788

Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496
            +  + +       + +  + ++                      +   +      A+  
Sbjct: 789 YMNLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYLPDIHSRNAISRKAAERAAINA 848

Query: 497 KLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
            + GTA +++KKA  +               ++Q+  +L       V EG     + +  
Sbjct: 849 PMQGTAADIIKKAMASIDAWLLSQEEPLINMIMQVHDELVFEVHESVLEGAKAKIKALME 908

Query: 546 VP 547
             
Sbjct: 909 SC 910


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 114/615 (18%), Positives = 208/615 (33%), Gaps = 111/615 (18%)

Query: 7   DIETRSPQPLPKV--GVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           D+ET S   L     G+ ++A           A+ + D P +L    ++S + + L   L
Sbjct: 355 DLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLL 409

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFS 119
            D     V  N  F+R + K+    DI  +     ++L     N +        LA  + 
Sbjct: 410 EDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTLASRWL 466

Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
            H T   E   GK      F + +++   +                Y   D + T +L  
Sbjct: 467 NHKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHV 510

Query: 176 RLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++ P  + E+            L  +   I   G  ID  ++    + +     +L+   
Sbjct: 511 KMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLAELELKA 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L       S     L+  LF   GI     + G   S  S   + +LA D  L ++  
Sbjct: 571 HELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVIL 628

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+  +      + TGR S      QN+P       
Sbjct: 629 EHRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP------- 680

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G ++V AD + IE R++A ++ +   
Sbjct: 681 -----------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGL 723

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454
           + AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y   A    +     A  
Sbjct: 724 LSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGE 783

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               +  + +       + +                         ++ +   +      A
Sbjct: 784 AKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAA 843

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++K+A  A         + L +  +  V+    +    V  V    +  
Sbjct: 844 INAPMQGTAADIIKRAMIAVD-------RWLEQQPSPEVKMIMQVHDELVFEVHADAVEA 896

Query: 554 HKRDVHIVLPSSRRL 568
               +  ++  S +L
Sbjct: 897 ACAQIRALMEGSMKL 911


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/577 (18%), Positives = 195/577 (33%), Gaps = 109/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++ A+ + L   L D     V  N  ++R + K     D
Sbjct: 379 AAYLPVAHDYLDAPEQL----DRDAVLAQLKPLLEDPDASKVGQNLKYDRGVLKNY---D 431

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I        ++L     N +        L+  +  H T   E   GK      F + +++
Sbjct: 432 IELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQIALE 491

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190
              +                Y   D + T +L  ++ P  +            E  L  +
Sbjct: 492 QAAH----------------YAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKV 535

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ID  ++ +  + +     +L+    +L       S  T  L++ LF   G
Sbjct: 536 ISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELAGEPFNLS-STKQLQVILFEKQG 594

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           I     + G   S  S   + +LA D  L ++      + KL     + L   ++   GR
Sbjct: 595 IKPTKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGR 653

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P                                +
Sbjct: 654 VHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNDEGRRI 688

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G ++V AD + IE R++A ++ +   + AF+ GEDI+  T ++ F  P+ KV
Sbjct: 689 RQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKV 748

Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479
           + EQR   K +   L Y   A    +     A      +  + +         E+  Q  
Sbjct: 749 TGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLA 808

Query: 480 SHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRA------- 512
           + + ++                    +      A+   + GTA +++K+A  A       
Sbjct: 809 ASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIALDDWLQK 868

Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                 + ++Q+  +L         +  S   R +  
Sbjct: 869 QTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALME 905


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 196/577 (33%), Gaps = 106/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +++ + + L   L DE ++ +  N  F++ + ++    D
Sbjct: 381 AAYLPLAHDYLDAPDQL----DRATVLALLKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I  +     ++L       +        LA  + +H T   E   GK      F + ++ 
Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQIAL- 492

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190
                          +  G Y   D + T  L + L                 +  L  +
Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQTLWGKLQPHADLCQVFQTIDMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  ++ +  + +     +L+    +L       S  T  L+  L+    
Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTTRLAELEIQAYELAGEEFNLS-STKQLQGILYEKQK 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
           + ++  +     S  +   + +LA D  L +L      + KL     + L   ++   + 
Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P                                +R
Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  +V AD + IE R++A ++G++  + AFANG DI+  T ++ F   +DKV+
Sbjct: 692 QAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLLNAFANGLDIHRATASEVFGIALDKVT 751

Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471
            EQR   K +   L Y   A              + +  +       +Q + +  +  + 
Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811

Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------- 512
              +               S +   +      A+   + GTA +++KKA  A        
Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD 871

Query: 513 --KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
             K + ++Q+  +L       + E      + +    
Sbjct: 872 APKVKMIMQVHDELVFEIDDSIVEESISKIKVLMEGC 908



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RRL   D+    +    A     R            +Q  + DI+ + M          
Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKD 871

Query: 619 KNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
                +++ VHDE+V E  D+    S+  +  LM
Sbjct: 872 APKVKMIMQVHDELVFEIDDSIVEESISKIKVLM 905


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 110/570 (19%), Positives = 200/570 (35%), Gaps = 101/570 (17%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + GV AY         A+ + D P +L    ++  +   L   L D+T   V  N  ++
Sbjct: 383 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDTQAKVGQNLKYD 432

Query: 77  RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
             +  +  GI++   +   T + +   N +        LAL F +H     E        
Sbjct: 433 MSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQ------- 483

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184
               I          N ++  +    Y   D + T  L  RL+              + E
Sbjct: 484 ----IAGKGKKQLTFNQIELGEA-SPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIE 538

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   I   G  ID  L+    + IA    +L++   ++ +    +      L+  
Sbjct: 539 VPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAI 597

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299
           LF   G+ ++  +     S  +   + +LA D  L +L      + KL     + L + +
Sbjct: 598 LFEKMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMI 656

Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 657 NAETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 691

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+   
Sbjct: 692 EEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIG 751

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473
             ID+V+ EQR   K +   L Y       AK            +  + +         E
Sbjct: 752 VAIDQVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYME 811

Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510
           D   A S   +++  Y                       A+   + GTA +++KKA    
Sbjct: 812 DTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 871

Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGG 536
               +A+  G ++L   + +     VQE  
Sbjct: 872 DEWIQAEGDGRVKLLMQVHDELVFEVQESA 901


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 96/556 (17%), Positives = 181/556 (32%), Gaps = 101/556 (18%)

Query: 46  DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D  E     + +L  L+    D  V+ +  N  ++  +F +  G+ +           A+
Sbjct: 394 DLAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY-GVKVAPFDDTMLMSYAQ 452

Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
             G  +   ++              T +  GK+ I  F K  +                 
Sbjct: 453 NAGKHNHSMDSLSERYLGHSPISIKTLLGTGKSAIT-FDKVPVADA-------------- 497

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207
              +Y   D + T  L++ L PL   E          R L  +   +   G ++D D + 
Sbjct: 498 --VKYAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTLS 555

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++    AQ+   L+ +I +       +      L   LF    +      + T       
Sbjct: 556 RMSNAFAQKMAGLEAEIHEKAGQSF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYSTGA 613

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
             +  LA +  L  L      + KL     + L + ++   GR+  +    GA+ TGR +
Sbjct: 614 DILEDLATEHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLA 672

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   +A  G  L+  D 
Sbjct: 673 STDPNLQNIPIRS------------------------EEGRRIREAFVAEEGNVLLALDY 708

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA +A  D   +AF NG DI+  T ++ FN P++ +    R   K +   + Y
Sbjct: 709 SQIELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIY 768

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------- 488
                G A+  +   +     +  + +      T+ D     +                 
Sbjct: 769 GISGFGLARNLRIPRAEAQAFINTYFERFPGIRTYMDETVEFAKEHNFVQTLFGRKIHTP 828

Query: 489 -----------YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFA 529
                          A+   + GTA +++++A       +        LQ+  +L    A
Sbjct: 829 DINAKGPGAGFAKRAAINAPIQGTAADVIRRAMIRMPAAIKDLPAKMLLQVHDELVFEVA 888

Query: 530 CVVQEGGSISARRVAN 545
               E  + + R+V  
Sbjct: 889 EDAVEDVTNAVRKVME 904


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 106/583 (18%), Positives = 205/583 (35%), Gaps = 111/583 (19%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A      + +   P +L     + A  + L  
Sbjct: 346 IAVDTETTSLDYMQAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLP----REATLAKLKP 401

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L +  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 402 LLENPDIKKVGQNLKYDMSVLANA-GIQLKGVAF-DTMLESYVFNSVASRHDMDGLALKY 459

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F + ++                +    Y   D + T  L 
Sbjct: 460 LGHKNISFEEIAGKGAKQLTFNQIAL----------------EQAAPYAAEDADITLRLH 503

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  RG  ID  L+ +  E +A++  +L++ 
Sbjct: 504 QHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQH 563

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++       S  T  L+   F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 564 AHEIAGEPFNLS-STKQLQELFFTKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 621

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   ++   GR+  +     A+ TGR S      QN+P +    
Sbjct: 622 LEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRT--- 677

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  GK+++ AD + IE R++A ++ ++ 
Sbjct: 678 ---------------------EEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEG 716

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            ++AFA G+DI+  T A+ F+   + V+ EQR   K +   L Y       A+      +
Sbjct: 717 LLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  + +       + +  +A +                      +   +      
Sbjct: 777 EAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERA 836

Query: 493 AVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDL 524
           A+   + GTA +++KKA  A           + Q ++Q+  +L
Sbjct: 837 AINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDEL 879


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 101/561 (18%), Positives = 187/561 (33%), Gaps = 100/561 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  +  V  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 429 LKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNMDDLAK 486

Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   +   GK      F +  +                +  GEY   D + T +
Sbjct: 487 RYLGHQTIGFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 530

Query: 173 LFKRLI------P-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L       P         E  L  +   +   G  ID D +      I +    L+
Sbjct: 531 LQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALE 590

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L       +  T  L+  LF   G+ ++  +     S  +   + +LA    L +
Sbjct: 591 MQAHELAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEDVLEELAYSHELPK 648

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L + V+   GR+  +      + TGR S      QN+P +  
Sbjct: 649 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 705

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA +G K++ AD + IE R++A ++ +
Sbjct: 706 ----------------------NEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 743

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y       ++     
Sbjct: 744 AGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGIS 803

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            +     +  + Q      TF                         +  S +   +    
Sbjct: 804 RADAQRYMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAE 863

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A+   + GTA +++K A     + + +   D        +     +    V  V    
Sbjct: 864 RVAINAPMQGTAADIIKCAMIKLDE-ITRDDPD--------IHMIMQVHDELVFEVRSEK 914

Query: 551 MRRHKRDVHIVLPSSRRLVYS 571
           +      +   + ++  LV  
Sbjct: 915 IAFFSDLIKQHMEAAAELVVP 935


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 121/610 (19%), Positives = 213/610 (34%), Gaps = 103/610 (16%)

Query: 7   DIETRSPQPLPKVGVW-AYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S   L    V  A+A           A+ + D P +L    +++A+ + L   L 
Sbjct: 354 DLETDSLDTLSANIVGLAFAVAPGEAAYLPVAHDYLDAPDQL----DRAAVLAQLKPLLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           D     V  N  ++R + K     DI        ++L     N +        LA  +  
Sbjct: 410 DSKAAKVGQNLKYDRGVLKNY---DIELNGIKYDTMLESYCLNSVGGKHDMDSLAARWLN 466

Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H T   E   GK      F + +I                +  G Y   D + T +L  +
Sbjct: 467 HKTVTFEEIAGKGKNQLTFNQIAI----------------EQAGHYAAEDADVTLQLHLK 510

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + P            ++ E  L  +   +   G  ID +++ K  + +     +L++   
Sbjct: 511 MWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLAELEQQAH 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       S  T  L+  LF   GI     + G   S  S   + +LA D  L ++   
Sbjct: 571 DLAGEPFNLS-STKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILE 628

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   ++   GR+  +      + TGR S      QN+P        
Sbjct: 629 HRGLSKLKSTYTDKLPLMINPVTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 679

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA   K++V AD + IE R++A ++ +   +
Sbjct: 680 ----------------VRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLL 723

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AFA GEDI+  T ++ F   + KVS EQR   K +   L Y   A    +     A   
Sbjct: 724 AAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEA 783

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAV 494
              +  + +       + +  + ++             LW+          +      A+
Sbjct: 784 KKYMDLYFERYPGVLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAI 843

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-SISARRVANVPRLVMRR 553
              + GTA +++K+A  A    +L+   D  +    V  E    I    VA+    + + 
Sbjct: 844 NAPMQGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIHQDAVASASDKIRQL 903

Query: 554 HKRDVHIVLP 563
            +  + + +P
Sbjct: 904 MEGSMKLDVP 913



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M            +   +++ VHDE+V E       S    +  LM
Sbjct: 848 QGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIHQDAVASASDKIRQLM 904


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 199/576 (34%), Gaps = 109/576 (18%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ + D PV+L    +++ +   L   L DE  + V  N  F++ L
Sbjct: 382 GVAAY------LPVAHDYLDAPVQL----DRAYVLETLKPLLEDEKALKVGQNLKFDKSL 431

Query: 80  FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134
             +   ID+    +  T + +     +        L+  + +H T   E   GK      
Sbjct: 432 LARY-DIDLRGIAY-DTMLESYVLDSVSGRHDMDSLSDRYLDHKTITFEEIAGKGKNQLT 489

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183
           F + ++                +    Y   D + T +L   + P            ++ 
Sbjct: 490 FNQIAL----------------EQAAPYAAEDADVTLQLHLAMWPKLKESTGQLKVFNEI 533

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   I   G  ID  ++    + +++   +L+    +L +     +  T  L+ 
Sbjct: 534 EMPLLPVLSHIERTGVLIDQHILAAHSKELSKRLGELEIQAHELAEEPFNLA-STKQLQA 592

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298
            L+    + ++  + G   S  +   + +LA D  L ++      + KL     + L   
Sbjct: 593 ILYEKQKLPVLKKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLM 651

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++   GR+  +      + TGR S      QN+P                          
Sbjct: 652 INPVSGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------------------VR 686

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA  G ++V AD + IE R++A ++ +   + AFA G+DI+  T  + F
Sbjct: 687 NDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATAGEVF 746

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P+DKV+ EQR   K +   L Y       A+            +  + +       + 
Sbjct: 747 GLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYM 806

Query: 474 DWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +  + ++                          +      A+   + GTA +++K+A  A
Sbjct: 807 ERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRKAAERAAINAPMQGTAADIIKRAMIA 866

Query: 513 KH-------QGVLQLWKDLTEGFACVVQEGGSISAR 541
                    Q ++++   + +     V E     A 
Sbjct: 867 VDAWLQGQQQPLVRMIMQVHDELVFEVHESAMDDAC 902


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/602 (18%), Positives = 199/602 (33%), Gaps = 113/602 (18%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  +       +A     A+ + D P +L    ++S + + L   L 
Sbjct: 355 DLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLLE 410

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           D     V  N  F+R + K+    DI        ++L     N +        LA  + +
Sbjct: 411 DPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMDTLASRWLQ 467

Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H T   E   GK      F + +++   +                Y   D + T +L  +
Sbjct: 468 HKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHLK 511

Query: 177 LIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + P  + E+            L  +   I   G  ID  ++    + +     +L+    
Sbjct: 512 MWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELELKAH 571

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       S     L+  LF   GI     + G   S  S   + +LA D  L ++   
Sbjct: 572 ELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILE 629

Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   ++   GR+  +      + TGR S      QN+P        
Sbjct: 630 HRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP-------- 680

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G +++ AD + IE R++A ++ +   +
Sbjct: 681 ----------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLL 724

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y   A    +     A   
Sbjct: 725 SAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEA 784

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +       + +                          + +   +      A+
Sbjct: 785 KKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAI 844

Query: 495 KDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543
              + GTA +++K+A  A             + ++Q+  +L         E      R +
Sbjct: 845 NAPMQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDELVFEVQADAVEAACAQIRAL 904

Query: 544 AN 545
             
Sbjct: 905 ME 906


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/497 (19%), Positives = 175/497 (35%), Gaps = 75/497 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D  V+ +A N  ++ ++ K+  G+++           A   G+  +  +     
Sbjct: 454 LKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAPFDDTMLLSYALDAGMGGNGMDELSQR 512

Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEAT 170
             +      +E    GK+ I  F K  +D    Y    A+  ++ W++         E  
Sbjct: 513 WLNHTPIPFKEVCGSGKSQI-SFDKVPLDKATAYAAEDADVTLRLWKILKPRLA--AEEM 569

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             +++RL      ER +      +  RG  ID  ++  L    AQ   +L+ +I  +   
Sbjct: 570 TVVYERL------ERPMVATLAKMERRGISIDRQMLSLLSGEFAQGAARLESEIHDVAGE 623

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAI 289
            I +      L   LF   G+     ++ T     S S +  LA     L         +
Sbjct: 624 -IFNVGSPKQLGEILFGKMGLPGGKKTK-TGAWSTSASVLDDLAAQGHELPSKIVEWRQL 681

Query: 290 LKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L   ++   GR+  +     ++ TGR S      QN+P +          
Sbjct: 682 SKLKSTYTDALPSFINQETGRVHTSFSL-ASTSTGRLSSSEPNIQNIPIRT--------- 731

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA  GKKL+ AD + IE RVLA +A      +AFA
Sbjct: 732 ---------------SEGRKIRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFA 776

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +G DI+  T ++ F  PI+ +    R   K +   + Y     G A          G  +
Sbjct: 777 DGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGIARGEAGDYI 836

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           + + +       + +                     +    + +  M+  Y   A+   +
Sbjct: 837 KTYFERFPGIKDYMEETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPI 896

Query: 499 IGTACELVKKAWRAKHQ 515
            G+A +++++A     +
Sbjct: 897 QGSAADIIRRAMVRMDE 913


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 192/560 (34%), Gaps = 99/560 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F K +ID                +  +Y   D + T
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAID----------------IASQYAAEDADVT 534

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +
Sbjct: 535 MKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++
Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   ++   GR+  +      + TGR S      QN+P +
Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G K+V AD + IE R++A +A
Sbjct: 713 ------------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLA 748

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +    
Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
              +     ++++ Q   +   F                         + +S +   +  
Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + GTA +++K A     + +        E    ++Q    +    V  V  
Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919

Query: 549 LVMRRHKRDVHIVLPSSRRL 568
            ++  + + +   +  + +L
Sbjct: 920 ELIEHYSQLIKAEMEKAIQL 939


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/541 (17%), Positives = 178/541 (32%), Gaps = 85/541 (15%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             +   L     +  +  V  N  F+  +     G+++    W  T + +          
Sbjct: 360 ETVLERLRPAFGNPAIRKVGQNLKFDLQILA-VAGLEVQ-GSWCDTMLCSYLLNPSRG-- 415

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L     EHL         +    K  I     +  +A           Y   D +AT
Sbjct: 416 GHGLDALAQEHLNHKMISYDEVTGSGKNRICFSEVEVEKAT---------RYAAEDADAT 466

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L ++L+P+           + E  L  +   +   G  +DL  + +L     Q  ++L
Sbjct: 467 WLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQEL 526

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++ I++L  G   +      L   LF   G+     ++G       +  +T LA++  + 
Sbjct: 527 EKRIIELAGGPF-NLNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEIA 585

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +L      + KL     + L++     GR+  +      + TGR S      QN+P +  
Sbjct: 586 KLLLDYRGLTKLKSTYTDALAKLTDRQGRVHTSYN-QAVTATGRLSSSDPNLQNIPIRT- 643

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  ++ AD + IE RVLA ++ +
Sbjct: 644 -----------------------DEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQD 680

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
                AF+  EDI+  T ++ F    + V+ E R   K +   + Y  G    AK     
Sbjct: 681 PVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQGAFSLAKQLGVA 740

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
            +     +  + +       F D   A +                      +  ++    
Sbjct: 741 RNVAEKFIAAYKERHSGAIAFLDSCIASAKETGYVTTILGRKLPIADITSSNGNLRSFAE 800

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544
             A+   + G+A +++K+A     + +       +L   + +     V E      R + 
Sbjct: 801 RNAINYPIQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHDELVFEVLETELEQMRELV 860

Query: 545 N 545
           N
Sbjct: 861 N 861


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/577 (18%), Positives = 194/577 (33%), Gaps = 106/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L DR +  A+       L DE ++ +  N  F++ + ++    D
Sbjct: 381 AAYLPLAHDYLDAPEQL-DRAKVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I  +     ++L       +        LA  +  H T   E   GK      F + ++ 
Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL- 492

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190
                          +  G Y   D + T  L ++L                 +  L  +
Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQKLWGKLQPHADLCQVFQTIDMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  ++ +  + +     +L+    +L       S  T  L+  L+    
Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTTRLAELETQAYELAGEEFNLS-STKQLQGILYEKQK 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
           + ++  +     S  +   + +LA D  L +L      + KL     + L   ++   + 
Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P                                +R
Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F T +DKV+
Sbjct: 692 QAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDKVT 751

Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471
            EQR   K +   L Y   A              + +  +       +Q + +  +  + 
Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811

Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
              +               S +   +      A+   + GTA +++KKA  A        
Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD 871

Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
               + ++Q+  +L       V E      + +    
Sbjct: 872 APQVKMIMQVHDELVFEIHDSVIEESISKIKTLMEGC 908



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RRL   D+    +    A     R            +Q  + DI+ + M          
Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKD 871

Query: 619 KNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
                +++ VHDE+V E  D+    S+  + +LM
Sbjct: 872 APQVKMIMQVHDELVFEIHDSVIEESISKIKTLM 905


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 201/617 (32%), Gaps = 109/617 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP-SDLLQY 60
           D ET S   +           A +   ++A +                   +P  ++L  
Sbjct: 375 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 424

Query: 61  LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L+    D+T++ +  N  F+R + +   GI++    +  T + +     + S      LA
Sbjct: 425 LKPILEDKTILKIGQNLKFDRGIMENE-GIELNGI-YFDTMLESYVLNSVSSRHDMDTLA 482

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                H T   E    IA   KG +     +  +A           Y   D + T  L +
Sbjct: 483 EKHLNHKTTTFE---EIAGKGKGQLTFNQIEVEQAT---------LYAAEDADITLLLHQ 530

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P             D E  L  +   +  +G  ID  ++    + I Q   +++++ 
Sbjct: 531 ALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET 590

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L       S     L+  LF    + ++  +     S  +   +  LA    L RL  
Sbjct: 591 FALAGQEFNLS-SPKQLQEILFEKLNLPIIKKTPKGAPST-NEEVLEALAHSHELPRLIL 648

Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               + KL     + L   V+S  +   T      + TGR S      QN+P        
Sbjct: 649 EHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP-------- 700

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I  +G K+V AD + IE R++A ++ +   +
Sbjct: 701 ----------------VRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLL 744

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AFA G+DI+  T ++ F  P+D+V+ EQR   K +   L Y   A    +         
Sbjct: 745 DAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 804

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494
              +  + +       + +  + ++      +                          A+
Sbjct: 805 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 864

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              + GTA +++KKA  A           +       V     +    V  V    + + 
Sbjct: 865 NAPMQGTAADIIKKAMIAVD-------NWICHECPDDVHMIMQVHDELVFEVRESYLEKA 917

Query: 555 KRDVHIVLPSSRRLVYS 571
              +H ++ SS  L   
Sbjct: 918 NAMIHKLMESSMELAIP 934


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 108/605 (17%), Positives = 204/605 (33%), Gaps = 105/605 (17%)

Query: 7   DIETRSPQPLPKVGVW-AYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    V  ++A +         A+ + D P ++     +  +   L   L 
Sbjct: 357 DTETDSLDNISANMVGLSFATEPGMAAYVPVAHDYLDAPNQI----SRERVLELLKPLLE 412

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           DE    V  N  F+R + +   GI++    +  T + +     +        L+  + +H
Sbjct: 413 DEKAKKVGQNLKFDRGILQNY-GIELRGIAY-DTMLESYILNSVAGRHDMDSLSDRWLKH 470

Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T   E   GK      F + ++                +  G Y   D + T +L  ++
Sbjct: 471 KTVTFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKM 514

Query: 178 IPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P               E  L  +   I   G +ID  ++ K  E +A    +L++   +
Sbjct: 515 WPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLSELEQKAHE 574

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L ++    
Sbjct: 575 IAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILQY 632

Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             + KL     + L   ++       T      + TGR S      QN+P          
Sbjct: 633 RGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSSTEPNLQNIP---------- 682

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA     +V AD + IE R++A ++ +   + A
Sbjct: 683 --------------VRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLLTA 728

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457
           FA G+DI+  T A+ F  P+D V+ +QR   K +   L Y   A    +           
Sbjct: 729 FAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQK 788

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKD 496
            +  + +       + +  +A++      +                          A+  
Sbjct: 789 YMDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDITSSNAARRAGAERAAINA 848

Query: 497 KLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRL 549
            + GTA +++K+      AW  K +  +++   + +     V  E     ++++  +   
Sbjct: 849 PMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVFEVHHEDLEAVSKKIHELMEG 908

Query: 550 VMRRH 554
            M   
Sbjct: 909 SMTLD 913


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/589 (17%), Positives = 198/589 (33%), Gaps = 108/589 (18%)

Query: 2   SKLFIDIET----RSPQPLP------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS 51
             + +D ET         L       + G  AY          + +   P ++    +  
Sbjct: 354 KLIAVDTETDNLDYMSANLVGISFALENGEAAY------LPLRHNYIGAPQQI----DFD 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
              S L   L +  +  V  N  ++  +F +  GI++    +  T +L+           
Sbjct: 404 TALSRLKPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTY-DTMLLSYVLDSTGRHNM 461

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA  +  H T   E    IA   KG +                +    Y   D + T 
Sbjct: 462 DDLAKRYLGHQTISFE---EIAGKGKGQLTF---------DQIPLEHATTYAAEDADITM 509

Query: 172 ELFKRLIP-LSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L   +S+           E  L  +   +   G  ID + +L     IA+    L
Sbjct: 510 KLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERLTAL 569

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   +L       +  T  L+  LF   G+ ++  +     S  +   + +LA D  L 
Sbjct: 570 EQQAYELAGQTFNLA-STKQLQEILFDKLGLPVLKKTPKGAPST-NEEVLEELAYDHELP 627

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +L      + KL     + L + ++   GR+  +      + TGR S      QN+P + 
Sbjct: 628 KLLVEHRGLSKLKSTYTDKLPQMINKHTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   I   G  +V AD + IE R++A ++ 
Sbjct: 686 -----------------------NEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHLSK 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   I AF+ G+DI+ +T A+ F  P+++V+ EQR   K +   L Y       ++    
Sbjct: 723 DQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMSSFGLSRQLGI 782

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
             +     +  + Q      TF                            S +   +   
Sbjct: 783 PRNDAQKYMDLYFQRYPGVQTFMTDIRETAKAQGYVATLFDRRLYLPDINSSNAIRRKAA 842

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQ 533
              A+   + GTA +++K+A     + ++     Q+   + +     V+
Sbjct: 843 ERVAINAPMQGTAADIIKRAMIDLDKQIVGNPDIQMIMQVHDELVFEVR 891


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/560 (17%), Positives = 192/560 (34%), Gaps = 99/560 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F K +ID                   +Y   D + T
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SKYAAEDADVT 534

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L+P            ++ E  L  +   I   G  ID + +L     I Q   +
Sbjct: 535 MKLHQVLVPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++
Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653

Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   ++   GR+  +      + TGR S      QN+P +
Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K+V AD + IE R++A +A
Sbjct: 713 ------------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 748

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +    
Sbjct: 749 NDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
              +     ++++ Q   +   F                         + +S +   +  
Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKA 868

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + GTA +++K A     + +        +    ++Q    +    V  V  
Sbjct: 869 AERVAINAPMQGTAADIIKVAMIDIDKAIRG-----DDNIKMIMQ----VHDELVFEVKE 919

Query: 549 LVMRRHKRDVHIVLPSSRRL 568
            ++  + + +   +  + +L
Sbjct: 920 ELIEHYSQLIKAEMEKAIQL 939


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/545 (17%), Positives = 178/545 (32%), Gaps = 97/545 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +V+ +  N  ++  +  +  GI +           A+  G  +   +    L
Sbjct: 417 LKPVLEDPSVLKIGQNIKYDWKVLARH-GIRMVPLDDTMLLSYAQNAGAHNHGMDELADL 475

Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +  GK+ I  F + +ID                   EY   D E T  
Sbjct: 476 YLGHRCLPIKDLIGSGKSQIN-FSQVAIDKA----------------SEYAAEDAEVTWR 518

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              ER +  +   +   G RID + + ++    AQ+   L+ 
Sbjct: 519 LWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMSNAFAQKMAGLEA 578

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I +L  G   +      L   LF   G+        T         +  LA +   L  
Sbjct: 579 EIHELAGGPF-NVGSPKQLGEILFERMGL-AGGKQGKTGAFSTGAEVLEDLAAEGHELPA 636

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 AI KL     + L   V+   GR+  +    GA +TGR +      QN+P +  
Sbjct: 637 RVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGA-QTGRLASTDPNLQNIPVRT- 694

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A+ G +LV  D + IE R+LA +A  
Sbjct: 695 -----------------------DEGRRIREAFVAAPGMRLVSLDYSQIELRILAHVAQI 731

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
               +AF +G DI+  T ++ F  P++ +    R   K +   + Y     G A+  +  
Sbjct: 732 PALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAINFGVIYGISGFGLARNLRIP 791

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY--------------------PE 491
            +     +  + +       + D   A +                               
Sbjct: 792 RAEAQAFIDTYFERFPEIRAYMDRTVAGAKQDGFVRTLFGRRIMTPGINQSGPAAGGARR 851

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVP 547
            A+   + G A +++++A     Q +     ++   + +     V+E        +  V 
Sbjct: 852 AAINAPIQGAAADIIRRAMIRMPQAIAHLPARMLLQVHDELVFEVEEAAVPE---LVEVA 908

Query: 548 RLVMR 552
           R VM+
Sbjct: 909 RGVMQ 913


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/602 (18%), Positives = 199/602 (33%), Gaps = 113/602 (18%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S       +  +       +A     A+ + D P +L    ++S + + L   L 
Sbjct: 317 DLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLLE 372

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           D     V  N  F+R + K+    DI        ++L     N +        LA  + +
Sbjct: 373 DPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMDTLASRWLQ 429

Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H T   E   GK      F + +++   +                Y   D + T +L  +
Sbjct: 430 HKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHLK 473

Query: 177 LIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + P  + E+            L  +   I   G  ID  ++    + +     +L+    
Sbjct: 474 MWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELELKAH 533

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       S     L+  LF   GI     + G   S  S   + +LA D  L ++   
Sbjct: 534 ELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILE 591

Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   ++   GR+  +      + TGR S      QN+P        
Sbjct: 592 HRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP-------- 642

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G +++ AD + IE R++A ++ +   +
Sbjct: 643 ----------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLL 686

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y   A    +     A   
Sbjct: 687 SAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEA 746

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +       + +                          + +   +      A+
Sbjct: 747 KKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAI 806

Query: 495 KDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543
              + GTA +++K+A  A             + ++Q+  +L         E      R +
Sbjct: 807 NAPMQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDELVFEVQADAVEAACAQIRAL 866

Query: 544 AN 545
             
Sbjct: 867 ME 868


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/597 (17%), Positives = 203/597 (34%), Gaps = 108/597 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T         
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA  +  H T   E  A   +  + + +  P            +   EY   D + T 
Sbjct: 462 DDLAKRYLGHETIAFESIAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509

Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L      E             L  +   +   G  ID D +      IA     L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    L       +  T  L+  LF   G+ ++  +     S  +   + +LA    L 
Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELAYSHELP 627

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L + V+S  GR+  +      + TGR S      QN+P + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 686 -----------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---------- 444
           +   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y             
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782

Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQY 489
               A+ +  +       +QQF  +++  +  + +               S +   +   
Sbjct: 783 SRPDAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              A+   + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/599 (18%), Positives = 204/599 (34%), Gaps = 109/599 (18%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ID ET +       L  + +    E A     A+   D   +L     +  + + L   L
Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEENASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
            +  +  +  N  ++  + K   GI +    +  T + +              LAL +  
Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIGY-DTMLESYVLNSGAGRHDMDSLALKYLG 436

Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + T   +   GK     RF +  +                   G Y   D + T  L  +
Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVVKA----------------GIYAAEDADITLRLHHK 480

Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+++ V+L
Sbjct: 481 LYPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L+  LF    + +V  +  T +   + S + +LA D  L  +     
Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ KL     + L + ++       T      + TGR S      QN+P +         
Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA  G  ++ AD + IE R++A ++ +D  ++AF
Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANG DI+  T ++ F T +D VSKEQR   K +   L Y       AK            
Sbjct: 695 ANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  + +       + +  + ++H                     +L  Q      A+   
Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814

Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           + GTA +++KK   A             + ++Q+  +L         E       ++  
Sbjct: 815 MQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLME 873


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 199/562 (35%), Gaps = 89/562 (15%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + GV AY         A+ + D P +L    ++  +   L   L D+    V  N  ++
Sbjct: 378 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 427

Query: 77  RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKA 130
             +  +  GI++   +   T + +   N +        LAL F +H          +GK 
Sbjct: 428 MSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKK 485

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
            +        ++ PY    A+                E  + +++      + E  L  +
Sbjct: 486 QLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKAIYE------EIEVPLIPV 539

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  +D  L+    + IA    +L++   ++ +    +      L+  LF   G
Sbjct: 540 MSRIERTGVFVDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAILFEKMG 598

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGR 304
           + ++  +     S  +   + +LA D  L +L      + KL     + L + ++   GR
Sbjct: 599 LPVIKKTPSGSPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGR 657

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 658 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 692

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     I+ V
Sbjct: 693 RQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVNIEDV 752

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479
           + EQR   K +   L Y       AK            +  + +         ED   A 
Sbjct: 753 TSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDTRSAA 812

Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW-------RA 512
           S   +++  Y                       A+   + GTA +++KKA        +A
Sbjct: 813 SEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQA 872

Query: 513 KHQGVLQLWKDLTEGFACVVQE 534
           +  G ++L   + +     V+E
Sbjct: 873 EGDGRVKLLMQVHDELVFEVEE 894


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/519 (18%), Positives = 192/519 (36%), Gaps = 73/519 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +VM VA N+ ++  +     G+++           A   GL +   +     
Sbjct: 407 LQPMLEDRSVMKVAQNAKYDVKVLANY-GVEVAPIDDTMLLSYALHAGLHNHGMDGLAER 465

Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATR 171
                     + +  GK+ I        D+ PY    A+    + +LF     + V  T 
Sbjct: 466 YLGHTPLPIKSLIGSGKSQITFDRVPIADAAPYAAEDADITLRFHKLFKPKLHQ-VGVT- 523

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           ++++RL      ER L  +   +   G ++D D++ ++    AQ+   L+ +I +L    
Sbjct: 524 KVYERL------ERPLVPVLARMERSGIKVDKDVLSRMSNAFAQKMAGLEAEIHELAGES 577

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287
             +      L   LF   G+      +     T   IL            +L+    S  
Sbjct: 578 F-NVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDLATEHDLPGRVLDWRQLSKL 636

Query: 288 AILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L + +++D GR+  +    GA+ TGR +      QN+P +             
Sbjct: 637 KSTYTDALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIPIRS------------ 683

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  GK LV  D + IE R+LA IAG D    AF +G+
Sbjct: 684 ------------EEGRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAFKDGQ 731

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T ++ FN P+++++ + R   K +   + Y     G A+  +   +     + ++
Sbjct: 732 DIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRY 791

Query: 463 SQNVKSTSTFE-DWEQAESHHLWMQDQYPEF-------------------AVKDKLIGTA 502
            +      T+  D ++    +L++Q  +                      A+   + GTA
Sbjct: 792 FERFPGIRTYMDDTKKFAKENLYVQTLFGRKIHTPEINAKGPGAGFAGRAAINAPIQGTA 851

Query: 503 CELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGS 537
            +++++A       +     ++   + +     V E  +
Sbjct: 852 ADIIRRAMIRMEDAIEGIPAKMLLQVHDELVFEVDEDAT 890



 Score = 43.6 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 602 VQAISRDILCEGMKNATKNGYDI----VLTVHDEIVSETPDTPYFSV 644
           +Q  + DI+   M         I    +L VHDE+V E  +    ++
Sbjct: 847 IQGTAADIIRRAMIRMEDAIEGIPAKMLLQVHDELVFEVDEDATDTL 893


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 191/560 (34%), Gaps = 99/560 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F K +ID                   +Y   D + T
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +
Sbjct: 535 MKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++
Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   ++   GR+  +      + TGR S      QN+P +
Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G K+V AD + IE R++A +A
Sbjct: 713 ------------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLA 748

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +    
Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
              +     ++++ Q   +   F                         + +S +   +  
Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + GTA +++K A     + +        E    ++Q    +    V  V  
Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919

Query: 549 LVMRRHKRDVHIVLPSSRRL 568
            ++  + + +   +  + +L
Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 191/560 (34%), Gaps = 99/560 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F K +ID                   +Y   D + T
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +
Sbjct: 535 MKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLSE 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++
Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   ++   GR+  +      + TGR S      QN+P +
Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G K+V AD + IE R++A +A
Sbjct: 713 ------------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLA 748

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +    
Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
              +     ++++ Q   +   F                         + +S +   +  
Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + GTA +++K A     + +        E    ++Q    +    V  V  
Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919

Query: 549 LVMRRHKRDVHIVLPSSRRL 568
            ++  + + +   +  + +L
Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/576 (16%), Positives = 195/576 (33%), Gaps = 104/576 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + + D P +L    ++  + + L   L +E +  +  N  F++ +  +  GID
Sbjct: 381 AAYLPLGHDYLDAPTQL----DRDTVLAQLKPLLENEAIGKIGQNLKFDKGVMARY-GID 435

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +     +        L+  + +H T   E   GK      F +  ++ 
Sbjct: 436 LRGIVF-DTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKNQLTFNQIPLEQ 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                              Y   D + T  L + L    +            +  L  + 
Sbjct: 495 AAV----------------YAAEDADVTLRLHETLWAKLEPQQELCQVFKNIDMPLVPVL 538

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  ID  ++ +  + + Q   +L+    +L       +     L   L+    +
Sbjct: 539 SRMERTGVLIDTTILAEHSQELTQRLAELEVRAHELAGEAFNLA-SPKQLGAILYEKLQL 597

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLR 306
            ++  +     S  +   + +LA D  L +L      + KL     + L + ++   +  
Sbjct: 598 PVIKKTPKGAPST-NEEVLAELALDHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRV 656

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T      + TGR S      QN+P                                +R 
Sbjct: 657 HTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIRQ 692

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             IA  G +++ AD + IE R++A ++ +   +KAF++G DI+  T A+ F  P+DKV+ 
Sbjct: 693 AFIAPQGYQILAADYSQIELRIMAHLSRDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTT 752

Query: 427 EQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           EQR   K +   L Y                 A+ +  +       +Q++ +  +  +  
Sbjct: 753 EQRRSAKAINFGLIYGMSAFGLSRQLGIARNEAQKYMNLYFERYPGVQEYMERTRQQAAD 812

Query: 473 EDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ------ 515
           + +               S +   +      A+   + GTA +++KKA  A         
Sbjct: 813 QGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDDWLQQEK 872

Query: 516 ----GVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                ++Q+  +L       V +  S   R +    
Sbjct: 873 PLATMLMQVHDELVFEVHHSVLDEVSAKIRNLMEGC 908


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/608 (17%), Positives = 201/608 (33%), Gaps = 121/608 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP------VKLWDRTEQSAMPS 55
            ++ ID ET S  P            A +   + AW +        V L  R E   +P 
Sbjct: 315 ERVAIDTETSSLDP----------HAAELVGFSLAWFEGDRTRAVYVPLGHR-EGKQIPR 363

Query: 56  DLLQYL-----RDETVMCVAHNSLFERIL-FKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
           D+   L      D +   +A N+ F+  + + + L     +     T + +      ++ 
Sbjct: 364 DVALALLGPWLEDGSKAKLAQNAKFDWQIFWAQGLRPRGLA---RDTLLESYVLDSTAAH 420

Query: 110 KNACLALNFSEHL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               LA  + +H      ++         F    I S                   Y   
Sbjct: 421 DLDSLAERYLQHRNISYAELTGKGRQARSFAAVDIASA----------------TAYAAE 464

Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D E    +  ++ P             D E  L  +   +   G RID+D++ +L E + 
Sbjct: 465 DAEVCLRVDAQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELD 524

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
                ++ +          +      ++  LF   G+ ++  + G   S  +   + +LA
Sbjct: 525 TRMATVESEAFAAAGQRF-NLNSPKQIQTILFDKMGLPVLKKTPGGQPST-NEDVLAELA 582

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           K   L RL      + KL     + L + +    GR+         + TGR S      Q
Sbjct: 583 KQADLPRLILDYRGLAKLKNTYADALPQMIQERTGRVHTHY-HQAVAATGRLSSSDPNLQ 641

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +R   +A  G  L+ AD + IE R+
Sbjct: 642 NIPVRS------------------------DLGRRIRQAFVAEPGHLLISADYSQIELRI 677

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           +A ++G+    +AFA G DI+  T A+ F  P+++V+ EQR   K +   L Y     G 
Sbjct: 678 MAHLSGDAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTPYGL 737

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483
           A+            ++++ +       + +                       +  S + 
Sbjct: 738 AQQLGVGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYLPEIRSQNP 797

Query: 484 WMQDQYPEFAVKDKLIGTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
             ++     A+   + GTA +L+K       AW        ++   + +     V E   
Sbjct: 798 ARRNYAERAAINAPMQGTAADLIKLAMIAVDAWLLAQTDHGRMLLQVHDELILEVPEKAV 857

Query: 538 ISARRVAN 545
            +A ++  
Sbjct: 858 DAACQMLR 865



 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 20/135 (14%)

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           + +G A    E        V        R  ++  ++     RRL   +++         
Sbjct: 743 VGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYLPEIRSQNP----- 797

Query: 584 TSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSET 636
                  R Y  +   N  +Q  + D++   M           +   ++L VHDE++ E 
Sbjct: 798 -----ARRNYAERAAINAPMQGTAADLIKLAMIAVDAWLLAQTDHGRMLLQVHDELILEV 852

Query: 637 PDTPYFSVGTLCSLM 651
           P+     V   C ++
Sbjct: 853 PEKA---VDAACQML 864


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 191/560 (34%), Gaps = 99/560 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F K +ID                   +Y   D + T
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SKYAAEDADVT 534

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +
Sbjct: 535 MKLHQVLTPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++
Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653

Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   ++   GR+  +      + TGR S      QN+P +
Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K+V AD + IE R++A +A
Sbjct: 713 ------------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 748

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +    
Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
              +     ++++ Q   +   F                         + +S +   +  
Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKA 868

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + GTA +++K A     + +        E    ++Q    +    V  V  
Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919

Query: 549 LVMRRHKRDVHIVLPSSRRL 568
            ++  + + +   +  + +L
Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 108/589 (18%), Positives = 192/589 (32%), Gaps = 96/589 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQY 60
           ID ET S  P+    VG+    E         A     V   D      + A+ + +  +
Sbjct: 360 IDTETTSIDPMLAQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQLSREAVLARMKPW 419

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D     V  +  ++  +F    GI +       T + +       +     LA     
Sbjct: 420 LEDAARKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 477

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D    +         EY   D + T  L + L P 
Sbjct: 478 LKTITYE------EVCGKGASQIGFDEVPLD------RATEYAAEDADITLRLHRALYPK 525

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         E    ++ Q +   G  ID + + +    + Q   +L++    L  
Sbjct: 526 VAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALAG 585

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F    + ++  +     S      + +LA+D  L +L      +
Sbjct: 586 QPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDFRGL 643

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  T     A  TGR +      QN+P +          
Sbjct: 644 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 693

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G  +V AD + IE R++A ++ ++  ++AF 
Sbjct: 694 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFR 738

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+D++  T A+ F     +V+ EQR   KV+   L Y       A           L +
Sbjct: 739 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 798

Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498
            ++       + + D  +  +H            LW+          +      A+   +
Sbjct: 799 DRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 858

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            GTA +L+K +  A     +Q W D   G     + G  +  R+V  V 
Sbjct: 859 QGTAADLIKLSMLA-----VQDWLD---GSPSAGKPGAPMRTRQVMQVH 899



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 32/103 (31%), Gaps = 24/103 (23%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RRL   D+ G       A     R            +Q  + D++   M          
Sbjct: 830 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQDWLDGS 880

Query: 619 ----KNGYDI----VLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
               K G  +    V+ VHDE+V E P      V   L  LM 
Sbjct: 881 PSAGKPGAPMRTRQVMQVHDELVLEVPQEELSLVRERLPELMC 923


>gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 284

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 17/282 (6%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         H ++ WQ F +YC RDVE 
Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           T   + +      L  +L    G+D+ ++ + T++  L  + 
Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEAT 278


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/571 (15%), Positives = 187/571 (32%), Gaps = 94/571 (16%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            A      + + D PV+L        +   +   L  E ++ +  N  ++  + +     
Sbjct: 379 HAAYLPLGHDYLDAPVQLP----LEEVLELMKPILESENILKIGQNLKYDAEVLENY--- 431

Query: 87  DIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           DI  K     T + +      + +    +      HL         IA   K  +     
Sbjct: 432 DIELKGIGYDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTF--- 488

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTI 194
                 +  A +    Y   D + T  L + L P  +            E  L  +   +
Sbjct: 489 ------NQIALEEAANYAAEDADVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRM 542

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G  ID +++    ++I     +L+++  +L       +     L+  LF    + ++
Sbjct: 543 ERKGVLIDANVLAAQSKVITARLAELEKEAFELAGEEFNLA-SPKQLQTILFEKLQLPVI 601

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTL 309
             +     S  +   + +LA +  L +L     ++ KL     + L   ++   +   T 
Sbjct: 602 KKTPSGAAST-NEEVLEELALNHALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTS 660

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P +                              +R   I
Sbjct: 661 YHQAVTATGRLSSRDPNLQNIPVRT------------------------EEGRRIRQAFI 696

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+++V+ +QR
Sbjct: 697 AREGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQR 756

Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ-------- 477
              K +   L Y       A+            +  + +       + +  +        
Sbjct: 757 RSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGY 816

Query: 478 -------------AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH---------- 514
                         +S +   +      A+   + GTA +++KKA  A            
Sbjct: 817 VETLEGRRLYLADIKSSNGMRRKAAEREAINAPMQGTAADIIKKAMIAVDNWLQTEKPHA 876

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
             ++Q+  +L         E      + +  
Sbjct: 877 DMLMQVHDELVFEVKESELERVQAQVQSLME 907


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 104/597 (17%), Positives = 197/597 (32%), Gaps = 108/597 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T         
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA  +  H T   E  A   +  + + +  P            +   EY   D + T 
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509

Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L      E             L  +   +   G  ID D +      IA     L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L 
Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELP 627

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L + V+S  GR+  +      + TGR S      QN+P + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 686 -----------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +    
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
             +     +  + Q   S   F                            S +   +   
Sbjct: 783 SRADAQKYMNLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              A+   + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/537 (18%), Positives = 185/537 (34%), Gaps = 93/537 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +VM +  N  ++  +F +  GI+I           A+  GL +   +A    
Sbjct: 423 LKPLLEDPSVMKIGQNMKYDAKIFARY-GIEIAPIDDTMLISYAQHAGLHNHGMDALSER 481

Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +  GK+ I  F +  ID                    Y   D + T  
Sbjct: 482 YLGHTPIPIKPLLGTGKSAIT-FDRVPIDHA----------------TPYAAEDADITLR 524

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              ER L  +   +   G ++D D++ ++    AQ+   L+ 
Sbjct: 525 LWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLSRMSNAFAQKMAGLEA 584

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +I ++      +      +   LF   G++         K       +  LA +  + R 
Sbjct: 585 EIHEMAGHSF-NVGSPAQVGEILFDEMGLEGGKKG-KNGKYSTGADILEDLATEHEMPRR 642

Query: 283 ASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L + ++ D GR+  +    GAS TGR +      QN+P +   
Sbjct: 643 ILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPIRS-- 699

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  GK LV  D + IE R+LA +AG D
Sbjct: 700 ----------------------EEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGID 737

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              +AF +G DI+  T ++ F+ P+D+++ + R   K +   + Y     G A+  +   
Sbjct: 738 SLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGFGLARNLRIPR 797

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEF 492
           S     + ++         + +   A +      +                         
Sbjct: 798 SEAQGFIDRYFDRFPGIKEYMNDTTAFAKANDRVETLFGRVIHTPNINAKGPQAGFAKRA 857

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545
           A+   + GTA +++++A       +     ++   + +     V++ G     + A 
Sbjct: 858 AINAPIQGTAADIIRRAMIRMPDAIKDQPAKMLLQVHDELLFEVEKDGVDQLIKTAK 914



 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 33/240 (13%)

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           A       +    +LQ      +      +   AE   + +   Y +  ++        +
Sbjct: 678 AGASTGRLASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGID 737

Query: 505 LVKKAWRAKHQGVLQLWKD-----LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
            +K+A+R  H        +     L E  A V ++  +I+   +  +    + R+ R   
Sbjct: 738 SLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGFGLARNLRIPR 797

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTAT---SQLMRERTYGGKLTE--NI------------- 601
                     +    G   Y+N  T       R  T  G++    NI             
Sbjct: 798 SEAQGFIDRYFDRFPGIKEYMNDTTAFAKANDRVETLFGRVIHTPNINAKGPQAGFAKRA 857

Query: 602 -----VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
                +Q  + DI+   M             ++L VHDE++ E        +  T   +M
Sbjct: 858 AINAPIQGTAADIIRRAMIRMPDAIKDQPAKMLLQVHDELLFEVEKDGVDQLIKTAKDIM 917


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 107/577 (18%), Positives = 198/577 (34%), Gaps = 106/577 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L DRT+  A+       L DE ++ +  N  F++ + ++    D
Sbjct: 381 AAYLPLAHDYLDAPEQL-DRTKVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I  +     ++L       +        LA  +  H T   E   GK      F + ++ 
Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLTFNQIAL- 492

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI----PLSD-------GERDLWLL 190
                          +  G Y   D + T  L ++L     P +D        +  L  +
Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQKLWGKLQPHTDLCQVFQTIDMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  ++ +  + +     +L+    +L       S  T  L+  L+    
Sbjct: 538 LSRIERTGVLIDPAILAEHSKRLTIRLAELETQAYELAGEEFNLS-STKQLQGILYEKQK 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
           + ++  +     S  +   + +LA    L +L      + KL     + L   ++   + 
Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALGYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P                                +R
Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F T +DKV+
Sbjct: 692 QAFIAPQGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDKVT 751

Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471
            EQR   K +   L Y   A              + +  +       +Q + +  +  + 
Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811

Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------- 512
              +               S +   +      A+   + GTA +++KKA  A        
Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLRKD 871

Query: 513 --KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
             K + ++Q+  +L       V E      + +    
Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKVLMEGC 908



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618
            RRL   D+    +    A     R            +Q  + DI+ + M          
Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLRKD 871

Query: 619 KNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
                +++ VHDE+V E  D+    S+  +  LM
Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKVLM 905


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/584 (18%), Positives = 192/584 (32%), Gaps = 121/584 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S  PL           K G  AY          + +   P +L      +A  + 
Sbjct: 346 DTETTSLDPLTAKLVGMSFSIKAGEAAY------LPLTHDYPGAPDQLP----FAATLAR 395

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  V  N  +++ +     GI +       T + +       +     LA+
Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLANH-GIVLNGIA-HDTLLQSYVLESHRTHGMDDLAM 453

Query: 117 N-FSEHLTKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                     E+  GK      F + ++                +   EY   D + T +
Sbjct: 454 RHLGVQTITYEQVAGKGAKQVSFSQVAL----------------EQASEYAAEDADVTLQ 497

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L P               E  +  +  TI   G  ID D++ +    I Q+   L+
Sbjct: 498 LHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALE 557

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +   +L      +      L+  LF   GI  +  +     S      + +LA D  L +
Sbjct: 558 QQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPST-DEDVLQELALDYPLPK 615

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L   ++   GR+  +      + TGR S      QN+P +  
Sbjct: 616 VLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYS-QAVAVTGRLSSSDPNLQNIPVRT- 673

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G  +V AD + IE R++A ++ +
Sbjct: 674 -----------------------AEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           D  + AFA GEDI+  T A+ F    D VS EQR   KV+   L Y       A+     
Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIE 770

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQ----------YP 490
                  ++++         +    +  +             LW+ +             
Sbjct: 771 RQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAE 830

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
             A+   + GTA +L+K A  A            + ++Q+  +L
Sbjct: 831 RAAINAPMQGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDEL 874



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
           Q  + D++   M          K    +++ VHDE+V E PD     V   L  LM    
Sbjct: 839 QGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDV- 897

Query: 656 SWAK-GLPLKAE 666
             AK  +PL AE
Sbjct: 898 --AKLDVPLLAE 907


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 102/568 (17%), Positives = 192/568 (33%), Gaps = 108/568 (19%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ + D P ++     +      L   L DE    V  N  ++R +
Sbjct: 378 GVAAY------VPVAHDYLDAPDQI----SRERALELLKPLLEDEKARKVGQNLKYDRGV 427

Query: 80  FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134
            +   GI++    +  T + +     +        L+  + +H T   E   GK      
Sbjct: 428 LQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLT 485

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183
           F + ++                +  G Y   D + T +L  ++ P             + 
Sbjct: 486 FNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPELQQYKGPLNVFENI 529

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +   G +ID  ++ K  E I     +L++   ++       S  T  L+ 
Sbjct: 530 EMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHEIAGEEFNLS-STKQLQT 588

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298
            LF   GI  +  + G   S  S   + +LA D  L ++      + KL     + L   
Sbjct: 589 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 647

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++   GR+  +      + TGR S      QN+P                          
Sbjct: 648 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 682

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA     +  AD + IE R++A ++ +   + AFA G+DI+  T A+ F
Sbjct: 683 NEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P++ V+ EQR   K +   L Y       A+            +  + +       + 
Sbjct: 743 GLPLESVTAEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 802

Query: 474 DWEQAESHHLWMQDQYP---------------------EFAVKDKLIGTACELVKKA--- 509
           +  +A++      +                          A+   + GTA +++K+A   
Sbjct: 803 ERTRAQAKERGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIA 862

Query: 510 ---WRAKHQGVLQLWKDLTEGFACVVQE 534
              W    Q  +++   + +     V +
Sbjct: 863 VDKWLQDEQPRVRMIMQVHDELVFEVHK 890



 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E        V   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLM 904


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/559 (17%), Positives = 190/559 (33%), Gaps = 99/559 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   L    V  +  N  ++  +F    G+ +    +  T + + T           LA
Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDELA 491

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  H T   E   GK      F K +ID                +  +Y   D + T 
Sbjct: 492 DRYLGHKTIEFEEIAGKGKNQLTFDKIAID----------------IASQYAAEDADVTM 535

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +L
Sbjct: 536 KLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAEL 595

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++ 
Sbjct: 596 EQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVP 654

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +L      + KL     + L   ++   GR+  +      + TGR S      QN+P + 
Sbjct: 655 KLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 712

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA+ G K+V AD + IE R++A +A 
Sbjct: 713 -----------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLAN 749

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +     
Sbjct: 750 DEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGI 809

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
             +     ++++ Q   +   F                         + +S +   +   
Sbjct: 810 SRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKAA 869

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+   + GTA +++K A     + +        E    ++Q    +    V  V   
Sbjct: 870 ERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKEE 920

Query: 550 VMRRHKRDVHIVLPSSRRL 568
           ++  + + +   +  + +L
Sbjct: 921 LVEHYSQLIKAEMEKAIQL 939


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 97/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 414 IKLILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            Q   EY   D + T +L + 
Sbjct: 472 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LQQATEYAAEDADVTMKLQQA 519

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 579

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y                 A
Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 792

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494
           + +  +       +QQF  ++++ +  + +               S +   +      A+
Sbjct: 793 QKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 853 NAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 904


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 100/560 (17%), Positives = 191/560 (34%), Gaps = 102/560 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L DR +  A+       L DE ++ +  N  F++ + ++    D
Sbjct: 381 AAYLPLAHDYLDAPEQL-DRAQVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141
           I  +     ++L       +        LA  + +H T   E   GK      F + ++ 
Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQIAL- 492

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190
                          +  G Y   D + T  L + L                 +  L  +
Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQTLWGKLQPHADLCQVFQAIDMPLVPV 537

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  ++ +  + +      L+    +L       +  T  L+  L+    
Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTTRLAGLETQAYELAGEEFNLA-STKQLQGILYEKQK 596

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
           + ++  +     S  +   + +LA D  L +L      + KL     + L   ++   + 
Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P                                +R
Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IAS G  +V AD + IE R++A ++G+   + AFANG DI+  T ++ F   +DKV+
Sbjct: 692 QAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDKVT 751

Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471
            EQR   K +   L Y   A              + +  +       +Q + +  +  + 
Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811

Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA------WRAKH 514
              +               S +   +      A+   + GTA +++KKA      W  K 
Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMISIDDWLQKD 871

Query: 515 QGVLQLWKDLTEGFACVVQE 534
             ++++   + +     + +
Sbjct: 872 TPLVKMIMQVHDELVFEIHD 891


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/573 (16%), Positives = 189/573 (32%), Gaps = 94/573 (16%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A  A      + + D PV+L        + + +   L +E +  +  N  ++  + +   
Sbjct: 381 AGHAAYLPIGHDYLDAPVQL----SLDDVIAVMKPILENEKIGKIGQNLKYDAEVLENY- 435

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           GI++    +  T + +      + +    +      HL         IA   K  +    
Sbjct: 436 GIELKGIAF-DTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTF-- 492

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQT 193
                  +    +    Y   D + T  L + L P  +            E  L  +   
Sbjct: 493 -------NQIPLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVLVR 545

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G  ID   +    ++I     +L++   +L       +     L+  LF    + +
Sbjct: 546 MERKGVLIDAPTLAAQSKIITARLAELEKQAFELAGEEFNLA-SPKQLQTILFEKLQLPV 604

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRG 307
           +  +     S  +   + +LA +  L +L     ++ KL     + L   ++   GR+  
Sbjct: 605 IKKTPSGAAST-NEEVLEELALNHELPKLLLEHRSLAKLKSTYTDKLPLMINPKTGRVHT 663

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P +                              +R  
Sbjct: 664 SY-HQAVTATGRLSSRDPNLQNIPVRT------------------------EEGRRIRQA 698

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA  G K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D+V+ +
Sbjct: 699 FIARKGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQVTSD 758

Query: 428 QRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ------ 477
           QR   K +   L Y       A+            +  + +       + +  +      
Sbjct: 759 QRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQ 818

Query: 478 ---------------AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH-------- 514
                           +S +   +      A+   + GTA +++KKA  A          
Sbjct: 819 GYVETLEGRRLYLADIKSSNGMRRKAAEREAINAPMQGTAADIIKKAMIAVDHWLQTEKP 878

Query: 515 --QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
               ++Q+  +L         E      + +  
Sbjct: 879 EADMLMQVHDELVFEVKESELEKVQAKVQELME 911


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/577 (17%), Positives = 195/577 (33%), Gaps = 98/577 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +++ +   L   L DE  + V  N  F+  L  +    D
Sbjct: 384 AAYLPVAHDYLDAPAQL----DRAYVLETLKPLLEDEKALKVGQNLKFDMGLLARY---D 436

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I  +     ++L       +        L+  +  H T   E            I     
Sbjct: 437 ITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFE-----------EIAGKGK 485

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTI 194
                N +   +    Y   D + T +L   + P            ++ E  L  +   I
Sbjct: 486 KQLTFNQIAL-EQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNEIEMPLVPVLSHI 544

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  ID  ++      + +   +L+    +L +     +  T  L+  L+    + ++
Sbjct: 545 ERTGVLIDQSILATHSIELTKRLAELEIQAHELAEEPFNLA-STKQLQAILYEKQKLPVL 603

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308
             + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+  +
Sbjct: 604 KKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPFSGRVHTS 662

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 + TGR S      QN+P                                +R   
Sbjct: 663 Y-HQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIRQAF 697

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G ++V AD + IE R++A ++ ++  +KAFA G+DI+  T A+ F   +DKV+ EQ
Sbjct: 698 IAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQ 757

Query: 429 RAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHL 483
           R   K +   L Y       A+            +  + +         E   Q  +   
Sbjct: 758 RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAAEQG 817

Query: 484 WM--------------------QDQYPEFAVKDKLIGTACELVKKAWRA-------KHQG 516
           ++                    +      A+   + GTA +++K+A          + + 
Sbjct: 818 YVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWLQGQDEP 877

Query: 517 VLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVMR 552
           ++++   + +     + E     S++R+  +    M 
Sbjct: 878 LVRMIMQVHDELVFEIHESVIEASSQRIRELMENSMT 914


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 107/570 (18%), Positives = 198/570 (34%), Gaps = 101/570 (17%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + GV AY         A+ + D P +L    ++  +   L   L D+    V  N  ++
Sbjct: 379 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 428

Query: 77  RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
             +  +  GI++   +   T + +   N +        LAL F +H     E        
Sbjct: 429 MSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQ------- 479

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184
               I          N ++  +    Y   D + T  L  RL+              + E
Sbjct: 480 ----IAGKGKKQLTFNQIELGEA-SPYAAEDADVTLRLHNRLMENIEQDEKLKTIYGEIE 534

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   I   G  ID  L+    + IA    +L++   ++ +    +      L+  
Sbjct: 535 VPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAI 593

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299
           LF   G+ ++  +     S  +   + +LA D  L +L      + KL     + L + +
Sbjct: 594 LFEKMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMI 652

Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 653 NAETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 687

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+   
Sbjct: 688 EEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIG 747

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473
             I+ V+ EQR   K +   L Y       AK            +  + +         E
Sbjct: 748 VDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYME 807

Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510
           D   A S   +++  Y                       A+   + GTA +++KKA    
Sbjct: 808 DTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 867

Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGG 536
               +A+  G ++L   + +     V+E  
Sbjct: 868 DEWIQAEGDGRVKLLMQVHDELVFEVEESA 897


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 109/584 (18%), Positives = 192/584 (32%), Gaps = 121/584 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S  PL           K G  AY          + +   P +L      +A  + 
Sbjct: 346 DTETTSLDPLTAKLVGMSFSIKAGEAAY------LPLTHDYPGAPDQLP----FAATLAR 395

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  V  N  +++ +     GI +       T + +       +     LA+
Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRTHGMDDLAM 453

Query: 117 N-FSEHLTKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                     E+  GK      F + ++                +   EY   D + T +
Sbjct: 454 RHLGVQTITYEQVAGKGAKQVSFSQVAL----------------EQASEYAAEDADVTLQ 497

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L P               E  +  +  TI   G  ID D++ +    I Q+   L+
Sbjct: 498 LHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALE 557

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +   +L      +      L+  LF   GI  +  +     S      + +LA D  L +
Sbjct: 558 QQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPST-DEDVLQELALDYPLPK 615

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L   ++   GR+  +      + TGR S      QN+P +  
Sbjct: 616 VLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYS-QAVAVTGRLSSSDPNLQNIPVRT- 673

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G  +V AD + IE R++A ++ +
Sbjct: 674 -----------------------AEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           D  + AFA GEDI+  T A+ F    D VS EQR   KV+   L Y       A+     
Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIE 770

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQ----------YP 490
                  ++++         +    +  +             LW+ +             
Sbjct: 771 RQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAE 830

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
             A+   + GTA +L+K A  A            + ++Q+  +L
Sbjct: 831 RAAINAPMQGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDEL 874



 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
           Q  + D++   M          K    +++ VHDE+V E PD     V   L  LM    
Sbjct: 839 QGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDV- 897

Query: 656 SWAK-GLPLKAE 666
             AK  +PL AE
Sbjct: 898 --AKLDVPLLAE 907


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 107/567 (18%), Positives = 197/567 (34%), Gaps = 101/567 (17%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           GV AY         A+ + D P +L    ++  +   L   L D+    V  N  ++  +
Sbjct: 382 GVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDAQAKVGQNLKYDMSV 431

Query: 80  FKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
             +  GI++   +   T + +   N +        LAL F +H     E           
Sbjct: 432 LARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQ---------- 479

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187
            I          N ++  +    Y   D + T  L  RL+              + E  L
Sbjct: 480 -IAGKGKKQLTFNQIELGEA-SPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPL 537

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   I   G  ID  L+    + IA    +L++   ++ +    +      L+  LF 
Sbjct: 538 IPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAILFE 596

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-S 301
             G+ ++  +     S  +   + +LA D  L +L      + KL     + L + ++  
Sbjct: 597 KMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMINAE 655

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+  +      + TGR S      QN+P +                            
Sbjct: 656 TGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEG 690

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+  T A+     I
Sbjct: 691 RRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDI 750

Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWE 476
           + V+ EQR   K +   L Y       AK            +  + +         ED  
Sbjct: 751 ESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDTR 810

Query: 477 QAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW------ 510
            A S   +++  Y                       A+   + GTA +++KKA       
Sbjct: 811 SAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEW 870

Query: 511 -RAKHQGVLQLWKDLTEGFACVVQEGG 536
            +A+  G ++L   + +     V+E  
Sbjct: 871 IQAEGDGRVKLLMQVHDELVFEVEESA 897


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/605 (16%), Positives = 190/605 (31%), Gaps = 122/605 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD--- 56
            +D ET S           Y + A +   +++                     +P D   
Sbjct: 345 SVDTETTSLN---------YMD-AELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYVL 394

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC 113
             L   L  ET   +  N  ++  +  +  GI +   R+  T + +      +       
Sbjct: 395 NALKPILEAETPAKIGQNLKYDMNVLARY-GITLSGVRF-DTMLESYVLDAAATRHDMDS 452

Query: 114 LALNFSEHLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           LAL +    T   +   GK      F +  +                     Y   D + 
Sbjct: 453 LALKYLGQKTIAFEDVAGKGAKQITFDQVPLLQAAT----------------YAAEDADV 496

Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + L P             + E  L  +   +   G RID+  + +    + +   
Sbjct: 497 TLKLHQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMA 556

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L+ +   L       +     L   L+    + ++  +     S    S +  LA D  
Sbjct: 557 ELEAEAHTLAGQPFNLA-SPKQLGEILYDQLQLPILKKTPKGAPST-DESVLQDLAHDYE 614

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L ++        KL     + L E V+   GR+  +      + TGR S      QN+P 
Sbjct: 615 LPKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSY-HQAVASTGRLSSSDPNLQNIPI 673

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +  S                           +R   IA  G  +V AD + IE R++A +
Sbjct: 674 RNES------------------------GRKIRQAFIAEPGFTMVAADYSQIELRIMAHL 709

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448
           + ++  I AFA G DI+  T A+    P++ V+ + R   K +   L Y       A+  
Sbjct: 710 SDDESLIDAFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAFGLARQL 769

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQD 487
                     + ++         + +  + ++H                         + 
Sbjct: 770 GISREQAQAYMDRYFHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQ 829

Query: 488 QYPEFAVKDKLIGTACELVKKAWR----------AKHQGVLQLWKDLTEGFACVVQEGGS 537
                A+   + G+A +++K+A            AK + ++Q+  +L       V     
Sbjct: 830 AAERVAINAPMQGSAADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVFEVPNDVVPDAI 889

Query: 538 ISARR 542
              ++
Sbjct: 890 EQIQK 894


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 109/604 (18%), Positives = 211/604 (34%), Gaps = 119/604 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQS--AMPSDLLQY- 60
           +D ET S   +           A I   + A +++         T+ S   +  ++    
Sbjct: 288 LDTETTS-LDIM---------AAEIVGISLAIEEKKAAYIPFIHTDGSVQLLRDEVFAAI 337

Query: 61  ---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL 116
              L +  +  +  N  ++  + K   GI +    +  T + +              L+L
Sbjct: 338 KPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAY-DTMLESYILNSNAGRHDMDTLSL 395

Query: 117 NFSEHLTKMEE---GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   E   GK     RF +  +D                    Y   D + T +
Sbjct: 396 KYLGHKTITFEDIAGKGAKQLRFDQIPVDKASV----------------YAAEDADITLQ 439

Query: 173 LFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L  +L P+         +D E  L  +   +  RG  ID + + +  + + +  K L+E+
Sbjct: 440 LHHKLYPMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEE 499

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            ++L       S     L+  LF    I ++  +  T +   + S + +LA D  L  + 
Sbjct: 500 AIQLAGKPFNLS-SPKQLQEILFNEQKIPVIAKTP-TGQPSTAESVLQELAFDYRLAAVI 557

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L + ++   GR+  +      + TGR S      QN+P +    
Sbjct: 558 LEHRGLTKLVSTYIDALPKKINAETGRVHTSYN-QAVAATGRLSSSEPNLQNIPIR---- 612

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  IA   + ++ AD + IE R++A ++ ++ 
Sbjct: 613 --------------------NEEGRLIRTAFIAPPEQVILAADYSQIELRIMAHLSQDEN 652

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFANG DI+  T A+ F+   ++V+ EQR   K +   L Y       AK       
Sbjct: 653 LLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQ 712

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492
                +  + Q       + +  + ++H                     +L  Q      
Sbjct: 713 DAQNYIDTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGRRLYLPEINTRNLMRQKAAERT 772

Query: 493 AVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           A+   + GTA +++KKA                + ++Q+  +L    A    E  ++  R
Sbjct: 773 AINAPMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFEVASQEIEASTVKIR 832

Query: 542 RVAN 545
           ++  
Sbjct: 833 QLME 836



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 17/122 (13%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
            +V        ++     ++     RRL   ++          T  LMR++         
Sbjct: 726 PKVLEYMNRTRQQAHEQGYVETLCGRRLYLPEI---------NTRNLMRQKAAERTAINA 776

Query: 601 IVQAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMT 652
            +Q  + DI+ + M N  K           +++ VHDE+V E        S   +  LM 
Sbjct: 777 PMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFEVASQEIEASTVKIRQLME 836

Query: 653 KN 654
           + 
Sbjct: 837 QA 838


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 104/597 (17%), Positives = 199/597 (33%), Gaps = 108/597 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T         
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA  +  H T   E  A   +  + + +  P            +   EY   D + T 
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509

Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L      E             L  +   +   G  ID D +      IA     L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L 
Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELP 627

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L + V+S  GR+  +      + TGR S      QN+P + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 686 -----------------------NEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +    
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489
                   +  + Q   S   F    +A++                      +   +   
Sbjct: 783 SRLDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              A+   + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 96/532 (18%), Positives = 182/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 414 IKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 472 RYLGHETIAFESIAGKGK-GQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 519

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 579

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +      +  
Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 792

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              +  + Q   S   F    +A++                      +   +      A+
Sbjct: 793 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 853 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 904


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 190/558 (34%), Gaps = 105/558 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  +   L   L D+    V  N  ++  +  +  GI+
Sbjct: 128 AAYVPVAHDYLDAPEQL----DRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY-GIE 182

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141
           +   ++  T + +   N +        LAL F +H          +GK  +  F +  + 
Sbjct: 183 MKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIEL- 239

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                          +    Y   D + T  L  RL               + E  L  +
Sbjct: 240 ---------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPV 284

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID   +      IA   ++L++   ++ +    +      L+  LF   G
Sbjct: 285 LSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAILFEKMG 343

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + +V  +     S  +   + +LA D  L +L      + KL     + L + ++   GR
Sbjct: 344 LPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 402

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 403 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 437

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     ID+V
Sbjct: 438 RQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQV 497

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474
           S EQR   K +   L Y       AK            + ++ +       + +      
Sbjct: 498 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 557

Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515
                            + +S +   +      A+   + GTA +++KKA     Q    
Sbjct: 558 ADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 617

Query: 516 ---GVLQLWKDLTEGFAC 530
              G ++L   + +    
Sbjct: 618 EGNGRVKLLMQVHDELVF 635


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 107/563 (19%), Positives = 191/563 (33%), Gaps = 103/563 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + + D P +L    ++  + + L   L +  +  V  N  ++  +  +  GI 
Sbjct: 338 AAYVPVGHDYLDAPQQL----DRDWVLAQLKPLLENPQLAKVGQNLKYDASVVARY-GIT 392

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +       T + +   N +        LAL F +H     E   GK      F +  +  
Sbjct: 393 MRGIA-HDTMLASYVYNSVGGKQDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIDL-- 449

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLD 191
                         +    Y   D + T  L  RL  L            D E  L  + 
Sbjct: 450 --------------EQAAPYAAEDADVTLRLHHRLQALLEADAPLFGVYRDIEVPLVPVL 495

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  ID  L+    + IAQ   +L+    +L D     S     L+  LF    +
Sbjct: 496 SRMERTGVLIDDQLLAIQSQEIAQRLVELERKAYELADQEFNLS-SPKQLQTILFEQMKL 554

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRL 305
            +V  +     S  +   + +LA D  L  +      + KL     + L + ++   GR+
Sbjct: 555 PVVKKTPSGTPST-NEEVLQELALDYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRV 613

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 614 HTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NQEGRRIR 648

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA +G K++  D + IE R++A ++G+   + AF  G+DI+  T A+     ID+V+
Sbjct: 649 QAFIAPSGWKIMAVDYSQIELRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQVT 708

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            EQR   K +   L Y       AK      S     + ++ +       + +       
Sbjct: 709 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRSEAQHYMDKYFERYPGVLRYMEETRSMAA 768

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513
                           + +S +   +      A+   + GTA +++KKA          +
Sbjct: 769 EQGYVETLFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDNWIETE 828

Query: 514 HQGVLQLWKDLTEGFACVVQEGG 536
            QG ++L   + +     VQE  
Sbjct: 829 GQGRVKLLMQVHDELVFEVQESA 851


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 110/578 (19%), Positives = 197/578 (34%), Gaps = 116/578 (20%)

Query: 5   FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            ID ET S +P+           + GV AY         A+ + D P++L     ++++ 
Sbjct: 343 AIDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L D++   V  N  ++  +F    G+ +       T + +       S     L
Sbjct: 393 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 450

Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           AL   +      ++  GK      F +  I                    EY   D + T
Sbjct: 451 ALRHLNRKTMTFQDVCGKGASQLCFDQVDI----------------ARATEYAAEDADIT 494

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L +R+ P               E    ++ Q +   G  ID  L+      + +   +
Sbjct: 495 LQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLE 554

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           +++   +L      +      +    F    + +V  +     S      + +LA+D  L
Sbjct: 555 IEQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPST-DEEVLQKLAEDYPL 612

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L + +    GR+         + TGR S      QN+P +
Sbjct: 613 PKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYA-QAVAVTGRLSSNDPNLQNIPIR 671

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  +V AD + IE R++A I+
Sbjct: 672 ------------------------NAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHIS 707

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  ++AFA GEDI+  T A+ F      VS EQR   KV+   L Y       A    
Sbjct: 708 EDENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLG 767

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488
              +     ++++         + D  + E+             LW+          +  
Sbjct: 768 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQG 827

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
               A+   + GTA +L+K A  A     +Q W +  +
Sbjct: 828 AERAAINAPMQGTAADLIKLAMIA-----VQDWLEAEK 860



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           Q  + D++   M          K    +++ VHDE+V E P+T    V   L  LM
Sbjct: 838 QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELM 893


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 110/578 (19%), Positives = 197/578 (34%), Gaps = 116/578 (20%)

Query: 5   FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            ID ET S +P+           + GV AY         A+ + D P++L     ++++ 
Sbjct: 337 AIDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVL 386

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L D++   V  N  ++  +F    G+ +       T + +       S     L
Sbjct: 387 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 444

Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           AL   +      ++  GK      F +  I                    EY   D + T
Sbjct: 445 ALRHLNRKTMTFQDVCGKGASQLCFDQVDI----------------ARATEYAAEDADIT 488

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L +R+ P               E    ++ Q +   G  ID  L+      + +   +
Sbjct: 489 LQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLE 548

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           +++   +L      +      +    F    + +V  +     S      + +LA+D  L
Sbjct: 549 IEQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPST-DEEVLQKLAEDYPL 606

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L + +    GR+         + TGR S      QN+P +
Sbjct: 607 PKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYA-QAVAVTGRLSSNDPNLQNIPIR 665

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  +V AD + IE R++A I+
Sbjct: 666 ------------------------NAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHIS 701

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  ++AFA GEDI+  T A+ F      VS EQR   KV+   L Y       A    
Sbjct: 702 EDENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLG 761

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488
              +     ++++         + D  + E+             LW+          +  
Sbjct: 762 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQG 821

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
               A+   + GTA +L+K A  A     +Q W +  +
Sbjct: 822 AERAAINAPMQGTAADLIKLAMIA-----VQDWLEAEK 854



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           Q  + D++   M          K    +++ VHDE+V E P+T    V   L  LM
Sbjct: 832 QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELM 887


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 107/574 (18%), Positives = 193/574 (33%), Gaps = 100/574 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       +  V     A  A      + +     +L     +  + + L   L 
Sbjct: 347 DTETTSLNYMEARVVGVSFAVEAGSAAYVPFGHDYVGVEQQL----SEDWVLAQLKPLLE 402

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D +   V  N  ++R +     GI++   ++  T + +        L +     +     
Sbjct: 403 DSSRAKVGQNLKYDRNVLANH-GIELNGIQF-DTMLESYV------LNSTATRHDMDSLA 454

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K  +   +  +F    I          N +Q  Q  G Y   D + T +L + L P   
Sbjct: 455 RKYLDVGTI--KF--EDIAGKGAKQLTFNQIQL-QQAGPYAAEDADITLQLHEVLWPKLA 509

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                       E  L  +   I   G  +  DL+ K    +    ++L+++  +L    
Sbjct: 510 AIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRLQQLEKEAHELAGEA 569

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              S     L   LF    + ++  +     S      + +LA D  L R+      + K
Sbjct: 570 FNLS-SPKQLGHILFDKLELPVIKKTPKGAASTAEE-VLAELALDYPLPRILMEYRGLSK 627

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + +S   GR+  +      + TGR S      QN+P +            
Sbjct: 628 LKSTYTDKLPQMISEVTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT----------- 675

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR   +A +G K+V AD + IE R++A ++ ++  +KAFA G
Sbjct: 676 -------------EEGRKVRQAFVARDGYKIVAADYSQIELRIMAHLSQDNGLLKAFAEG 722

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
           +DI+  T A+ F   +++VS EQR   K +   L Y       AK            +  
Sbjct: 723 KDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIYGMSAFGLAKQIDVGRHEAQEYIDT 782

Query: 462 FSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIG 500
           +         + D  +A++                          +      A+   + G
Sbjct: 783 YFSRYPGVRDYMDNTRADAAERGYVETLYGRRLYLPEINASNGMRRQAAERTAINAPMQG 842

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++KKA               Q ++Q+  +L
Sbjct: 843 TAADIIKKAMVDVDRWLLESDVDGQMIMQVHDEL 876



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMT 652
           Q  + DI+ + M +  +          +++ VHDE+V E  +    + V ++  LM+
Sbjct: 841 QGTAADIIKKAMVDVDRWLLESDVDGQMIMQVHDELVFEVAEPSLDYLVSSVNDLMS 897


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 104/597 (17%), Positives = 204/597 (34%), Gaps = 108/597 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T         
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA  +  H T   E  A   +  + + +  P            +   EY   D + T 
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509

Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L      E             L  +   +   G  ID D +      IA     L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++    L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L 
Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELP 627

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L + V+S  GR+  +      + TGR S      QN+P + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 686 -----------------------NEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---------- 444
           +   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y             
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782

Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQY 489
               A+ +  +       +QQF  ++++ +  + +               S +   +   
Sbjct: 783 SRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              A+   + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 188/572 (32%), Gaps = 104/572 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L D      + + L   L D  +  +  N  F+R +  +    D
Sbjct: 382 AAYLPLAHDYLDAPQQL-DL---HEVLTALKPLLEDANLPKIGQNLKFDRGVLARY---D 434

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSID 141
           +  +  +  ++L     N +        LA   L++     +   GK      F +  + 
Sbjct: 435 VVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLSYKTTTFEDIAGKGKKQLTFNQIPL- 493

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                          +   +Y   D + T  L + + P               E  L  +
Sbjct: 494 ---------------EEAAKYAAEDADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPV 538

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ID   + +    I     +L++    L D     +     L++ LF    
Sbjct: 539 LSRMERTGVLIDARTLAEHSREITVRLDELEKSAYALADEEFNLA-SPKQLQVILFEKMK 597

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           + ++  +     S  +   + +LA++  L R+      + KL     + L + V+    R
Sbjct: 598 LPVLKKTPNGAPST-NEEVLEELAENHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNR 656

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P                                +
Sbjct: 657 VHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRI 691

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IA  G +++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V
Sbjct: 692 RQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEHV 751

Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475
           + EQR   K +   L Y   A    +            +  + +       + +      
Sbjct: 752 TGEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYMDLYFERYPGVLNYMERTRQQA 811

Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV-- 517
                            + +S +   +      A+   + GTA +++K A  A    +  
Sbjct: 812 AEHGFVETLEGRRLYLPEIKSRNAMRRKASEREAINAPMQGTAADIIKLAMIAVDDWIVS 871

Query: 518 ----LQLWKDLTEGFACVVQEGGSISARRVAN 545
               +++   + +     V E     A +   
Sbjct: 872 EKPNVRMIMQVHDELVFEVHESELAMAEQKIR 903



 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
            +     RRL   ++K   +    A+    RE           +Q  + DI+   M    
Sbjct: 816 FVETLEGRRLYLPEIKSRNAMRRKAS---EREAINAP------MQGTAADIIKLAMIAVD 866

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTK 653
                 K    +++ VHDE+V E  ++    +   + +LM +
Sbjct: 867 DWIVSEKPNVRMIMQVHDELVFEVHESELAMAEQKIRALMEQ 908


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 97/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            Q   EY   D + T +L + 
Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LQQATEYAAEDADVTMKLQQA 514

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 632

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 686 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y                 A
Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 787

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494
           + +  +       +QQF  ++++ +  + +               S +   +      A+
Sbjct: 788 QKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 848 NAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/600 (18%), Positives = 207/600 (34%), Gaps = 111/600 (18%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + ID ET S       L  +     A +A     A+ + D P+++    ++++    L  
Sbjct: 341 IAIDTETTSLNYMEAELVGLSFATEAGKAAYLPLAHDYLDAPLQI----DKASALEKLRP 396

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L  +T   V  N  ++  +     GI +   R+  T + +   N + S      LAL +
Sbjct: 397 ILEGDTPQKVGQNLKYDMSILANA-GISLKGIRF-DTMLESYVFNSIASRHDMDGLALKY 454

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +D                + G Y   D + T  L 
Sbjct: 455 LGHKNISFEEVAGKGAKQLTFNQVHLD----------------IAGPYAAEDADITLRLH 498

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   +  +G  ID  L+ +    +A++   L+  
Sbjct: 499 QHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLDDLENK 558

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++ +     +     L+   F   G  +   +     S  +   + +LA D  L ++ 
Sbjct: 559 AYEIAEEKFNLA-SPKQLQTLFFEKLGYPIKKKTPKGAPST-AEDVLIELALDYPLPKVI 616

Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V++  GR+  +     A+ TGR S      QN+P +    
Sbjct: 617 LEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 673 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 711

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA G+DI+  T A+ F    ++V+ EQR   K +   L Y       AK      +
Sbjct: 712 LLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRN 771

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 772 EAQKYIDTYFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRRQAAERA 831

Query: 493 AVKDKLIGTACELVKKAWRAKHQ-----------GVLQLWKDLTEGFACVVQEGGSISAR 541
           A+   + GTA +++KKA  A HQ            ++Q+  +L         E       
Sbjct: 832 AINAPMQGTAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVC 891



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M          T+    +++ VHDE+V E  +    ++   +C LM + 
Sbjct: 838 QGTAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQA 897


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 104/582 (17%), Positives = 199/582 (34%), Gaps = 118/582 (20%)

Query: 1   MSKL------FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKL 44
           M +L        D ET S   +           K G  AY         A+ + D P + 
Sbjct: 318 MKRLETAELFAFDTETTSLDYMQAQVVGVSFAVKTGEAAY------LPLAHDYADAPQQ- 370

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   +   L   L       + H+  ++R +     GI++       T + +    
Sbjct: 371 --LDRDETL-KRLKPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIE-HDTMLESYVLN 425

Query: 105 LPSS-LKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLF 159
             +S      LA  + ++ T   E   GK      F +  I+    D T           
Sbjct: 426 STASRHDMDSLAQKYLDYRTTHYEEVAGKGAKQIPFSQVRIE----DAT----------- 470

Query: 160 GEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
             Y   D + T  L + L P             + E  L  +   +   G ++D + +  
Sbjct: 471 -PYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDAERLFA 529

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
               +A+   +++ +  ++  G   +      ++  L+    + ++  +     S  +  
Sbjct: 530 QSHELAERMGQIEREAHEVAGGAF-NLGSPKQIQEILYERQKLPVLRKTPKGQPST-AED 587

Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSG 322
            + QLA D  L +L     ++ KL     + L E +  D GR+  +      + TGR S 
Sbjct: 588 VLEQLALDYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSY-HQAVASTGRLSS 646

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +                              +R   +A +G++LV AD +
Sbjct: 647 SDPNLQNIPIRT------------------------EEGRRIRQAFVAPSGRRLVAADYS 682

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++G+   ++AFA G+DI+  T A+ F   +D+VS EQR   K +   L Y 
Sbjct: 683 QIELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYG 742

Query: 443 GG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477
                 A+            + ++         + +                        
Sbjct: 743 MSAFGLARQLGIERGDAQDYVDRYFARYPGVKDYMESTREKARDLGYVETLFGRRLYLPD 802

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             + +  ++ Q    A+   + GTA +++K+A     Q + +
Sbjct: 803 INARNGQIRAQAERVAINAPMQGTAADIIKRAMIQVDQWIRE 844



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGY 622
            RRL   D+    +      +Q  R            +Q  + DI+   M    +     
Sbjct: 795 GRRLYLPDI---NARNGQIRAQAERVAINAP------MQGTAADIIKRAMIQVDQWIRES 845

Query: 623 DI----VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
            I    +L VHDE+V E  +     V   LC  M++ 
Sbjct: 846 RIPAVMILQVHDELVLEVDEDAVDKVREELCVRMSQA 882


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 472 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 519

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 579

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y                 A
Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 792

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494
           + +  +       +QQF  +++  +  + +               S +   +      A+
Sbjct: 793 QKYMDLYFQRYPSVQQFMTDIREKAKTQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852

Query: 495 KDKLIGTACELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +     +++   + +     V+       R
Sbjct: 853 NAPMQGTAADIIKRAMIKLDEVIHHDPNIEMIMQVHDELVFEVRSEKVAFFR 904


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/503 (19%), Positives = 179/503 (35%), Gaps = 83/503 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 409 IKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 467 RYLGHETIAFESIAGKGK-NQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID + +      IA     L+E   
Sbjct: 515 LWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAY 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +  T  L+  LF   G+ ++  +     S  +   + +LA    L ++   
Sbjct: 575 ELAGQPFNLA-STKQLQEILFDKLGLPILQKTPKGAPST-NEEVLEELAYSHELPKILVE 632

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 686 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y                 A
Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDA 787

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494
           K +  +       +QQF  +++  +  + +               S +   +      A+
Sbjct: 788 KKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847

Query: 495 KDKLIGTACELVKKAWRAKHQGV 517
              + GTA +++K+A     + +
Sbjct: 848 NAPMQGTAADIIKRAMIKLDEVI 870



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 603 QAISRDILCEGMKNATKNGY-----DIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651
           Q  + DI+   M    +  Y     ++++ VHDE+V E   +   F    +   M
Sbjct: 852 QGTAADIIKRAMIKLDEVIYHDPDIEMIMQVHDELVFEVRSEKVEFFREQIKQQM 906


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/532 (17%), Positives = 179/532 (33%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 472 RYLGHETIAFESIAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 519

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID + +      IA     L+E   
Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAY 579

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AF+ G+DI+ +T A+ F   +D+++ EQR   K +   L Y   A    +      +  
Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 792

Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494
              +  + Q   S   F                            S +   +      A+
Sbjct: 793 QKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 853 NAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 904


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/547 (17%), Positives = 183/547 (33%), Gaps = 100/547 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L D+ +  +  N  F++ +  +  GID+    +  T + +     +        L+
Sbjct: 421 LKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMDSLS 478

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F +  +                     Y   D + T 
Sbjct: 479 ERYLQHKTITFEEIAGKGKNQLTFDQIPL----------------AQASVYAAEDADVTL 522

Query: 172 ELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L    +            +  L  +   I   G  ID  ++ +    + Q   +L
Sbjct: 523 RLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLIDTTILAEHSRELTQRLAEL 582

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +    +L       S     L   L+    + ++  +     S  +   + +LA D  L 
Sbjct: 583 EVQAHELAGEAFNLS-SPKQLGAILYEKLQLPVIKKTPKGAPST-NEEVLAELALDYPLP 640

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +L      + KL     + L + ++   R   T      + TGR S      QN+P    
Sbjct: 641 KLILEHRGLAKLKSTYTDKLPQMINPLTRRVHTSYHQAVTATGRLSSSDPNLQNIP---- 696

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G +++ AD + IE R++A ++ +
Sbjct: 697 --------------------VRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAHLSRD 736

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----------- 444
              ++AF++G DI+  T A+ F  P+D+V+ EQR   K +   L Y              
Sbjct: 737 AGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQLAIP 796

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYP 490
              A+ +  +       +Q++ +  +  +  + +               S ++  +    
Sbjct: 797 RSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDGRRLYLPDIHSRNVNSRKAAE 856

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + GTA +++KKA  A              ++Q+  +L       V +  S   
Sbjct: 857 RAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVFEVHHSVLDEASAKI 916

Query: 541 RRVANVP 547
           R +    
Sbjct: 917 RNLMEGC 923


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/559 (17%), Positives = 190/559 (33%), Gaps = 99/559 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   L    V  +  N  ++  +F    G+ +    +  T + + T           LA
Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDELA 491

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  H T   E   GK      F K +ID                +  +Y   D + T 
Sbjct: 492 DRYLGHKTIEFEEIAGKGKNQLTFDKIAID----------------IASQYAAEDADVTM 535

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +L
Sbjct: 536 KLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSEL 595

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++ 
Sbjct: 596 EQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVP 654

Query: 281 RLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +L      + KL     + L   ++   GR+  +      + TGR S      QN+P + 
Sbjct: 655 KLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 712

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G K+V AD + IE R++A +A 
Sbjct: 713 -----------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLAN 749

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +     
Sbjct: 750 DEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGI 809

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
             +     ++++ Q   +   F                         + +S +   +   
Sbjct: 810 SRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAA 869

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+   + GTA +++K A     + +        +    ++Q    +    V  V   
Sbjct: 870 ERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DDNIKMIMQ----VHDELVFEVKEE 920

Query: 550 VMRRHKRDVHIVLPSSRRL 568
           ++  + + +   +  + +L
Sbjct: 921 LIEHYSQLIKAEMEKAIQL 939


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 193/584 (33%), Gaps = 105/584 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  +     A +A     A+ +   P +L        +   L   L 
Sbjct: 337 DTETTSLDYMQAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQL----SLEFVMQKLGPILA 392

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           D     V  N  +++ +     G  +   ++  T + +     + +      LAL F  H
Sbjct: 393 DAKKAKVGQNLKYDKSVLANA-GYQLNGIKF-DTMLESYVLNSVGTRHDMDSLALKFLGH 450

Query: 122 LT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                +   GK      F +  +D                  G Y   D + T  L + L
Sbjct: 451 KNISFEDIAGKGKKQLTFNQVELDKA----------------GPYAAEDADITLRLHQVL 494

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P             D E  L  +   I   G  ID  ++    + + +   +L+++  +
Sbjct: 495 WPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLLELEKEAYE 554

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +       S     L++ LF    + ++  +     S      + +LA D  L ++    
Sbjct: 555 IAGEPFNLS-SPKQLQVLLFEKLELPIIKKTPKGAPSTAEE-VLQELAHDYPLPKVIIEH 612

Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             + KL     + L   V+   +   T      + TGR S      QN+P +        
Sbjct: 613 RGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRS------- 665

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA++G K+V AD + IE R++A ++ +   + A
Sbjct: 666 -----------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSA 708

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FANG D++  T A+ F   +++V+ + R   K +   L Y       A+           
Sbjct: 709 FANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQH 768

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            + ++ +       + +                       + ++ +   +      A+  
Sbjct: 769 YIDKYFERFPGVLEYMETTREKAAESGYVETIFGRRLYLPEIKAQNGARRKGAERAAINA 828

Query: 497 KLIGTACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQ 533
            + GTA +++KKA  + H          ++L   + +     ++
Sbjct: 829 PMQGTAADIIKKAMLSVHSWVYEQAPNTVKLLMQVHDELVFEIK 872


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/597 (16%), Positives = 192/597 (32%), Gaps = 117/597 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56
           D ET S   L          QA I   ++A                          + + 
Sbjct: 342 DTETTSLDYL----------QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNVLAV 391

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +     +  N  ++  +     GI +    +  T + +      +      LA 
Sbjct: 392 LKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMAF-DTMLESYVLNSTTKHDMDSLAQ 449

Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            + +  T   +   GK      F +  +                +    Y   D + T +
Sbjct: 450 IYLQKTTITFEDVAGKGKKQLSFNQIPL----------------EHATPYACEDADITLQ 493

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L               D E  L  +   +   G +ID  L+ +    +A   ++L+
Sbjct: 494 LHQNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQLE 553

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +   +       +      L+  LF    + ++  +     S  +   + +LA D  L +
Sbjct: 554 QAAYEEAGTEF-NLNSPKQLQTILFDKLSLPVLKKTPKKDPST-AVEVLEELAIDYPLPQ 611

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L     ++ KL     +TL + ++   GR+  +      + TGR S      QN+P +  
Sbjct: 612 LILIYRSLSKLKSTYTDTLPQQINPKTGRVHTSY-HQAVTTTGRLSSTNPNLQNIPIRS- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  L+ AD + IE R++A ++ +
Sbjct: 670 -----------------------AEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSED 706

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
           +  + A   GEDI+    A+ F+  +D+V+ EQR   K +   L Y     G AK     
Sbjct: 707 EKLLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNFGLMYGMQAFGLAKQLGIE 766

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                + +  +         + D                       + ++ H+  +    
Sbjct: 767 RHQAQIYMDAYFARYPGVKAYMDDMRVLAKQQGYVETVFGRRLYIPEIKTRHIGRRQAAE 826

Query: 491 EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
             A+   + GTA +L+K+A      W  K    +++   + +     + E     A+
Sbjct: 827 RTAINAPMQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDELVFEIAETVIEEAK 883


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/585 (17%), Positives = 195/585 (33%), Gaps = 105/585 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  +     A +A      + +   P +L     +  + + L   L 
Sbjct: 342 DTETTSLDYMQADLVGMSFAVEAGKAAYLPIGHDYLGAPEQL----SKEMVFAKLGPLLA 397

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           DE    V  N  +++ +  +  G+++   ++  T + +     + +      LAL +  H
Sbjct: 398 DEQRPKVGQNLKYDKSVLARA-GLELNGIKF-DTMLESYVLNSVGTRHDMDSLALKYLGH 455

Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                E   GK      F +  +D                    Y   D + T  L + L
Sbjct: 456 KNISFEEIAGKGKNQLTFNQIELDKAA----------------PYAAEDADITLRLHQML 499

Query: 178 IPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P  +            E  L  +   I   G  ID D++ K    I +   +L+++  +
Sbjct: 500 WPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLDELEKEAHE 559

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L       S     L++ LF    + ++  +     S      + +LA D  L +L    
Sbjct: 560 LAGEAFNLS-SPKQLQVILFEKHELPVIKKTPKGAPSTAEE-VLQELAHDYPLPKLIIEH 617

Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             + KL     + L   V++D +   T      + TGR S      QN+P +        
Sbjct: 618 RGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDPNLQNIPIRT------- 670

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A+ G K+  AD + IE R++A ++ +   + A
Sbjct: 671 -----------------EEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQDKGLLNA 713

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA G D++  T A+ F   + +V+ + R   K +   L Y       A+           
Sbjct: 714 FAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQH 773

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            + ++ +       + +                       +  + +   +      A+  
Sbjct: 774 YIDKYFERFPGVLEYMESTREKAAELGYVETLFGRRLYLPEINARNGASRKAAERAAINA 833

Query: 497 KLIGTACELVKK------AWRAKHQ-GVLQLWKDLTEGFACVVQE 534
            + GTA +++KK      AW        ++L   + +     ++E
Sbjct: 834 PMQGTAADIIKKAMITVNAWVKAQPANTVRLLMQVHDELVFEIKE 878



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 21/119 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
            RRL       + +  N A+ +   R            +Q  + DI+ + M         
Sbjct: 807 GRRLYLP----EINARNGASRKAAERAAINAP------MQGTAADIIKKAMITVNAWVKA 856

Query: 620 ---NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
              N   +++ VHDE+V E  +      +  +C LM++    A  +PL  E      ++
Sbjct: 857 QPANTVRLLMQVHDELVFEIKEECVGDYMQHICLLMSQAA--ALDVPLIVESDSGDNWQ 913


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/606 (17%), Positives = 193/606 (31%), Gaps = 111/606 (18%)

Query: 4    LFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQS-----AMP 54
            L ID ET S  P+     G+   AE  +A      +   +      D  E        +P
Sbjct: 454  LAIDTETTSLDPMLADLAGLSLCAEPGKAFYVPVGHTSGEGQ----DLFEGKGLLPGQLP 509

Query: 55   -----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
                   L   L D +++ +  N  ++ I+ K+  G+++               GL    
Sbjct: 510  IGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRPLDDTLLLSYVLDAGLTDHG 568

Query: 110  KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             +     +                 F    I        +A          EY   D + 
Sbjct: 569  MDVLSEKHLGHKPIPFSAVAGSGRTF----IGFARVAIDKAT---------EYAAEDADV 615

Query: 170  TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            T  L++ L P              ER +  +   +  RG  ID  L+ +L    AQ+  +
Sbjct: 616  TLRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSDFAQDMAR 675

Query: 220  LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD--- 276
             + +I +L      +      L   LF   G+     +  T     +   +  LA+    
Sbjct: 676  YEAEIYELAGEKF-NLGSPKQLGDILFGKLGLPGAKKT-ATGAWSTAAGVLEDLAEQGVD 733

Query: 277  ---LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
                IL+    +       + L   ++   GR+  +     A+ TGR S      QN+P 
Sbjct: 734  LAARILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYAL-AATTTGRLSSSEPNLQNIP- 791

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                       A   +R   IA  G+KLV AD + IE R+LA I
Sbjct: 792  -----------------------VRNEAGRKIRRAFIAPPGRKLVSADYSQIELRLLAHI 828

Query: 393  AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
            A       AFA   DI+  T ++ F  P++ +  E R   K +   + Y     G A   
Sbjct: 829  ADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQL 888

Query: 449  KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------- 492
                      ++++ +       + D  + ++            +  YP           
Sbjct: 889  AIPREEAAAYIKKYFERFPGIRAYMDDTKKKARENGYVETIFGRKCHYPRIKASNPSERA 948

Query: 493  -----AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537
                 A+   + G+A +++++A           +   Q +LQ+  +L         E   
Sbjct: 949  LNERAAINAPIQGSAADIIRRAMIHMEAALAAEKLSAQMLLQVHDELIFEVPDDEVEATI 1008

Query: 538  ISARRV 543
               R++
Sbjct: 1009 AVVRKI 1014


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/532 (18%), Positives = 182/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 632

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 686 ------------------NEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHLSGDQGLI 727

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +      +  
Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 787

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              +  + Q   S   F    +A++                      +   +      A+
Sbjct: 788 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 848 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/560 (17%), Positives = 193/560 (34%), Gaps = 101/560 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDEL 490

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F K +ID                   +Y   D + T
Sbjct: 491 AERYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P            ++ E  L  +   I   G  I+ + +L     I Q   +
Sbjct: 535 MKLHQVLAPELDKAPTLVKLFNEIEMPLVEVLSRIERNGVLIEPEKLLAQSAEIEQRLAE 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++
Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGRGHLV 653

Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   ++   GR+  +      + TGR S      QN+P +
Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I + G K+V AD + IE R++A +A
Sbjct: 713 ------------------------NEEGRRIRQAFITNKGYKIVAADYSQIELRIMAHLA 748

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +    
Sbjct: 749 NDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
              +     ++++ Q   +   F                         + +S +   +  
Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKA 868

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543
               A+   + GTA +++K A     + +      ++   + +     V+E       RV
Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKE------ERV 922

Query: 544 ANVPRLVMRRHKRDVHIVLP 563
            +  +L+    ++ + + +P
Sbjct: 923 EHYSQLIKAEMEKAIQLKVP 942


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 190/560 (33%), Gaps = 99/560 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F K +ID                   +Y   D + T
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +
Sbjct: 535 MKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSE 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ +      +   +  T  L+  LF   G+ ++  +     S           +  ++
Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653

Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   ++   GR+  +      + TGR S      QN+P +
Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K+V AD + IE R++A +A
Sbjct: 713 ------------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 748

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +    
Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
              +     ++ + Q   +   F                         + +S +   +  
Sbjct: 809 ISRADAKKYMELYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + GTA +++K A     + +        E    ++Q    +    V  V  
Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919

Query: 549 LVMRRHKRDVHIVLPSSRRL 568
            ++  + + +   +  + +L
Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/574 (17%), Positives = 190/574 (33%), Gaps = 102/574 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY----LRDETVMCVAHNSLFERILFKKT 83
           A      + + D PV+L          +D+L      L ++ ++ +  N  ++  +    
Sbjct: 380 AAYLPLGHDYLDAPVQLP--------LNDVLAAMKPILENDKILKIGQNLKYDAEVL--- 428

Query: 84  LGIDIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           L  DI  K     T + +      + +    +      HL         IA   K  +  
Sbjct: 429 LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTVSFEEIAGKGKKQLTF 488

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                    +  A +    Y   D + T  L + L P  +            E  L  + 
Sbjct: 489 ---------NQIALEQAANYAAEDADVTLLLHQALYPQLEAEPKLNHVFREIEMPLVPVL 539

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +  +G  ID  ++    + I     +L+++  +L       +  T  L+  LF    +
Sbjct: 540 VRMERKGVLIDAAVLAAQSKEITARLAELEKEAFELAGEEFNLA-STKQLQTILFEKLQL 598

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLR 306
            +V  +     S  +   + +LA +  L +L     ++ KL     + L   +S+  +  
Sbjct: 599 PVVKKTPSGAPST-NEEVLEELALNHALPKLLLEHRSLAKLKSTYTDKLPLMISTKTQRV 657

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T      + TGR S      QN+P +                              +R 
Sbjct: 658 HTSYHQAVTATGRLSSRDPNLQNIPVRT------------------------EEGRRIRQ 693

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             IA  G K+V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P+D+V+ 
Sbjct: 694 AFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDEVTS 753

Query: 427 EQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESH 481
           +QR   K +   L Y       A+            +  + +         E+     + 
Sbjct: 754 DQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRHQAAE 813

Query: 482 HLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKH------- 514
             ++                    +      A+   + GTA +++KKA  A         
Sbjct: 814 QGYVETLEGRRLYLADIKSSNGMRRKAAEREAINAPMQGTAADIIKKAMIAVDAWLQTEK 873

Query: 515 ---QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                ++Q+  +L         +  +   R +  
Sbjct: 874 PHADMLMQVHDELVFEVKESELDSVTTKIRELME 907



 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618
            RRL  +D+K              RE           +Q  + DI+ + M          
Sbjct: 822 GRRLYLADIKSSN---GMRRKAAEREAINAP------MQGTAADIIKKAMIAVDAWLQTE 872

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653
           K   D+++ VHDE+V E  ++   SV   +  LM +
Sbjct: 873 KPHADMLMQVHDELVFEVKESELDSVTTKIRELMEQ 908


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/615 (18%), Positives = 207/615 (33%), Gaps = 111/615 (18%)

Query: 7   DIETRSPQPLPKV--GVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           D+ET S   L     G+ ++A           A+ + D P +L    ++S + + L   L
Sbjct: 355 DLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLL 409

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFS 119
            D     V  N  F+R + K+    DI  +     ++L     N +        LA  + 
Sbjct: 410 EDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTLASRWL 466

Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
            H T   E   GK      F + +++   +                Y   D + T +L  
Sbjct: 467 NHKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHV 510

Query: 176 RLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++ P  + E+            L  +   I   G  I   ++    + +     +L+   
Sbjct: 511 KMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLAELELKA 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L       S     L+  LF   GI     + G   S  S   + +LA D  L ++  
Sbjct: 571 HELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVIL 628

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+  +      + TGR S      QN+P       
Sbjct: 629 EHRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP------- 680

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G ++V AD + IE R++A ++ +   
Sbjct: 681 -----------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGL 723

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454
           + AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y   A    +     A  
Sbjct: 724 LSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGE 783

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               +  + +       + +                         ++ +   +      A
Sbjct: 784 AKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAA 843

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++K+A  A         + L +  +  V+    +    V  V    +  
Sbjct: 844 INAPMQGTAADIIKRAMIAVD-------RWLEQQPSPEVKMIMQVHDELVFEVHADAVEA 896

Query: 554 HKRDVHIVLPSSRRL 568
               +  ++  S +L
Sbjct: 897 ACAQIRALMEGSMKL 911


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/559 (18%), Positives = 187/559 (33%), Gaps = 95/559 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  + + L   L D     +  N  F+  +  +  GI+
Sbjct: 374 AAYVPVAHDYLDAPAQL----DRDWVLAQLKPLLEDPNQAKIGQNLKFDASIVARY-GIE 428

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +    +  T + +   N +        LAL + EH     E            I      
Sbjct: 429 MQGIVF-DTMLESYVFNSVVGRHDMDSLALRYLEHKNISFE-----------EIAGKGKK 476

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195
               N +   Q  G Y   D + T  L   L P  +            E  L  +   + 
Sbjct: 477 QLTFNQIDLAQA-GPYAAEDADITLRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRME 535

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  +D  L+      IA    +L++   ++ D     S     L+  LF   G+ ++ 
Sbjct: 536 RTGVYVDSMLLGAQSTEIAARLDELEKKAFEIADQEFNLS-SPKQLQAILFEKMGLPVLK 594

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309
            +     S  +   + +LA D  L +L      + KL     + L + V+   GR+  + 
Sbjct: 595 KTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSY 653

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   +
Sbjct: 654 -HQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIRQAFV 688

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+     I++VS EQR
Sbjct: 689 AQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQR 748

Query: 430 AIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTFED----------- 474
              K +   L Y   A           +     +  + +       + +           
Sbjct: 749 RRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYMNVYFERYPGVLEYMESTRNTASEKGY 808

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH-------QGV 517
                         +S +   +      A+   + GTA +++K A  A         Q  
Sbjct: 809 VETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAVDNWVQQQPQDE 868

Query: 518 LQLWKDLTEGFACVVQEGG 536
           ++L   + +     V+E  
Sbjct: 869 VRLLMQVHDELVFEVKESA 887


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/584 (16%), Positives = 195/584 (33%), Gaps = 97/584 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  +     A +A     A+ +   P +L        +   L   L 
Sbjct: 337 DTETTSLEYMKAQLVGMSFAVKAGEAAYLPIAHDYPGAPEQL----SLEFVMQKLGPILA 392

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           DE    V  N  +++ +     G ++   ++  T + +   N + +      LAL +  H
Sbjct: 393 DENKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMDSLALKYLGH 450

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
                E            I          N ++  +    Y   D + T  L + L P  
Sbjct: 451 KNISFE-----------DIAGKGKKQLTFNQIEL-EKAAPYAAEDADITLRLHQVLWPKL 498

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      D E  L  +   I   G  ID +++    + + +   +L+++  ++   
Sbjct: 499 EADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATHSQRLGERLLELEKEAFEIAGE 558

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S     L++ LF    + ++  +     S      + +LA D  L ++      + 
Sbjct: 559 PFNLS-SPKQLQVLLFEKLELPVIKKTPKGAPSTAEE-VLQELAHDYPLPKVIIEHRGLS 616

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L   V+   +   T      + TGR S      QN+P +            
Sbjct: 617 KLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIPIRS----------- 665

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA++G K+V AD + IE R++A ++ +   + AFANG
Sbjct: 666 -------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANG 712

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   +++V+ + R   K +   L Y       A+            + +
Sbjct: 713 LDVHSATAAEVFGVELEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDK 772

Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + +                       +  + +   +      A+   + G
Sbjct: 773 YFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQG 832

Query: 501 TACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQEGGS 537
           TA +++KKA  + H          ++L   + +     ++   +
Sbjct: 833 TAADIIKKAMLSVHAWVNQQAPNTVKLLMQVHDELVFEIKTECT 876


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/527 (17%), Positives = 182/527 (34%), Gaps = 87/527 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L +  V  +  N  ++  +F    G+ +    +  T + + T           L
Sbjct: 395 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDEL 452

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A  +  H T   E  A   +  + ++D    D              +Y   D + T +L 
Sbjct: 453 ADRYLGHKTIEFEEIAGKGK-NQLTLDKIAIDVAS-----------QYAAEDADVTMKLH 500

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I   G  ID + +L     I Q   +L++ 
Sbjct: 501 QVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQL 560

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +      +   +  T  L+  LF   G+ ++  +     S           +  ++ +L 
Sbjct: 561 VHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLL 619

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   ++   GR+  +      + TGR S      QN+P +    
Sbjct: 620 MEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR---- 674

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA +G K+V AD + IE R++A +A ++ 
Sbjct: 675 --------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEG 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            I AFA G+DI+  T A+ F   +D+V+ EQR   K +   L Y       +       +
Sbjct: 715 MITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRA 774

Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492
                ++++ Q   +   F                         + +S +   +      
Sbjct: 775 DAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERV 834

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQE 534
           A+   + GTA +++K A     + +      ++   + +     V+E
Sbjct: 835 AINAPMQGTAADIIKVAMIGIDKAIRGDDNIKMIMQVHDELVFEVKE 881


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/525 (19%), Positives = 179/525 (34%), Gaps = 95/525 (18%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRW 93
           EPV L      +  P  L   L D +V  +A N+ ++ ++ +        +G D     +
Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVLRSSGVRVAGVGFDTMLASY 503

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           +      R++GL   L    L    + + T + +GK  +           P+D    +  
Sbjct: 504 VLDPGR-RSHGLDL-LALEQLGHTMTAYDTLVGKGKTQL-----------PFDVAPVDTA 550

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDL 203
           + +         DV+ T  L  +L P+           + E  L  +   +   G  IDL
Sbjct: 551 RDYS------CEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLAEMEWEGIAIDL 604

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
           D    L+   A ER ++++ I         +      LR  LF   G+ +   +      
Sbjct: 605 DWFASLKARFAAERGRVEQAIYAEAGEEF-NINSNPKLRAILFEKLGLPVKKKT--ATGP 661

Query: 264 ILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRT 317
               S + +LA++  +L  L      I KL     + L   V    R   T      S T
Sbjct: 662 STDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRLHTSYSQTVSAT 721

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P +                              +R   +   G +L+
Sbjct: 722 GRLSSHDPNLQNIPIR------------------------RELGRDIRRGFVPREGWRLL 757

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA ++ +   + AF  G DI+  T A  F  P++ V+ E RA  K +  
Sbjct: 758 SADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTINF 817

Query: 438 ALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
           A  Y  GA       +   +     ++ + +       F D                   
Sbjct: 818 ATIYGQGAHALSRQLRITNAEAKAFIETYFERFAGVRGFLDQCVVDARARGYVETLFKRR 877

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
               + +  +  ++      A    + G+A +L+K A       +
Sbjct: 878 RYIPELKERNFNIRAFGERVAQNAPIQGSAADLIKIAMINVRNAI 922


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/532 (18%), Positives = 181/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +     +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 409 IKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 632

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 686 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +      +  
Sbjct: 728 SAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 787

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              +  + Q   S   F    +A++                      +   +      A+
Sbjct: 788 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 848 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/557 (16%), Positives = 180/557 (32%), Gaps = 95/557 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + +   PV+L     ++ +   L   L D   + V  N  ++R +     GI+
Sbjct: 368 AAYVPFGHDYLGAPVQL----TEAVVLGKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIE 422

Query: 88  IPSKRWICTSVLARTNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +    +  T + +      +S      LA  +    T   E            I      
Sbjct: 423 LQGIAY-DTMLESYVLNSTASRHDMDSLARRYLNAETISFE-----------EIAGKGVK 470

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTIN 195
               N ++  +    Y   D + T  L + L              S+ E  L  +   + 
Sbjct: 471 QLTFNQIEL-EQAAPYAAEDADITLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARME 529

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  I+  L+ +  + I     +L++   +L       S     L   LF   G+ ++ 
Sbjct: 530 RLGTTIEPKLLHQQSQEIEVRLAELEKQAHELAGQEFNLS-SPKQLGEILFTKLGLPIIK 588

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309
            +     S      + +LA+   L +L      + KL     + L   +    GR+  + 
Sbjct: 589 KTPKGAPSTAEE-VLAELAETYELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSY 647

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   I
Sbjct: 648 -HQAVAATGRLSSTDPNLQNIP------------------------VRNEQGRRIRQAFI 682

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
              G KLV AD + IE R++A ++G+   + AFA G+DI+  T A+ F   ++ V+ + R
Sbjct: 683 PCAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMR 742

Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------- 475
              K +   L Y       AK      +     +  + +       + +           
Sbjct: 743 RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQADAQGY 802

Query: 476 -----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------ 518
                         +S +  ++      A+   + GTA +++K+A       +       
Sbjct: 803 VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDQS 862

Query: 519 -QLWKDLTEGFACVVQE 534
            ++   + +     ++E
Sbjct: 863 IRMLMQVHDELVFEIRE 879



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 29/182 (15%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISARR 542
           A   ++ G A E V    R   + +            L K L  G A   +       R 
Sbjct: 724 ATAAEVFGVALEAVTSDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERY 783

Query: 543 VANVPRLVMRRHKRDVHIVLPS--SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
              +  +   R + D    + +   RRL   D+K   +          R           
Sbjct: 784 PGVLEYMERTRQQADAQGYVETLFGRRLYLPDIKSRNA---GLRKAAERAAINAP----- 835

Query: 601 IVQAISRDILCEGMKN-------ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
            +Q  + DI+   M N              +++ VHDE+V E  +      +  +   M+
Sbjct: 836 -MQGTAADIIKRAMINVDGWIRGIEDQSIRMLMQVHDELVFEIREEKLEEYIAIIKEKMS 894

Query: 653 KN 654
             
Sbjct: 895 AA 896


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/587 (18%), Positives = 191/587 (32%), Gaps = 109/587 (18%)

Query: 7   DIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET         L  V       +A     A+ + D P +L    ++  + + L   L 
Sbjct: 363 DTETDSLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQL----DRDWVLAQLKPLLE 418

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           D     V  N  F+  +  +    DI  +     ++L     N +        LAL + E
Sbjct: 419 DPAQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLE 475

Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H     E   GK      F +  +D                  G Y   D + T  L   
Sbjct: 476 HKNISFEEVAGKGKKQLTFNQIDLDVA----------------GPYAAEDADITLRLHNL 519

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L               D E  L  +   I   G  ID  L+      IA    +L+    
Sbjct: 520 LNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDELETKAY 579

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++ +     S     L+  LF   G+ ++  +     S  +   + +LA D  L ++   
Sbjct: 580 EIAEQEFNLS-SPKQLQAILFEKMGLPILKKTPSGAPST-NEEVLQELALDYPLPKILLE 637

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+   GR+  +      + TGR S      QN+P        
Sbjct: 638 YRGLAKLKSTYTDKLPKMVNPSTGRVHTSY-HQAVTATGRLSSSDPNLQNIP-------- 688

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G K++  D + IE R++A ++G+   +
Sbjct: 689 ----------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALL 732

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHC 455
           +AF  G+DI+  T A+    PI+ V+ EQR   K +   L Y   A           +  
Sbjct: 733 EAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEA 792

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +       + +                         +S +   +      A+
Sbjct: 793 QDYMNVYFERYPGVLEYMESTRIHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAI 852

Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534
              + GTA +++K+A          +  G ++L   + +     VQE
Sbjct: 853 NAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQE 899


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 184/567 (32%), Gaps = 98/567 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + +   P +L     +  +   L   L DE V  V  N  ++  +     GI 
Sbjct: 378 AAYVPFGHDYLGAPEQL----SEEQVLGKLKPLLEDENVKKVGQNLKYDASVLANH-GIA 432

Query: 88  IPSKRWICTSVLART-NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +    +  T + +   N   +      LAL    H     E            I      
Sbjct: 433 LQGIAF-DTMLESYVVNSTANRHDMDTLALAHLGHTNISFE-----------EIAGKGAK 480

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195
               N +Q       Y   D + T  L + L P  +            E  L  +   + 
Sbjct: 481 QLTFNQIQL-DQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVE 539

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  ID  ++ +    +A + +++  +  +L       +     L + LF   GI ++ 
Sbjct: 540 RTGALIDATILGQQSAELAADLERIQREAWELAGEEFNLA-SPKQLGVILFEKLGIPVIK 598

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309
            ++ T     +   + +LA D  L  L      + KL     + L   ++   GR+  + 
Sbjct: 599 KTK-TGAPSTAEEVLQELALDYPLPALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSY 657

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P +  +                           VR   I
Sbjct: 658 N-QAVTATGRLSSTDPNLQNIPIKTEA------------------------GRRVRKAFI 692

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G ++V AD + IE R++A ++G++    AF  G D++  T A+ F T ++ V+ EQR
Sbjct: 693 APEGYRIVAADYSQIELRIMAHLSGDEGLTNAFNQGLDVHSATAAEVFGTSVESVTPEQR 752

Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLW 484
              K +   L Y       A+      +     +  +           ED       H +
Sbjct: 753 RSAKAINFGLIYGMSAFGLARQLHIGRNDAQRYIDTYFDRYPGVARYMEDIRVFAKEHGY 812

Query: 485 M--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKH---------- 514
           +                    +      A+   + G+A +++KKA               
Sbjct: 813 VETLMGRRLYLPEINASNGMRRQAAERTAINAPMQGSAADIIKKAMIDVDKWLSTLKVDA 872

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISAR 541
           + ++Q+  +L    A    E  + +  
Sbjct: 873 KMIMQVHDELVLEVAEDQIEPVTATLC 899


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/602 (17%), Positives = 198/602 (32%), Gaps = 109/602 (18%)

Query: 4   LFIDIETRSPQ--PLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           +  D ET S        VGV    E+        A+ + D P +L     +  +   L  
Sbjct: 353 IAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPTQL----SREFVLDALKP 408

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALN 117
            L    ++ V  +  +++ +       DI        ++L     N          LAL 
Sbjct: 409 ILESSNIIKVGQHIKYDKNVLANY---DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465

Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +  H T   +   GK      F + ++                +  G Y   D + T  L
Sbjct: 466 YLGHKTIHFEDIAGKGAKQLTFNQIAL----------------EEAGPYAAEDADITLRL 509

Query: 174 FKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              +             L D E  L  +   +   G  ID   + +  + +A    +L++
Sbjct: 510 HNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLSQQSQDLAARIAELEK 569

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +       +   T  L+  LF    + ++  +     S  S   + +LA +  L + 
Sbjct: 570 EVHEEAGEPF-NLGSTKQLQHILFEKMSLPIIKKTPKGAPST-SEDVLQELALEYPLPKK 627

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L + ++   GR+  +      + TGR S      QN+P +   
Sbjct: 628 IMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSY-HQAITATGRLSSTDPNLQNIPIR--- 683

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +   G K V AD + IE R++A ++G+ 
Sbjct: 684 ---------------------NEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSGDK 722

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AFA+G+DI+  T ++ F  P+D+V+ EQR   K +   L Y       AK      
Sbjct: 723 GLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPR 782

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           +     +  + +       + D                         ++ +   +     
Sbjct: 783 NEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAER 842

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEGGSISARRVA 544
            A+   + GTA +++K A       +       + +   + +     ++E    S  +  
Sbjct: 843 AAINAPMQGTAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVKTI 902

Query: 545 NV 546
           N 
Sbjct: 903 NT 904



 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 17/95 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RRL   D+K              R            +Q  + DI+   M          
Sbjct: 821 GRRLYLPDIKASN---GARRKGAERAAINAP------MQGTAADIIKMAMIKVDDWISKN 871

Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
             +   +++ VHDE+V E  +    S V T+ +LM
Sbjct: 872 AADDVTMMMQVHDELVFEIKEDKVDSYVKTINTLM 906


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/502 (19%), Positives = 168/502 (33%), Gaps = 91/502 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L D +V+ +A N  ++ ++  +  GIDI               G   +  +   
Sbjct: 468 DVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITPFDDTMLLSYTVDAGKGGNGMDELS 526

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                      +E    GK++I  F K +ID                    Y   D + T
Sbjct: 527 ERWLDHKPIPFKEICGSGKSMIT-FDKVAIDKA----------------TAYAAEDADVT 569

Query: 171 RELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L+  L P              ER +  +   +  RG  +D  ++ +L    AQ     
Sbjct: 570 LRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGEFAQGMAGK 629

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279
           + +I +L      +      L   LF   G+     ++ T     S   +  LA +   L
Sbjct: 630 ESEIYELAGENF-NIGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSAQVLEDLAAEGHEL 687

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                S   + KL     + L   ++   GR+  +     A+ TGR S      QN+P +
Sbjct: 688 PSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYAL-AATTTGRLSSSEPNLQNIPVR 746

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G KL+ AD + IE RVLA +A
Sbjct: 747 T------------------------EEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMA 782

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 KAF +G DI+  T ++ F TPI+ +    R   K +   + Y     G A    
Sbjct: 783 DIPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLG 842

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                 G  ++ + +       + +                     + +  + +  M+  
Sbjct: 843 ISRGEAGDYIKTYFERFPGIKDYMEAIKKQVHANGYVTTIFGRKAHYPEVNTKNPNMRAF 902

Query: 489 YPEFAVKDKLIGTACELVKKAW 510
           Y   A+   + G+A +++++A 
Sbjct: 903 YERAAINAPIQGSAADILRRAM 924


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/602 (17%), Positives = 202/602 (33%), Gaps = 111/602 (18%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             + ID ET S       L  +     A +A     A+ + D P +  D          L
Sbjct: 342 KLIAIDTETTSLNYMDAKLVGISFAIEAGEAAYLPLAHDYLDAPSQ-IDMA---TALEKL 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLAL 116
              L  +    V  N  ++  +F   +GI +    +  T + +   N + S      LAL
Sbjct: 398 RPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVHF-DTMLESYVFNSVASRHDMDGLAL 455

Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H     +   GK      F +  +D+                   Y   D + T  
Sbjct: 456 KYLGHKNISFEDVAGKGAKQLTFNQIDLDTAA----------------PYAAEDADITLR 499

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L P            ++ E  L  +   I  +G  ID  L+ +  + +AQ+  KL+
Sbjct: 500 LHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQKIDKLE 559

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            +  ++      +      L++  F      ++  +     S      + +LA D  L +
Sbjct: 560 LEAYEIAGEKF-NLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEE-VLVELALDYPLPK 617

Query: 282 LASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +  +  ++ KL     + L   V+ + GR+  +     A+ TGR S      QN+P +  
Sbjct: 618 IILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRT- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G+K++ AD + IE R++A ++ +
Sbjct: 676 -----------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQD 712

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              + AFA G+DI+  T A+ F    ++V+ EQR   K +   L Y       AK     
Sbjct: 713 KGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIP 772

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYP 490
            +     +  +         + +  +A +                      +   +    
Sbjct: 773 RNEAQTYIDTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAE 832

Query: 491 EFAVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSIS 539
             A+   + GTA +++KKA              +   ++Q+  +L         E     
Sbjct: 833 RAAINAPMQGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAK 892

Query: 540 AR 541
             
Sbjct: 893 IC 894



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M N        T+    +++ VHDE+V E  +    ++   +C LM + 
Sbjct: 841 QGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAKICLLMAQA 900


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/599 (17%), Positives = 197/599 (32%), Gaps = 121/599 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
           +  D ET S            A+QA +   ++A  +                  +  D  
Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
              L   L D   + V  ++ ++  +                T + +      +      
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   +   GK      F + +I                +  G Y   D +
Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487

Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L             L+D E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276
             L+     L      +      L   L+   G+ ++  +  T +   + + + +LA+ D
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L ++     ++ KL +     L E ++   GR+  +      + TGR S      QN+
Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G KL+ AD + IE R++A
Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            +A +D  + AF +G D++  T A+ F  P++ VS +QR   K +   L Y       AK
Sbjct: 701 HLAKDDGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
                       + ++         + +  +A++                      +  M
Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534
           +      A+   + GTA +++K+A  A            + +LQ+  +L       + E
Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVE 879


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/609 (17%), Positives = 190/609 (31%), Gaps = 111/609 (18%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLWDRTEQSAMPSDL- 57
           L  D ET S       L  V +     +A     A+    D          +  +P  + 
Sbjct: 413 LAFDTETNSLDPMQADLVGVSLALSPNEACYIPLAHTGAGDG------LFSEGQLPGQIP 466

Query: 58  ----LQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
               +  L+    D+  + V HN  +++++  +  GID+           A   G     
Sbjct: 467 VRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAPFDCTMCMSYALDAGKNGHG 525

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +    L+         E         KG +         A H         Y   D + 
Sbjct: 526 MDELSVLHLGHQPIAFSEVTGK----GKGKVTFDKVALEPATH---------YAAEDADV 572

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L++ L P              ER L  +   +  RG  ID  ++ +L    AQ   +
Sbjct: 573 TLRLWQVLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSSEFAQGAAR 632

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---- 275
           ++++I +L    + +      +   LF   G+     +  T       + + +LA+    
Sbjct: 633 IEDEIAELAGERL-NVGSPKQMGDILFGKMGLPGGTKT-ATGMWSTKATALEELAEAGHK 690

Query: 276 --DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
               IL     S       + L   V+   R   T     A+ TGR S      QN+P +
Sbjct: 691 LPQKILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAATTTGRLSSSDPNLQNIPIR 750

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G  LV AD + IE R+LA IA
Sbjct: 751 T------------------------EEGRRIRRAFVAEEGNLLVSADYSQIELRLLAEIA 786

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                  AF  G DI+  T ++ FN P+  +  E R   K +   + Y     G A    
Sbjct: 787 EIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLG 846

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                 G  ++++ +       + +                     + +  + +  ++  
Sbjct: 847 IPREEAGQYIKRYFERFPGIRDYMEETKTFCREHGYVETLFGRRCHYPEIAAKNPSIRAF 906

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSI 538
               A+  +L GTA +++++A                 +LQ+  +L         +    
Sbjct: 907 NERAAINARLQGTAADIIRRAMIRMEPALEKAKLSARMLLQVHDELVFEVPEGEADATIP 966

Query: 539 SARRVANVP 547
             R+     
Sbjct: 967 VVRQCMETA 975


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 109/601 (18%), Positives = 199/601 (33%), Gaps = 96/601 (15%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--- 56
           L +D ET S       L  V +     +A      +    + +          MP D   
Sbjct: 360 LAVDTETTSLDEMQAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTALAPGQMPMDEAL 419

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L DE+++ +  N  ++  +F +  GI +           A  +GL     +A  
Sbjct: 420 AILKPVLEDESLLKIGQNMKYDWKIFARH-GIRVAPFDDTMLMSYAMFSGLHGHGMDALS 478

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSP-PYDCTRANHV-QAWQLFGEYCKRDVE 168
                     ++E    GKA I  F K  +D    Y    A    + W  F     R   
Sbjct: 479 EEYLRHRPIPIKELIGTGKAQIT-FDKVPLDKATAYAAEDAEITYRLWAAFKPQLHRAQV 537

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            T  +++ L      ER L  +   +   G ++D  ++ ++  + AQ    L+E+I  L 
Sbjct: 538 TT--VYETL------ERPLVPVLAEMEMAGVKVDPTVLARMSNVFAQRMAGLEEEIQALA 589

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-----------LKSILSHSNITQLAKDL 277
                +      L   LF   G+   +  +             + ++  H     LA  +
Sbjct: 590 GQSF-NVGSPKQLGEILFDKLGVPGGEKGKTGAYATGADVLEDITTMEDHKQAADLAAKV 648

Query: 278 ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +  R  +   +    + L   V+ D GR+  +    GA+ TGR +      QN+P +   
Sbjct: 649 LDWRQIAKLKST-YTDALQTHVNPDTGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS-- 704

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A+ G ++V  D + IE R+LA +A   
Sbjct: 705 ----------------------DEGRRIREAFVATPGHRIVSLDYSQIELRILAHVANLP 742

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
               AFA G DI+  T ++ F  P++ +    R   K +   + Y     G A+  +   
Sbjct: 743 EMKAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINFGVIYGISGFGLARNLRIPR 802

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEF 492
           S     + ++ +       + D   A +                                
Sbjct: 803 SEAQGFIDRYFERFPGIRAYMDETVAFAKANGFVQTLFGRKIHTPEINAKGPGAGFAKRA 862

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVA 544
           A+   + G A +++++A       +        LQ+  +L    A    +    +AR V 
Sbjct: 863 AINAPIQGAAADIIRRAMIRMPAAIAHLPAKMLLQVHDELIFEVAESAVDPLIATARAVM 922

Query: 545 N 545
            
Sbjct: 923 E 923


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/589 (17%), Positives = 193/589 (32%), Gaps = 96/589 (16%)

Query: 6   IDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQY 60
           +D ET S  P+    VG+    E         A     V   +      + A+ + +  +
Sbjct: 373 LDTETTSIDPMQAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQLAREAVLARMKPW 432

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D +   V  +  ++  +F    GI +       T + +       +     LA     
Sbjct: 433 LEDASRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 490

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D    +         EY   D + T  L + + P 
Sbjct: 491 LKTITYE------EVCGKGASQIGFDEVPLD------RATEYAAEDADITLRLHRAMYPK 538

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         E    ++ Q +   G  ID + + +    + Q   +L++    L  
Sbjct: 539 VAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALAG 598

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F    + ++  +     S      + +LA+D  L +L      +
Sbjct: 599 QPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDFRGL 656

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  T     A  TGR +      QN+P +          
Sbjct: 657 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 706

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G  +V AD + IE R++A ++ ++  ++AF 
Sbjct: 707 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFR 751

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+D++  T A+ F     +V+ EQR   KV+   L Y       A           L +
Sbjct: 752 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 811

Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498
            ++       + + D  +  +H            LW+          +      A+   +
Sbjct: 812 DRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 871

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            GTA +L+K +  A     +Q W D   G     + G  +  R+V  V 
Sbjct: 872 QGTAADLIKLSMLA-----VQDWLD---GSPSTGKPGAPMRTRQVMQVH 912



 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RRL   D+ G       A     R            +Q  + D++   M          
Sbjct: 843 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQDWLDGS 893

Query: 619 ----KNGYDI----VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666
               K G  +    V+ VHDE+V E P      V   L  LM      A  +PL AE
Sbjct: 894 PSTGKPGAPMRTRQVMQVHDELVLEVPQEELSLVRERLPELMCGVA--ALRVPLVAE 948


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/582 (17%), Positives = 191/582 (32%), Gaps = 116/582 (19%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           D ET S       +  VG+    E+        A+++   P +L    ++ A+ + L   
Sbjct: 336 DTETTSLNYMEADI--VGLSFAVERGEAAYVPLAHSYPGAPAQL----DRDAILAALKPL 389

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS-SLKNACLALNF 118
           L D     +  N  ++  +  +    DI  +     T + +              LAL +
Sbjct: 390 LEDPAKPKLGQNLKYDASVLARY---DIHMQGIAFDTMLESYVLDSTGTRHDMDSLALKY 446

Query: 119 ---SEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              S    +   GK      F +  I                +  G Y   D E T  L 
Sbjct: 447 LGRSTTHFEDVAGKGAKQITFDQVGI----------------EQAGPYAAEDAEVTLALH 490

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            SD E  L  +   +   G  +D + + +    +    + L+E+
Sbjct: 491 ETLWPKLQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQALEEE 550

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L   +  +      L   LF    + ++  +     S      + +LA D  L +L 
Sbjct: 551 AHNLAGQVF-NLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEE-VLQELALDYPLPKLL 608

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   ++   GR+  +      + TGR S      QN+P +    
Sbjct: 609 IEHRGLSKLKSTYTDKLPGMINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT--- 664

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA+ G ++V AD + IE R++A ++ +  
Sbjct: 665 ---------------------EEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAG 703

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            ++AF    D++  T A+ F   +D VS EQR   K +   L Y       A+  +    
Sbjct: 704 LLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIYGMSAFGLARQLRLDRG 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEF 492
                +  + +       + D  +A +H                         Q      
Sbjct: 764 EAQRYIDVYFERYPGVREYMDNTRALAHEQGYVETLFGRRLYLPEINVRNKNRQQAAERT 823

Query: 493 AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           A+   + GTA +++K+A               + ++Q+  +L
Sbjct: 824 AINAPMQGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDEL 865



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+   M    +          +++ VHDE+V E  +     V   LC  M+  
Sbjct: 830 QGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDELVLEVAEDQLDPVCDELCKQMSAA 888


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/587 (18%), Positives = 191/587 (32%), Gaps = 109/587 (18%)

Query: 7   DIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET         L  V       +A     A+ + D P +L    ++  + + L   L 
Sbjct: 348 DTETDGLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQL----DRDWVLAQLKPLLE 403

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           D     V  N  F+  +  +    DI  +     ++L     N +        LAL + E
Sbjct: 404 DPAQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLE 460

Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H     E   GK      F +  +D                  G Y   D + T  L   
Sbjct: 461 HKNISFEEVAGKGKKQLTFNQIDLDVA----------------GPYAAEDADITLRLHNL 504

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L               D E  L  +   I   G  ID  L+      IA    +L+    
Sbjct: 505 LNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDELETKAY 564

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++ +     S     L+  LF   G+ ++  +     S  +   + +LA D  L ++   
Sbjct: 565 EIAEQEFNLS-SPKQLQAILFEKMGLPILKKTPSGAPST-NEEVLQELALDYPLPKILLE 622

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+   GR+  +      + TGR S      QN+P        
Sbjct: 623 YRGLAKLKSTYTDKLPKMVNPSTGRVHTSY-HQAVTATGRLSSSDPNLQNIP-------- 673

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G K++  D + IE R++A ++G+   +
Sbjct: 674 ----------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALL 717

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHC 455
           +AF  G+DI+  T A+    PI+ V+ EQR   K +   L Y   A           +  
Sbjct: 718 EAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLGMGRNEA 777

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +       + +                         +S +   +      A+
Sbjct: 778 QDYMNVYFERYPGVLEYMESTRVHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAI 837

Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534
              + GTA +++K+A          +  G ++L   + +     VQE
Sbjct: 838 NAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQE 884


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/589 (19%), Positives = 195/589 (33%), Gaps = 96/589 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60
           ID ET S  P+    VG+    +         A     V   D   Q    A+ + +  +
Sbjct: 358 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSREAVLARMRLW 417

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L DET   V  +  ++  +F    GI +       T + +       +     LA     
Sbjct: 418 LEDETRGKVGQHLKYDAHVFANH-GIALRGI-THDTMLQSYVLASHRNHGMDALAERVLH 475

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D        A     EY   D + T  L + L P 
Sbjct: 476 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 523

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         E    ++ Q +   G  +D + + +    + Q    L+++   L  
Sbjct: 524 VAEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLALEQEAYALAG 583

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F    + +V  +     S      + +LA+D  L +L      +
Sbjct: 584 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 641

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  T     A  TGR +      QN+P +          
Sbjct: 642 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 691

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G  +V AD + IE R++A ++G+D  ++AF 
Sbjct: 692 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 736

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+D++  T A+ F     +V+ EQR   KV+   L Y       A           L +
Sbjct: 737 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 796

Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498
            ++       + + D  +  +H            LW+          +      A+   +
Sbjct: 797 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 856

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            GTA +L+K +  A     +Q W +   G     + G  + +R V  V 
Sbjct: 857 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 897


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 222 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 279

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 280 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 327

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 328 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAY 387

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 388 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 445

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 446 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 498

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 499 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 540

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y                 A
Sbjct: 541 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 600

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494
           + +  +       +QQF  ++++ +  + +               S +   +      A+
Sbjct: 601 QKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 660

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 661 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 712


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 100/537 (18%), Positives = 190/537 (35%), Gaps = 96/537 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +   + + L   L D +++ V  N  ++  +    +GI 
Sbjct: 381 AAYLPLAHDYADAPEQL----DSEQVLAKLKPLLEDPSLLKVGQNLKYDMSILAN-VGIA 435

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +   N + S      LAL +  H     E   GK +    F +  +++
Sbjct: 436 LKGVAF-DTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIPLET 494

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                              Y   D + T  L + L P            +D E  L  + 
Sbjct: 495 AA----------------PYAAEDADITLRLHQHLWPRLQKASELASVFTDIELPLVSIL 538

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  ID  L+ +  + +A++  +L++   ++      +   T  L+   F   G 
Sbjct: 539 SQIERQGVLIDSMLLGQQSDELARKIDELEQKAYEIAGEPF-NLGSTKQLQALFFEKLGY 597

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRL 305
            ++  +     S      + +LA D  L ++     ++ KL     + L   V    GR+
Sbjct: 598 PVLKKTPKGAPSTAEE-VLVELALDYPLPKIILEHRSLSKLKSTYTDKLPLMVDGKTGRV 656

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +     A+ TGR S      QN+P +                              +R
Sbjct: 657 HTSYHQAIAA-TGRLSSSEPNLQNIPIRT------------------------EEGRRIR 691

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G+K++ AD + IE R++A ++ +   + AFA G+DI+  T A+ F+    +V+
Sbjct: 692 HAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSEVT 751

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAES 480
            EQR   K +   L Y       A+            +  + +         ED   A +
Sbjct: 752 SEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAA 811

Query: 481 HHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              ++                    +      A+   + GTA +++KKA     Q +
Sbjct: 812 EQGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIAQWI 868



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M N        T+    +++ VHDE+V E       S+   +C LM + 
Sbjct: 850 QGTAADIIKKAMINIAQWIETETQGEITMIMQVHDELVFEVDADKADSLKLKVCELMAQA 909


>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
 gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
          Length = 931

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/582 (17%), Positives = 196/582 (33%), Gaps = 103/582 (17%)

Query: 7   DIET----RSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           D ET         L  +  +A AE +A     A+ + D P +L    ++  + +++  +L
Sbjct: 357 DTETDSLDYMEANLVGI-SFAVAEGEAAYLPLAHDYLDAPKQL----DRDWVLAEMKLWL 411

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFS 119
            D   + V  N  ++  +  +    DI  +     ++L     N +        LAL + 
Sbjct: 412 EDAGALKVGQNLKYDASVLARY---DIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYL 468

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +H     E            I          N ++       Y   D + T  L   L+ 
Sbjct: 469 QHQCISFE-----------EIAGKGKKQLTFNQIEL-DQAAPYAAEDADVTLRLHNALMA 516

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                          E  L  +   +   G  I  +++ K  + IA     L++++ +L 
Sbjct: 517 QLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISAEMLAKQSQEIAVRLDTLEKEVFELA 576

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S     L+  LF   G+ +V  +     S  +   + +LA D  L +       
Sbjct: 577 GEEFNLS-SPKQLQAILFEKMGLPVVKKTPSGTPST-NEEVLQELALDYPLPKRILEYRG 634

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L + V    GR+  +      + TGR S      QN+P +         
Sbjct: 635 LAKLKSTYTDKLPKMVKPATGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR--------- 684

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  GK ++  D + IE R++A ++G++  I AF
Sbjct: 685 ---------------NEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLSGDEALIDAF 729

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+DI+  T A+     I  V+ E R   K +   L Y       AK            
Sbjct: 730 RHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMSAFGLAKQLGIPRGEAQQY 789

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           + ++ +       + +                       + +S +   +      A+   
Sbjct: 790 MDRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHLPEIKSSNAMRRKGAERAAINAP 849

Query: 498 LIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVV 532
           + GTA +++K+A        + + +G + L   + +     V
Sbjct: 850 MQGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEV 891


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/541 (18%), Positives = 184/541 (34%), Gaps = 97/541 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D++++ +  N  ++  +FK+ +GI +           A   GL     +     
Sbjct: 406 LKPMLEDDSILKIGQNMKYDAKIFKR-VGITVDPIDDTMLMSYAMNAGLNRHSMDVLSEQ 464

Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +  GK+ I  F +  +                +   +Y   D + T  
Sbjct: 465 YLGHTPIPIKPLLGAGKSAIT-FDRVPV----------------EEAVKYAAEDADITLR 507

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              ER L  +   +   G ++D D + ++    AQ+   L++
Sbjct: 508 LWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTLSRMSNAFAQKMAGLED 567

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +L  G   +      +   LF   G++       T K       +  LA +     L
Sbjct: 568 ELYELAGGKF-NVGSPAQVGEILFDQMGLEGGKKG-KTGKYATGADILEDLATEHGFPGL 625

Query: 283 ASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L   ++   GR+  +    GA+ TGR S      QN+P +   
Sbjct: 626 VLDWRQLSKLKSTYTDALQTHINSETGRVHTSYSITGAN-TGRLSSTDPNLQNIPIRT-- 682

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  GK LV  D + IE R+LA +A  D
Sbjct: 683 ----------------------DEGRKIREAFIADEGKVLVALDYSQIELRILAHVANID 720

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              +AF +G DI+  T ++ FN P+D+++ + R   K +   + Y     G A+  +   
Sbjct: 721 ALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPR 780

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEF 492
           +     + ++ +      T+ D   A +      +                         
Sbjct: 781 AEAQGFIDRYFERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINAKGPGAGFAKRA 840

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVA 544
           A+   + GTA +++++A       +        LQ+  +L              +AR V 
Sbjct: 841 AINAPIQGTAADVIRRAMIRMDAAIAHLPAKMLLQVHDELVFEVDKDAAHDLIAAAREVM 900

Query: 545 N 545
            
Sbjct: 901 E 901



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
           +Q  + D++   M             ++L VHDE+V E        +
Sbjct: 846 IQGTAADVIRRAMIRMDAAIAHLPAKMLLQVHDELVFEVDKDAAHDL 892


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/589 (19%), Positives = 195/589 (33%), Gaps = 96/589 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60
           ID ET S  P+    VG+    +         A     V   D   Q    A+ + +  +
Sbjct: 360 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSREAVLARMRLW 419

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L DET   V  +  ++  +F    GI +       T + +       +     LA     
Sbjct: 420 LEDETRGKVGQHLKYDAHVFANH-GIALRGI-THDTMLQSYVLASHRNHGMDALAERVLH 477

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D        A     EY   D + T  L + L P 
Sbjct: 478 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 525

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         E    ++ Q +   G  +D + + +    + Q    L+++   L  
Sbjct: 526 VAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALAG 585

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F    + +V  +     S      + +LA+D  L +L      +
Sbjct: 586 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 643

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  T     A  TGR +      QN+P +          
Sbjct: 644 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 693

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G  +V AD + IE R++A ++G+D  ++AF 
Sbjct: 694 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 738

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+D++  T A+ F     +V+ EQR   KV+   L Y       A           L +
Sbjct: 739 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 798

Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498
            ++       + + D  +  +H            LW+          +      A+   +
Sbjct: 799 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 858

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            GTA +L+K +  A     +Q W +   G     + G  + +R V  V 
Sbjct: 859 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 899


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 112/589 (19%), Positives = 195/589 (33%), Gaps = 96/589 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60
           ID ET S  P+    VG+    +         A     V   D   Q    A+ + +  +
Sbjct: 358 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSREAVLARMRLW 417

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L DET   V  +  ++  +F    GI +       T + +       +     LA     
Sbjct: 418 LEDETRGKVGQHLKYDAHVFANH-GIALRGI-THDTMLQSYVLASHRNHGMDALAERVLH 475

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D        A     EY   D + T  L + L P 
Sbjct: 476 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 523

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         E    ++ Q +   G  +D + + +    + Q    L+++   L  
Sbjct: 524 VAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALAG 583

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F    + +V  +     S      + +LA+D  L +L      +
Sbjct: 584 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 641

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  T     A  TGR +      QN+P +          
Sbjct: 642 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 691

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G  +V AD + IE R++A ++G+D  ++AF 
Sbjct: 692 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 736

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+D++  T A+ F     +V+ EQR   KV+   L Y       A           L +
Sbjct: 737 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 796

Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498
            ++       + + D  +  +H            LW+          +      A+   +
Sbjct: 797 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 856

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            GTA +L+K +  A     +Q W +   G     + G  + +R V  V 
Sbjct: 857 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 897


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 103/588 (17%), Positives = 198/588 (33%), Gaps = 97/588 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    +++ + + L   L DE  + V  N  F+  L  +    D
Sbjct: 385 AAYLPVAHDYLDAPTQL----DRAHVLATLKPLLEDEKALKVGQNLKFDMSLLARY---D 437

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I  +     ++L       +        L+  +  H T   E            I     
Sbjct: 438 ITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFE-----------EIAGKGK 486

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTI 194
                N +   +    Y   D + T +L   + P            +  E  L  +   I
Sbjct: 487 KQLTFNQIAL-EQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNQIEMPLLPVLSHI 545

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  ID  ++      + +   +L+    +L +     +  T  L+  L+    + ++
Sbjct: 546 ERTGVLIDQSILATHSIELTKRLAELEIQAHELAEEPFNLA-STKQLQAILYEKQKLPIL 604

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308
             + G   S  +   + +LA D  L ++      + KL     + L   ++   GR+  +
Sbjct: 605 KKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTS 663

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 + TGR S      QN+P                                +R   
Sbjct: 664 Y-HQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIRQAF 698

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G ++V AD + IE R++A ++ ++  +KAFA GEDI+  T A+ F  P+DKV+ EQ
Sbjct: 699 IAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQ 758

Query: 429 RAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--- 481
           R   K +   L Y       A+            +  + +       + +  + ++    
Sbjct: 759 RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAASQG 818

Query: 482 ------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                             +   +      A+   + GTA +++K+A        +  W  
Sbjct: 819 YVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIE-----VDAWLQ 873

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             E    +V+    +    V  V   V+    + +  ++ +S  L   
Sbjct: 874 AQE--KPLVRMIMQVHDELVFEVHESVLEESNQRIRELMENSMALAVP 919


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 104/592 (17%), Positives = 204/592 (34%), Gaps = 105/592 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VG+    E         A+ ++  P +L    ++  +   L  +L 
Sbjct: 344 DTETTSLNYMAAELVGLSFSVEAGEAAYVPVAHDYEGAPEQL----DRDWVLEQLKPWLE 399

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           D++   V  +  ++  +      I +    +  T + +   N + S      LA  F  H
Sbjct: 400 DDSKAKVGQHLKYDANVLNNY-QITLRGIAY-DTMLESYVYNSVSSRHDMNTLASKFLGH 457

Query: 122 LT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                +   GK    + F +  ++   +                Y   D + T  L + +
Sbjct: 458 TCVSFEDIAGKGAKQKTFNQIDLEVAAF----------------YAAEDADITLRLHQAI 501

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P             D E  L  +   +   G  ID +L+      IA + ++L+    +
Sbjct: 502 WPKIETTPELVSIFKDIECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQELEIKAHE 561

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                   S     L++ LF   G+ ++  +     S  +   + +LA+D  L RL    
Sbjct: 562 EAGESFNLS-SPKQLQVILFEKQGLPVIKKTPKGQPST-AEPILQELAQDYELPRLIMEH 619

Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            ++ KL     + L E +   GR+  +      + TGR S      QN+P +        
Sbjct: 620 RSLSKLKSTYTDKLPEMIQKTGRIHTSY-HQAITATGRLSSTDPNLQNIPIRS------- 671

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G KLV AD + +E R++A ++ +   + A
Sbjct: 672 -----------------AEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGLLDA 714

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F    D++  T A+ F   +D+V+ EQR   K +   L Y       AK         G 
Sbjct: 715 FTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAGK 774

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            ++++ +       + +                         ++ +  M+      A+  
Sbjct: 775 YIKRYFERYPGVQQYMENTREGAKEKGYVETIYGRRLYLPDIKAKNAMMRQAAERTAINA 834

Query: 497 KLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            + G+A +++K+A      W       +++   + +     V E    +A++
Sbjct: 835 PMQGSAADIIKRAMIKMHDWLQGTDLDVKMIMQVHDELIFEVAEKDLEAAQK 886



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618
            RRL   D+K   + +  A     R            +Q  + DI+   M         T
Sbjct: 808 GRRLYLPDIKAKNAMMRQAA---ERTAINAP------MQGSAADIIKRAMIKMHDWLQGT 858

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
                +++ VHDE++ E  +    +    +  +M
Sbjct: 859 DLDVKMIMQVHDELIFEVAEKDLEAAQKKIVDIM 892


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 103/591 (17%), Positives = 199/591 (33%), Gaps = 104/591 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ +   P +L    +       L  YL D     V  N  ++  +  +  GI 
Sbjct: 378 ACYIPFAHDYMGAPEQL----QPEFALEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GIS 432

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTK---MEEGKALIAR-FCKGSIDS 142
           +    +  T + +     + S      LALN+    T       GK      F + ++D 
Sbjct: 433 LRGITF-DTMLESYVLDSVASRHDMDSLALNYLGEETIKFADVAGKGAAQLTFNQVALD- 490

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                            G Y   D + T  L + L P             + E  L  + 
Sbjct: 491 ---------------QAGPYAAEDADITLRLHQTLWPRVAAEPTLTKVFEEIELPLVPVL 535

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  +D  L+ +  + ++    +L+ +  +L       +     L   LF    I
Sbjct: 536 SRIERTGALVDDTLLFQQSQELSARLGELETEAWELAGQQFNLA-SPKQLGEILFEKLQI 594

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S      + +LA D  L ++      + KL     + L   ++S  GR+
Sbjct: 595 PVLKKTAKGAPST-KEEVLQELALDYPLPKVLLEHRGLAKLKSTYTDKLPTMINSVTGRI 653

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +    G + TGR S      QN+P +                              VR
Sbjct: 654 HTSYHQSG-TATGRLSSSDPNLQNIPIRS------------------------AEGRRVR 688

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A+ G KLV AD + IE R++A ++ +   + AF+ G+DI+  T A+ F    ++V+
Sbjct: 689 QAFVAAPGCKLVAADYSQIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVFGVENEEVT 748

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
            +QR   K +   L Y       A+            ++ +         + +       
Sbjct: 749 IDQRRSAKAINFGLIYGMSAFGLARQLGINRKQAAEYIELYFTRYPGVQNYMNNIRHSAA 808

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                           +  + +   +      A+   + GTA +++K A    H      
Sbjct: 809 EQGFVETVFGRRLYLPEINASNGMRRQAAERTAINAPMQGTAADIIKLAMINVHN----- 863

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           W + ++  + ++     +    V  VP   M   ++ ++ ++ S+  L+  
Sbjct: 864 WLETSDLTSKII---MQVHDELVLEVPESEMEEVQKGLNDLMESAAELLVP 911



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 18/122 (14%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGK 596
                V N    +         +     RRL       + +  N    Q   R       
Sbjct: 791 TRYPGVQNYMNNIRHSAAEQGFVETVFGRRLYLP----EINASNGMRRQAAERTAINAP- 845

Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
                +Q  + DI+   M N             I++ VHDE+V E P++    V   L  
Sbjct: 846 -----MQGTAADIIKLAMINVHNWLETSDLTSKIIMQVHDELVLEVPESEMEEVQKGLND 900

Query: 650 LM 651
           LM
Sbjct: 901 LM 902


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 108/599 (18%), Positives = 195/599 (32%), Gaps = 109/599 (18%)

Query: 5   FIDIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S  P+    VG+    E  +A     A+ +   P +L D T   A    L   
Sbjct: 336 ALDTETTSLDPMQAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQL-DFT---AALRQLRPM 391

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L D ++  +  N  +++ +     GI +       T + +       +     LA+    
Sbjct: 392 LEDASIPKLGQNLKYDKHVLANH-GIALNGI-THDTLLQSYVLESHRTHGMDDLAMRHLG 449

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                 E+  GK      F + SI++                           T +L + 
Sbjct: 450 VQTVTYEQIAGKGAKQVPFSQISIETAAEYAAEDAD----------------ITLQLHQA 493

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P             + E  L  +  TI   G  ID  ++      I Q+   L++   
Sbjct: 494 LYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLIDLEQQAY 553

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            +      +      L+  LF   GI  +  +     S      + +LA D  L ++   
Sbjct: 554 DIAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGAPST-DEDVLQELALDYPLPKVLLE 611

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   ++   GR+  +      + TGR +      QN+P +      
Sbjct: 612 YRGLAKLKSTYTDKLPRMINPATGRVHTSYS-QAVAITGRLASSDPNLQNIPVRT----- 665

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  ++ AD + IE R++A ++ ++  +
Sbjct: 666 -------------------AEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQDEGLL 706

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AFA GEDI+  T A+ F  P D+VS EQR   KV+   L Y       A+         
Sbjct: 707 SAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAA 766

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494
              + ++         +    +  +      + +                        A+
Sbjct: 767 QNYIDRYFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWVPEINSPNGMRRAGAERAAI 826

Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543
              + GTA +L+K A  A            + ++Q+  +L         E    +  ++
Sbjct: 827 NAPMQGTAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDAELELVQQTLPQL 885



 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + D++   M               I++ VHDE+V E PD     V   L  LM
Sbjct: 831 QGTAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDAELELVQQTLPQLM 886


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/565 (17%), Positives = 192/565 (33%), Gaps = 94/565 (16%)

Query: 7   DIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S + +    VGV    +          + +   P +L    ++  + + L   L 
Sbjct: 352 DTETTSLRYMAAEVVGVSFAVQPFEAAYVPFCHDYMGAPEQL----DRDTVLAQLKPLLE 407

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNG-LPSSLKNACLALNFSE 120
                 V  N  +++ +       DI  +     T V +     + S      LAL++  
Sbjct: 408 SPDHKKVGQNLKYDKNVLANH---DICLEGIAEDTMVQSYVLNSVSSRHNMDALALHYLG 464

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E            +          N ++     G Y   D + T  L + L P 
Sbjct: 465 EETTTFES-----------LAGKGAKQLTFNQLEL-DKAGPYAAEDADITLRLHQALRPQ 512

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       D +  L  +   +  RG  I    + +  + +A+   +L+    +   
Sbjct: 513 LAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELETAAYEAAG 572

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L++  +   G+ ++  +     S  +   + +LA    L RL     ++
Sbjct: 573 ETF-NLGSPKQLQVIFYEKLGLPVLKKTPKGAPST-AEPVLQELAHRHELPRLLLEHRSL 630

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     +TL E +    GR+  +      + TGR S      QN+P +          
Sbjct: 631 SKLKSTYTDTLPELIHHRTGRVHTSY-HQAVTATGRLSSSEPNLQNIPIRS--------- 680

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G KL+ AD + IE R++A ++ +   + AFA
Sbjct: 681 ---------------EQGRRIRQAFVAEKGYKLLAADYSQIELRIMAHLSEDKGLLTAFA 725

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            GEDI+  T A+ F   +++V+ +QR   K +   L Y       A+            +
Sbjct: 726 KGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYI 785

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
            ++ +      T+ D  + ++H                     +  +Q      A+   +
Sbjct: 786 DRYFERYPGVLTYMDNIRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPM 845

Query: 499 IGTACELVKKAWRAKHQGVLQLWKD 523
            GTA +++K A     + +L  + D
Sbjct: 846 QGTAADIIKLAMIEVERWLLAEYPD 870


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 198/563 (35%), Gaps = 103/563 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  +   L   L D     +  N  F+  +  +  GI+
Sbjct: 374 AAYVPVAHDYLDAPAQL----DRDWVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIE 428

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +   N +        LAL + EH     E   GK      F +  +  
Sbjct: 429 MQGIVF-DTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQIDL-- 485

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +  G Y   D + T  L   L P  +            E  L  + 
Sbjct: 486 --------------EQAGPYAAEDADITLRLHNTLYPKVEADDKLNHVFETIEMPLVPVL 531

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  +D  L+      IA    ++++   ++ +     S     L+  LF   G+
Sbjct: 532 SRMERTGVYVDSMLLGAQSTEIAARLDEIEKKAFEIAEQEFNLS-SPKQLQAILFEKMGL 590

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L +L      + KL     + L + V+   GR+
Sbjct: 591 PVLKKTPSGTPST-NEEVLQELALDYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRV 649

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 650 HTSY-HQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIR 684

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+  +  I++VS
Sbjct: 685 QAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIEEVS 744

Query: 426 KEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTST 471
            EQR   K +   L Y                 A+ +  +       + ++ ++ ++ ++
Sbjct: 745 SEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYMNVYFERYPGVLEYMESTRNAAS 804

Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
            + +              +S +   +      A+   + GTA +++K A  A        
Sbjct: 805 EQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAVDGWVQQQ 864

Query: 515 -QGVLQLWKDLTEGFACVVQEGG 536
            +G ++L   + +     V+E  
Sbjct: 865 PEGNVRLLMQVHDELVFEVKESA 887


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 106/560 (18%), Positives = 198/560 (35%), Gaps = 100/560 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + ID ET S       L  +     A +A     ++ + D P +L    +++ +   L  
Sbjct: 339 IAIDTETTSLNYMEAELVGISFAVEAGKAAYLPLSHDYVDAPEQL----DKALVFEKLTP 394

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L +E +  V  N  ++  +F    GI +   ++  T + +   N + S      LAL +
Sbjct: 395 LLENEAIKKVGQNLKYDISIFANA-GIKLKGVQF-DTMLESYVFNSVASKHNMDDLALKY 452

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 453 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 496

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            +D E  L  +  TI  +G  ID  L+ +  E +A++   L   
Sbjct: 497 QHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKIDDLQTK 556

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++       +     L+   F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 557 AHEIAGQPFNLA-SPKQLQELFFEKLGYPIIKKTPKGAPSTAEE-VLVELALDYPLPKII 614

Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V++  GR+  +     A+ TGR S      QN+P +    
Sbjct: 615 LEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 670

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 671 ---------------------EEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLSQDKG 709

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA G+DI+  T A+ F+    +V+ +QR   K +   L Y       AK      +
Sbjct: 710 LLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRA 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  + +       + +  +A +                      +   +      
Sbjct: 770 EAQRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRNAMRRQAAERA 829

Query: 493 AVKDKLIGTACELVKKAWRA 512
           A+   + GTA +++KKA   
Sbjct: 830 AINAPMQGTAADIIKKAMIN 849



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M N        T     +++ VHDE+V E       S+   +C LM   
Sbjct: 836 QGTAADIIKKAMINVAKWIETETNGEITMIMQVHDELVFEVDADKADSLQVKICELMAAA 895


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/566 (17%), Positives = 190/566 (33%), Gaps = 114/566 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56
           D ET S           Y + A I   ++A +                       ++   
Sbjct: 334 DTETTSL---------RYMD-AEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSVLEQ 383

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNG-LPSSLKNACL 114
           L   L D     V  N  +++ +       DI  +     T V +     + +      L
Sbjct: 384 LKPLLEDPKHKKVGQNLKYDKNVLANH---DIQLEGIAEDTMVESYVLNSVGTRHDMDSL 440

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  + +  T   E   GK      F +  ++S                 G Y   D + T
Sbjct: 441 ARTYLDEETITYESIAGKGAKQLTFNQIDLESA----------------GPYAAEDADIT 484

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P             + +  L  +   +  RG  I    + +  + +A+   +
Sbjct: 485 LRLHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAE 544

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+++  ++      +   T  L+  L+   G+ ++  +     S  +   + +LA +  L
Sbjct: 545 LEKEAHEVAGEAF-NLGSTKQLQAILYDKLGLRVIKKTPKGAPST-AEPVLQELAHEHEL 602

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            RL     ++ KL     +TL E +    GR+  +      + TGR S      QN+P +
Sbjct: 603 PRLIVEHRSLSKLKSTYTDTLPELIHHRTGRVHTSY-HQAVTATGRLSSSEPNLQNIPIR 661

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G KL+ AD + IE R++A ++
Sbjct: 662 T------------------------QEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHLS 697

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFK 449
           G+   + AF +GEDI+  T A+ F   +D+V+ +QR   K +   L Y   A    +  +
Sbjct: 698 GDRGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMSAFGLSRQLE 757

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    + ++ +       + D                       +  + +  +Q  
Sbjct: 758 VDRKTAQEYIDRYFERYPGVLKYMDNIRKQAHDDGYVETLYGRRLYLPEINARNKQLQQA 817

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKH 514
               A+   + GTA +++K+A     
Sbjct: 818 AERTAINAPMQGTAADIIKRAMIEVD 843



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+   M            +   + + VHDE++ E  +     V   L   M+  
Sbjct: 828 QGTAADIIKRAMIEVDNWLRSEHASDACMTMQVHDELIIEVREEAVDKVKDGLVKRMSAA 887


>gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 99/589 (16%), Positives = 195/589 (33%), Gaps = 97/589 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  +     A +AV    A+ +   P +L        +   L   L 
Sbjct: 337 DTETTSLDYMKAQLVGMSFAVKAGEAVYLPLAHDYPGAPEQL----SLEFVMQKLGPILA 392

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           DE    V  N  +++ +     G  +   ++  T + +   N + +      LAL +  H
Sbjct: 393 DENKAKVGQNLKYDKSVLANA-GFALNGIKF-DTMLESYVFNSVGTRHDMDSLALKYLGH 450

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
                E            I          N ++  +    Y   D + T  L + L P  
Sbjct: 451 KNISFE-----------DIAGKGKKQLTFNQIEL-EKAAPYAAEDADITLRLHEVLWPKI 498

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      D E  L  +   I   G  ID +++      + +   +L+++  ++   
Sbjct: 499 AADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLIELEKEAFEIAGE 558

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S     L++ LF   G+ ++  +     S      + +LA D  L ++      + 
Sbjct: 559 PFNLS-SPKQLQVLLFEKLGLPIIKKTPKGAPSTAEE-VLQELAHDYPLPKVIIEHRGLS 616

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L   V+   +   T      + TGR S      QN+P +            
Sbjct: 617 KLKSTYTDKLPLMVNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRS----------- 665

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA++G K+V AD + IE R++A ++ +   + AFANG
Sbjct: 666 -------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANG 712

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   +D V+ + R   K +   L Y       A+            + +
Sbjct: 713 LDVHSATAAEVFGVELDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDK 772

Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + +                       +  + +   +      A+   + G
Sbjct: 773 YFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQG 832

Query: 501 TACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQEGGSISARR 542
           TA +++KKA  + +          ++L   + +     ++   +    +
Sbjct: 833 TAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDELVFEIKTDCAPEYTK 881



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M +  +       N   +++ VHDE+V E            +C LM++ 
Sbjct: 831 QGTAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDELVFEIKTDCAPEYTKHICELMSQA 890

Query: 655 PSWAKGLPLKAEGYEAKRY 673
              A  +PL  E  E   +
Sbjct: 891 A--ALDVPLIVEADEGDNW 907


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 96/532 (18%), Positives = 181/532 (34%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +     +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 89  IKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 146

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 147 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 194

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 195 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 254

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF   G+ ++  +     S  +   + +L+    L ++   
Sbjct: 255 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 312

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 313 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 365

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 366 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 407

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +      +  
Sbjct: 408 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 467

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              +  + Q   S   F    +A++                      +   +      A+
Sbjct: 468 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 527

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 528 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 579


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 110/603 (18%), Positives = 195/603 (32%), Gaps = 121/603 (20%)

Query: 5   FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            ID ET S  PL           + GV AY         A+ + D PV+L     +  + 
Sbjct: 340 SIDTETTSLVPLQAQLVGISLCCEPGVAAY------IPVAHRYADAPVQL----SRELVL 389

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +  +L D     V  N  ++  +F    GI +       T + +       S     L
Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIA-HDTMLESYVFESHRSHDMDSL 447

Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           AL          +E  GK      F +  I                    EY   D + T
Sbjct: 448 ALRHLGRTTITFQEVCGKGASQICFDQVDI----------------ARATEYAAEDADIT 491

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + ++P               E    ++ Q I   G  ID  ++      + +   +
Sbjct: 492 LQLHQAMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLE 551

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           ++    +L      +      +    F    + +V  +     S      + +LA+D  L
Sbjct: 552 IETSAYELAGQPF-NLNSPKQIGEIFFEKLQLPVVKKTPSGAPST-DEEVLAKLAEDYPL 609

Query: 280 NRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++     ++ KL     + L + +    GR+         + TGR +      QN+P +
Sbjct: 610 PKVLLEYRSLSKLKSTYTDKLPKMIDPTTGRVHTNYA-QTVAVTGRLASNEPNLQNIPIR 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 669 T------------------------AEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLS 704

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
           G+   ++AFA+G DI+  T A+ F+T    V+ EQR   KV+   L Y       A    
Sbjct: 705 GDANMLRAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSAFGLAGNLG 764

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488
                    + ++         F D  + ++             LW+          +  
Sbjct: 765 IERGAAQSYIDKYFARFSGVKQFMDETRLKAKAHGYVETVFGRRLWLPEINSPNGPRRQG 824

Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538
               A+   + GTA +L+K +  A          K   V+Q+  +L         E   +
Sbjct: 825 AERAAINAPMQGTAADLIKLSMVAVQGWLETDGLKSLMVMQVHDELVLEVPQEELELVRV 884

Query: 539 SAR 541
              
Sbjct: 885 KLP 887



 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLMT 652
           Q  + D++   M         +G    +V+ VHDE+V E P      V   L +LM 
Sbjct: 835 QGTAADLIKLSMVAVQGWLETDGLKSLMVMQVHDELVLEVPQEELELVRVKLPALMA 891


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 103/564 (18%), Positives = 187/564 (33%), Gaps = 94/564 (16%)

Query: 4   LFIDIETRSPQ--PLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           +  D ET S        VGV    E+        A+ + D P +L     +  +   L  
Sbjct: 353 IAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPAQL----SREFVLDALKP 408

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALN 117
            L  +TV+ V  +  +++ +       DI        ++L     N          LAL 
Sbjct: 409 ILESDTVIKVGQHIKYDKNVLANY---DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +  H T   E            I          N +   +  G Y   D + T  L   +
Sbjct: 466 YLGHKTIHFE-----------EIAGKGAKQLTFNQISL-EEAGPYAAEDADITLRLHNAI 513

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                        L D E  L  +   +   G  ID   + +  + +A    +L+ ++ +
Sbjct: 514 WTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLRQQSQDLATRIAELESEVHE 573

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +   T  L+  LF    + ++  +     S  S   + +LA +  L +     
Sbjct: 574 EAGEPF-NLGSTKQLQHVLFEKMSLPIIKKTPKGAPST-SEDVLQELALEYPLPKKIMEY 631

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + ++   GR+  +      + TGR S      QN+P +       
Sbjct: 632 RGLTKLKNTYTDKLPKMINHRTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------- 683

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR   +   G K V AD + IE R++A ++G+   + 
Sbjct: 684 -----------------NEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLD 726

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456
           AFA+G+DI+  T A+ F  P+D+V+ EQR   K +   L Y   A    K      +   
Sbjct: 727 AFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQ 786

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +  + +       + D                         ++ +   +      A+ 
Sbjct: 787 KYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAIN 846

Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519
             + GTA +++K A       + +
Sbjct: 847 APMQGTAADIIKMAMIKVDDWIRK 870



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 17/95 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619
            RRL   D+K              R            +Q  + DI+   M          
Sbjct: 821 GRRLYLPDIKASN---GARRKGAERAAINAP------MQGTAADIIKMAMIKVDDWIRKN 871

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
             +   +++ VHDE+V E  +    + V T+ +LM
Sbjct: 872 ASDDVTMMMQVHDELVFEIREDKVETYVSTITALM 906


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 115/590 (19%), Positives = 196/590 (33%), Gaps = 89/590 (15%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D+ET S       +  + +     +A      +A+D  P +L DRT    +   L   
Sbjct: 315 SVDLETTSLNPLEADIVGISLSFRDHEACYIPVGHAYDGAPAQL-DRT---LVLEGLRPL 370

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKNAC 113
           L D  V  V  N  ++  + ++  GI +    W  T V +         +GL  SL    
Sbjct: 371 LTDPAVRKVGQNLKYDYQVLRRH-GIVMAGV-WCDTMVASYLINPVRSGHGLD-SLAVEH 427

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L      +     +GK  +         +  Y C  A+   AW L   +  R  EA  E 
Sbjct: 428 LDHRMISYEEVAGKGKDQLNFARVPVEKASTYSCEDADA--AWLLHRLFLPRVAEAGME- 484

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             RL    D E  L  +   +   G ++DL L+ +L   +  +   L+E ++ L      
Sbjct: 485 --RLF--FDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMALAPEPF- 539

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGS 287
           +      L   LF    +     ++       +   + +LA+        IL     +  
Sbjct: 540 NLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAAILRYRGLAKL 599

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L   V    GR+  +      + TGR S      QN+P +             
Sbjct: 600 KSTYTDALPRLVHPASGRVHTSYN-QTVTNTGRLSSSEPNLQNIPVRT------------ 646

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   IA  G  ++ AD + IE RVLA ++ +     AFA  E
Sbjct: 647 ------------DEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDE 694

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462
           DI+  T A+ F    + V+ E R   K +   + Y  G    AK            +  +
Sbjct: 695 DIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNY 754

Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501
                    F D   AE+                      +  ++      AV   + G+
Sbjct: 755 FARHPGARAFLDGCVAEAEARGYVTTLMGRRLPIPDIASSNGNIRAFAQRNAVNYPIQGS 814

Query: 502 ACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     + +       +L   + +     V EG   +  R+  
Sbjct: 815 AADIIKAAMVRVTERMRREGLTSRLIMQVHDELVFEVPEGERTAMERLVQ 864


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 99/573 (17%), Positives = 194/573 (33%), Gaps = 99/573 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       +  V     A +A    C + +   P +L        + + L   L 
Sbjct: 202 DTETTSLDYMQAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQL----SLECVLAALKPLLE 257

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           +     V  N  +++ +    L  DI  +     ++L     N + +      LA  + +
Sbjct: 258 NPNKHKVGQNLKYDKHVL---LNHDIDLQGIAYDTMLESYVCNSVATRHDMDSLARFYLD 314

Query: 121 HLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             T   +   GK    +     ID               ++   Y   D + T +L + +
Sbjct: 315 RSTIHFEDVAGKKGAKQLTFNQIDI--------------EIAAPYAAEDADVTLQLHQAI 360

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P           L   E  L  +   I   G  +D  L+ +    + Q  K+L+++   
Sbjct: 361 WPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLKELEKEAFD 420

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +       S     L + LF    + ++  +     S      + +LA D  L ++    
Sbjct: 421 IAGEEFNLS-SPKQLGVILFEKLELPIIKKTPKGAPSTAEE-VLQELALDYPLPKVLIEH 478

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + ++   GR+  +      + TGR S      QN+P +       
Sbjct: 479 RGLSKLKSTYTDKLPQMINPATGRIHTSY-HQAVTATGRLSSSDPNLQNIPIR------- 530

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  G K++ AD + IE R++A ++G++  ++
Sbjct: 531 -----------------NAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLE 573

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF  G+D++  T A+ F   +D+V++EQR   K +   L Y       AK      +   
Sbjct: 574 AFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSAFGLAKQLGVGRNDAQ 633

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +  + +      ++ D                       +  + +   +      A+ 
Sbjct: 634 QYIDVYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYLPEINARNGMRRQAAERTAIN 693

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
             + GTA +++K+A  A  Q +           
Sbjct: 694 APMQGTAADIIKRAMIAVDQWLCPTNPKDESAV 726



 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 13/67 (19%)

Query: 603 QAISRDILCEGMKNAT------------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649
           Q  + DI+   M                     +++ VHDE+V E  ++   +V   L  
Sbjct: 697 QGTAADIIKRAMIAVDQWLCPTNPKDESAVNAKMIMQVHDELVLEVKESDLDAVREKLKR 756

Query: 650 LMTKNPS 656
           +MT    
Sbjct: 757 VMTTTVE 763


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/606 (16%), Positives = 197/606 (32%), Gaps = 121/606 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
           +  D ET S            A+QA +   ++A  +                  +  D  
Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
              L   L D   + V  ++ ++  +                T + +      +      
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   +   GK      F + +I                +  G Y   D +
Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487

Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L             L+D E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276
             L+     L      +      L   L+   G+ ++  +  T +   + + + +LA+ D
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L ++     ++ KL +     L E ++   GR+  +      + TGR S      QN+
Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G KL+ AD + IE R++A
Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +   L Y       AK
Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
                       + ++         + +  +A++                      +  M
Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEG 535
           +      A+   + GTA +++K+A  A            + +LQ+  +L       + E 
Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLLESGLDARVILQVHDELVLEVREDLVEQ 880

Query: 536 GSISAR 541
                R
Sbjct: 881 VREGIR 886


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/560 (18%), Positives = 199/560 (35%), Gaps = 93/560 (16%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRT---EQSAMPSD--- 56
           D ET +   +     GV    E  +A     A+   D      D T   E + +P +   
Sbjct: 415 DTETTALDAMSAKLCGVALALEPGRACYIPLAHRAGDG----LDFTGAGEIAQLPMESAL 470

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKN 111
             L   L D++V+ +  N  ++ ++ ++   I +           A      GL     +
Sbjct: 471 PRLKALLEDDSVLKIGQNIKYDALIMRRHGDIRVAPYDDTMLMAYACDQGRGGLAGFGMD 530

Query: 112 ACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166
                +             +GKA     C     +  Y    A+  ++ W LF    +  
Sbjct: 531 ELSKRHLGHTPIAFTDVAGKGKAQSTFDCIAVDKATEYAAEDADVTLRLWHLF--RARIA 588

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    ++  L      ER +  +   +   G  +D  ++ +L    AQ   +L+++I +
Sbjct: 589 AEGMAAVYATL------ERPMPAVLGQMEFNGIEVDRTVLSRLSGDFAQSLARLEDEIYE 642

Query: 227 LTD--GIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDL-- 277
           L      I S +Q   L    F + G       +       L+ ++S  ++T+  + L  
Sbjct: 643 LAGQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLEDLVSSEDLTEDQRRLPA 702

Query: 278 -ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L     +       ++L + + +D GR+        ++ TGR S      QN+P + R
Sbjct: 703 KLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYSL-ASTSTGRLSSTEPNLQNIPIRTR 761

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +RS  IA+ GKKL+ AD + IE RVLA +A  
Sbjct: 762 ------------------------EGRMIRSAFIAAPGKKLISADYSQIELRVLAHMADI 797

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
                AFA G DI+  T ++ F  P+  +  E R   K +   + Y     G ++     
Sbjct: 798 PALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAFGLSQQLGIP 857

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
               G  + ++ +       + D                     + + ++    M+  + 
Sbjct: 858 RQEAGDYIAKYFERFPGIRAYMDAMRSKVHEDGHVETLFGRKIHFPEIKTPKWNMRQFFE 917

Query: 491 EFAVKDKLIGTACELVKKAW 510
             A+   + GTA +++++A 
Sbjct: 918 RAAINAPIQGTAADIIRRAM 937



 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNG--YDIVLTVH 629
              +    T +    + +        +Q  + DI+   M        + G    ++L VH
Sbjct: 899 KIHFPEIKTPKWNMRQFFERAAINAPIQGTAADIIRRAMVRVPAALEQAGVRARMLLQVH 958

Query: 630 DEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAE 666
           DE+V E  D+    ++  +  +M +   P+ A  +PLK +
Sbjct: 959 DELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVD 998


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/606 (16%), Positives = 197/606 (32%), Gaps = 121/606 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
           +  D ET S            A+QA +   ++A  +                  +  D  
Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
              L   L D   + V  ++ ++  +                T + +      +      
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   +   GK      F + +I                +  G Y   D +
Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487

Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L             L+D E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276
             L+     L      +      L   L+   G+ ++  +  T +   + + + +LA+ D
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L ++     ++ KL +     L E ++   GR+  +      + TGR S      QN+
Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G KL+ AD + IE R++A
Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +   L Y       AK
Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
                       + ++         + +  +A++                      +  M
Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEG 535
           +      A+   + GTA +++K+A  A            + +LQ+  +L       + E 
Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQ 880

Query: 536 GSISAR 541
                R
Sbjct: 881 VREGIR 886


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/615 (16%), Positives = 192/615 (31%), Gaps = 127/615 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD 56
             +  D ET              A+QA +   +++           T       + +  D
Sbjct: 342 KLIAFDTETT-GID---------AQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRD 391

Query: 57  -----LLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRWI----CTSVLARTNGL 105
                L   L D  ++ V  ++ F+  +       G              T + +     
Sbjct: 392 SVLLALKPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAFDTMLESYVLNS 451

Query: 106 PS-SLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFG 160
            +       LA  + +H T   +   GK      F +  +                +  G
Sbjct: 452 TATRHDMDSLAQKYLDHSTVSFQDIAGKGAKQLTFDQIPL----------------EQAG 495

Query: 161 EYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L + L             L+D E  L  +   I  +G  +D  L+   
Sbjct: 496 PYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQ 555

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
              +  +   L+ +  ++      +      L   L+   G+ ++  +     S      
Sbjct: 556 SIELGDKMVALEREAFEIAGEEF-NLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEE-V 613

Query: 270 ITQLAKD-LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           + +LA+D   L R+     ++ KL +     L E ++   GR+  +      + TGR S 
Sbjct: 614 LAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVASTGRLSS 672

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +                              +R   IA  G KL+ AD +
Sbjct: 673 SDPNLQNIPVRT------------------------AEGRRIRQAFIAPPGYKLLAADYS 708

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++ ++  + AF N  D++  T A+ F   +  V+ +QR   K +   L Y 
Sbjct: 709 QIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYG 768

Query: 443 GGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------- 488
            GA+                +  +         + D  +A++      +           
Sbjct: 769 MGAQKLGKDIGVDTKQAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPE 828

Query: 489 -----------YPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEG 527
                          A+   + GTA +++KKA  A            + +LQ+  +L   
Sbjct: 829 INSNKPQERAGAERTAINAPMQGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLE 888

Query: 528 FACVVQEGGSISARR 542
               + +      R 
Sbjct: 889 VREDLVDQVREEIRG 903



 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
           Q  + DI+ + M         +G D  ++L VHDE+V E  +     V   +   M+
Sbjct: 850 QGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLEVREDLVDQVREEIRGHMS 906


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/612 (18%), Positives = 209/612 (34%), Gaps = 92/612 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
               D ET S       L  VG+   AE   A     A+ +   P +L     +  + + 
Sbjct: 331 TFAFDTETNSLDYMEAEL--VGLSFCAEPGVACYVPVAHDYPGAPDQL----SRDYVLNQ 384

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L D     V  +  ++  +     GI +       T + +     +        LA
Sbjct: 385 LKDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFA-GDTMLESYVLDSVGGRHDMDSLA 442

Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             +    T   +   GK      F + S++   PY C  A+    WQL+ EY    + AT
Sbjct: 443 ERYLGRRTISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADIT--WQLY-EYLTNQLTAT 499

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             L       +D E  L  + Q+I   G  +  +++ +   +I     +L+ +   L   
Sbjct: 500 ESLHTV---YTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIELEAEAHDLAGR 556

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +   T  L   LF    + ++  +     S      + +LA D  L ++      + 
Sbjct: 557 PF-NLGSTKQLGEILFDELKLPIIKKTPKGAPST-GEEVLVELALDYPLPKVLLEYRGLA 614

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   ++   GR+  +      + TGR S      QN+P +           
Sbjct: 615 KLKSTYTDKLPTLINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRS---------- 663

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                         +    +R   IA     +V AD + IE R++A ++G+   + AF  
Sbjct: 664 --------------VEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGLLTAFNE 709

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G D++  T A+ F   +D+V+ +QR   K +   L Y       AK      +     + 
Sbjct: 710 GLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIYGMSAFGLAKQLHIGRAESQAYID 769

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            + Q       + D                       +  + +          A+   + 
Sbjct: 770 TYFQRYPGVLDYMDRTRQGAHERGYVETIFGRRLYLPEINARNKMRVQAAERTAINAPMQ 829

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G+A +++KKA  A      +  +D +     ++Q    +    V  VP+  +   +  V 
Sbjct: 830 GSAADIIKKAMLAVD----RFLRDSSLESKMIMQ----VHDELVFEVPKHELDALRAGVI 881

Query: 560 IVLPSSRRLVYS 571
             + S+ +L   
Sbjct: 882 TAMESAAQLAVP 893



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV 644
           Q  + DI+ + M    +          +++ VHDE+V E P     ++
Sbjct: 829 QGSAADIIKKAMLAVDRFLRDSSLESKMIMQVHDELVFEVPKHELDAL 876


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/575 (18%), Positives = 198/575 (34%), Gaps = 103/575 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L    V   A +A     A+ ++  P +L    ++  +   +   L 
Sbjct: 353 DTETTSLNYMAAELVGFSVSVEAGKAAYIPVAHDYEGAPEQL----DRDWVLEQIKPVLE 408

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
           D + + V  +  ++  +       DI  K     ++L     N   +      LA  F  
Sbjct: 409 DASQLKVGQHLKYDANVLANY---DIELKGIEFDTMLESYIFNSTANRHDMDSLAKKFLS 465

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           H +   E            I          N ++  +    Y   D + T  L + +   
Sbjct: 466 HKSVSFE-----------EIAGKGAKQKTFNQIEL-EQAAFYAAEDADITFRLHQAIWAK 513

Query: 181 SD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            +            E  L  +   +   G  ID DL+ +    IA   ++L+    ++  
Sbjct: 514 LEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQSSEIATRLEELEIKAHEMAG 573

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                S     L+  LF+   + ++  +     S  +   + +LA D  L R+     ++
Sbjct: 574 QAFNLS-SPKQLQEILFVKLELPILKKTPKGQPST-AEPILQELALDYELPRIIMEHRSL 631

Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            KL     + L E +   GR+  +      + TGR S      QN+P +           
Sbjct: 632 SKLKSTYTDKLPEMIQKTGRIHTSY-HQAVTATGRLSSTDPNLQNIPIRT---------- 680

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G KL+ AD + IE R+++ ++ +   ++AFAN
Sbjct: 681 --------------AEGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLLEAFAN 726

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
            +D++  T A+ F   +D+V+ EQR   K +   L Y       AK            +Q
Sbjct: 727 NKDVHKATAAEVFEVALDEVTGEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAQKYIQ 786

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++ +      T+ +                         ++ +  M+      A+   + 
Sbjct: 787 RYFERYPGVRTYMENTREMAREKGYVETLFGRRLYLPDIKASNAMMRQAAERTAINAPMQ 846

Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDL 524
           GTA +++K+A    H          + +LQ+  +L
Sbjct: 847 GTAADIIKRAMIEMHAWLKDTDLDIKMILQVHDEL 881



 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618
            RRL   D+K   + +  A     R            +Q  + DI+   M         T
Sbjct: 817 GRRLYLPDIKASNAMMRQAA---ERTAINAP------MQGTAADIIKRAMIEMHAWLKDT 867

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
                ++L VHDE++ E  ++   +    +  +M
Sbjct: 868 DLDIKMILQVHDELIFEVKESDLSAAQEKILDIM 901


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/606 (17%), Positives = 202/606 (33%), Gaps = 121/606 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------LWDRTEQSAM 53
           +  D ET S            A+QA +   ++A  +              + D+ E+ A+
Sbjct: 338 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
              L   L D   + V  ++ ++  +                T + +      +      
Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANASTPIAMQGVAYDTMLESYVLDSTATRHDMD 447

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   +   GK      F + +I                +  G Y   D +
Sbjct: 448 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 491

Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L             L+D E  L  +   I   G  +D +L+      + ++ 
Sbjct: 492 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 551

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276
             L+     L      +      L   L+   G+ ++  +  T +   + + + +LA+ D
Sbjct: 552 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 609

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L ++     ++ KL +     L E ++   GR+  +      + TGR S      QN+
Sbjct: 610 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 668

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   IA  G KL+ AD + IE R++A
Sbjct: 669 PIRT------------------------AEGRRIRQAFIAPQGYKLLAADYSQIELRIMA 704

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            +A ++  + AF +  D++  T A+ F  P++ VS +QR   K +   L Y       AK
Sbjct: 705 HLAKDEGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 764

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
                       + ++         + +  +A++                      +  M
Sbjct: 765 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 824

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEG 535
           +      A+   + GTA +++K+A  A            + +LQ+  +L       + E 
Sbjct: 825 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLRESGLDARVILQVHDELVLEVREDLVEQ 884

Query: 536 GSISAR 541
                R
Sbjct: 885 VREGIR 890


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/528 (19%), Positives = 182/528 (34%), Gaps = 87/528 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L   L D +V+ VA N  ++ ++ K+  GI + S             G      ++  
Sbjct: 512 SRLKNLLEDPSVLKVAQNLKYDYLVMKRH-GIAMQSFDDTMLMSYVVDAGNGMHGMDSLS 570

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                      ++    IA   K S+     D  +A           Y   D + T  L+
Sbjct: 571 ERWLGHTPIPYKD----IAGTGKASVSFDFVDIDKATT---------YAAEDADVTLRLW 617

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              ER L  +   + +RG  +D  ++ +L   +AQ    L+++I
Sbjct: 618 HVLKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEI 677

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283
            +L             L   LF   G+     ++ T +   S S +  LA     L R  
Sbjct: 678 YRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TGQWSTSASVLEDLAAVGHELPRKI 735

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L   V  + +   T     A+ TGR S      QN+P +     
Sbjct: 736 VDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAATTTGRLSSSEPNLQNIPVRT---- 791

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R+  IA+ G KLV AD + IE RVLA +A     
Sbjct: 792 --------------------AEGRRIRTAFIATPGHKLVSADYSQIELRVLAHVADIPQL 831

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y     G A       S 
Sbjct: 832 RQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIERSE 891

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
            G  ++++ +       + +                     +    S +  M+      +
Sbjct: 892 AGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIFGRRAHYPDIRSSNPSMRAFNERAS 951

Query: 494 VKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEG 535
           +   + G+A +++++A       +       ++   + +     V+EG
Sbjct: 952 INAPIQGSAADIIRRAMVKMEPALDEAKLAARMLLQVHDELIFEVEEG 999


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/529 (18%), Positives = 175/529 (33%), Gaps = 95/529 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D  ++ +A N  ++ ++  +  G+D+               G   +  +     
Sbjct: 475 LKPMLEDRGILKIAQNLKYDWLVMTRH-GVDVDPYDDTMLLSYTVDAGKGGNGMDELSER 533

Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                    +E    GK++I  F K +ID                    Y   D + T  
Sbjct: 534 WLGHKPIPFKEVCGSGKSMIT-FDKVAIDKA----------------TAYAAEDADVTLR 576

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER +  +   +  RG  +D  ++ +L    AQ    L+ 
Sbjct: 577 LWLTLKPRLASDHMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGDFAQGAAALES 636

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I +L      +      L   LF   G+     ++ T     S   +  LA +   L  
Sbjct: 637 EIYELAGETF-NVGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSAQVLEDLAAEGHPLPS 694

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   ++ + +   T     A+ TGR S      QN+P +  +
Sbjct: 695 KIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYSLAATTTGRLSSSEPNLQNIPVRTEA 754

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G+KL+ AD + IE RVLA +A   
Sbjct: 755 ------------------------GRKIRQAFIAEKGQKLISADYSQIELRVLAHMADIP 790

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F TPI+ +    R   K +   + Y     G A       
Sbjct: 791 QLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLANQLGISR 850

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
              G  ++ + Q       + +                     + +  + +  M+  Y  
Sbjct: 851 GEAGDYIKTYFQRFPGIKDYMEAVKKQVHADGYVTTIFGRKAHYPEVNTKNPNMRAFYER 910

Query: 492 FAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQE 534
            A+   + G+A +++++A           +   Q+   + +     V E
Sbjct: 911 AAINAPIQGSAADILRRAMVRMEDRLTASKLDAQMLLQVHDELIFEVPE 959


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/599 (17%), Positives = 196/599 (32%), Gaps = 121/599 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
           +  D ET S            A+QA +   ++A  +                  +  D  
Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
              L   L D   + V  ++ ++  +                T + +      +      
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   +   GK      F + +I                +  G Y   D +
Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487

Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L             L+D E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276
             L+     L      +      L   L+   G+ ++  +  T +   + + + +LA+ D
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L ++     ++ KL +     L E ++   GR+  +      + TGR S      QN+
Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G KL+ AD + IE R++A
Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +   L Y       AK
Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
                       + ++         + +  +A++                      +  M
Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534
           +      A+   + GTA +++K+A  A            + +LQ+  +L       + E
Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVE 879


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/592 (18%), Positives = 200/592 (33%), Gaps = 114/592 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVK-----LWDRTEQSAMP 54
            ID+ET S  P           +A I   ++++ D      PV      + D+   + + 
Sbjct: 316 AIDLETTSLNPF----------EAEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLAHVL 365

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
             L   L D  +  +  N  ++  + ++  GI++  +   C ++LA     P  SS    
Sbjct: 366 QALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEM--EGIWCDTMLASYLLNPNRSSHGLN 422

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            LA+   +H        A +A   K   +    +  +A           Y   D +AT  
Sbjct: 423 ALAVELLDHKMI---SYADVAGSGKDQKNFAQVEVEKA---------SIYSCEDADATWL 470

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L K  +P          L + E  L  +   +   G ++DL L+ KL      +  +L+ 
Sbjct: 471 LHKLFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELER 530

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +I +       +      L   LF    +     ++       +   + +LA +  + RL
Sbjct: 531 EIFQCAGTTF-NINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAEHEIGRL 589

Query: 283 ASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL     + L + V S  GR+  +      + TGR S      QN+P +   
Sbjct: 590 ILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYN-QAVTNTGRLSSSEPNLQNIPIRS-- 646

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G  ++ AD + IE RVLA ++ + 
Sbjct: 647 ----------------------EEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDR 684

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
               AFA  EDI+  T A+ F      V+ E R   K +   + Y  G    AK      
Sbjct: 685 VFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSLAKELGVST 744

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 +  +         F D    E+                      +  ++     
Sbjct: 745 KVAKEFIDNYFDRHAGARVFLDGCVREAEAKGHVTTILGRRLPIPDINSTNGNIRSFAQR 804

Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQ 533
            A+   + G+A +++K+A             K + ++Q+  +L        +
Sbjct: 805 NAINYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLEEK 856



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTL-CSLM 651
           +Q  + DI+ + M        + G    +++ VHDE+V E P     ++  L C  M
Sbjct: 811 IQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLEEKLTMEKLVCHEM 867


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/589 (17%), Positives = 194/589 (32%), Gaps = 121/589 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
           +  D ET S            A+QA +   ++A  +                  +  D  
Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
              L   L D   + V  ++ ++  +                T + +      +      
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   +   GK      F + +I                +  G Y   D +
Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487

Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L             L+D E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276
             L+     L      +      L   L+   G+ ++  +  T +   + + + +LA+ D
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L ++     ++ KL +     L E ++   GR+  +      + TGR S      QN+
Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G KL+ AD + IE R++A
Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +   L Y       AK
Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
                       + ++         + +  +A++                      +  M
Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +      A+   + GTA +++K+A  A            + +LQ+  +L
Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDEL 869


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/592 (17%), Positives = 198/592 (33%), Gaps = 120/592 (20%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +    + 
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRDRALAL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114
           L   L DE    V  N  ++R +       DI  +  +  ++L     N +        L
Sbjct: 405 LKPLLEDENAHKVGQNLKYDRGILANY---DIELRGIVFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  + +H T   E   GK      F + ++                +  G Y   D + T
Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  ++ P             + +  L  +   +   G +I   ++ K  E +     +
Sbjct: 506 LQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLNE 565

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L
Sbjct: 566 LEQKAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y       A+   
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLARQLN 778

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490
                    +  + +       + +  +A++      +                      
Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAG 838

Query: 491 --EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
               A+   + GTA +++K+A      W    Q  +++   + +     V +
Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHK 890



 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E       SV   +  LM
Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLM 904


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 173/529 (32%), Gaps = 95/529 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D  V+ +A N  ++ ++     G+++ S             G   +  +     
Sbjct: 267 LKPMLEDPAVLKIAQNLKYDWLVMTHY-GVNVTSYDDTMLLSYTVDAGKGGNGMDELSER 325

Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                    +E    GK++I  F K  +D                    Y   D + T  
Sbjct: 326 WLGHKPIPFKEVCGSGKSMIT-FDKVPLDKA----------------TAYAAEDADVTLR 368

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              ER +  +   +  RG  +D  ++ +L    AQ    L+ 
Sbjct: 369 LWQVLKPRLASDRMATVYETLERPMVPVLARMEQRGIAVDRQMLSRLSGDFAQGMAGLEA 428

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I +L      +      L   LF   G+     ++ T     S S +  LA +   L  
Sbjct: 429 EIHELAGESF-NIGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSASVLEDLAAEGHTLPS 486

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   +  D +   T     A+ TGR S      QN+P +   
Sbjct: 487 KIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAATTTGRLSSSEPNLQNIPVRT-- 544

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                  A   +R   +A  G KL+ AD + IE RVLA +A   
Sbjct: 545 ----------------------AAGRKIRQAFVAEKGMKLISADYSQIELRVLAHMADIP 582

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF  G DI+  T ++ F TPI+ +    R   K +   + Y     G A       
Sbjct: 583 QLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLAAQLGISR 642

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 ++ + +       + +                     +    + +  M++ Y  
Sbjct: 643 GEASDYIKTYFERFPGIKEYMEATKKQVHATGYVTTIFGRKAHYPDVNTKNPNMRNFYER 702

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            A+   + G+A +++++A       +L      Q+   + +     V E
Sbjct: 703 AAINAPIQGSAADILRRAMVRMEDRLLSSKLDAQMLLQVHDELIFEVPE 751


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/543 (19%), Positives = 184/543 (33%), Gaps = 96/543 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +V+ +A N  ++ ++  +  GID+               G P       LA 
Sbjct: 476 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDQLAE 534

Query: 117 NFSEH---LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            +  H     K   G        K S+     D  +A           +   D + T  L
Sbjct: 535 KWLGHTPLQLKDVTGS------GKSSVGFDQVDIDKATA---------HAAEDADVTLRL 579

Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L+E+
Sbjct: 580 WLVLKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEE 639

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282
           I +L    I +      L   LF   G+     ++ T +   S   +  LA +   L R 
Sbjct: 640 IYQLIGERI-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQLLEDLAAEGHELPRK 697

Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                 + KL     + L   +  D R   T     A+ TGR S      QN+P +    
Sbjct: 698 IVDWRQLTKLKSTYTDALPGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIPVRT--- 754

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  IA  G +LV AD + IE RVLA +A    
Sbjct: 755 ---------------------AEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQ 793

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AFA+G DI+  T ++ FN P++ +  E R   K +   + Y     G A        
Sbjct: 794 LRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPRE 853

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ +       + +                     +    S +  ++      
Sbjct: 854 EASNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNERA 913

Query: 493 AVKDKLIGTACELVKKAW--------RAKHQGVL--QLWKDLTEGFACVVQEGGSISARR 542
           ++  +L GTA +++++A         RAK    +  Q+  +L         E      R 
Sbjct: 914 SINARLQGTAADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVVRH 973

Query: 543 VAN 545
           V  
Sbjct: 974 VME 976


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 197/563 (34%), Gaps = 103/563 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    ++  +   L   L D     +  N  F+  +  +  GI+
Sbjct: 374 AAYVPLAHDYLDAPAQL----DRDWVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIE 428

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +   N +        LAL + EH     E   GK      F +  +  
Sbjct: 429 MQGIVF-DTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQIDL-- 485

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191
                         +  G Y   D + T  L   L P  +            E  L  + 
Sbjct: 486 --------------EQAGPYAAEDADITLRLHNTLYPKVEADDKLKHVFENIEMPLVPVL 531

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  +D  L+      IA    ++++   ++ +     S     L+  LF   G+
Sbjct: 532 SRMERTGVYVDSMLLGAQSTEIAVRLDEIEKKAFEIAEQEFNLS-SPKQLQAILFEKMGL 590

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  +   + +LA D  L +L      + KL     + L + V+   GR+
Sbjct: 591 PVLKKTPSGTPST-NEEVLQELALDYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRV 649

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 650 HTSY-HQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIR 684

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G K++  D + IE R++A ++G+   + AF +G+DI+  T A+  +  I+ VS
Sbjct: 685 QAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIENVS 744

Query: 426 KEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTST 471
            EQR   K +   L Y                 A+ +  +       + ++ ++ ++ ++
Sbjct: 745 SEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYMNVYFERYPGVLEYMESTRNAAS 804

Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
            + +              +S +   +      A+   + GTA +++K A  A        
Sbjct: 805 EQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAVDDWVQQQ 864

Query: 515 -QGVLQLWKDLTEGFACVVQEGG 536
            +G ++L   + +     V+E  
Sbjct: 865 PEGDVRLLMQVHDELVFEVKESA 887


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/570 (19%), Positives = 202/570 (35%), Gaps = 103/570 (18%)

Query: 4   LFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D+ET S  P    L  + +    +++      +A DDE +   D   ++  P     
Sbjct: 334 IALDVETTSTDPMTARLVGIALATSGQRSFYVPVNHANDDEQLDA-DEVREALSP----- 387

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D   +  AH+  ++ ++ ++      P  R    +++A      ++L     +L F+
Sbjct: 388 LLADPNTVVYAHHGKYDALVLERA---GYPRPRIAFDTMIAAYLLGENALDL--KSLAFN 442

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               +M E   LI R      +    D T        Q  G+Y   DVEAT  L + L P
Sbjct: 443 RLGMEMTEITTLIGR----GRNQLTMDLTDV------QAAGDYACADVEATYRLVEVLQP 492

Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +           E  L  +   +   G  +D+DL+  L   +  +  +L+ +I  L  
Sbjct: 493 DLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELEREIYGLAK 552

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   T  L   LF   G+     ++      +S   +  L     +         +
Sbjct: 553 HEF-NINSTRQLATVLFDELGLPAGRRTKTG--YSVSQEVLENLRHAHPIVDCILEYRQL 609

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           LKL     + L E V+   GR+  +     A+ TGR S      QN+P +          
Sbjct: 610 LKLKSTYVDALPEQVNPETGRIHTSFNQTIAA-TGRLSSTDPNLQNIPVRT--------- 659

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS---------NGKKLVVADLAGIEARVLAWIAG 394
                               VR   IA              L+ AD + IE R++A ++G
Sbjct: 660 ---------------ELGRSVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAHLSG 704

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++  + AF  G+DI+  T A  F  P+++V+ + R + K +   + Y     G A+    
Sbjct: 705 DERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYGMQAYGLARDTGM 764

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                   + ++   +     F +                         +S ++  +   
Sbjct: 765 SRQDAQRFIDRYMARLPGVRAFLERTKRQALQQGYVTSMFGRRRYTPDIDSSNVNRRLAA 824

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              A+   L G+A +++K A    H  + +
Sbjct: 825 ERMAINMPLQGSAADIMKIAMIRVHDEMRR 854


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/620 (17%), Positives = 206/620 (33%), Gaps = 101/620 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------------TEQ 50
           L  D ET S  P+          QA +   + A                        T +
Sbjct: 398 LAFDTETTSVDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGTVE 447

Query: 51  SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
             +P     + L   L D +V+ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 448 GQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDA 504

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K S+     D  RA           
Sbjct: 505 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSSVTFDMVDIDRATA--------- 549

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 550 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 609

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I +L             L   LF   G+     ++ T +   S   + 
Sbjct: 610 DLAQAAAAYEDEIYELAGERFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 667

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   R   T     ++ TGR S    
Sbjct: 668 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCYAMASTSTGRLSSSDP 727

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 728 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 763

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y   A
Sbjct: 764 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 823

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                +A+   +  ++  Q ++  + FE +   + +    +    E    + + G     
Sbjct: 824 ---FGLANQLSIPREEAGQYIR--TYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHY 878

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                RA +  +    +         +Q   +   RR        + + K    ++L   
Sbjct: 879 --PDIRASNPQIRAFNE--RAAINAPIQGSAADIIRRAMIRMEDALAKEKLAARMLLQVH 934

Query: 566 RRLVYSDVKGDCSYLNTATS 585
             L++   + +     +   
Sbjct: 935 DELIFEVPENEVEKTVSVVR 954


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/573 (17%), Positives = 190/573 (33%), Gaps = 105/573 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ ++  PV+L    ++ A+   L   L D     V  N+ ++  +        
Sbjct: 364 AAYVPLAHDYEGAPVQL----DREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPPI 419

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
                   T + +      +       LA  + +H T   E   GK      F + ++D 
Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQITLDK 479

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
                            G Y   D + T  L   L             L D E  L  + 
Sbjct: 480 A----------------GPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVL 523

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +  +L+    +L      +      L   L+   G+
Sbjct: 524 ARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETF-NLGSPKQLGTILYDKLGM 582

Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
            ++  +     S  + + + +LA+    L  +     ++ KL     + L   ++   GR
Sbjct: 583 PVLSKTAKGQPST-AEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGR 641

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  + Q    + TGR S      QN+P +                              +
Sbjct: 642 IHTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRI 676

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 677 RQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDV 736

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + +QR   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 737 TTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQA 796

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++K+A          
Sbjct: 797 AEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSE 856

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARR 542
                + +LQ+  +L       + E      R+
Sbjct: 857 SGLDARVILQVHDELVLEVREDLVEQVKDEIRQ 889



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+      L        R            +Q  + DI+   M    
Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVKVD 851

Query: 619 K----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
                +G D  ++L VHDE+V E  +     V   +   M++ 
Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSQA 894


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/594 (16%), Positives = 194/594 (32%), Gaps = 117/594 (19%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           K G  AY         A+ + D P +L        +   
Sbjct: 337 DTETTSLDYMQAQLVGMSFSVKAGEAAY------LPVAHDYPDAPEQL----SLEFVMQK 386

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLA 115
           L   L D     V  N  +++ +     G ++   ++  T + +   N + +      LA
Sbjct: 387 LGPILADANKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMDSLA 444

Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L +  H     +   GK      F +  +D                    Y   D + T 
Sbjct: 445 LKYLGHKNISFEDIAGKGKKQLTFNQIELDKAA----------------PYAAEDADITL 488

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L P             D E  L  +   I   G  ID  ++    + + +   +L
Sbjct: 489 RLHEVLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGAHSQRLGERLIEL 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +++  ++       S     L++ LF    + ++  +     S      + +LA D  L 
Sbjct: 549 EKEAFEIAGEPFNLS-SPKQLQVLLFEKLELPIIKKTPKGAPSTAEE-VLQELAHDYPLP 606

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++      + KL     + L   V+   +   T      + TGR S      QN+P +  
Sbjct: 607 KVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRS- 665

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA++G K+V AD + IE R++A ++ +
Sbjct: 666 -----------------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQD 702

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              + AFANG D++  T A+ F   +D V+ + R   K +   L Y       A+     
Sbjct: 703 KGLLNAFANGLDVHSATAAEVFGVDLDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVP 762

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYP 490
                  + ++ +       + +                       +  + +   +    
Sbjct: 763 RHEAQHYIDKYFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAE 822

Query: 491 EFAVKDKLIGTACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQEGGS 537
             A+   + GTA +++KKA  + +          ++L   + +     ++   +
Sbjct: 823 RAAINAPMQGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCA 876



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNATKNGY-------DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M +  +  Y        +++ VHDE+V E       +    +C LM++ 
Sbjct: 831 QGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQA 890


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/589 (18%), Positives = 193/589 (32%), Gaps = 96/589 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60
           ID ET S  P+    VG+    +         A     V   D   Q    A+ + +  +
Sbjct: 374 IDTETTSIDPMLAQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQLSREAVLARMRLW 433

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L DE    V  +  ++  +F    GI +       T + +       +     LA     
Sbjct: 434 LEDEIRSKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 491

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D        A     EY   D + T  L + L P 
Sbjct: 492 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 539

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         E    ++ Q +   G  +D + + +    +      L+++   L  
Sbjct: 540 VAEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGHRLLALEQEAYALAG 599

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F    + +V  +     S      + +LA+D  L +L      +
Sbjct: 600 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 657

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  T     A  TGR +      QN+P +          
Sbjct: 658 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 707

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G  +V AD + IE R++A ++G+D  ++AF 
Sbjct: 708 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 752

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+D++  T A+ F     +V+ EQR   KV+   L Y       A           L +
Sbjct: 753 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 812

Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498
            ++       + + D  +  +H            LW+          +      A+   +
Sbjct: 813 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 872

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            GTA +L+K +  A     +Q W +   G     + G  + +R V  V 
Sbjct: 873 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 913


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/601 (15%), Positives = 197/601 (32%), Gaps = 113/601 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S           Y E A +   +++  +                       +
Sbjct: 345 IAFDTETTSLN---------YME-AQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWL 394

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKNA 112
              L   L D ++  V  N  ++  + ++  GI +   +   T + +       S     
Sbjct: 395 LKVLKPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIK-NDTMLASYVFNSVGSRHDMD 452

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            L+L +  H     E            I          N ++  Q    Y   D + T  
Sbjct: 453 TLSLQYLNHKPIKFE-----------EIAGKGAKQLTFNQIELAQA-APYAAEDADITLR 500

Query: 173 LFKRLIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           L   L              L+D E  L  +   + + G ++D +++ K  E IA +  +L
Sbjct: 501 LHHILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDEL 560

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++      +      L+  LF    + ++  +     S      + +LA D  L 
Sbjct: 561 EQKAFEIAGEEF-NLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEE-VLQELAHDYPLP 618

Query: 281 RLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +     ++ KL     + L   ++ D GR+  + Q    + TGR S      QN+P + 
Sbjct: 619 DVILQHRSLAKLKSTYTDKLPRMINPDTGRVHTSYQ-QAVAATGRLSSTEPNLQNIPIRT 677

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   +A  G  +V  D + IE R++A ++ 
Sbjct: 678 ------------------------PEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHLSQ 713

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
           +   ++AFA G+DI+  T ++ F   +++V+ EQR   K +   L Y   A    +    
Sbjct: 714 DASLLRAFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNFGLIYGMSAFGLSRQLDI 773

Query: 451 MASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQYPE------------------ 491
                   + ++ +         E+  +      ++   +                    
Sbjct: 774 PRHEAQAYMDKYFERFPGVLEYMENTRETAKKQGYVSTLFGRRLPLPEIKASNGARRKAA 833

Query: 492 --FAVKDKLIGTACELVKKAW--------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
              A+   + GTA +++K+A             Q  +++   + +     ++   + S  
Sbjct: 834 ERAAINAPMQGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYA 893

Query: 542 R 542
           +
Sbjct: 894 K 894



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 16/78 (20%)

Query: 603 QAISRDILCEGMKN----ATKNGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTK 653
           Q  + DI+   M        + G      +++ VHDE+V E       S    L  +M +
Sbjct: 843 QGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYAKALADVMGE 902

Query: 654 NPSWAKGL--PLKAE-GY 668
               A  L  PL AE G+
Sbjct: 903 ----AADLDVPLLAEYGF 916


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/578 (17%), Positives = 205/578 (35%), Gaps = 80/578 (13%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            +   D ET S       +    V   A+ A     A+ +++ P +L    ++  + + +
Sbjct: 347 KRFAFDTETTSLDYRVAQIVGFSVAFDAQDAYYVPLAHDYENAPAQL----DREQILAQI 402

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLA 115
              L DE+V  + H+  ++  + +      I  K W   ++LA    N + +      ++
Sbjct: 403 KPILEDESVQKIGHHLKYDAHVLENH---GIELKGWYFDTMLASYVLNAVATRHGMDDVS 459

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  HLT   E   GK    + F +  I++  +      HV  ++LF E     ++   
Sbjct: 460 RLYLSHLTTTFEQVAGKGAKQKTFNQIEIETAAHYAAEDAHV-TYRLF-EVLDAKLQKHP 517

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           EL   L    + E  +  +   + + G  +DL  + +L    A     L+  I +L    
Sbjct: 518 ELVNIL---HNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANTMANLESQITELAGQS 574

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL---AKDLILNRLASSGSA 288
             +      +   LF   G+     +  T +   S S + ++     +LIL+    S   
Sbjct: 575 F-NVSSPKQVGEILFDKLGLKGGKKT-ATGQYSTSESVLEKIDHPITELILDYRGLSKLK 632

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               + L +  +SD     T      + TGR S      QN+P +E              
Sbjct: 633 STYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQNIPVRE-------------- 678

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   IA  G+ L+ AD + IE R++A  + ++  + AF +G+D+
Sbjct: 679 ----------EIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDEALVDAFKHGQDV 728

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQ 464
           +  T A+     ++ V+ +QR   K +   L Y        +            + ++ Q
Sbjct: 729 HRRTAAEVLGVALEDVTSDQRRQAKAVNFGLLYGMSEFGLTRQLGFSREESRGYIAKYFQ 788

Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503
                  + +  +  +                         ++      A+   L G+A 
Sbjct: 789 RYPGVLDYMERTRQIAREQGFVETILGRRLYTPDIMASNKMIKQAAERAAINAPLQGSAA 848

Query: 504 ELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           +++K A  A  Q +     ++   + +     V E  +
Sbjct: 849 DIIKMAMIAVDQMLPKDQTKMLLQVHDELVFEVDESIA 886


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/532 (17%), Positives = 178/532 (33%), Gaps = 88/532 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +  T  L+  LF    + ++  +     S  +   + +L+    L ++   
Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLELPVLQKTPKGAPST-NEEVLEELSYSHELPKILVK 632

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+S  GR+  +      + TGR S      QN+P +      
Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE R++A ++G+   I
Sbjct: 686 ------------------NEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +      +  
Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 787

Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494
              +  + Q   S   F                            S +   +      A+
Sbjct: 788 QKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847

Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541
              + GTA +++K+A     + +      ++   + +     V+       R
Sbjct: 848 NAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 194/555 (34%), Gaps = 101/555 (18%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L +  +  V  N  ++  +F    GI++    +  T + + T           LA
Sbjct: 439 QLKPLLENVEIKKVGQNIKYDLTVFANH-GIELQGVAF-DTMLESYTLNSTGRHNMDELA 496

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F K +I++                  EY   D + T 
Sbjct: 497 ERYLDHKTIAFEDIAGKGKNQLTFDKIAIETA----------------TEYAAEDADITM 540

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L ++LI             ++ E  L  +   +   G  ID D +L   + + Q   ++
Sbjct: 541 KLHQQLITSLAKTPSLIKLFNEIEMPLVNVLARVEQNGVLIDSDKLLAQSKEMEQRLAEV 600

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279
           +  +          +  T  L+  LF    + ++  +     S  +   + QLA+   ++
Sbjct: 601 EIAVHTAAGQAFNLA-STKQLQEILFEKLALPVLKKTPKGAPST-NEEVLEQLAQQGHLV 658

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L S   A+ KL     + L + ++   GR+  +      + TGR S      QN+P +
Sbjct: 659 PKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTSY-HQAVTTTGRLSSSDPNLQNIPIR 717

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
             +                           +R   IA +G K+V AD + IE R++A +A
Sbjct: 718 TEA------------------------GRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 753

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  I AFANG+DI+  T A+ F   + +V+ EQR   K +   L Y       A    
Sbjct: 754 NDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIYGMSDFGLANQLA 813

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    + ++ Q   +   F                         + +S++   +  
Sbjct: 814 ISRDEAKEYMARYFQRYPNVQQFMRDIRESASVKGYVETLFGRRLYLPEIKSNNAIRRKA 873

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + GTA +++K A  +  + +              ++    +    +  V +
Sbjct: 874 AERLAINAPMQGTAADIIKIAMISIDKQIR---------ADQNIKMIMQVHDELIFEVKQ 924

Query: 549 LVMRRHKRDVHIVLP 563
             +  +   +   + 
Sbjct: 925 ECIEYYTGLIKTEME 939


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/575 (16%), Positives = 187/575 (32%), Gaps = 107/575 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P++L DRT    +   L   L +     V  N  F++ +  +  GI 
Sbjct: 372 AAYLPLAHDYSDAPIQL-DRT---LVLDKLKPLLENPQKQKVGQNLKFDKSILARC-GIV 426

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE-----GKALIARFCKGSID 141
           +    +  T + +     +        L+  + +H T   E     GK+ +  F + ++ 
Sbjct: 427 LQGIAF-DTMLESYILNTVAGRHDMDSLSQRYLQHKTITFEEIAGKGKSQLT-FNQIAL- 483

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190
                          +    Y   D + T  L   L P            +  E  L  +
Sbjct: 484 ---------------EQAAPYAAEDADITLRLHHCLWPQLQQSKALSWIFTHIEMPLLSV 528

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  ID  ++ +  + +     +L+E    L +     +     L+  L+    
Sbjct: 529 LSRIESTGVLIDRAVLAQHSQELTTRLTELEEQAHLLAEEPFNLA-SPKQLQTILYEKQQ 587

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GR 304
           + ++  +     S      + +LA D  L ++      + KL     + L   ++   GR
Sbjct: 588 LPVLKKTPKGAPST-DEEVLAELALDYPLAKVLLEYRGLAKLKTTYTDKLPSMINPTSGR 646

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 647 VHTSY-HQAVTVTGRLSSREPNLQNIPIRS------------------------EEGRRI 681

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IA  G +++ AD + IE R++A ++ +   IKAF   +DI+  T A+ FN  ++  
Sbjct: 682 RQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVFNVSVETA 741

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474
           + EQR   K +   L Y       A+            +  +       + + +      
Sbjct: 742 TDEQRRSAKAINFGLIYGMSAFGLARQLGIARVEAQHYIDLYFARYPGVANYMEAIRKQA 801

Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               +     +      A+   + GTA +++K A          
Sbjct: 802 ATQGYVTTLSGRRLYLPDINASSAMRRKAAEREAINAPMQGTAADIIKSAMIEIDAWLQH 861

Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
               + ++Q+  +L       V +G     R +  
Sbjct: 862 QPLVRMIMQVHDELVFEVHESVVQGAVEKIRHLME 896


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/534 (16%), Positives = 177/534 (33%), Gaps = 96/534 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + +   P +L    +   + + L   L +  ++ +  N  ++  +     GI 
Sbjct: 363 AAYVPLGHDYPGAPDQL----DFEQVLAKLKPILENADILKLGQNLKYDSNILCNH-GIT 417

Query: 88  IPSKRWICTSVLARTNG-LPSSLKNACLALNF---SEHLTKMEEGKALIAR-FCKGSIDS 142
           +       T + +     + +      LAL +        +   GK      F + ++  
Sbjct: 418 LRGI-TEDTMLESYVLDSVGTRHDMDSLALKYLGRGTTKFQDIAGKGAKQLTFNQIAL-- 474

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +    Y   D + T  L + L P            ++ E  L  + 
Sbjct: 475 --------------EQAAPYAAEDADVTLRLHEVLSPKLKAVPRLHQLYAELEVPLVAVL 520

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  I    +      +A   + L+    +L      +      L   LF   G+
Sbjct: 521 SRIERNGAYISRQSLADHSHELAGRLESLEARAQELAGQAF-NLGSPKQLGEILFDKLGL 579

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRL 305
            ++  +     S      + +LA+D  L  +     ++ KL +     L E +  D GR+
Sbjct: 580 PVIKKTPKGAPSTAEE-VLLELAEDYPLPSVLMEYRSLSKLKSTYTDRLPEVIDPDTGRV 638

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 639 HTSY-HQAVTATGRLSSSDPNLQNIPIRT------------------------EEGRRIR 673

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G++++ AD + IE R++A ++ +   ++AF+ G D++  T A+ F   ++ V+
Sbjct: 674 QAFVAPEGRRILAADYSQIELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVT 733

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            +QR   K +   L Y       A+            ++++       + +    +AE+H
Sbjct: 734 VDQRRKAKAINFGLIYGMSAFGLARQLHIGRGEAQEYIERYFSRYPGVADYMARTRAEAH 793

Query: 482 HLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKH 514
                + +                        A+   + GTA +++KKA  A  
Sbjct: 794 ERGYVETHFGRRLQLPEINAKNKQRQLAAERTAINAPMQGTAADIIKKAMIAVD 847



 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M               +++ VHDE+V E  +T    +   L SLM   
Sbjct: 832 QGTAADIIKKAMIAVDAWLQDSSLDALLIMQVHDELVFEVAETAVAQLSEALPSLMADV 890


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/583 (18%), Positives = 190/583 (32%), Gaps = 109/583 (18%)

Query: 2   SKLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             +  D ET S  P+    VG+    E   A      + + D P +L D  E  A    +
Sbjct: 351 KLMCFDTETTSLDPMTAKIVGMSFSVEAGSAAYLPLKHDYFDAPEQL-DFVETLAKIKPI 409

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-- 115
              L +  +  V  N  +++ +     GI +       T + +       +     LA  
Sbjct: 410 ---LENAAIKKVGQNFKYDQHVLANH-GIALNGIA-HDTMLESYVFESHKTHGMDALAER 464

Query: 116 -LNFSEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L       +   GK      F + ++                ++  EY   D + T +L
Sbjct: 465 HLGIQTISFEEVAGKGAKQVTFNQVTV----------------EVASEYAAEDADITLQL 508

Query: 174 FKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            + + P            S  E     +  TI   G  ID D++      I  +   L+ 
Sbjct: 509 HQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKLVALEN 568

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +L      +      L+  LF   GI     +     S      + +LA D  L ++
Sbjct: 569 QAYELAGQPF-NLGSPKQLQEILFDKLGIKPTKKTPSGAPST-DEDVLQELALDHPLPKV 626

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L + +++  GR+  +      + TGR +      QN+P +   
Sbjct: 627 LLEYRGLAKLKSTYTDKLPKMINAQTGRVHTSYN-QAVAITGRLASSDPNLQNIPVRS-- 683

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G  +V AD + IE R++A ++ ++
Sbjct: 684 ----------------------AEGRRIREAFIAPKGSHIVSADYSQIELRIMAHLSKDE 721

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AFAN EDI+  T A+ F    + V  EQR   KV+   L Y       A+      
Sbjct: 722 GMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIER 781

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PE 491
                 ++++         +    +  +      + Y                       
Sbjct: 782 GAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWVPEINSPNGTRRAGAER 841

Query: 492 FAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
            A+   + GTA +L+K A  A            + ++Q+  +L
Sbjct: 842 AAINAPMQGTAADLIKLAMIAVDKWLRHEKLQTKLIMQVHDEL 884



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 16/135 (11%)

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +  G A    E        V    +      K+  ++     RRL   ++    S   T 
Sbjct: 779 IERGAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWVPEI---NSPNGTR 835

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETP 637
            +   R            +Q  + D++   M          K    +++ VHDE+V E P
Sbjct: 836 RAGAERAAINAP------MQGTAADLIKLAMIAVDKWLRHEKLQTKLIMQVHDELVLEVP 889

Query: 638 DTPYFSVGT-LCSLM 651
           D     V   L  LM
Sbjct: 890 DNELELVKQKLPELM 904


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 104/581 (17%), Positives = 192/581 (33%), Gaps = 110/581 (18%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S       +  V V      A    C + +   P +L        + + L   
Sbjct: 362 SFDTETTSLDVMEARIVGVSVATEPGVAAYIPCGHDYMGAPEQL----SLEWVLNQLKPL 417

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACLALNFS 119
           L DE  + +  N  ++R +     GI +   ++  T + +   N + S      LA  + 
Sbjct: 418 LEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKY-DTMLESYVWNSVASRHNMDDLAQTYL 475

Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++ T   E   GK +    F +  I+   +                Y   D + T  L +
Sbjct: 476 DYKTVTFEELAGKGVKQLTFNQLKIEDAGH----------------YAAEDADITLRLHQ 519

Query: 176 RLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              P             + E  L  +   I   G  +D  L+ +    + +   +L+   
Sbjct: 520 FFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERMVQLERKA 579

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L       S     L + LF    + ++  +     S      + +LA D  L ++  
Sbjct: 580 YELAGQEFNLS-SPKQLGVILFEQLQLPVIKKTPTGTPSTAEE-VLQELALDYPLPKVIM 637

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              A+ KL     + L   ++   GR+         + TGR S      QN+P +     
Sbjct: 638 EYRAMAKLKSTYTDKLPLMINPATGRIHTNY-HQAVAATGRLSSQDPNLQNIPIKT---- 692

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G KLV AD + IE R++A ++ +   
Sbjct: 693 --------------------DEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGL 732

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF  G D++  T A+ F   +D V+ E R   K +   L Y       AK      + 
Sbjct: 733 LSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAFGLAKQLHVGRNE 792

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++ +       + +  +A++H     +                          A
Sbjct: 793 AQQYIDRYFERYPGVQRYMNNIRAQAHEQGYVETLFGRRLYLPDINAKNKNFQLAAERTA 852

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +   + GTA +++K A  A            + ++Q+  +L
Sbjct: 853 INAPMQGTAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDEL 893



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 603 QAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           Q  + DI+   M          G D  +++ VHDE+V E  ++    +  +C
Sbjct: 858 QGTAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDELVLEVAES---CLDEVC 906


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/601 (17%), Positives = 200/601 (33%), Gaps = 109/601 (18%)

Query: 5   FIDIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET S  P+    VG+    E  QA     A+ +   P +L     +  +   L  +
Sbjct: 338 SIDTETTSLNPMEAKLVGLSFCMELGQAAYIPLAHHYPGVPSQL----NREQVLQRLKPW 393

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LNFS 119
           L  +  + +  N  ++R +F    G+ +       T + +       S     LA  +  
Sbjct: 394 LESDEKLKIGQNLKYDRHVFANH-GVMLNGI-VHDTLLQSYVLESHLSHDLDSLASRHLG 451

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                 +E  GK      F +  I                   G Y   D +    L + 
Sbjct: 452 IQTISYDEVTGKGAKRIGFEQVEI----------------HRAGIYAAEDADIPLRLHRV 495

Query: 177 LIPL-----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P+              E  L  +   I   G  +D DL+      + Q+   L++   
Sbjct: 496 LYPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQQAH 555

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L      +   T  ++  LF    + ++  +   + S      + +LA D  L ++   
Sbjct: 556 SLAGHAF-NLNSTKQIQEILFGQHKLPVIKKTPKGVPST-DEEVLQRLASDYPLPKVLLD 613

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+   GR+         + TGR +      QN+P +      
Sbjct: 614 YRGLAKLKSTYIDKLPQMVNKQTGRVHTHYA-QAVAVTGRLASNDPNLQNIPVRT----- 667

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA +G  ++ AD + IE R++A I+G+   I
Sbjct: 668 -------------------PEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLI 708

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AF+ G+DI+  T A+ F  P+++V+ EQR   KV+   L Y       A       +  
Sbjct: 709 HAFSEGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMSEFGLATQLGIERTAA 768

Query: 456 GLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQ--------------------YPEFAV 494
              + ++       +   +   +    H +++                          A+
Sbjct: 769 RTFIDRYFARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNRQMGAERAAI 828

Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVA 544
              + GTA +++K A  + H          + ++Q+  +L              +  R+ 
Sbjct: 829 NAPMQGTAADIIKLAMISVHRWLAEAQLQSKLIMQVHDELVLEVLVDELPVIKENLPRLM 888

Query: 545 N 545
            
Sbjct: 889 E 889


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/585 (16%), Positives = 185/585 (31%), Gaps = 122/585 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLLQY- 60
           D ET S           Y E A +   ++A +                   +  D +   
Sbjct: 323 DTETTSLN---------YME-AKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVLAQ 372

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
               L D     V  N  ++  +     GI +    +  T + +      +       LA
Sbjct: 373 MKPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDY-DTMLESYVLDSTATRHDMDSLA 430

Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L +    T   +   GK      F +  +                +  G Y   D + T 
Sbjct: 431 LKYLGQNTIHFEDIAGKGAKQLTFNQVKV----------------EEAGPYAAEDADITL 474

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L P             D E  L  +   I  +G  +  +++ +    +    ++L
Sbjct: 475 RLHQALWPKLEELSSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLEEL 534

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
                +L      +      L   LF    + ++  +     S      + +LA D  L 
Sbjct: 535 KSAAYELAGQEF-NLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEE-VLVELALDYPLP 592

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +L     ++ KL     + L   V+   GR+  +      + TGR S      QN+P + 
Sbjct: 593 KLLLEYRSLSKLKSTYTDKLPGMVNPQTGRVHTSY-HQAVAATGRLSSSDPNLQNIPIRT 651

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G ++V AD + IE R++A ++ 
Sbjct: 652 ------------------------EEGRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSD 687

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AF  G+D++  T A+ F   +D+VS +QR   K +   L Y       AK    
Sbjct: 688 DPSLLTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSAFGLAKQLHL 747

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQY 489
                   + ++ +     + + D  +A                      + +       
Sbjct: 748 GRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINARNKMRVQAA 807

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDL 524
              A+   + G+A +++K+A  +  Q           ++Q+  +L
Sbjct: 808 ERTAINAPMQGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDEL 852



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655
           Q  + DI+   M +             +++ VHDE+V E  +    +V   +C LM+   
Sbjct: 817 QGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDELVLEVANDEVDAVSNQVCRLMSGAA 876

Query: 656 SWAKGLPLKA 665
             A  L ++A
Sbjct: 877 ELAVPLLVEA 886


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/548 (17%), Positives = 177/548 (32%), Gaps = 99/548 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L D  V+ +A N  ++ ++  +  G++I               G   +  +   
Sbjct: 466 DVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAPYDDTMLLSYVLDAGKGGNGMDELA 524

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                      +E    GKA++  F K  ID                    Y   D + T
Sbjct: 525 ERWLDHTPIPFKEVAGSGKAMVT-FDKVPIDKA----------------TAYAAEDADVT 567

Query: 171 RELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L++ L P              ER +  +   +  RG  +D  ++ +L    AQ    L
Sbjct: 568 LRLWRVLKPRLVAERMATVYETLERPMVPVLARMERRGISVDRQMLSRLSGDFAQGMAAL 627

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279
           + +I  L      +      L   LF   G+     ++ T     S S +  LA +   L
Sbjct: 628 EAEIHALAGESF-NIGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSVSVLDDLAAEGHEL 685

Query: 280 NRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                +   + KL     + L   +  + +   T     ++ TGR S      QN+P + 
Sbjct: 686 PSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT 745

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G+KL+ AD + IE RVLA +A 
Sbjct: 746 ------------------------EEGRKIRKAFVADKGRKLISADYSQIELRVLAHMAD 781

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
                +AFA+G DI+  T ++ F  PI+ +    R   K +   + Y     G A     
Sbjct: 782 IPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLAAQLGL 841

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                G  ++ + +       + +                     +    + +  ++  Y
Sbjct: 842 SRGEAGDYIKTYFERFPGIRDYMEAIKKEVHTKGYVTTVFGRKAHYPDVNTSNPSLRAFY 901

Query: 490 PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSIS 539
              A+   + G+A +++++A               + +LQ+  +L         E     
Sbjct: 902 ERAAINAPIQGSAADIIRRAMVRMDAALAAAKLDAEMLLQVHDELIFEVPEDQVEATIPV 961

Query: 540 ARRVANVP 547
            RRV    
Sbjct: 962 VRRVMETA 969


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/589 (18%), Positives = 193/589 (32%), Gaps = 96/589 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60
           ID ET S  P+    VG+    +         A     V   D   Q    A+ + +  +
Sbjct: 358 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQLSREAVLARMKLW 417

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L DET   V  +  ++  +F    GI +       T + +       +     LA     
Sbjct: 418 LEDETRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 475

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D        A     EY   D + T  L + L P 
Sbjct: 476 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 523

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         E    ++ Q +   G  +D + + +    + Q   +L++    L  
Sbjct: 524 VTEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLELEQQAFALAG 583

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F    + +V  +     S      + +LA+D  L +L      +
Sbjct: 584 QPF-NLNSPKQIGELFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDFRGL 641

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  T     A  TGR +      QN+P +          
Sbjct: 642 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 691

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G  +V AD + IE R++A ++ ++  ++AF 
Sbjct: 692 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLMRAFR 736

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+D++  T A+ F     +V+ EQR   KV+   L Y       A           L +
Sbjct: 737 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 796

Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498
            ++       + + D  +  +H            LW+          +      A+   +
Sbjct: 797 DRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 856

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            GTA +L+K +  A     +Q W +   G     + G  +  R V  V 
Sbjct: 857 QGTAADLIKLSMLA-----VQDWLE---GSPNAGKPGVPMRTRLVMQVH 897


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/541 (17%), Positives = 184/541 (34%), Gaps = 100/541 (18%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNGLPS 107
            +    + L   L + ++  +  N  ++  +F    + ++        T + +       
Sbjct: 422 NKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHHIQLNGVCFD---TMLQSYVLDSTG 478

Query: 108 SLKNACLALNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                 L+  +  H     E     GK  +  F K +I                    EY
Sbjct: 479 RHNMGALSERYLGHQVIEFESIAGKGKKQVT-FDKIAI----------------AQATEY 521

Query: 163 CKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
              D + T +L + L              +D E  L  +  T+   G  ID   +LK  E
Sbjct: 522 AAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSTMERNGVLIDSQALLKQSE 581

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            IA+    L++ + +        +  T  L+  LF    + ++  +     S  +   + 
Sbjct: 582 KIARRLTALEQQVYQEAGAEFNLA-STKQLQEILFTKLALPIIAKTPKGAPST-NEDVLE 639

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
            LA+   I+ +L      + KL     + L   V+   GR+  +      + TGR S   
Sbjct: 640 TLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSY-HQAVTATGRLSSSD 698

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                               C+R   IA  G K++ AD + I
Sbjct: 699 PNLQNIP------------------------IKNEEGRCIRQAFIARKGYKIIAADYSQI 734

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A ++ ++  I AF  G+DI+ +T A+ F  P+++V+ EQR   K +   L Y   
Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMS 794

Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------ 488
               +       ++    +  + Q      TF    + ++      +             
Sbjct: 795 SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEIN 854

Query: 489 ---------YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEG 535
                        A+   + GTA +++K A  A H  +    +Q+   + +     V+E 
Sbjct: 855 SSNAIRRKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELVFEVKEN 914

Query: 536 G 536
            
Sbjct: 915 K 915


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/601 (16%), Positives = 195/601 (32%), Gaps = 99/601 (16%)

Query: 2   SKLF-IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S LF  D ET S       L  +     A +A      + + D P +L        + + 
Sbjct: 353 STLFAFDTETDSLDTQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQL----SLDEVIAV 408

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLKNACLA 115
           +   L +E +  +  N  ++  +    L  DI  K     T + +      + +    + 
Sbjct: 409 MKPILENEKIGKIGQNLKYDAEVL---LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMD 465

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                HL         IA   K  +           +    +    Y   D + T  L +
Sbjct: 466 SLADRHLNHKTVSFEEIAGKGKKQLTF---------NQIPLEQAANYAAEDADVTLLLHQ 516

Query: 176 RLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P  +            E  L  +   +  +G  ID  ++    ++I     +L++  
Sbjct: 517 ALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITARLAELEKQA 576

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L       +     L+  LF    + ++  +     S  +   + +LA +  L +L  
Sbjct: 577 FDLAGEEFNLA-SPKQLQTILFEKLQLPVIKKTPSGAAST-NEEVLEELALNHALPKLLL 634

Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              ++ KL     + L   ++   +   T      + TGR S      QN+P +      
Sbjct: 635 EHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT----- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A +G K++ AD + IE R++A ++ +   +
Sbjct: 690 -------------------EEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLL 730

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AFA G+DI+  T A+ F  P+++V+ +QR   K +   L Y       A+         
Sbjct: 731 TAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 790

Query: 456 GLDLQQFSQNVKSTSTFEDWEQ---------------------AESHHLWMQDQYPEFAV 494
              +  + +       + +  +                      +S +   +      A+
Sbjct: 791 QRYMDLYFERYPGVLRYMENTRLQASERGYVETLEGRRLYLADIKSSNGMRRKAAEREAI 850

Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVA 544
              + GTA +++KKA  A              ++Q+  +L         E      + + 
Sbjct: 851 NAPMQGTAADIIKKAMIAVDNWLETEKPSADMLMQVHDELVFEVKESELEKVQAKVQELM 910

Query: 545 N 545
            
Sbjct: 911 E 911


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/517 (18%), Positives = 179/517 (34%), Gaps = 86/517 (16%)

Query: 49  EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            ++ +P D     L   L D +V+ VA N  ++ ++ K+  GI I               
Sbjct: 451 AENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKRH-GIVIRGFDDTMLLSYVLEA 509

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           G+ +   ++             +E    +A   K  +     D  +A           Y 
Sbjct: 510 GVGAHGMDSLSERWLGHTPIPYKE----VAGSGKSLVTFDLVDIDKATA---------YA 556

Query: 164 KRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             D + T  L+  L P              ER L  +   + +RG  ID  ++ +L   +
Sbjct: 557 AEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLADMEERGITIDRQILSRLSGEL 616

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           AQ+    +++I +L      +      L   LF    +     ++ T +   S   +  L
Sbjct: 617 AQKAAAFEDEIYELAGERF-NVGSPKQLGDILFGRMNLPGGSKTK-TGQWSTSAQVLEDL 674

Query: 274 AKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           A     L R       + KL     + L   V    +   T     A+ TGR S      
Sbjct: 675 AAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSMAATTTGRLSSSEPNL 734

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R+  I++ G KL+ AD + IE R
Sbjct: 735 QNIPVRT------------------------AEGRKIRTAFISTPGHKLLSADYSQIELR 770

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443
           VLA +A      +AFA+G DI+  T ++ F  P+D +  E R   K +   + Y     G
Sbjct: 771 VLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAFG 830

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
            A       +  G  ++++ +       + +                     + + +S +
Sbjct: 831 LANQLSIERAEAGEYIKKYFERFPGIKDYMESTKAFVREHGYVETIFGRRAHYPEIKSSN 890

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             M+      A+   + G+A +++++A       + +
Sbjct: 891 PSMRAFNERAAINAPIQGSAADVIRRAMVQVEPALAK 927


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 101/582 (17%), Positives = 200/582 (34%), Gaps = 99/582 (17%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VG+ +A AE +A     A+ + D P +L    ++  + + L   L 
Sbjct: 357 DTETTSLNYIQAELVGLSFAVAEGEAAYLPVAHDYIDAPEQL----DRDHVLASLKTLLE 412

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121
           D     V  N  +++ +     GI++    +  T + +   N + +      LA  +  H
Sbjct: 413 DSNAKKVGQNLKYDKSVLANY-GINLAGIAY-DTMIESYVYNSIATRHDMDSLADKYLGH 470

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
            T   E            I          N ++  +    Y   D + T  L   L P  
Sbjct: 471 KTISFE-----------EIAGKGKKQLTFNQIEL-EQASAYAAEDADVTLRLHNVLWPKI 518

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                     ++ E  L  +  ++  +G  ID   +      +     +L+    ++ + 
Sbjct: 519 EAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARMLELEAKAHEIAEQ 578

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S     L+  LF+   + ++  +     S  +   + +LA +  L ++     ++ 
Sbjct: 579 PFNLS-SPKQLQEILFVKMELPVIKKTPKGAAST-AEDVLQELALNYPLPKIILEYRSLS 636

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   +    GR+  +      + TGR S      QN+P             
Sbjct: 637 KLKSTYTDKLPTLIEEKTGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------- 682

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             +  GE            +R   I   G K V  D + IE R++A ++ +   + AF+ 
Sbjct: 683 --VRAGE---------GRRIRQAFIPETGYKYVAVDYSQIELRIMAHLSQDKGLLTAFSE 731

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
           G+DI+  T A+ F+  +D V+ +QR   K +   L Y   A    +            + 
Sbjct: 732 GKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIYGMSAFGLGRQLNIPQKEAKKYMT 791

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++ +      T+ D                       +  + +   Q      A+   + 
Sbjct: 792 RYFERYPGVLTYMDETRKVAKDKGYVETLSGRRLYLPEINARNKMSQMAAERAAINAPMQ 851

Query: 500 GTACELVKKAWRA-------KHQGVLQLWKDLTEGFACVVQE 534
           GTA +++KKA               +++   + +     ++E
Sbjct: 852 GTASDIIKKAMINVAGWMETVETNSIRMLMQVHDELVFEIKE 893



 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           Q  + DI+ + M N          N   +++ VHDE+V E  +    + V  +  LM   
Sbjct: 851 QGTASDIIKKAMINVAGWMETVETNSIRMLMQVHDELVFEIKEEHVEAYVVKIKELMAAA 910

Query: 655 PSWAKGLPLKAE 666
            S    +PL AE
Sbjct: 911 MS--LDVPLLAE 920


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 100/589 (16%), Positives = 194/589 (32%), Gaps = 121/589 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
           +  D ET S            A+QA +   ++A  +                  +  D  
Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
              L   L D   + V  ++ ++  +                T + +      +      
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            LAL +  H T   +   GK      F + +I                +  G Y   D +
Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487

Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L             L+D E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276
             L+     L      +      L   L+   G+ ++  +  T +   + + + +LA+ D
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605

Query: 277 LILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L ++     ++ KL +     L E ++   GR+  +      + TGR S      QN+
Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G KL+ AD + IE R++A
Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            +A +D  + AF +  D++  T A+ F  P++ V+ +QR   K +   L Y       AK
Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINFGLIYGMSAFGLAK 760

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
                       + ++         + +  +A++                      +  M
Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +      A+   + GTA +++K+A  A            + +LQ+  +L
Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDEL 869


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 97/579 (16%), Positives = 188/579 (32%), Gaps = 110/579 (18%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L    V   +++A      + +   P ++    ++  +       L 
Sbjct: 383 DTETTSLNYMNAELVGFAVAV-SDKAAYIPFGHNYPGAPDQI----DKQLVIDKFKPLLE 437

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           D+++  +  N  ++  +  +  GI +    +  T + +     + +      LAL +   
Sbjct: 438 DDSLKKIGQNLKYDMSVLAEDAGITLRGVAF-DTMLESYVLDSVATRHDMDSLALKYLGR 496

Query: 122 LT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T       GK      F +  +                     Y   D + T  L + L
Sbjct: 497 KTISFTDIAGKGAKQLTFNQIGL----------------HEASPYAAEDADVTLRLHQTL 540

Query: 178 IPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P             D E  L  +   I   G  +D  L+    + +A+   +L E    
Sbjct: 541 WPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEKAFD 600

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +       +     L   L+    I ++  +     S  + + + +LA D  L ++    
Sbjct: 601 IAGQEFNLA-SPKQLGEILYEKLEIPVIKKTPKGAPST-AEAVLQELAHDYPLPQVIMDY 658

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L E ++   GR+  +      + TGR S      QN+P +       
Sbjct: 659 RGVAKLKNTYTDKLPELINQRTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS------ 711

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  GKK+V  D + IE R++A ++G+     
Sbjct: 712 ------------------EEGRKIRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTD 753

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF  G DI+  T A+ +   +D+VS   R   K +   L Y       AK          
Sbjct: 754 AFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQ 813

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495
             +  + +       + +  +A +                      +   +      A+ 
Sbjct: 814 EYIDLYFERYPGVKKYMEDTRALAIDKGYVETVYGRRLYLPEIHSKNGQRRQGAERAAIN 873

Query: 496 DKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
             + GTA +++KKA    H          + ++Q+  +L
Sbjct: 874 APMQGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDEL 912


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 102/605 (16%), Positives = 197/605 (32%), Gaps = 105/605 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID+ET S       +  V +     QA     A+     P +L    ++  +   L   
Sbjct: 328 SIDLETNSLNYMDAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQL----DRDRVLDALRPL 383

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L  E    +  N  ++  +  +  GI++    +  + + +        L +     +   
Sbjct: 384 LEAEQPEKMGQNLKYDMSVLARY-GIELRGVAY-DSMLESYV------LDSTATRHDMDS 435

Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             +K   G  + +    C   +   P+           +  G Y   D +    L + L 
Sbjct: 436 LASKYL-GVEVTSYEQLCGKGVRQVPFAEIDV------ERAGHYAAEDADIALRLHQLLY 488

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P            S  E  L  +   +   G R+D DL+ +  E +A    ++++   + 
Sbjct: 489 PRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMAEVEQRAHEE 548

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      ++   F   G+ ++  +     S          A+   L RL     
Sbjct: 549 AGEAF-NLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHELPRLILEHR 607

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + +  D GR+  +      + TGR S      QN+P +        
Sbjct: 608 GLSKLKSTYTDKLPQLIHRDTGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRT------- 659

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +AS G +L+ AD + +E R++A ++G++   +A
Sbjct: 660 -----------------PEGRRIRKAFVASPGHRLITADYSQVELRIMAHLSGDEGLRRA 702

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457
           F  GEDI+  T A+ F    D+V+ EQR   K +   L Y   A    +           
Sbjct: 703 FEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINFGLIYGMSAWGLGRQLGIPRDEAQT 760

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            + ++ +       F D                       +  S +   ++     A+  
Sbjct: 761 YIDRYFERYPGVRAFMDRAREQAREQGYVETVFGRRLHVPEIHSRNRQRREYAERTAINA 820

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            + GTA +++K+A               + V+Q+  +L                RR+   
Sbjct: 821 PMQGTAADVIKRAMIDVDALLNERFPESRLVMQVHDELVLEVPEAQATAVGDEVRRLMEG 880

Query: 547 PRLVM 551
               M
Sbjct: 881 SDRGM 885


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/541 (17%), Positives = 183/541 (33%), Gaps = 100/541 (18%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNGLPS 107
            +    + L   L + ++  V  N  ++  +F    + ++        T + +       
Sbjct: 422 NKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHHIQLNGVCFD---TMLQSYVLDSTG 478

Query: 108 SLKNACLALNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                 L+  +  H     E     GK  +  F K +I                    EY
Sbjct: 479 RHNMGALSERYLGHQVIEFESIAGKGKKQVT-FDKIAI----------------AQATEY 521

Query: 163 CKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
              D + T +L + L              +D E  L  +   +   G  ID   +LK  E
Sbjct: 522 AAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSKMERNGVLIDSQALLKQSE 581

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            IA+    L++ + +        +  T  L+  LF    + ++  +     S  +   + 
Sbjct: 582 KIARRLTALEQQVYQEAGAEFNLA-STKQLQEILFTKLALPIIAKTPKGAPST-NEDVLE 639

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
            LA+   I+ +L      + KL     + L   V+   GR+  +      + TGR S   
Sbjct: 640 TLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSY-HQAVTATGRLSSSD 698

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                               C+R   IA  G K++ AD + I
Sbjct: 699 PNLQNIP------------------------IKNEEGHCIRQAFIARKGYKIIAADYSQI 734

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A ++ ++  I AF  G+DI+ +T A+ F  P+++V+ EQR   K +   L Y   
Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMS 794

Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------ 488
               +       ++    +  + Q      TF    + ++      +             
Sbjct: 795 SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEIN 854

Query: 489 ---------YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEG 535
                        A+   + GTA +++K A  A H  +    +Q+   + +     V+E 
Sbjct: 855 SSNAIRRKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELVFEVKEN 914

Query: 536 G 536
            
Sbjct: 915 K 915


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 95/572 (16%), Positives = 184/572 (32%), Gaps = 103/572 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ ++  PV+L    ++ A+   L   L D     V  N+ ++  +        
Sbjct: 364 AAYVPLAHDYEGAPVQL----DREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
                   T + +      +       LA  + +H T   E   GK      F + ++D 
Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDK 479

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
                            G Y   D + T  L   L             L D E  L  + 
Sbjct: 480 A----------------GPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVL 523

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +  +L+    +L      +      L   L+   G+
Sbjct: 524 ARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETF-NLGSPKQLGTILYDKLGM 582

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S           +   L  +     ++ KL     + L   ++   GR+
Sbjct: 583 PVLSKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRI 642

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             + Q    + TGR S      QN+P +                              +R
Sbjct: 643 HTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRIR 677

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 678 QAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVT 737

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            +QR   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 738 TDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAA 797

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++K+A           
Sbjct: 798 EQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSES 857

Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARR 542
               + +LQ+  +L       + +      R+
Sbjct: 858 GLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+      L        R            +Q  + DI+   M    
Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVKVD 851

Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
                      ++L VHDE+V E  +     V   +   M++ 
Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQA 894


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/555 (18%), Positives = 193/555 (34%), Gaps = 92/555 (16%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S       L  +     A +A     A+ + D P +L     Q+   + L   
Sbjct: 357 AVDTETTSLNYMEAKLVGLSFAVEAGKAAYLPLAHDYLDAPQQL----NQAEALAKLKPL 412

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFS 119
           L +  +  V  N  ++  +    +GI +    +  T + +   N + S      LAL + 
Sbjct: 413 LENPEIKKVGQNLKYDMSILAN-VGIKLQGIAF-DTMLESYVFNSVASKHNMDDLALKYL 470

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            H     E            I          N +   ++   Y   D + T  L + L P
Sbjct: 471 GHKNISFE-----------EIAGKGAKQLTFNQISL-EVAAPYAAEDADITLRLHQHLWP 518

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                       ++ E  L  +   +  +G  ID  L+ +  E +A+   +L++   ++ 
Sbjct: 519 RLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTIDELEQKAYEIA 578

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S     L++  F   G  ++  +     S      + +LA D  L ++     +
Sbjct: 579 GESFNLS-SPKQLQVLFFEKLGYPIIKKTPKGAPSTAEE-VLVELALDYPLPKIILQHRS 636

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   V++  GR+  +     A+ TGR S      QN+P +         
Sbjct: 637 LAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT-------- 687

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+K++ AD + IE R++A ++ +   + AF
Sbjct: 688 ----------------EEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLSQDKGLLTAF 731

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           A G+DI+  T A+ F+    +V+ EQR   K +   L Y       A+            
Sbjct: 732 AEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQKY 791

Query: 459 LQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDK 497
           +  + +       + +  +A +                      +   +      A+   
Sbjct: 792 IDTYFKRYPGVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAP 851

Query: 498 LIGTACELVKKAWRA 512
           + GTA +++KKA   
Sbjct: 852 MQGTAADIIKKAMIN 866



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M N        T     +++ VHDE+V E       ++   +C LM + 
Sbjct: 853 QGTAADIIKKAMINVADWIANETDGEITLIMQVHDELVFEVDSDKAEALQEKVCQLMAEA 912


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/572 (17%), Positives = 190/572 (33%), Gaps = 99/572 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S       +  V       +A      + +   P +L    ++ A+ + L   
Sbjct: 324 SFDTETTSLNYMQAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQL----DRDAVLNALKPL 379

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFS 119
           L D     V  +  +++ +  +  GI++       T + +     +        LA  + 
Sbjct: 380 LEDTGKAKVGQHLKYDKNVLARY-GIELKGIA-HDTMLASYVLNSVAGRHDMDSLAERYL 437

Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +  T   +   GK      F +  +                +    Y   D + T +L +
Sbjct: 438 DRHTVHYEDIAGKGAKQLTFNQIDL----------------EQAAPYAAEDADITLQLHR 481

Query: 176 RLIPLSDGERDLWLLDQ-----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P    E  L  + Q            I   G ++D D +    + +A+  ++ +E  
Sbjct: 482 ELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMRQAEEAA 541

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +      L+  LF   G+ +V  +     S          A+   L +   
Sbjct: 542 HNEAGESF-NLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHPLPQWIL 600

Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              A+ KL     + L + +    GR+  +      + TGR S      QN+P +     
Sbjct: 601 RYRALSKLKSTYTDKLPQLIDSKTGRVHTSY-HQAVAATGRLSSSDPNLQNIPIRS---- 655

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  G K++ AD + IE R++A ++G++  
Sbjct: 656 --------------------EEGRRIREAFVAEPGHKILAADYSQIELRIMAHLSGDETL 695

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           I+AF  G DI+  T ++ F  P+D+V  EQR   K +   L Y       AK        
Sbjct: 696 IRAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVNFGLIYGMSAFGLAKQLGISRGE 755

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  + +       + +                       + +S ++  +      A
Sbjct: 756 AQGYVDTYFERYPGVRDYMERTREQAREQGYVETEFGRRLYLPEIQSRNVPRRQHAERTA 815

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +   + GTA +++K+A  A H  + +   D+ 
Sbjct: 816 INAPMQGTAADIIKRAMIAIHDALEKELPDVR 847



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           Q  + DI+   M               +V+ VHDE+V E P+        L  
Sbjct: 821 QGTAADIIKRAMIAIHDALEKELPDVRMVMQVHDELVFEVPEDQAKQTQALVE 873


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 103/589 (17%), Positives = 193/589 (32%), Gaps = 82/589 (13%)

Query: 2   SKLFIDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             + ID ET S   +    VGV    E          + +   P ++    +     S L
Sbjct: 354 KCIAIDTETDSLDYMVAHLVGVSFALENGEAAYLPLRHDYLGAPQQV----DFQTALSLL 409

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L +  +  V  N  ++  +F +  GI++    +  T +L+             LA  
Sbjct: 410 KPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNMDELAKR 467

Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +  H T   +   GK      F +  ++           +       +     V A  EL
Sbjct: 468 YLGHQTIHFEDIAGKGKAQLTFNQIPLEQAAEYAAEDADITM--KLQQVLWEKVAAQPEL 525

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            K        E  L  +   I   G  ID D +    + I      L++   +L      
Sbjct: 526 VKL---YQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRLTALEQQAYELAGQQFN 582

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
            +  T  L+  LF    + ++  +     S  +   + +LA +  L ++      + KL 
Sbjct: 583 LA-STKQLQEILFDKLSLPVLKKTPKGAPST-NEEVLEELAYEHALPKILVEHRGLSKLK 640

Query: 293 ----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L   V+ D GR+  +      + TGR S      QN+P +              
Sbjct: 641 STYTDKLPLMVNKDTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-------------- 685

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   IA  G +++ AD + IE R++A ++ +   I AF  G+D
Sbjct: 686 ----------NEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHLSQDKGLINAFNEGKD 735

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFS 463
           I+ +T A+ F  P+ +VS EQR   K +   L Y       ++            +  + 
Sbjct: 736 IHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRHEAQKYMDLYF 795

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           Q       F                           +S +   +      A+   + GTA
Sbjct: 796 QRYPGVQAFMHDIRETAKAQGYVTTLFDRRLYLPDIQSSNAIRRKAAERVAINAPMQGTA 855

Query: 503 CELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISARRVANV 546
            +++K+A     + +     +++   + +     V+       R +   
Sbjct: 856 ADIIKRAMITLDREIAGQPDIKMIMQVHDELVFEVRTDKIEHFRTIIKT 904


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 106/598 (17%), Positives = 198/598 (33%), Gaps = 106/598 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S       L  +      E+ V    A+ + D P +L     +  +   L   
Sbjct: 323 SFDTETTSLNVMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQL----NRQWVLQQLKPL 378

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFS 119
             D   + + H+  ++  +     GI +    +  T + +       +       AL   
Sbjct: 379 FEDPKQIKIGHHLKYDMNILAHY-GIQLRGIDF-DTMLESYLLDSASNQHSLDSAALKHL 436

Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +H T   E   GK    + F + ++                Q  G Y   D      L +
Sbjct: 437 DHKTIRFEEIAGKGAKQKTFNQINL----------------QDAGPYAAEDAAIALRLHE 480

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P            ++ E  L  +   +   G  ID  L+ K    IA+    L++  
Sbjct: 481 TLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQQA 540

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      L+  LF   G+ +++ +    ++  S + +  LA    L ++  
Sbjct: 541 FQLAGKPF-NLGSPKQLQTILFDDHGLPILEKTPKG-QASTSENVLQALALTFPLPKIIL 598

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L E ++   GR+  +     A  TGR S      QN+P +     
Sbjct: 599 KHRRLSKLKSTYTDKLPEQINPKTGRVHTSY-HQAAVVTGRLSSSDPNLQNIPART---- 653

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G  ++ AD + IE R++A  + +   
Sbjct: 654 --------------------HEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGL 693

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +KAFA G DI+  T A+  N P+++V+ EQR   K +   L Y       A+        
Sbjct: 694 LKAFAQGLDIHQATAAEVLNIPLERVTHEQRRSAKAINFGLMYGMSAFGLARQLGISRED 753

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFA 493
               ++++         + +  +  +H                                A
Sbjct: 754 AKNYIERYFDRYPGVKRYMERIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRASERAA 813

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKD------LTEGFACVVQEGGSISARRVAN 545
           +   L G+A +++KKA       +++   D      + +     + E     A+R+  
Sbjct: 814 INAPLQGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRAKRLIE 871



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 9/128 (7%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + +E       R  +    V R  +R                 + + +++N+  S   R 
Sbjct: 749 ISREDAKNYIERYFDRYPGVKRYMERIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRA 808

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DI+ + M               +++ VHDE+V E  +      
Sbjct: 809 SERAA--INAPLQGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRA 866

Query: 645 GTLCS-LM 651
             L   LM
Sbjct: 867 KRLIENLM 874


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 99/588 (16%), Positives = 189/588 (32%), Gaps = 103/588 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + + + P +L     +  + +     L D   + V  N  F++ L     GI 
Sbjct: 408 AAYLPLGHDYPEAPAQL----NRDKVLALFKPLLEDPQALKVGQNLKFDQSLLANY-GIK 462

Query: 88  IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
           +    +  T + +   N +        L+     H T   E   GK      F +  +  
Sbjct: 463 LQGIAF-DTMLESYVFNSVAGRHDMDSLSERHLNHKTLSFEDIAGKGKNQLTFNQIPL-- 519

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +    Y   D + T  L   L P           L + E  L  + 
Sbjct: 520 --------------EQAAIYAAEDADVTLRLHLALWPKLKENPDLMKVLQEIEMPLLSVL 565

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  ID D++L   + +     +L++    +      +   T  L+  L+    +
Sbjct: 566 SRMERTGVMIDPDILLNHSKELQLRLTELEKKAHDIAGETF-NLNSTQQLQTILYEKQTL 624

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S  + + + +LA D  L ++     ++ KL     + L   +    GR+
Sbjct: 625 PVLKKTPKGAPST-NEAVLAELALDYPLPKIILEHRSLTKLKTTYTDKLPLMIHPLSGRV 683

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 684 HTSY-HQAVTSTGRLSSRDPNLQNIP------------------------VRNEEGRRIR 718

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G ++V AD + IE R++A ++ +   + AF+ G+DI++ T A+ F  P+ +VS
Sbjct: 719 HAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNAFSEGQDIHLITAAEVFGLPVSQVS 778

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480
            +QR   K +   L Y       A+            +  +  +      +    + E+ 
Sbjct: 779 AQQRRSAKAINFGLIYGMSAFGLARQLNVSRFEAERYMNLYFTHYPKVLDYMQRTREEAV 838

Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                +   +      A+   + GTA +++K+A           
Sbjct: 839 KNGYVTTLEGRRLYLADIHSKNANRRKAAEREAINAPMQGTAADIIKRAMIHID-----F 893

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           W    E      Q+       +V +   LV   H   +       R L
Sbjct: 894 WLQQEEQKLAPKQKSRVNLIMQVHD--ELVFEVHDSVLKSATDKIREL 939


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 108/577 (18%), Positives = 190/577 (32%), Gaps = 98/577 (16%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVK-LWDRTE--QSAMPSDLLQ 59
            ID ET S  P+    VG+   A          A     V  L +  +  +  +   +  
Sbjct: 360 AIDTETTSLDPMQAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQLSREFVLERMRA 419

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           +L D +   +  N  ++  +F    GI +       T + +       +     LA    
Sbjct: 420 WLEDASRPKLGQNLKYDIHVFANH-GIKLRGVA-HDTMLQSYVLASHRNHGMDSLAERLL 477

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              T   E        C        +D              EY   D + T  L +R+ P
Sbjct: 478 SLKTITYE------EVCGKGASQIGFDQID------LARATEYAAEDADVTLRLHRRMFP 525

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        + E  + ++ Q +   G  ID + +      + Q    L++   +  
Sbjct: 526 QVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQSAYEAA 585

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      +   LF    + +V  +     S      + +LA+D  L +L      
Sbjct: 586 GQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 643

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L + V+   GR+  +     A  TGR +      QN+P +         
Sbjct: 644 LSKLKSTYTDKLPKMVNPRTGRVHTSYGQATAV-TGRLASTEPNLQNIPVRT-------- 694

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G  +V AD + IE R++A I+G++  ++AF
Sbjct: 695 ----------------DEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAF 738

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANGEDI+  T A+ F    D VS EQR   KV+   L Y       A             
Sbjct: 739 ANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIERDAARHY 798

Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497
           + ++       + + +            E      LW+          +      A+   
Sbjct: 799 IDRYFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAP 858

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           + GTA +L+K +  A          + + ++Q+  +L
Sbjct: 859 MQGTAADLIKLSMIAVQDWLERDGLQTRQIMQVHDEL 895


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 105/599 (17%), Positives = 200/599 (33%), Gaps = 111/599 (18%)

Query: 7   DIETRSPQPLPK---VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           D ET S     K   VG+    E  +A     A+ ++  PV+L    ++ A+   L   L
Sbjct: 339 DTETTS-LDAQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQL----DREAVLLALKPLL 393

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
           +D     V  N+ ++  +                T + +      +       LA  + +
Sbjct: 394 QDPAKEKVGQNAKYDINILANGSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQKYLD 453

Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H T   E   GK      F +  +D                  G Y   D + T  L + 
Sbjct: 454 HATIAFEDIAGKGAKQLTFNQIHLDKA----------------GPYAAEDADITLRLHQA 497

Query: 177 L----------IPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L          +P+  D E  L  +   I  +G  +D  L+      +  +   L+    
Sbjct: 498 LQARLAQTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKMADLERRAY 557

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284
           +L      +      L   L+   G+ ++  +     S  + + + +LA+    L  +  
Sbjct: 558 ELAGEEF-NLGSPKQLGSILYDKLGMPVLSKTAKGQPST-AEAVLDELAEQGYPLPEVLM 615

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L   ++   GR+  + Q    + TGR S      QN+P +     
Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQ-QAVAATGRLSSSDPNLQNIPIRT---- 670

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IAS G KL+ AD + IE R++A +A ++  
Sbjct: 671 --------------------AEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF N  D++  T A+ F   ++ V+ +QR   K +   L Y       AK        
Sbjct: 711 LHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFA 493
               + ++         + +  +A+                     + +  ++      A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARR 542
           +   + GTA +++K+A               + +LQ+  +L       + +      R 
Sbjct: 831 INAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVDQVKDEIRG 889



 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+      L        R            +Q  + DI+   M N  
Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVNVD 851

Query: 619 K----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
                +G D  ++L VHDE+V E  +     V   +   M+K 
Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVDQVKDEIRGQMSKA 894


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 109/593 (18%), Positives = 203/593 (34%), Gaps = 111/593 (18%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  V +     +AV     + + + P ++     +  +   L   L 
Sbjct: 345 DTETTSLNYMEAELVGVSLAMAPGEAVYIPVGHDYMEAPDQVG----RDWLLEQLKPLLE 400

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120
            E    V  N  ++  + ++     I     +  ++LA    N + S      L+L++  
Sbjct: 401 AEKPQKVGQNLKYDSHILRRY---KIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLN 457

Query: 121 HLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H T   +   GK      F + ++                +  G Y   D + T  L   
Sbjct: 458 HKTISFEDIAGKGAKQLTFNQIAL----------------EQAGPYAAEDADITYRLHDV 501

Query: 177 LIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           L              L+D E  L  +   +   G RID +L+ K  + IA++   L++  
Sbjct: 502 LWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEKLDALEKKA 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++      +      L+   F    + +V  +     S      + +LA D  L  +  
Sbjct: 562 FEIAGEEF-NLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEE-VLHELAHDYPLPDVIL 619

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++ D GR+  + Q    + TGR S      QN+P +     
Sbjct: 620 QHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQ-QAVTATGRLSSTDPNLQNIPIRT---- 674

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   I   G K+V  D + IE R++A ++ ++  
Sbjct: 675 --------------------AEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESL 714

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +KAFA G DI+  T A+ F    D+VS +QR   K +   L Y       A+        
Sbjct: 715 LKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAFGLARQLGIARHE 774

Query: 455 CGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFA 493
               + ++ +         ED  +      +++  +                       A
Sbjct: 775 AQHYMDKYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRRLPLPDIKASNGARRKGAERAA 834

Query: 494 VKDKLIGTACELVKKA------WRAKH--QGVLQLWKDLTEGFACVVQEGGSI 538
           +   + GTA +++KKA      W   +  Q  +++   + +     ++E    
Sbjct: 835 INAPMQGTAADIIKKAMLKVADWIDSNNCQDDVRMLMQVHDELVFEIKESKLT 887


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 101/581 (17%), Positives = 198/581 (34%), Gaps = 97/581 (16%)

Query: 7   DIETRSPQPLPKVGVWAYAEQ----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   L    V          A     A+ + D P +L    ++  + + L   L 
Sbjct: 356 DTETDSLDVLSANLVGISCADKPGQACYIPLAHDYLDAPHQL----DRQYVLARLQPLLE 411

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           DE +  +  N  ++  +  +  GI +    +  T + +     +        L+    +H
Sbjct: 412 DEGIAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMDSLSARHLDH 469

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            T   E  A   +  + + +  P            +   EY   D + T +L + L P+ 
Sbjct: 470 KTITFEEIAGKGK-GQLTFNQIP-----------LEQASEYAAEDADVTLQLHQHLWPML 517

Query: 182 DGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +GE             L  +   +   G  ID  ++ +  + +A   + L++        
Sbjct: 518 EGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAHSEAGE 577

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S  T  L+  LF    + ++  + G   S      +    +   L ++      + 
Sbjct: 578 PFNLS-STKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYALPQVILEYRTLA 636

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   V+   GR+  +      + TGR S      QN+P +           
Sbjct: 637 KLKSTYTDKLPLMVNPLTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS---------- 685

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G ++V AD + IE R++A ++G+   ++AFA 
Sbjct: 686 --------------DEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLSGDKGLLQAFAA 731

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G+DI+  T A+ F  P++ VS +QR   K +   L Y       A+            + 
Sbjct: 732 GKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRYMD 791

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                       +  + +   +      A+   + 
Sbjct: 792 LYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAPMQ 851

Query: 500 GTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
           GTA +++K+A      W  + Q  +++   + +     V E
Sbjct: 852 GTAADIIKRAMIAVDGWLQETQLEVRMIMQVHDELVFEVPE 892



 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644
           Q  + DI+   M          +    +++ VHDE+V E P++   +V
Sbjct: 851 QGTAADIIKRAMIAVDGWLQETQLEVRMIMQVHDELVFEVPESQVEAV 898


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/573 (16%), Positives = 189/573 (32%), Gaps = 105/573 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ ++  P +L    ++ A+   L   L D     +  N+ ++  +        
Sbjct: 371 AAYVPLAHDYEGAPAQL----DREAVLLALKPLLEDPAKGKIGQNAKYDINILANGSPAI 426

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDS 142
           +       T + +      +       LA  + +H T   +   GK      F +  ++ 
Sbjct: 427 LMRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHTTIGFEDIAGKGAKQLTFNQIPLEK 486

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL----------IPLS-DGERDLWLLD 191
                            G Y   D + T  L   L          +P+  D E  L  + 
Sbjct: 487 A----------------GPYAAEDADVTLRLHHALQARLANTPSVLPVLMDIEMPLVPVL 530

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D  L+      +  +  +L+ +   L      +      L   L+   G+
Sbjct: 531 AKIERQGALVDAALLGVQSGELGAKLVELEREAYALAGEEF-NLGSPKQLGAILYDKLGM 589

Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
            ++  +     S  + + +  LA+    L ++     ++ KL     + L   ++   GR
Sbjct: 590 PVLSKTAKGQPST-AEAVLDDLAEQGYPLPKVLMQYRSLSKLKSTYTDKLPGQINPRTGR 648

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  + Q    + TGR S      QN+P +                              +
Sbjct: 649 IHTSYQ-QAVAATGRLSSSDPNLQNIPVRT------------------------AEGRRI 683

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +AS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   +  V
Sbjct: 684 RQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALADV 743

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + +QR   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 744 TTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQA 803

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++K+A  A       
Sbjct: 804 AEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVAVDNWLTD 863

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARR 542
                + +LQ+  +L       + E      R 
Sbjct: 864 SKLDARVILQVHDELVLEVREDLVEQVKDEIRG 896



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+      L        R            +Q  + DI+   M    
Sbjct: 808 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVAVD 858

Query: 619 ------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                 K    ++L VHDE+V E  +     V   +   M+
Sbjct: 859 NWLTDSKLDARVILQVHDELVLEVREDLVEQVKDEIRGYMS 899


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/607 (16%), Positives = 200/607 (32%), Gaps = 112/607 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVW-AYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDL 57
                D ET S   L    V  ++A    +       + + D P +L    ++  + + L
Sbjct: 353 KIFAFDTETDSLDVLTTNLVGLSFATAPSVAAYIPVGHDYLDAPDQL----DRDDVLAKL 408

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLAL 116
              L D  ++ V  N  +++ +  +  GI++    +  T + +     +        LA 
Sbjct: 409 KPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIAF-DTMLESYDLDSVAGRHDMDSLAE 466

Query: 117 NFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               H T   E     GK+ +  F + ++                +    Y   D + T 
Sbjct: 467 RHLNHKTITFEEIAGKGKSQLT-FNQIAL----------------EQATPYAAEDADVTL 509

Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  +L P  + E             L  +   +   G  ID +++ K  + +A    +L
Sbjct: 510 QLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIRLDEL 569

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   +        S     L+  LF    + +V  + G   S           +   L 
Sbjct: 570 EKKAHEAAGEPFNLS-SPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQGFELP 628

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +      + KL     + L + ++   GR+  +      + TGR S      QN+P   
Sbjct: 629 TIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSY-HQAVTATGRLSSSDPNLQNIP--- 684

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G K+V AD + IE R++A ++G
Sbjct: 685 ---------------------VRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSG 723

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AFA G+DI+  T A+ F   ++ V+ EQR   K +   L Y       A+    
Sbjct: 724 DKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 783

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQY 489
                   +  + +       + +  + ++                      +   +   
Sbjct: 784 ARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYLPEIHSRNGMRRKGA 843

Query: 490 PEFAVKDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSI 538
              A+   + GTA +++K+A  +             + ++Q+  +L       V E    
Sbjct: 844 ERAAINAPMQGTAADIIKRAMISVDAWLLQQKEPLVRMIMQVHDELVFEVHESVIEQTVE 903

Query: 539 SARRVAN 545
             R +  
Sbjct: 904 KVRELME 910


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/579 (17%), Positives = 196/579 (33%), Gaps = 108/579 (18%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYA---WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
              PL   G    A+   + L   +    D+    L ++  ++   + L   L +  +  
Sbjct: 386 CYIPLAHKG--KIAQPTQVDLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRK 443

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----- 123
           +  N  ++  +F +  GI++    +  T + + T           LA  +  H T     
Sbjct: 444 IGQNIKYDLTIFARY-GIELQGVAF-DTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEE 501

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179
              +GK  +  F +  +D                   EY   D E T +L + L      
Sbjct: 502 LAGKGKHQLT-FDQIELDKA----------------TEYAGEDAEITMKLHQLLWSELQK 544

Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   +   G  ID   +L     I Q  K+L+  + +    + 
Sbjct: 545 TPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVF 604

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291
             +  T  L+  LF   G+ ++  +     S  +   + +LA+    +  L      + K
Sbjct: 605 NLA-STKQLQEILFNKLGLPILKKTPKGAPST-NEEVLEELAQMGHQVPVLLMEHRGLSK 662

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + +++  GR+  +      + TGR S      QN+P +            
Sbjct: 663 LKSTYTDKLPQMINAQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------------ 709

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA +G  ++ AD + IE R++A +A +   IKAFA G
Sbjct: 710 ------------NEQGRRIRQAFIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEG 757

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
           +DI+ +T A+ F  P++ V+ EQR   K +   L Y       A       +     ++ 
Sbjct: 758 KDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEFGLANQLGISRTDAKKYMEL 817

Query: 462 FSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIG 500
           + Q   +   F                         +  S +   +      A+   + G
Sbjct: 818 YFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPEINSSNQMRRKAAERVAINAPMQG 877

Query: 501 TACELVKKAWRAKHQG---------VLQLWKDLTEGFAC 530
           TA +++K A     Q          ++Q+  +L      
Sbjct: 878 TAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELVFEVKA 916


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 175/554 (31%), Gaps = 90/554 (16%)

Query: 5   FIDIETRSPQPLPKVGV---WAY-AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET    P+    V   ++Y A++A      + +   P ++            L   
Sbjct: 314 ALDTETTGLDPMQASLVGMSFSYEADRAFYAPLTHDYLGAPDQVG----VEKALEILGPV 369

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFS 119
           L +  +  +  N  ++ I+  +  G D+    +  T V +        S     +A+   
Sbjct: 370 LSNPEIKKIGQNIKYDWIVLARH-GADLQGVAF-DTMVASYLLNPSHRSHGLDQIAMELL 427

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           EH     E            +          N V   +    Y   D + T +++  L P
Sbjct: 428 EHRMISYE-----------EVCGKGAKAITFNQVPL-EKAVPYACEDADVTFQIYGLLQP 475

Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +           E  L  +   +   G  +D D +  L +      +  +++I +L  
Sbjct: 476 KLEKNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIYQLAG 535

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                +     L   LF   G+ +   ++           +T LA    L  L     ++
Sbjct: 536 EEFNIA-SPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILRYRSV 594

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L   +    GR+  +      + TGR S      QN+P +          
Sbjct: 595 AKLKSTYVDALQSLIHPETGRVHTSFN-QNVTATGRLSSSNPNLQNIPIRT--------- 644

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   I   G ++  AD + IE R+LA ++ +++ I+ F 
Sbjct: 645 ---------------PEGKRIREAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIELFK 689

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDL 459
           +GEDI+  T ++ F    + V+ E R   K +   + Y  GA                 +
Sbjct: 690 SGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGMGAFRLSNEIGVSRKTAQRYI 749

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498
             +    K    F +   A +H   M                            A    +
Sbjct: 750 DNYFVTYKGVKKFIEETIALAHETGMTKTLLGRTRPLPDINAKNRVLMEAAERIATNTPI 809

Query: 499 IGTACELVKKAWRA 512
            GTA +L+K A   
Sbjct: 810 QGTAADLIKVAMIK 823


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 199/589 (33%), Gaps = 102/589 (17%)

Query: 2   SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            +   D ET S       +    V   A+ A     A+ ++  P +L     +  + + +
Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQDAYYVPLAHDYEGAPEQL----NREVILAQI 401

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLA 115
              L DE+V  + H+  ++  + +   GI +    W   ++LA       +       +A
Sbjct: 402 KPILEDESVKKIGHHLKYDAHVLENH-GIHL--AGWYFDTMLASYVLYSVATRHGMDDVA 458

Query: 116 LNFSEHLTKMEEG----KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  HLT   E      A    F +  +++  +                Y   D   T 
Sbjct: 459 RLYLSHLTTTYEQVAGRGAKQKTFNQIPLETAAH----------------YAAEDAHVTY 502

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L++ L             L + E  +  +   + + G  +DL  + +L    +   + L
Sbjct: 503 RLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNL 562

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +  I+++      +      +   LF   G+     +  T +   S S + ++   +   
Sbjct: 563 ENQIMEIAGESF-NVSSPKQVGEVLFEKLGLKGGKKT-TTGQYSTSESVLEKIEHPIAQL 620

Query: 281 RLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L   G + LK    + L +  + D     T      + TGR S      QN+P +    
Sbjct: 621 ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIR---- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  G+ L+ AD + IE R++A ++ ++ 
Sbjct: 677 --------------------AEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEA 716

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF +G+D++  T A+    P+++V+ +QR   K +   L Y        +       
Sbjct: 717 LLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQ 776

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++Q+         +                           ++ ++ ++      
Sbjct: 777 ESQDYIKQYFHRYPGIYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERA 836

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           A+   L G+A +++K A     + +     ++   + +     V E  +
Sbjct: 837 AINAPLQGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVFEVDEDIA 885


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/581 (18%), Positives = 200/581 (34%), Gaps = 98/581 (16%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSD----- 56
           D+ET S           Y E A I   ++A              D T    +P +     
Sbjct: 328 DLETNSLD---------YME-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLAR 377

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L   L D     V  N  F+R +     GI++       + + +      +       LA
Sbjct: 378 LKPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIH-HDSMLESYVLDSTATRHNMDSLA 435

Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEAT 170
           L + +  T   +M  GK      F + +I+   PY    A+       +     +  E+ 
Sbjct: 436 LKYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQEESL 495

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           R L++ L      E  L  +   +   G ++D   +    + +A   KKL+++   L   
Sbjct: 496 RRLYQEL------EIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQEAFDLAGE 549

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               +     ++  L+    + +   +  T +   + + + +LA D  L +       + 
Sbjct: 550 SFNLA-SPKQIQAILYEKLKLPVTRKTP-TGQPSTAETVLQELALDYPLPQRLLQYRTLS 607

Query: 291 KLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL +     L   V+   GR+  +      + TGR S      QN+P +           
Sbjct: 608 KLKSTYTDRLPLQVNPHTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRT---------- 656

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G +LV AD + IE R++A ++ ++  + AF  
Sbjct: 657 --------------AEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEA 702

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQ 460
            EDI+  T  + F TP+++V+ EQR   K +   L Y   A           +     ++
Sbjct: 703 EEDIHQRTATEVFRTPLEEVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIE 762

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++ Q       + D                          S     ++Q    A+   + 
Sbjct: 763 RYFQRYPGVKAYMDNICQQARQKGYVETLFGRRLYLPDIHSRQTQRRNQAERTAINAPMQ 822

Query: 500 GTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
           G+A +++K+A      W  K+    ++   + +     V E
Sbjct: 823 GSAADIIKRAMIHTDGWLQKNSDNARMIMQVHDELVFEVAE 863


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/600 (16%), Positives = 191/600 (31%), Gaps = 112/600 (18%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   L           + G  AY          + + D P +L           +
Sbjct: 361 DTETDSLDTLSAHLIGLSFAIEKGKGAY------LPLGHNYLDAPQQLP--------LDE 406

Query: 57  LLQY----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           +L      L D+ +  +  N  F+  +      I++ +  +  T + +      + L   
Sbjct: 407 VLAAIKPILVDKNIQKIGQNLKFDYGVMANY-DIELKNMAF-DTMLESYVLNSVAGLGRH 464

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +      HL         IA   K  +           +    +    Y   D + T  
Sbjct: 465 DMDSLAQRHLNHKTITFEEIAGKGKNQLTF---------NQIPLEQASTYAAEDADVTLL 515

Query: 173 LFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L P  +            E  L  +   +   G  ID + + K    IA    +++
Sbjct: 516 LHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIASRLMEIE 575

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++   + +     +     L+  LF    + +V  +     S  +   + +LA    L +
Sbjct: 576 KEAYAIAEQEFNLA-SPKQLQAILFEKLQLPVVKKTPSGAPST-NEEVLEELAFSHELPK 633

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +     ++ KL     + L   +    +   T      + TGR S      QN+P +   
Sbjct: 634 IILQHRSLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRT-- 691

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G K+V AD + IE R++A ++ + 
Sbjct: 692 ----------------------EEGRRIRQAFIAREGYKIVAADYSQIELRIMAHLSQDK 729

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452
             + AFA G+DI+  T A+ F   +  V+ EQR   K +   L Y   A    +      
Sbjct: 730 GLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIYGMSAFGLSRQLGITR 789

Query: 453 SHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPE 491
                 + ++ +      ++ +                          S +   +     
Sbjct: 790 GQAQHYMDRYFERYPGVLSYMERTRKQAAEQGYVETLAGRRLYLPDINSRNAMRRKASER 849

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVAN 545
            A+   + GTA +++KKA  A  + +      L +   + +     V+E     +++   
Sbjct: 850 EAINAPMQGTAADIIKKAMIALDKWIESVKPDLYMLMQVHDELVFEVKESAVDRSQQKIR 909


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/581 (18%), Positives = 191/581 (32%), Gaps = 110/581 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERI 78
           A     A+   +      D      + + +            L D++V+ +A N  ++ +
Sbjct: 437 AAYIPFAHKSGNG-----DLLGGGTLENQIPLREALAVLKPLLEDKSVLKIAQNLKYDLV 491

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---LNFSEHLTKMEEGKALIARF 135
           +  +  GID+               G P       LA   L  +    K   G       
Sbjct: 492 IMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDALADKWLGHTPLQLKDVIGS------ 544

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGER 185
            K S+     D  +A           +   D + T  L+  L P              ER
Sbjct: 545 GKNSVGFDQVDIDKATA---------HAAEDADVTLRLWLVLKPRLAATGLVSVYERLER 595

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +  RG  +D  ++ +L   +AQ   +L+E+I +L    I +      L   L
Sbjct: 596 PLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLVGERI-NIGSPKQLGDIL 654

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAV 299
           F   G+     ++ T +   S   +  LA +   L R       + KL     + L   +
Sbjct: 655 FGRMGLPGGSKTK-TGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFI 713

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             + +   T     A+ TGR S      QN+P +                          
Sbjct: 714 HPETKRVHTSYALAATTTGRLSSSDPNLQNIPVRT------------------------A 749

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R+  IA  G +LV AD + IE RVLA +A      +AFA+G DI+  T ++ FN 
Sbjct: 750 EGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNV 809

Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474
           P++ +  E R   K +   + Y     G A             ++++ +       + + 
Sbjct: 810 PVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEASNYIKKYFERFPGIRDYIEE 869

Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                               +    S +  ++      ++  +L GTA +++++A     
Sbjct: 870 TKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNERASINARLQGTAADIIRRAMVRMD 929

Query: 515 QG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +           +LQ+  +L         E      R V  
Sbjct: 930 EALEKAKLSARMLLQVHDELIFETVDAEVEATIPIVRHVME 970


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/596 (17%), Positives = 202/596 (33%), Gaps = 101/596 (16%)

Query: 7   DIETRSPQPLPKVGVWAYAEQA----VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   L    V      A         A+ + D P +L    ++  + + L   L 
Sbjct: 356 DTETDSLDVLSANLVGISCADAPGQAYYIPLAHDYLDAPAQL----DREWVLARLQPLLE 411

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           DE V  V  N  ++  +  +  GI +    +  T + +     +        LA    +H
Sbjct: 412 DEKVAKVGQNLKYDIGVMARH-GIILRGVAF-DTMLESYVLNSVAGRHDMDSLAARHLDH 469

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            T   E  A   +  + + +  P            +   EY   D + T  L +RL P+ 
Sbjct: 470 KTITFEEVAGKGK-GQLTFNQIP-----------LEQAAEYAAEDADVTLRLHQRLWPML 517

Query: 182 DGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + E             L  +   +   G  ID  ++ +  + +A     L++    L D 
Sbjct: 518 ESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDSTILGQHSQELAVRLNALEQQAHTLADE 577

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S  T  L+  LF    + ++  + G   S      +    +   L ++      + 
Sbjct: 578 PFNLS-STKQLQSILFDKQQLPILKKTPGGAPSTNEEVLVELAEQGYELPQVILDYRTLA 636

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + VS   GR+  +      + TGR S      QN+P +           
Sbjct: 637 KLKSTYTDKLPQMVSPLTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS---------- 685

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G K+V AD + IE R++A ++G+   ++AFA 
Sbjct: 686 --------------DEGRRIRQAFIAPAGSKIVAADYSQIELRIMAHLSGDRGLLEAFAA 731

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G+DI+  T A+ F  P++ V+ +QR   K +   L Y       A+      +     + 
Sbjct: 732 GKDIHRATAAEVFGLPLEAVTADQRRSAKAINFGLIYGMSAFGLARQLNIGRNEAQRYMD 791

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                       +  + +   +      A+   + 
Sbjct: 792 LYFERYPGVLAYMERTRQQASEQGYVETLDGRRLYLPEINARNAMRRKAAERAAINAPMQ 851

Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           GTA +++K+A  A            + ++Q+  +L       + +      R +  
Sbjct: 852 GTAADIIKRAMIAVDAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLME 907



 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
           Q  + DI+   M               +++ VHDE+V E P+      V  + +LM
Sbjct: 851 QGTAADIIKRAMIAVDAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLM 906


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 194/583 (33%), Gaps = 116/583 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S            A +A I   +++             +            + 
Sbjct: 358 ALDTET-SALD---------AMRAQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQVL 407

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L  +L D     +  +  ++R +F    GI++       T + +    +      A L
Sbjct: 408 ARLKPWLEDARHAKLGQHIKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHNLASL 465

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G+  +     C   +   P+     +    +         D + T E
Sbjct: 466 AER--------HTGRTGLNYEDLCGKGVHQIPFAQVSVDKAATY------ACEDSDQTLE 511

Query: 173 LFKRLIPL---SDGERDLWLLDQT-------INDRGYRIDLDLVLKLQELIAQERKKLDE 222
           + + L PL   ++  R ++ L+         +   G  ID  L+ +    + Q   +L+ 
Sbjct: 512 VHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRILRLET 571

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +  ++      +      L    F   G+ +V  +  T     +   + +LA D  L   
Sbjct: 572 EAYEIAGQPF-NLNSPKQLGEIFFDKLGMPVVRKT-TTGARSTNEEVLEKLAADYPLPAR 629

Query: 283 ASSGSAILKLN-TLSE-----AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL  T ++     A+   GR+         + TGR S      QN+P +   
Sbjct: 630 LLEHRSLSKLKSTYTDKLGLLALPRTGRVHTHYA-QAVAVTGRLSSSDPNLQNIPVRT-- 686

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A  G+ +  AD + IE R++A I+G+ 
Sbjct: 687 ----------------------PEGRRIREAFVAPPGRVIASADYSQIELRIMAHISGDP 724

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AF +G D++  T A+ F  P+ +VS EQR   KV+   L Y       AK      
Sbjct: 725 SLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGLDR 784

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------YPEFA------------ 493
                 +Q++ +       + +  +A +  L   +         PE              
Sbjct: 785 QAAKNYIQRYFERYPGVRQYMEETKARAKSLGYVETVFGRRLMLPEINSPNGPRRAAAER 844

Query: 494 --VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
             +   + GTA +L+KKA  A              ++Q+  +L
Sbjct: 845 AAINAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQVHDEL 887


>gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 208/619 (33%), Gaps = 112/619 (18%)

Query: 5   FIDIETRSPQPL--PKVGVWAYAEQAV--ITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQ 59
            ID ET S   +    VG+    E          + + D P +L W       + + L  
Sbjct: 352 AIDTETNSLNYMQAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSW-----KTVLAALKT 406

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D  +  V  N  ++  +  +  G+++       T + + T           LA  F 
Sbjct: 407 VLEDPNIKKVGQNLKYDLTILARH-GVELQGV-VYDTMLESYTLDSTGRHNMDDLAKRFL 464

Query: 120 EHL-----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            H          +GK  +  F +  ID                            T +L 
Sbjct: 465 HHDTIHFEDLAGKGKGQLT-FDQIEIDKAAEYAAEDAD----------------VTFKLH 507

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   +   G  ID DL+ +  + I     +L++ 
Sbjct: 508 QVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQLEQQ 567

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +L       +  T  L+  LF   G+ ++  +     S  +   + +LA +  L +L 
Sbjct: 568 AHQLAGQAFNLA-STKQLQEILFGKLGLPVLKKTPKGAPST-NEEVLEELAYEHELPKLL 625

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                  KL     + L + +    GR+  +      + TGR S      QN+P +    
Sbjct: 626 VEHRGFSKLKSTYTDKLPQMIDPNTGRVHTSY-HQAVTITGRLSSSDPNLQNIPTRS--- 681

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G K+V AD + IE R++A ++ +  
Sbjct: 682 ---------------------EEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSADAG 720

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
              AF++G D++ +T A+ F+ P+++V+ +QR   K +   L Y       A+  +   +
Sbjct: 721 LAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGLIYGMSAFGLARQLQIPRN 780

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                + ++         F +                       + +S +   +      
Sbjct: 781 EAQTYIDRYFHRYPGVKQFMNDIQEKAKQQGYVETLLGRRLYLPELKSSNGMRRKAAERV 840

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A+   + GTA +++KKA     + +              ++    +    V  V    + 
Sbjct: 841 AINAPMQGTAADIIKKAMIDIDRFI---------ADKNDIRMIMQVHDELVFEVKEDKVE 891

Query: 553 RHKRDVHIVLPSSRRLVYS 571
            +++ +  ++ ++ +L   
Sbjct: 892 YYEKIIKDMMENAVKLSVP 910


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 181/509 (35%), Gaps = 89/509 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE+V+ VA N  ++ +L K+     I ++ +  T +++        +     L+
Sbjct: 488 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        K ++     D  RA H         Y   D + T  
Sbjct: 545 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 589

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 590 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 649

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S   +  LA     L R
Sbjct: 650 EIYVLAGERF-NIGSPKQLGDILFGKMGLSGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 707

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + +   T     ++ TGR S      QN+P +   
Sbjct: 708 KIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 765

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 766 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 803

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 804 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 863

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 864 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 923

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520
            A+   + G+A +++++A       ++++
Sbjct: 924 AAINAPIQGSAADVIRRAMIKIEPALVEV 952


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/557 (19%), Positives = 192/557 (34%), Gaps = 100/557 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S       L  +     A +A     A+ +   P +L    ++      L   
Sbjct: 346 AVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRPI 401

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFS 119
           L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL + 
Sbjct: 402 LEDAKLKKVGQNLKYDISVLANA-GITLQGVAF-DTMLESYVFNSVASRHDMDGLALKYL 459

Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
            H     E   GK      F + S+++                   Y   D + T  L +
Sbjct: 460 GHKNIAFEDIAGKGAKQLTFNQISLETAA----------------PYAAEDADITLRLHQ 503

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P            +D E  L  +   I  +G  ID  L+ +  E +A++  +L+   
Sbjct: 504 HLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKA 563

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             +       S     L++  F   G  ++  +     S      + +LA D  L ++  
Sbjct: 564 YDIAGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVIL 621

Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +     
Sbjct: 622 EHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT---- 676

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                               +    +R   IA  G+K++ AD + IE R++A ++ +   
Sbjct: 677 --------------------VEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGL 716

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AFA G+DI+  T A+ F T  D V+ EQR   K +   L Y       A+      + 
Sbjct: 717 LNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 776

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493
               +  +         + +  +A +                      +   +      A
Sbjct: 777 AQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 836

Query: 494 VKDKLIGTACELVKKAW 510
           +   + GTA +++KKA 
Sbjct: 837 INAPMQGTAADIIKKAM 853



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M +        T+    +++ VHDE+V E       ++   +C LM K 
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/584 (17%), Positives = 192/584 (32%), Gaps = 118/584 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54
            +D ET S   L           A I   +++ +                   +P     
Sbjct: 354 ALDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAVL 403

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113
             L  +L D +   +  +  ++R +F      DI  + +   T + +    +      A 
Sbjct: 404 ERLKPWLEDGSRAKLGQHVKYDRHVFANH---DIGVRGYVHDTMLQSYVLEVHKPHNLAS 460

Query: 114 LALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           LA            G+  I+    C       P+           +    Y   D + T 
Sbjct: 461 LAER--------HTGRTGISYEDLCGKGAKQIPFAQVPV------EQAAAYSCEDSDQTL 506

Query: 172 ELFKRLIPLSDGE---RDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++ + L PL + +   R ++ L+         I   G  ID   + +    + Q   KL+
Sbjct: 507 DVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKLE 566

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++   +      +      L    F   G+ +V  +  T         + +LA+D  L  
Sbjct: 567 QEAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKT-ATGARSTDEEVLEKLAEDYPLPA 624

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 ++ KL     + LS+      GR+         + TGR S      QN+P +  
Sbjct: 625 KILEHRSLSKLKGTYTDKLSQLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT- 682

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A  G+ +  AD + IE R++A ++G+
Sbjct: 683 -----------------------SEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           D  ++AF  G D++  T A+ F   +D+VS EQR   KV+   L Y       A+     
Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGID 779

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
                  + ++ Q       + D  +A +                      +   +    
Sbjct: 780 NKAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAE 839

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
             A+   + GTA +L+KKA  A          +   ++Q+  +L
Sbjct: 840 RAAINAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDEL 883


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/558 (18%), Positives = 192/558 (34%), Gaps = 100/558 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A     A+ +   P +L    ++      L  
Sbjct: 345 MAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAPQQL----DKQTALEKLRP 400

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 401 ILEDAKLKKVGQNLKYDISVLANA-GIQLKGVVF-DTMLESYVFNSVASRHDMDGLALKY 458

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 459 LGHKNIAFEDIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            +D E  L  +   I  +G  ID  L+ +  + +A++  +L+  
Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +       S     L++  F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 563 AYDIAGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVI 620

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 621 LEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 677 ---------------------EEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y       A+      +
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERA 835

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 836 AINAPMQGTAADIIKKAM 853



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M +        T+    +++ VHDE+V E       ++   +C LM K 
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEITMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/579 (18%), Positives = 205/579 (35%), Gaps = 103/579 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + ID ET S       L  +     A +A      + + D P +L    +Q+   + L  
Sbjct: 340 IAIDTETTSLNYMEAKLVGISFAIEAGKAAYLPLGHDYLDAPKQL----DQAEALAKLKP 395

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L +  +  V  N  ++  +F   +GI +    +  T + +   N + +      LAL +
Sbjct: 396 LLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMDDLALKY 453

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             H     E            I          N +   ++   Y   D + T  L + L 
Sbjct: 454 LGHKNISFE-----------EIAGKGVKQLTFNQIDL-EIAAPYAAEDADITLRLHQHLW 501

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P            +D E  L  +   I   G  ID  ++ +  E +A+   +L++   ++
Sbjct: 502 PRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTIDELEQKAFEI 561

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  S     L+   F   G  ++  +     S  +   + +LA D  L ++     
Sbjct: 562 AGEKFNLS-SPKQLQALFFEKLGYPIIKKTPKGAPST-AEDVLVELALDYPLPKIILQHR 619

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL     + L   V++  GR+  +     A+ TGR S      QN+P +        
Sbjct: 620 SLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANAA-TGRLSSSEPNLQNIPIRT------- 671

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  GKK++ AD + IE R++A ++ +   + A
Sbjct: 672 -----------------EEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLLTA 714

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA G+DI+  T A+ F+   D+V+ EQR   K +   L Y       AK           
Sbjct: 715 FAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDISRPEAQK 774

Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496
            +  + +       + +  +AE+                      +   +      A+  
Sbjct: 775 YIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINA 834

Query: 497 KLIGTACELVKKAW-----------RAKHQGVLQLWKDL 524
            + GTA +++KKA            R + + ++Q+  +L
Sbjct: 835 PMQGTAADIIKKAMINIAHWIATETRGEIEMIMQVHDEL 873



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M N        T+   ++++ VHDE+V E        +   +C LM   
Sbjct: 837 QGTAADIIKKAMINIAHWIATETRGEIEMIMQVHDELVFEVDSDKAEEMREKVCQLMADA 896


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/558 (18%), Positives = 192/558 (34%), Gaps = 100/558 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A     A+ +   P +L    ++      L  
Sbjct: 345 MAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAPQQL----DKQTALEKLRP 400

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 401 LLEDAKIKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSIASRHDMDGLALKY 458

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 459 LGHKNIAFEDIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            +D E  L  +   I  +G  ID  L+ +  + +A++  +L+  
Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +       S     L++  F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 563 AYDIAGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVI 620

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 621 LEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 677 ---------------------EEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y       A+      +
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERA 835

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 836 AINAPMQGTAADIIKKAM 853



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M +        T+    +++ VHDE+V E       ++   +C LM K 
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/495 (16%), Positives = 153/495 (30%), Gaps = 82/495 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D  V+ +  N  ++  +F +   I +           A   G+     +     
Sbjct: 404 LKPMLEDPAVLKIGQNIKYDLSVFAQH-KIHVHPIDDTMLISFALNAGIHGHGMDDLSER 462

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                    ++         K           +A          EY   D + T  L++ 
Sbjct: 463 YLGHKPITFKDVAGT----GKAQKSFAQVALDKAT---------EYAAEDADVTLRLWQA 509

Query: 177 LIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P    E          R L  +   +   G ++D D++ +L     Q    L+ +  +
Sbjct: 510 LKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLSRLSADFNQRMAALEAEAHE 569

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285
                  +      L   LF    +     ++ T   +     +  LA D   L R    
Sbjct: 570 QAGRSF-NIGSPKQLGEILFDEMNLPGGKKTK-TGAWVTDGDVLEGLAADGHALPRTIVD 627

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL       L  A++   GR+  +    GA +TGR S      QN+P +      
Sbjct: 628 WRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGA-QTGRLSSTDPNLQNIPVRT----- 681

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  LV AD + IE R+LA +A      
Sbjct: 682 -------------------EEGRKIRQAFIAEEGNVLVSADYSQIELRILAHMADIPALK 722

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +G DI+  T ++ F  PI+ +    R   K +   + Y     G  +     +   
Sbjct: 723 QAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIYGISGFGLGRQLGIPSGEA 782

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLW--------------------MQDQYPEFAVK 495
              ++ + +       + D  +  +                         +      A+ 
Sbjct: 783 NQYIKTYFERFPGIRQYMDETKEFARATGFVKTAFGRKIHLPDIKSKGPARSFAERQAIN 842

Query: 496 DKLIGTACELVKKAW 510
             + G+A +++K+A 
Sbjct: 843 APIQGSAADIIKRAM 857


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/596 (17%), Positives = 193/596 (32%), Gaps = 98/596 (16%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVK-LWDRTE--QSAMPSDLLQ 59
            ID ET S  P+    VG+    E  V      A     V  L D  +  +  +   +  
Sbjct: 359 AIDTETTSLDPMQAQLVGISLSVEPGVACYIPVAHRGPDVAGLPDHGQLSREFVLGRMRA 418

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           +L D +   +  N  ++  +F    G+ +       T + +       +     LA    
Sbjct: 419 WLEDASRPKLGQNLKYDVHVFANH-GVKLRGVA-HDTMLQSYVLASHRNHGMDSLAERLL 476

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              T   E        C        +D              EY   D + T  L +++ P
Sbjct: 477 SLKTITYE------EVCGKGASQIGFDQID------LARATEYAAEDADVTLRLHRKMFP 524

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        + E  + ++ Q +   G  ID + +      + Q    L++   +  
Sbjct: 525 QVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQAAYEAA 584

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      +   LF    + +V  +     S      + +LA+D  L +L      
Sbjct: 585 GQPF-NLGSPKQIGEILFSQMKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 642

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L + V+   GR+  +     A  TGR +      QN+P +         
Sbjct: 643 LAKLKSTYTDKLPKMVNPQTGRVHTSYGQATAV-TGRLASTEPNLQNIPVRT-------- 693

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G  +V AD + IE R++A I+G++  ++AF
Sbjct: 694 ----------------EEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAF 737

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANGEDI+  T  + F    + VS EQR   KV+   L Y       A             
Sbjct: 738 ANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIEREAAKHY 797

Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497
           + ++       + + +            E      LW+          +      A+   
Sbjct: 798 IDRYFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAP 857

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           + GTA +L+K +  A          + + ++Q+  +L         E   +    +
Sbjct: 858 MQGTAADLIKLSMIAVQGWLERDGLQTRQIMQVHDELVLEVPEHELELVKVRLPEL 913


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/531 (19%), Positives = 186/531 (35%), Gaps = 97/531 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE+V+ VA N  ++ +L K+     + +K +  T +++        +     L+
Sbjct: 471 LKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDTMLISYVLDAGTGAHGMDPLS 527

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        K +I     D  RA H         Y   D + T  
Sbjct: 528 EKFLGHTPIPYKDVAGS------GKANITFDLVDIDRATH---------YAAEDADVTLR 572

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 573 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 632

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S S +  LA     L R
Sbjct: 633 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 690

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + R   T     ++ TGR S      QN+P +   
Sbjct: 691 KIVDWRQLTKLKSTYTDALPGYVHPETRRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 748

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 749 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 786

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 787 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 846

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 847 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 906

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
            A+   + G+A +++++A                +++   + +     V++
Sbjct: 907 AAINAPIQGSAADVIRRAMIKMEPALAEAGLAERVRMLLQVHDELIFEVED 957


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/530 (18%), Positives = 182/530 (34%), Gaps = 94/530 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +V+ +A N  ++ +L K+  GI+                G  ++     L+ 
Sbjct: 471 LKALLEDTSVLKIAQNLKYDYLLMKRY-GIETKGFDDTMLLSYVLDGGANATHGMDSLSE 529

Query: 117 NFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            +  H     K   G        K +I     D  RA           Y   D + T  L
Sbjct: 530 RWLGHKPIAYKDVAGS------GKSNITFDLVDIDRATA---------YAAEDADVTLRL 574

Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +  L P              ER L  +   + +RG  ID  ++ +L   +AQ   +L+++
Sbjct: 575 WLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGITIDRQILSRLSGELAQGAARLEDE 634

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282
           I  L      +      L   LF   G+     ++ T +   S   +  LA     L R 
Sbjct: 635 IYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSAQVLEDLAAAGFELPRK 692

Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                 + KL     + L   V  + +   T     ++ TGR S      QN+P +    
Sbjct: 693 IVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT--- 749

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  I++ G KL+ AD + IE RVLA +A    
Sbjct: 750 ---------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVANIPQ 788

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AFA+G DI+  T ++ F  PI+ +  E R   K +   + Y     G A       S
Sbjct: 789 LEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERS 848

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
             G  ++++ +       + +                     + +  S +  ++      
Sbjct: 849 EAGDYIKRYFERFPGIRDYMESTKATARDKGYVETIFGRRVHFPEIRSSNPSVRAFNERA 908

Query: 493 AVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
           ++   + G+A +++++A                +++   + +     V++
Sbjct: 909 SINAPIQGSAADVIRRAMIKMEPALADAGLGDRVRMLLQVHDELIFEVED 958


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/606 (18%), Positives = 199/606 (32%), Gaps = 113/606 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET S  P+    VG+    E   A     A+ +   P +L     +  +   L  +
Sbjct: 332 SIDTETTSLNPMEAELVGLSLCTEPGHAAYIPLAHHYQGVPSQL----NREQVLQRLKPW 387

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---LN 117
           L +  +  V  N  ++R +F    G+ +       T + +       S     LA   L+
Sbjct: 388 LENSDIPKVGQNLKYDRHVFANH-GVMLNGIA-HDTLLQSYVLESHLSHDLDSLARRHLD 445

Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                     GK      F +  I                Q  G Y   D +    L   
Sbjct: 446 IQTISYDDVTGKGAKRIGFEQVEI----------------QQAGIYAAEDADIPLRLHHF 489

Query: 177 LIPL-----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P+              E  L  +   I   G  +D DL+ +    +A++   L++   
Sbjct: 490 LYPIISKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQAH 549

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L      +   T  ++  LF    + ++  +     S      + QLA D  L ++   
Sbjct: 550 SLAGRAF-NLNSTKQIQEILFGQHKLPVIKKTPKGAPST-DEEVLQQLALDYPLPKILLD 607

Query: 286 GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             ++ KL     + L + V+   GR+         + TGR +      QN+P +      
Sbjct: 608 YRSLAKLRSTYIDKLPQMVNRQTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 661

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA +G  ++ AD + IE R++A I+ +   I
Sbjct: 662 -------------------PEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLI 702

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF  G+DI+  T A+ F   + +V+ EQR   KV+   L Y       A       S  
Sbjct: 703 RAFLGGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMSEFGLATQLGIDRSAA 762

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494
              + ++       + +    +  +      +                          A+
Sbjct: 763 RAFIDRYFARYPGVADYMQRTRELARQNGYVETVLGRRLQLPDIRSSQHNRRMGAERAAI 822

Query: 495 KDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLT----EGFACVVQEGGSISA 540
              + GTA +++K A  + HQ           ++Q+  +L     E    VV+E   I  
Sbjct: 823 NAPMQGTAADIIKLAMISVHQWLVKAPLQSKLIMQVHDELVLEVIEDELFVVKENLIILM 882

Query: 541 RRVANV 546
                +
Sbjct: 883 ENTFKL 888


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/509 (19%), Positives = 181/509 (35%), Gaps = 89/509 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE+++ VA N  ++ +L K+     I ++ +  T +++        +     L+
Sbjct: 488 LKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        K ++     D  RA H         Y   D + T  
Sbjct: 545 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 589

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 590 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLED 649

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S   +  LA     L R
Sbjct: 650 EIYVLAGERF-NIGSPKQLGDILFGKMGLSGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 707

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + +   T     ++ TGR S      QN+P +   
Sbjct: 708 KIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 765

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 766 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 803

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 804 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 863

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 864 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 923

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520
            A+   + G+A +++++A       ++++
Sbjct: 924 AAINAPIQGSAADVIRRAMIKIEPALVEV 952


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/537 (17%), Positives = 183/537 (34%), Gaps = 75/537 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L+D +++ +  N  ++  +F +   +++           A   G  +   +     
Sbjct: 409 LRPVLQDPSIIKIGQNVKYDTKIFARY-DVNLAPVDDTMLLSYAINGGKHNHGMDYLSER 467

Query: 117 NFSEH----LTKMEEGKALIARFCKGSID-SPPYDCTRAN-HVQAWQLFGEYCKRDVEAT 170
             +       T +  GK+ I  F K SI+ +  Y    A+  ++ W+LF           
Sbjct: 468 YLNHKPISIKTLLGSGKSAIT-FDKVSINDAVNYAAEDADITLRLWKLFKPMLHESSVT- 525

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            ++++ L      ER L  +   +   G ++D + + ++    AQ    L+ +I  L   
Sbjct: 526 -KIYETL------ERPLIPVLAKMEMNGIKVDRNTLSRMSNNFAQSMSGLEAEIYNLAGQ 578

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLAS 284
              +      L   LF    +      + T         +  LA +       +L+    
Sbjct: 579 TF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYGTGVDVLEDLASEGHELPVKVLDWRQM 636

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S       + L   ++   GR+  +    GAS TGR S      QN+P +  +       
Sbjct: 637 SKLKSTYTDALQGHINPNTGRVHTSYVISGAS-TGRLSSTDPNLQNIPIRSEA------- 688

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA  G  L+  D + IE R+LA IA  D   +AF 
Sbjct: 689 -----------------GRKIREAFIAEEGNVLLSLDYSQIELRILAHIAKIDTLKQAFH 731

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            G+DI+  T ++ FN P++ +    R   K +   + Y     G A+  +         +
Sbjct: 732 EGQDIHALTASQMFNVPLENMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRKEAQSFI 791

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLI 499
             + +      T+ D   + +      +                         A+   + 
Sbjct: 792 DTYFERFPGIRTYMDETVSFAKENGYVETLFGRKIHTSEINAKGPQAGFAKRAAINAPIQ 851

Query: 500 GTACELVKKAWRAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           GTA +++++A       +  L  K L +    ++ E    +      V R +M +  
Sbjct: 852 GTAADVIRRAMVQMPNAISHLPAKMLLQVHDELIFEVNKDALNETTEVVRNIMEKAS 908


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 96/599 (16%), Positives = 188/599 (31%), Gaps = 116/599 (19%)

Query: 7   DIETRSPQPLPKV-----------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           D ET S     +            G  AY         A+ +   P +L    +++ +  
Sbjct: 333 DTET-SSLDYMRAEVIGLSFAVEPGAAAY------VPLAHDYPGAPPQL----DRAMVLE 381

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACL 114
            L   L D     +  +  ++  +     GI +   R   T + +      +       L
Sbjct: 382 RLRPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIR-HDTMLESYVLNSTATRHDMDSL 439

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A  + +  T   E  A             P+                Y   D + T  L 
Sbjct: 440 AERYLDRKTLHYEDVA------GKGAKQIPFARVSVEDA------CRYAAEDADVTLCLH 487

Query: 175 KRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P  +            E  L  +   I   G  +D+  + +    + +   +++ +
Sbjct: 488 RALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMAEVEAE 547

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +      +      ++  L+   G+ ++  +  T +     S +  LA+   L RL 
Sbjct: 548 ARAVAGETF-NLGSPKQIQTILYDKLGLPVIKKTP-TGQPSTDESVLQDLAETFELPRLI 605

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +      + TGR S      QN+P +    
Sbjct: 606 LEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRT--- 661

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  G KL+ AD + IE R++A ++G+  
Sbjct: 662 ---------------------EEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDAN 700

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA   D++  T A+ F   +++V+  QR   K +   L Y       AK       
Sbjct: 701 LLAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAFGLAKQLGIQQK 760

Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492
                +  +         + D                         +S +   +      
Sbjct: 761 LAQGYIDLYFARYPGVRAYMDRTRESARELGYVETLFGRRLHVPDIQSRNGQRRQYAERT 820

Query: 493 AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
           A+   + GTA +++K+A  A            + ++Q+  +L    A       + + R
Sbjct: 821 AINAPMQGTAADIIKRAMIALDAWIESSGAPLRMIMQVHDELVFEVAEDFVSEATATVR 879



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 22/187 (11%)

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS-ARR 542
           + +D     A   ++ G A E V  + R   + +          F    Q G     A+ 
Sbjct: 705 FAEDADVHRATAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAFGLAKQLGIQQKLAQG 764

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-------KGDCSYLNTATSQL-MRERTYG 594
             ++        +  +     S+R L Y +          D    N    Q   R     
Sbjct: 765 YIDLYFARYPGVRAYMDRTRESARELGYVETLFGRRLHVPDIQSRNGQRRQYAERTAINA 824

Query: 595 GKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTL 647
                  +Q  + DI+   M               +++ VHDE+V E  +        T+
Sbjct: 825 P------MQGTAADIIKRAMIALDAWIESSGAPLRMIMQVHDELVFEVAEDFVSEATATV 878

Query: 648 CSLMTKN 654
              M++ 
Sbjct: 879 REHMSRA 885


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 193/565 (34%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A      + +   P +  D+T        L  
Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 399

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 502 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y       A+       
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859



 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M N        T+    +++ VHDE+V E       ++   +C+LM + 
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 193/565 (34%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A      + +   P +  D+T        L  
Sbjct: 358 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 413

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 414 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 471

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 472 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 515

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 516 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 575

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 576 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 633

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 634 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 689

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 690 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 728

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y       A+       
Sbjct: 729 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 788

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 789 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 848

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 849 AINAPMQGTAADIIKKAMINIAQWI 873



 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M N        T+    +++ VHDE+V E       ++   +C+LM + 
Sbjct: 855 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 914


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 104/565 (18%), Positives = 193/565 (34%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A      + +   P ++     ++     L  
Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQI----NKTVALEKLRP 399

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 502 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y       A+       
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M N        T+    +++ VHDE+V E       ++   +C+LM + 
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 108/568 (19%), Positives = 186/568 (32%), Gaps = 95/568 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY--- 60
           ID ET S  P+    VG+    +         A     V  +D   Q +  + L +    
Sbjct: 359 IDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAAQLSRDTVLARMKLW 418

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFS 119
           L DE+   V  +  ++  +F      DI  +     T + +       +     LA    
Sbjct: 419 LEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              T   E        C        +D    +         EY   D + T  L + L P
Sbjct: 476 HLKTITYEAV------CGKGASQIGFDEVPLD------RATEYAAEDADVTLRLHRTLFP 523

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                          E    ++ Q +   G  ID D + K    +      L+ +  KL 
Sbjct: 524 KVAEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELGLRLIDLEAEAHKLA 583

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S     +    F    + ++  +     S      + +LA+D  L +L      
Sbjct: 584 GQPFNLS-SPKQIGDIFFNQMKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 641

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L + V+   GR+  T     A  TGR +      QN+P +         
Sbjct: 642 LAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT-------- 692

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G  +V AD + IE R++A ++ ++  ++AF
Sbjct: 693 ----------------EEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAF 736

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
             G+D++  T A+ FN    +V+ +QR + KV+   L Y       A           L 
Sbjct: 737 REGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAKLY 796

Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497
           + ++       +++ D            E      LW+          +      A+   
Sbjct: 797 IDRYFARYPGAASYMDETRQRAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAP 856

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLT 525
           + GTA +L+K +  A     +Q W D  
Sbjct: 857 MQGTAADLIKLSMLA-----VQGWLDAE 879



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
            RRL   D+ G       A     R            +Q  + D++   M          
Sbjct: 829 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQGWLDAE 879

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +V+ VHDE+V E P      V   L  LM 
Sbjct: 880 AMRSRLVMQVHDELVLEVPQDELAVVRERLPELMC 914


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 97/532 (18%), Positives = 180/532 (33%), Gaps = 103/532 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L +  +  +  N  ++  +F +  GI++    +  T + + T           LA
Sbjct: 431 QLKPILENPNIRKIGQNIKYDLTIFARN-GIELQGVAF-DTMLQSYTLDSTGRHNMDNLA 488

Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             +  H T        +GK  +  F +  +D                   EY   D E T
Sbjct: 489 ERYLGHQTIPFEELAGKGKHQLT-FDQIELDKA----------------TEYAGEDAEIT 531

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L                 E  L  +   +   G  ID   +L     I Q  K+
Sbjct: 532 MKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKE 591

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278
           L+  + +    +   +  T  L+  LF   G+ ++  +     S  +   + +LA+    
Sbjct: 592 LETLVHQEAGEVFNLA-STKQLQEILFNKLGLPILKKTPKGAPST-NEEVLEELAQMGHQ 649

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +  L      + KL     + L + +++  GR+  +      + TGR S      QN+P 
Sbjct: 650 VPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPI 708

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +                              +R   IA +G  ++ AD + IE R++A +
Sbjct: 709 R------------------------NEQGRRIRQAFIARDGYVILAADYSQIELRIMAHL 744

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448
           A +   IKAFA G+DI+ +T A+ F  P++ V+ EQR   K +   L Y       A   
Sbjct: 745 ANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEFGLANQL 804

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQD 487
               +     ++ + Q   +   F                         +  S +   + 
Sbjct: 805 GISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPEINSSNQMRRK 864

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQG---------VLQLWKDLTEGFAC 530
                A+   + GTA +++K A     Q          ++Q+  +L      
Sbjct: 865 AAERVAINAPMQGTAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELVFEVKA 916


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 192/565 (33%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A      + +   P +  D+T        L  
Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 399

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P             + E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 502 QHLWPRLEKEAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y       A+       
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859



 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M N        T+    +++ VHDE+V E       ++   +C+LM + 
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 120/333 (36%), Positives = 171/333 (51%), Gaps = 13/333 (3%)

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDC 147
           P +RW  T V A  +GLP SL   C  L   +   K +EGKALI  FCK    +S     
Sbjct: 7   PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDL 205
           T   H + W+ F  Y   D+EA RE++ RL   +    E  LW  DQ INDRG  +D+ L
Sbjct: 67  TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                E + QE+K+L +   ++TDG ++++ Q  AL  ++    G++L DM   TL+  +
Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           ++ ++    K+L+  RL +S ++  K   L + VS DGRLRGTLQF GASRTGRW+G +F
Sbjct: 187 ANPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLF 246

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADL 381
           QPQNLPR    +E + + I+A N        L +AS  V +    S    +  KL   D 
Sbjct: 247 QPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 306

Query: 382 AGIEARVLAWIAGEDW------KIKAFANGEDI 408
              EA     +    W       +KAF  G  +
Sbjct: 307 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 183/572 (31%), Gaps = 103/572 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ ++  P +L    ++ A+   L   L D     V  N+ ++  +        
Sbjct: 364 AAYVPLAHDYEGAPAQL----DREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
                   T + +      +       LA  + +H T   E   GK      F + ++D 
Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDK 479

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
                            G Y   D + T  L   L             L D E  L  + 
Sbjct: 480 A----------------GPYAAEDADITLRLHDALQARLAQTPSVQPVLMDIEMPLVPVL 523

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +  +L+    +L      +      L   L+   G+
Sbjct: 524 ARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETF-NLGSPKQLGTILYDKLGM 582

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S           +   L  +     ++ KL     + L   ++   GR+
Sbjct: 583 PVLSKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRI 642

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             + Q    + TGR S      QN+P +                              +R
Sbjct: 643 HTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRIR 677

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 678 QAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVT 737

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            +QR   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 738 TDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAA 797

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++K+A           
Sbjct: 798 EQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSES 857

Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARR 542
               + +LQ+  +L       + +      R+
Sbjct: 858 GLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+      L        R            +Q  + DI+   M    
Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVKVD 851

Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
                      ++L VHDE+V E  +     V   +   M++ 
Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQA 894


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 111/541 (20%), Positives = 186/541 (34%), Gaps = 93/541 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D+ V+ +AHN  ++ ++  +  G+D+       T +++ T  L +   N  L  
Sbjct: 470 LKPLLEDDAVLKIAHNMKYDLLVLARY-GVDVAP--IEDTMLISYT--LDTGRNNHGLDE 524

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              +HL       + +A   +  I        RA          EY   D + T  L++ 
Sbjct: 525 LTLKHLGHENIPFSAVAGSGRNFIGFARVALDRAT---------EYATEDADVTLRLWRA 575

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              ER +      +  RG  ID  ++ +L    AQ+  +L+ DI  
Sbjct: 576 LKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSGEFAQDMARLEADIFD 635

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280
           L      +      L   LF   G+     +  T     S S +  LA +       IL+
Sbjct: 636 LAGETF-NLGSPKQLGDILFGKMGLPGAKKT-ATGAWSTSASVLEDLANEGNDFARRILD 693

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S       + L   V+   GR+  +     A+ TGR S      QN+P        
Sbjct: 694 WRQLSKLKSTYTDALPGFVNKETGRVHTSYAL-AATTTGRLSSSDPNLQNIP-------- 744

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                               A   +R   +AS G  L+ AD + IE R+LA IA      
Sbjct: 745 ----------------VRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHIADIPQLK 788

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           KAFA+G DI+  T ++ F  P+  +  E R   K +   + Y     G A          
Sbjct: 789 KAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 848

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
           G  ++++ +       + +                     + +  S +   +  Y   A+
Sbjct: 849 GAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHFPRIGSANASDRAFYERAAI 908

Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVA 544
              + G A +++++A               Q +LQ+  +L         E     ARRV 
Sbjct: 909 NAPIQGAAADIIRRAMVRMDDALASEGLKAQMLLQVHDELVFEAPKKEAEATIEIARRVM 968

Query: 545 N 545
            
Sbjct: 969 E 969


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/598 (17%), Positives = 193/598 (32%), Gaps = 99/598 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMP----- 54
           L +D ET S  P+    V         +A      +      +   D   Q  +P     
Sbjct: 392 LAVDTETDSLFPMQARLVGVSLSLLPGEACYIPLQHGAGGG-LDFADAGGQPQIPLKEAI 450

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L   L D +++ +  N  F+  + ++  GI +           A   G+     +   
Sbjct: 451 ARLKPLLEDPSILKIGQNLKFDMTVLRQH-GIQLKGLDDTMLMSYALDAGVHGHGMDELS 509

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L+         E         + + D  P D   A           Y   D + T  L+
Sbjct: 510 ELHLGHKPISFAEVAGKGK--AQITFDQVPVDRATA-----------YAAEDADVTLRLW 556

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              ER L  +   +   G ++D  ++ +L    +Q+  + +++I
Sbjct: 557 HILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLSGDFSQKMAQYEDEI 616

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA---KDLILNR 281
            +L      +      L   LF    ++    ++ T         +  LA    +L    
Sbjct: 617 YELAGERF-NIGSPKQLGEILFDKQSLEGGRKTK-TGAWSTDADTLEALAAKGHELPQRV 674

Query: 282 LASSGSAILK---LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L   G + LK    + L E ++   GR+        ++ TGR +      QN+P +    
Sbjct: 675 LDWRGLSKLKSTYTDALPEYINPETGRIHTCYSL-ASTSTGRLASTEPNLQNIPVRTED- 732

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  +A  G  L+ AD + IE R+LA IA  + 
Sbjct: 733 -----------------------GRKIRTAFVAEKGNLLISADYSQIELRLLAHIADIEA 769

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             KAFA G DI+  T ++ F  PI+ +    R   K +   + Y     G A        
Sbjct: 770 LKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYGISAFGLANQLGIPRQ 829

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEF 492
             G  + ++ +       + D  +  +H     +                          
Sbjct: 830 EAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIHLPAINSKNPAEKSFMERA 889

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVA 544
           A+   + G+A +++++A     Q +       ++   + +     V E  +    +V 
Sbjct: 890 AINAPIQGSAADIIRRAMIRMPQALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVV 947



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD-TPYFSVGTLCSLM--T 652
           +Q  + DI+   M    +          ++L VHDE++ E P+     +   +  +M   
Sbjct: 895 IQGSAADIIRRAMIRMPQALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVVSRIMSDA 954

Query: 653 KNPSWAKGLPLKAE 666
             P+ A  +PL  +
Sbjct: 955 AAPAVALTVPLDVD 968


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            R+LA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 773 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 953 NEVEKTIPVVRRVME 967


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 93/505 (18%), Positives = 172/505 (34%), Gaps = 85/505 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC 113
            +L   L +  V+ +  N  ++ ++  +    +I  K +  T +L+              
Sbjct: 452 DELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFDDTMLLSYVLDAGQGGHGMDA 508

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L+  +  H T    G   +    K +I        +A           Y   D E T  L
Sbjct: 509 LSERWLGHKTI---GYKDVTGSGKSAIPFAQVAIDKATA---------YAAEDAEVTLRL 556

Query: 174 FKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +  L                ER L  +   +  RG R+D  ++ +L   +AQ    L+ +
Sbjct: 557 WHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRVDRQILSRLSGELAQGAAALEAE 616

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282
           I +L      +      L   LF    +     ++ T +   S   +  LA     L R 
Sbjct: 617 IQELAGENF-NVGSPKQLGEILFDKMSLPGGSKTK-TGQWSTSAQALEDLAAAGHELPRK 674

Query: 283 ASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L   ++ +  R+  +     A+ TGR S      QN+P +   
Sbjct: 675 IVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAM-AATTTGRLSSSDPNIQNIPVRT-- 731

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  +A  G  L+ AD + IE RVLA +A   
Sbjct: 732 ----------------------AEGRKIRTAFVAEPGNVLISADYSQIELRVLAHVANIP 769

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              +AFA+G DI+  T ++ F  PI+ +  E R   K +   + Y     G A       
Sbjct: 770 QLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIER 829

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
           S  G  ++++ +       + D  +AE+                      +  ++     
Sbjct: 830 SEAGDYIRKYFERFPGIKDYMDATKAEAKENGYVTTIFGRRAHYPEIRSSNPQVRAFNER 889

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG 516
            A+   + G+A +++++A       
Sbjct: 890 AAINAPIQGSAADIIRRAMVRMEPA 914


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/615 (17%), Positives = 200/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 389 LAFDTETTSLDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGMVE 438

Query: 51  SAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
             +P  + L  L+    D +V+ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 439 GQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLDA 495

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 496 GTGSHGMDPLSERWLGHTPIPYKDVAGS------GKSAVSFDMVDLDRATA--------- 540

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 541 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSG 600

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I +L      +      L   LF    +     ++ T +   S   + 
Sbjct: 601 DLAQAAAAYEDEIYELAGERF-NIGSPKQLGDILFGKMSLSGASKTK-TGQWSTSAQVLE 658

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++ + +   T     ++ TGR S    
Sbjct: 659 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAMASTSTGRLSSSDP 718

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KLV AD + IE
Sbjct: 719 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLVSADYSQIE 754

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 755 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 814

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 815 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYPDIRA 874

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G+A +++++A               + +LQ+  +L      
Sbjct: 875 SNPQVRAFNERAAINAPIQGSAADIIRRAMIRMEDALAEQNLAARMLLQVHDELIFEVPD 934

Query: 531 VVQEGGSISARRVAN 545
              E      R +  
Sbjct: 935 NEVEKTIPVVRHIME 949


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 96/593 (16%), Positives = 194/593 (32%), Gaps = 113/593 (19%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSL 74
           A+QA +   ++A           T         +  D     L   L D   + V  ++ 
Sbjct: 361 AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPNKLKVGQHAK 420

Query: 75  FERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---K 124
           F+  +          ++          T + +      +       LA  + +H T   +
Sbjct: 421 FDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQ 480

Query: 125 MEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179
              GK      F + ++                +  G Y   D + T  L + L      
Sbjct: 481 DIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRLHQTLFDKLSA 524

Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                  L+D E  L  +   I  +G  +D +L+      +  +   L+ +  ++     
Sbjct: 525 IPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQSIELGNKMIALEREAFEIAGEEF 584

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291
            +      L + L+   G+ ++  +     S      + +LA+D   L ++     ++ K
Sbjct: 585 -NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEE-VLAKLAEDDHRLPKVLMEHRSMSK 642

Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L +     L E ++   GR+  +      + TGR S      QN+P +            
Sbjct: 643 LKSTYTDRLPEQINPRTGRIHTSY-HQAVASTGRLSSSDPNLQNIPVRT----------- 690

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G KL+ AD + IE R++A ++ ++  + AF N 
Sbjct: 691 -------------AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNN 737

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461
            D++  T A+ F   +++V+ +QR   K +   L Y  GA+                +  
Sbjct: 738 LDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDT 797

Query: 462 FSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLIG 500
           +         + D  +A++             L++          +      A+   + G
Sbjct: 798 YFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAERTAINAPMQG 857

Query: 501 TACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           TA +++KKA      W        ++   + +     V+E      R    V 
Sbjct: 858 TAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEIRVH 910


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 108/565 (19%), Positives = 199/565 (35%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + ID ET S       L  +     A +A      + + D P +L    +++ +   L  
Sbjct: 341 IAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLEHDYVDAPEQL----DRALVFEKLQP 396

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L DE +  V  N  ++  +F   +GI +   ++  T + +   N + S      LAL +
Sbjct: 397 LLEDENLKKVGQNLKYDISIFAN-IGITLRGVQF-DTMLESYVFNSVASKHNMDDLALKY 454

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK +    F +  +++                   Y   D + T  L 
Sbjct: 455 LGHKNISFEEIAGKGVKQLTFNQIPLETAA----------------PYAAEDADITLRLH 498

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L              +D E  L      I  +G  ID  L+ +  E +A++  +L+  
Sbjct: 499 QHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKIDELEHK 558

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++       S     L+   F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 559 AHEIAGEPFNLS-SPKQLQALFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 616

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 617 LEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  GKK++ AD + IE R++A ++ +  
Sbjct: 673 ---------------------EEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDTG 711

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA G+DI+  T A+ F+    +V+ +QR   K +   L Y       AK      +
Sbjct: 712 LLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRA 771

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  + +       + +  +A +                      +   +      
Sbjct: 772 EAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERA 831

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 832 AINAPMQGTAADIIKKAMINIAQWI 856



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA------TKNGYDI-VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M N          G  I ++ VHDE+V E  +    S+   +C LM   
Sbjct: 838 QGTAADIIKKAMINIAQWIETETQGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAA 897


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/573 (18%), Positives = 196/573 (34%), Gaps = 112/573 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              IDIET S         +  AE            A     A+ +++ P +L     + 
Sbjct: 350 HFAIDIETTSLD-------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQL----NRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   ++LA    N   +  
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDTMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +                Y   
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499

Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214
           D   T  L++    +L P  + E  L+ ++         + + G R+D   +  L    A
Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFA 559

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + R+ L+   +++ D     +     +   LF   GI     +  T +   S S + ++ 
Sbjct: 560 KTREGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617

Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L    L   G A LK    + L E   +D     T      + TGR S      QN+P
Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G+ L+ AD + IE R++A 
Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
            + +D  + AF +G+D++  T A+     I+ V+ +QR   K +   L Y        + 
Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                      ++Q+ Q       +                           ++ ++ ++
Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                 A+   L G+A +++K A     + + +
Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKVLPK 866


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 196/583 (33%), Gaps = 109/583 (18%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           +  D ET S       L  +     A +A     A+++   P +L    ++ A+ + L  
Sbjct: 381 IAFDSETTSIDAQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQL----DRDAVLNALKP 436

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALN 117
            L D     V  ++ ++  +        I  +     ++L         +      LAL 
Sbjct: 437 ILEDPAKAKVGQHAKYDINVLANA-STPIMVQGVAFDTMLESYVLDSTATRHDMDSLALK 495

Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +  H T   +   GK      F + ++                +  G Y   D + T  L
Sbjct: 496 YLNHSTIRFEDIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRL 539

Query: 174 FKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            + L             L D E  L  +   I   G  +D  L+ +    + ++  +L+ 
Sbjct: 540 HQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELER 599

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              ++       +     L + L+   G  ++  +     S           +D  L ++
Sbjct: 600 KAFEIAGEEFNLA-SPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDYELPKV 658

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL     + L E ++   GR+  +      + TGR S      QN+P +   
Sbjct: 659 LMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPIRT-- 715

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A  G KL+ AD + IE R++A +A ++
Sbjct: 716 ----------------------AEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHLAKDE 753

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AF    D++  T A+ F  P+D+V+ +QR   K +   L Y       AK      
Sbjct: 754 GLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVER 813

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPE 491
                 + ++        T+ +  +A+                     + +  M+     
Sbjct: 814 KEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRKGAER 873

Query: 492 FAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
            A+   + GTA +++K+A  A            + +LQ+  +L
Sbjct: 874 AAINAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQVHDEL 916



 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 18/96 (18%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT----K 619
            RRL   ++       N A  +   R            +Q  + DI+   M         
Sbjct: 852 GRRLYLPEIHAQ----NQAMRKGAERAAINAP------MQGTAADIIKRAMIAVDGWLQD 901

Query: 620 NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
           +G D  I+L VHDE+V E  +     V   L SLM+
Sbjct: 902 SGIDARIILQVHDELVLEVREELINEVSAKLKSLMS 937


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 108/565 (19%), Positives = 204/565 (36%), Gaps = 101/565 (17%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAY----AWDDEPVKLWDRTEQSAMP 54
            + +D ET S       L  V +     +A     A+    + DD      D   +   P
Sbjct: 386 HVAVDTETTSLDAMACDLVGVSLATGPGRACYIPLAHLKDGSSDDG-----DMFSEGLDP 440

Query: 55  SD---------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                      L   L   +V+ +A N  ++ ++  +  GI++       T +L+     
Sbjct: 441 DQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY-GIEVGPFD--DTMLLSYVLDA 497

Query: 106 P-SSLKNACLAL-NFSEHLTKMEE----GKALIARFCKGSIDS-PPYDCTRAN-HVQAWQ 157
                    L+L +        +E    GK+++  F K SI+    Y    A+  ++ W 
Sbjct: 498 GRGKHGMDALSLAHLDHTPIPFKEVAGSGKSMVT-FDKVSIEKASAYAAEDADVTLRLWT 556

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           L         E    +++RL      ER L  +   +  RG  ID  ++ +L   +AQ+ 
Sbjct: 557 LLKARLV--AEKMVTVYERL------ERPLVPVLCRMEARGVEIDRQILSRLSGELAQKA 608

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD- 276
             ++ DI ++    I  +     L   LF    +     ++ T +       +  LA + 
Sbjct: 609 AGIEADIHEMAGEPINIA-SPKQLGELLFGKMELPGGKKTK-TGQWATGAQALEDLAAEG 666

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L R       + KL     + L   ++   GR+  +     ++ TGR+S      QN+
Sbjct: 667 HELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSYAM-ASTTTGRFSSSEPNLQNI 725

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +  +                           +R+  IA++G KLV AD + IE RVLA
Sbjct: 726 PVRTEA------------------------GRKIRTAFIAADGHKLVSADYSQIELRVLA 761

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            +A      +AFA+G DI+  T ++ FN P++ +    R   K +   + Y     G A 
Sbjct: 762 HMADISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYGISAFGLAN 821

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485
                       ++ + +       + D                     + + +S +  M
Sbjct: 822 NLGIDRGEASDYIKMYFERFPGIRDYMDETKKFAREHGYVETIFGRRAHYPEIKSSNPQM 881

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW 510
           +      A+   + G+A +++++A 
Sbjct: 882 RAFNERAAINAPIQGSAADIIRRAM 906


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 111/560 (19%), Positives = 200/560 (35%), Gaps = 100/560 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + ID ET S       L  +     A +A     A+ + D P +L    +++ +   L  
Sbjct: 341 IAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLAHDYIDAPEQL----DKAVVFEKLQP 396

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L DE +  V  N  ++  +F    GI +   ++  T + +   N + S      LAL +
Sbjct: 397 LLEDENLKKVGQNLKYDISIFANA-GICLLGVQF-DTMLESYVFNSVASKHNMDDLALKY 454

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK +    F + S+++                   Y   D + T  L 
Sbjct: 455 LGHKNISFEEIAGKGVKQLTFNQISLETAA----------------PYAAEDADITLRLH 498

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L              +D E  L     TI  +G  ID  L+ +  E +A++  +L+  
Sbjct: 499 QHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKIDELEHK 558

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++       S     L+   F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 559 AHEIAGQAFNLS-SPKQLQELFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 616

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V++  GR+  +     A+ TGR S      QN+P +    
Sbjct: 617 LEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  GKK++ AD + IE R++A ++ +  
Sbjct: 673 ---------------------EEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDKG 711

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA G+DI+  T A+ F+    +V+ +QR   K +   L Y       AK      S
Sbjct: 712 LLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRS 771

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  + +       + +  +A +                      +   +      
Sbjct: 772 EAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERA 831

Query: 493 AVKDKLIGTACELVKKAWRA 512
           A+   + GTA +++KKA   
Sbjct: 832 AINAPMQGTAADIIKKAMIN 851



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA------TKNGYDI-VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M N         +G  I ++ VHDE+V E  +    S+   +C LM   
Sbjct: 838 QGTAADIIKKAMINIANWIETETDGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAA 897


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 90/515 (17%), Positives = 162/515 (31%), Gaps = 86/515 (16%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           D+PV+     E +A  + +   L D TV+ +  N  F+  + ++     I          
Sbjct: 394 DQPVRQPAIAEIAAALNPI---LADPTVLKIFQNGKFDLAVLRRHQMPVIAPIDDTMLIS 450

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
            A+  G      +    L+        ++         +      P D   A        
Sbjct: 451 YAQEAGAHGHGMDELSVLHLGHSPISYDQVTGTGR--NRLPFPQVPIDKATA-------- 500

Query: 159 FGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L+  L P              ER L  +   +   G R+D   + +
Sbjct: 501 ---YAAEDADVTLRLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRR 557

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           +    A     ++ +I +L       +     L   LF   G+     S+ T       +
Sbjct: 558 MSADFALRMADMETEIHQLAGRPFNLA-SPKQLGEVLFDEIGLTGSKRSK-TGAWGTDAA 615

Query: 269 NITQLAKD-------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
            +  +A +        IL+    +       + L E V+   GR+  + Q    + TGR 
Sbjct: 616 TLQAIADESGHALPARILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQM-AITTTGRL 674

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +                              +R   IA  G  L+ AD
Sbjct: 675 SSNEPNLQNIPIRT------------------------EEGSRIRRAFIADPGHVLISAD 710

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA +A       +FANGEDI+  T ++ F  P+  +    R   K +   + 
Sbjct: 711 YSQIELRLLAHVADIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAINFGII 770

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------- 480
           Y     G A+            +  +         + +  + E+                
Sbjct: 771 YGISAFGLARSLAISPGEARQYIDAYFARYPGIRDYMERTKEEARINGFVVTPFGRRCWV 830

Query: 481 -----HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 +   +      A+   L G A +++K+A 
Sbjct: 831 PGIADRNPARRGYAERQAINAPLQGGAADIIKRAM 865


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 408 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 457

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 458 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 514

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 515 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 559

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 560 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 619

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 620 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 677

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 678 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 737

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 738 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 773

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 774 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 833

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 834 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 893

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 894 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 953

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 954 NEVEKTIPVVRRVME 968


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 953 NEVEKTIPVVRRVME 967


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            R+LA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 105/590 (17%), Positives = 189/590 (32%), Gaps = 96/590 (16%)

Query: 6   IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY--- 60
           ID ET S  P+    VG+    +         A     V   D   Q +  + L +    
Sbjct: 359 IDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAAQLSRDTVLARMKLW 418

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFS 119
           L DE+   V  +  ++  +F      DI  +     T + +       +     LA    
Sbjct: 419 LEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              T   E        C        +D    +   A+         D + T  L + L P
Sbjct: 476 HLKTITYEAV------CGKGASQIGFDEVPLDRATAY------AAEDADVTLRLHRTLFP 523

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                          E    ++ Q +   G  ID D + K    +     +L+ +  KL 
Sbjct: 524 KVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELGLRLIELEAEAHKLA 583

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      +    F    + ++  +     S      + +LA+D  L +L      
Sbjct: 584 GQPF-NLGSPKQIGDIFFNQMKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 641

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L + V+   GR+  T     A  TGR +      QN+P +         
Sbjct: 642 LAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT-------- 692

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G  +V AD + IE R++A ++ ++  ++AF
Sbjct: 693 ----------------EEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAF 736

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
             G+D++  T A+ FN    +V+ +QR + KV+   L Y       A           L 
Sbjct: 737 REGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAKLY 796

Query: 459 LQQFSQNVKSTS-TFEDWEQAESHHLWM--------------------QDQYPEFAVKDK 497
           + ++       +   E+  Q+   H ++                    +      A+   
Sbjct: 797 IDRYFARYPGAANYMEETRQSAREHGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAP 856

Query: 498 LIGTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           + GTA +L+K      + W        +L   + +     V +      R
Sbjct: 857 MQGTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELVLEVPQDELAVVR 906



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
            RRL   D+ G       A     R            +Q  + D++   M          
Sbjct: 829 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQGWLEAE 879

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +V+ VHDE+V E P      V   L  LM 
Sbjct: 880 AMRSRLVMQVHDELVLEVPQDELAVVRERLPELMC 914


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 105/616 (17%), Positives = 202/616 (32%), Gaps = 107/616 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  V       +A      + ++D P +L    ++  + + L   L 
Sbjct: 362 DTETTSVHYMKAELVGVSFAIEVGKAAYVPLTHDYEDAPEQL----DKEWVLAQLKPLLE 417

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSE 120
            +T+  +  N  ++  +       DI  +     T + +   N + +      LAL + +
Sbjct: 418 SKTIKKIGQNLKYDANVLSHY---DIALQGIEFDTMIESYCYNSVATRHNMDALALKYLD 474

Query: 121 HLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + T   +   GK      F +  I+   +                Y   D + T  L   
Sbjct: 475 YQTVHFEDVAGKGAKQLTFNQIDIEKAGH----------------YAAEDADITLRLHHA 518

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + P            ++ E  L  +   +   G  ID D++ +    + Q   +L+ +  
Sbjct: 519 IFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEAH 578

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +     L+  LF    I ++  +     S      + +LA D  L ++   
Sbjct: 579 NLAGKSFNLA-SPKQLQQILFEDLKIPVIKKTPKGAPSTAEE-VLQELALDYPLPKVILE 636

Query: 286 GSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              + KL     + L   VS       T      + TGR S      QN+P +       
Sbjct: 637 NRGLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAVTATGRLSSTDPNLQNIPIRS------ 690

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA    K+V  D + IE R++A ++ +   + 
Sbjct: 691 ------------------EQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVT 732

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF+ G+DI+  T A+ F   + +V+ +QR   K +   L Y       AK          
Sbjct: 733 AFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAFGLAKQLHIGRQQAQ 792

Query: 457 LDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAVK 495
               ++ Q      +  ED  Q  S   +++  Y                       A+ 
Sbjct: 793 EYQDKYFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAIN 852

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             + GTA +++KKA  A    +L+   D        ++    +    +  + + ++    
Sbjct: 853 APMQGTAADIIKKAMLAVDSWLLEQNDD-------RIKMTMQVHDELIFEIHQDIVEETT 905

Query: 556 RDVHIVLPSSRRLVYS 571
             +  ++  +  L   
Sbjct: 906 AKLVTLMNDAVELSVP 921



 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654
           Q  + DI+ + M            +   + + VHDE++ E   D    +   L +LM   
Sbjct: 856 QGTAADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDA 915

Query: 655 PSWAKGLPLKAE 666
                 +PL AE
Sbjct: 916 VE--LSVPLIAE 925


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 953 NEVEKTIPVVRRVME 967


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 95/564 (16%), Positives = 175/564 (31%), Gaps = 97/564 (17%)

Query: 39  DEPVKLWDRTEQSAMPS----DLLQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
              V L D      MP     ++L+ L  D +V+ V  N+ F+ ++  +   +       
Sbjct: 378 GHQVDLMDSLGTPQMPVGTALEILEPLFADPSVLKVFQNAKFDLLVLTQAGSVQPAPIDD 437

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
                 A++ G      +    L         +E         +  +     D  RA   
Sbjct: 438 TMLISYAQSAGQHGQGMDELSRLTLDHSPIPYDEVTGT----GRNRVVFSQVDIARAT-- 491

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDL 203
                   Y   D + T  L++ L P            + ER L  +   +   G  +D 
Sbjct: 492 -------PYAAEDADVTLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDA 544

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
           D +  +    AQ    ++ +I KL      +      L   LF   G+     ++     
Sbjct: 545 DDLRAMSIEFAQRMGVIEAEIHKLAGREF-NVGSPKQLGEILFDEMGLPGGKRTKAG-AW 602

Query: 264 ILSHSNITQLAKD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
               S +  LA         IL     +       + L   ++   GR+  + Q    + 
Sbjct: 603 GTDSSVLQDLADQGHDLPARILAWRQLAKLKSTYADALLNQINPATGRVHTSFQM-AVTT 661

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                              +R   +A+ G  L
Sbjct: 662 TGRLSSNDPNLQNIPIRT------------------------EEGGRIRRAFVAAPGHLL 697

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE R+LA +A      +AFA G+DI+  T ++ F  P++ +    R   K + 
Sbjct: 698 VSADYSQIELRLLADVANIPALREAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAIN 757

Query: 437 LALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------- 484
             + Y   A    +            +  +         + +  +AE+            
Sbjct: 758 FGIIYGISAFGLGRQLGIPPGEARGYIDAYFARYPGIRDYMERVKAEARAKGYVTTPFGR 817

Query: 485 -------------MQDQYPEFAVKDKLIGTACELVKKAWRAK----------HQGVLQLW 521
                         ++     A+   L G A +++K+A               + +LQ+ 
Sbjct: 818 RCWVPGIADKSAVRRNYAERQAINAPLQGGAADIIKRAMVRIPAALSDAGLDGRMLLQVH 877

Query: 522 KDLTEGFACVVQEGGSISARRVAN 545
            +L         +  +   R+V  
Sbjct: 878 DELVFEVRKDDADRLAALVRQVME 901



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMK 615
              +   +  +   +   G   ++     +    R Y  +   N  +Q  + DI+   M 
Sbjct: 798 MERVKAEARAKGYVTTPFGRRCWVPGIADKSAVRRNYAERQAINAPLQGGAADIIKRAMV 857

Query: 616 NA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
                 +  G D  ++L VHDE+V E        +  L   
Sbjct: 858 RIPAALSDAGLDGRMLLQVHDELVFEVRKDDADRLAALVRQ 898


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 93/589 (15%), Positives = 201/589 (34%), Gaps = 102/589 (17%)

Query: 2   SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            +   D ET S       +    V   A+ A     A+ ++  P +L     +  + + +
Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQNAYYVPLAHDYEGAPEQL----NREVILAQI 401

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLA 115
              L DE+V  + H+  ++  + +   GI +    W   ++LA    N + +      +A
Sbjct: 402 KPILEDESVKKIGHHLKYDAHVLENH-GIHL--AGWYFDTMLASYVLNSVATRHGMDDVA 458

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  HLT   E   GK    + F +  +++  +                Y   D   T 
Sbjct: 459 RLYLSHLTTTYEQVAGKGAKQKTFNQIPLETAAH----------------YAAEDAHVTY 502

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L++ L             L + E  +  +   + + G  +DL  + +L    +   + L
Sbjct: 503 RLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNL 562

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +  I+++      +      +   LF   G+     +  T +   S S + ++   +   
Sbjct: 563 ENQIMEIAGESF-NVSSPKQVGEVLFEKLGLKGGKKT-TTGQYSTSESVLEKIEHPIAQL 620

Query: 281 RLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L   G + LK    + L +  + D     T      + TGR S      QN+P +    
Sbjct: 621 ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIR---- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  G+ L+ AD + IE R++A ++ ++ 
Sbjct: 677 --------------------AEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEA 716

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF +G+D++  T A+     ++ V+ +QR   K +   L Y        +       
Sbjct: 717 LLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQ 776

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++Q+         +                           ++ ++ ++      
Sbjct: 777 ESQDYIKQYFHRYPGIYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERA 836

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           A+   L G+A +++K A     + +     ++   + +     V E  +
Sbjct: 837 AINAPLQGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVFEVDEDIA 885



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 603 QAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           Q  + DI+   M    K        ++L VHDE+V E  +     +   L  +M
Sbjct: 843 QGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVFEVDEDIADELAPKLAEVM 896


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 110/602 (18%), Positives = 196/602 (32%), Gaps = 119/602 (19%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56
            ID ET S  P    L  + +     Q       + +   P           +P D    
Sbjct: 403 AIDTETTSKDPHAARLVGISLAVTPWQGCYIPVGHNYAGVP---------EQLPLDEVLA 453

Query: 57  -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L  +L  +    V  N  ++  +     GI +       T + +       +     LA
Sbjct: 454 VLKPWLESDAQQKVGQNIKYDMHVLANH-GITLRGV-VDDTMLESYVLEAHRTHGMDALA 511

Query: 116 -LNFSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +      EE  GK   A  F + ++D                    Y   D + T 
Sbjct: 512 GRHLNRTTITYEEVAGKGAKAIGFDQVALDVA----------------TPYAAEDADVTL 555

Query: 172 ELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P  +            E     +   +   G  +D D +    + +A++ ++L
Sbjct: 556 QLHRTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQEL 615

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +    +L      +   T  L   LF   G+ +V  +     S    S + +LA D  L 
Sbjct: 616 ERQAHELAGQPF-NLGSTKQLGEILFERLGLPVVKKTPAGKPST-DESVLEKLALDYPLP 673

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++      + KL     + L E V    GR+  T      + TGR +      QN+P + 
Sbjct: 674 KVLLQWRGLAKLKSTYTDKLPEMVDPKTGRVHTTYS-QAVAITGRLASSDPNLQNIPVRT 732

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G +++ AD + IE R++A I+ 
Sbjct: 733 ------------------------PEGRRIREAFIAPPGHQMMSADYSQIELRIMAHISQ 768

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   +KAFA+GED++  T ++ F  PI +V+ EQR   KV+   L Y       A     
Sbjct: 769 DAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIYGMSAFGLAANLGI 828

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------Y 489
                   + ++       + + +  +A++      +                       
Sbjct: 829 ERGAAQAYIDRYFARYPGVAAYMERTRAQAREQGYVETVFGRRLWLPEIGSSNMGRRQMA 888

Query: 490 PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSIS 539
              A+   + GTA +L+K A    H          + V+Q+  +L         E     
Sbjct: 889 ERAAINAPMQGTAADLIKLAMIDVHAWLRRENLGARLVMQVHDELVLEVPDAEVERLKTD 948

Query: 540 AR 541
             
Sbjct: 949 LP 950



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 17/75 (22%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656
           Q  + D++   M            G  +V+ VHDE+V E PD        +  L T  P+
Sbjct: 898 QGTAADLIKLAMIDVHAWLRRENLGARLVMQVHDELVLEVPD------AEVERLKTDLPA 951

Query: 657 WAKG-----LPLKAE 666
              G     +PL AE
Sbjct: 952 RMAGVAQLSVPLLAE 966


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 953 NEVEKTIPVVRRVME 967


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 953 NEVEKTIPVVRRVME 967


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 108/615 (17%), Positives = 200/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L       S     L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTIS-SPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 179/509 (35%), Gaps = 89/509 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V+ VA N  ++ +L K+     I ++ +  T +++        +     L+
Sbjct: 488 LKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        K ++     D  RA H         Y   D E T  
Sbjct: 545 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDAEVTLR 589

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 590 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLED 649

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S   +  LA     L R
Sbjct: 650 EIYVLAGERF-NIGSPKQLGDILFGKMGLSGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 707

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + +   T     ++ TGR S      QN+P +   
Sbjct: 708 KIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 765

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++   KL+ AD + IE RVLA +A   
Sbjct: 766 ----------------------AEGRKIRTAFISTPRHKLISADYSQIELRVLAHVAEIP 803

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 804 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 863

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 864 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 923

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520
            A+   + G+A +++++A       ++++
Sbjct: 924 AAINAPIQGSAADVIRRAMIKIEPALVEV 952


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/563 (16%), Positives = 178/563 (31%), Gaps = 103/563 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82
            ++A ++                  +        L  YL D+    V  N  ++  +  +
Sbjct: 374 LSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLAR 433

Query: 83  TLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
               DI  K     T + +   N +        LAL + +H T   E            I
Sbjct: 434 Y---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFE-----------EI 479

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189
                     N +   +    Y   D + T  L   L              +D E  L  
Sbjct: 480 AGKGKKQLTFNQIAL-EQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVS 538

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +  +G  ID  L+      I Q   +L++   ++      +      L+  LF   
Sbjct: 539 VLSRMERKGVYIDDMLLSAQSLEIGQRLDELEKAAFEVAGEEF-NMNSPKQLQTILFEKM 597

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303
            + ++  +     S  +   + +LA D  L +L      + KL     + L + ++   G
Sbjct: 598 ELPVIKKTPSGAAST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTG 656

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P +                              
Sbjct: 657 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRR 691

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++ +   + AF+ G+DI+  T A+     I++
Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           V+ E R   K +   L Y       AK            +  + +       + +     
Sbjct: 752 VTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLL 811

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515
                             +  + +   +      A+   + GTA +++KKA     +   
Sbjct: 812 ATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPMQGTAADIIKKAMILVDEWVE 871

Query: 516 ----GVLQLWKDLTEGFACVVQE 534
                 + L   + +     V+E
Sbjct: 872 TEGKDRVNLLMQVHDELVFEVKE 894


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 186/531 (35%), Gaps = 97/531 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE+V+ VA N  ++ +L K+     I +K +  T +++        +     L+
Sbjct: 469 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAHGMDPLS 525

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        + ++     D  RA H         Y   D + T  
Sbjct: 526 EKFLGHTPIPYKDVAGS------GRANVTFDLVDIDRATH---------YAAEDADVTLR 570

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 571 LWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 630

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S S +  LA     L R
Sbjct: 631 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 688

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + +   T     ++ TGR S      QN+P +   
Sbjct: 689 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 746

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 747 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 784

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 785 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 844

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 845 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 904

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
            A+   + G+A +++++A                +++   + +     V++
Sbjct: 905 AAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVED 955


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 104/585 (17%), Positives = 194/585 (33%), Gaps = 123/585 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQSAMPSD 56
           D ET S           Y E A +   ++A D+                   E+  +   
Sbjct: 343 DTETTSLN---------YIE-AELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVLKQ 392

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114
           L   L  E    V  N  ++  +       DI        ++L     N + S      L
Sbjct: 393 LKPLLESEKHKKVGQNLKYDMSVLANY---DIELAGIEFDTMLESYCLNSVASRHDMDTL 449

Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           AL+  +    K EE  GK      F +  +                +    Y   D + T
Sbjct: 450 ALHHLNHVNIKFEEIAGKGKNQLTFDQIEV----------------EQAAPYASEDADIT 493

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L ++L P               E  L  +   +   G  +D  L+L+   L  +  K+
Sbjct: 494 MRLHQKLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLKE 553

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+++  ++      +      L++  +   G+ ++  +     S      + +LA D  L
Sbjct: 554 LEKEAYEIAGKEF-NLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEE-VLQELALDYPL 611

Query: 280 NRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L   +    GR+  +     A+ TGR S      QN+P +
Sbjct: 612 PKLILEHRGLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAA-TGRLSSTEPNLQNIPIK 670

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R+  IA  G K++ AD + IE R++A ++
Sbjct: 671 T------------------------EEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLS 706

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  +KAF  G D++  T A+ F+ P+D+V+  QR   K +   L Y       AK   
Sbjct: 707 QDEGLLKAFEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLIYGMSAFGLAKQID 766

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
           T  +     +  +        T+ +                       +  S +   +  
Sbjct: 767 TDRNTAQDYINTYFARYPGVETYMESTKEKAADLGYVETLYGRRLYLPEIHSKNGMRRKA 826

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKH---------QGVLQLWKDL 524
               A+   + G+A +++K A              + ++Q+  +L
Sbjct: 827 AERTAINAPMQGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDEL 871



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 603 QAISRDILCEGMKNATK-----NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
           Q  + DI+   M    K      G  +++ VHDE+V E  +     +   +  LM
Sbjct: 837 QGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDELVFEVEEDKLELAQKEIPKLM 891


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 192/565 (33%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A      + +   P +  D+T        L  
Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 399

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 502 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+        A+ TGR S      QN+P +    
Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTNYHQANAA-TGRLSSSEPNLQNIPIRT--- 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y       A+       
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           Q  + DI+ + M N        T+    +++ VHDE+V E       ++   +C+LM + 
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/563 (16%), Positives = 178/563 (31%), Gaps = 103/563 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82
            ++A ++                  +        L  YL D+    V  N  ++  +  +
Sbjct: 374 LSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLAR 433

Query: 83  TLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
               DI  K     T + +   N +        LAL + +H T   E            I
Sbjct: 434 Y---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFE-----------EI 479

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189
                     N +   +    Y   D + T  L   L              +D E  L  
Sbjct: 480 AGKGKKQLTFNQIAL-EQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVS 538

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +  +G  ID  L+      I Q   +L++   ++      +      L+  LF   
Sbjct: 539 VLSRMERKGVYIDDMLLSAQSVEIGQRLDELEKAAFEVAGEEF-NMNSPKQLQTILFEKM 597

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303
            + ++  +     S  +   + +LA D  L +L      + KL     + L + ++   G
Sbjct: 598 ELPVIKKTPSGAAST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTG 656

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P +                              
Sbjct: 657 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRR 691

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++ +   + AF+ G+DI+  T A+     I++
Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           V+ E R   K +   L Y       AK            +  + +       + +     
Sbjct: 752 VTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLL 811

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515
                             +  + +   +      A+   + GTA +++KKA     +   
Sbjct: 812 ATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPMQGTAADIIKKAMILVDEWVE 871

Query: 516 ----GVLQLWKDLTEGFACVVQE 534
                 + L   + +     V+E
Sbjct: 872 TEGKDRVNLLMQVHDELVFEVKE 894


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 186/531 (35%), Gaps = 97/531 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE+V+ VA N  ++ +L K+     I +K +  T +++        +     L+
Sbjct: 469 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAHGMDPLS 525

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        + ++     D  RA H         Y   D + T  
Sbjct: 526 EKFLGHTPIPYKDVAGS------GRANVTFDLVDIDRATH---------YAAEDADVTLR 570

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 571 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 630

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S S +  LA     L R
Sbjct: 631 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 688

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + +   T     ++ TGR S      QN+P +   
Sbjct: 689 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 746

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 747 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 784

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 785 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 844

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 845 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 904

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
            A+   + G+A +++++A                +++   + +     V++
Sbjct: 905 AAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVED 955


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/540 (19%), Positives = 187/540 (34%), Gaps = 106/540 (19%)

Query: 46  DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D T +  +P +++L +L+    D     +A N+ ++  +             +  T + +
Sbjct: 389 DLTAEPQLPLAEVLAFLKPWFEDSDSPKIAQNAKYDLHVMANH--DVWVKGLFEDTMLAS 446

Query: 101 RTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAW 156
                        LAL   + +  K EE  GK      F +  ID+     T+       
Sbjct: 447 YILEAHKPHGMDALALRWLNYNTIKYEEVAGKGASQITFDQVPIDT----ATK------- 495

Query: 157 QLFGEYCKRDVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDL 205
                Y   D E T  L   L      +P       D E     +   +   G  ID D 
Sbjct: 496 -----YAAEDAEVTLRLAHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDK 550

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           +      IA + K ++E   +L  G   +      +   LF   G+ +V  +     S  
Sbjct: 551 LEAQSAEIADKLKLIEEQAFELAGGSF-NLNSPKQIGELLFDKLGLPVVKKTASGAPST- 608

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGR 319
               +++LA+D  L        ++ KL     + L   V++  GR+         + TGR
Sbjct: 609 DEEVLSKLAEDYPLPAKLLEHRSLAKLKSTYTDKLPRMVNARTGRVHTNYA-QAVAVTGR 667

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +      QN+P +                              VR   IA+ G  LV A
Sbjct: 668 LASNDPNLQNIPVRT------------------------AEGRRVREAFIAAPGCVLVSA 703

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A I+G++  I AF  G DI+  T ++ F   +++V+ + R   KV+   L
Sbjct: 704 DYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGL 763

Query: 440 GYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLW 484
            Y       A           L + ++       + F D  +A++             LW
Sbjct: 764 IYGMSAFGLAGNLGITREAAKLYIDRYFARYPGVAKFMDNVRAQAKEDGFVQTVFGRRLW 823

Query: 485 MQDQ----------YPEFAVKDKLIGTACELVKKAWRAK----------HQGVLQLWKDL 524
           + +               A+   + GT+ +L+K A               + ++Q+  ++
Sbjct: 824 LPEIKSPNGPRRAGAERAAINAPMQGTSADLIKMAMVELSAWLKAEKLNSKMIMQVHDEV 883


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 392 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 441

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 442 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 498

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 499 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 543

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 544 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 603

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 604 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 661

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 662 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 721

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 722 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 757

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 758 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 817

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 818 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 877

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 878 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 937

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 938 NEVEKTIPVVRRVME 952


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 195/565 (34%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A     A+ +   P +L    ++      L  
Sbjct: 345 IAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRP 400

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D+ V  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 401 ILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSVASRHDMDGLALKY 458

Query: 119 SEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     +   GK      F +  +                ++   Y   D + T  L 
Sbjct: 459 LGHKNIGFEDIAGKGAKQLTFNQIPL----------------EVAAPYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 563 AYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 620

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 621 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 677 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y       A+      +
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 835

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 836 AINAPMQGTAADIIKKAMINIAQWI 860



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617
            RRL   +++   +          R            +Q  + DI+ + M N        
Sbjct: 813 GRRLYLPEIRDRNAMRRQGA---ERAAINAP------MQGTAADIIKKAMINIAQWIKTE 863

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           T+    +++ VHDE+V E       ++   +C LM K 
Sbjct: 864 TQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 195/565 (34%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A     A+ +   P +L    ++      L  
Sbjct: 345 IAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRP 400

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D+ V  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 401 ILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSVASRHDMDGLALKY 458

Query: 119 SEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     +   GK      F +  +                ++   Y   D + T  L 
Sbjct: 459 LGHKNIGFEDIAGKGAKQLTFNQIPL----------------EVAAPYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 563 AYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 620

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 621 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 677 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y       A+      +
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 835

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 836 AINAPMQGTAADIIKKAMINIAQWI 860



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617
            RRL   +++   +          R            +Q  + DI+ + M N        
Sbjct: 813 GRRLYLPEIRDRNAMRRQGA---ERAAINAP------MQGTAADIIKKAMINIAQWIKTE 863

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           T+    +++ VHDE+V E       ++   +C LM K 
Sbjct: 864 TQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 197/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L   L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 514 GTGSHGMNPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952

Query: 531 VVQEGGSISARRVAN 545
              E      R V  
Sbjct: 953 NEVEKTIPVVRHVME 967


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/554 (19%), Positives = 190/554 (34%), Gaps = 92/554 (16%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A     A+ +   P +L    ++      L  
Sbjct: 345 MAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAPQQL----DKQTALEKLRP 400

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +     GI +    +  T + +   N + S      LAL +
Sbjct: 401 ILEDAKLKKVGQNLKYDISVLANA-GIQLQGVVF-DTMLESYVFNSVASRHDMDGLALKY 458

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             H     E            I          N +Q  +    Y   D + T  L + L 
Sbjct: 459 LGHKNIAFE-----------DIAGKGAKQLTFNQIQL-ETAAPYAAEDADITLRLHQHLW 506

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P            +D E  L  +   I  +G  ID  L+ +  + +A++  +L+     +
Sbjct: 507 PRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKAYDI 566

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  S     L++  F   G  ++  +     S      + +LA D  L ++     
Sbjct: 567 AGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVILEHR 624

Query: 288 AILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +        
Sbjct: 625 SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT------- 676

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+K++ AD + IE R++A ++ +   +KA
Sbjct: 677 -----------------EEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKA 719

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA G+DI+  T A+ F T  D V+ EQR   K +   L Y       A+      +    
Sbjct: 720 FAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQT 779

Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496
            +  +         + +  +A +                      +   +      A+  
Sbjct: 780 YIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINA 839

Query: 497 KLIGTACELVKKAW 510
            + GTA +++KKA 
Sbjct: 840 PMQGTAADIIKKAM 853



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M +        T+    +++ VHDE+V E       ++   +C LM K 
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 105/612 (17%), Positives = 195/612 (31%), Gaps = 118/612 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54
            +D ET S   L           A I   +++ +                   +P     
Sbjct: 354 ALDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTVL 403

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L D +   +  +  ++R +F    GID+       T + +    +      A L
Sbjct: 404 ERLKPWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYA-HDTMLQSYVLEVHRPHNLASL 461

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G+  I+    C       P+           +    Y   D + T +
Sbjct: 462 AER--------HTGRTGISYEDLCGKGAKQIPFAQVPV------EQAAAYSCEDSDQTLD 507

Query: 173 LFKRLIPLSDGE---RDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           + + L PL + +   R ++ L+         I   G  ID   + +    + Q   +L++
Sbjct: 508 VHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRLEQ 567

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +   +      +      L    F   G+ +V  +  T         + +LA+D  L   
Sbjct: 568 EAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 625

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL     + L +      GR+         + TGR S      QN+P +   
Sbjct: 626 ILEHRSLSKLKGTYTDKLGQLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT-- 682

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +  AD + IE R++A ++G+D
Sbjct: 683 ----------------------AEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDD 720

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             ++AF  G D++  T A+ F   +D+VS EQR   KV+   L Y       A+      
Sbjct: 721 ALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDN 780

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 + ++ Q       + D  +A +                      +   +     
Sbjct: 781 KAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAER 840

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + GTA +L+KKA  A         + + +     V     +    V  +P    
Sbjct: 841 AAINAPMQGTAADLIKKAMVAV--------QAVLDADKPQVLMIMQVHDELVFELPEE-- 890

Query: 552 RRHKRDVHIVLP 563
                 +   +P
Sbjct: 891 --ESGWLRTEVP 900


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/544 (17%), Positives = 182/544 (33%), Gaps = 99/544 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L + L D +++ +A N  ++ ++ ++     I +  +  T +++        S     L+
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             +  H     K   G        K ++     D  RA           Y   D + T  
Sbjct: 509 ERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA---------YAAEDADVTLR 553

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              ER L  +   + +RG  +D  ++ +L   +AQ     ++
Sbjct: 554 LWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYED 613

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L             L   LF   G+     ++ T +   S   +  LA +   L R
Sbjct: 614 EIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLEDLAAEGHPLPR 671

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   ++   +   T     ++ TGR S      QN+P +   
Sbjct: 672 KIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRT-- 729

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IA  G KL+ AD + IE RVLA +A   
Sbjct: 730 ----------------------AEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIA 767

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 768 QLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPR 827

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
              G  ++ + +       + +                     +    + +  ++     
Sbjct: 828 EEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNER 887

Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            A+   + G A +++++A               + +LQ+  +L         E      R
Sbjct: 888 AAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVR 947

Query: 542 RVAN 545
           RV  
Sbjct: 948 RVME 951


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/593 (16%), Positives = 193/593 (32%), Gaps = 113/593 (19%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSL 74
           A+QA +   ++A           T         +  D     L   L D   + V  ++ 
Sbjct: 365 AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPNKLKVGQHAK 424

Query: 75  FERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---K 124
           F+  +          ++          T + +      +       LA  +  H T   +
Sbjct: 425 FDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLNHTTVSFQ 484

Query: 125 MEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179
              GK      F + ++                +  G Y   D + T  L + L      
Sbjct: 485 DIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRLHQTLFEKLSA 528

Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                  L+D E  L  +   I  +G  +D DL+      +  +   L+ +  ++     
Sbjct: 529 IPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQSIELGNKMVALEREAFEIAGEEF 588

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291
            +      L + L+   G+ ++  +     S      + +LA+D   L ++     ++ K
Sbjct: 589 -NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEE-VLAKLAEDDHRLPKVLMEHRSMSK 646

Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L +     L E ++   GR+  +      + TGR S      QN+P +            
Sbjct: 647 LKSTYTDRLPEQINPRTGRIHTSY-HQAVASTGRLSSSDPNLQNIPVRT----------- 694

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G KL+ AD + IE R++A ++ ++  + AF N 
Sbjct: 695 -------------AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNN 741

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461
            D++  T A+ F   +++V+ +QR   K +   L Y  GA+                +  
Sbjct: 742 LDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDT 801

Query: 462 FSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLIG 500
           +         + D  +A++             L++          +      A+   + G
Sbjct: 802 YFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAERTAINAPMQG 861

Query: 501 TACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           TA +++KKA      W        ++   + +     V+E      R    V 
Sbjct: 862 TAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEIRVH 914


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/533 (18%), Positives = 178/533 (33%), Gaps = 91/533 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L DE V+ +A N  ++ +L K+  G+ + S             G  +   +     
Sbjct: 469 LKDLLEDEAVLKIAQNLKYDYLLMKRH-GVVMQSFDDTMLISYVLEAGKTTHGMDTLSER 527

Query: 117 NFSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                    K   G        K SI     D  +A           Y   D + T  L+
Sbjct: 528 WLGHTPIAYKDVAGS------GKSSITFDFVDIDKATA---------YAAEDADVTLRLW 572

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              ER L  +   + +RG  +D  ++ +L   +AQ+    +E++
Sbjct: 573 MVLKPRLAAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEEEV 632

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283
            +L      +      L   LF   G+     ++ T +   S   +  LA +   L R  
Sbjct: 633 YQLAGERF-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQVLEDLAAEGAELPRKI 690

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L   V    +   T     ++ TGR S      QN+P +     
Sbjct: 691 VDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRT---- 746

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R+  I++ G KL+ AD + IE RVLA +A     
Sbjct: 747 --------------------AEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIPQL 786

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
             AF NG DI+  T ++ F  P++ +  E R   K +   + Y     G A       S 
Sbjct: 787 RSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSE 846

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
            G  ++++ +       + +                     + +  S +  M+      A
Sbjct: 847 AGEYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPSMKAFNERAA 906

Query: 494 VKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISA 540
           +   + G+A +++++A       +       ++   + +     V+EG     
Sbjct: 907 INAPIQGSAADIIRRAMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKT 959


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/602 (17%), Positives = 201/602 (33%), Gaps = 122/602 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSD----- 56
           D+ET     L       Y E A I   ++A              D T    +P +     
Sbjct: 330 DLET---NNLD------YIE-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLAR 379

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L   L D     V  N  F+  +     GI++   R   + + +      +       LA
Sbjct: 380 LKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIR-HDSMLESYVLDSTATRHNMDSLA 437

Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L + +  T   +M  GK      F + +I+                    Y   D + + 
Sbjct: 438 LKYLQRTTITYEMVAGKGAKQLPFNQVTIEKAA----------------PYAAEDADISL 481

Query: 172 ELFKRLIPLSDGERDLWLLDQ-----------TINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L     P    E  L  L Q            +   G +++ + +    + +A   K+L
Sbjct: 482 QLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLKRL 541

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +++  +L       +     ++  L+    + +   +  T +   + + + +LA D  L 
Sbjct: 542 EQEAFELAGESFNLA-SPKQIQAILYEKLKLPVTRKTP-TGQPSTAETVLQELALDYPLP 599

Query: 281 RLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +L      + KL +     L   V+S  GR+  +      + TGR S      QN+P + 
Sbjct: 600 QLLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRS 658

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G +LV AD + IE R++A ++ 
Sbjct: 659 ------------------------TEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSE 694

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKT 450
           ++  + AF   EDI+  T  + F TP++ V+ EQR   K +   L Y   A         
Sbjct: 695 DEGLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHGLGRQLGI 754

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
             +     ++++ Q       + +                       +  S     ++Q 
Sbjct: 755 NRTAAQHYIERYFQRYPGVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQTQRRNQA 814

Query: 490 PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSIS 539
              A+   + G+A +++K+A               + ++Q+  +L    A    E    +
Sbjct: 815 ERTAINAPMQGSAADIIKRAMIHADRWLQEQKANARMIMQVHDELVFEVAEDKLEATIRA 874

Query: 540 AR 541
            R
Sbjct: 875 IR 876


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/543 (18%), Positives = 182/543 (33%), Gaps = 96/543 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +V+ +A N  ++ ++  +  G+D+               G P       LA 
Sbjct: 470 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GVDVAPFDDTMLISYVLDAGTPHGHGMDALAE 528

Query: 117 NFSEH---LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            +  H     K   G        K S+     D  +A           +   D + T  L
Sbjct: 529 KWLGHTPLQLKDVTGS------GKSSVGFDQVDIDKATA---------HAAEDADVTLRL 573

Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L+E+
Sbjct: 574 WLVLKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEE 633

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282
           I +L    I +      L   LF   G+     ++ T +   S   +  LA +   L R 
Sbjct: 634 IYQLIGERI-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQLLEDLAAEGHELPRK 691

Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                 + KL     + L   +  D +   T     A+ TGR S      QN+P +    
Sbjct: 692 IVDWRQLTKLKSTYTDALPGFIHPDTKRVHTSYALAATTTGRLSSSDPNLQNIPVRT--- 748

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  I     +LV AD + IE RVLA +A    
Sbjct: 749 ---------------------AEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQ 787

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AFA+G DI+  T ++ FN P++ +  E R   K +   + Y     G A        
Sbjct: 788 LRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPRE 847

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
             G  ++++ +       + +                     +    S +  ++      
Sbjct: 848 EAGNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSLRAFNERA 907

Query: 493 AVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
           ++  +L GTA +++++A     +           +LQ+  +L         E      R 
Sbjct: 908 SINARLQGTAADIIRRAMIRMEEALERAGLSARMLLQVHDELIFETVEAEVEATIPVVRH 967

Query: 543 VAN 545
           V  
Sbjct: 968 VME 970


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRA 892

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 953 NEVEKTIPVVRRVME 967


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/615 (17%), Positives = 200/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S   A L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMAPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/632 (17%), Positives = 195/632 (30%), Gaps = 119/632 (18%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLC------AYA------------WDDEPVKLW 45
            + ID ET S  P+        AE   ++LC      AY             +    +   
Sbjct: 424  IAIDTETSSLDPMQ-------AELVGLSLCLAPGRAAYVPLRHRGEGAGDLFGGADLVPG 476

Query: 46   DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                   + + L   L    V+ +A N+ F++++  +  GI +               G 
Sbjct: 477  QLDSDETL-ARLKPMLEAPDVLKIAQNAKFDQLVLAQ-RGIRLAPVDDTLLLSYVLDAGR 534

Query: 106  PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                 +      F     +          F    I        +A          EY   
Sbjct: 535  TDHGMDVLAEKYFGHRPIQFGAVAGSGRTF----IGFARVALDKAT---------EYSAE 581

Query: 166  DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            D + T  L++ L P              ER +      +  RG  ID  ++ +L    AQ
Sbjct: 582  DADVTLRLWRVLKPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSRLSGEFAQ 641

Query: 216  ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
            +  +L+  I +L      +      L   LF   G+     +  T     +   +  LA+
Sbjct: 642  DMARLEAVIFELAGESF-NLGSPKQLGDILFGKMGLAGARKT-ATGAWSTAAGVLDDLAE 699

Query: 276  D------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                    IL+    S       + L   V+   GR+  +     A+ TGR S      Q
Sbjct: 700  QGVPLAARILDWRQLSKLKSTYTDALPSYVNPETGRVHTSYAL-AATTTGRLSSSEPNLQ 758

Query: 329  NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            N+P                            A   +R   IA  G+KL+ AD + IE R+
Sbjct: 759  NIP------------------------VRNEAGRKIRKAFIAPPGRKLISADYSQIELRL 794

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
            LA IA       AFA   DI+  T ++ F  P++ +  E R   K +   + Y     G 
Sbjct: 795  LAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYGISAFGL 854

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF----- 492
            A          G  ++++ +       + D  +  +            +  YP       
Sbjct: 855  ANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIFGRKCHYPRITASNP 914

Query: 493  ---------AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQ 533
                     A+   + G+A +++++A               Q +LQ+  +L         
Sbjct: 915  SERAFNERAAINAPIQGSAADIIRRAMVRMDEALEKAGLSAQMLLQVHDELVFEAPDEEI 974

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
            +      R+V         +    + +   ++
Sbjct: 975  DATIDVVRKVMVDAPHPFLQLAVPLQVDAKAA 1006


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  +A      + +   PV+L DRT      + L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTH---ALAQLAPLLT 415

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  V  +  ++  + ++                    +G      ++          
Sbjct: 416 DPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+     +    +         D + T  L   L P   
Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGPKLA 522

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + +    +++      +   +L    
Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 582

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S  +   +  +A    L R+      + K
Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPST-NEDALEAIADQHELPRVILEYRGLSK 640

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E +    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AFA+G
Sbjct: 691 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASG 735

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 736 TDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 856 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 889



 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M               ++L VHDE+V E       + +  + + M 
Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 910


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 197/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L   L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMNPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      R V  
Sbjct: 937 NEVEKTIPVVRHVME 951


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/503 (18%), Positives = 171/503 (33%), Gaps = 81/503 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L DE V+ VA N  ++ +L K+  G+ + S             G  +   +   
Sbjct: 470 ERLKDLLEDEAVLKVAQNLKYDYLLMKRH-GVVMRSFDDTMLISYVLEAGKTTHGMDTLS 528

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                      ++         K SI     +  +A           Y   D + T  L+
Sbjct: 529 ERWLGHTPIAYKDVTGS----GKSSITFDFVNIDKATA---------YAAEDADVTLRLW 575

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              ER L  +   + +RG  +D  ++ +L   +AQ+    +E+I
Sbjct: 576 MALKPRLVSERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEI 635

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283
            +L      +      L   LF   G+     ++ T +   S   +  LA +   L R  
Sbjct: 636 YELAGERF-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQVLEDLAAEGAELPRKI 693

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L   +  + +   T     ++ TGR S      QN+P +     
Sbjct: 694 VDWRQLTKLKSTYTDALPSYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRT---- 749

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R+  I++ G KL+ AD + IE RVLA +A     
Sbjct: 750 --------------------AEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIPQL 789

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
             AF NG DI+  T ++ F  P++ +  E R   K +   + Y     G A       S 
Sbjct: 790 RNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSE 849

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------A 493
            G  ++++ +       + +  +A +            +  YPE               A
Sbjct: 850 AGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPSVKAFNERAA 909

Query: 494 VKDKLIGTACELVKKAWRAKHQG 516
           +   + G+A +++++A       
Sbjct: 910 INAPIQGSAADIIRRAMIRIEPA 932


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 186/531 (35%), Gaps = 97/531 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE+V+ VA N  ++ +L K+     I +K +  T +++        +     L+
Sbjct: 204 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAHGMDPLS 260

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        + ++     D  RA H         Y   D + T  
Sbjct: 261 EKFLGHTPIPYKDVAGS------GRANVTFDLVDIDRATH---------YAAEDADVTLR 305

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 306 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 365

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S S +  LA     L R
Sbjct: 366 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 423

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + +   T     ++ TGR S      QN+P +   
Sbjct: 424 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 481

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 482 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 519

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 520 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 579

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 580 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 639

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
            A+   + G+A +++++A                +++   + +     V++
Sbjct: 640 AAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVED 690


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/598 (17%), Positives = 190/598 (31%), Gaps = 114/598 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDL------ 57
            +D ET S   +           A I   +++                  P  L      
Sbjct: 353 ALDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEVL 402

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113
                +L D     +  +  ++R +F      DI  + +   T + +    +      A 
Sbjct: 403 ARLKPWLEDARYPKLGQHVKYDRHVFANH---DIDVRGYVHDTMLQSYVLEVHKPHGLAS 459

Query: 114 LALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           LA            G+  I+    C       P+     +   A+         D + T 
Sbjct: 460 LAER--------HTGRTGISYEDLCGKGAHQIPFAQVPVDKAAAYS------CEDSDQTL 505

Query: 172 ELFKRLIPLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++   L PL    D  R ++ L+         I   G  ID   + +    + Q   +L+
Sbjct: 506 DVHLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLE 565

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            +  ++       S     L    F   G+ +V  +  T         + +LA+D  L  
Sbjct: 566 TEAYEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPA 623

Query: 282 LASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 ++ KL     + L++ A+   GR+         + TGR S      QN+P +  
Sbjct: 624 KLLEHRSLTKLKGTYTDKLAQLALPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT- 681

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A  G  +  AD + IE R++A I+G+
Sbjct: 682 -----------------------AEGRRVREAFVAPPGCVIASADYSQIELRIMAHISGD 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              + AF  G D++  T A+ F   +D+V+ EQR   KV+   L Y       AK     
Sbjct: 719 HALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMSSFGLAKNLGIE 778

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YP 490
                  + ++ Q       + D  +A++      +                        
Sbjct: 779 TKAAAAYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGRRLYLPEINSPNGPRRAGAE 838

Query: 491 EFAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
             A+   + GTA +L+K A  A       H+  +++   + +     + EG     R 
Sbjct: 839 RAAINAPMQGTAADLIKLAMVAVQKELDAHKPGIKMIMQVHDELVFELPEGEVDWLRG 896


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/598 (17%), Positives = 198/598 (33%), Gaps = 110/598 (18%)

Query: 7   DIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET     S   +  V       +A     A+ +   P +L    ++S +   L   L 
Sbjct: 357 DTETTSLDYSKAQIVGVSFAVTPGKAAYVPLAHDYPGVPDQL----DRSEILEKLRPLLE 412

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNF 118
           +     +  N  ++  +     GI +       T + +      ++       A   L  
Sbjct: 413 NPRKAKLGQNLKYDTHVLANH-GIALRGIA-HDTMLESYVLNSTATKHNMDDLAKEYLGV 470

Query: 119 SEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-- 175
                +   GK      F + SID                    Y   D + T +L +  
Sbjct: 471 ETIHYEDVAGKGAKQIGFQEVSIDQAA----------------PYAAEDADITLQLHQVL 514

Query: 176 --------RLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                   RL+ L SD E  L  +   I + G  ID  ++ +    ++ +   L++    
Sbjct: 515 NAKLAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQHAHD 574

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      ++  L+    + ++  +     S    S + +LA D  L +L    
Sbjct: 575 LAGQTF-NLGSPKQIQDILYDQQKLPVLKKTPKGQPST-EESVLQELALDYPLPKLILEY 632

Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            ++ KL     + L + +    GR+  +     A+ TGR S      QN+P +       
Sbjct: 633 RSLSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIAA-TGRLSSSDPNLQNIPIRS------ 685

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  GKK+V AD + IE R++A ++ ++  +K
Sbjct: 686 ------------------EEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLK 727

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF+  +D++  T A+ F    ++V+ + R   K +   L Y       A+      S   
Sbjct: 728 AFSEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINFGLIYGMSSFGLAQQLGLSRSQAQ 787

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             +  +         + D                       +  S +   +      A+ 
Sbjct: 788 SYIDLYFARYPGVKNYMDRIREQAREQGYIETLFGRRLYLPEINSRNAARRQYAERTAIN 847

Query: 496 DKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARRV 543
             + GTA +++K+A  A  Q           ++Q+  +L    A    +  +   R +
Sbjct: 848 APMQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVHDELVFEIAEEHVDDCAAKIRSI 905


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/581 (18%), Positives = 200/581 (34%), Gaps = 113/581 (19%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       +  V     A +A      + +   P +L    +  A+ +DL   L 
Sbjct: 320 DTETTSLDYLEARIVGVSFAVKAGEAAYLPLNHDYPGAPDQL----DFDAVMADLKPLLE 375

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS-SLKNACLALNFSE 120
           D T + V  N  ++R +    L  DI  +     T + +      +       LA  + +
Sbjct: 376 DPTKLKVGQNLKYDRHVL---LNHDINLQGIAHDTMLESYVLDSTATRHDMDSLAKKYLD 432

Query: 121 HLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             T   +   GK      F +  +                +    Y   D + T +L + 
Sbjct: 433 RDTIHFEDIAGKGKKQLTFNQIGL----------------EEAAPYAAEDADITLQLHET 476

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P            S+ E  L  +  T+   G  ID+ ++    + +A +  +L++   
Sbjct: 477 LWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQAH 536

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284
           +       +      L+  L+    + +   +     S      +  LA D   L ++  
Sbjct: 537 ESAGQTF-NLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEE-VLQGLADDGYELPQIIM 594

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   V+   GR+  +      + TGR S      QN+P +  +  
Sbjct: 595 QYRGLSKLKSTYTDKLPLQVNKSSGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRSEN-- 651

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +ASNG  L+ AD + IE R++A ++G++  
Sbjct: 652 ----------------------GRRIREAFVASNGYTLLAADYSQIELRIMAHLSGDESL 689

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454
           +KAFA GEDI+  T ++ F+  ++ VS +QR   K +   L Y   A    K        
Sbjct: 690 LKAFAAGEDIHRHTASEIFDIALEDVSSDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQ 749

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFA 493
               +Q +         + D  + ++                          +      A
Sbjct: 750 AADYMQTYFDRYPGVRQYMDNTREQAKEQGYVETIFGRRLYLPEINSSNGMRRQYAERTA 809

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +   + G+A +++K+A  A H          + ++Q+  +L
Sbjct: 810 INAPMQGSAADIIKRAMIAIHSWLSEADTGIRMIMQVHDEL 850


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  +A      + +   PV+L DRT      + L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTH---ALAQLAPLLT 415

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  V  +  ++  + ++                    +G      ++          
Sbjct: 416 DPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+     +    +         D + T  L   L P   
Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGPKLA 522

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + +    +++      +   +L    
Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 582

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S    + +  +A    L R+      + K
Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 640

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E +    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AFA+G
Sbjct: 691 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASG 735

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 736 TDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 856 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 889



 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M               ++L VHDE+V E       + +  + + M 
Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 910


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  +A      + +   PV+L DRT      + L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTH---ALAQLAPLLT 415

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  V  +  ++  + ++                    +G      ++          
Sbjct: 416 DPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+     +    +         D + T  L   L P   
Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGPKLA 522

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + +    +++      +   +L    
Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 582

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S  +   +  +A    L R+      + K
Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPST-NEDALEAIADQHELPRVILEYRGLSK 640

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E +    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AFA+G
Sbjct: 691 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASG 735

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 736 TDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 856 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 889



 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M               ++L VHDE+V E       + +  + + M 
Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 910


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 180/508 (35%), Gaps = 89/508 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE+V+ VA N  ++ +L K+     I ++ +  T +++        +     L+
Sbjct: 36  LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 92

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        K ++     D  RA H         Y   D + T  
Sbjct: 93  EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 137

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 138 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLED 197

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S S +  LA     L R
Sbjct: 198 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 255

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V  + +   T     ++ TGR S      QN+P +   
Sbjct: 256 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 313

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 314 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 351

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 352 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 411

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 412 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 471

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            A+   + G+A +++++A       + Q
Sbjct: 472 AAINAPIQGSAADVIRRAMIKMEPALAQ 499


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/598 (17%), Positives = 188/598 (31%), Gaps = 114/598 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDLLQY--- 60
            +D ET S   L           A I   +++ +                P  L      
Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398

Query: 61  ------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                 L D     +  +  ++R +F    GI +       T + +    +        L
Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLTSL 456

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G+  I+    C       P+     +   A+         D + T +
Sbjct: 457 AER--------HTGRTGISYEDLCGKGAKQIPFAQVPVDKAAAYS------CEDSDQTLD 502

Query: 173 LFKRLIPLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           + + L P     D  R ++ L+         I   G  ID   +      + Q   +L++
Sbjct: 503 VHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQ 562

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +   +      +      L    F   G+ +V  +  T         + +LA+D  L   
Sbjct: 563 EAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 620

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL     + LS       GR+         + TGR S      QN+P +   
Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT-- 677

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +  AD + IE R++A I+G++
Sbjct: 678 ----------------------PEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AF  G D++  T A+ F   +D+VS EQR   KV+   L Y       AK      
Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIET 775

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 + ++ Q       + +  +A++                      +   +     
Sbjct: 776 KAAAAYIDRYFQRYPGVKQYMEETKAQAKARGYVETVFGRRLYLPEINSPNGPRRGAAER 835

Query: 492 FAVKDKLIGTACELVKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            A+   + GTA +L+KKA         A+   VL +   + +     + EG     RR
Sbjct: 836 AAINAPMQGTAADLIKKAMVAVQGELDARKPEVLMI-MQVHDELVFELPEGEVDWLRR 892


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/595 (17%), Positives = 200/595 (33%), Gaps = 116/595 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L     + 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAQDAYYVPLAHTYENAPQQL----NRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   ++LA    N   +  
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDTMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +                Y   
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVATH----------------YAAE 499

Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214
           D   T  L++    +L P  + E  L+ ++         + + G R+D   +  L    A
Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFA 559

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +  + L+   +++ D     +     +   LF   GI     +  T +   S S + ++ 
Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617

Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L    L   G A LK    + L E   +D     T      + TGR S      QN+P
Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G+ L+ AD + IE R++A 
Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
            + +D  + AF +G+D++  T A+     I+ V+ +QR   K +   L Y        + 
Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                      ++Q+ Q       +                           ++ ++ ++
Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
                 A+   L G+A +++K A     + +     +L   + +     V +  +
Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDQNIA 888


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/573 (16%), Positives = 185/573 (32%), Gaps = 105/573 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ ++  P +L    ++ A+   L   L D     V  N+ ++  +        
Sbjct: 364 AAYVPLAHDYEGAPAQL----DRDAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
                   T + +      +       LA  + +H T   E   GK      F +  +D 
Sbjct: 420 AMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQIDLDK 479

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
                            G Y   D + T  L   L             L D E  L  + 
Sbjct: 480 A----------------GPYAAEDADITLRLHHALQARLAQTPSLQPVLMDIEMPLVPVL 523

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D  L+      + ++  +L+    +L      +      L   L+   G+
Sbjct: 524 AKIERQGALVDAALLHVQSGELGEKMAELERRAYELAGEEF-NLGSPKQLGAILYDKLGM 582

Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
            ++  +     S  + + + +LA+    L  +     ++ KL     + L   ++   GR
Sbjct: 583 PVLSKTAKGQPST-AEAVLDELAELGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGR 641

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  + Q    + TGR S      QN+P +                              +
Sbjct: 642 IHTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRI 676

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 677 RQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALENV 736

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475
           + +QR   K +   L Y       AK            + ++         + +      
Sbjct: 737 TVDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRTQA 796

Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++K+A          
Sbjct: 797 AEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVNVDNWLSE 856

Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARR 542
                + +LQ+  +L       + E      R+
Sbjct: 857 SGLDARVILQVHDELVLEVREDLVEQVKDEIRQ 889



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+      L        R            +Q  + DI+   M N  
Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVNVD 851

Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
                      ++L VHDE+V E  +     V   +   M+K 
Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSKA 894


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/546 (18%), Positives = 181/546 (33%), Gaps = 96/546 (17%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D +V+ +  N  ++ ++ K+     I    +  T +L+    L        +      
Sbjct: 462 LEDPSVLKIGQNIKYDALVMKR---RGIEIVSFDDTMLLSY--ALDGGRGQHGMDALAER 516

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIP 179
           HL  M         F +    +P    +             EY   D + T  L+  L P
Sbjct: 517 HLGHM------CMTFAQAMGHAPGAKKSDKTFAAMPLDKATEYAAEDADVTMRLWMALKP 570

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                         ER L  +   +   G ++D D++ +L    AQ   +L+E+I  L  
Sbjct: 571 RLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLSHAFAQRTVRLEEEINGLVG 630

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLI--- 278
               +      L   LF    +     ++          L  + ++  I   A+ LI   
Sbjct: 631 HKF-NLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDDLAANEEIDGDARRLINTM 689

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     +       + L   ++   GR+  +    GA+ TGR +      QN+P + +  
Sbjct: 690 LEWRQMTKLKSTYTDALPAYINAETGRIHTSYAL-GATTTGRLASSDPNLQNIPIRTK-- 746

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  IA  G +L+ AD + IE RVLA +A    
Sbjct: 747 ----------------------EGREIRTAFIADKGMQLISADYSQIELRVLAHVADIPQ 784

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             KAFA G DI+  T ++ F  P+  +  E R   K +   + Y     G A        
Sbjct: 785 LKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFGIIYGISAFGLANQLSISRE 844

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++ + Q       + D                     + +  + +  M+      
Sbjct: 845 EASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETIFGRRIHYPEINTKNPSMRGFLERA 904

Query: 493 AVKDKLIGTACELVKKAWR-----------AKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           A+   + G+A +++++A             +  + +LQ+  +L    A         +AR
Sbjct: 905 AINAPIQGSAADIIRRAMIRMPAALVDAKLSSARMLLQVHDELVFEVADNEASALITTAR 964

Query: 542 RVANVP 547
           RV    
Sbjct: 965 RVMETA 970


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/566 (16%), Positives = 184/566 (32%), Gaps = 105/566 (18%)

Query: 5   FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            +D ET S   +           K G  AY         A+     P+++  +     + 
Sbjct: 339 SLDTETTSLDSMTARLVGISLSVKPGFAAY------IPLAHH----PIEVAKQLPLDHVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113
             L  +L +     V  N  ++  +F       I  +     T + +             
Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHIFANY---HIHLQGIAHDTLLESYVLESHRRHDMDS 445

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L+    ++     E        C        +D    +    +         D + T +L
Sbjct: 446 LSERLLDYKPISYE------EICGKGASQIGFDQIELDCATRY------AAEDADITFQL 493

Query: 174 FKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            + + P  +            E  + L+ Q +   G  ID DL+L     +A +  +L++
Sbjct: 494 HENMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDELEK 553

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
               + +    +      L   LF   G+ LV  +     S  S   + +LA D  L ++
Sbjct: 554 KAYSVAEQSF-NLNSPKQLAEILFDKLGLPLVKKTPSGAPST-SEEVLEKLALDYPLPKI 611

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L   ++   GR+         + TGR +      QN+P     
Sbjct: 612 ILDFRGMAKLKSTYTDKLPRMINPETGRVHTNYA-QAVAVTGRLASNDPNLQNIP----- 665

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G  +V AD + IE R++A ++ + 
Sbjct: 666 -------------------VKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLSDDP 706

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             +KAF  G+D++  T ++ F+    +V+ EQR   KV+   L Y       A       
Sbjct: 707 GLLKAFREGQDVHKATASEIFDIAPLEVTPEQRRYAKVINFGLIYGMSAFGVASNLGISR 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPE 491
           +     + ++ +     + + D            E      LW+          +     
Sbjct: 767 TDAKNYIDRYFRRYPGVAEYMDAIRQTAREQGYVETVFGRRLWLPEINSPNGPRRQAAER 826

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV 517
            A+   + GTA +++K +  A +  +
Sbjct: 827 AAINAPMQGTAADIIKLSMIAVNDWI 852



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655
           Q  + DI+   M          +    +++ VHDE+V E PD     V   L  LM +  
Sbjct: 834 QGTAADIIKLSMIAVNDWIENEQLESKLIMQVHDELVLEVPDKELERVRKRLPELMGQVA 893

Query: 656 SWAKGLPLKAE-GY 668
           S    +PL A+ G+
Sbjct: 894 S--LKVPLIADVGF 905


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/582 (18%), Positives = 198/582 (34%), Gaps = 95/582 (16%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQ 59
           D ET S   +    VGV +A AE +A     A+ + D P +L   W   +   +      
Sbjct: 358 DTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWALAQLKPI------ 411

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR-TNGLPSSLKNACLALN 117
            L D     V  N  ++  +  +    DI  +     T + +   N +        LAL 
Sbjct: 412 -LEDAQQAKVGQNLKYDASILARY---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALR 467

Query: 118 FSEHLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           F +H     E   GK      F +  ++   PY    A+                +    
Sbjct: 468 FMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLS 527

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++      D E  L  +   I   G  I+  L+    + IAQ   +L++    +     
Sbjct: 528 VYR------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIAGQEF 581

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
             S     L+   F    + ++  +     S  +   + +LA D  L  +      + KL
Sbjct: 582 NLS-SPKQLQTIFFDQMKLPVIKKTPSGTPST-NEEVLQELALDYPLPAVILEYRGLAKL 639

Query: 293 -----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L + ++   GR+  +      + TGR S      QN+P +             
Sbjct: 640 KSTYTDKLPKMINPTTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------- 685

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A +G K++  D + IE R++A ++G+   ++AF  G+
Sbjct: 686 -----------NEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGK 734

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462
           DI+  T A+     ID+V+ EQR   K +   L Y       AK            +  +
Sbjct: 735 DIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDTY 794

Query: 463 SQNVKST-STFEDWEQAESHHLWM--------------------QDQYPEFAVKDKLIGT 501
            +         ED     +   ++                    +      A+   + GT
Sbjct: 795 FERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAPMQGT 854

Query: 502 ACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGG 536
           A +++KKA         A+  G ++L   + +     V+E  
Sbjct: 855 AADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESA 896


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/589 (17%), Positives = 194/589 (32%), Gaps = 104/589 (17%)

Query: 4   LFIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           L +D ET S  P+    VG+ ++YAE     +        PV   DR+E   +       
Sbjct: 362 LSLDTETTSTDPIRAELVGMSFSYAENQAFYV--------PVP-ADRSEAQKIVDRFRPV 412

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LNFS 119
             +  +M V  N  ++ ++     G+ +    +  T V               LA +  +
Sbjct: 413 FENREIMKVGQNIKYDMLVLANY-GVQLQGPLF-DTMVAHYVLQPELRHNMDYLAEIYLN 470

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                +EE      +      D PP                EY   D + T +L  +L  
Sbjct: 471 YQTIHIEELIGPKGKNQGNMRDLPPASV------------YEYACEDADVTLKLKNKLEK 518

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  L  +   +   G RID + + +         K+++E++ +L  
Sbjct: 519 ELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQLAG 578

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                +     +   LF    I        T + + S   +  L     +         +
Sbjct: 579 TEFNIA-SPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEHRGL 637

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + ++   GR+  +      + TGR S      QN+P +          
Sbjct: 638 KKLLGTYIDALPQLINPETGRIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------- 689

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   I  +G     AD + IE R++A ++G+   I+AF 
Sbjct: 690 -----------------GKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIEAFQ 732

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            G+DI+  T +K +  P+++V++EQR+  K     + Y     G A+            +
Sbjct: 733 KGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAKELI 792

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
             + +N      + D                          S +  ++      A+   +
Sbjct: 793 DGYFENYPHVKEYMDESIRIARERGYIETIFKRKRYLPDINSRNAVVRGYAERNAINAPI 852

Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537
            G+A +++K A           R + + +LQ+  +L        QE   
Sbjct: 853 QGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNFSVLPEEQEKVK 901


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%)

Query: 1   MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49
           M KL        D ET   +      VGV ++A            + +   P +L    +
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107
           +  +  +L   L D     +  N  ++  +  K  G+ I +K +   ++LA    N   +
Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 LAL +         G+ ++       +          NHV        Y   D 
Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL +            E  L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L++   KL       S     L+  L+    + +   + G   S  + + +  LA D
Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L ++     ++ KL T     L   V    R   T      + TGR S      QN+P
Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G ++V AD + +E R++A 
Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444
           I+ +   IKAF    DI+  T A+ F   +++V+ EQR   K +   L Y          
Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750

Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493
             + + +A             + ++ Q ++  +  + + E      +++ D +       
Sbjct: 751 LGIGRDLAKEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810

Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536
                  +   + GTA +++K A      W  K+      ++Q+  +L    A    E  
Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870

Query: 537 SISARRVAN 545
               ++   
Sbjct: 871 IPQIKKAME 879


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/516 (18%), Positives = 168/516 (32%), Gaps = 93/516 (18%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D++   +  N  ++  +F           +   T + +       +     LA     
Sbjct: 423 LEDDSKPKLGQNIKYDIHVFANHGVTLCGVAQ--DTMLESYVLASHRNHGMDSLAERLLN 480

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
             T   E        C        +D              EY   D + T  L +++ P 
Sbjct: 481 LKTITYE------EVCGKGASQIGFDQID------LARATEYAAEDADVTLRLHRKMFPQ 528

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  + ++ Q I   G  ID + +      + Q    L++       
Sbjct: 529 VSAAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQRMLSLEQAAYDAAG 588

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +   LF    + +V  +     S      + +LA+D  L +L      +
Sbjct: 589 QPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 646

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  +     A  TGR +      QN+P +          
Sbjct: 647 AKLKSTYTDKLPKMVNPNTGRVHTSYGQATAV-TGRLASTEPNLQNIPVRT--------- 696

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IAS G  +V AD + IE R++A I+G++  ++AFA
Sbjct: 697 ---------------EEGRRIREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRAFA 741

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGEDI+  T ++ F    + VS EQR   KV+   L Y       A             +
Sbjct: 742 NGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHYI 801

Query: 460 QQFSQNVKSTS-TFEDWEQAESHHLWM--------------------QDQYPEFAVKDKL 498
            ++       +   ED  Q      ++                    +      A+   +
Sbjct: 802 DRYFMRYPGVAQYMEDTRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPM 861

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524
            GTA +L+K +  A          + + ++Q+  +L
Sbjct: 862 QGTAADLIKLSMIAVQGWLERDKLQTRQIMQVHDEL 897


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 155/687 (22%), Positives = 233/687 (33%), Gaps = 134/687 (19%)

Query: 7   DIETRSPQ--PLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRD 63
           D ET   +   +  +GV AY            +D      W         PS+      +
Sbjct: 26  DTETYYSKGYDIRSLGVDAYVADPR-------FDCYLASFWGPHGNFVGHPSECPWEEFN 78

Query: 64  ETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + V  ++HN+ F+R +F +      +   I  + W  ++ LA     P +L  A   L  
Sbjct: 79  DCV-WISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL-L 136

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF-KRL 177
            E   K       I    KG                       Y   D     EL+    
Sbjct: 137 GEKPNK------AIRDAMKGIQGGLLCHDKAVLD---------YALDDARLACELWISHC 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 ER L  L     + G  +D   + +  E + Q R   D++   L          
Sbjct: 182 DKWPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVR---DDEATNLPWFPRLKPSS 238

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA----ILKLN 293
             A          I + + +            I +  +     +  S        +  L 
Sbjct: 239 PKAFAE-ACQQARIPIPNSTSEDDPQTQEW--IERYGERYPWLKHMSEWRKANRMLKVLE 295

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC-VFQPQNLPRQERSEEILTQTIQALNRGET 352
           T+      DG L   L+++GA  TGRW+G      QN  R                    
Sbjct: 296 TMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNR-------------------- 335

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                       R C++A  G KL++ADL+ IE RVLAWIAG+        NG  IY   
Sbjct: 336 ----EAYYGVDPRKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAH 391

Query: 413 YAKAFNTPIDKVSKEQRAI---GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              + N     + KE   +    K   + LGY  G K F+++A   GL            
Sbjct: 392 AETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGL------------ 439

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                      ++     +     +R  +  ++ LW+ + +   
Sbjct: 440 ---------------------------EMSIGEAKRTVDDFRKANPRIVSLWQAVEDS-- 470

Query: 530 CVVQEGGSISARRVANVPRLVMRRH-KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                MR H      + LPS R + Y DV+ +     T      
Sbjct: 471 ---------------------MRYHIGSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGR 509

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           R   YGGKLTEN+VQA +RD+  EG+    K G  I+ TVHDE++ E P+    +V T+ 
Sbjct: 510 RLHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVT 569

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            L+ + P W  GLP+ AEG E   Y K
Sbjct: 570 DLLAQTPDWIPGLPVAAEGIETSCYTK 596


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/563 (16%), Positives = 183/563 (32%), Gaps = 103/563 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82
            +++ ++                  +  D     L  YL DET   V  N  ++  +  +
Sbjct: 376 LSFSVEEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPYLEDETKAKVGQNLKYDASVLAR 435

Query: 83  TLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
               DI  K     T + +   N +        LAL + +H T   E            I
Sbjct: 436 Y---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFE-----------EI 481

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189
                     N +   +    Y   D + T  L   L              +D E  L  
Sbjct: 482 AGKGKKQLTFNQIAL-EEAAPYAAEDADITLRLHNVLHAKLVTDEKLNAVFTDIELPLIS 540

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +  +G  ID  L+      I Q   +L+    ++      +      L+  LF   
Sbjct: 541 VLSRMERKGVYIDDMLLSAQSLEIGQRLDELETASFEVAGQEF-NMNSPKQLQTILFEKM 599

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303
            + ++  +     S  +   + +LA +  L +L      + KL     + L + ++   G
Sbjct: 600 ELPVIKKTPSGAAST-NEEVLQELALEYELPKLILEYRGLAKLKSTYTDKLPKMINPSTG 658

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P + +                            
Sbjct: 659 RVHTSY-HQAVTATGRLSSTDPNLQNIPIRNK------------------------EGRR 693

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +A +G K++  D + IE R++A ++ +   ++AF+ G+DI+  T A+     I++
Sbjct: 694 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSIEE 753

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           V+ E R   K +   L Y       AK            +  + +       + +     
Sbjct: 754 VTSEDRRRAKAINFGLIYGMSAFGLAKQIGISRGEAQDYMNVYFERYPGVMQYMEETRLL 813

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------R 511
                             +  + +   +      A+   + GTA +++KKA         
Sbjct: 814 ATEQGYVETLYGRRLYLPEINARNAIRRKAAERAAINAPMQGTAADIIKKAMILVDNWIE 873

Query: 512 AKHQGVLQLWKDLTEGFACVVQE 534
           A+  G + L   + +     V+E
Sbjct: 874 AEGTGRVNLLMQVHDELVFEVKE 896



 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 603 QAISRDILCEGMKN----ATKNG---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M          G    ++++ VHDE+V E  +    ++   + +LM   
Sbjct: 854 QGTAADIIKKAMILVDNWIEAEGTGRVNLLMQVHDELVFEVKEDELEAITKQVTALMEAA 913

Query: 655 PSWAKGLPLKAE-GY 668
            S    +PL AE G+
Sbjct: 914 VS--LDVPLIAESGF 926


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 198/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + Q     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLVQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 198/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                    L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTGRHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 498 GTDSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 937 NEVEKTIPVVRRVME 951


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/595 (17%), Positives = 193/595 (32%), Gaps = 107/595 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59
            +D ET    P+    VG+    E          + +   P +L  D   +   P     
Sbjct: 331 SLDTETTGLDPMRAELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVLEKLKP----- 385

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118
           +L D +   +  N  F+R +F    GI +       T + +             LAL   
Sbjct: 386 WLTDPSAPKLGQNLKFDRHVFANH-GIGLKGI-VHDTLLQSYVFESHRPHDMDNLALRHL 443

Query: 119 SEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                  +E  GK      F +  I                +   +Y   D + T +L +
Sbjct: 444 GIKTITYDEVTGKGAARIGFEQVDI----------------ERAAQYAAEDADVTLQLHQ 487

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L                 E  +  +   +   G  +D+ L+      + ++   L+E  
Sbjct: 488 HLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLALEERA 547

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             +      +      ++  LF    + ++  +   + S      + +LA D  L R   
Sbjct: 548 CTIAGLPF-NLNSPKQIQEILFDRLKLPVMKKTPSGVPST-DEDVLQKLALDYPLARALL 605

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   V    GR+         + TGR +      QN+P +     
Sbjct: 606 DYRGLAKLKSTYTDKLPRMVHPVTGRVHTNYA-QAVAVTGRLASNEPNLQNIPIRT---- 660

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA +G +++ AD + IE R++A I+ +   
Sbjct: 661 --------------------AEGRRIREAFIAPSGYRIISADYSQIELRIMAHISQDAGL 700

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +KAFA GEDI+  T ++ F  P++ V+ EQR   K++   L Y       A       + 
Sbjct: 701 LKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMSEFGLATQLGIERAA 760

Query: 455 CGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFA 493
               + ++       + +              E      LW+          +      A
Sbjct: 761 ARTYMDRYFSRYPGVADYMQRTRKTARENRYVETVFGRRLWLSEINSSNGMRRQAAERAA 820

Query: 494 VKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           +   + GTA +++K A      W  +H+   +L   + +     V E    + +R
Sbjct: 821 INAPMQGTAADIIKLAMIEVHDWLRRHELRSKLVMQVHDELVLEVPENEIETIKR 875


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%)

Query: 1   MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49
           M KL        D ET   +      VGV ++A            + +   P +L    +
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107
           +  +  +L   L D     +  N  ++  +  K  G+ I +K +   ++LA    N   +
Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 LAL +         G+ ++       +          NHV        Y   D 
Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL +            E  L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSLELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L++   KL       S     L+  L+    + +   + G   S  + + +  LA D
Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L ++     ++ KL T     L   V    R   T      + TGR S      QN+P
Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G ++V AD + +E R++A 
Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444
           I+ +   IKAF    DI+  T A+ F   +++V+ EQR   K +   L Y          
Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750

Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493
             + + +A             + ++ Q ++  +  + + E      +++ D +       
Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810

Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536
                  +   + GTA +++K A      W  K+      ++Q+  +L    A    E  
Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870

Query: 537 SISARRVAN 545
               ++   
Sbjct: 871 IPQIKKAME 879


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/517 (18%), Positives = 172/517 (33%), Gaps = 94/517 (18%)

Query: 46  DRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           D   +  +P+ L            L D  V+ V  N  ++ ++  +  GI++       T
Sbjct: 478 DLFGEGLLPNQLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH-GIEVRPYD--DT 534

Query: 97  SVLARTNG-LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            +++        S     LA     H            R  K + D  P D   A     
Sbjct: 535 MLISYVLDAGKGSHGMDELARRHLGHQPITFADVTGTGR-TKVTFDRVPLDKATA----- 588

Query: 156 WQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDL 205
                 Y   D + T  L++ + P              ER L  +   +   G R+D  +
Sbjct: 589 ------YAAEDADVTLRLWRLMKPRLAAERRATVYETLERPLVPVLARMESCGIRVDRGM 642

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           + +L    +Q   +L+ +I ++      S      +   LF   G+     +    +   
Sbjct: 643 LSRLSGDFSQSLARLEAEIQEMAGESF-SVSSPKQIGDILFGKFGLPGAKKTPSG-QWAT 700

Query: 266 SHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTG 318
             + + +LA     L +       + KL     +TL E       R+  +     A+ TG
Sbjct: 701 PATLLEELAGQGHALPKKILEWRQLSKLKSTYTDTLQEHADRETNRVHTSFAL-AATTTG 759

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P +                              +R   +A  G KL+ 
Sbjct: 760 RLSSSDPNLQNIPIRT------------------------EEGRRIRQAFVADEGHKLIS 795

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA IA      +AFA G DI+  T +  F  P+D+++ + R   K +   
Sbjct: 796 ADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINFG 855

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474
           + Y     G A             ++Q+ +       + D                    
Sbjct: 856 IIYGISAFGLADRLGIPQGEAAAFIKQYFERFPGIRAYIDDIKKTCRDKGYVTTLFGRVC 915

Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            + Q  S++   +      A+   + G+A +++++A 
Sbjct: 916 HYPQIRSNNPQERASVERQAINAPIQGSAADIIRRAM 952


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/549 (19%), Positives = 194/549 (35%), Gaps = 87/549 (15%)

Query: 46  DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           D  E   M  D     L   L D+++M VA ++     L  +  GI +           A
Sbjct: 396 DLAEG-QMDFDAALALLRPMLEDDSIMKVAQDAKAAMKLLGRH-GIALAPVDDTHLLSYA 453

Query: 101 RTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANH-VQ 154
             +GL       L +  L     E  + +  GK+    F +  +++  PY    A+  ++
Sbjct: 454 LNSGLHGHTLDTLSDRLLGHRPIELKSVVGTGKSA-RTFDRVPVEAVTPYAAEEADIVLR 512

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            WQ   +   R  + TR +++ L      ER L  +   +   G R+D D + ++    +
Sbjct: 513 LWQALKQQLFRK-QVTR-VYETL------ERPLIPVLAGMERAGIRVDRDTLSRMSNAFS 564

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           Q+   L+ ++ +L      +      L   LF   G+      + T         +  LA
Sbjct: 565 QKMAGLEAEVYELAGREF-NLGSPKQLGEILFDELGLPGGKKGK-TGAYGTGADVLEDLA 622

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  L         I KL     ++L   +  +  R+  +    GA+ TGR +      Q
Sbjct: 623 TEHDLPGRILDWRQISKLKSTYTDSLQGYIQPETSRVHTSYSQAGAA-TGRLASTEPNLQ 681

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +R   +A  GK LV  D + IE R+
Sbjct: 682 NIPVRT------------------------EEGRRIREAFVADLGKVLVSLDYSQIELRI 717

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           LA +AG D   +AF +G+DI+  T ++ FN P+++++ + R   K +   + Y     G 
Sbjct: 718 LAHVAGLDALREAFRSGQDIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGL 777

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------- 488
           A+  +         + ++ +       + D   A +                        
Sbjct: 778 ARSLRIPREEAQGFINRYFERFPGIRDYMDETVAFAKEHGFVQTLFGRKIHTPEINAKGP 837

Query: 489 ----YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGG 536
                   A+   + GTA +++++A       +        LQ+  +L         E  
Sbjct: 838 GAGFARRAAINAPIQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELLFEVEEGAVEAL 897

Query: 537 SISARRVAN 545
             +AR V  
Sbjct: 898 VAAAREVME 906


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/596 (18%), Positives = 191/596 (32%), Gaps = 103/596 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
           D ET S  P+    VG+    E         A+       +L +  EQ  +   L +   
Sbjct: 363 DTETTSLDPMAARLVGMSFAVEPGEAAYLPLAHR---GAAQLPEAPEQLPLDEVLDRLRP 419

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
               +    +  N  ++  +     GI +       T + +       +     LA    
Sbjct: 420 WFESDRHAKLGQNLKYDAHVLANH-GIALRGIA-HDTLLESYVLESDKAHDMDSLAKR-- 475

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            HL         +   C        +D              EY   D + T  L + L P
Sbjct: 476 -HLGLATIPYTEV---CGKGAKQIGFDEVDV------ARATEYAAEDADVTLRLHQHLCP 525

Query: 180 LS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        + E  +  + Q +   G  ID  L+ +  E + +    L+ +   L 
Sbjct: 526 QLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRRLYTLEGEAHALA 585

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L   LF   G+ +V  +  T +       + +LA+D  L +L      
Sbjct: 586 GQPF-NLGSPKQLGEILFGKLGLPVVKKT-ATGQPSTDEEVLEKLAEDYPLPKLLLEHRG 643

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   V+   GR+  +     A  TGR S      QN+P +         
Sbjct: 644 LSKLKSTYADKLPRMVNPRTGRVHTSFSQATAV-TGRLSSSEPNLQNIPIRT-------- 694

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA     +V AD + IE R++A ++ +   ++AF
Sbjct: 695 ----------------PEGRRIRAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAF 738

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           A GED++  T  + F     +V+ EQR   KV+   L Y       AK      +     
Sbjct: 739 ARGEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAW 798

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           + ++       + + D  +AE+      +                          A+   
Sbjct: 799 IDRYFARYPGVAEYMDRTRAEAREQGYVETVFGRRLYLPDIRASQAGRRAGAERAAINAP 858

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           + GTA +L+KKA  A          K + VLQ+  +L         E       R+
Sbjct: 859 MQGTAADLIKKAMIATDAWLASCGLKSKLVLQVHDELVLEVPGAELETVREELPRL 914


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/581 (18%), Positives = 194/581 (33%), Gaps = 111/581 (19%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             D ET S  P+    VGV ++A +         A+   D PV+L     +  + + L  
Sbjct: 353 SFDTETTSLDPMRARIVGV-SFATEPGRAAYVPLAHRGPDHPVQLP----RDEVLARLKP 407

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---L 116
           +L       V  +  ++  +     GI +       T + +             LA   L
Sbjct: 408 WLESPAHKKVGQHLKYDAQVLASH-GITLAGIE-HDTLLESYVLESHRPHDMDNLATRHL 465

Query: 117 NFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                  +   GK      F + S+D                   EY   D + T  L +
Sbjct: 466 GVKTIKYEDVAGKGAAQIGFDEVSVDVA----------------TEYSAEDADITLRLHQ 509

Query: 176 RLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P    E+               + Q I   G  ID D ++     +     +L  + 
Sbjct: 510 VLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLELQAEA 569

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L  G   +      +    F    + +V  +     S      + +LA+D  L ++  
Sbjct: 570 YALAGGEF-NLNSPKQIGEIFFQQLQLPVVKKTPSGAPST-DEDVLQKLAEDYPLPKVLL 627

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              A+ KL     + L + ++ D GR+         + TGR +      QN+P +     
Sbjct: 628 DYRALTKLKSTYTDKLPKMINPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---- 682

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G  +V AD + IE R++A I+G+   
Sbjct: 683 --------------------PEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISGDASL 722

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF +GED++  T ++ F     +V+ EQR I KV+   L Y       A         
Sbjct: 723 MAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVINFGLIYGMSAFGLASNLGIARDA 782

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493
             L + ++       + + D  + E+             LW+          +      A
Sbjct: 783 AKLYIDRYFARYPGVARYMDETRMEAKSCGFVQTVFGRRLWLPEINGGNGPRRQAAERAA 842

Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
           +   + GTA +L+K +           R K + ++Q+  +L
Sbjct: 843 INAPMQGTAADLIKLSMITVQDWIERARVKSRLIMQVHDEL 883


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/581 (17%), Positives = 190/581 (32%), Gaps = 109/581 (18%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S       L  V V   A +A      + +   P +L    ++  +   L   
Sbjct: 345 ALDTETTSLNYMQAELVGVSVAVEAGKAAYIPFGHNYPGAPDQL----DKQFVLDALKPI 400

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFS 119
           L D+ +  V  N  ++  +  + +GI +    +  T + +     + +      LAL + 
Sbjct: 401 LEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAY-DTMLESYVLDSVATRHDMDSLALKYL 459

Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
              T   E   GK      F +  +                     Y   D + T  L +
Sbjct: 460 GRKTISFEEIAGKGAKQLTFNQVGL----------------HEASRYAAEDADVTLRLHQ 503

Query: 176 RLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P             D E  L  +   I   G  +D  L+    + +A+   +L E  
Sbjct: 504 TLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEKA 563

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++       S     L   L+    I ++  +     S  + + + +LA +  L ++  
Sbjct: 564 CEIAGQEFNLS-SPKQLGEILYQKLEIPVIKKTPKGAPST-AEAVLQELALEYPLPQVIM 621

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L E ++   GR+  +      + TGR S      QN+P +     
Sbjct: 622 DYRGVAKLKNTYTDKLPELINQRTGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRS---- 676

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  G+K+V  D + IE R++A ++ +   
Sbjct: 677 --------------------EEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHLSDDKGL 716

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
             AF  G DI+  T A+ +   +D+VS   R   K +   L Y       AK        
Sbjct: 717 TDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKE 776

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493
               +  + +       +    +A +                      +   +      A
Sbjct: 777 AQEYIDLYFERYPGVKKYMADTRALAADNGYVETVYGRRLYLPEIHSKNGQRRQAAERAA 836

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +   + GTA +++KKA    H          + ++Q+  +L
Sbjct: 837 INAPMQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDEL 877



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
           Q  + DI+ + M         T     +++ VHDE+V E  +      V  + + M
Sbjct: 842 QGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDELVFEVAEDQVDDLVREVKARM 897


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/565 (18%), Positives = 195/565 (34%), Gaps = 100/565 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D ET S       L  +     A +A     A+ +   P +L    ++      L  
Sbjct: 345 IAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRP 400

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D+ V  V  N  ++  +     GI +    +  T + +   N + S      LA+ +
Sbjct: 401 ILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSVASRHDMDGLAIKY 458

Query: 119 SEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     +   GK      F +  +                ++   Y   D + T  L 
Sbjct: 459 LGHKNIGFEDIAGKGAKQLTFNQIPL----------------EVAAPYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            ++ E  L  +   I  +G  ID  L+ +  + +A++   L+E 
Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++      +      L++  F   G  +   +     S      + +LA D  L ++ 
Sbjct: 563 AYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 620

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+  +     A+ TGR S      QN+P +    
Sbjct: 621 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 677 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y       A+      +
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +A +                      +   +      
Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 835

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517
           A+   + GTA +++KKA     Q +
Sbjct: 836 AINAPMQGTAADIIKKAMINIAQWI 860



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617
            RRL   +++   +          R            +Q  + DI+ + M N        
Sbjct: 813 GRRLYLPEIRDRNAMRRQGA---ERAAINAP------MQGTAADIIKKAMINIAQWIKTE 863

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           T+    +++ VHDE+V E       ++   +C LM K 
Sbjct: 864 TQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/598 (17%), Positives = 188/598 (31%), Gaps = 114/598 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDLLQY--- 60
            +D ET S   L           A I   +++ +                P  L      
Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398

Query: 61  ------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                 L D     +  +  ++R +F    GI +       T + +    +      A L
Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLASL 456

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G+  I+    C       P+     +   A+         D + T +
Sbjct: 457 AER--------HTGRTGISYEDLCGKGAKQIPFAQVPVDKAAAYS------CEDSDQTLD 502

Query: 173 LFKRLIPLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           + + L P     D  R ++ L+         I   G  ID   +      + Q   +L++
Sbjct: 503 VHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQ 562

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +   +      +      L    F   G+ +V  +  T         + +LA+D  L   
Sbjct: 563 EAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 620

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL     + LS       GR+         + TGR S      QN+P +   
Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT-- 677

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +  AD + IE R++A I+G++
Sbjct: 678 ----------------------PEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AF  G D++  T A+ F   +D+VS EQR   KV+   L Y       AK      
Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIET 775

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 + ++ Q       + +  +A +                      +   +     
Sbjct: 776 KAAAAYIDRYFQRYPGVKQYMEETKARAKARGYVETVFGRRLYLPEINSPNGPRRGAAER 835

Query: 492 FAVKDKLIGTACELVKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            A+   + GTA +L+KKA         A+   VL +   + +     + EG     RR
Sbjct: 836 AAINAPMQGTAADLIKKAMVAVQGELDARKPEVLMI-MQVHDELVFELPEGEVDWLRR 892


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  QA      + +   PV+L DRT+     + L   L 
Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQ---ALAQLAPLLT 416

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++                    +G      ++          
Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+          +         D + T  L + L P   
Sbjct: 477 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLT 523

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + +    +++      +   +L    
Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 583

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S    + +  +A    L R+      + K
Sbjct: 584 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 641

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E +    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 642 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 691

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AF +G
Sbjct: 692 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 736

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 737 ADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 796

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 797 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 856

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 857 TAADIIKRAMVNVDGWIADHAQRAKMILQVHDEL 890



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 742 ATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 801

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 802 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 861

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M N             ++L VHDE+V E       + +  + + M 
Sbjct: 862 IKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 911


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/602 (18%), Positives = 208/602 (34%), Gaps = 111/602 (18%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + ID ET S       L  +     A +A      + + D P +L    +Q+   + L  
Sbjct: 340 IAIDTETTSLNYMDAKLVGISFAIEAGKAAYLPLGHDYLDAPEQL----DQAEALAKLKP 395

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L +  +  V  N  ++  +F   +GI +    +  T + +   N + +      LAL +
Sbjct: 396 LLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMDDLALKY 453

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK +    F +  +++                   Y   D + T  L 
Sbjct: 454 LGHKNISFEEIAGKGVKQLTFNQIDLETAA----------------PYAAEDADITLRLH 497

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P            +D E  L  +   I   G  ID  ++ +    +A+   +L++ 
Sbjct: 498 QHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTIDELEQK 557

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++       S     L++  F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 558 AFEIAGEKFNLS-SPKQLQVLFFEKLGYPIIKKTPKGAPSTAEE-VLVELALDYPLPKII 615

Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V++  GR+  +     A+ TGR S      QN+P +    
Sbjct: 616 LQHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 671

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  GKK++ AD + IE R++A ++ ++ 
Sbjct: 672 ---------------------EEGRRIRHAFIAREGKKVLAADYSQIELRIMAHLSQDEG 710

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA G+DI+  T A+ F+    +V+ EQR   K +   L Y       AK       
Sbjct: 711 LLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRP 770

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  + +       + +  +AE+                      +   +      
Sbjct: 771 EAQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERA 830

Query: 493 AVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           A+   + GTA +++KKA              +   ++Q+  +L         E       
Sbjct: 831 AINAPMQGTAADIIKKAMINIAHWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVC 890

Query: 542 RV 543
           ++
Sbjct: 891 QL 892



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M N        T    D+++ VHDE+V E        +   +C LM   
Sbjct: 837 QGTAADIIKKAMINIAHWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVCQLMADA 896


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/541 (17%), Positives = 172/541 (31%), Gaps = 93/541 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D  V+ V  N  F+  +F +  GI +               GL     +     
Sbjct: 465 LKPLLEDPAVLKVGQNVKFDWQIFARH-GIAMAPIDDTMLISYVLGTGLHGHGMDELALR 523

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +      K +E         + + D  P D  R           +Y   D + T  L + 
Sbjct: 524 HLGHTTIKYDEVTGTGK--SRITFDRVPLDKAR-----------DYAAEDADITLRLHRV 570

Query: 177 L----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L                ER L  +   +  RG  +D  ++ ++    AQ   +++ +I K
Sbjct: 571 LKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRAVLRQMSSDFAQRMLEMEAEIQK 630

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280
           L      +      L   LF    +      +           +  LA+        +L+
Sbjct: 631 LAPRAF-NVGSPKQLGEILFDEMKLPGGSKGKSG-AWGTDSGVLEGLAEQGVEIAQKVLD 688

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +       + L+E + +  GR+  +     A+ TGR S      QN+P +      
Sbjct: 689 WRQLAKLKSTYTDALAEQIDARTGRVHTSFAL-AATATGRLSSTDPNLQNIPIRT----- 742

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  G  L+  D + IE R++A +AG     
Sbjct: 743 -------------------EEGRKIRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALR 783

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +G DI+  T ++ F  P+D+++ E R   K +   + Y     G  +         
Sbjct: 784 RAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAINFGIIYGISGFGLGRQLGITPGEA 843

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494
           G  ++Q+ +      T+ +  +A +                          +      A+
Sbjct: 844 GAFIRQYFERFPELQTYMETTKAFAREHGYVTTLLGRRCWIQGIREKAPARRAYAERQAI 903

Query: 495 KDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARRVA 544
              + GTA +++K+A                 +LQ+  +L         E  +   R V 
Sbjct: 904 NAPIQGTAADIIKRAMARIEPALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVM 963

Query: 545 N 545
            
Sbjct: 964 E 964



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643
           R Y  +   N  +Q  + DI+   M          K    ++L VHDE++ E P+     
Sbjct: 895 RAYAERQAINAPIQGTAADIIKRAMARIEPALAAAKLDAAMLLQVHDELLFEVPEAQ--- 951

Query: 644 VGTLCSLMTKNPSWAKGL--PLKAE-GY 668
           V    +++      A GL  PL AE G+
Sbjct: 952 VEETAAVVRGVMEGAAGLGVPLVAEAGW 979


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 172/517 (33%), Gaps = 94/517 (18%)

Query: 46  DRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           D   +  +P  L            L D  V+ V  N  ++ ++  +  GI+I       T
Sbjct: 470 DLFGEGLLPDQLPWDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQPYD--DT 526

Query: 97  SVLARTNG-LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            +++        S     LA     H            R  K + D  P D   A     
Sbjct: 527 MLISYVLDAGKGSHGMDELARRHLGHQPITFADVTGTGR-AKVTFDRVPLDKATA----- 580

Query: 156 WQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDL 205
                 Y   D + T  L++ + P              ER L  +   +   G R+D D+
Sbjct: 581 ------YAAEDADVTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDM 634

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           + +L    +Q   +L+ +I ++      S      +   LF   G+     +    +   
Sbjct: 635 LSRLSGDFSQSLARLEAEIQEMAGETF-SVSSPKQIGDILFGKLGLPGAKKTPSG-QWAT 692

Query: 266 SHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTG 318
             + + +LA     L R       + KL     ++L E       R+  +     A+ TG
Sbjct: 693 PATLLEELATQGHPLPRKILEWRQLSKLKSTYTDSLQEHAERESDRVHTSFAL-AATTTG 751

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P +                              +R   +A  G +L+ 
Sbjct: 752 RLSSSDPNLQNIPIRT------------------------EEGRRIRQAFVADAGHQLIS 787

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA +A      +AFA+G DI+  T +  F  P+ +++ + R   K +   
Sbjct: 788 ADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINFG 847

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474
           + Y     G A             ++Q+ +       + +                    
Sbjct: 848 IIYGISAFGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACRDKGYVTTLFGRVC 907

Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            + Q  S++   +      A+   + GTA +++++A 
Sbjct: 908 HYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAM 944


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 209/605 (34%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLP----RDEVLAKLTPWLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D +   +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 410 DASRKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 467

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +D                   EY   D + T +L + L 
Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPLDKA----------------SEYAAEDADITLQLHRALY 511

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA    +L+++   L
Sbjct: 512 PQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYAL 571

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+   GR+         + TGR +      QN+P +        
Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 725 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +A +             LW+          +      A+  
Sbjct: 785 YIDRYFLRYPGVAHYMEETRARAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ +G   VV+E        
Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPDGELSVVREKLPEMMCG 904

Query: 543 VANVP 547
           VA + 
Sbjct: 905 VAKLK 909



 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 16/136 (11%)

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +T   A +  +   +    VA+       R K   ++     RRL   ++ G       A
Sbjct: 777 ITRDAAKLYIDRYFLRYPGVAHYMEETRARAKERGYVETVFGRRLWLPEINGGNGPRRQA 836

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG---YDIVLTVHDEIVSETP 637
                R            +Q  + D++   M         G     +++ VHDE+V E P
Sbjct: 837 A---ERAAINAP------MQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVP 887

Query: 638 DTPYFSV-GTLCSLMT 652
           D     V   L  +M 
Sbjct: 888 DGELSVVREKLPEMMC 903


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 98/585 (16%), Positives = 191/585 (32%), Gaps = 121/585 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQSAMPSD 56
           D ET S            A++A +   ++A +                    E  A+ S 
Sbjct: 357 DTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLSA 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L   L D     +  +  ++  +     GI++    +  T + +      +       LA
Sbjct: 407 LKPLLEDPAKTKICQHGKYDMNVL-MHYGIEMRGMAF-DTMLESYVLDATATRHDMDSLA 464

Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L +    T   +   GK      F + +I                +  G Y   D + T 
Sbjct: 465 LKYLGRGTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDADVTL 508

Query: 172 ELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L+            L++ E  L  +   I   G  +D  L+ +    +  +  +L
Sbjct: 509 RLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQL 568

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           + +   +      +      L   L+   G  ++  + G   S           +D  L 
Sbjct: 569 EREAFDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLP 627

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           ++     ++ KL     + L + ++   GR+  +      + TGR S      QN+P + 
Sbjct: 628 KVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT 686

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A+ G KL+ AD + IE R++A +A 
Sbjct: 687 ------------------------AEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQ 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   + AF N  D++  T A+ F  P+++VS +QR   K +   L Y       AK    
Sbjct: 723 DAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDV 782

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489
                   + ++         + +                       +  S +  M+   
Sbjct: 783 GRKEAQEYIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGA 842

Query: 490 PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
              A+   + GTA +++K+A  A            + +LQ+  +L
Sbjct: 843 ERTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDEL 887


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/579 (18%), Positives = 200/579 (34%), Gaps = 89/579 (15%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VGV +A AE +A     A+ + D P +L    ++  + + L   L 
Sbjct: 358 DTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQL----DRDWVLAQLKPILE 413

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSE 120
           D     V  N  ++  +  +    DI  +     T + +   N +        LAL F +
Sbjct: 414 DAQQAKVGQNLKYDASILARY---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQ 470

Query: 121 HLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           H     E   GK      F +  ++   PY    A+                +    +++
Sbjct: 471 HSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYR 530

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 D E  L  +   I   G  I+  L+    + IAQ   +L++    +       S
Sbjct: 531 ------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIAGQEFNLS 584

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                L+   F    + ++  +     S  +   + +LA D  L  +      + KL   
Sbjct: 585 -SPKQLQTIFFDQMKLPVIKKTPSGTPST-NEEVLQELALDYPLPAVILEYRGLAKLKST 642

Query: 293 --NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L + ++   GR+  +      + TGR S      QN+P +                
Sbjct: 643 YTDKLPKMINPTTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR---------------- 685

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A +G K++  D + IE R++A ++G+   ++AF  G+DI+
Sbjct: 686 --------NEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIH 737

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQN 465
             T A+     ID+V+ EQR   K +   L Y       AK            +  + + 
Sbjct: 738 AATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDTYFER 797

Query: 466 VKST-STFEDWEQAESHHLWM--------------------QDQYPEFAVKDKLIGTACE 504
                   ED     +   ++                    +      A+   + GTA +
Sbjct: 798 YPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAPMQGTAAD 857

Query: 505 LVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGG 536
           ++KKA         A+  G ++L   + +     V+E  
Sbjct: 858 IIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESA 896


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 110/590 (18%), Positives = 203/590 (34%), Gaps = 100/590 (16%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S   +    VG+    E   A      +A  D P +         +   L  +
Sbjct: 374 ALDTETTSLDEMRAEIVGISLSVEPGAAAYIPLRHAGPDAPEQ---LPADEVL-QRLKPW 429

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D     +  +  ++R +F    GI++       T + +    +      A LAL    
Sbjct: 430 LEDAARPKLGQHVKYDRHVFANA-GIEVHGY-VHDTMLQSYVLEVHRPHGLASLALR--- 484

Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                   +  I+    C       P+     +   A+         D + T ++ + L 
Sbjct: 485 -----HTNRTGISYEDLCGKGAHQIPFAQVPVDKAAAY------ACEDADQTLDVHRVLW 533

Query: 179 P---LSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P    +DG R ++ L+         I   G  ID   + +    + Q   +L+++   + 
Sbjct: 534 PQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQLEQEAYDIA 593

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 +     L    F   G+ +V  +  T         + +LA+D  L        +
Sbjct: 594 GQPFNLA-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLLEHRS 651

Query: 289 ILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L++ A+   GR+         + TGR S      QN+P +         
Sbjct: 652 LSKLKGTYTDKLAQLALPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-------- 702

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR   IA+ G  +  AD + IE R++A ++G++  ++AF
Sbjct: 703 ----------------PEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSGDESLLRAF 746

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
             G D++  T ++ FN  +++VS EQR   KV+   L Y       AK            
Sbjct: 747 HEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAY 806

Query: 459 LQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY--------------------PEFAVKDK 497
           + ++ Q       + D     +  H +++  +                       A+   
Sbjct: 807 IDRYFQRYPGVKRYMDETVEFARDHGYVETVFGRRLYLVDINGGSGPRKKAAERQAINAP 866

Query: 498 LIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           + GTA +L+KKA  A        Q  +++   + +     + EG S   R
Sbjct: 867 MQGTAADLIKKAMVAVQAELDARQSEVRVIMQVHDELVFELPEGESDWVR 916


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 103/550 (18%), Positives = 184/550 (33%), Gaps = 78/550 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  +  V  N  ++  +F +  GID+    +  T + +             LA 
Sbjct: 411 LKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNMDDLAK 468

Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   E   GK      F +  ++           V        + K   E T E
Sbjct: 469 RYLGHQTITFEEIAGKGKNQLTFNQIPLEKAAEYAAEDADVTMKLQQVLWEKLSKEPTLE 528

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
              +L    + E  L  +   +  RG  ID D +      IA    +L+E    L     
Sbjct: 529 ---KLFK--EMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLAGQPF 583

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
             +  T  L+  LF   G+ ++  +     S  +   + +LA    L ++      + KL
Sbjct: 584 NLA-STKQLQEILFDKLGLPVIQKTPKGAPST-NEEVLEELAFSHELPKVLVEHRGLSKL 641

Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L + V+   GR+  +      + TGR S      QN+P +             
Sbjct: 642 KSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------------- 687

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   IA  G  +V AD + IE R++A ++ +   I AF  G+
Sbjct: 688 -----------NEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGK 736

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
           DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +      +     +  +
Sbjct: 737 DIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGIGRADAQSYMDLY 796

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +      TF                            S +   +      A+   + GT
Sbjct: 797 FKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAINAPMQGT 856

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A +++K+A     Q +           A ++Q    +    V  V    +  + + +   
Sbjct: 857 AADIIKRAMIQLDQKL-----QNDPDIAMIMQ----VHDELVFEVRSEKVEFYSKLIKTH 907

Query: 562 LPSSRRLVYS 571
           + S+  LV  
Sbjct: 908 MESAADLVVP 917


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/576 (18%), Positives = 195/576 (33%), Gaps = 104/576 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  +A      + +   PV+L DRT+     + L+  L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTQ---ALAQLVPLLT 415

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++  G+++        +  A    L S + N+  A +  + L
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH-GVEL--------AGYAHDTLLESFVLNSGSARHDMDSL 466

Query: 123 TKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
            K   G   +     C       P+          +         D + T  L   L P 
Sbjct: 467 AKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRY------AAEDADITLRLHHVLGPK 520

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  L  +   I   G  +D   + +    +++      +   +L  
Sbjct: 521 LAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAG 580

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L+  LF    +  V  +     S    + +  +A    L R+      +
Sbjct: 581 RTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGL 638

Query: 290 LKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +    GR+  +    GA+ TGR S      QN+P +          
Sbjct: 639 TKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------- 690

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G+KL+  D + IE R++A ++G+   + AF 
Sbjct: 691 -----------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFE 733

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           +G D++  T A+ F   ID VS ++R   K +   L Y       A+            +
Sbjct: 734 SGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYI 793

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498
             +         F +  + ++      +                          A+   +
Sbjct: 794 ALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPM 853

Query: 499 IGTACELVKKA------WRAKH----QGVLQLWKDL 524
            GTA +++K+A      W A H    + +LQ+  +L
Sbjct: 854 QGTAADIIKRAMVSVDGWIAGHAQRAKMILQVHDEL 889



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 610 LCEGMKNATK--NGY----DIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M +      G+     ++L VHDE+V E       + +  + + M 
Sbjct: 861 IKRAMVSVDGWIAGHAQRAKMILQVHDELVFEADTDFVDTLLSEVTTRMA 910


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/567 (17%), Positives = 202/567 (35%), Gaps = 98/567 (17%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            +  ID ET S       +    V   A+ A      + +D+ P +L     +  + + L
Sbjct: 346 KRFAIDTETTSLDYRVAEMVGFSVAFDAQDAYYVPLTHDYDNAPEQL----NREQILAQL 401

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLA 115
              L DETV  + H+  ++  +F       +  K W   ++LA    N + +      +A
Sbjct: 402 KPILEDETVHKIGHHLKYDAHIFANH---SVELKGWYFDTMLASYVINSVATRHGMDDVA 458

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  HLT   E   GK    + F +  I+   +                Y   D   T 
Sbjct: 459 RVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAEDAHVTY 502

Query: 172 ELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKL 220
            L++    +L    + E  L+ ++         + + G ++D   + +L     +    L
Sbjct: 503 RLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTETILGL 562

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +   ++L      +      +   LF   G+     +  T +   S S + ++   +   
Sbjct: 563 ENQAIELAGESF-NVSSPKQVGEILFDKMGLKGGKKT-ATGQHSTSESILEKVEHPIAEV 620

Query: 281 RLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L     + LK    + L E   ++     T      + TGR S      QN+P +    
Sbjct: 621 ILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQALTATGRLSSSDPNLQNIPIR---- 676

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                               G     +R   IA  G+ L+ AD + IE R++A  + ++ 
Sbjct: 677 --------------------GEIGRQIRKAFIAPEGRILLAADYSQIELRLMAHFSQDEA 716

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------------- 444
            + AF +G+D++  T A+  N P+++V+ +QR   K +   L Y                
Sbjct: 717 LLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRE 776

Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEF 492
            ++ +     H    + ++ Q  +  +  + +              ++ ++ ++      
Sbjct: 777 ESQNYIKQYFHRYPGIYEYMQRTRQVALEQGFVETILGRRLYTPDIDARNMMVRKGAERA 836

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519
           A+   L G+A +++K A     + + +
Sbjct: 837 AINAPLQGSAADIIKLAMIEVDKMLPK 863


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 102/574 (17%), Positives = 189/574 (32%), Gaps = 115/574 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRT--EQSAMPSD-- 56
           + +D ET S  PL           A +    +A +      V +       +  +P D  
Sbjct: 318 ISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDEV 367

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              +   L D T+  V  N  ++ ++ ++     I  +  +  ++L      P++  +  
Sbjct: 368 VAQVQPLLEDATLAKVGQNLKYDALVLRRA---GIALRGVVADTMLQSYLLYPAARSHGL 424

Query: 114 LALNFSEHLTKM-------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            AL       KM         GK  I  F + ++D                    Y   D
Sbjct: 425 DALAADHLGYKMISYSEVAGTGKKQIG-FDEVALDVATR----------------YAAED 467

Query: 167 VEATRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            + T +L++R     D          E  L  +   +   G R+D + +  L    +   
Sbjct: 468 ADITLQLYQRFDAELDGTLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSI 527

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+L++ I +L      +      L + LF    +     ++       +   +  LA   
Sbjct: 528 KQLEQQIYELAGEEF-NINSPKQLGVILFEKLDLPHGKKTK--TGWSTAVDVLKNLADKH 584

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +  L     ++ KL     + L   +  D GR+  +      + TGR S      QN+P
Sbjct: 585 DVVALILQYRSLAKLKGTYTDALPLLIHPDSGRIHTSFN-QAVTATGRLSSSDPNLQNIP 643

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   +   G+ L+ AD + IE RV+A 
Sbjct: 644 IRS------------------------EEGRAIREAFVPDAGQVLLAADYSQIELRVMAH 679

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
           +A E    ++F  GEDI+  T ++ F+   D V  E R   K +   + Y  G    AK 
Sbjct: 680 MADEPILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINFGVLYGMGAFSLAKD 739

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWE---------------------QAESHHLWMQ 486
                      +  + +   +   F + +                        S +  ++
Sbjct: 740 LGISNKEAKQYIDHYFERYPAVLEFIEQQKQFGREHLYVETLLGRRCAVSDINSKNGQVR 799

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                 AV   + G+A +++K A    HQ +  L
Sbjct: 800 SYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDL 833



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 586 QLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNGYDI------VLTVHDEIVSETPD 638
           +  + R+Y  +   N  VQ  + DI+   M    +   D+      VL VHDE+V + P 
Sbjct: 794 KNGQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHDELVFDVPK 853

Query: 639 TPYFSVGTLCSL 650
                V  + +L
Sbjct: 854 DE---VDDVVAL 862


>gi|162149305|ref|YP_001603766.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/515 (16%), Positives = 155/515 (30%), Gaps = 82/515 (15%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           DD P  +  + E     + L   L D +V+ +  N+ F+ ++  +               
Sbjct: 401 DDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAGAPQPAPVDDTMLI 460

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
             A+  G      +    L         +E         +  +     D  RA       
Sbjct: 461 SYAQFAGRHGQGMDELSRLYLGHTPIPYDEVTGT----GRNRVPFARVDVARATA----- 511

Query: 158 LFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
               Y   D + T  L+  L P            + ER L  +   +   G  ID+  + 
Sbjct: 512 ----YAAEDADVTLRLWLSLRPTLRIHHALALYEELERPLVAVLADMERAGIAIDVVELR 567

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++    A    +++ +I  L      +      L   LF   G+      +         
Sbjct: 568 RMSADFATRMAQMEAEIQALAGRSF-NVGSPKQLGEILFDEMGLPGGKRMKSG-AWGTDS 625

Query: 268 SNITQLAKD------LILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRW 320
           S +  LA         IL     +       + L +    D  R+  + Q    + TGR 
Sbjct: 626 SVLQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTSFQM-AITSTGRL 684

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +                              +R   +A+ G  L+ AD
Sbjct: 685 SSNEPNLQNIPIRT------------------------EEGGRIRRAFVAAPGHVLLSAD 720

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA +A      +AFA G+DI+  T ++ F  PI+ +    R   K +   + 
Sbjct: 721 YSQIELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINFGII 780

Query: 441 YQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------ 484
           Y   A    +            +  +         + +  + E+                
Sbjct: 781 YGISAFGLGRQLGIPPGEARAYIDAYFARYPGIRAYMETVKQEAKDQGYVTTPFGRRCWV 840

Query: 485 ---------MQDQYPEFAVKDKLIGTACELVKKAW 510
                     +      A+   L G A +++K+A 
Sbjct: 841 PGIADRSAVRRAYAERQAINAPLQGGAADIIKRAM 875


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%)

Query: 1   MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49
           M KL        D ET   +      VGV ++A            + +   P +L    +
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107
           +  +  +L   L D     +  N  ++  +  K  G+ I +K +   ++LA    N   +
Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 LAL +         G+ ++       +          NHV        Y   D 
Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL +            E  L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L++   KL       S     L+  L+    + +   + G   S  + + +  LA D
Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L ++     ++ KL T     L   V    R   T      + TGR S      QN+P
Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G ++V AD + +E R++A 
Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444
           I+ +   IKAF    DI+  T A+ F   +++V+ EQR   K +   L Y          
Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750

Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493
             + + +A             + ++ Q ++  +  + + E      +++ D +       
Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810

Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536
                  +   + GTA +++K A      W  K+      ++Q+  +L    A    E  
Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEMAEKDLEKV 870

Query: 537 SISARRVAN 545
               ++   
Sbjct: 871 IPQIKKAME 879


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/554 (16%), Positives = 179/554 (32%), Gaps = 80/554 (14%)

Query: 7   DIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET +  P    L  + +    ++A      +A++  PV+L    ++ A+   L     
Sbjct: 319 DTETTALDPMKARLVGISLALEPDEAFYIPVGHAYEGAPVQL----DRDAVLRILAPAFE 374

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SSLKNACLAL 116
           +  +  +  N  ++  +  +  G  I    +  T + A              L    L  
Sbjct: 375 NTKITKIGQNVKYDWTVLSRC-GFKIDGPVF-DTMIAAYLLNPTRRSYGLDRLAADYLNH 432

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               +      GK           ++ PY    A+             R +E   +    
Sbjct: 433 RMISYQDVTGTGKNAKCFSAVPLEEAIPYAAEDADIT-------FSLHRLLEKELKQGGL 485

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              L   E  L  +   +   G  +D + +  L + +  + +KL+ +I  L      +  
Sbjct: 486 FELLETIEMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEKLEGEIYGLAGETF-NIN 544

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL---- 292
               L + LF   G+     ++           +T LA    L  L      + KL    
Sbjct: 545 SPQQLGVILFEKLGLPTQKKTKKKTGYSTDADVLTTLADHHELPALLLRHRTLAKLKSTY 604

Query: 293 -NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            + L+E +    GR+  +     A+ TGR S      QN+P +                 
Sbjct: 605 ADALAELILPETGRIHTSFN-QTATATGRLSSTDPNLQNIPIRT---------------- 647

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +   G   V AD + +E R+LA  + +   I+AF N EDI+ 
Sbjct: 648 --------EEGRQIRKAFVPRPGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHT 699

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
            T ++ F    + ++++ R   K +   + Y     G A+            +  +    
Sbjct: 700 RTASEVFQLFPEMITEDVRRQAKAINFGIVYGISPFGLARDLGISQKMAKNYMDSYFSRY 759

Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505
                F D   A++                      +  +Q      A+   + GTA ++
Sbjct: 760 SRVKEFMDKAIADARETGQTRTMFGRIRYLPDIDSPNRTLQGYAERAAINTPIQGTAADI 819

Query: 506 VKKAWRAKHQGVLQ 519
           +K A  A  + + +
Sbjct: 820 MKLAMIATEKALAK 833



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642
            + Y  +   N  +Q  + DI+   M    K          ++L+VHDEIV E P     
Sbjct: 799 LQGYAERAAINTPIQGTAADIMKLAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVK 858

Query: 643 SVGTLCS-LM 651
           +V  L + +M
Sbjct: 859 TVSALVADIM 868


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%)

Query: 1   MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49
           M KL        D ET   +      VGV ++A            + +   P +L    +
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107
           +  +   L   L D     +  N  ++  +  K  G+ I +K +   ++LA    N   +
Sbjct: 372 KEEVLRKLKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 LAL +         G+ ++       +          NHV        Y   D 
Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL +            E  L  +   +  RG  +D  ++      ++  
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELSGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L++   KL       S     L+  L+    + +   + G   S  + + +  LA D
Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L ++     ++ KL T     L   V    R   T      + TGR S      QN+P
Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G ++V AD + +E R++A 
Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444
           I+ +   IKAF    DI+  T A+ F   +++V+ EQR   K +   L Y          
Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750

Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493
             + + +A             + ++ Q ++  +  + + E      +++ D +       
Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810

Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536
                  +   + GTA +++K A      W  K+      ++Q+  +L    A    E  
Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870

Query: 537 SISARRVAN 545
               ++   
Sbjct: 871 IPQIKKAME 879


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 198/627 (31%), Gaps = 112/627 (17%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
            +D ET S  P    L  + +     +A     ++    E     D      +   +   
Sbjct: 391 ALDTETTSLDPMQAELCGIALATAPNRAAYLPLSHKNGAE-----DLLGGGMVDGQIRVE 445

Query: 59  -------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
                    L+D +V+ +  N  ++ +L  +  GI+I               G  +   +
Sbjct: 446 EALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH-GIEIAPYDDTMLISYVLEAGTQAHGMD 504

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           A             +E         K + D               +    Y   D + T 
Sbjct: 505 ALAERWLGHTPVSYKEVTGSGR--SKVTFDMV-----------GLERATVYASEDADVTL 551

Query: 172 ELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L+K L P              ER +  +   +  RG  +D  ++ ++    AQ    ++
Sbjct: 552 RLWKVLKPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSGDFAQTAAAME 611

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILN 280
           E+I +L  G          L   LF   G+     ++   +   S   + +LA     L 
Sbjct: 612 EEIYRLAGGRFTI-GSPKQLGDILFGRMGLPGGAKTKSG-QWSTSAQVLEELAAAGHELP 669

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           R       + KL     + L   +    GR+  +     ++ TGR S      QN+P + 
Sbjct: 670 RKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYSL-ASTTTGRLSSSEPNLQNIPVRT 728

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+  IA+ G KL+ AD + IE RVLA +A 
Sbjct: 729 ------------------------PEGRKIRTAFIAAPGYKLISADYSQIELRVLAHVAD 764

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
                KAFA G DI+  T ++ F  P++ +  E R   K +   + Y     G A     
Sbjct: 765 IPELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSI 824

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                G  ++++ +       + +                     + +  S +  ++   
Sbjct: 825 PRDEAGAYIKRYFERFPGIRDYMERTKAFCREKGYVETIFGRRAHYPEIRSSNPSVRAFN 884

Query: 490 PEFAVKDKLIGTACELVKKAWRA-----KHQGVL------QLWKDLTEGFACVVQEGGSI 538
              ++   + G+A +++++A           G++      Q+  +L         E    
Sbjct: 885 ERASINAPIQGSAADIIRRAMMRMEAALADSGLVDVKMLLQVHDELVFEAPEDAIERAIP 944

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSS 565
             R V        R     + +   ++
Sbjct: 945 VIRTVMEGAAWPARSLSVPLKVDARAA 971


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/598 (18%), Positives = 207/598 (34%), Gaps = 102/598 (17%)

Query: 2   SKLFIDIETRSPQPLPK--VGV-WAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
               +D+ET S  PL    VG+ +++ E  A      + +   P +L     +  +   L
Sbjct: 314 RAFAVDLETTSLNPLEAEIVGISFSFREHEAYYIPVGHRYPGAPHQL----SRDDVLGAL 369

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLA 115
              L D     +  N  ++  + ++  GID+    W C ++LA     P+  S     LA
Sbjct: 370 KPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGI-W-CDTMLASYLLNPTRTSQGLDSLA 426

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           + F +H        A +A   K   +    +  +A           Y   D +AT  L K
Sbjct: 427 VEFLDHRMI---SYAEVAGKGKEQKNFAQVEVEKA---------SVYSCEDADATYLLHK 474

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             +P            + E  L  +   +   G ++DL L+ +L +    +   L+ +I 
Sbjct: 475 LFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLADLEREIF 534

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L  G   +      L   LF    + +   ++       +   + +LA +  + RL   
Sbjct: 535 ALAGGEF-NVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEIARLILQ 593

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             ++ KL     + L + V +  GR+  +      + TGR S      QN+P +      
Sbjct: 594 YRSLSKLKSTYTDALPKLVDAASGRVHTSYN-QAVTNTGRLSSSEPNLQNIPIRS----- 647

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA+ G  L+ AD + IE RVLA ++ +    
Sbjct: 648 -------------------EEGRSIRHAFIAAEGCLLLSADYSQIELRVLAHLSADRVFC 688

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AFA  EDI+  T A+ F      V++E R   K +   + Y  G    A+         
Sbjct: 689 DAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIYGQGAFSLARELGVSTKVA 748

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  +        TF D                         +S +  ++      AV
Sbjct: 749 KEFIDNYFARHAGARTFLDGCVREAEDNGYVTTILGRRLPIPDIKSSNGNIRAFAQRNAV 808

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              + G+A +++K+A             K + ++Q+  +L        +    +  + 
Sbjct: 809 NYPIQGSAADIIKQAMVRVVDRMEREGMKSRLIMQVHDELVFEVPEEEKLAMEMLVKH 866


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 172/502 (34%), Gaps = 92/502 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L +  V+ +AHN+ ++ ++  +     I       T  L+     GL     +   
Sbjct: 414 LKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCLSYVLEGGLHGHGLDELA 473

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            L+      K EE    GK  I  F +  ID                    Y   D + T
Sbjct: 474 TLHLGHTNIKFEEVCGKGKTQIG-FAEAPIDKA----------------CAYAAEDADVT 516

Query: 171 RELFKRLIP--LSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L   L P  + +         ER L  +   +   G ++D  ++  +    A+    L
Sbjct: 517 FRLHALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTILRDMSADFAKRLVTL 576

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH--SNITQLA 274
           + +I +       +      L   LF   G+      +    GT   +L    +  +  A
Sbjct: 577 EGEIHEQAGEPF-NVGSPKQLGEILFDKMGLAGGKKGKTGAYGTGADVLETLAAEGSDFA 635

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           + ++  R  +   +    + L E ++   GR+  +    GA+ TGR S      QN+P +
Sbjct: 636 RKVLDWRQIAKLKST-YTDALVETINAETGRVHTSYSMVGAA-TGRLSSNDPNLQNIPIR 693

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R+  +A  G  L+  D + IE R++A IA
Sbjct: 694 T------------------------EEGRKIRTAFVAEPGNVLLSVDYSQIELRLVADIA 729

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           G +   KAF +G DI+  T ++ F  P+ +++ + R   K +   + Y     G A+   
Sbjct: 730 GIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQLS 789

Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488
           T  +     +  + +       +                        +     +  M++ 
Sbjct: 790 TSQAEAQAYINAYFERFPGIRDYMTEMKTFAREHGFVETKFGRKVHIQAIRDKNPAMRNF 849

Query: 489 YPEFAVKDKLIGTACELVKKAW 510
               A+   + GTA +++K+A 
Sbjct: 850 GERAAINAPIQGTAADVIKRAM 871



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM--T 652
           +Q  + D++   M          ++   ++L VHDE++ E P+    +   L   +M   
Sbjct: 859 IQGTAADVIKRAMVRLPVALDKAQSKARMLLQVHDELLFEVPEDDVEATSALVREVMEGA 918

Query: 653 KNPSWAKGLPLKAE-GY 668
             P     +PL AE G+
Sbjct: 919 AAPQLNLSVPLIAEAGW 935


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/587 (16%), Positives = 193/587 (32%), Gaps = 97/587 (16%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           +  D ET S       L  +     A +A     A+++   P +L    ++ A+   L  
Sbjct: 352 IAFDSETTSIDAQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQL----DRDAVLKALKP 407

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D     V  ++ ++  +        I  +     ++L         L +     +  
Sbjct: 408 ILEDPAKAKVGQHAKYDINVLANA-STPIAVQGVAFDTMLESYV-----LDSTATRHDMD 461

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI- 178
               K   G + I  F   +               A +  G Y   D + T  L + L  
Sbjct: 462 SLALKYL-GHSTIR-FEDIAGRGAKQ---LTFDQIALEQAGPYAAEDADVTLRLHQELWG 516

Query: 179 ----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                      L + E  L  +   I   G  +D  L+ +    + ++  +L+    ++ 
Sbjct: 517 RLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELERKAFEIA 576

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 +     L + L+   G  ++  +     S           +D  L ++     +
Sbjct: 577 GEEFNLA-SPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDFELPKVLMQYRS 635

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L E ++   GR+  +      + TGR S      QN+P +         
Sbjct: 636 LSKLKSTYTDKLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPIRT-------- 686

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G K++ AD + IE R++A +A ++  + AF
Sbjct: 687 ----------------AEGRRIRQAFVAPKGYKMMAADYSQIELRIMAHLAKDEGLLDAF 730

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +  D++  T A+ F   +++V+ +QR   K +   L Y       AK            
Sbjct: 731 RHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKEAQAY 790

Query: 459 LQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDK 497
           + ++        ++ +  +A+                     + +  M+      A+   
Sbjct: 791 IDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYLPEIHAQNQAMRKGAERAAINAP 850

Query: 498 LIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534
           + GTA +++K+A  A            + +LQ+  +L       + E
Sbjct: 851 MQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELVLEVREDLLE 897



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 18/96 (18%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
            RRL   ++       N A  +   R            +Q  + DI+   M         
Sbjct: 823 GRRLYLPEIHAQ----NQAMRKGAERAAINAP------MQGTAADIIKRAMIAVDDWLQG 872

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                 I+L VHDE+V E  +     V   L +LM 
Sbjct: 873 SGIDARIILQVHDELVLEVREDLLEEVGAQLKALMG 908


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 89/509 (17%), Positives = 166/509 (32%), Gaps = 69/509 (13%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           L D+  +    + L   L +  +  +  N  ++  +F    GI +    +  T + +   
Sbjct: 422 LPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQVQGVAF-DTMLESYVL 479

Query: 104 GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLF 159
                     LA  +  H T   E   GK      F K  +            V      
Sbjct: 480 NSTGRHNMDDLAERYLGHQTISFETLAGKGKNQLTFDKIPLAQAAEYAAEDADVTMKLHQ 539

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             + +  +E T  L        D E  L  +   I   G  ID   + K  +   +    
Sbjct: 540 TLWAE--LEKTPTLTTLFK---DIELPLVSVLSRIERNGVLIDAQALRKQSQEFGERLTA 594

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+    ++       +     L+  LF    + ++  +     S      + +LA D  L
Sbjct: 595 LEAKAHEIAGEAFNLA-SPKQLQEILFNKLHLPVLQKTPKGDPST-KEEVLEELAFDHEL 652

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +L      + KL     + L + ++   GR+  +      + TGR S      QN+P +
Sbjct: 653 PKLLVEHRGLAKLKSTYTDKLPQMINPHTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR 711

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G +++ AD + IE R++A ++
Sbjct: 712 ------------------------NEEGRRIRQAFVARDGYRIIAADYSQIELRIMAHLS 747

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFK 449
           G+     AF  G DI+ +T ++ F  P++ VS EQR   K +   L Y   A    +   
Sbjct: 748 GDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRSAKAINFGLIYGMSAFGLSRQLA 807

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + Q   +  TF                           +S +   +  
Sbjct: 808 ISRMEAKKYMDLYFQRYPNVQTFMHDIQEKAKAQGFVETLFGRRLYLPDIKSGNASRRKG 867

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
               A+   + GTA +++K+A       +
Sbjct: 868 AERVAINAPMQGTAADIIKRAMIDIDHVI 896


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 182/572 (31%), Gaps = 103/572 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ ++  P +L    ++ A+   L   L D     V  N+ ++  +        
Sbjct: 364 AAYVPLAHDYEGAPAQL----DRDAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142
                   T + +      +       LA  + +H T   E   GK      F + ++D 
Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDK 479

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
                            G Y   D + T  L + L             L D E  L  + 
Sbjct: 480 A----------------GPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVL 523

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D  L+      +  +  +L++   +L      +      L   L+   G+
Sbjct: 524 AKIERQGALVDAALLHVQSGELGVKMGELEQRAYELAGEEF-NLGSPKQLGAILYDKLGM 582

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S               L  +     ++ KL     + L   ++   GR+
Sbjct: 583 PVLSKTAKGQPSTAEAVLDELALLGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRI 642

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             + Q    + TGR S      QN+P +                              +R
Sbjct: 643 HTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRIR 677

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IAS G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   +  V+
Sbjct: 678 QAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALQDVT 737

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            +QR   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 738 TDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAA 797

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++K+A           
Sbjct: 798 EQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVNVDNWLSES 857

Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARR 542
               + +LQ+  +L       + +      R+
Sbjct: 858 GLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+      L        R            +Q  + DI+   M N  
Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVNVD 851

Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
                      ++L VHDE+V E  +     V   +   M++ 
Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQA 894


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  QA      + +   PV+L DRT+     + L   L 
Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQ---ALAQLAPLLT 416

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++                    +G      ++          
Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYAEDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+          +         D + T  L + L P   
Sbjct: 477 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLT 523

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + +    +++      +   +L    
Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 583

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S    + +  +A    L R+      + K
Sbjct: 584 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 641

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E +    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 642 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 691

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AF +G
Sbjct: 692 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 736

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 737 ADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 796

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 797 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 856

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 857 TAADIIKRAMVNVDGWIADHAQRAKMILQVHDEL 890



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 742 ATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 801

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 802 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 861

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M N             ++L VHDE+V E       + +  + + M 
Sbjct: 862 IKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 911


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 107/590 (18%), Positives = 200/590 (33%), Gaps = 109/590 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S + +    VG+    E  +A     A+ + D PV+L     +  +   L  +
Sbjct: 346 AVDTETTSLEAMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQL----SRQHVLEKLKPW 401

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LNFS 119
           L D +   +  +  ++  +F    G+ +   +   T + +             LA  +  
Sbjct: 402 LEDASKPKLGQHLKYDSHIFANY-GVRLAGVK-HDTLLESYVFESHRPHDMDSLAARHLE 459

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  E  GK      F + +I                +   EY   D E T  L + 
Sbjct: 460 RKTITYAEVCGKGASQIGFNEVAI----------------ERATEYAAEDAEVTLALHQA 503

Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + P  +            E    ++ Q I   G  ID + + +    + +   ++++   
Sbjct: 504 MWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERLGQQSHDLGKRMLEIEQQAY 563

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L      +      L   LF    + +V  +     S      + +LA+D  L ++   
Sbjct: 564 DLAGQPF-NLNSPKQLGEILFGKLELPVVKKTASGAPST-DEEVLQKLAEDYPLPKVLLD 621

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+   GR+         + TGR S      QN+P +      
Sbjct: 622 YRGLAKLKSTYTDKLPKMVNPATGRVHTNYA-QAVAVTGRLSSNDPNLQNIPIRT----- 675

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  G  +V AD + IE R++A I+ ++  +
Sbjct: 676 -------------------AEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENML 716

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           KAFAN EDI+  T A+ F    ++V  EQR   KV+   L Y       A       +  
Sbjct: 717 KAFANNEDIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAA 776

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAV 494
            + + ++         + D  + ++             LW+          +      A+
Sbjct: 777 QMYIDKYFMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAI 836

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
              + GTA +L+K A  A          + + ++Q+  +L         E
Sbjct: 837 NAPMQGTAADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELE 886



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + D++   M               +++ VHDE+V E P      V   L  LM
Sbjct: 841 QGTAADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELM 896


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 198/611 (32%), Gaps = 125/611 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60
           D ET S  P+           A I   +++ +               MP+ L +      
Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D     +  +  ++  +     GI +       T + +       +     LAL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                   K E+  GK      F +  +                    EY   D + T +
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 502

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L   L P             D E  + L+ + +   G  ID D + +    IA     L+
Sbjct: 503 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 562

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++   L  G   +      +    F    + +V  +     S      + +LA+D  L +
Sbjct: 563 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 620

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L      + KL     + L   V+ D GR+         + TGR +      QN+P +  
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 679 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A      
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 775

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490
                L + ++       + + +  +  +             LW+          +    
Sbjct: 776 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 835

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGG 536
             A+   + GTA +L+K +  A            + ++Q+  +L          +V+E  
Sbjct: 836 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 895

Query: 537 SISARRVANVP 547
                 VA + 
Sbjct: 896 PEMMCGVAKLK 906



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 101/581 (17%), Positives = 193/581 (33%), Gaps = 113/581 (19%)

Query: 7   DIETRSPQPLPK---VGVWAYAE--QAVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQY 60
           D ET S     +   VGV    E  QA      +++   P +L  D    +  P      
Sbjct: 340 DTETTS-LDAQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLGALKP-----L 393

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS 119
           L D     +  +  ++  +     GI++    +  T + +      +       LAL + 
Sbjct: 394 LEDPAKTKICQHGKYDMNVL-MHYGIEMRGMAF-DTMLESYVLDATATRHDMDSLALKYL 451

Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
              T   +   GK      F + +I                +  G Y   D + T  L +
Sbjct: 452 GRGTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDADVTLRLHQ 495

Query: 176 RLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L+            L++ E  L  +   I   G  +D  L+ +    +  +  +L+ + 
Sbjct: 496 TLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREA 555

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             +      +      L   L+   G  ++  + G   S           +D  L ++  
Sbjct: 556 FDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIM 614

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L + ++   GR+  +      + TGR S      QN+P +     
Sbjct: 615 QHRSLSKLKGTYTDKLPQQINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT---- 669

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A+ G KL+ AD + IE R++A +A +   
Sbjct: 670 --------------------AEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGL 709

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF N  D++  T A+ F  P+++VS +QR   K +   L Y       AK        
Sbjct: 710 LHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKE 769

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               + ++         + +                       +  S +  M+      A
Sbjct: 770 AQEYIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTA 829

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +   + GTA +++K+A  A            + +LQ+  +L
Sbjct: 830 INAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDEL 870


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 194/560 (34%), Gaps = 100/560 (17%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + ID ET S       L  +       +A     A+ + D P +L D     A+ + L  
Sbjct: 368 IAIDTETTSLDYMTAKLVGISFAVEVGKAAYLPLAHDYLDAPEQL-DF--DEAI-AKLKP 423

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118
            L D  +  V  N  ++  +F   +GI +    +  T + +   N + S      LAL +
Sbjct: 424 LLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVAF-DTMLESYVFNSVASKHNMDDLALKY 481

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +++                   Y   D + T  L 
Sbjct: 482 LGHKNISFEEIAGKGAKQLTFNQIDLETAA----------------PYAAEDADITLRLH 525

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L              +D E  L  +   I  +G  ID  ++ +  + IA    KL++D
Sbjct: 526 QHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISIDKLEQD 585

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++       S     L+   F   G  ++  +     S      + +LA D  L ++ 
Sbjct: 586 AFEIAGETFNLS-SPKQLQALFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 643

Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V++  GR+  +     A+ TGR S      QN+P +    
Sbjct: 644 LQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 699

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  GKK++ AD + IE R++A ++ +  
Sbjct: 700 ---------------------EEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKG 738

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AFA G+DI+  T A+ F     +V+ EQR   K +   L Y       A+       
Sbjct: 739 LLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRG 798

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + +  +AE+                      +   +      
Sbjct: 799 EAQKYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERA 858

Query: 493 AVKDKLIGTACELVKKAWRA 512
           A+   + GTA +++KKA   
Sbjct: 859 AINAPMQGTAADIIKKAMIN 878



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M N        T     +++ VHDE+V E       ++   +C +M   
Sbjct: 865 QGTAADIIKKAMINIASWIESETHGEITMIMQVHDELVFEVDSDKAEALKEQICKMMADA 924

Query: 655 PSWAKGLPLKAEG 667
            S    + L AEG
Sbjct: 925 VS--LDVELLAEG 935


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 187/553 (33%), Gaps = 79/553 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L +   D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 A---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVE 168
           +   L      +      GK               Y    A+   + +  F    ++D  
Sbjct: 431 SKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQD-- 488

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              ++  +L    + E  L ++   +   G +ID   +++    +    K+L+     L 
Sbjct: 489 ---KVLYKLY--CELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCYNLA 543

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S     LR  LF   G+  V  +    +   S   + QLA+D  +  L      
Sbjct: 544 GQEFNLS-SPVQLREILFEKMGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KL     + L + + ++GR+  +    G + TGR S      QN+P +          
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS--------- 651

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA NG  +V AD + IE R++A ++ +   +KAF 
Sbjct: 652 ---------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
              DI+  T A+     ID+VS EQR   K +   L Y       A+  +   +     +
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYI 756

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
             +     S   +                         +  S ++  ++     A+   +
Sbjct: 757 DIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPM 816

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            GTA +++KKA    +  + Q        +   ++    +    V  V +  +      +
Sbjct: 817 QGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEEIVAKI 869

Query: 559 HIVLPSSRRLVYS 571
             ++ ++ +L   
Sbjct: 870 KSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 198/611 (32%), Gaps = 125/611 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60
           D ET S  P+           A I   +++ +               MP+ L +      
Sbjct: 354 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 403

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D     +  +  ++  +     GI +       T + +       +     LAL
Sbjct: 404 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 461

Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                   K E+  GK      F +  +                    EY   D + T +
Sbjct: 462 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 505

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L   L P             D E  + L+ + +   G  ID D + +    IA     L+
Sbjct: 506 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 565

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++   L  G   +      +    F    + +V  +     S      + +LA+D  L +
Sbjct: 566 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 623

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L      + KL     + L   V+ D GR+         + TGR +      QN+P +  
Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 681

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 682 -----------------------TEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A      
Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 778

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490
                L + ++       + + +  +  +             LW+          +    
Sbjct: 779 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 838

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGG 536
             A+   + GTA +L+K +  A            + ++Q+  +L          +V+E  
Sbjct: 839 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 898

Query: 537 SISARRVANVP 547
                 VA + 
Sbjct: 899 PEMMCGVAKLK 909



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 818 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 868

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 869 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 903


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 198/611 (32%), Gaps = 125/611 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60
           D ET S  P+           A I   +++ +               MP+ L +      
Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D     +  +  ++  +     GI +       T + +       +     LAL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                   K E+  GK      F +  +                    EY   D + T +
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 502

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L   L P             D E  + L+ + +   G  ID D + +    IA     L+
Sbjct: 503 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 562

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++   L  G   +      +    F    + +V  +     S      + +LA+D  L +
Sbjct: 563 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 620

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L      + KL     + L   V+ D GR+         + TGR +      QN+P +  
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 679 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A      
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 775

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490
                L + ++       + + +  +  +             LW+          +    
Sbjct: 776 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 835

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGG 536
             A+   + GTA +L+K +  A            + ++Q+  +L          +V+E  
Sbjct: 836 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 895

Query: 537 SISARRVANVP 547
                 VA + 
Sbjct: 896 PEMMCGVAKLK 906



 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 109 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 158

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 159 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 215

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 216 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 260

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 261 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 320

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 321 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 378

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 379 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 438

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 439 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 474

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 475 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 534

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 535 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 594

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 595 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 654

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 655 NEVEKTIPVVRRVME 669


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/573 (18%), Positives = 196/573 (34%), Gaps = 112/573 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQL----DRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +                Y   
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499

Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214
           D   T  L++    +L P  + E  L+ ++         + + G R+D   + KL    A
Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFA 559

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +  + L+   +++ D     +     +   LF   GI     +  T +   S S + ++ 
Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617

Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L    L   G A LK    + L E   +D     T      + TGR S      QN+P
Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G+ L+ AD + IE R++A 
Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
            + +D  + AF +G+D++  T A+     I+ V+ +QR   K +   L Y        + 
Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                      ++Q+ Q       +                           ++ ++ ++
Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                 A+   L G+A +++K A     + + +
Sbjct: 834 KAAERAAINAPLQGSAADIIKIAMIEVDKILPK 866


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/573 (18%), Positives = 196/573 (34%), Gaps = 112/573 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRD 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +                Y   
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499

Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214
           D   T  L++    +L P  + E  L+ ++         + + G R+D   + KL    A
Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFA 559

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +  + L+   +++ D     +     +   LF   GI     +  T +   S S + ++ 
Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617

Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L    L   G A LK    + L E   +D     T      + TGR S      QN+P
Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G+ L+ AD + IE R++A 
Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
            + ++  + AF +G+D++  T A+     I+ V+ +QR   K +   L Y        + 
Sbjct: 714 FSQDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                      ++Q+ Q       +                           ++ ++ ++
Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                 A+   L G+A +++K A     + + +
Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKILPK 866


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 207/605 (34%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D +   +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 410 DASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVR 467

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                +   EY   D + T +L   L 
Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPL----------------EQASEYAAEDADITLQLHHALY 511

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA    +L++    L
Sbjct: 512 PQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIELEQQAYGL 571

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+   GR+         + TGR +      QN+P +        
Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FANGEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 725 FANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +A +             LW+          +      A+  
Sbjct: 785 YIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ EG   +V+E        
Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEGELSIVREKLPEMMCG 904

Query: 543 VANVP 547
           VA + 
Sbjct: 905 VAKLK 909


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/550 (18%), Positives = 185/550 (33%), Gaps = 78/550 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L + T+  V  N  ++  +F +  GID+    +  T + +             LA 
Sbjct: 411 LKPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNMDDLAK 468

Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H T   E   GK      F +  ++           V        + K   E T E
Sbjct: 469 RYLGHQTISFEEIAGKGKNQLTFNQIQLEQAAEYAAEDADVTMKLQQVLWEKLSKEPTLE 528

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
              +L    + E  L  +   +  RG  ID D +      IA    +L+E    L     
Sbjct: 529 ---KLFK--EMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLAGQPF 583

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
             +  T  L+  LF   G+ ++  +     S  +   + +LA    L ++      + KL
Sbjct: 584 NLA-STKQLQEILFDKLGLPVIQKTPKGAPST-NEEVLEELAFSHELPKVLVEHRGLSKL 641

Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L + V+   GR+  +      + TGR S      QN+P +             
Sbjct: 642 KSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------------- 687

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   IA  G  +V AD + IE R++A ++ +   I AF  G+
Sbjct: 688 -----------NEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGK 736

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
           DI+ +T A+ F   +D+V+ EQR   K +   L Y   A    +      +     +  +
Sbjct: 737 DIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLSIGRADAQSYMDLY 796

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +      TF                            S +   +      A+   + GT
Sbjct: 797 FKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAINAPMQGT 856

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A +++K+A     Q +           A ++Q    +    V  V    +  + + +   
Sbjct: 857 AADIIKRAMIQLDQKL-----QNDPDIAMIMQ----VHDELVFEVRSEKVEFYSKLIKTH 907

Query: 562 LPSSRRLVYS 571
           + S+  LV  
Sbjct: 908 MESAADLVVP 917


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/506 (18%), Positives = 169/506 (33%), Gaps = 90/506 (17%)

Query: 52  AMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
            +P     +   +    V+ +  N  ++ ++ K+ LGI++               G    
Sbjct: 447 PIPDAVAAIKPLMEHPGVLKIGQNLKYDWLILKR-LGIELGPYDDTMLVSYVLDAGASPH 505

Query: 109 LKNACLALNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             +            K EE  GK       KG I        +A           Y   D
Sbjct: 506 GMDPLSMRWLGHTPIKFEEVCGK------GKGQICFDRAAIDKATD---------YAAED 550

Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  L++ L P              ER L  +   + +RG  ID  ++ +L    AQ 
Sbjct: 551 ADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLSGEFAQG 610

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
             +L+ +I ++      +      L   LF    I     +  T         + +LA+ 
Sbjct: 611 MGRLEAEISEMAGETF-NPGSPKQLGDILFGKMQIPGGRKTP-TGAWSTGADVLEELAEQ 668

Query: 277 -LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
              L R       + KL     + L   V+   GR+  +     A+ TGR S      QN
Sbjct: 669 GHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFAL-AATTTGRLSSSEPNLQN 727

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   IA+ G KLV AD + IE R+L
Sbjct: 728 IPVRT------------------------EEGRKIRKAFIAAPGHKLVSADYSQIELRLL 763

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A IA      +AF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A
Sbjct: 764 AEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 823

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484
                     G  ++++ +       + D                     +    + +  
Sbjct: 824 NQLSIPREEAGAYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCHYPDISAKNPS 883

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAW 510
           ++      A+  +L G+A +++++A 
Sbjct: 884 IRAFNERAAINARLQGSAADIIRRAM 909



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 603 QAISRDILCEGMKN----ATKNGY--DIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655
           Q  + DI+   M        K G    ++L VHDE++ E PD     ++  +   M   P
Sbjct: 898 QGSAADIIRRAMARMDAALEKAGLSARMLLQVHDELIFEVPDDEIAATIPVVRETMELAP 957


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 182/540 (33%), Gaps = 94/540 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L D T   + H++ ++  +F    GI +       T + A        +    L
Sbjct: 383 ERLRGWLEDATRSKLLHHAKYDTHVFANE-GIALRGV-TEDTMLQAYVLESHRGVGLNDL 440

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A  +         G++ +     C        +D    +        G Y   D + T +
Sbjct: 441 AQRYL--------GRSGVNYEDLCGKGAKQIGFDEVAVD------RAGFYAAEDADFTLQ 486

Query: 173 LFKRLIP--------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           L + L P        +   E ++  +   I   G ++D + + +    + +E   L++  
Sbjct: 487 LHQALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQRA 546

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      L   LF   G+ +V  + G   S      +++LA+D  L ++  
Sbjct: 547 YELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLSKLAQDYPLPQVLL 604

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+        A  TGR +      QN+P +  +  
Sbjct: 605 EYRGLSKLKSTYTDKLPRMINPATGRVHTHYS-QAAVITGRLASSDPNLQNIPVRTLA-- 661

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   +A     LV AD + IE R++A ++ +   
Sbjct: 662 ----------------------GRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDANL 699

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
            +AFA GEDI+  T A+ F  P+ +V+ EQR   K +   L Y  G    A         
Sbjct: 700 QRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGVFGLASNLGITRDA 759

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++       + + D  +  +      +                          A
Sbjct: 760 AQAYIDRYFARYPGVARYMDDTRRLAREQGYVETVFGRRLQLPDIRAASGPRRQGAERAA 819

Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + GTA +L+K A           R   + ++Q+  +L      V  +    +  R+
Sbjct: 820 INAPMQGTAADLIKMAMVAVQDWLVSQRLSARLIMQVHDELVLEVPAVELDLVRETVPRL 879


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 105/552 (19%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLARTN--GLPSSLK 110
           L   L D T++ V  N  ++  +F +     L   I       T +L+     G  +   
Sbjct: 424 LKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQHNHGM 483

Query: 111 NACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +    L+F       +E    GK  I  F K  +     + T+            Y   D
Sbjct: 484 DVLSELHFDHKPIPFKEVAGTGKKQIT-FDKVPVP----EATK------------YAAED 526

Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  L+  L P              ER +  +   +   G  ++ + + +L    AQ 
Sbjct: 527 ADVTLRLWALLKPRLSAEGMATLYETIERPMVPVVAQMERAGIFVERETLSRLSGDFAQR 586

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
             + + +  +L      +      L   LF    +     ++ T         +  LA +
Sbjct: 587 MAQYEAEAYELAGREF-NMGSPKQLGEILFGEMELPGGKKTK-TGAWATGADALEDLAAE 644

Query: 277 -LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
              L ++     ++ KL     + L E ++   GR+  +    GA +TGR S      QN
Sbjct: 645 GHELPKILLGWRSLSKLKSTYTDALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQN 703

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R+  +A  G  L+ AD + IE R+L
Sbjct: 704 IPIRT------------------------EEGRKIRAAFVAQEGNVLIAADYSQIELRLL 739

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A I   D    AF N  DI+  T ++ F  PI+ +    R   K +   + Y     G A
Sbjct: 740 AHIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAINFGIIYGISAFGLA 799

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM--------- 485
           +            ++ ++        + D            E A    +WM         
Sbjct: 800 RQLGIPRGEASEYIKAYNAKFPGILKYMDEMKAFAREKGYVETAFGRRIWMKGINGKGPE 859

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
           +      A+   L G+A +++K+A             + + +LQ+  +L         E 
Sbjct: 860 RGFAERQAINAPLQGSAADIIKRAMVKMPAALEKSGLQAKMLLQVHDELIFEAPKAEAEK 919

Query: 536 GSISARRVANVP 547
                +++    
Sbjct: 920 TIKLVKKIMETA 931


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/561 (16%), Positives = 193/561 (34%), Gaps = 111/561 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +A+    + + D+ ++  +   L   L D T + +  ++ F+  +        
Sbjct: 374 AAYIPLTHAY----IGVPDQLDRDTVLRALKPLLEDPTKLKIGQHAKFDMNILANCAIDG 429

Query: 88  IPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---KMEEGKALIAR-FC 136
            P++          T + +      +       LA  + ++ T   +   GK      F 
Sbjct: 430 DPAQGITVQGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVSFQDIAGKGAKQLTFD 489

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL------IP-----LSDGER 185
           + ++                +  G Y   D + T  L + L      IP     L+D E 
Sbjct: 490 QIAL----------------EQAGPYAAEDADVTLRLHQELHAQLAAIPSLASVLTDIEM 533

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I  +G  +D  L+      +  +  +L+    ++      +      L   L
Sbjct: 534 PLVPVLARIERQGALVDAQLLGVQSIELGNKMVELERQAFEIAGEAF-NLGSPKQLGAIL 592

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKLNT-----LSEAV 299
           +   G+ ++  + G  ++  +   + +LA+D   L ++     ++ KL +     L E +
Sbjct: 593 YEKLGMPVLKKT-GKGQASTAEDVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQI 651

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 652 NPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPVRT------------------------ 686

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G KL+ AD + IE R++A ++ ++  + AF +  D++  T A+ F 
Sbjct: 687 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFK 746

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED 474
             + +V+ +QR   K +   L Y  GA+                +  +         + +
Sbjct: 747 VELGEVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDVYFARYPGVREYME 806

Query: 475 WEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAK 513
             +A++      + +                        A+   + GTA +++KKA    
Sbjct: 807 RTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAERTAINAPMQGTAADIIKKAMVRV 866

Query: 514 H----------QGVLQLWKDL 524
                      + +LQ+  +L
Sbjct: 867 DNWLTASGLDAKVILQVHDEL 887


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/525 (17%), Positives = 174/525 (33%), Gaps = 74/525 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L   L +  +  +  N  ++  +F    GI++    +  T + +             L
Sbjct: 442 SQLKPLLENPEIKKIGQNIKYDLTIFANN-GINMQGVTF-DTMLESYVLNSTGRHNMDDL 499

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A  +  H T   E   GK      F +  +            V        +  R+V  +
Sbjct: 500 AERYLGHHTIAFEDIAGKGKNQLTFDQIELKKAAEYAAEDADVTMKLHQTLW--REVAQS 557

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            EL K      + E  L  +   I   G  ID   +L   +  +Q+   L+    +L   
Sbjct: 558 PELVKL---YQEMELPLVSVLSRIERNGVLIDSRALLAQSKEFSQKLTALENKAHELAGQ 614

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               +  T  L+  LF   G+ ++  +     S  +   + +LA +  L +L      + 
Sbjct: 615 HFNLA-STKQLQEILFDKLGLPVLKKTPKGAPST-NEEVLEELAYEHELPKLLVEHRGLS 672

Query: 291 KL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + V+   GR+  +      + TGR S      QN+P             
Sbjct: 673 KLKSTYTDKLPQMVNRKTGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------- 718

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G K++ AD + IE R++A ++ +     AF+ 
Sbjct: 719 -----------VRNEEGRRIRQAFIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSE 767

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G+DI+ +T A+ F   ++ V+ EQR   K +   L Y       ++            + 
Sbjct: 768 GKDIHRSTAAEIFGLALENVTAEQRRSAKAINFGLIYGMSSFGLSRQLGIARGDAQRYMD 827

Query: 461 QFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLI 499
            + Q      TF                           +S +   +      A+   + 
Sbjct: 828 LYFQRYPGVQTFMTNIREKAKSQGYVETLFGRRLYLPDIQSANAMRRKAAERVAINAPMQ 887

Query: 500 GTACELVKKAWRAKHQGVLQ-----LWKDLTEGFACVVQEGGSIS 539
           GTA +++K+A     + +       +   + +     V+E     
Sbjct: 888 GTAADIIKRAMIDIDKAITDDPDILMIMQVHDELVFEVKEDKIEH 932



 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 15/117 (12%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
             V      +  + K   ++     RRL   D++   +          R           
Sbjct: 834 PGVQTFMTNIREKAKSQGYVETLFGRRLYLPDIQSANAM---RRKAAERVAINAP----- 885

Query: 601 IVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            +Q  + DI+   M +  K         +++ VHDE+V E  +         + SLM
Sbjct: 886 -MQGTAADIIKRAMIDIDKAITDDPDILMIMQVHDELVFEVKEDKIEHYSALIKSLM 941


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                          +
Sbjct: 101 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 150

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           + +P D     L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 151 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 207

Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              S     L+  +  H     K   G        K ++     D  RA           
Sbjct: 208 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 252

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 253 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 312

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ     +++I  L             L   LF   G+     ++ T +   S   + 
Sbjct: 313 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 370

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            LA +   L R       + KL     + L   ++   +   T     ++ TGR S    
Sbjct: 371 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 430

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R+  IA  G KL+ AD + IE
Sbjct: 431 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 466

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y    
Sbjct: 467 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 526

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G A          G  ++ + +       + +                     +    +
Sbjct: 527 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 586

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530
            +  ++      A+   + G A +++++A               + +LQ+  +L      
Sbjct: 587 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 646

Query: 531 VVQEGGSISARRVAN 545
              E      RRV  
Sbjct: 647 NEVEKTIPVVRRVME 661


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L        + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----SDEVLAKLTPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+  +L          +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L        + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----SDEVLAKLTPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVALEQEAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+  +L          +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 187/558 (33%), Gaps = 89/558 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L     D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +    EHL        +IA   K        D          ++  +Y   D + T  LF
Sbjct: 431 S---KEHLGIEPIAYTVIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478

Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                L +            E  L ++   +   G +ID   +++    +    K+L+  
Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L       S     LR  LF   G+  V  +    +   S   + QLA+D  +  L 
Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L + + ++GR+  +    G + TGR S      QN+P +     
Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA +G  +V AD + IE R++A ++ +   
Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +KAF    DI+  T A+     ID+VS EQR   K +   L Y       A+  +   + 
Sbjct: 692 LKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +     S   +                         +  S ++  ++     A
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++KKA    +  + Q        +   ++    +    V  V +  +  
Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864

Query: 554 HKRDVHIVLPSSRRLVYS 571
               +  ++ ++ +L   
Sbjct: 865 IVAKIKSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------TEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+  +L          +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 187/553 (33%), Gaps = 79/553 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L +   D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 A---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVE 168
           +   L      +      GK               Y    A+   + +  F    ++D  
Sbjct: 431 SKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQD-- 488

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              ++  +L    + E  L ++   +   G +ID   +++    +    K+L+     L 
Sbjct: 489 ---KVLYKLY--CELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKCYNLA 543

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S     LR  LF   G+  V  +    +   S   + QLA+D  +  L      
Sbjct: 544 GQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KL     + L + + ++GR+  +    G + TGR S      QN+P +          
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS--------- 651

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA NG  +V AD + IE R++A ++ +   +KAF 
Sbjct: 652 ---------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
              DI+  T A+     ID+VS EQR   K +   L Y       A+  +   +     +
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYI 756

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
             +     S   +                         +  S ++  ++     A+   +
Sbjct: 757 DIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPM 816

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            GTA +++KKA    +  + Q        +   ++    +    V  V +  +      +
Sbjct: 817 QGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEEIVAKI 869

Query: 559 HIVLPSSRRLVYS 571
             ++ ++ +L   
Sbjct: 870 KSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/577 (18%), Positives = 190/577 (32%), Gaps = 106/577 (18%)

Query: 7   DIETRSPQPLPKV--GVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL     G+   AE  QA      + +   P +L DRT+     + L   L 
Sbjct: 353 DTETDSLDPLQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQ---ALAQLAPLLT 408

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  +  +  +  ++  + ++                    +G      ++          
Sbjct: 409 DPALRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 468

Query: 123 TKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            K E+  GK     +F + S++    D TR            Y   D + T  L + L P
Sbjct: 469 VKYEDVCGKGAKQIKFAQVSLE----DATR------------YAAEDADITLRLHQVLGP 512

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        D E  L  +   I   G  +D   + +    +++      +   +L 
Sbjct: 513 KLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 572

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L+  LF    +  V  +     S    + +  +A    L R+      
Sbjct: 573 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRG 630

Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L E +    GR+  +    GA+ TGR S      QN+P +         
Sbjct: 631 LTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 683

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G+KL+  D + IE R++A ++G+   + AF
Sbjct: 684 ------------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVSAF 725

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G D++  T A+ F   ID VS ++R   K +   L Y       A+            
Sbjct: 726 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 785

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           +  +         F +  + ++      +                          A+   
Sbjct: 786 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 845

Query: 498 LIGTACELVKKA------WRAKH----QGVLQLWKDL 524
           + GTA +++K+A      W A+H      +LQ+  +L
Sbjct: 846 MQGTAADIIKRAMVSVDGWIAEHAQRALMILQVHDEL 882



 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 734 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 793

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 794 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 853

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M +             ++L VHDE+V E       + +  + + M   
Sbjct: 854 IKRAMVSVDGWIAEHAQRALMILQVHDELVFEADIDFVDTLLSEVTARMATA 905


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/592 (16%), Positives = 197/592 (33%), Gaps = 117/592 (19%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSL 74
           A+ + +   ++A           T         +  D     L   L +   + V  ++ 
Sbjct: 348 AQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKALKPLLENPNKLKVGQHAK 407

Query: 75  FERILFKKTL-----GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE 127
           FE  +             I  +     ++L         +      LAL +        +
Sbjct: 408 FETNILANCAIGGDQNNGILVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGQSKTDFQ 467

Query: 128 ---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179
              GK +    F + S+                +L G Y   D + T  L + L      
Sbjct: 468 DIAGKGVKQLTFDQISL----------------ELAGPYAAEDADVTFRLHQALQEKLAA 511

Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                  L+D E  L  +   I  +G  +D +L+      + ++   L+ +   +     
Sbjct: 512 TPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVALEREAFAIAGEEF 571

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILK 291
            +      L + L+   G+ ++  +    ++  + + + +LA+ D  L ++     ++ K
Sbjct: 572 -NLGSPKQLGVILYEKLGLPVLSKTAKG-QASTAEAVLAELAEQDYPLPKVLMQYRSLSK 629

Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L +     L E ++S  GR+    Q    + TGR S      QN+P +            
Sbjct: 630 LKSTYTDRLPEQINSRTGRVHTNYQ-QAVAATGRLSSIDPNLQNIPIRT----------- 677

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G KL+ AD + IE R++A +A ++  + AF + 
Sbjct: 678 -------------SEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHN 724

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ++ V+ +QR   K +   L Y       AK            + +
Sbjct: 725 LDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYIDR 784

Query: 462 FSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIG 500
           +         + +  +A+                     + +  ++      A+   + G
Sbjct: 785 YFARYPGVLAYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPALRKGAERTAINAPMQG 844

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARR 542
           TA +++KKA  A            + +LQ+  +L       + +      R+
Sbjct: 845 TAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRDEIRQ 896



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+ + M    +          ++L VHDE+V E  +     V   +   M+  
Sbjct: 843 QGTAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRDEIRQHMSAA 901


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/598 (17%), Positives = 195/598 (32%), Gaps = 109/598 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSD---- 56
            +D ET S  PL       +A+   I+ CA+    +   ++     R     +       
Sbjct: 322 ALDTETTSLDPL-------HADLVGIS-CAWQAGGDYQAVYVPVGHRDAGPQLDRQTVLT 373

Query: 57  -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L  +L D     +A N+ ++  +F +         R          +   +      LA
Sbjct: 374 ALRPWLEDPQAAKLAQNAKYDWRVFWRHGIHPAGLARDTLLESYVLNSS-HNGHDLDTLA 432

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + +H          I    +  +         A+   A  L   Y   D +    +  
Sbjct: 433 ERYLQHQN--------IRY--EEVVGKGKSARNFADVPVAEAL--PYAAEDADVCLRVDA 480

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P           L + E  L L+   + + G +ID   +  L   ++++    ++  
Sbjct: 481 LLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDMADCEQKA 540

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L      +      ++  LF    + ++  + G   S  +   + QLA    L RL  
Sbjct: 541 FVLAGQSF-NLNSPKQIQEILFDKMRLPVLKKTPGGQPST-NEDVLAQLAVHADLPRLIL 598

Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++ D GR+    Q    + TGR S      QN+P +     
Sbjct: 599 DYRGMAKLKNTYADALPQMINPDTGRVHTHFQ-QAVAATGRLSSNDPNLQNIPVRT---- 653

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  G  L+ AD + IE R+LA ++G+   
Sbjct: 654 --------------------EQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARL 693

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           ++AFA GEDI+  T A+ F+   + V    R   K +   L Y     G A+      + 
Sbjct: 694 LQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTPYGLAQQLGIDQAA 753

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493
               + ++ +       +    +A +                      +   +      A
Sbjct: 754 ARQYMDRYFERYLGVLEYMAQTRALAKKQGYVETLFGRRLYVPEIRSSNPARRTYAERAA 813

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
           +   + GTA +L+K A  A            + +LQ+  +L         E    + +
Sbjct: 814 INAPMQGTAADLIKMAMIAVDAWLQERPERGRMILQVHDELILEVPEAGLEAAKSALK 871



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYF 642
           RTY  +   N  +Q  + D++   M             G  ++L VHDE++ E P+    
Sbjct: 806 RTYAERAAINAPMQGTAADLIKMAMIAVDAWLQERPERG-RMILQVHDELILEVPEAGLE 864

Query: 643 SVG-TLCSLM 651
           +    L + M
Sbjct: 865 AAKSALKARM 874


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/600 (16%), Positives = 185/600 (30%), Gaps = 112/600 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD--- 56
            +D ET S   +           A I   +++           T         +P D   
Sbjct: 368 AVDTETTSLDEMR----------AQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEVL 417

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L +     +  N  ++R +F    GI++       T + +    +      A L
Sbjct: 418 ARLKPWLENPARPKLGQNIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLASL 475

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A            G++ I       +        + N V       EY   D + T ++ 
Sbjct: 476 AER--------HVGRSGINY---EDLCGKGVHQIKFNQVDI-ARAAEYSCEDSDQTLDVH 523

Query: 175 KRLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + L P       L  + Q           I   G  ID  ++ +    + Q   +L+ + 
Sbjct: 524 RVLWPQLQANEKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLLQLETEA 583

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++      +      L    F   G+ +V  +            + +LA+D  L     
Sbjct: 584 YEMAGQPF-NLGSPKQLAEIFFDKLGMKVVKKTPSG-ARSTDEDVLEKLAEDHPLPAKLL 641

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L++  +   GR+         + TGR S      QN+P       
Sbjct: 642 EHRSLSKLKGTYTDKLAQLANPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIP------- 693

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   +A  G  +  AD + IE R++A I+G++  
Sbjct: 694 -----------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESL 736

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF  G D++  T A+ F   +++VS EQR   KV+   L Y       AK        
Sbjct: 737 LHAFTAGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 796

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++ Q       + D  +  +      +                          A
Sbjct: 797 AAAYIDRYFQRYPGVKHYMDSTRQLAKEQGYVETVFGRRLLLPEINSPNGPRRAGAERAA 856

Query: 494 VKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + GTA +L+K +     Q           ++Q+  +L         E       R+
Sbjct: 857 INAPMQGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVPEAEVEWVRTEIPRL 916



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
           Q  + D++   M          K G  +++ VHDE+V E P+     V   +  LM 
Sbjct: 862 QGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVPEAEVEWVRTEIPRLMA 918


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/573 (18%), Positives = 195/573 (34%), Gaps = 112/573 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRD 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            +   +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QILVQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +                Y   
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499

Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214
           D   T  L++    +L P  + E  L+ ++         + + G R+D   + KL    A
Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFA 559

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +  + L+   +++ D     +     +   LF   GI     +  T +   S S + ++ 
Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617

Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L    L   G A LK    + L E   +D     T      + TGR S      QN+P
Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G+ L+ AD + IE R++A 
Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
            + +D  + AF +G+D++  T A+     I+ V+ +QR   K +   L Y        + 
Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                      ++Q+ Q       +                           ++ ++ ++
Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                 A+   L G+A +++K A     + + +
Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKILPK 866


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 202/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+ +   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEREAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------TEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+  +L          +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/541 (17%), Positives = 180/541 (33%), Gaps = 101/541 (18%)

Query: 53  MPSDLLQYL---------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           +P  L + L          D  +  +A N+ ++ ++ ++     +      C ++LA   
Sbjct: 357 VPEQLDRALVIDKLRPLMADTQLAKIAQNAKYDLLVLRRA---GLEVAGLSCDTMLASYL 413

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             P++ K+  L    SE L     G   +    K  I     +  +A           Y 
Sbjct: 414 ANPAA-KSHGLDTLASELLGYRTIGYTEVTGKGKKQIGFEEVEIEKAT---------VYA 463

Query: 164 KRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             D + T  L  +L P              E  L  +   +  +G RID D +  L   +
Sbjct: 464 TEDADITLRLADKLEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADM 523

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
                 L+ +I +L+     +      L   LF    +     ++           +T L
Sbjct: 524 KTRLATLEGEIHELSGRSF-NVASPKQLGEVLFEHLKLPRGKKTKTG--WSTDVEVLTNL 580

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
           A++  +        ++ KL     + L + +  D GR+  +      + TGR S      
Sbjct: 581 AEEHPIAARVLDYRSVAKLKSTYCDALPKLIHPDTGRIHTSFN-QAVTATGRLSSSDPNL 639

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   + + G  L+ AD + +E R
Sbjct: 640 QNIPIRT------------------------EEGRRIREAFVPAEGNLLLAADYSQVELR 675

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444
           +LA +A E    ++FA+GEDI+  T ++ F   ++ V+ E R   K +   + Y      
Sbjct: 676 ILAHMADEPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTINFGVLYGMSAFG 735

Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
            AK            +  +         F + ++AE+                       
Sbjct: 736 LAKSLGIARKEAQTYIDNYFARYPKVLEFMEAKKAEAREKQYVTTLLGRRCAVPEIASKN 795

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVV 532
             ++      A+   + G+A +++K A    H+           VLQ+  +L        
Sbjct: 796 GAVRGYAERNAINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHDELVFDMPAAE 855

Query: 533 Q 533
           Q
Sbjct: 856 Q 856



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS 643
           R Y  +   N  +Q  + DI+   M          K    +VL VHDE+V + P     +
Sbjct: 799 RGYAERNAINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHDELVFDMPAAEQAA 858

Query: 644 VGTLC-SLM 651
           V  L    M
Sbjct: 859 VENLVREQM 867


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 304 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 359

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 360 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 417

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 418 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 461

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 462 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 521

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 522 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 579

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 580 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 631

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 632 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 674

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 675 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 734

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 735 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 794

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 795 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 854

Query: 543 VANVP 547
           VA + 
Sbjct: 855 VAKLK 859



 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 768 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 818

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 819 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 853


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/574 (17%), Positives = 180/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  QA      + +   P +L DRT+     + L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQ---ALAQLAPLLT 415

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++                    +G      ++          
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+          +         D + T  L + L P   
Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLA 522

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + +    +++      +   +L    
Sbjct: 523 SEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRS 582

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S    + +  +A    L R+      + K
Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAK 640

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E V    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 641 LRSTYTDKLPEMVHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AF +G
Sbjct: 691 ---------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 735

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 736 ADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 856 TAADIIKRAMVNVDGWIANHAQRAKMILQVHDEL 889



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M N             ++L VHDE+V E       + +  + + M 
Sbjct: 861 IKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMA 910


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/583 (16%), Positives = 189/583 (32%), Gaps = 116/583 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54
            ID ET S   L           A I   +++ +                 + +P     
Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L  +L D     +  +  ++R +F    GI++       T + +    +      A L
Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G+  I+    C       P+     +   A+         D + T +
Sbjct: 456 AER--------HTGRTGISYEDLCGKGAKQIPFSQVPVDKAAAYS------CEDSDQTLD 501

Query: 173 LFKRLIPLSDGERDL---WLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           + + L P  + +  L   + L+         I   G  ID D +      + Q   +L++
Sbjct: 502 VHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQ 561

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +   +      +      L    F   G+ +V  +  T         + +LA+D  L   
Sbjct: 562 EAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 619

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL     + L++      GR+         + TGR S      QN+P +   
Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-- 676

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +   D + IE R++A I+G++
Sbjct: 677 ----------------------PEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             ++AF  G D++  T A+ F   + +V+ EQR   KV+   L Y       AK      
Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDN 774

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
           +     + ++ Q       +    +A++                      +   +     
Sbjct: 775 TAAKNYIDRYFQRYPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAER 834

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
            A+   + GTA +L+KKA                 ++Q+  +L
Sbjct: 835 AAINAPMQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDEL 877


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/574 (16%), Positives = 180/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  QA      + +   P +L DRT+     + L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQ---ALAQLAPLLT 415

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++                    +G      ++          
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+          +         D + T  L + L P   
Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLA 522

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + +    +++      +   +L    
Sbjct: 523 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRS 582

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S    + +  +A    L R+      + K
Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAK 640

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E +    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AF +G
Sbjct: 691 ---------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 735

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 736 ADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 856 TAADIIKRAMVNVDGWIANHAQRAKMILQVHDEL 889



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M N             ++L VHDE+V E       + +  + + M 
Sbjct: 861 IKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMA 910


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/601 (17%), Positives = 188/601 (31%), Gaps = 105/601 (17%)

Query: 1   MSKLFIDIETRSPQPL---PKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M  +  D ET S   L     VGV    E   A     A+ +   P +L    ++  + +
Sbjct: 362 MDWVAFDTETDS-LDLFAGRIVGVSFSIEDNRAAYVPLAHNYPGAPAQL----DRDTVLA 416

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           DL  +L D +   V  N+ F+  +     GI +    +  T + +        L +    
Sbjct: 417 DLKPWLEDASRTKVMQNAKFDSHMLANH-GITLRGVLF-DTMLESYV------LDSTATR 468

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ----AWQLFGEYCKRDVEATR 171
            +      K            + +I         A  +       +  G Y   D + T 
Sbjct: 469 HDMDSLAAK---------YLGRSTITFEDIAGKGAKALSFPEIHLEQAGPYAAEDADVTG 519

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P               E+ L  +   +   G R+D   +    + I +    +
Sbjct: 520 QLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIGERIAAV 579

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   K       +   T  L+  LF    + +   +     S      + +L     L 
Sbjct: 580 EQAAFKEAGREF-NLGSTKQLKELLFDELKLPVGKKTPKGEPST-DEEALGELVGSHPLP 637

Query: 281 RLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L      + KL +     L E + +  GR+         + TGR S      QN+P + 
Sbjct: 638 ALILDYRGLSKLKSTYIDRLPEDIHTHTGRVHSAF-HQAVTATGRLSSSNPNLQNIPIRS 696

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G KL+ AD + IE R++A ++ 
Sbjct: 697 ------------------------EEGRRIRQAFVADPGCKLISADYSQIELRIMAHLSE 732

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           ++    AFA GEDI+  T A+ F     +VS  QR   K +   L Y       AK    
Sbjct: 733 DERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIYGMSAFGLAKQLDV 792

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489
                   +  +       + + +                       +  S +   +   
Sbjct: 793 PRGEAQAYIDLYFARYPGVAKYMERMRQQARQMGYVETVFGRRLYLPEIHSRNGQRRQYA 852

Query: 490 PEFAVKDKLIGTACELVKKAWRAKH-----QGVLQLWKDLTEGFACVVQEGGSISARRVA 544
              A+   + GTA +++K A  A H      G  ++   + +     V E        + 
Sbjct: 853 ERTAINAPMQGTAADIIKIAMIALHKLLVVPGRARMILQVHDELIFEVPESDVAEIEPII 912

Query: 545 N 545
            
Sbjct: 913 R 913


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 106/594 (17%), Positives = 201/594 (33%), Gaps = 95/594 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 374 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 430 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 485

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 486 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 543

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++   +    
Sbjct: 544 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAVAGQP 597

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 598 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 656

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 657 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 705

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 706 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 751

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 752 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 811

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 812 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 871

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A             K + ++Q+  +L         +       ++
Sbjct: 872 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQI 925


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 184/558 (32%), Gaps = 91/558 (16%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L +  +  +  N  ++  +F    GI++    +  T + + T           LA
Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAF-DTMLESYTLNSTGRHNMDDLA 484

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCKR 165
             +  H T   E   GK      F +  I +           T   H   W    +  + 
Sbjct: 485 ERYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLW---SQLAQE 541

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                     +L    + E  L  +   I   G  ID   + +    I +   +L++++ 
Sbjct: 542 PALV------KLFD--EIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVH 593

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284
                +   +  T  L+  LF   G+ ++  +     S  +   + +LA     + +L  
Sbjct: 594 SEAGSVFNLA-STKQLQEILFEKLGLPILKKTPKGAAST-NEEVLEELAMMGHRVPKLLI 651

Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+  +      + TGR S      QN+P +     
Sbjct: 652 EHRGLSKLKSTYTDKLPLMINAKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR----- 705

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G K+V AD + IE R++A +A +   
Sbjct: 706 -------------------NEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDKGM 746

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +KAFA G+DI+ +T ++ F  P+D+V+ EQR   K +   L Y       +       + 
Sbjct: 747 LKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEFGLSNQLGISRAD 806

Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493
               ++ +     +   F                         + +S +   +      A
Sbjct: 807 AKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEIKSSNAMRRKAAERVA 866

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++K A     + +           +  ++    +    V  V    +  
Sbjct: 867 INAPMQGTAADIIKIAMIGIDRVI---------QHSDEIKMIMQVHDELVFEVKEDKVEH 917

Query: 554 HKRDVHIVLPSSRRLVYS 571
           +   +   +  + +L   
Sbjct: 918 YSAVIKAEMEKAIQLNVP 935


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/583 (16%), Positives = 189/583 (32%), Gaps = 116/583 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54
            ID ET S   L           A I   +++ +                 + +P     
Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L  +L D     +  +  ++R +F    GI++       T + +    +      A L
Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G+  I+    C       P+     +   A+         D + T +
Sbjct: 456 AER--------HTGRTGISYEDLCGKGAKQIPFSQVPVDKAAAYS------CEDSDQTLD 501

Query: 173 LFKRLIPLSDGERDL---WLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           + + L P  + +  L   + L+         I   G  ID D +      + Q   +L++
Sbjct: 502 VHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQ 561

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +   +      +      L    F   G+ +V  +  T         + +LA+D  L   
Sbjct: 562 EAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 619

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                ++ KL     + L++      GR+         + TGR S      QN+P +   
Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-- 676

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +   D + IE R++A I+G++
Sbjct: 677 ----------------------PEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             ++AF  G D++  T A+ F   + +V+ EQR   KV+   L Y       AK      
Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDN 774

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
           +     + ++ Q       +    +A++                      +   +     
Sbjct: 775 TAAKNYIDRYFQRYPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAER 834

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
            A+   + GTA +L+KKA                 ++Q+  +L
Sbjct: 835 AAINAPMQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDEL 877


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 398 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGHLK 453

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            YL +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 454 PYLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 509

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 510 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 567

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL++      D  
Sbjct: 568 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQP 621

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 622 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 680

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 681 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 729

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 730 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 775

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 776 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 835

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 836 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 895

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 896 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 948


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/609 (17%), Positives = 206/609 (33%), Gaps = 110/609 (18%)

Query: 1   MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49
           M KL        D ET   +      VGV ++A            + +   P +L    +
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLWHDYTGAPAQL----D 371

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107
           +  +  +L   L D     +  N  ++  +  K  G+ I +K +   ++LA    N   +
Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 LAL +         G+ ++       +          NHV        Y   D 
Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL +            E  L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L++   KL       S     L+  L+    + +   + G   S  + + +  LA D
Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L ++     ++ KL T     L   V    R   T      + TGR S      QN+P
Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G ++V AD + +E R++A 
Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444
           ++ +   IKAF    DI+  T A+ F   +++V+ EQR   K +   L Y          
Sbjct: 691 VSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750

Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493
             + + +A             + ++ Q ++  +  + + E      +++ D +       
Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810

Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536
                  +   + GTA +++K A      W  K+      ++Q+  +L    A    E  
Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870

Query: 537 SISARRVAN 545
               ++   
Sbjct: 871 IPQIKKAME 879


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/574 (17%), Positives = 182/574 (31%), Gaps = 100/574 (17%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  QA      + +   PV+L DRT+     + L   L 
Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGVPVQL-DRTQ---ALAQLAPLLT 416

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++                    +G      ++          
Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
            K E+        C       P+          +         D + T  L + L P   
Sbjct: 477 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLA 523

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   I   G  +D   + + +  +++      +   +L    
Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRMLAAQQKATELAGRT 583

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L+  LF    +  V  +     S    + +  +A    L R+      + K
Sbjct: 584 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 641

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E +    GR+  +    GA+ TGR S      QN+P +            
Sbjct: 642 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 691

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G+KL+  D + IE R++A ++G+   + AF +G
Sbjct: 692 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 736

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T A+ F   ID VS ++R   K +   L Y       A+            +  
Sbjct: 737 ADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 796

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           +         F +  + ++      +                          A+   + G
Sbjct: 797 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 856

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K+A               + +LQ+  +L
Sbjct: 857 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 890



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 742 ATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 801

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 802 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 861

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
           +   M               ++L VHDE+V E       + +  + + M 
Sbjct: 862 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMA 911


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/596 (17%), Positives = 185/596 (31%), Gaps = 98/596 (16%)

Query: 5   FIDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLLQ 59
            ID ET S  P+    VG+    E         A     V   +      +  +   +  
Sbjct: 355 AIDTETTSLDPMLAQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQLSREYVLERMRG 414

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           +L D     +  +  ++  +F    G+ +       T + +       +     LA    
Sbjct: 415 WLEDPARPKLGQHLKYDSHVFANH-GVALRGIA-HDTMLESYVLASYRNHGMDSLAERLL 472

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              T   E        C    +   +D              EY   D + T  L +++ P
Sbjct: 473 SLKTITYE------EVCGKGANQIGFDQID------LPRATEYAAEDADVTLRLHRKMQP 520

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                          E  + ++ Q I   G  ID D +      +      L+       
Sbjct: 521 QLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAELGLRMMDLERAAHDAA 580

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      +   LF    + +V  +     S      + +LA D  L +L      
Sbjct: 581 GQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPST-DEEVLQKLADDYPLPKLLLDYRG 638

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L + V+   GR+  +     A  TGR +      QN+P +         
Sbjct: 639 LSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAV-TGRLASTDPNLQNIPVRT-------- 689

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA+ G  +V AD + IE R++A I+G++  ++AF
Sbjct: 690 ----------------EEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAF 733

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           ANGEDI+  T  + F    + VS EQR   KV+   L Y       A             
Sbjct: 734 ANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHY 793

Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497
           + ++       + + +            E      LW+          +      A+   
Sbjct: 794 IDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAP 853

Query: 498 LIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           + GTA +L+K +           R   + ++Q+  +L         E   +    +
Sbjct: 854 MQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPEL 909


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/555 (16%), Positives = 190/555 (34%), Gaps = 107/555 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+++   P +L    ++ A+ + L   L D     V  ++ ++  +     GI+
Sbjct: 359 AAYIPLAHSYMGVPDQL----DRDAVLAALRPILEDPARAKVGQHAKYDMNVLAHY-GIE 413

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDS 142
           +    +  T + +      +       LAL +    T   +   GK      F + ++  
Sbjct: 414 VRGVAY-DTMLESYVLDSTATRHDMDSLALKYLGQGTIRFEDIAGKGAKQLTFDQIAL-- 470

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLLD 191
                         +  G Y   D + T  L + L             L + E  L  + 
Sbjct: 471 --------------EQAGPYAAEDADVTLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVL 516

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  +D  L+ +    + ++ ++L+ +  +L       +     L   L+   G+
Sbjct: 517 ARIERHGALVDAKLLGEQSLELGEKLQQLEREAHELAGEPFNLA-SPKQLGAILYDKLGL 575

Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
            ++  +     S  + S +  LA+    L ++     ++ KL     + L + ++   GR
Sbjct: 576 PVLSKTAKGQPST-AESVLADLAEQGYPLPQVIMRHRSLNKLKGTYTDKLPQQINPRTGR 634

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 635 IHTSY-HQAVTATGRLSSSDPNLQNIPIRT------------------------TEGRRI 669

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G +LV AD + IE R++A +A +   + AF N  D++  T A+ F    + V
Sbjct: 670 RQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRATAAEVFGVAPEAV 729

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           S +QR   K +   L Y       A+            + ++         + +  +A++
Sbjct: 730 SADQRRSAKAINFGLIYGMSAFGLARQIGVERKEAQAYIDRYFARYPGVLAYMERTRAQA 789

Query: 481 ---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                                 +  ++      A+   + G+A +++K+A          
Sbjct: 790 AEQGYVETLFGRRLYLPEIHSKNGALRKAAERTAINAPMQGSAADIIKRAMVTVDAWLLE 849

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 850 SGLDARMILQVHDEL 864



 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 15/88 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619
            RRL   ++               R            +Q  + DI+   M          
Sbjct: 800 GRRLYLPEIHSKN---GALRKAAERTAINAP------MQGSAADIIKRAMVTVDAWLLES 850

Query: 620 -NGYDIVLTVHDEIVSETPDTPYFSVGT 646
                ++L VHDE+V E  +    ++  
Sbjct: 851 GLDARMILQVHDELVLEVREDQVEALKA 878


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLG 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/509 (18%), Positives = 179/509 (35%), Gaps = 89/509 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L D  V+ VA N  ++ +L ++     I ++ +  T +++        +     L+
Sbjct: 471 LKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 527

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        K ++     D  RA H         Y   D + T  
Sbjct: 528 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 572

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L++
Sbjct: 573 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 632

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I  L      +      L   LF   G+     ++ T +   S   +  LA     L R
Sbjct: 633 EIYVLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 690

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                  + KL     + L   V ++ +   T     ++ TGR S      QN+P +   
Sbjct: 691 KIVDWRQLTKLKSTYTDALPGYVHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 748

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 749 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 786

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A       
Sbjct: 787 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 846

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S  G  ++++ +       + +                     + +  S +  ++     
Sbjct: 847 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 906

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520
            A+   + G+A +++++A       + ++
Sbjct: 907 AAINAPIQGSAADVIRRAMIRMEPALAEV 935


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 115/605 (19%), Positives = 206/605 (34%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D +   +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 410 DASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVR 467

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                +   EY   D + T +L   L 
Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPL----------------EQASEYAAEDADITLQLHHALY 511

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA    +L++    L
Sbjct: 512 PQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGL 571

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+   GR+         + TGR +      QN+P +        
Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 725 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +A +             LW+          +      A+  
Sbjct: 785 YIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPESELSIVREKLPEMMCG 904

Query: 543 VANVP 547
           VA + 
Sbjct: 905 VAKLK 909


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 109/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L + T+  +  N  +++ +F      DI        ++LA         +GL   L  
Sbjct: 409 PHLENPTLKKIGQNLKYDQHVFANY---DIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL++         
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/594 (18%), Positives = 202/594 (34%), Gaps = 95/594 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        S+LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDSMLASYIIESHLGHGLD-ELSG 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D     
Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A             K + ++Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQI 904


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/589 (17%), Positives = 183/589 (31%), Gaps = 108/589 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-------EQSAMPSDL 57
            ID+ET S  P            A I   ++++ D                +   +P DL
Sbjct: 316 AIDLETTSLDP----------RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDL 365

Query: 58  -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
                   L   +   +  N  F+  +        +        ++LA     PS   + 
Sbjct: 366 VLERLRPQLESPSPTKIGQNIKFDMQVLAT---NGVSLSGIRFDTMLASYVLNPSRQGHG 422

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             AL   EHL       A +    K   +    +   A           Y   D +AT  
Sbjct: 423 LDALAL-EHLGHRMISYAEVTGSGKTQKNFSQVEIETA---------SRYACEDADATWL 472

Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L ++  PL             E  L  +   + + G  +D+ L+  L    +     L+ 
Sbjct: 473 LHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEG 532

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            I +L      +      L   LF    +     ++G       +  ++ LA++  + RL
Sbjct: 533 RIFQLAGTTF-NLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEIARL 591

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L   V    GR+  +      + TGR S      QN+P +   
Sbjct: 592 ILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYN-QTVTSTGRLSSSDPNLQNIPIRS-- 648

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G  ++ AD + IE RVLA ++G+ 
Sbjct: 649 ----------------------DEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDP 686

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
              +AF + EDI+  T ++ F    + V+ E R   K +   + Y  G    A+      
Sbjct: 687 VFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQGSFSLARQLGIAR 746

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPE 491
                 +  + +       F D    ++                         ++     
Sbjct: 747 KTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNIRAFAQR 806

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            A+   + G+A +++K A       +       +L   + +     V+E
Sbjct: 807 NAINYPIQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVRE 855


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 109/594 (18%), Positives = 202/594 (34%), Gaps = 94/594 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           + + ID ET S       L  + +   A +AV     ++    P +L D      +   L
Sbjct: 397 NTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRL 452

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             +L +  +  +  N  +++ +F       I        ++LA         +GL   L 
Sbjct: 453 KPHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 508

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I         +  Y    A+     +      + D E  
Sbjct: 509 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 566

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+++++      E  +  +   +   G +ID   + +    +  E  KL++      D 
Sbjct: 567 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQ 620

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++
Sbjct: 621 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 679

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +S  DGR+  T      + TGR +      QN+P +          
Sbjct: 680 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 729

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   I AF 
Sbjct: 730 ---------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 774

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F T  + VS EQR   K +   L Y  G    AK            +
Sbjct: 775 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 834

Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498
            ++       + +    + ++                      +   +      A+   +
Sbjct: 835 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 894

Query: 499 IGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 895 QGTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 948


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/594 (17%), Positives = 184/594 (30%), Gaps = 121/594 (20%)

Query: 7   DIETRSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S  PL             G  AY          + + D P +L    E   + + 
Sbjct: 370 DTETTSLDPLTAQIVGMSFSVAAGTGAY------LPLTHDYFDAPSQL-PLAE---VLAK 419

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113
               L + T+  V  N  +++ +     GI +       T + +                
Sbjct: 420 FKPLLENPTIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRGHGMDELSA 477

Query: 114 LALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             L       +   GK      F + +I+                            T +
Sbjct: 478 RHLGIEPISFEQVAGKGAKQVGFNQVTIEVAAEYAAEDAD----------------ITLQ 521

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L P            S  E        TI   G  ID +++ +    I  +  +L+
Sbjct: 522 LHEALSPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELE 581

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L      +      L+  LF   GI  +  +     S      + +LA D  L +
Sbjct: 582 AKAFELAGQPF-NLGSPKQLQEILFGKLGIKPIKKTPSGAPST-DEDVLQELALDYPLPK 639

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +      + KL     + L + +++  GR+         + TGR +      QN+P +  
Sbjct: 640 VLLEYRGLAKLKSTYTDKLPKMINAHTGRVHTNYN-QAVAITGRLASSDPNLQNIPVRT- 697

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  +V AD + IE R++A ++ +
Sbjct: 698 -----------------------AEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKD 734

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
              ++AFAN EDI+  T A+ F      V  EQR   KV+   L Y       A+     
Sbjct: 735 AGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSAFGLAQNLNIE 794

Query: 452 ASHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQY--------------------P 490
            S     ++++           +D  +      +++  +                     
Sbjct: 795 RSAAQNYIERYFARYPGVRQYMQDTRELAKEKGYVETYFGRRLWVPEINSANGMRRAGAE 854

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534
             A+   + GTA +L+K A  A            + ++Q+  +L    A    E
Sbjct: 855 RAAINAPMQGTAADLIKLAMIAVDKWLKDEQLNTKLIMQVHDELVLEVADSELE 908


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 115/605 (19%), Positives = 206/605 (34%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D +   +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 410 DASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVR 467

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                +   EY   D + T +L   L 
Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPL----------------EQASEYAAEDADITLQLHHALY 511

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA    +L++    L
Sbjct: 512 PQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGL 571

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+   GR+         + TGR +      QN+P +        
Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 725 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +A +             LW+          +      A+  
Sbjct: 785 YIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPESELSIVREKLPEMMCG 904

Query: 543 VANVP 547
           VA + 
Sbjct: 905 VAKLK 909


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/596 (17%), Positives = 199/596 (33%), Gaps = 95/596 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 380 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 435

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 436 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 491

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 492 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 549

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL++         
Sbjct: 550 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAGQP 603

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 604 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 662

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 663 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 711

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 712 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 757

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 758 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 817

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 818 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 877

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           GTA +L+K+A             + + ++Q+  +L         +       ++  
Sbjct: 878 GTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIME 933


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/570 (17%), Positives = 185/570 (32%), Gaps = 100/570 (17%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--KKTLGIDIPS 90
             ++ DD P   + + +     +++     D  V+ + HN  ++  +    +  GI++  
Sbjct: 423 LNFSDDDTPAH-YPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINLAP 481

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDC 147
                T  L+                    H      G  L     +F            
Sbjct: 482 VD--DTMCLSYVLDGG----------RVERHSMDYLAGHWLDYTTIKFSDVCGKGAKQIP 529

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDR 197
                 +A     +Y   D + T  L+  L P              ER L  +   + + 
Sbjct: 530 FSELAPEA---ALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQMENY 586

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D  ++ ++    A   + L +DI+ L       +     L   LF   G+     +
Sbjct: 587 GITVDRSILARMSNDFATRMEALAQDILALAGEDFNIA-SPKQLGEILFDKMGLQGGKKA 645

Query: 258 EGTLKSILSHSNITQLAK---DLILNRLASSGSAILK---LNTLSEAV-SSDGRLRGTLQ 310
           + T     S   +  LA    ++    L     A LK    + L E +  + GR+  +  
Sbjct: 646 K-TGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVECILPATGRVHTSFS 704

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             GAS TGR S      QN+P +                              +R+  IA
Sbjct: 705 MVGAS-TGRLSSSDPNVQNIPIRT------------------------SEGRQIRTAFIA 739

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           + G KL+  D + IE R++A +AGE   I+AF +G DI+  T ++ F  P+D++  E R 
Sbjct: 740 AEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRR 799

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             K +   + Y     G A+            +  + +N      + +  + E+      
Sbjct: 800 RAKAINFGIIYGISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTEAREDGFV 859

Query: 487 DQ---------------------YPEFAVKDKLIGTACELVKKAWRAKHQG--------- 516
           +                          A+   + G+A +++K+A                
Sbjct: 860 ETLFGRRIHITGMAGGSAAHRGFAERQAINAPIQGSAADIIKRAMIRIPPALQAADIRAD 919

Query: 517 -VLQLWKDLTEGFACVVQEGGSISARRVAN 545
            +LQ+  +L         +       R+  
Sbjct: 920 MLLQVHDELIFEAPAADADNAVKHITRIME 949



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
           +Q  + DI+   M              D++L VHDE++ E P     + V  +  +M
Sbjct: 892 IQGSAADIIKRAMIRIPPALQAADIRADMLLQVHDELIFEAPAADADNAVKHITRIM 948


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 199/611 (32%), Gaps = 125/611 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60
           D ET S  P+           A I   +++ +               MP+ L +      
Sbjct: 48  DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 97

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D     +  +  ++  +     GI +       T + +       +     LAL
Sbjct: 98  LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 155

Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                   K E+  GK      F +  +                    EY   D + T +
Sbjct: 156 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 199

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L   L P             D E  + L+ + +   G  ID D + +    IA     L+
Sbjct: 200 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 259

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++   L  G   +      +    F    + +V  +     S      + +LA+D  L +
Sbjct: 260 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 317

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L      + KL     + L   V+ D GR+         + TGR +      QN+P +  
Sbjct: 318 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 375

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 376 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 412

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A      
Sbjct: 413 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 472

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490
                L + ++       + + +  +  +             LW+          +    
Sbjct: 473 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 532

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGG 536
             A+   + GTA +L+K +  A            + ++Q+      ++ E    +V+E  
Sbjct: 533 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 592

Query: 537 SISARRVANVP 547
                 VA + 
Sbjct: 593 PEMMCGVAKLK 603



 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 512 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 562

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 563 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 597


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 95/545 (17%), Positives = 177/545 (32%), Gaps = 93/545 (17%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-- 108
           + + + L   L D  V+ V HN  ++  +     G+ +  + +  T +L+      S   
Sbjct: 398 ADILARLKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVLDGASHGH 454

Query: 109 -LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L   CL L+         E        C    +   +D    +          Y   D 
Sbjct: 455 GLDELCL-LHLGHRNISFAEV-------CGSGRNQVTFDRVPLD------KACAYAAEDA 500

Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T  L   L P              ER L  +   +   G ++D   ++ L E   +  
Sbjct: 501 DMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMALSEDFGRRL 560

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
            +L+ ++V L +G   +      L   LF    +     ++ T +       +  LA   
Sbjct: 561 TELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTK-TGQWATGADVLEDLAHLH 619

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L         + KL     + L   ++   GR+  +     A+ TGR S      QN+P
Sbjct: 620 PLPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYAL-AATTTGRLSSSDPNLQNIP 678

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   +A  GK+L+ AD + IE R++A 
Sbjct: 679 IRT------------------------EEGRKIRHAFVAEPGKRLISADYSQIELRLVAH 714

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           +A  +    AFA+G DI+  T ++ F  P+D +    R   K +   + Y     G A  
Sbjct: 715 VAEIEGLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISPFGLAAQ 774

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQ 486
                      ++ +        TF +  + E+                         M+
Sbjct: 775 LGIPQGEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVFTPGIKDKNGAMR 834

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISA 540
                 A+   + G A +++K+A       ++      +L   + +       E  + + 
Sbjct: 835 AFAERAAINGPIQGGAADIIKRAMIRLPAALVAEGLKARLLLQVHDELVLEAPEDETEAT 894

Query: 541 RRVAN 545
            RV  
Sbjct: 895 VRVVK 899


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/572 (17%), Positives = 185/572 (32%), Gaps = 100/572 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET S       +  + +     +A     A+ +   P +L    ++  +   +   
Sbjct: 341 AIDTETTSLKYMEAEIVGISLAVAPNEACYIPLAHDYAGAPEQL----DRDWVLQKMKPL 396

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNF 118
           L DET   V  N  ++  + K     DI        T + +      +S      LA ++
Sbjct: 397 LEDETPKKVGQNLKYDAHVLKNY---DIELNGIAHDTMLESYVLNSTASKHNMDDLAKHY 453

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             H     E   GK      F +  +                +  GEY   D + T  L 
Sbjct: 454 LGHECIDFESIAGKGAKQLTFNQIPV----------------EQAGEYAAEDADITLRLH 497

Query: 175 KRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P  +            E  L  +   +   G  ++ D + +    I Q  ++L+  
Sbjct: 498 QVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQELERK 557

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +   +  +   T  L+   F    + ++  +     S      + +L+ D  L ++ 
Sbjct: 558 AHDIAGEVF-NLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEE-VLVELSHDYELPKVI 615

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L   ++S  +   T      + TGR S      QN+P +     
Sbjct: 616 LEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRLSSSDPNLQNIPIR----- 670

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R    A  G  LV AD + IE R++A ++G+   
Sbjct: 671 -------------------NEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGL 711

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF NG+DI+  T A+        V  EQR   K +   L Y       A+      S 
Sbjct: 712 LDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAFGLARQLGIGRSE 771

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               + ++         + +                       +  S +   +      A
Sbjct: 772 AQEYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMRRQAAERTA 831

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +   + GTA +++K+A    HQ + +   D+ 
Sbjct: 832 INAPMQGTAADIIKRAMIKMHQWIQESAHDVH 863



 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKN----ATKNGYDI--VLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        ++ +D+  ++ VHDE++ E PD    +V   + S+M
Sbjct: 837 QGTAADIIKRAMIKMHQWIQESAHDVHMIMQVHDELIFEVPDGQLDAVSAEIKSIM 892


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 199/611 (32%), Gaps = 125/611 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60
           D ET S  P+           A I   +++ +               MP+ L +      
Sbjct: 50  DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 99

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D     +  +  ++  +     GI +       T + +       +     LAL
Sbjct: 100 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 157

Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                   K E+  GK      F +  +                    EY   D + T +
Sbjct: 158 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 201

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L   L P             D E  + L+ + +   G  ID D + +    IA     L+
Sbjct: 202 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 261

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++   L  G   +      +    F    + +V  +     S      + +LA+D  L +
Sbjct: 262 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 319

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L      + KL     + L   V+ D GR+         + TGR +      QN+P +  
Sbjct: 320 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 377

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 378 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 414

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A      
Sbjct: 415 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 474

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490
                L + ++       + + +  +  +             LW+          +    
Sbjct: 475 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 534

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGG 536
             A+   + GTA +L+K +  A            + ++Q+      ++ E    +V+E  
Sbjct: 535 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 594

Query: 537 SISARRVANVP 547
                 VA + 
Sbjct: 595 PEMMCGVAKLK 605



 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 514 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 564

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 565 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 599


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L     D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +    EHL         IA   K        D          ++  +Y   D + T  LF
Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478

Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                L +            E  L ++   +   G +ID   +++    +    K+L+  
Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L       S     LR  LF   G+  V  +    +   S   + QLA+D  +  L 
Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L + + ++GR+  +    G + TGR S      QN+P +     
Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA +G  +V AD + IE R++A ++ +   
Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +K F    DI+  T A+     ID+VS EQR   K +   L Y       A+  +   + 
Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +     S   +                         +  S ++  ++     A
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++KKA    +  + Q        +   ++    +    V  V +  +  
Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864

Query: 554 HKRDVHIVLPSSRRLVYS 571
               +  ++ ++ +L   
Sbjct: 865 IVAKIKSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L     D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +    EHL         IA   K        D          ++  +Y   D + T  LF
Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478

Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                L +            E  L ++   +   G +ID   +++    +    K+L+  
Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L       S     LR  LF   G+  V  +    +   S   + QLA+D  +  L 
Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L + + ++GR+  +    G + TGR S      QN+P +     
Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA +G  +V AD + IE R++A ++ +   
Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +K F    DI+  T A+     ID+VS EQR   K +   L Y       A+  +   + 
Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +     S   +                         +  S ++  ++     A
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++KKA    +  + Q        +   ++    +    V  V +  +  
Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864

Query: 554 HKRDVHIVLPSSRRLVYS 571
               +  ++ ++ +L   
Sbjct: 865 IVAKIKSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/556 (16%), Positives = 181/556 (32%), Gaps = 91/556 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L   L +  +  +  N  ++  +F    GI++    +  T + + T           L
Sbjct: 428 SKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAF-DTMIESYTQNSTGRHNMDDL 485

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCK 164
           A  +  H T   E   GK      F K  I             T   H   W+   +   
Sbjct: 486 AARYLGHKTIPFEELAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQ--- 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                  EL K      + E  L  +   I   G  ID   +L     I +  ++++  +
Sbjct: 543 -----EPELVKLF---DEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLV 594

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283
                     +  T  L+  LF   G+ ++  +     S  +   + +LA+   ++ +L 
Sbjct: 595 HAEAGQTFNLA-STKQLQEILFEKLGLPVLKKTPKGAPST-NEEVLDELAQQGHLVPKLL 652

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L + ++   GR+  +      + TGR S      QN+P +    
Sbjct: 653 MEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYN-QAVTATGRLSSSDPNLQNIPIR---- 707

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  G K+V AD + IE R++A ++ ++ 
Sbjct: 708 --------------------NEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEG 747

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            I AFA G+DI+  T A+ F   + +V+ EQR   K +   L Y       +       +
Sbjct: 748 MINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSNQLGIGRA 807

Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492
                +  + Q   +   F                           +S +  ++      
Sbjct: 808 EAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAILRKAAERV 867

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A+   + GTA +++K A       +              ++    +    V  V    + 
Sbjct: 868 AINAPMQGTAADIIKVAMIGIDNAIRD---------NDEIKMIMQVHDELVFEVKADKID 918

Query: 553 RHKRDVHIVLPSSRRL 568
            + + +   +  +  L
Sbjct: 919 HYSQLIKTEMEKAISL 934


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/556 (16%), Positives = 181/556 (32%), Gaps = 91/556 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L   L +  +  +  N  ++  +F    GI++    +  T + + T           L
Sbjct: 428 SKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAF-DTMIESYTQNSTGRHNMDDL 485

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCK 164
           A  +  H T   E   GK      F K  I             T   H   W+   +   
Sbjct: 486 AARYLGHKTIPFEELAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQ--- 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                  EL K      + E  L  +   I   G  ID   +L     I +  ++++  +
Sbjct: 543 -----EPELVKLF---DEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLV 594

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283
                     +  T  L+  LF   G+ ++  +     S  +   + +LA+   ++ +L 
Sbjct: 595 HAEAGQTFNLA-STKQLQEILFEKLGLPVLKKTPKGAPST-NEEVLDELAQQGHLVPKLL 652

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L + ++   GR+  +      + TGR S      QN+P +    
Sbjct: 653 MEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYN-QAVTATGRLSSSDPNLQNIPIR---- 707

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  G K+V AD + IE R++A ++ ++ 
Sbjct: 708 --------------------NEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEG 747

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            I AFA G+DI+  T A+ F   + +V+ EQR   K +   L Y       +       +
Sbjct: 748 MINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSNQLGIGRA 807

Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492
                +  + Q   +   F                           +S +  ++      
Sbjct: 808 EAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAILRKAAERV 867

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A+   + GTA +++K A       +              ++    +    V  V    + 
Sbjct: 868 AINAPMQGTAADIIKVAMIGIDNAIRD---------NDEIKMIMQVHDELVFEVKADKID 918

Query: 553 RHKRDVHIVLPSSRRL 568
            + + +   +  +  L
Sbjct: 919 HYSQLIKTEMEKAISL 934


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 91/558 (16%), Positives = 183/558 (32%), Gaps = 91/558 (16%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L +  +  +  N  ++  +F    GI++    +  T + + T           L+
Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAF-DTMLESYTLNSTGRHNMDDLS 484

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCKR 165
             +  H T   E   GK      F +  I +           T   H   W         
Sbjct: 485 DRYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQL------ 538

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                     +L    + E  L  +   I   G  ID   + +    I +   +L++++ 
Sbjct: 539 ---VQEPTLVKLFD--EIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVH 593

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284
                +   +  T  L+  LF   G+ ++  +     S  +   + +LA     + +L  
Sbjct: 594 SEAGSVFNLA-STKQLQEILFEKLGLPILKKTPKGAAST-NEEVLEELAMMGHRVPKLLI 651

Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+  +      + TGR S      QN+P +     
Sbjct: 652 EHRGLSKLKSTYTDKLPLMINAKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR----- 705

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G K+V AD + IE R++A +A ++  
Sbjct: 706 -------------------NEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDEGM 746

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +KAFA G+DI+ +T ++ F  P+D+V+ EQR   K +   L Y       +       + 
Sbjct: 747 LKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEFGLSNQLGISRAD 806

Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493
               ++ +     +   F                         + +S +   +      A
Sbjct: 807 AKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEIKSSNAMRRKAAERVA 866

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++K A     + +           +  ++    +    V  V    +  
Sbjct: 867 INAPMQGTAADIIKIAMIGIDRII---------QHSDEIKMIMQVHDELVFEVREDKVEH 917

Query: 554 HKRDVHIVLPSSRRLVYS 571
           +   +   +  + +L   
Sbjct: 918 YSALIKAEMEKAIQLSVP 935


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 93/574 (16%), Positives = 190/574 (33%), Gaps = 117/574 (20%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD-----LLQYLRDETVMCVAHNSL 74
           A+QA +   ++A           T         +  D     L   L D T + V  ++ 
Sbjct: 355 AQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRDTVLLALKPLLEDPTKLKVGQHAK 414

Query: 75  FERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---K 124
           F+  +         P+           T + +      +       LA  + ++ T   +
Sbjct: 415 FDMNILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVAFQ 474

Query: 125 MEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179
              GK      F + ++                +  G Y   D + T  L + L      
Sbjct: 475 DIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRLHQALFAQLSA 518

Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                  L+D E  L  +   I  +G  +D DL+      +  +  +L+    ++     
Sbjct: 519 IPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEF 578

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291
            +      L   L+   G+ ++  + G  ++  +   + +LA+D   L ++     ++ K
Sbjct: 579 -NLGSPKQLGAILYEKLGLPVLKKT-GKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSK 636

Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L +     L E ++   GR+  +      + TGR S      QN+P +            
Sbjct: 637 LKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPVRT----------- 684

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA  G K++ AD + IE R++A ++ ++  + AF + 
Sbjct: 685 -------------AEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHLSKDEGLMNAFRHN 731

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461
            D++  T A+ F   +  V+ +QR   K +   L Y  GA+                +  
Sbjct: 732 LDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDV 791

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIG 500
           +         + +  +A++      + +                        A+   + G
Sbjct: 792 YFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAERTAINAPMQG 851

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++KKA               + +LQ+  +L
Sbjct: 852 TAADIIKKAMVLVDNWLTDSGLDAKVILQVHDEL 885


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L     D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +    EHL         IA   K        D          ++  +Y   D + T  LF
Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478

Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                L +            E  L ++   +   G +ID   +++    +    K+L+  
Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L       S     LR  LF   G+  V  +    +   S   + QLA+D  +  L 
Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L + + ++GR+  +    G + TGR S      QN+P +     
Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA +G  +V AD + IE R++A ++ +   
Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +K F    DI+  T A+     ID+VS EQR   K +   L Y       A+  +   + 
Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +     S   +                         +  S ++  ++     A
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++KKA    +  + Q        +   ++    +    V  V +  +  
Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864

Query: 554 HKRDVHIVLPSSRRLVYS 571
               +  ++ ++ +L   
Sbjct: 865 IVAKIKSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/556 (16%), Positives = 181/556 (32%), Gaps = 91/556 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L   L +  +  +  N  ++  +F    GI++    +  T + + T           L
Sbjct: 428 SKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAF-DTMIESYTQNSTGRHNMDDL 485

Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCK 164
           A  +  H T   E   GK      F K  I             T   H   W+   +   
Sbjct: 486 AARYLGHKTIPFEELAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQ--- 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                  EL K      + E  L  +   I   G  ID   +L     I +  ++++  +
Sbjct: 543 -----EPELVKLF---DEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLV 594

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283
                     +  T  L+  LF   G+ ++  +     S  +   + +LA+   ++ +L 
Sbjct: 595 HAEAGQTFNLA-STKQLQEILFEKLGLPVLKKTPKGAPST-NEEVLDELAQQGHLVPKLL 652

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L + ++   GR+  +      + TGR S      QN+P +    
Sbjct: 653 MEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYN-QAVTATGRLSSSDPNLQNIPIR---- 707

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  G K+V AD + IE R++A ++ ++ 
Sbjct: 708 --------------------NEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEG 747

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            I AFA G+DI+  T A+ F   + +V+ EQR   K +   L Y       +       +
Sbjct: 748 MINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSNQLGIGRA 807

Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492
                +  + Q   +   F                           +S +  ++      
Sbjct: 808 EAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAILRKAAERV 867

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A+   + GTA +++K A       +              ++    +    V  V    + 
Sbjct: 868 AINAPMQGTAADIIKVAMIGIDNAIRD---------NDEIKMIMQVHDELVFEVKADKID 918

Query: 553 RHKRDVHIVLPSSRRL 568
            + + +   +  +  L
Sbjct: 919 HYSQLIKTEMEKAISL 934


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 107/580 (18%), Positives = 191/580 (32%), Gaps = 109/580 (18%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P    +  + +   A +A     A+   D PV+L     +  + + L  +
Sbjct: 341 SFDTETTSLDPMVAQIVGISIAVEAGKAAYIPVAHHGPDAPVQLP----RDEVLAKLKPW 396

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL---N 117
           L       V  +  ++  +     GI +       T + +             LAL    
Sbjct: 397 LESRDKKKVGQHLKYDEQVLANY-GITMDGIE-HDTLLQSYVLESHRPHDMDNLALRHLG 454

Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                 +   GK      F + ++D                   EY   D + T  L + 
Sbjct: 455 LKTIKYEDVAGKGASQIGFDEVALDKA----------------SEYAAEDADITLRLHQT 498

Query: 177 LIPLSDGERDL-----------WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P    E  L             + + +   G  ID++ +      IA    +L+    
Sbjct: 499 LYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEIATRLVELERQAY 558

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L  G   +      +    F    + +V  +     S      + +LA+D  L +    
Sbjct: 559 DLAGGEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKTILE 616

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   V++  GR+         + TGR +      QN+P +      
Sbjct: 617 HRGLSKLKSTYTDKLPRMVNASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 670

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G KLV AD + IE R++A I+G++  +
Sbjct: 671 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDEALL 711

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF  GEDI+  T ++ F+    +VS +QR I KV+   L Y       A          
Sbjct: 712 RAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINFGLIYGMSSFGLASNLGITRDAA 771

Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494
            L + ++       + + +            E      LW+          +      A+
Sbjct: 772 KLYIDRYFARYPGVAAYMENTRTSAKMKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 831

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
              + GTA +L+K +  A          + + ++Q+  +L
Sbjct: 832 NAPMQGTAADLIKLSMIAVQKWIEESGIRTRMIMQVHDEL 871



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKN 620
            RRL   ++ G       A     R            +Q  + D++   M        ++
Sbjct: 807 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQKWIEES 857

Query: 621 GYDI--VLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
           G     ++ VHDE+V E PD     V   L  LM 
Sbjct: 858 GIRTRMIMQVHDELVLEVPDDELSDVRKRLPELMC 892


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L        + + L  +L 
Sbjct: 50  DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----SDEVLAKLTPWLE 105

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 106 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 163

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 164 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 207

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 208 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 267

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 268 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 325

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 326 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 377

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 378 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 420

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 421 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 480

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 481 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 540

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 541 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 600

Query: 543 VANVP 547
           VA + 
Sbjct: 601 VAKLK 605



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 514 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 564

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 565 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 599


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 398 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 453

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 454 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 509

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 510 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 567

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 568 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 621

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 622 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 680

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 681 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 729

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 730 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 775

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 776 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 835

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 836 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 895

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 896 GTASDLIKRAM 906


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 104/562 (18%), Positives = 188/562 (33%), Gaps = 89/562 (15%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             +   L     D   + VAHN  F+  +  K   I+I  K    T ++A          
Sbjct: 369 EFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHD 426

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L+    EHL         IA   K        D          ++  +Y   D + T
Sbjct: 427 MDSLS---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADIT 474

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             LF     L +            E  L ++   +   G +ID   +++    +    K+
Sbjct: 475 FRLFNYFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKE 534

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+     L     + S     LR  LF   G+  V  +    +   S   + QLA+D  +
Sbjct: 535 LESKCYNLAGQEFKLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEI 592

Query: 280 NRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L      + KL     + L + + ++GR+  +    G + TGR S      QN+P + 
Sbjct: 593 AALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS 651

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA NG  +V AD + IE R++A ++ 
Sbjct: 652 ------------------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSK 687

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   +KAF    DI+  T A+     ID+VS EQR   K +   L Y       A+  + 
Sbjct: 688 DKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEI 747

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489
             +     +  +     S   +                         +  S ++  ++  
Sbjct: 748 PRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAA 807

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+   + GTA +++KKA    +  + Q        +   ++    +    V  V + 
Sbjct: 808 ERAAINAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKT 860

Query: 550 VMRRHKRDVHIVLPSSRRLVYS 571
            +      +  ++ ++ +L   
Sbjct: 861 KLEEIVAKIKSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 53  DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 108

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 109 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 166

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 167 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 210

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 211 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 270

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 271 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 328

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 329 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 380

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 381 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 423

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 424 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 483

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 484 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 543

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 544 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 603

Query: 543 VANVP 547
           VA + 
Sbjct: 604 VAKLK 608



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 517 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 567

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 568 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 602


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 109/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        S+LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDSMLASYIIESHLGHGLD-ELSG 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 184/558 (32%), Gaps = 89/558 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L     D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +    EHL         IA   K        D          ++  +Y   D + T  LF
Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478

Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                L +            E  L  +   +   G +ID   +++    +    K+L+  
Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L       S     LR  LF   G+  V  +    +   S   + QLA+D  +  L 
Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L + + ++GR+  +    G + TGR S      QN+P +     
Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA +G  +V AD + IE R++A ++ +   
Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +K F    DI+  T A+     ID+VS EQR   K +   L Y       A+  +   + 
Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +     S   +                         +  S ++  ++     A
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++KKA    +  + Q        +   ++    +    V  V +  +  
Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864

Query: 554 HKRDVHIVLPSSRRLVYS 571
               +  ++ ++ +L   
Sbjct: 865 IVAKIKSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 47  DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 102

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 103 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 160

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 161 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 204

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 205 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 264

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 265 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 322

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 323 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 374

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 375 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 417

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 418 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 477

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 478 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 537

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 538 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 597

Query: 543 VANVP 547
           VA + 
Sbjct: 598 VAKLK 602



 Score = 44.3 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 511 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 561

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 562 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 596


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 46  DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 101

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 102 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 159

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +                    EY   D + T +L   L 
Sbjct: 160 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 203

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA     L+++   L
Sbjct: 204 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 263

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 264 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 321

Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+ D GR+         + TGR +      QN+P +        
Sbjct: 322 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 373

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G K+V AD + IE R++A I+ ++  ++A
Sbjct: 374 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 416

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 417 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 476

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            + ++       + + +  +  +             LW+          +      A+  
Sbjct: 477 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 536

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+      ++ E    +V+E        
Sbjct: 537 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 596

Query: 543 VANVP 547
           VA + 
Sbjct: 597 VAKLK 601



 Score = 44.3 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621
            RRL   ++ G       A     R            +Q  + D++   M         G
Sbjct: 510 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 560

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
                +++ VHDE+V E P+     V   L  +M 
Sbjct: 561 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 595


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 205/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLP----RDEVLAKLKPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D +   +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +D                   EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPLDKA----------------SEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA    +L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+   GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA+ G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKD 496
            + ++       + + +            E      LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC----VVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+  +L          VV+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +T   A +  +   +    VA        R K   ++     RRL   ++ G       A
Sbjct: 774 ITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQA 833

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETP 637
                R            +Q  + D++   M        + G+   +++ VHDE+V E P
Sbjct: 834 A---ERAAINAP------MQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVP 884

Query: 638 DTPYFSV-GTLCSLMT 652
           +     V   L  +M 
Sbjct: 885 ENELSVVREKLPEMMC 900


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 205/605 (33%), Gaps = 113/605 (18%)

Query: 7   DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 351 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLP----RDEVLAKLKPWLE 406

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D +   +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 407 DASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464

Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             K E+  GK      F +  +D                   EY   D + T +L   L 
Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPLDKA----------------SEYAAEDADITLQLHHALY 508

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             D E  + L+ + +   G  ID D + +    IA    +L+++   L
Sbjct: 509 PQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVL 568

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             G   +      +    F    + +V  +     S      + +LA+D  L +L     
Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+   GR+         + TGR +      QN+P +        
Sbjct: 627 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA+ G K+V AD + IE R++A I+ ++  ++A
Sbjct: 679 -----------------AEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRA 721

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L
Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781

Query: 458 DLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKD 496
            + ++       + + +            E      LW+          +      A+  
Sbjct: 782 YIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC----VVQEGGSISARR 542
            + GTA +L+K +  A            + ++Q+  +L          VV+E        
Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCG 901

Query: 543 VANVP 547
           VA + 
Sbjct: 902 VAKLK 906



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +T   A +  +   +    VA        R K   ++     RRL   ++ G       A
Sbjct: 774 ITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQA 833

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETP 637
                R            +Q  + D++   M        + G+   +++ VHDE+V E P
Sbjct: 834 A---ERAAINAP------MQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVP 884

Query: 638 DTPYFSV-GTLCSLMT 652
           +     V   L  +M 
Sbjct: 885 ENELSVVREKLPEMMC 900


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 201/586 (34%), Gaps = 99/586 (16%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            A     A+ + D P +L    ++SA+ +     L D+    V  +  +++ +       
Sbjct: 378 DAAYLPLAHDYVDAPQQL----DRSAVLALFKPLLEDKNKAKVGQHLKYDKNVLANY--- 430

Query: 87  DIPSKRWICTSVLART--NGLPSSLKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSI 140
           DI  +     ++L     N + +      LA   L  S    +   GK      F +  +
Sbjct: 431 DINLQGIAYDTMLESYVLNSVATRHDMDSLAQYYLGLSTVHFEDIAGKGAKQLTFNQIPL 490

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWL 189
           D                   +Y   D + T  L   +             L++ E  L  
Sbjct: 491 DQAA----------------QYAAEDADITLRLHNHIWQKLHQTPELASVLTEIEVPLAT 534

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G  ID   + +  + +A    +L+ ++ +L      +   T  L+  LF   
Sbjct: 535 VLAKMEQFGVLIDSQKLSQQSQDLATRIMQLEREVHELAGEEF-NLGSTKQLQEILFNKL 593

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303
            + ++  +     S  S   + +LA    L +L      + KL     + L + ++   G
Sbjct: 594 SLPVLKKTPKGAPST-SEEVLQELALTYPLPKLLMEFRVLSKLKNTYTDKLPKMINPRSG 652

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P +                              
Sbjct: 653 RVHTSY-HQAITATGRLSSTEPNLQNIPIRT------------------------EQGRR 687

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   IA  G K+V AD + IE R++A ++ ++  +KAF+ G+DI+  T A+ FN  + +
Sbjct: 688 VRQAFIARPGYKIVAADYSQIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVFNVSLTE 747

Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST-STFEDWEQA 478
           V+ EQR   K +   L Y   A    K            +  + +         ED    
Sbjct: 748 VTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRHDAQHYMDLYFERYPGVLKYMEDSRIV 807

Query: 479 ESHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
              + ++                    +      A+   + GTA +++KKA       + 
Sbjct: 808 AKENGYVSTVFGRRLYLPDINASNGLRRKGAERAAINAPMQGTAADIIKKAMLKVDAWID 867

Query: 519 QLWKDLTEGFACVVQEGG-SISARRVANVPRLVMRRHKRDVHIVLP 563
            L  D T     V  E    I  + V N    ++   ++ V + +P
Sbjct: 868 TLPSDQTRMIMQVHDELIFEIKEQNVENDKNTIVDLMEKAVSLDVP 913



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M            +   +++ VHDE++ E  +    +   T+  LM K 
Sbjct: 848 QGTAADIIKKAMLKVDAWIDTLPSDQTRMIMQVHDELIFEIKEQNVENDKNTIVDLMEKA 907


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 95/581 (16%), Positives = 187/581 (32%), Gaps = 98/581 (16%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56
           D ET S           Y E A +   ++A +                        +   
Sbjct: 349 DTETTSLN---------YME-AELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLLEK 398

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS------SLK 110
           +   L       V  +  ++  +  +  GI++    +  T + +      +      SL 
Sbjct: 399 MKPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIEF-DTMLESYVLNSTATRHDMDSLA 456

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  L L   +      +GK  +         + PY    A+                E  
Sbjct: 457 DRYLGLKTIKFEDIAGKGKKQLTFNQIELEQAAPYAAEDADITLRLHQAINAQLSKDETL 516

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             +F       D ER L  +   I   G  +D  ++ +    +A+   +L+     +   
Sbjct: 517 TSVFN------DIERPLIPVLSHIERNGALVDASMLGEQSIELAERMVELERQAYDIAGK 570

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               +     L+  LF    I ++  +     S      + +LA D  L +L     ++ 
Sbjct: 571 EFNLA-SPKQLQQILFEELSIPVIKKTPKGAPSTAEE-VLQELALDYPLPKLILEHRSLS 628

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   ++   GR+  +      + TGR S      QN+P +           
Sbjct: 629 KLKSTYTDKLPLMINPGTGRIHTSY-HQAVTATGRLSSTDPNLQNIPVRT---------- 677

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G K+V AD + IE R++A ++ +   + AF+ 
Sbjct: 678 --------------QEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSK 723

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G DI+  T A+ F   +D+VS +QR   K +   L Y       AK            ++
Sbjct: 724 GADIHRATAAEVFKVELDQVSDDQRRSAKAINFGLIYGMSAFGLAKQLGIARKDAAQYIE 783

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + D                       + ++ +   +      A+   + 
Sbjct: 784 HYFETYPGVQHYMDDIRAKAQEQGYVETLFGRRLYLPEIKARNAMRRQAAERTAINAPMQ 843

Query: 500 GTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534
           GTA +++K+A      W A+    +++   + +     V++
Sbjct: 844 GTAADIIKRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRD 884



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNATK----NGYDI--VLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           Q  + DI+   M    K    + +D+  ++ VHDE+V E  DT   S V  +   M   
Sbjct: 843 QGTAADIIKRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRDTQVDSFVEAVKDKMATA 901


>gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 103/601 (17%), Positives = 189/601 (31%), Gaps = 113/601 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDL-LQY-- 60
            ID ET S +P+           A I   ++A +                P  L L    
Sbjct: 341 AIDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAVL 390

Query: 61  ------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                 L D +   +  N  ++R +F    GI +   R   T + +             L
Sbjct: 391 ARLKPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVR-HDTMLESYVLEAHKPHSLESL 448

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A           E        C   ++  P+               EY   D E    + 
Sbjct: 449 AERHLGRKGLSYED------LCGKGVNQIPFAQVDV------ARATEYSAEDSEMALHVH 496

Query: 175 KRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P  +            E  +  +   I   G  +D   + +    +A+    L+++
Sbjct: 497 QVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVALEQE 556

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  + +    +      +   LF   G+ +   +     S      +T+LA D  L    
Sbjct: 557 VYAIAEQPF-NLGSPKQIGEILFGKLGLPVKKRTASGAPST-DEDVLTELAADYPLPARI 614

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     + L   V+   GR+         + TGR +      QN+P +    
Sbjct: 615 LEHRSLAKLKGTYTDKLPAMVNPATGRVHTNYA-QAVAVTGRLASNEPNLQNIPIRT--- 670

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     VR   +A  G  ++ AD + IE R++A I+ ++ 
Sbjct: 671 ---------------------PEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISEDEG 709

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            ++AF+ G D++  T A+ F  P+ +V+ EQR   KV+   L Y  G    A        
Sbjct: 710 LLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMGAYGLAANLGIEQK 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQ----------YPEF 492
                + ++         + D  +  +             LW+ +               
Sbjct: 770 AAKDYIDRYFARFAGVKRYMDETRVRAKEKGYVETVFGRRLWLPEINSGNGPRRSGAERQ 829

Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           A+   + GTA +L+K A  A            + V+Q+  +L         +    +  R
Sbjct: 830 AINAPMQGTAADLIKLAMIAVQKELDASGRATRMVMQVHDELVLEVPEAELDWAKDAIPR 889

Query: 543 V 543
           +
Sbjct: 890 L 890



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMT 652
           Q  + D++   M    K          +V+ VHDE+V E P+    ++   +  LM 
Sbjct: 836 QGTAADLIKLAMIAVQKELDASGRATRMVMQVHDELVLEVPEAELDWAKDAIPRLMA 892


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 105/594 (17%), Positives = 201/594 (33%), Gaps = 95/594 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D     
Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + +S  D R+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPDMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A             K + ++Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQI 904


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 100/600 (16%), Positives = 191/600 (31%), Gaps = 112/600 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD--- 56
            +D ET S   +           A I   +++           T       + +P D   
Sbjct: 371 AVDTETTSLDEML----------AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEVL 420

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L +  +  +  +  ++R +F    GI++       T + +    +      A L
Sbjct: 421 ARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVHKPHGLASL 478

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A            G++ I       +        + N V   +   EY   D + T ++ 
Sbjct: 479 AER--------HVGRSGINY---EDLCGKGVHQIKFNQVDIAKA-AEYSCEDSDQTLDVH 526

Query: 175 KRLIP---LSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + L P    +D  R ++ L+         I   G  ID   + K    +     +L+ + 
Sbjct: 527 RVLWPQIEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIVQLEAEA 586

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      +    F   G+ +V  +     S      + +LA+D  L     
Sbjct: 587 HELAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPST-DEEVLEKLAEDYPLPAKIL 644

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L++      GR+         + TGR S      QN+P       
Sbjct: 645 EHRGLSKLKGTYTDKLAQLAHPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIP------- 696

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   +A  G  +  AD + IE R++A ++ ++  
Sbjct: 697 -----------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLSEDEAL 739

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           ++AF  G D++  T A+ F   +D+VS EQR   KV+   L Y       A+        
Sbjct: 740 LRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETKA 799

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++ Q       + D  +  +      +                          A
Sbjct: 800 AAAYIDRYFQRYPGVKHYMDETRLSAKSKGYVETVFGRRLYLPEINSPNGPRRGGAERAA 859

Query: 494 VKDKLIGTACELVK----------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + GTA +L+K           A +   + ++Q+  +L         E   +   R+
Sbjct: 860 INAPMQGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHDELVFEVPEAEVEWVRVEIPRI 919



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMT 652
           Q  + D++   M          K    +++ VHDE+V E P+     V   +  +M 
Sbjct: 865 QGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHDELVFEVPEAEVEWVRVEIPRIMA 921


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 106/575 (18%), Positives = 199/575 (34%), Gaps = 95/575 (16%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 355 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 410

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 411 PHLENPVLKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 466

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 467 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 524

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      G 
Sbjct: 525 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQ 577

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
           + +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 578 LFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 637

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 638 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 686

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 687 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 732

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 733 GEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 792

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 793 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 852

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524
           GTA +L+K+A             + + ++Q+  +L
Sbjct: 853 GTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDEL 887


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 105/600 (17%), Positives = 186/600 (31%), Gaps = 112/600 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDL------ 57
            +D ET S   +           A I   +++             E   +P  L      
Sbjct: 358 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVL 407

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L D     +  +  +++ +F    GI +       T + +             L
Sbjct: 408 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 465

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL          E        C    +  P+     +   A+         D + T ++ 
Sbjct: 466 ALRHVSRSGISYED------LCGKGKNQIPFAQVSVDKAAAYS------CEDSDQTLDVH 513

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P          + + E         I   G  ID   + +    +     KL+E+ 
Sbjct: 514 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 573

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++       S     L    F   G+ +V  +  T         + +LA+D  L     
Sbjct: 574 YEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLL 631

Query: 285 SGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L++ A+ SDGR+         + TGR S      QN+P +     
Sbjct: 632 EHRSLSKLKGTYTDKLAQMALPSDGRVHTHYA-QAVAVTGRLSSNDPNLQNIPVRT---- 686

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   +A  GK +  AD + IE R++A ++G++  
Sbjct: 687 --------------------PEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEAL 726

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF NG D++  T A+ F   +D+VS EQR   KV+   L Y       AK        
Sbjct: 727 LSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 786

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++ Q       + D     +H     +                          A
Sbjct: 787 AAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAA 846

Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + GTA +L+KKA  A              ++Q+  +L        ++        +
Sbjct: 847 INAPMQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPSI 906


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 97/556 (17%), Positives = 178/556 (32%), Gaps = 101/556 (18%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           + D+  +  + + L  +L       V  N+ +++ +F    GI +       T + +   
Sbjct: 371 VADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVFANH-GIALSGIA-HDTMLQSYVI 428

Query: 104 GLPSSLKNACL---ALNFSEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLF 159
                     L    L  +    +   GK      F +  I                +  
Sbjct: 429 ESDKGHDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDI----------------ERA 472

Query: 160 GEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             Y   D + T  +   L P             + E     +   I   G  ID D++ +
Sbjct: 473 ATYAAEDSDVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSR 532

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
               + Q+   L+    +L       +     L   LF   G+ +   +     S     
Sbjct: 533 QSHEMGQKIMALEAQAYELAGQPFNLA-SPKQLADILFEKQGLPVKKKTPSGGPST-DEE 590

Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
            +++LA D  L +L     ++ KL     + L   V+   GR+        A  TGR + 
Sbjct: 591 VLSELALDYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFS-QAAVVTGRLAS 649

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +                              +R+  IA  G  +V AD +
Sbjct: 650 SDPNLQNIPVRS------------------------EEGRKIRTAFIAPAGSSIVSADYS 685

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++G++  + AFA+GED++  T  + F     +V  +QR + K +   L Y 
Sbjct: 686 QIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFGLIYG 745

Query: 443 GG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLW--- 484
                 A+      S     + ++       + + +            E A    LW   
Sbjct: 746 MSAFGLARQLGLERSAAQTYIDRYFARYPGVARYMEEARESARQHGYVETAFGRRLWFPD 805

Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEG 527
                   +      A+   + GTA +L+K A  A          K + +LQ+  +L   
Sbjct: 806 IRSSNGNRRQGAERAAINAPMQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHDELLLE 865

Query: 528 FACVVQEGGSISARRV 543
                         R+
Sbjct: 866 VPDGELMDVRTHLPRL 881


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/594 (17%), Positives = 200/594 (33%), Gaps = 95/594 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 352 TIGIDTETTSLDAMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 407

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 408 PHLENPVLKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 464 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAASQP 575

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 789

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 849

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A             K + ++Q+  +L         +       ++
Sbjct: 850 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQI 903


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 101/552 (18%)

Query: 37  WDDEPVKLWDRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
               PV        S +P     S L + L D +V+ V  N  +  ++ K+  GI + S 
Sbjct: 460 LGGGPV-------DSQVPVREALSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSF 511

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                       G  +   ++             ++                  D  +A 
Sbjct: 512 DDTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDVTGTGRSSLTFDF----VDIDKAT 567

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
                     Y   D +    L+  L P              ER L  +   + +RG  +
Sbjct: 568 A---------YAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITV 618

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D  ++ +L   +AQ    L+++I +L             L   LF   G+     ++ T 
Sbjct: 619 DRQILSRLSGELAQGAAALEDEIYRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TG 676

Query: 262 KSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGA 314
           +   S   +  LA     L R       + KL     + L   V  +  R+        A
Sbjct: 677 QWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAM-AA 735

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +                              +R+  +A+ G 
Sbjct: 736 TTTGRLSSSDPNLQNIPIRT------------------------GEGRKIRTAFVATPGH 771

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D +  E R   K 
Sbjct: 772 KLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKA 831

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474
           +   + Y     G A       S  G  ++++ +       + +                
Sbjct: 832 INFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIF 891

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523
                +    S +  M+      ++   + G+A +++++A       +       ++   
Sbjct: 892 GRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQ 951

Query: 524 LTEGFACVVQEG 535
           + +     V++G
Sbjct: 952 VHDELIFEVEDG 963


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/595 (17%), Positives = 188/595 (31%), Gaps = 104/595 (17%)

Query: 6   IDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ID ET S   +    VGV    E   A     A+ + D P +L        + + L  +L
Sbjct: 368 IDTETTSLDEMVARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLP----FDEVLARLKPWL 423

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +     +  +  ++R +F    GI++       T + +           A LA      
Sbjct: 424 ENPAKKKLGQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEAHRPHGLASLAERHL-- 479

Query: 122 LTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                 G++ I+    C       P+               EY   D + T ++   L P
Sbjct: 480 ------GRSGISYEDLCGKGAHQIPFSQVDI------AKAAEYSCEDSDQTLDVHLALWP 527

Query: 180 LSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             + +  L  + Q           +   G  ID   +      +      L+++  ++  
Sbjct: 528 QIERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIAG 587

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +    F   G+ +V  +     S      + +LA+D  L         +
Sbjct: 588 QPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPST-DEEVLEKLAEDYPLPAKILEHRGL 645

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L +  +   GR+         + TGR S      QN+P +          
Sbjct: 646 SKLKGTYTDKLGQLANPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT--------- 695

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR   IA  G  +  AD + IE R++A I+G++  ++AF 
Sbjct: 696 ---------------PEGRRVREAFIAPPGSVIASADYSQIELRIMAHISGDESLLRAFR 740

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G D++  T A+ F    D+VS EQR   KV+   L Y       A+            +
Sbjct: 741 EGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETKAAASYI 800

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498
            ++         + D  +A +      +                          A+   +
Sbjct: 801 DRYFARYPGVKAYMDETKALAKEKGYVETVFGRRLYLPEINSPNGPRRGGAERAAINAPM 860

Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            GTA +L+K +           +   + ++Q+  +L         E       R+
Sbjct: 861 QGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDELVFEVPEAEIEWVRTEIPRL 915


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/594 (18%), Positives = 201/594 (33%), Gaps = 95/594 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           K+ ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 351 KIGIDTETTSLDAMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQL-DL---QYVLGYLK 406

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 407 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 462

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 463 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 520

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 521 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 574

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 575 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 633

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 634 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 682

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 683 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 728

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 729 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 788

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 789 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 848

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A             K + ++Q+  +L         +       ++
Sbjct: 849 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDSVKEKLPQI 902


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/593 (17%), Positives = 200/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +A+     ++    P +  D      +   L 
Sbjct: 352 TIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAP-EQIDL---QDVLGRLK 407

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D     
Sbjct: 464 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++   +    
Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKLEQEAYAVAGQP 575

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLITAFQN 729

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 730 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKTFID 789

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 849

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 850 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 902


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/559 (16%), Positives = 171/559 (30%), Gaps = 101/559 (18%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           P++  D   +    + L   L D +V+ V  N  ++  +  +  G+ +     +      
Sbjct: 426 PLQQID---KPTALARLKDLLEDPSVLKVGQNIKYDLAVMAR-RGVRVAPIDDVMLISYV 481

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAW 156
              GL     +    L+        +     GK+    F    + S              
Sbjct: 482 LEGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQ-KSFKHVELKSAVC----------- 529

Query: 157 QLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLV 206
                Y   D + T  L + L P              ER +  +   +   G R+D D +
Sbjct: 530 -----YAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDRL 584

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
             L     Q   +L+E+  KL      +      +   LF    +     +    +    
Sbjct: 585 RSLSSTFGQRMAELEEEAHKLAGRPF-NVGSPRQIGEILFGEMNLPGGKKTASG-QWGTD 642

Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            S +  LA+   L R       + KL     + L  A+        T     A+ TGR +
Sbjct: 643 ASVLEDLAQSHPLPRTILDWRQLSKLKGTYTDALVAAMDPQTNRVHTSYQLAAATTGRLA 702

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +  +                           +R   IAS G  L+ AD 
Sbjct: 703 SSDPNLQNIPIRTET------------------------GRQIRQAFIASPGHVLISADY 738

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA I       +AF +G DI+  T ++ F  P++ +  E R   K +   + Y
Sbjct: 739 SQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIIY 798

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------ 485
                G A          G  ++ + +       + D  +A                   
Sbjct: 799 GISAFGLAAQLGIDQGEAGAYIKTYFERFPGIRDYMDRTKALVKEQGFVTTVFGRRIHIP 858

Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTE 526
                    +      A+   + G A +++++A             + + +LQ+  +L  
Sbjct: 859 AIHSKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPGALAEAGLQTRMLLQVHDELVF 918

Query: 527 GFACVVQEGGSISARRVAN 545
                  E      RR+  
Sbjct: 919 EAPEAEAERAVAVIRRIME 937


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 101/552 (18%)

Query: 37  WDDEPVKLWDRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
               PV        S +P     S L + L D +V+ V  N  +  ++ K+  GI + S 
Sbjct: 460 LGGGPV-------DSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSF 511

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                       G  +   ++             ++                  D  +A 
Sbjct: 512 DDTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDVTGTGRSSLTFDF----VDIDKAT 567

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
                     Y   D +    L+  L P              ER L  +   + +RG  +
Sbjct: 568 A---------YAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITV 618

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D  ++ +L   +AQ    L+++I +L             L   LF   G+     ++ T 
Sbjct: 619 DRQILSRLSGELAQGAAALEDEIYRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TG 676

Query: 262 KSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGA 314
           +   S   +  LA     L R       + KL     + L   V  +  R+        A
Sbjct: 677 QWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAM-AA 735

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +                              +R+  +A+ G 
Sbjct: 736 TTTGRLSSSDPNLQNIPIRT------------------------GEGRKIRTAFVATPGH 771

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D +  E R   K 
Sbjct: 772 KLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKA 831

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474
           +   + Y     G A       S  G  ++++ +       + +                
Sbjct: 832 INFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIF 891

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523
                +    S +  M+      ++   + G+A +++++A       +       ++   
Sbjct: 892 GRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQ 951

Query: 524 LTEGFACVVQEG 535
           + +     V++G
Sbjct: 952 VHDELIFEVEDG 963


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/495 (16%), Positives = 157/495 (31%), Gaps = 81/495 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +V+ V HN  ++  +     G+ +           A          +    L
Sbjct: 406 LKPLLADPSVLKVGHNIKYDMQVMAMQ-GLAVEPFDDTMLLSYALDGASHGHGLDELCLL 464

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +         E        C    +   +D    +  + +         D + T  L   
Sbjct: 465 HLGHANIPFSEV-------CGSGRNQVTFDRVPLDKARDY------AAEDADMTLRLHAL 511

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              ER L  +   +   G ++D   ++ L E   +   +L+ +++ 
Sbjct: 512 LKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMALSEDFGRRLTELETEVIA 571

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L +G   +      L   LF    +     ++ T +       + +LA    L       
Sbjct: 572 LNNGEAFNLGSPQQLGKVLFETLNLPGGKKTK-TGQWATGADVLEELAPLHALPARLLDW 630

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L   ++   GR+  +     A+ TGR S      QN+P +       
Sbjct: 631 RQLSKLKGTYTDALVAQINPATGRVHTSYSL-AATTTGRLSSSDPNLQNIPIRT------ 683

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  GKKLV AD + IE R++A +A       
Sbjct: 684 ------------------EEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRD 725

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AFA+G DI+  T ++ F  P+D +    R   K +   + Y     G A           
Sbjct: 726 AFAHGADIHAITASQVFGVPLDGIDPALRRRAKAINFGIIYGISAFGLAAQLGIPQGEAK 785

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             ++ +         + +  + E+                      +  M+      A+ 
Sbjct: 786 AYIEAYFARYPEIRAYMERTKEEARDQGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAIN 845

Query: 496 DKLIGTACELVKKAW 510
             + G A +++K+A 
Sbjct: 846 GPIQGGAADIIKRAM 860


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 190/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 851 GTASDLIKRAM 861


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 101/552 (18%)

Query: 37  WDDEPVKLWDRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
               PV        S +P     S L + L D +V+ V  N  +  ++ K+  GI + S 
Sbjct: 460 LGGGPV-------DSQVPVRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSF 511

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                       G  +   ++             ++                  D  +A 
Sbjct: 512 DDTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDVTGTGRSSLTFDF----VDIDKAT 567

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
                     Y   D +    L+  L P              ER L  +   + +RG  +
Sbjct: 568 A---------YAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITV 618

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D  ++ +L   +AQ    L+++I +L             L   LF   G+     ++ T 
Sbjct: 619 DRQILSRLSGELAQGAAALEDEIYRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TG 676

Query: 262 KSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGA 314
           +   S   +  LA     L R       + KL     + L   V  +  R+        A
Sbjct: 677 QWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAM-AA 735

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +                              +R+  +A+ G 
Sbjct: 736 TTTGRLSSSDPNLQNIPIRT------------------------GEGRKIRTAFVATPGH 771

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           KLV AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D +  E R   K 
Sbjct: 772 KLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKA 831

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474
           +   + Y     G A       S  G  ++++ +       + +                
Sbjct: 832 INFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIF 891

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523
                +    S +  M+      ++   + G+A +++++A       +       ++   
Sbjct: 892 GRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQ 951

Query: 524 LTEGFACVVQEG 535
           + +     V++G
Sbjct: 952 VHDELIFEVEDG 963


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        S+LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDSMLASYIIESHLGHGLD-ELSG 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 851 GTASDLIKRAM 861


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/552 (19%), Positives = 192/552 (34%), Gaps = 85/552 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            K+ ID ET S       L  + +   A +AV     ++    P +L D      +   L
Sbjct: 397 EKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGHL 452

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             YL +  +  +  N  +++ +F       I        ++LA         +GL   L 
Sbjct: 453 KPYLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 508

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I         +  Y    A+     +      + D E  
Sbjct: 509 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 566

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+++++      E  +  +   +   G +ID   + +    +  E  KL+++       
Sbjct: 567 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQ 620

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++
Sbjct: 621 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 679

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +S  DGR+  T      + TGR +      QN+P +          
Sbjct: 680 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 729

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   I AF 
Sbjct: 730 ---------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 774

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F T  + VS EQR   K +   L Y  G    AK            +
Sbjct: 775 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 834

Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498
            ++       + +    + ++                      +   +      A+   +
Sbjct: 835 DRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 894

Query: 499 IGTACELVKKAW 510
            GTA +L+K+A 
Sbjct: 895 QGTASDLIKRAM 906


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L     D   + VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDIDSL 430

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +    EHL         IA   K        D          ++  +Y   D + T  LF
Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478

Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                L +            E  L ++   +   G +ID   +++    +    K+L+  
Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L       S     LR  LF   G+  V  +    +   S   + QLA+D  +  L 
Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L + + ++GR+  +    G + TGR S      QN+P +     
Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA +G  +V AD + IE R++A ++ +   
Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +K F    DI+  T A+     ID+VS EQR   K +   L Y       A+  +   + 
Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +     S   +                         +  S ++  ++     A
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++KKA    +  + Q        +   ++    +    V  V +  +  
Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864

Query: 554 HKRDVHIVLPSSRRLVYS 571
               +  ++ ++ +L   
Sbjct: 865 IVAKIKSIMEAAVKLNVP 882



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M N          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/579 (16%), Positives = 184/579 (31%), Gaps = 110/579 (18%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       +  V +    ++A     A+ +   P +L    ++  + + L   L 
Sbjct: 336 DTETTSLDYMQAEIVGVALAVATDRAAYIPLAHDYPGAPEQL----DRDLVLTRLRPLLE 391

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEH 121
           D     V  N  ++  +     GI +       + + +       S      LAL +   
Sbjct: 392 DSQRAKVGQNLKYDANVLANY-GIALRGIA-HDSMLESYVLDATGSRHDMDTLALKYLGE 449

Query: 122 LTKMEE---GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T   E   GK      F   +I                +    Y   D   T +L + L
Sbjct: 450 KTTHFEEVAGKGAKQITFNAVAI----------------EQAAPYAAEDAAVTLKLHQTL 493

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P             D E  L  +   I   G R+D  L+      + +    L++    
Sbjct: 494 WPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLAILEQSAHD 553

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L   LF    + ++  +     S  +   + +LA D  L  +    
Sbjct: 554 LAGQAF-NLGSPKQLGEILFQKLELPVLKKTPKGAPST-AEDVLAELALDYPLPAVLMEY 611

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            ++ KL     + L + +    GR+  +      + TGR S      QN+P +       
Sbjct: 612 RSLSKLRSTYTDRLPDMIDPGTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRT------ 664

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R    A  G+ +V AD + IE R++A ++ +   + 
Sbjct: 665 ------------------AEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLG 706

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF    D++  T A+ F  P++ VS +QR   K +   L Y       AK  +       
Sbjct: 707 AFGANLDVHSATAAEVFGVPLEDVSSDQRREAKAINFGLIYGMSAFGLAKQLRLGRHEAQ 766

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             + ++ +     + +                         +  + +   Q      A+ 
Sbjct: 767 AYIDRYFERYPGVADYMTQTRELAHSQGYVETLFGRRLYLPEINARNKQRQMAAERTAIN 826

Query: 496 DKLIGTACELVKKAWRAKHQ----------GVLQLWKDL 524
             + GTA +++K A  A  +           ++Q+  +L
Sbjct: 827 APMQGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDEL 865



 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNATK--NGYDI----VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+   M    +  +  DI    ++ VHDE+V E  DT   ++   +  LM   
Sbjct: 830 QGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDELVFEVADTEVATLTSAIPDLMADV 888


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 189/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 352 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 407

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 464 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 575

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 789

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINAPMQ 849

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 850 GTASDLIKRAM 860


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/577 (16%), Positives = 183/577 (31%), Gaps = 106/577 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  PL    +G+   AE  QA      + +   P +L    E+    + L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPAQL----ERRQALAQLAPLLT 415

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           D  V  +  +  ++  + ++  GI +       T + +       +      LA  +   
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH-GIALAGYSD-DTLLQSFVLNSGSARHDMDSLAKRYL-- 471

Query: 122 LTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                 G   +     C       P+     +    +         D + T  L   L P
Sbjct: 472 ------GYDTVKYEDVCGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGP 519

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        + E  L  +   I   G  +D   + +    +++      +   +L 
Sbjct: 520 KLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 579

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L+  LF    +  V  +     S    + +  +A    L R+      
Sbjct: 580 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRG 637

Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L E +    GR+  +    GA+ TGR S      QN+P +         
Sbjct: 638 LTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 690

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G+KL+  D + IE R++A ++G+   + AF
Sbjct: 691 ------------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAF 732

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G D++  T A+ F   ID VS ++R   K +   L Y       A+            
Sbjct: 733 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 792

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           +  +         F +  + ++      +                          A+   
Sbjct: 793 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 852

Query: 498 LIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           + GTA +++K+A  +              +LQ+  +L
Sbjct: 853 MQGTAADIIKRAMVSVDAWIADHAEHALMILQVHDEL 889



 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 10/172 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 610 LCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M +             ++L VHDE+V E       + +G + + M+  
Sbjct: 861 IKRAMVSVDAWIADHAEHALMILQVHDELVFEADADFVDTLLGEVTARMSAA 912


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/602 (17%), Positives = 190/602 (31%), Gaps = 103/602 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL---- 57
           D ET S       L  V +     +A     A+      V   D    +  +P  +    
Sbjct: 436 DTETTSLDPMQADLVGVSLALAPNEACYIPLAH------VGAGDGLFTEGLLPGQIPFND 489

Query: 58  -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
                   L D   + + HN  ++  +  +  GI +           A   G      + 
Sbjct: 490 ALAALKGMLEDGGTLKIGHNVKYDAAVLARH-GITVAPYDCTMCMSYALDAGRGGHGMDE 548

Query: 113 CLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRD 166
                         E    GK+ I  F +  +++            ++ W++        
Sbjct: 549 LSIKYLGHTPIAFTEVAGKGKSQIT-FDRVPLEAATAYAAEDADVTLRLWRVLKPRLPS- 606

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    +++ L      ER L  +   +  RG  ID   + +L    AQ   +L+++I  
Sbjct: 607 -EGMTTVYETL------ERPLIAVLARMEARGISIDRATLARLSSEFAQGAARLEDEISG 659

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285
           L    I +      +   LF    +     +  T       + + +LA+    L +   +
Sbjct: 660 LAGEKI-NVGSPKQIGDLLFGKMQLPGATKTP-TGAWSTKANVLDELAEAGHELPQKILA 717

Query: 286 GSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              + KL     + L   V+       T     A+ TGR S      QN+P +       
Sbjct: 718 WRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATTTGRLSSSEPNLQNIPIRT------ 771

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  G KLV AD + IE R+LA IA      +
Sbjct: 772 ------------------EEGRRIRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQ 813

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A          G
Sbjct: 814 AFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLGIPRDEAG 873

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             ++++ +       + D                     +    + +  ++      A+ 
Sbjct: 874 QYIKRYFERFPGIRAYMDETRAYCREHGYVETLFGRRCHYPDIAASNPSIRAFNERAAIN 933

Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
            +L GTA +++++A               + +LQ+  +L         E      RRV  
Sbjct: 934 ARLQGTAADIIRRAMIRMEGALADAGLSARMLLQVHDELVFEVPDAEVEATLPVVRRVME 993

Query: 546 VP 547
             
Sbjct: 994 TA 995



 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN 654
           Q  + DI+   M               ++L VHDE+V E PD     ++  +  +M   
Sbjct: 937 QGTAADIIRRAMIRMEGALADAGLSARMLLQVHDELVFEVPDAEVEATLPVVRRVMETA 995


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/593 (18%), Positives = 200/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 115/606 (18%), Positives = 204/606 (33%), Gaps = 115/606 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +L 
Sbjct: 43  DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 98

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
           D     +  +  ++  +     GI +       T + +       +     LAL      
Sbjct: 99  DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 156

Query: 122 LTKME----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             K E    +G   I                  + V   Q F EY   D + T +L   L
Sbjct: 157 TIKYEDVAGQGAQQIGF----------------DEVPLAQAF-EYAAEDADITLQLHHAL 199

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P             D E  + L+ + +   G  ID D + +    IA     L+++   
Sbjct: 200 YPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYA 259

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L  G   +      +    F    + +V  +     S      + +LA+D  L +L    
Sbjct: 260 LAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEH 317

Query: 287 SAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L   V+ D GR+         + TGR +      QN+P +       
Sbjct: 318 RGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------ 370

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  G K+V AD + IE R++  I+ ++  ++
Sbjct: 371 ------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISEDESLLR 412

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           
Sbjct: 413 AFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAK 472

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVK 495
           L + ++       + + +  +  +             LW+          +      A+ 
Sbjct: 473 LYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAIN 532

Query: 496 DKLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISAR 541
             + GTA +L+K +  A            + ++Q+      ++ E    +V+E       
Sbjct: 533 APMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 592

Query: 542 RVANVP 547
            VA + 
Sbjct: 593 GVAKLK 598


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/562 (19%), Positives = 199/562 (35%), Gaps = 90/562 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++ D     +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLAEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVLQ 519
           L G+A +++K A  A  + + +
Sbjct: 845 LQGSAADIIKLAMIAVDKILPK 866


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/536 (16%), Positives = 187/536 (34%), Gaps = 83/536 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L ++ V+ +  N  ++ ++ K+   I + S         A   G+ +   +     
Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQH-NIVMCSFDDTMLLSYALEAGISTHGMDVLSER 500

Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
                    ++    +  I  F +  +     Y    A+  ++ WQ+         +   
Sbjct: 501 WLGHKPISYKDLTHSRRKIVSFARVDLKQATLYAAEDADITLRLWQVLKPQLV--AQKMT 558

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           ++++RL      +R L  +   + +RG  +D  ++ +L   +AQ    L E+I +L    
Sbjct: 559 KIYERL------DRPLIEILARMEERGILVDRQILSRLSGELAQTVLNLGEEIYQLVGEK 612

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290
              +     L   LF   G+     ++   +   S   + +LA +  IL R       + 
Sbjct: 613 FNIA-SPKQLGDILFGKMGLPGGTKTKSG-QWSTSAQTLEELAAEGHILPRKIIDWRQLT 670

Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   +  + GR+         + TGR S      QN+P +           
Sbjct: 671 KLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSSEPNLQNIPVRT---------- 719

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R+  +AS G  L+ AD + IE R+LA +A      +AFA 
Sbjct: 720 --------------AEGRKIRAAFVASKGHLLLSADYSQIELRILAHVADITALKEAFAK 765

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G+DI+  T ++ F   ++ ++ E R   K +   + Y     G A             +Q
Sbjct: 766 GQDIHAMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQ 825

Query: 461 QFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKDKLI 499
            + +       + +  +  + H                       ++      A+   + 
Sbjct: 826 LYFERFPGIEDYMERTKIFARHYGYVETIFGRRIHYPEIKTDKPQIRSFNERAAINAPIQ 885

Query: 500 GTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           G+A +++++A           R   + +LQ+  +L         +  +I  ++V  
Sbjct: 886 GSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVME 941


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/545 (17%), Positives = 187/545 (34%), Gaps = 101/545 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L ++ V+ +  N  ++ ++ ++    DI  + +  T +L+     G+ +   +   
Sbjct: 442 LKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDTMLLSYVLDAGISTHGMDVLS 498

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR--ANHVQAWQLFGEYCKRDVEATRE 172
                        G   IA        +   D  +  +      +    Y   D + T  
Sbjct: 499 ERWL---------GHTPIAY------KNLTCDGKKIVSFAQVDLKQATLYAAEDADITLR 543

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              +R L  +   + +RG  +D  ++  L   +AQ    L+E
Sbjct: 544 LWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGILVDRQILSCLSGELAQAALSLEE 603

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I +L       +     L   LF   G+     ++G  +   S   + +LA +  +L R
Sbjct: 604 EIYQLAGEQFNIA-SPKQLGDILFSKIGLPGGAKTKGG-QWSTSAQILEELAAEGHMLPR 661

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                  I KL     + L   +S   GR+         + TGR S      QN+P +  
Sbjct: 662 KIVDWRQIAKLKSTYTDALPSYISPKTGRVHTNYSLAT-TSTGRLSSSEPNLQNIPIRTI 720

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R+  IAS G  L+ AD + IE R+LA IA  
Sbjct: 721 ------------------------EGRKIRTAFIASEGCLLLSADYSQIELRLLAHIADI 756

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
               +AFA G+DI+  T ++ F   I+++S + R   K +   + Y     G A      
Sbjct: 757 TALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGIIYGISAFGLANQLGIS 816

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                  ++ + +      ++ +                     + + ++    ++    
Sbjct: 817 REEASHYIRVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNE 876

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + G+A +++++A               + +LQ+  +L         E      
Sbjct: 877 RAAINAPIQGSAADIIRRAMIQMEGALEKEGLSAKMLLQVHDELIFEIPKAESEKTKAIV 936

Query: 541 RRVAN 545
           ++V  
Sbjct: 937 KKVME 941


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/559 (18%), Positives = 177/559 (31%), Gaps = 102/559 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDL------ 57
            +D ET S   +           A I   +++             E   +P  L      
Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVL 413

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L D     +  +  +++ +F    GI +       T + +             L
Sbjct: 414 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL          E        C    +  P+     +   A+         D + T ++ 
Sbjct: 472 ALRHVSRSGISYED------LCGKGKNQIPFAQVSVDKAAAYS------CEDSDQTLDVH 519

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P          + + E         I   G  ID   + +    +     KL+E+ 
Sbjct: 520 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++       S     L    F   G+ +V  +  T         + +LA+D  L     
Sbjct: 580 YEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLL 637

Query: 285 SGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L++ A+ SDGR+         + TGR S      QN+P +     
Sbjct: 638 EHRSLSKLKGTYTDKLAQMALPSDGRVHTHYA-QAVAVTGRLSSNDPNLQNIPVRT---- 692

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   +A  GK +  AD + IE R++A ++G++  
Sbjct: 693 --------------------PEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEAL 732

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF NG D++  T A+ F   +D+VS EQR   KV+   L Y       AK        
Sbjct: 733 LSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 792

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++ Q       + D     +H     +                          A
Sbjct: 793 AAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAA 852

Query: 494 VKDKLIGTACELVKKAWRA 512
           +   + GTA +L+KKA  A
Sbjct: 853 INAPMQGTAADLIKKAMVA 871


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/594 (17%), Positives = 200/594 (33%), Gaps = 95/594 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           K+ ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 350 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 405

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 406 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 461

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+            + D     
Sbjct: 462 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLDAHL-RAQMDA-KQL 519

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 520 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 573

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 574 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 632

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 633 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 681

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 682 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 727

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 728 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 787

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 788 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 847

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A             + + ++Q+  +L         +       ++
Sbjct: 848 GTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQI 901


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/600 (17%), Positives = 186/600 (31%), Gaps = 112/600 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDL------ 57
            +D ET S   +           A I   +++             E   +P  L      
Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVL 413

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L D +   +  +  +++ +F    GI +       T + +             L
Sbjct: 414 ARLRPWLEDASRKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL        +          C       P+     +   A+         D + T ++ 
Sbjct: 472 ALR------HVNRSGISYEDLCGKGKSQIPFAQVPVDKAAAYS------CEDSDQTLDVH 519

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P          + + E         I   G  ID   + +    +     KL+E+ 
Sbjct: 520 NTLWPRIQVHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++       S     L    F   G+ +V  +  T         + +LA+D  L     
Sbjct: 580 YEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLL 637

Query: 285 SGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L++ A+ SDGR+         + TGR S      QN+P +     
Sbjct: 638 EHRSLSKLKGTYTDKLAQMALPSDGRVHTHYA-QAVAVTGRLSSNDPNLQNIPVRT---- 692

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   +A  GK +  AD + IE R++A ++G++  
Sbjct: 693 --------------------PEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEAL 732

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF NG D++  T A+ F   +D+VS EQR   KV+   L Y       AK        
Sbjct: 733 LSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 792

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++ Q       + D     +H     +                          A
Sbjct: 793 AAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAA 852

Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + GTA +L+KKA  A              ++Q+  +L        ++        +
Sbjct: 853 INAPMQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPAI 912


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/581 (17%), Positives = 195/581 (33%), Gaps = 111/581 (19%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET S  P    L  +     +  A      + +   P +L            L  +
Sbjct: 342 SIDSETTSLNPMQAKLVGISFCVESHHAAYLPLMHRYPGVPQQL----SFDRALKKLKPW 397

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFS 119
           L   T   +  N  +++ +F      DI        T + +             LAL   
Sbjct: 398 LESATKPKLGQNLKYDKHVFANH---DIQLNGIAHDTLLQSYVLESHRPHNMDSLALRHL 454

Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +  T       GK +    F + +ID+                  +Y   D + T  L +
Sbjct: 455 DVKTISYDDVTGKGVKRIGFDEVAIDTA----------------TQYAAEDADITFRLHQ 498

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P             + E  +  +   I   G  +D  L+ K    + ++   L++  
Sbjct: 499 ALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHALEQQA 558

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             ++     +      ++  LF    + +V  +   + S      + QLA D  L +L  
Sbjct: 559 YDISGQPF-NLNSPKQIQEILFHQLKLPIVKKTPTGVPST-DEDVLQQLALDYPLPKLLL 616

Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +  ++ KL     + L   +  + GR+         + TGR +      QN+P +     
Sbjct: 617 NYRSLSKLKSTYTDKLPLMMDRNTGRVHTNYS-QAVAVTGRLASSDPNLQNIPVRT---- 671

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G +++ AD + IE R++A I+ ++  
Sbjct: 672 --------------------SEGRRIREAFIAPAGYRIISADYSQIELRIMAHISQDEGL 711

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           +KAFA GEDI+  T A+    P+++V +EQR   KV+   L Y       A       S 
Sbjct: 712 LKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMSEFGLATQLGIERSA 771

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               ++++        ++    + ++  L   +                          A
Sbjct: 772 ARAYMERYFARYPKVESYMQQTREKARRLGYVETVLGRRLWLPEINNANGNRRQGAERAA 831

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +   + GTA +++K A  A H          + ++Q+  +L
Sbjct: 832 INAPMQGTAADIIKLAMIAVHSWLHKEKLHSKLIMQVHDEL 872


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 159/509 (31%), Gaps = 87/509 (17%)

Query: 48  TEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +   +P     + L   L D  V+ VA N+ ++  +  +  GI +              
Sbjct: 443 ADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLE 501

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
            GL     +    L+        ++    +A   KG I         A           Y
Sbjct: 502 AGLHGHGMDELSELHLGHKPIPFKQ----VAGSGKGQISFKHVALPEATA---------Y 548

Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              D + T  L+  L P              ER +  +   + + G R+D + +  L   
Sbjct: 549 AAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNE 608

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            +    + +    +L      +      +   LF    +     +  T +       +  
Sbjct: 609 FSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKT-ATGQWSTDSDVLES 666

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
           LA +  L R+      + KL       L  A++   GR+  +     A+ TGR S     
Sbjct: 667 LALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPN 725

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                              +R   +A+ G  L+ AD + IE 
Sbjct: 726 LQNIPVRT------------------------EEGRKIRKAFVAAPGHVLISADYSQIEL 761

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R+LA I       KAF  G DI+  T ++ F+TPI+ +    R   K +   + Y     
Sbjct: 762 RLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAF 821

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481
           G A          G  ++ + +       + D                         E+ 
Sbjct: 822 GLANQLGISQGEAGAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAK 881

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
               +      A+   + G A +++++A 
Sbjct: 882 SAAHRQFAERAAINAPIQGAAADVMRRAM 910


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 162/513 (31%), Gaps = 93/513 (18%)

Query: 46  DRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           D T+       + L   L D +V+ VA N+ ++  +  +  GI++               
Sbjct: 405 DLTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY-GIEVGPIDDTMLISYVLEA 463

Query: 104 GLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
           GL +   +    L          +    GKA    F    +                   
Sbjct: 464 GLHNHGMDELSKLGLDHEPIAFKSVAGTGKAQ-KSFKYVGLSEATC-------------- 508

Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             Y   D + T  L++ L P              ER +  +   +   G ++D + + +L
Sbjct: 509 --YAAEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQL 566

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
                Q   +L+ +  +L      +      +   LF   G+    ++  T       S 
Sbjct: 567 SNEFGQRMAELEAEAHRLAGRPF-NLGSPKQIGEVLFKEMGLASGRVT-ATGAFSTDASM 624

Query: 270 ITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +  LA     L R+      + KL     + L  A+S   GR+  +     ++ TGR S 
Sbjct: 625 LEDLAAQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSL-ASTTTGRLSS 683

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                 N+P +                              +R   +A  GK L+ AD +
Sbjct: 684 SDPNLMNIPIRT------------------------EEGRKIRRAFVAEPGKVLISADYS 719

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA I       +AF  G DI+  T ++ F  P++ +  E R   K +   + Y 
Sbjct: 720 QIELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYG 779

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY--------- 489
               G A          G  ++ + +       + D  +  +                  
Sbjct: 780 ISAFGLANQLGIPQDEAGAYIKTYFERFPGIRAYMDRTKQAARSQGFVHTIFGRKVNIPA 839

Query: 490 ------------PEFAVKDKLIGTACELVKKAW 510
                          A+   + G+A +++++A 
Sbjct: 840 VKSKSQAERAFGDRAAINAPIQGSAADVMRRAM 872


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/617 (16%), Positives = 197/617 (31%), Gaps = 116/617 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56
           D ET S           Y + A I   ++A                          +   
Sbjct: 295 DTETTSL---------RYMD-AEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQVLDQ 344

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L +  +  V  N  +++ +     GI +       T + +     + +      LA
Sbjct: 345 LKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIA-EDTMLESYVLNSVATRHDMDSLA 402

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           + +    T   E   GK      F +  ++                    Y   D + T 
Sbjct: 403 MYYLGEKTTSFESIAGKGAKQLTFNQIDLEKAA----------------PYAAEDADITL 446

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L P             D +  L  +   +  RG  I    + +  + +A+   +L
Sbjct: 447 RLHQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAEL 506

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS---HSNITQLAKDL 277
           +++  ++      +   T  L+   +   G+ ++   +   +   S    ++ T     +
Sbjct: 507 EKEAHEVAGETF-NLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSPTNTNCRV 565

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + S       +TL E +    GR+  +      + TGR S      QN+P +   
Sbjct: 566 ILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSY-HQAVTATGRLSSSEPNLQNIPIRS-- 622

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G KLV AD + IE R++A ++G+ 
Sbjct: 623 ----------------------EQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSGDK 660

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452
             +KAF  GEDI+  T ++ F   +D VS +QR   K +   L Y   A    +      
Sbjct: 661 GLLKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINFGLIYGMSAFGLSRQLDVER 720

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 + ++ +       + D                       +  + +  +Q     
Sbjct: 721 KLAQEYIDRYFERYPGVLKYMDNIRKQAHDDGFVETLFGRRLYLPEINARNKQLQQAAER 780

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + GTA +++K+A        + +   L +  A   +    +    +  V    +
Sbjct: 781 TAINAPMQGTAADIIKRAM-------VDVENWLLKEHADEARMTMQVHDELILEVKESAL 833

Query: 552 RRHKRDVHIVLPSSRRL 568
            + +  +   + ++  L
Sbjct: 834 DKIRSGLEKRMSAAAEL 850



 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+    A    +        V      + ++   D  +     RRL   ++      L  
Sbjct: 717 DVERKLAQEYIDRYFERYPGVLKYMDNIRKQAHDDGFVETLFGRRLYLPEINARNKQLQQ 776

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSE 635
           A     R            +Q  + DI+   M +          +   + + VHDE++ E
Sbjct: 777 AA---ERTAINAP------MQGTAADIIKRAMVDVENWLLKEHADEARMTMQVHDELILE 827

Query: 636 TPDTPYFSV-GTLCSLMTKN 654
             ++    +   L   M+  
Sbjct: 828 VKESALDKIRSGLEKRMSAA 847


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/580 (17%), Positives = 200/580 (34%), Gaps = 109/580 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58
           +L  D ET S            A +A +   ++A+            DR E   +   L 
Sbjct: 369 QLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLK 418

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLAL 116
              ++E ++ +  N  ++ ++ K     D+  K  +  ++LA     P      +     
Sbjct: 419 PVFQNEKILKIGQNIKYDLLILKNY---DVEVKGKLYDTMLAHYLIEPEGKHSMDWLAEQ 475

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +     + E   LI +  K   +    D  +           EY   D + T +L ++
Sbjct: 476 YLNYQPVSITE---LIGKKGKNQGNMRDVDVDQVT---------EYASEDADITLQLKEK 523

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P            + E  L  +   +   G RID   + ++   + +E K+++  + +
Sbjct: 524 LDPFLKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVYE 583

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +       +     L   LF    +D       T +       +++LA +  + R     
Sbjct: 584 IAGVRFNLA-SPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIARAILDF 642

Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             ++KL     + L   ++   G++  T   + A+ TGR S      QN+P +       
Sbjct: 643 RQMVKLKSTYVDALPTMINSKTGKIHTTYNQFVAA-TGRLSSINPNLQNIPIRTER---- 697

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +       L+ AD + IE R++A  +G++  I
Sbjct: 698 --------------------GREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDESMI 737

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF NG DI+ TT AK F  P+++V+ + R   K     + Y     G ++      +  
Sbjct: 738 EAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANFGIIYGISAFGLSQRLSISRTEA 797

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +   +   + D                          S +  M+      A+
Sbjct: 798 KEIIDAYFKEFPAVKEYMDRAIEKARNDEYVETLLGRRRYLRDINSRNATMRGFAERNAI 857

Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
              + G+A +L+K A    H          + +LQ+  +L
Sbjct: 858 NAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDEL 897


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/559 (16%), Positives = 173/559 (30%), Gaps = 95/559 (16%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           EP++  D   ++   + L   L + +V+ V  N+ ++  +  +  GI +           
Sbjct: 432 EPIQQLD---KAKALAKLKVLLENPSVLKVLQNAKYDLAVMAR-RGIRVAPYDDTMLISY 487

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
               GL     +    L+        +            S  S  +   +          
Sbjct: 488 VLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGK-----SQKSFRHVALKP--------A 534

Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
            +Y   D + T  L++ L P              ER L  +   +   G RID D + +L
Sbjct: 535 TQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDRLKRL 594

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
                    +L+    ++      +      +   LF    +     +    +     S 
Sbjct: 595 SSEFGLRMAELEAQAHEIAGRPF-NIGSPRQIGEILFGELNLPGGKKTASG-QWGTDASV 652

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           +  LA    L R+      + KL     + L+ A      R+  + Q   A+ TGR +  
Sbjct: 653 LEDLAATHALPRVLLDWRQLSKLKGTYTDALTAAADPATDRVHTSYQL-AAATTGRLASS 711

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +  +                           +R   IA+ G  L+ AD + 
Sbjct: 712 DPNLQNIPIRTET------------------------GREIRQAFIAAPGHLLISADYSQ 747

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R+LA I       +AF  G DI+  T ++ F  P++ +  E R   K +   + Y  
Sbjct: 748 IELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIVYGI 807

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------- 485
              G A          G  ++ +        T+ D  +AE                    
Sbjct: 808 SAFGLAAQLGIDQGEAGAYIKTYFDRFPGIRTYMDKTRAEVRQAGFVSTVFGRRIHIPAI 867

Query: 486 -------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGF 528
                  +      A+   + G A +++++A               + +LQ+  +L    
Sbjct: 868 HSKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPTALAEAGLTTRMLLQVHDELVFET 927

Query: 529 ACVVQEGGSISARRVANVP 547
                +      +RV    
Sbjct: 928 PEAEADRAITVIKRVMETA 946


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 108/570 (18%), Positives = 197/570 (34%), Gaps = 89/570 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            K+ ID ET S       L  + +   A +AV     ++    P +L D      +   L
Sbjct: 353 EKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QYVLDRL 408

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             +L +  +  +  N  +++ +F       I     +  ++LA         +GL   L 
Sbjct: 409 KPHLENPALKKIGQNLKYDQHVFANY---GIALNGIVGDAMLASYIIESHLGHGLD-ELS 464

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I         +  Y    A+     +      + D +  
Sbjct: 465 GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHL-RAQMD-DKQ 522

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+++++      E  +  +   +   G +ID   + +    +  E  KL+++       
Sbjct: 523 LEMYEKM------ELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQ 576

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  +   + QLA D  L ++     ++
Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSL 635

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +S  D R+  T      + TGR +G     QN+P +          
Sbjct: 636 AKLKSTYTDKLPEMISPRDKRVHTTYA-QAVAITGRLAGNNPNLQNIPIRT--------- 685

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   I AF 
Sbjct: 686 ---------------EEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 730

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F    + VS EQR   K +   L Y  G    AK            +
Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
            ++       + +    +  +                      +  ++ +    A+   +
Sbjct: 791 DRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNANIRARAERAAINAPM 850

Query: 499 IGTACELVKKAW----RAKHQGVLQLWKDL 524
            GTA +L+K+A     R   +     W DL
Sbjct: 851 QGTASDLIKRAMIDVSRWLSECEASPWDDL 880


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/509 (19%), Positives = 172/509 (33%), Gaps = 72/509 (14%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             +   L     D     VAHN  F+  +  K  G+ I   +   T ++A          
Sbjct: 368 EIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425

Query: 111 NACLA---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCK 164
              L+   L      + T    G+  +            Y    A+   + +  F +  K
Sbjct: 426 MDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNHFLKMLK 485

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D E    L+      S+ E  L ++   +   G +ID   +++    +    K+L+   
Sbjct: 486 DD-EVLYSLY------SNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKELEIKC 538

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L       S     LR  LF   G+  V  +    ++  S   + QLA++  +  L  
Sbjct: 539 YDLAGQEFNLS-SPVQLREILFDKMGLPPVKKTAKG-QASTSEEVLVQLAEEYEIAALIM 596

Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               + KL     + L + +  +GR+  +    G + TGR S      QN+P +      
Sbjct: 597 KYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS----- 650

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA     +V AD + IE R++A ++ +   +
Sbjct: 651 -------------------PEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           KAF  G DI+  T A+     +D V+ EQR   K +   L Y       AK  +      
Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEA 751

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  +     S   +                            S ++  ++     A+
Sbjct: 752 QEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAI 811

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              + GTA +++KKA    +  +LQ + D
Sbjct: 812 NAPMQGTAADIIKKAMIDVNTMILQEYND 840



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            A+   +V        K  +      +++  Y + + G   YL   +S+ + +R    + 
Sbjct: 750 EAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERA 809

Query: 598 TENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLC 648
             N  +Q  + DI+ + M +          +   +V+ VHDE+V E        +   + 
Sbjct: 810 AINAPMQGTAADIIKKAMIDVNTMILQEYNDDIKMVMQVHDELVFEVRKAKLNEITTKIK 869

Query: 649 SLMTK 653
           S+M  
Sbjct: 870 SIMET 874


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 190/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D     
Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 851 GTASDLIKRAM 861


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/568 (17%), Positives = 185/568 (32%), Gaps = 104/568 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ +   P +L    ++  + + L   L D     V  N  ++  +  +    D
Sbjct: 363 AAYVPLAHVYPGAPDQL----DRDRVLARLKPLLEDPGRPKVGQNLKYDMSVLARY---D 415

Query: 88  IPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDS 142
           I  +     T + +      +      LA  F +H T   +   GK      F +  +  
Sbjct: 416 IALRGIAHDTLLESYVLDSTARHDLDSLAKRFLDHDTIRFEDVAGKGAKQIGFDQVPL-- 473

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                         +  G Y   D E T  L +   P             + E  L  + 
Sbjct: 474 --------------EQAGPYAAEDAEVTLRLHRVFQPRLAAVPALERLYREIEMPLVPVL 519

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  ID   +      +A++  +L+E   ++      +      +    F   G+
Sbjct: 520 SRLERAGVLIDSARLATQSAELARKILELEESAYRVAGRRF-NLGSPKQIGAIFFDELGL 578

Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSD-GR 304
            +V  +     S  S   + +LA +   L R+      + KL     + L   V  D GR
Sbjct: 579 PVVAKTPKGAPST-SEDVLERLAAEGHELPRIILDHRGLSKLRSTYTDKLPRMVDRDTGR 637

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 638 VHTSY-HQAVTATGRLSSSDPNLQNIPIRT------------------------EEGRRI 672

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IA++G +L+ AD + IE R++A ++G++  + AFA G+DI+  T A+      + V
Sbjct: 673 RRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQDIHRATAAEILGLAPEDV 732

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           + EQR   K +   L Y       A+            + ++ +       F D  + + 
Sbjct: 733 TGEQRRSAKAINFGLIYGMSAFGLARQLGIERGAAQEYVDRYFERYPGVRDFMDRTRRQV 792

Query: 481 HH-------LWMQDQYPEFA--------------VKDKLIGTACELVKK------AWRAK 513
                       +   PE                +   + GTA +++K+      AW   
Sbjct: 793 REDGYVETLFGRRLHLPEIGHGNQARRAAAERTAINAPMQGTAADIIKRAMIAVDAWIEA 852

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISAR 541
            Q   +L   + +     V E      R
Sbjct: 853 EQPAARLILQVHDELVLEVAESAVEETR 880


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/582 (17%), Positives = 188/582 (32%), Gaps = 116/582 (19%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           D ET S       +  VG+    E+        A+++   P +L    ++ A+ + L   
Sbjct: 334 DTETTSLNYMEAEI--VGLSFAVERGEAAYVPLAHSYPGTPAQL----DRDAVLAALKPL 387

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS-SLKNACLALNF 118
           L D     +  N  ++  +  +    DI  +     T + +              LAL +
Sbjct: 388 LEDPDKAKLGQNLKYDASVLARY---DIAMQGIAFDTMLESYVLDSTGTRHDMDSLALKY 444

Query: 119 ---SEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              S    +   GK      F K  I+                            T  L 
Sbjct: 445 LGRSTTHFEDVAGKGAKQITFDKVGIEEAAAYAAEDAE----------------VTLALH 488

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L P           L+D E  L  +   +   G  +D + + +    + Q  + L+E+
Sbjct: 489 ETLWPKLQETPSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQALEEE 548

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +   +  +      L   LF    + ++  +     S      + +LA D  L +L 
Sbjct: 549 AHNVAGQVF-NLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEE-VLQELALDYPLPKLL 606

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   ++S  GR+  +      + TGR S      QN+P +    
Sbjct: 607 IEHRGLSKLKSTYTDKLPGMINSHTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT--- 662

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA+ G ++V AD + IE R++A ++ +  
Sbjct: 663 ---------------------EEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPG 701

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF    D++  T A+ F  P+D VS EQR   K +   L Y       A+       
Sbjct: 702 LLAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINFGLIYGMSAFGLARQLHLDRG 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEF 492
                +  + +       +    +A +H                         Q      
Sbjct: 762 EAQRYIDVYFERYPGVRQYMVRTRALAHEQGYVETLFGRRLYLPEINVRNKMRQQAAERT 821

Query: 493 AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           A+   + GTA +++K A  A            + ++Q+  +L
Sbjct: 822 AINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDEL 863



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655
           Q  + DI+   M               +++ VHDE+V E  ++    V   LC LM+   
Sbjct: 828 QGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDELVLEVAESQLDPVCDELCRLMSAAA 887

Query: 656 SWAKGLPLKA 665
             A  L ++A
Sbjct: 888 DLAVPLLVEA 897


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 117/617 (18%), Positives = 208/617 (33%), Gaps = 117/617 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQSA 52
               ID ET S   +        AE   I+LC    +                D+   +A
Sbjct: 327 KFFSIDTETNSLNTMK-------AELVGISLC---INPGRACYIPLCHKNSSVDQLSLAA 376

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           +  DL   L D ++  +  N  ++  +F    GI+I       T +++       +    
Sbjct: 377 VLEDLKPILEDSSIKKLGQNLKYDAHIFLNY-GIEINGISD-DTMLMSYVIESNQNHGMD 434

Query: 113 CLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            L+  +  H  K  E   GK +    F + S++                    Y   D +
Sbjct: 435 KLSAKYLGHNCKSYESLVGKGVNQLTFDQVSVEDA----------------VPYAAEDAD 478

Query: 169 ATRELF-----------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L+             L    D E         I   G  ID  ++    ++I ++ 
Sbjct: 479 VTLQLYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKL 538

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L+E    L       S     L+  LF    I  +  +     S  S   +++LA + 
Sbjct: 539 LLLEEKAFDLAGQPFNLS-SPKQLQEILFEKLEIKPLKKTPSGTPST-SEEVLSELALNY 596

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L +L     ++ KL     + L + ++   GR+  +      + TGR +      QN+P
Sbjct: 597 PLPKLILEYRSLAKLKSTYTDKLPKMINESSGRVHTSYN-QAIAITGRLASSDPNLQNIP 655

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                         +    VR   IA +G K++ AD + IE R++A 
Sbjct: 656 IRT------------------------VEGRKVREAFIAPDGSKILSADYSQIELRIMAH 691

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
           ++ +   + AF N EDI+  T  + FN     VS EQR   KV+   L Y  G    AK 
Sbjct: 692 LSKDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGLAKN 751

Query: 448 FKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQY----------------- 489
                +     ++++     S     ED +Q    + +++  +                 
Sbjct: 752 LNIERAAAQNYIERYFSKYPSVREYMEDTKQDARKNGYVETHFGRRLWVPEINGSNGMQR 811

Query: 490 ---PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                 A+   + GTA +L+K A        ++ W D         +    +    V  V
Sbjct: 812 AGAERAAINGPMQGTAADLIKMAMVG-----VKTWLDGQRHLK--GKMIMQVHDELVFEV 864

Query: 547 PRLVMRRHKRDVHIVLP 563
           P   +   K ++  ++ 
Sbjct: 865 PDTEVTEFKENIKRIME 881



 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 19/137 (13%)

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +    A    E        V        +  +++ ++     RRL   ++ G        
Sbjct: 754 IERAAAQNYIERYFSKYPSVREYMEDTKQDARKNGYVETHFGRRLWVPEINGSN---GMQ 810

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSE 635
            +   R    G       +Q  + D++   M              G  +++ VHDE+V E
Sbjct: 811 RAGAERAAINGP------MQGTAADLIKMAMVGVKTWLDGQRHLKG-KMIMQVHDELVFE 863

Query: 636 TPDTPYFSVGT-LCSLM 651
            PDT        +  +M
Sbjct: 864 VPDTEVTEFKENIKRIM 880


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 153/416 (36%), Gaps = 68/416 (16%)

Query: 167  VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            VEA            + E  L  +   + + G  +D   + +L  L  +  ++L E I +
Sbjct: 641  VEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQELAEQIYQ 700

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
            L      +   T  L   LF   G+ +V  ++           +  LA    +  L    
Sbjct: 701  LAGETF-NINSTQQLGQILFERLGLPVVKKTK--TGYSTDAEVLETLAARHPIAELVLEY 757

Query: 287  SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +++KL     + L+E +  DGR+  T Q   A+ TGR S      QN+P ++       
Sbjct: 758  RSLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQPNLQNIPIRDEP----- 811

Query: 342  QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  +R   +A  G +LV AD + IE RVLA  +G++  ++A
Sbjct: 812  -------------------GRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEGLLEA 852

Query: 402  FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
            FA G+D++  T ++ F  P+++V+ EQR + K +   L Y     G A+  +   +    
Sbjct: 853  FARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDYGLARALRIDRADARR 912

Query: 458  DLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKD 496
             + ++ +       + +     +                         ++      A+  
Sbjct: 913  FMDRYFERYPGVKRYMEETIRRARQHGEVTTLLGRRRPVPEIRHRVYHIRQNAERVAINT 972

Query: 497  KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
             + GTA +++K A    ++           VLQ+  +L            +   RR
Sbjct: 973  PIQGTAADIMKLAMIRVYRALAGEGLRARIVLQVHDELLVEAPEDEVPAVAALLRR 1028


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/594 (16%), Positives = 185/594 (31%), Gaps = 119/594 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MPSD 56
           D ET S  P+          QA I   ++A              +           + + 
Sbjct: 360 DTETDSLDPM----------QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLAQ 409

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115
           L  +L +     V  N+ ++R +     GI +       T ++              +A 
Sbjct: 410 LKPWLENPAAAKVLQNANYDRHVLANH-GIRLAGVAD-DTMLMDYVLASHERHNMDAMAE 467

Query: 116 --LNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             L  +    +   GK      F +  +D+                   Y   D + T  
Sbjct: 468 RELGLATIKYEDICGKGARQIGFAEVDLDTATR----------------YAAEDADVTLR 511

Query: 173 LFKRL---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L   L            S  E     +   +   G  ID   + +  +++ +E   ++ +
Sbjct: 512 LRDVLAGKLDGARDTLYSSIELPTAAVLFAMERTGVLIDRAELARQSQVLGEEMLAIETE 571

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRL 282
           + +L      +      L   LF    ID   + +  +       S + +LA+D  L + 
Sbjct: 572 VYELAGQPF-NLNSPKQLSDILFNKLAIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKA 630

Query: 283 ASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L   ++ D GR+           TGR +      QN+P +   
Sbjct: 631 LLRYRGLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVV-TGRLASSDPNLQNIPIRT-- 687

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G  +V AD + IE R++A ++G+ 
Sbjct: 688 ----------------------DEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDA 725

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             I AF  G DI+  T ++ F  P++ VS EQR   K +   L Y       AK  +   
Sbjct: 726 GLIAAFREGRDIHRATASEVFGVPLEAVSAEQRRYAKTINFGLIYGMSAFGLAKSLEIDN 785

Query: 453 SHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQYPE-------------------- 491
                 ++++           +   +A     W++  +                      
Sbjct: 786 KAAQTFIERYFARYPGVQDYMQRTREAAREQGWVETVFGRRLYLPEIRSSNAARRAGAER 845

Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
            A+   + GTA +L+K A               + ++Q+  +L        +E 
Sbjct: 846 AAINAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERER 899



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655
           Q  + D++   M          +    +++ VHDE+V E P+     V   L   M    
Sbjct: 853 QGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERERVCAALPQEMAAV- 911

Query: 656 SWAKGL--PLKAE 666
               GL  PL AE
Sbjct: 912 ---AGLAVPLVAE 921


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|294840299|ref|ZP_06784982.1| DNA polymerase I [Acinetobacter sp. 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
          Length = 923

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QVLAQIKPILENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 159/509 (31%), Gaps = 87/509 (17%)

Query: 48  TEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +   +P     + L   L D  V+ VA N+ ++  +  +  GI +              
Sbjct: 428 ADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLE 486

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
            GL     +    L+        ++    +A   KG I         A           Y
Sbjct: 487 AGLHGHGMDELSELHLGHKPIPFKQ----VAGSGKGQISFKHVALPEATA---------Y 533

Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              D + T  L+  L P              ER +  +   + + G R+D + +  L   
Sbjct: 534 AAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNE 593

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            +    + +    +L      +      +   LF    +     +  T +       +  
Sbjct: 594 FSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKT-ATGQWSTDSDVLES 651

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
           LA +  L R+      + KL       L  A++   GR+  +     A+ TGR S     
Sbjct: 652 LALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPN 710

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                              +R   +A+ G  L+ AD + IE 
Sbjct: 711 LQNIPVRT------------------------EEGRKIRKAFVAAPGHVLISADYSQIEL 746

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R+LA I       KAF  G DI+  T ++ F+TPI+ +    R   K +   + Y     
Sbjct: 747 RLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAF 806

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481
           G A          G  ++ + +       + D                         E+ 
Sbjct: 807 GLANQLGISQGEAGAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAK 866

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
               +      A+   + G A +++++A 
Sbjct: 867 SAAHRQFAERAAINAPIQGAAADVMRRAM 895


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/577 (18%), Positives = 189/577 (32%), Gaps = 104/577 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S   +    VG+    +   A      ++  D P +L        + + L  +
Sbjct: 363 ALDTETDSLDEMRAQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPI----GQVLARLKPW 418

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D     +  +  ++R +F    GI++       T + +    +        LA     
Sbjct: 419 LEDGRRHKLGQHIKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHNLGSLAER--- 473

Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  G+  I+    C       P+     +   A+         D + T  + + L 
Sbjct: 474 -----HTGRKGISYEDLCGKGAHQLPFAQVPVDKAAAYS------CEDADLTLNVHQTLW 522

Query: 179 PLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P     D  R ++ L+         I   G  ID   + +    + Q  ++L  D   L 
Sbjct: 523 PQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQLQADAYALA 582

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S     L    F   G+ +V  +  T         + +LA++  L         
Sbjct: 583 GQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAENYPLPAKLLEHRG 640

Query: 289 ILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++KL     + L++ A+   GR+         + TGR S      QN+P +         
Sbjct: 641 LIKLKGTYTDKLTQLALPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-------- 691

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR   +A  G  +  AD + IE R++A ++ +   + AF
Sbjct: 692 ----------------PEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDDQALLHAF 735

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
             G D++  T A+ F   +D+VS EQR   KV+   L Y  G    AK            
Sbjct: 736 HAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMGSFGLAKNLGLENKAAAAY 795

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           + ++ Q       + D  +A +      +                          A+   
Sbjct: 796 IDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGRRLYLPEINSPNGPRRSGAERSAINAP 855

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           + GTA +L+K A  A            + ++Q+  +L
Sbjct: 856 MQGTAADLIKMAMVAVQKELDAQQPAIRMIMQVHDEL 892


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L     + 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQL----NRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|294839290|ref|ZP_06783973.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013113]
 gi|294858990|ref|ZP_06796759.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013150]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
          Length = 923

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L     + 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQL----NRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/582 (16%), Positives = 184/582 (31%), Gaps = 96/582 (16%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S  P+    VG+   AE  +A      + +   P +L            L   
Sbjct: 352 ALDTETDSLDPMRARLVGLSFAAEPGRAAYLPLGHDYPGAPAQLG----YEQALDLLRPL 407

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D  V  +  +  ++  + ++                    +G      ++    +   
Sbjct: 408 LADPAVRKIGQHGKYDLHVLRRHGVAVAGYADDTLLESFVLDSGNARHDMDSLALRHLGY 467

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K E+        C   +   P+     +    +         D + T  L + L   
Sbjct: 468 TTVKYEDI-------CGKGVRQIPFSQCALDDATRY------AAEDADITLRLHRVLSAR 514

Query: 181 S-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       D E  L  + + I   G  +D+D + +    +++   +  E    L  
Sbjct: 515 LQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRMLEAQERATALAG 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF    +  +  +     S    + +  +A    L R+      +
Sbjct: 575 RSF-NLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEA-LEAIADLHELPRIILEYRGL 632

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E V+   GR+  +    GA+ TGR S      QN+P +          
Sbjct: 633 AKLRSTYTDKLPEMVNPETGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTDD------- 684

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G+KLV  D + IE R++A ++ +   + AFA
Sbjct: 685 -----------------GRRIRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPGLLGAFA 727

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           +G DI+  T A+ F  P+++V+  +R   K +   L Y  G    A+            +
Sbjct: 728 SGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGAFGLARQLGIDRGQAQDYI 787

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498
             +         + +  + ++      +                          A+   +
Sbjct: 788 ALYFSRYPGVRDYMERTREQARERGYVETVFGRRLHLEYINARNAAQRAGAERAAINAPM 847

Query: 499 IGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534
            GTA +++K+      AW A H    ++   + +       E
Sbjct: 848 QGTAADIIKRAMIAVDAWIADHAQRARMLLQVHDELVFEADE 889


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/581 (18%), Positives = 192/581 (33%), Gaps = 101/581 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            +D ET S   L    VG+    +         A  +   +L     +  +   +  +L 
Sbjct: 371 AVDTETTSLDALAAELVGISLSVKPGEACYIPVAHRNGEAQL----SRELVLKRMKSWLE 426

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
             + + V  N  ++  +F      DI  +     ++L        LP ++ +     +  
Sbjct: 427 SSSHLKVGQNLKYDIHIFANY---DIHLEGIAFDTLLESYVLESHLPHNMDSLAE-RHLG 482

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               + EE        C   +    +D          Q+   Y   D + T  L   L P
Sbjct: 483 LKTIRYEEV-------CGKGVHQIGFD------QVDLQIATNYAAEDADITLRLHLELWP 529

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                          E    L+   +   G RID  L+ K  + + +   +L+ +I +L 
Sbjct: 530 QIQASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIHRLA 589

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                + +    +   LF    + +V  +     S      + +LA+D  L        +
Sbjct: 590 GQPF-NIQSPKQIAEILFGQLELPIVKKTPSGAPST-DEEVLQKLAEDYPLPARILDYRS 647

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL       L        GR+        A  TGR +      QN+P +         
Sbjct: 648 LAKLMSTYIEKLPRMADPKTGRIHTNFSQATAV-TGRLASSDPNLQNIPVRT-------- 698

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   I ++G KL+ AD + IE R++A IA ++  + AF
Sbjct: 699 ----------------EEGRRIREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLTAF 742

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
             G+D++  T A+ F  P+D V+ EQR   KV+   L Y       A       +     
Sbjct: 743 KEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQNY 802

Query: 459 LQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDK 497
           + ++       + + +  + E+             LW+          +      A+   
Sbjct: 803 IAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWLPEIKGSNGPRRQGAERAAINAP 862

Query: 498 LIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVV 532
           + GTA +L+K A      W  K Q   ++   + +     V
Sbjct: 863 MQGTAADLIKLAMIAVEDWLEKEQLKTKMLLQVHDELVFDV 903


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 109/594 (18%), Positives = 202/594 (34%), Gaps = 94/594 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           + + ID ET S       L  + +   A +AV     ++    P +L D      +   L
Sbjct: 352 NTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRL 407

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             +L +  +  +  N  +++ +F       I        ++LA         +GL   L 
Sbjct: 408 KPHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 463

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I         +  Y    A+     +      + D E  
Sbjct: 464 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 521

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+++++      E  +  +   +   G +ID   + +    +  E  KL++      D 
Sbjct: 522 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQ 575

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++
Sbjct: 576 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 634

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +S  DGR+  T      + TGR +      QN+P +          
Sbjct: 635 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 684

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   I AF 
Sbjct: 685 ---------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 729

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F T  + VS EQR   K +   L Y  G    AK            +
Sbjct: 730 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 789

Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498
            ++       + +    + ++                      +   +      A+   +
Sbjct: 790 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 849

Query: 499 IGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 850 QGTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/590 (15%), Positives = 186/590 (31%), Gaps = 110/590 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59
           L +D ET    P+           A +   +++  +         +       + ++   
Sbjct: 353 LSLDTETTGTDPI----------SAKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFKS 402

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116
              DE ++ +  N  ++ ++ +   GI +  +  I  +++A     P     +       
Sbjct: 403 VYEDERILKIGQNIKYDLMVLQNY-GITLKGE--IFDTMIAHYLLQPELRHGMDYLAEV- 458

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +     +EE      +  K   D PP                EY   D + T +L   
Sbjct: 459 YLNYQTIHIEELIGPKGKNQKNMADLPPSQV------------YEYACEDADITLKLKNV 506

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             P            + E  L  +   +   G  ID + + +   L  +E   L+E+I  
Sbjct: 507 FEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEIHA 566

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L       +     +   LF    I        T + + S   +  L     +       
Sbjct: 567 LAGEPFNIA-SPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEH 625

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + ++   G +  +      + TGR S      QN+P         
Sbjct: 626 RGLKKLLGTYIDALPKLINPETGHIHTSFN-QTITTTGRLSSSNPNLQNIP--------- 675

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   I   G +   AD + IE R++A ++G+   I+
Sbjct: 676 ---------------VRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T AK +  P+++V++E+R+  K     + Y     G A+      +   
Sbjct: 721 AFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSRAEAK 780

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             +  +         +                            SH+  ++      A+ 
Sbjct: 781 ELIDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAERNAIN 840

Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
             + G+A +++K A  A          + + +LQ+  +L        +E 
Sbjct: 841 APIQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDELNFSVYPEEKER 890


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/599 (17%), Positives = 195/599 (32%), Gaps = 117/599 (19%)

Query: 5   FIDIETRSPQ--PLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMP-----S 55
            ID ET S        VG+    E   A     A+             +   +P      
Sbjct: 340 AIDTETTSLDVMNAKLVGISLSIEPGHAAYIPLAHHS---------MEQSEQLPLQSVLD 390

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L  +L +     V  N  ++  +     GI +       T + +             L+
Sbjct: 391 KLKPWLENPKKHKVGQNLKYDSHVLANY-GIRLQGI-VHDTLLESYVLESHRRHDMDSLS 448

Query: 116 LNFSEHL-----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             F ++          +G + I  F + +ID   +                Y   D + T
Sbjct: 449 ERFLDYKPVSYTDICGKGASQIG-FDEIAIDVATH----------------YAAEDADVT 491

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + + P               E    ++ Q +   G  ID+D +      +  +   
Sbjct: 492 LQLHQSMWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDS 551

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L E+   +T G   +      L   LF    + ++  +     S  S   + +LA+D  L
Sbjct: 552 LQENAY-VTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPST-SEEVLEKLAEDFPL 609

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++      + KL     + L   V+   GR+         + TGR +      QN+P +
Sbjct: 610 PKIILDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYA-QAVAVTGRLASNDPNLQNIPIR 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IAS G K++ AD + IE R++A ++
Sbjct: 669 S------------------------EEGRRIREAFIASPGNKIISADYSQIELRIMAHLS 704

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   +KAF +G+D++  T ++ F+    +V+ +QR   KV+   L Y       A    
Sbjct: 705 DDASLLKAFHDGQDVHRATASEIFDITPLEVTSDQRRYAKVINFGLIYGMSAFGVASNLG 764

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQ 488
              +     + ++ +     + + D            E      LW+          +  
Sbjct: 765 ISRTDAKNYIDRYFERYPGVARYMDETRQLAREQGYVETVFGRRLWLPEINSPNGPRRQA 824

Query: 489 YPEFAVKDKLIGTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
               A+   + GTA +++K      + W  K +   +L   + +     V E   +  R
Sbjct: 825 AERAAINAPMQGTAADIIKLSMIAVQDWLEKEKLDSKLIMQVHDELVLDVPEKELVLVR 883



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + DI+   M          K    +++ VHDE+V + P+     V   L  LM + 
Sbjct: 835 QGTAADIIKLSMIAVQDWLEKEKLDSKLIMQVHDELVLDVPEKELVLVREKLPELMAQV 893


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 106/593 (17%), Positives = 198/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + +S  D R+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPDMISPQDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
           ++       + +                            + +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRAKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRAK---------HQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVRNWLSDGIDSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/594 (18%), Positives = 202/594 (34%), Gaps = 94/594 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           + + ID ET S       L  + +   A +AV     ++    P +L D      +   L
Sbjct: 330 NTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRL 385

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             +L +  +  +  N  +++ +F       I        ++LA         +GL   L 
Sbjct: 386 KPHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 441

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I         +  Y    A+     +      + D E  
Sbjct: 442 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 499

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+++++      E  +  +   +   G +ID   + +    +  E  KL++      D 
Sbjct: 500 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQ 553

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++
Sbjct: 554 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 612

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +S  DGR+  T      + TGR +      QN+P +          
Sbjct: 613 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 662

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   I AF 
Sbjct: 663 ---------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 707

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F T  + VS EQR   K +   L Y  G    AK            +
Sbjct: 708 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 767

Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498
            ++       + +    + ++                      +   +      A+   +
Sbjct: 768 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 827

Query: 499 IGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 828 QGTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 881


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 107/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F      DI        S+LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D     
Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  L    GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSIIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGIAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A            K + ++Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVSRWLSYDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQI 903


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL++      D  
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 106/595 (17%), Positives = 202/595 (33%), Gaps = 95/595 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            K+ ID ET S   +    V       A +AV     ++    P +L D      +   L
Sbjct: 353 EKIGIDTETTSLDAMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QYVLDRL 408

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             +L +  +  +  N  +++ +F       I     +  ++LA         +GL   L 
Sbjct: 409 KPHLENPALKKIGQNLKYDQHVFANC---GIALNGIVGDAMLASYIIESHLGHGLD-ELS 464

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I         +  Y    A+     +      + D +  
Sbjct: 465 GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHL-RAQMD-DKQ 522

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+++++      E  +  +   +   G +ID   + +    +  E  KL+++       
Sbjct: 523 LEMYEKM------ELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQ 576

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  +   + QLA D  L ++     ++
Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSL 635

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +S  D R+  T      + TGR +G     QN+P +          
Sbjct: 636 AKLKSTYTDKLPEMISPRDKRVHTTYA-QAVAITGRLAGNNPNLQNIPIRT--------- 685

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   I AF 
Sbjct: 686 ---------------EEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 730

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F    + VS EQR   K +   L Y  G    AK            +
Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
            ++       + +    +  +                      +  ++ +    A+   +
Sbjct: 791 DRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLSDIRHTNANIRARAERAAINAPM 850

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            GTA +L+K+A             + + ++Q+  +L         +       ++
Sbjct: 851 QGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQM 905


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 146/383 (38%), Gaps = 58/383 (15%)

Query: 167  VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            VEA            + E  L  +   + + G  +D   + +L  L  +  ++L E I +
Sbjct: 653  VEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQELAEQIYE 712

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
            L      +   T  L   LF   G+ +V  ++           +  LA    +  L    
Sbjct: 713  LAGQTF-NINSTQQLGQILFERLGLPVVKKTKTG--YSTDAEVLETLAARHPIAELVLEY 769

Query: 287  SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +++KL     + L+E +  DGR+  T Q   A+ TGR S      QN+P ++       
Sbjct: 770  RSLVKLQGTYVDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNLQNIPIRDEP----- 823

Query: 342  QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  +R   +A  G +LV AD + IE RVLA  +G+   ++A
Sbjct: 824  -------------------GRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGLVEA 864

Query: 402  FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
            FA G+D++  T ++ F  P+++V+ EQR + K +   L Y     G A+  +   +    
Sbjct: 865  FAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDFGLARALRIDRADARR 924

Query: 458  DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496
             ++++ +       + +     +                         ++      A+  
Sbjct: 925  FMERYFERYPGVKRYMEETVRRARQQGEVTTLLGRRRPVPEIRHRVFHIRQNAERVAINT 984

Query: 497  KLIGTACELVKKAWRAKHQGVLQ 519
             + GTA +++K A    H+ + +
Sbjct: 985  PIQGTAADIMKLAMIRVHRALAE 1007


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 180/495 (36%), Gaps = 77/495 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L   L D +V+ +  N  ++ ++ K+    DI    +  T +L+        +     L+
Sbjct: 443 LKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAFDAGILTHNMDDLS 499

Query: 116 LNFSEHL----TKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEA 169
             + +H       +      I  F +  +     Y   RA+  ++ WQ+           
Sbjct: 500 ERWLKHKPISYKDLTHNGKKITSFAQVDLKQATLYAAERADITLRLWQVLKPQLV--ARG 557

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             ++++RL      +R L  +   + +RG  ID  ++L+L   +AQ    L+E+I K  D
Sbjct: 558 MTKIYERL------DRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQAD 611

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288
                +     L   LF   G+     ++G  +   S   + +LA +  +L R       
Sbjct: 612 EKFNLA-SPKQLGDILFGKMGLSGGAKTKGG-QWSTSAQTLEELAAEGHVLPRKIIEWRQ 669

Query: 289 ILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   + S  GR+         + TGR S      QN+P +         
Sbjct: 670 LAKLKSTYTDALPSYIFSKTGRVHTNYSL-AITSTGRLSSSEPNLQNIPVRT-------- 720

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA  G  L+ AD + IE R+LA IA      +AF
Sbjct: 721 ----------------AEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAF 764

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
           A G DI+  T ++ F   I+ +  + R   K +   + Y     G A          G  
Sbjct: 765 AKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEAGRY 824

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           +Q + +       + +                     + + ++ ++ ++      A+   
Sbjct: 825 IQLYFERFPGIKDYMEKTKIFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAINAP 884

Query: 498 LIGTACELVKKAWRA 512
           + G+A +++++A   
Sbjct: 885 IQGSAADIIRRAMIQ 899


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 111/586 (18%), Positives = 195/586 (33%), Gaps = 107/586 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
            ID ET S  P+    +G+ ++A Q          + +   P +L        + + L  
Sbjct: 360 AIDTETDSLDPMRARIIGI-SFAVQPLEAAYVPVGHDYPGAPDQLP----LDEVLARLRP 414

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           +L D     V  N  ++  +F    G+ +       T + +           A LA    
Sbjct: 415 WLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYA-HDTMLESYVLEAHKPHGLASLA---D 469

Query: 120 EHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            HL     G++ I     C       P+     +    +         D E T ++ + L
Sbjct: 470 RHL-----GRSGINYEDLCGKGAGQIPFSHVAVDQASTYS------GEDSEMTLQVHQTL 518

Query: 178 IPLSDGE---RDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            P  + E   R+L+         +   I   G  ID  ++ +    +AQ    L+++   
Sbjct: 519 WPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHTLEQEAHA 578

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +      +      +   LF   G+ +   +     S      + +LA D  L       
Sbjct: 579 IAGQPF-NMSSPKQIGEILFTKLGLPVKKKTASGAPST-DEEVLQELAADYPLPARILEH 636

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            ++ KL     + L   V+   GR+         + TGR S      QN+P +       
Sbjct: 637 RSLAKLKGTYTDKLPLMVNPSTGRVHTNYA-QAVAITGRLSSNDPNLQNIPIRT------ 689

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR   +A+ G KLV AD + IE R++A I+G+   +K
Sbjct: 690 ------------------AEGRRVREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLK 731

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AFA+G D++  T A+ FN     V+ EQR   K +   L Y  G    A           
Sbjct: 732 AFADGMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMGAFGLAASLGIEQKAAR 791

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVK 495
             ++++         + D  +A +  L   +                          A+ 
Sbjct: 792 DYIERYFARYPDVKRYMDETKAGAAQLGHVETLFGRRIVLPEIKGGNGPRKAAAERQAIN 851

Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531
             + GTA +L+K A  A            + ++Q+  +L       
Sbjct: 852 APMQGTAADLIKLAMIAVQKAIDDEGRASKMIMQVHDELVLEVPEA 897


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 105/581 (18%), Positives = 190/581 (32%), Gaps = 114/581 (19%)

Query: 7   DIETRSPQ--PLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S        VGV    E  +A     A+ +   P +L     +  + + L   L 
Sbjct: 335 DTETTSLNYMDAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQL----SREHVLARLKPLLE 390

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS------LKNACLA 115
           ++ +  V  N  ++  +       DI  K     T + +  +    S      L    L 
Sbjct: 391 NDGLKKVGQNLKYDANVLANY---DIALKGIAYDTMLESYVHNSTGSRHDMDTLAELHLG 447

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                      +G   +  F +                   +  G Y   D + T  L +
Sbjct: 448 HKTIHFEDIAGKGAKQLT-FNQI----------------KLEEAGPYAAEDADITLRLHQ 490

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P            +D E  L  +   I   G  +D  L+ +L         KL+++ 
Sbjct: 491 ALWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTKLLGELSLQHGASIVKLEKEA 550

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      L   LF    + +V  +     S  +   + +LA D  L  +  
Sbjct: 551 YELAGEEF-NLGSPKQLATILFEKMNLPVVKKTAKGAPST-NEEVMQELALDYPLPSVIL 608

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L   V+   GR+  +      + TGR S      QN+P +     
Sbjct: 609 QHRSLSKLKSTYTDKLPTMVNKKTGRVHTSY-HQAVAATGRLSSSDPNLQNIPIKT---- 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G K+V AD + IE R++A ++ +   
Sbjct: 664 --------------------DEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGL 703

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
            KAFA G D++ +T A+ F T ++ VS EQR   K +   L Y       A+  +   + 
Sbjct: 704 QKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMSAFGLARQLRIGRND 763

Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493
               +  + +     + +                         +  S +   +      A
Sbjct: 764 AQTYIDTYFERYPGVAEYMANIRKSAAEKGYVETLLGRRLYLPEINSSNGMRRQAAERVA 823

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +   + GTA +++K+A               + ++Q+  +L
Sbjct: 824 INAPMQGTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDEL 864



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMT 652
           Q  + DI+   M          +    I++ VHDE+V E            LC +M+
Sbjct: 829 QGTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDELVLEVAAADAEAISAKLCDIMS 885


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 102/599 (17%), Positives = 195/599 (32%), Gaps = 106/599 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDL---- 57
            + ID ET S            A  A +   + A+                +P  L    
Sbjct: 353 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQD 402

Query: 58  -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGL 105
                  +L +  +  +  N  +++ +F       I        ++LA         +GL
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY---GIALNNIAGDAMLASYIIESHLGHGL 459

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
              L    L L    + +   +G   I+        +  Y    A+     +      + 
Sbjct: 460 D-ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEA-RLRAQM 517

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D +   E+++++      E  +  +   +   G +ID   + +    +  E  KL+++  
Sbjct: 518 D-DKQLEMYEKM------ELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAY 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLAS 284
                   +      L+  LF   GI    + +     I  + + + QLA D  L ++  
Sbjct: 571 AAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIIL 629

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L E +S  D R+  T      + TGR +      QN+P +     
Sbjct: 630 QNRSLAKLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---- 684

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR    A  G  +V AD + IE R++A ++G+   
Sbjct: 685 --------------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTL 724

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           I AF +GED++  T A+ F T  + VS EQR   K +   L Y  G    AK        
Sbjct: 725 IAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLS 784

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493
               + ++       + +    + ++                      +   +      A
Sbjct: 785 AKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAA 844

Query: 494 VKDKLIGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 845 INAPMQGTASDLIKRAMINVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 95/557 (17%), Positives = 188/557 (33%), Gaps = 111/557 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---- 83
           A     A+ + D P +L    ++ ++ +     L D+    V  +  +++ +        
Sbjct: 379 AAYLPLAHDYADAPEQL----DRDSVLALFKPLLEDKNKAKVGQHLKYDKNVLANYDINL 434

Query: 84  --LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSI 140
             +  D   + ++  SV A  + + S    A   L  S    +   GK      F +  +
Sbjct: 435 QGIAYDTMLESYVLDSV-ATRHDMDS---LAQHYLGLSTVHFEDIAGKGAKQLTFNQIPL 490

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189
           +   +                Y   D + T  L   +             LS+ E  L  
Sbjct: 491 EQAAH----------------YAAEDADITLRLHNHIWKKLNQSPELASVLSEIEVPLAT 534

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G  ID   + +  + +A    +L+ ++  L      +   T  L+  LF   
Sbjct: 535 VLAKMEQFGVLIDSQKLGQQSQDLASRILQLENEVHILAGEEF-NLGSTKQLQEILFKKL 593

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303
            + ++  +     S  S   + +LA    L +L      + KL     + L + ++   G
Sbjct: 594 DLPVLKKTPKGAPST-SEEVLQELALTYPLPKLLMEFRVLSKLKNTYTDKLPKMINQRSG 652

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P +                              
Sbjct: 653 RVHTSY-HQAITATGRLSSTEPNLQNIPIRT------------------------EQGRR 687

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR   I   G K+V AD + IE R++A ++ +   +KAF+ G+DI+  T A+ FN  +++
Sbjct: 688 VRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVFNVSLEE 747

Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           V+ EQR   K +   L Y   A    K            +  + +       + +     
Sbjct: 748 VTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRQDAQHYMDLYFERYPGVLKYMEDARVV 807

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------- 510
                                + +   +      A+   + GTA +++KKA         
Sbjct: 808 AKEKGYVSTVFGRRLYLPDINASNGLRRKGAERAAINAPMQGTAADIIKKAMLKVDAWID 867

Query: 511 ---RAKHQGVLQLWKDL 524
                + + ++Q+  +L
Sbjct: 868 TLPNDQTRMIMQVHDEL 884



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           Q  + DI+ + M            +   +++ VHDE++ E  +    S   T+  LM K 
Sbjct: 848 QGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNTIVDLMEKA 907


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/593 (17%), Positives = 201/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNNIAGDAMLASYIIESHLGHGLD-ELSG 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D +   
Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEA-RLRAQMD-DKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  D R+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF +
Sbjct: 685 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQS 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 851 GTASDLIKRAMINVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 107/551 (19%), Positives = 193/551 (35%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           K+ ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F      DI        S+LA         +GL   L  
Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+      + +  Y    A+     +        D     
Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIVQATEYAAQDADFALRLEAHLRAQMDD--KQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLSIDNISAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 851 GTASDLIKRAM 861


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 331 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 386

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 387 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 442

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 443 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 500

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 501 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 555 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 613

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 614 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 662

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 663 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 708

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 709 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 768

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 769 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 828

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 829 GTASDLIKRAM 839


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 100/597 (16%), Positives = 184/597 (30%), Gaps = 99/597 (16%)

Query: 2   SKLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             +  D ET S  P+    VGV    E   A      + +   P +L       A  + L
Sbjct: 351 KVVSFDTETTSLDPMQARIVGVSFSVEAGHAAYLPLEHHYAGAPQQLP----LEAALAKL 406

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             +L D +      N  ++  +     GI +       + + +             LA  
Sbjct: 407 KPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIAD-DSMLASYVLESHQRHNMDDLARR 464

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-- 175
                  + E        C        +     +      +   Y   D + T  L +  
Sbjct: 465 ------HLGENTVSYEEICGKGAKQIGFSEVDVD------IAANYAAEDADITLRLNQFF 512

Query: 176 --RLI-----PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             +L         D E  +  +   +   G  ID D +      +  +  +L++   +L 
Sbjct: 513 AGQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLELEQRAYELA 572

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG-TLKSILSHSNITQLAKDLILNRLASSGS 287
                +      L+  LF    I    + +  +       S + QLA D  L +      
Sbjct: 573 GQPF-NLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHPLPKCILEYR 631

Query: 288 AILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   +    GR+  T      + TGR +      QN+P +        
Sbjct: 632 GLAKLKSTYTDKLPTLIYPQTGRVHTTYA-QAVAITGRLASNDPNLQNIPVRT------- 683

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 VR   IA  G ++V AD + IE R++A ++ ++  +KA
Sbjct: 684 -----------------AEGRRVREAFIAPAGWQIVSADYSQIELRIMAHLSDDEGMLKA 726

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA+GEDI+  T A+ F   +  V+ +QR   K +   L Y       A       S    
Sbjct: 727 FASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLIYGMSAFGLAAQLDIERSAAQQ 786

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKD 496
            + ++       + +    + ++      +                          A+  
Sbjct: 787 YIDRYFMRYPGVAEYMQATREKAREQGYVETVFGRRLYLPDIKLSNPGRRAGAERAAINA 846

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            + GTA +L+K A  A          + + ++Q+  +L         E        +
Sbjct: 847 PMQGTAADLIKLAMIAVQDWLERDGLQSKLIMQVHDELVLEVPQAELEQVKRRLPEI 903


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 99/541 (18%), Positives = 177/541 (32%), Gaps = 91/541 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +     DE +  +  N  F+ ++ ++ LGI I   R   T +L       S      LA 
Sbjct: 434 VRPLFEDEKIAKIGQNIKFDLMVLRR-LGITIR-GRMYDTMILHYLLDPESRHNMNALAE 491

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  +  K  E + LI +  K               +   +   EY   D + T +L + 
Sbjct: 492 KYLNY--KPIEIETLIGKGSKQ----------LTMDLVNVERVKEYAAEDADVTLQLKQA 539

Query: 177 LIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P+ +           E  +  +   I   G RID + +      + ++  +L+  I  
Sbjct: 540 LYPMIEQIGLQHLYFEIEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRT 599

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF    I        T +       +   A+   +  L    
Sbjct: 600 EAGEPNLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDLILEY 659

Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL       L + V+ S GR+  +      + TGR S      QN+P         
Sbjct: 660 RGVKKLLSTYVEALPQLVNRSTGRIHTSFN-QAVTATGRLSSTNPNLQNIP--------- 709

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   I S+    L+ AD + +E R++A ++G++  I
Sbjct: 710 ---------------VRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLI 754

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +GEDI+  T AK FN  +D+V+ E+R   K     + Y     G ++  +      
Sbjct: 755 AAFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIPRKEA 814

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  +  +      + D                          SH+   +      AV
Sbjct: 815 KEIIDGYFASYPGVKKYMDNVVEKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAERNAV 874

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVA 544
              + G+A +++K A    H+           +LQ+  +L        QE  +       
Sbjct: 875 NAPIQGSAADIMKIAMINVHRRFAAEGIRSRVILQVHDELVVDMLRSEQERVTAIVTECM 934

Query: 545 N 545
            
Sbjct: 935 E 935


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/593 (17%), Positives = 201/593 (33%), Gaps = 94/593 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 331 TIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 386

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 387 PHLENPALKKIGQNLKYDQHVFANY---GIALNNIAGDAMLASYIIESHLGHGLD-ELSG 442

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D +   
Sbjct: 443 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEA-RLRAQMD-DKQL 500

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 501 EMYEKM------ELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 555 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 613

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  D R+  T      + TGR +      QN+P +           
Sbjct: 614 KLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 662

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF +
Sbjct: 663 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQS 708

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 709 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 768

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 769 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 828

Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           GTA +L+K+A              + V+Q+  +L         +       ++
Sbjct: 829 GTASDLIKRAMINVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 881


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 108/579 (18%), Positives = 197/579 (34%), Gaps = 89/579 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D     
Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  D R+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAW----RAKHQGVLQLWKDLTEGFACVVQE 534
           GTA +L+K+A     R   +    LW  L       V +
Sbjct: 851 GTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHD 889


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 84/495 (16%), Positives = 156/495 (31%), Gaps = 82/495 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D  V+ VA N+ ++  +  +  GI +               GL     +    L
Sbjct: 441 LKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVSPIEDTMLISYVLEAGLHGHGMDELSEL 499

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                    ++         K  I       + A           Y   D + T  L++ 
Sbjct: 500 WLGHKPIPFKQVAGT----GKAQISFKHVALSEATA---------YAAEDADVTLRLYET 546

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              ER +  +   + + G ++D + + +L    +    + +    +
Sbjct: 547 LKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSNEFSLRMAEFEARATE 606

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      +   LF    I     +  T +       +  LA +  L R+    
Sbjct: 607 LVGRPF-NLGSPKQIGDVLFGEMQIKGGKKT-ATGQWSTDSDVLESLALEHELPRVLLDW 664

Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL       L  A++   GR+  +     A+ TGR S      QN+P +       
Sbjct: 665 RQLSKLKGTYTENLVAAIAERTGRVHTSYAL-AATTTGRLSSSDPNLQNIPVRT------ 717

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  GK L+ AD + IE R+LA I       +
Sbjct: 718 ------------------EEGRKIRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKR 759

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T ++ F+TPI+ +    R   K +   + Y     G A          G
Sbjct: 760 AFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGIPQGEAG 819

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             ++ + +       + D                       + ++  +  +      A+ 
Sbjct: 820 AYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPEIQAKSVGQRQFAERAAIN 879

Query: 496 DKLIGTACELVKKAW 510
             + G A +++++A 
Sbjct: 880 APIQGAAADVMRRAM 894


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 105/585 (17%), Positives = 190/585 (32%), Gaps = 101/585 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-PSDL---- 57
            + ID ET S            A  A +   + A+                 P  L    
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQD 402

Query: 58  -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGL 105
                  +L +  +  +  N  +++ +F       I        ++LA         +GL
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGL 459

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
              L    L L    + +   +G   I+        +  Y    A+     +      + 
Sbjct: 460 D-ELSERWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQM 517

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D     E+++++      E  +  +   +   G +ID   + +    +  E  KL+++  
Sbjct: 518 DA-KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAY 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLAS 284
                   +      L+  LF   GI    + +     I  + + + QLA D  L ++  
Sbjct: 571 AAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIIL 629

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL     + L E +S  D R+  T      + TGR +      QN+P +     
Sbjct: 630 QNRSLAKLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---- 684

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR    A  G  +V AD + IE R++A ++G+   
Sbjct: 685 --------------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTL 724

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           I AF NGED++  T A+ F T  + VS EQR   K +   L Y  G    AK        
Sbjct: 725 IAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLS 784

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493
               + ++       + +    + ++                      +   +      A
Sbjct: 785 AKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAA 844

Query: 494 VKDKLIGTACELVKKAW----RAKHQGVLQLWKDLTEGFACVVQE 534
           +   + GTA +L+K+A     R   +    LW  L       V +
Sbjct: 845 INAPMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHD 889


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 102/551 (18%), Positives = 189/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +A+     ++    P +L D      +   L 
Sbjct: 352 TIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQL-DL---QDVLGRLK 407

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D     
Sbjct: 464 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 575

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 730 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 789

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 849

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 850 GTASDLIKRAM 860


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 172/509 (33%), Gaps = 72/509 (14%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             +   L     D     VAHN  F+  +  K  G+ I   +   T ++A          
Sbjct: 368 EIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425

Query: 111 NACLA---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCK 164
              L+   L      + T    G+  +            Y    A+   + +  F +  K
Sbjct: 426 MDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNHFLKMLK 485

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D E    L+      S+ E  L ++   +   G +ID   +++    +    K+L+   
Sbjct: 486 DD-EVLYSLY------SNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKELEIKC 538

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             L       S     LR  LF   G+  V  +    ++  S   + QLA++  +  L  
Sbjct: 539 YDLAGQEFNLS-SPVQLREILFDKMGLPPVKKTAKG-QASTSEEVLVQLAEEYEIAALIM 596

Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               + KL     + L + +  +GR+  +    G + TGR S      QN+P +      
Sbjct: 597 KYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS----- 650

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A     +V AD + IE R++A ++ +   +
Sbjct: 651 -------------------PEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           KAF  G DI+  T A+     +D V+ EQR   K +   L Y       AK  +      
Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEA 751

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  +     S   +                            S ++  ++     A+
Sbjct: 752 QEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAI 811

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              + GTA +++KKA    +  +L+ + D
Sbjct: 812 NAPMQGTAADIIKKAMIDVNTMILREYND 840



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            A+   +V        K  +      +++  Y + + G   YL   +S+ + +R    + 
Sbjct: 750 EAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERA 809

Query: 598 TENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLC 648
             N  +Q  + DI+ + M +          +   +V+ VHDE+V E        +   + 
Sbjct: 810 AINAPMQGTAADIIKKAMIDVNTMILREYNDDIKMVMQVHDELVFEVRKAKLNEITTKIK 869

Query: 649 SLMTK 653
           S+M  
Sbjct: 870 SIMET 874


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L     + 
Sbjct: 306 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQL----NRE 354

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +F       I  K W   S+LA    N   +  
Sbjct: 355 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 411

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 412 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 469

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 470 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 526

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 527 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 584

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 585 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 635

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 636 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 680

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 681 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 740

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 741 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 800

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 801 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 844


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 89/541 (16%), Positives = 180/541 (33%), Gaps = 93/541 (17%)

Query: 57   LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
            L   L +  V+ V  N  ++ ++  +  GI++       T +++    L +      +  
Sbjct: 534  LKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAPFD--DTMLISYV--LDAGKGGHGMDE 588

Query: 117  NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                HL       + +A   +  +        +A           Y   D + T  L++ 
Sbjct: 589  LARRHLGHQPITFSDVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 639

Query: 177  LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            + P              ER L  +   +  RG R+D +++ +L    +Q   +L+E+I +
Sbjct: 640  MKPRLVAEHRVAVYETLERPLLPVIARMEQRGIRVDREMLSRLSGDFSQILVRLEEEIQE 699

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285
                   S      +   LF   G+     +    +     + + +LA+    L +    
Sbjct: 700  DAGEKF-SVGSPKQIGDILFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHELPKKILE 757

Query: 286  GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               + KL     + L         R+  +     A+ TGR S      QN+P +      
Sbjct: 758  WRQLSKLKSTYTDALQAHADRETARVHTSFSL-AATTTGRLSSSEPNLQNIPIRT----- 811

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                    +R   +A+ G +L+ AD + IE R+LA +A      
Sbjct: 812  -------------------EEGRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELR 852

Query: 400  KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            KAF +G DI+  T +  F  P+ +++ + R   K +   + Y     G A          
Sbjct: 853  KAFEDGIDIHAATASAMFGVPLKEMTPDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 912

Query: 456  GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
               ++Q+ +       + +                     + Q  S++   +      A+
Sbjct: 913  SAFIKQYFEQFPGIRDYIETTKKSCRDKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 972

Query: 495  KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
               + G+A +++++A               + +LQ+  +L    A    E      R V 
Sbjct: 973  NAPIQGSAADIIRRAMTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVM 1032

Query: 545  N 545
             
Sbjct: 1033 E 1033


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 106/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51
              ID ET S         +  AE            A     A+ +++ P +L    ++ 
Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109
            + + +   L +E V  + H+  ++  +        I  K W   S+LA    N   +  
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHISANH---GIELKGWYFDSMLASYVLNAAATRH 455

Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +A  +  HLT   E   GK    + F +  I+   +      HV  ++L+ E    
Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++A  EL   L    + E  +  +   + + G R+D   + KL    A+  + L+   +
Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++       +     +   LF   GI     +  T +   S S + ++   L    L   
Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628

Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           G A LK    + L E   +D     T      + TGR S      QN+P +         
Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G+ L+ AD + IE R++A  + +D  + AF
Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G+D++  T A+     I+ V+ +QR   K +   L Y        +            
Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++Q+ Q       +                           ++ ++ ++      A+   
Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844

Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           L G+A +++K A     + +     +L   + +     V    +
Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 92/544 (16%), Positives = 179/544 (32%), Gaps = 99/544 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L ++ ++ +  N  ++ ++ K+   I + S         A   G+ +   +     
Sbjct: 399 LKPILENQAILKIGQNIKYDWLVMKQY-NIVMRSFDDTMLLSYALEAGISTHGMDILSER 457

Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                    ++       +  F +  +                +    Y   D + T  L
Sbjct: 458 WLGHKSITYKDLTYNGRKVNSFAQIDL----------------KQATLYAAEDADITLRL 501

Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           ++ L P              +R L  +   + +RG  +D  ++ +L   +AQ    L+E+
Sbjct: 502 WQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEE 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282
           I +L       +     L   LF   G+     ++   +   S   + +LA +  IL R 
Sbjct: 562 IYQLVGEKFNIA-SPKQLGDILFGKIGLPGGSKTKNG-QWSTSAQTLEELAAEGHILPRK 619

Query: 283 ASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
             +   + KL     + L   +    GR+         + TGR S      QN+P +   
Sbjct: 620 IVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLAT-TSTGRLSSSEPNLQNIPVRT-- 676

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IAS G  L+ AD + IE RVLA  A   
Sbjct: 677 ----------------------AEGRKIRTAFIASKGYLLLSADYSQIELRVLAHFADIT 714

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              +AFA G+DI+  T A+ F   ++ +S E R   K +   + Y     G A       
Sbjct: 715 ALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINFGIIYGISPFGLANQLGISR 774

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPE 491
                 +Q + +       + +  +  + H                       ++     
Sbjct: 775 KEASHYIQLYFERFPGIKDYMEKTKMFARHHGYVETIFGRRIHCPEIKAVNPQVRAFNER 834

Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            A+   + G+A +++++A               + +LQ+  +L            +I  R
Sbjct: 835 AAINAPIQGSAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFEVPKSESTKTAILVR 894

Query: 542 RVAN 545
           +V  
Sbjct: 895 KVME 898


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 98/590 (16%), Positives = 188/590 (31%), Gaps = 111/590 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMPSDL 57
           L ID ET   +P+        AE     L   ++ D       V +    +++  + ++ 
Sbjct: 381 LSIDTETTGTEPME-------AE-----LVGMSFSDAENQAYYVPVPANRDEALKIVNEF 428

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  M V  N  ++ I+ +   G+ +  K  +  ++LA     P      +    
Sbjct: 429 RPLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAE 485

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E      +  K   D PP D               Y   D + T +L  
Sbjct: 486 IYLHYQTIHIDELIGAKGKNQKNMRDLPPEDV------------YRYACEDADVTLKLKN 533

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              + E  L  +   I   G RID + + +  E      ++++++I 
Sbjct: 534 VLEKELKEHAAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIY 593

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L  G   +      +   LF    I        T + + S   +  L     +      
Sbjct: 594 ALAGGETFNIGSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE 653

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 654 YRGLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------ 706

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I  +G +   AD + IE R++A ++ +   I
Sbjct: 707 ------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMI 748

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +G DI+  T AK +   I+ V+ + R   K     + Y     G A+         
Sbjct: 749 DAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAERMNVPRQEA 808

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 809 KELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 868

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
              + G+A +++K A    +Q           +LQ+  +L        +E
Sbjct: 869 NAPIQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHDELNFSVPEAEKE 918


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 100/574 (17%), Positives = 184/574 (32%), Gaps = 98/574 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET         L  +     A QA     A+ +   P +L     +      L  +
Sbjct: 357 SLDTETTGLDGMTAQLVGISFSIEAHQAAYLPLAHHYPGAPDQLG----REHALQKLKHW 412

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL-ALNFS 119
           L       +  N  +++ +F                      +  P  + N  L  L  S
Sbjct: 413 LESPAHKKLGQNLKYDQHIFANHGIAFAGIAEDTLLQSYVLESHKPHEMGNLALRHLGLS 472

Query: 120 EHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                   GK      F +  +++                   Y   D + T +L + L 
Sbjct: 473 TVSYADVVGKGAKQIGFDQVDLETATR----------------YAAEDADITLQLHQTLS 516

Query: 179 PLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           P             E  +  +   +   G  ID  ++ +    +  +  ++++   +   
Sbjct: 517 PQLQGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIEKQAFEAAG 576

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF    + +   +     S      + +LA D  L +L      +
Sbjct: 577 QPF-NLNSPKQLSEILFDKLQLPVKKKTPSGTPST-DEEVLQELALDYPLPKLLLEYRGM 634

Query: 290 LKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  +      + TGR +      QN+P +          
Sbjct: 635 AKLKSTYTDKLPQMVNAKTGRVHTSYA-QAVAVTGRLASSDPNLQNIPIRT--------- 684

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   I   G ++V AD + IE R++A ++G++  +KAFA
Sbjct: 685 ---------------PEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFA 729

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            GEDI+  T A+ F+  +D VS EQR   KV+   L Y       A       S     +
Sbjct: 730 AGEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIYGMSAYGLAAQLNIETSAAKQYI 789

Query: 460 QQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKL 498
             +         + D  + ++             LW+          +      A+   +
Sbjct: 790 DLYFARYPGVKRYMDSTREQAKAQGFVETWFGRRLWLPEINGANGMRRQAAERAAINAPM 849

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
            GTA +L+K A  A     +Q W +  +    ++
Sbjct: 850 QGTAADLIKLAMIA-----VQDWLETEKLATKLI 878


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 85/509 (16%), Positives = 157/509 (30%), Gaps = 88/509 (17%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D+ ++  + + L   L D  V+ V  N  ++  +  +  GI +               GL
Sbjct: 458 DQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMAR-RGIRVAPIDDTMLISYVLEGGL 516

Query: 106 PSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                +    L+        +     GKA    F    +                     
Sbjct: 517 HGHGMDELSRLHLGHEPIPFKSVAGTGKAQ-KSFKHVELKPATC---------------- 559

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER +  +   +  RG R+D   + +L  
Sbjct: 560 YAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPARLRRLSS 619

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
                  +L+    ++      +      +   LF    +     +    +     + + 
Sbjct: 620 EFGLRMAELEAQAHEIAGRPF-NVGSPRQIGEILFGELNLPGGKKTASG-QWETGAATLE 677

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            LA+   L R+      + KL     + L  A+        T     A+ TGR +     
Sbjct: 678 GLAETHALPRVLLDWRQLSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGRLASSDPN 737

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +  +                           +R   IA +G  L+ AD + IE 
Sbjct: 738 LQNIPIRTET------------------------GRQIRQAFIAKDGHVLISADYSQIEL 773

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R+LA I       +AF  G DI+  T ++ F  P+  +  E R   K +   + Y     
Sbjct: 774 RLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAINFGIVYGISAF 833

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM----------------- 485
           G A          G  ++ + +      T+ D  +AE   L                   
Sbjct: 834 GLANQLGIDQGEAGAYIKTYFERFPGIRTYMDATRAEVRSLGFVSTVFGRKIHIPAIASK 893

Query: 486 ----QDQYPEFAVKDKLIGTACELVKKAW 510
               +      A+   + G A +++++A 
Sbjct: 894 SGAERQFGERAAINAPIQGAAADIIRRAM 922


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/599 (17%), Positives = 189/599 (31%), Gaps = 112/599 (18%)

Query: 6   IDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQY 60
           ID ET S   +    VGV    E          + + D P +L  D      + + L  +
Sbjct: 365 IDTETTSLDEMVAQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPID-----EVLAKLKPW 419

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS- 119
           L +     +  +  ++R +F    GI++       T + +    +      A LA     
Sbjct: 420 LENPEKKKLGQHIKYDRHVFANH-GIEVEGYA-HDTMLQSYVLEVHKPHGLASLAERHLG 477

Query: 120 ----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                +     +G   I  F +  I                    EY   D + T ++ +
Sbjct: 478 RSGISYEDLCGKGAHQI-SFSQVDIAKAA----------------EYSCEDSDQTLDVHR 520

Query: 176 RLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P  +    L  + Q           +   G  ID   +      +      L+++  
Sbjct: 521 TLWPQLEANEKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAY 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++      +      +    F   G+ +V  +     S      + +LA+D  L      
Sbjct: 581 EIAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPST-DEEVLEKLAEDYPLPAKILE 638

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L +  +   GR+         + TGR S      QN+P +      
Sbjct: 639 HRGLSKLKGTYTDKLGQLANPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT----- 692

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR   +A  G  +  AD + IE R++A I+G++  +
Sbjct: 693 -------------------PEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLL 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF  G D++  T A+ F +  D+VS EQR   KV+   L Y       AK         
Sbjct: 734 RAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAA 793

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494
              ++++         + D  +A +      +                          A+
Sbjct: 794 ASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEINSPNGPRRGGAERAAI 853

Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
              + GTA +L+K +           +   + ++Q+  +L         E       R+
Sbjct: 854 NAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPEAEVEWVRAEIPRL 912


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/519 (17%), Positives = 174/519 (33%), Gaps = 88/519 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +  +L+D     + H++ ++  +F    G+ +   +   T + A        +    L
Sbjct: 426 ERMRAWLQDPARPKLLHHAKYDAHVFANE-GVALAGIQD-DTMLQAYVLESHRGVGLNDL 483

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A  +      +  G       C        +D          +  G Y   D + T +L 
Sbjct: 484 AQRY------LGRGGITYEELCGKGAKQIGFDEVAV------EQAGHYACEDADFTLQLH 531

Query: 175 KRLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P    +  L  + Q           +   G ++D   + +    + QE  +L++  
Sbjct: 532 HALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQLEQRA 591

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      L   LF    + +V  + G   S      +T+LA+D  L ++  
Sbjct: 592 YELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPST-DEEVLTRLAQDYPLPQVLL 649

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   +++  GR+        A  TGR +      QN+P +  +  
Sbjct: 650 EYRGLSKLKSTYTDKLPRMINARTGRVHTHYS-QAAVVTGRLASSDPNLQNIPVRTEA-- 706

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   +A +G  LV AD + IE R++A ++ +   
Sbjct: 707 ----------------------GRRVREAFVAEHG-VLVSADYSQIELRIMAHVSDDANL 743

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
            +AFA G+DI+  T ++ F   +D+V  +QR   K +   L Y  G    A         
Sbjct: 744 QQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGVFGLASNLGITRDA 803

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++       + + +  +  +      +                          A
Sbjct: 804 AQAYIDRYFARYPGVAQYMEHTRQLARQQGYVETVFGRRLQLPDIRAASGPRRQGAERAA 863

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
           +   + GTA +L+K A  A     +Q W D       ++
Sbjct: 864 INAPMQGTAADLIKMAMVA-----VQDWLDAERLATRMI 897


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/534 (18%), Positives = 182/534 (34%), Gaps = 78/534 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           +  Y   ++    +   E +      L YL+DET     ++     ++  +  G++I   
Sbjct: 327 ILGYGIYNDEQAYFISYENALKDESFLAYLKDETKKKYGYDIK-SAVIGSRWNGVEIN-- 383

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            +     LA     P+    LK  C   ++   +   EE       F KG+    P D  
Sbjct: 384 GYTFDLSLASYVLEPAIKEELKYVCTHFDYDG-VQYDEEV------FGKGAKKHIPDDAL 436

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            A H  +        K  V    +  K+     D E  +  +   +   G  IDLD++ +
Sbjct: 437 LAQHTVSKAKAIYELKDVVTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKE 496

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           + E   +  +KL  DI +++     +      L   LF   G+     ++    T + +L
Sbjct: 497 MDEAFDETIEKLSNDIYRISGTTF-NISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQDVL 555

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                      L+L     +  +   L  L E V  D ++    +    + TGR S    
Sbjct: 556 EKIIDAHPVVPLVLEYRMLTKLSSTYLKGLQEQVFPDNKIHTIYK-QTLTHTGRLSSVDP 614

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R   ++ NG  LV  D + IE
Sbjct: 615 NLQNIPVRS------------------------EEGKLIRKAFVSHNGY-LVSFDYSQIE 649

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
            R+LA +A     I AF  G+DI+  T A  F    ++V+ + R+  K +   + Y    
Sbjct: 650 LRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGIIYGMSE 709

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
              +K      +     + ++ +      T+ D                           
Sbjct: 710 FRLSKDIGMSIAEARNFINKYFETYPEVKTYMDEVVEVCKKQGYVSTLLNRKRYIPTIND 769

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            +  ++ Q   +A+   + GT  +++K A             K Q +LQ+  +L
Sbjct: 770 KNFMVRQQAQRYAMNTPIQGTGADILKLAMIEVDKALKVHHLKSQMILQVHDEL 823


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            + ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F       I        ++LA         +GL   L  
Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I         +  Y    A+     +      + D E   
Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +S  DGR+  T      + TGR +      QN+P +           
Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 685 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F T  + VS EQR   K +   L Y  G    AK            + 
Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850

Query: 500 GTACELVKKAW 510
           GTA +L+K+A 
Sbjct: 851 GTASDLIKRAM 861


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/575 (19%), Positives = 192/575 (33%), Gaps = 99/575 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E   A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDTETTSLDPMTAQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLP----REEVLAKLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +             LAL    
Sbjct: 395 LESAQQKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNLALRHLG 452

Query: 120 EHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               K E+         G   +A        +   D T   H   +           E T
Sbjct: 453 VKTIKYEDVAGKGAQQIGFDEVALEKAAEYAAEDADITLRLHQTMYPQLA------AEKT 506

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E   R     D E     + + +   G  ID + + +    IA    +L+    +L  G
Sbjct: 507 LENVYR-----DIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAYELAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +    F    + +V  +     S      + +LA+D  L ++      + 
Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLEHRGLS 619

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   V++  GR+         + TGR +      QN+P +           
Sbjct: 620 KLKSTYTDKLPRMVNASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G KLV AD + IE R++A I+G++  ++AF+ 
Sbjct: 669 --------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQ 714

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GEDI+  T A+ F+    +VS +QR + KV+   L Y       A           L + 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDKLI 499
           ++       + + D            E      LW+          +      A+   + 
Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524
           GTA +L+K +  A            + ++Q+  +L
Sbjct: 835 GTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDEL 869


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/566 (19%), Positives = 195/566 (34%), Gaps = 90/566 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           K+ ID ET S       L  + +   A +AV     ++    P +L D      +   L 
Sbjct: 352 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 407

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111
            +L +  +  +  N  +++ +F      DI        S+LA         +GL   L  
Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGLD-ELSE 463

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    + +   +G   I+        +  Y    A+     +      + D     
Sbjct: 464 RWLGLETITYESLCGKGAKQISFADVAIGQATEYTAQDADFALRLEAHL-RAQMDA-KQL 521

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+++++      E  +  +   +   G +ID   + +    +  E  KL+++        
Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 575

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++ 
Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYALPKIILQNRSLA 634

Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L E +   DGR+  T      + TGR +      QN+P +           
Sbjct: 635 KLKSTYTDKLPEMIFPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G  +V AD + IE R++A ++G+   I AF N
Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GED++  T A+ F    + VS EQR   K +   L Y  G    AK            + 
Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 789

Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499
           ++       + +    + ++                      +   +      A+   + 
Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 849

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLT 525
           GTA +L+K+A        +  W DL 
Sbjct: 850 GTASDLIKRAMID-----VSRWLDLD 870


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/597 (17%), Positives = 202/597 (33%), Gaps = 96/597 (16%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           K+ ID ET S       L  + +   A +AV     ++    P +  D      +   L 
Sbjct: 352 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP-EQIDL---QDVLGRLK 407

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLART-------NGLPSS 108
            +L +  +  +  N  +++ +F    GI +           ++LA         +GL   
Sbjct: 408 PHLENSALKKIGQNLKYDQHVFANY-GIALNGIALNGIAGDAMLASYIIESHLGHGLD-E 465

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L    L L    + +   +G   I         +  Y    A+     +      + D  
Sbjct: 466 LSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA- 523

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              E+++++      E  +  +   +   G +ID   + +    +  E  KL+++     
Sbjct: 524 KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAA 577

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGS 287
                +      L+  LF   GI    + +     I  + + + QLA D  L ++     
Sbjct: 578 GQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNR 636

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL     + L E +S  DGR+  T      + TGR +      QN+P +        
Sbjct: 637 SLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT------- 688

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 VR    A  G  +V AD + IE R++A ++G+   I A
Sbjct: 689 -----------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 731

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F NGED++  T A+ F    + VS EQR   K +   L Y  G    AK           
Sbjct: 732 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 791

Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496
            + ++       + +    + ++                      +   +      A+  
Sbjct: 792 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINA 851

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            + GTA +L+K+A             K + ++Q+  +L         +       ++
Sbjct: 852 PMQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHDELVLEVPEAELDLVKEKLPQI 908


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/592 (19%), Positives = 197/592 (33%), Gaps = 99/592 (16%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VG+ +A A+ +A     A+   D P +L        + + L  +L 
Sbjct: 346 DTETTSLDPMSARLVGMSFALAQGEAAYLPLAHRGTDVPQQLP----LDEVLARLKPWLE 401

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121
            +    +  N  ++  +     GI +       T + +             LA       
Sbjct: 402 SDRHAKLGQNLKYDAHVLLNH-GIRLGGI-THDTLLESYVLESDKPHDMDSLAKRHLGLT 459

Query: 122 LTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                E         G   +A  C  +  +   D T   H   W          VEA   
Sbjct: 460 TIPYTEVCGKGAKQIGFDEVALDCAAAYAAEDADVTLRLHETLWPQ--------VEALPR 511

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L        D E     +   +   G  ID  L+ +  E + +    L+ +   L     
Sbjct: 512 LAALYR---DVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLGLEAEAHVLAGQPF 568

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L   LF    + ++  +  T +       +TQLA+D  L +L     ++ KL
Sbjct: 569 -NLGSPKQLGEILFGKLALPVLKKT-ATGQPSTDEDVLTQLAEDYPLPKLLLEHRSLAKL 626

Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L   V+   GR+        A  TGR +      QN+P +             
Sbjct: 627 KSTYADKLPRMVNPKTGRVHTCFSQATAV-TGRLASTDPNLQNIPIRT------------ 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R+  IA     +V AD + IE R++A ++G+   ++AFA GE
Sbjct: 674 ------------AEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGE 721

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--------------GGAKVFKTMA 452
           D++  T A+ F     +VS EQR   KV+   L Y               G A+ +    
Sbjct: 722 DVHRATAAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSAHGLAKNLGIERGAAQAWIDRY 781

Query: 453 SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGT 501
                 +  + + +K+ +  + +               +     +      A+   + GT
Sbjct: 782 FARYPGVADYMERIKAEAKDKGYVETVFGRRLHLPDIRAQQAGRRQAAERAAINAPMQGT 841

Query: 502 ACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           A +L+KKA  A          K + VLQ+  +L         E    +   +
Sbjct: 842 AADLIKKAMIAVSGWLRASGLKSRLVLQVHDELVLEVPVAEVETLRAALPGL 893


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/593 (18%), Positives = 194/593 (32%), Gaps = 101/593 (17%)

Query: 7   DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   +    VG+ +A  E +A     A+ +   P +L    E   + + L  +L 
Sbjct: 336 DTETTSLDQMAAKLVGMSFAIVEGEAAYLPLAHIYPAAPAQL-PLAE---VLAKLKPWLE 391

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
            +    +  N  ++  +     G+ +       T + +             LA     HL
Sbjct: 392 SDAHPKLGQNLKYDAHVLANH-GLRLGGIA-HDTLLQSYVLESDRPHDMDSLAKR---HL 446

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
                    +   C   +              A +   EY   D + T  L ++L P   
Sbjct: 447 GIDTIPYTAV---CGKGVGQI------CFDQVAIERATEYAAEDADITLRLHRKLWPQLE 497

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E     +   +   G  ID  L+ +  E + +    L+ +   L    
Sbjct: 498 AAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMTLEREAHDLAGQP 557

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF   G+ +V  +  T +       + QLA D  L +L      + K
Sbjct: 558 F-NLGSPKQLGEILFGKLGLPVVKKT-ATGQPSTDEEVLAQLADDYPLPKLLLEHRGLSK 615

Query: 292 L-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   V+   GR+  +      + TGR +      QN+P +            
Sbjct: 616 LKSTYTDKLPRMVNAKTGRVHTSFS-QAVAVTGRLASSEPNLQNIPIRT----------- 663

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R+  IA     +V AD + IE R++A ++ +   +++FA G
Sbjct: 664 -------------AEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEG 710

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
           ED++  T A+ F     +V+ EQR   KV+   L Y       AK      +     + +
Sbjct: 711 EDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGLERAAAAAYIDR 770

Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500
           +       + + +  ++E+                          +      A+   + G
Sbjct: 771 YFARYPGVAAYMERTRSEARARGYVETVYGRRLYLPEIRASQAGRRQAAERAAINAPMQG 830

Query: 501 TACELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           TA +L+KKA  A            + VLQ+  +L         E    +   +
Sbjct: 831 TAADLIKKAMIATRRWLADAALRSRLVLQVHDELVLEVPRDELETVRATLPGL 883



 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
           Q  + D++ + M               +VL VHDE+V E P     +V  TL  LMT
Sbjct: 829 QGTAADLIKKAMIATRRWLADAALRSRLVLQVHDELVLEVPRDELETVRATLPGLMT 885


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/570 (18%), Positives = 195/570 (34%), Gaps = 89/570 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            K+ ID ET S       L  + +   A +AV     ++    P +L D      +   L
Sbjct: 353 EKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QYVLDRL 408

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             +L +  +  +  N  +++ +F       I     +  ++LA         +GL   L 
Sbjct: 409 KPHLENSALKKIGQNLKYDQHVFANY---GIALNGIVGDAMLASYIIESHLGHGLD-ELS 464

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I         +  Y    A+     +        D    
Sbjct: 465 GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDD--KQ 522

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+++++      E  +  +   +   G +ID   + +    +  E  KL+++       
Sbjct: 523 LEMYEKM------ELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQ 576

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  +   + QLA D  L ++     ++
Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSL 635

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E +S  D R+  T      + TGR +G     QN+P +          
Sbjct: 636 AKLKSTYTDKLPEMISPRDKRVHTTYA-QAVAITGRLAGNNPNLQNIPIRT--------- 685

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   I AF 
Sbjct: 686 ---------------EEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 730

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F    + VS EQR   K +   L Y  G    AK            +
Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
            ++       + +    +  +                      +  ++ +    A+   +
Sbjct: 791 DRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNANIRARAERAAINAPM 850

Query: 499 IGTACELVKKAW----RAKHQGVLQLWKDL 524
            GTA +L+K+A     R   +     W DL
Sbjct: 851 QGTASDLIKRAMIDVSRWLSECEASPWDDL 880


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 183/558 (32%), Gaps = 99/558 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S   +    VG+    +         A+ +   P +L           ++L  
Sbjct: 363 ALDTETDSLDGMRARIVGLSFSVQPYEACYIPLAHTYPGAPDQLP--------LDEVLAA 414

Query: 61  LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L+    D +   +  N  ++  +F    GI +       T + +             LA 
Sbjct: 415 LKSWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGY-VHDTLLQSYVLEAHKPHSLESLA- 471

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             S HL +       +A      I     + TRA          EY   D + T ++ + 
Sbjct: 472 --SRHLDRKGLSYEDVAGKGAQQIPFAQVELTRAT---------EYSGEDSDMTLDVHRV 520

Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P  +            E    ++   I   G  ID  L+ +    +AQ    L+++  
Sbjct: 521 LWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVALEQEAH 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L      +      +   LF   GI     +     S      + +LA D  L      
Sbjct: 581 ALAGQPF-NLGSPKQIGEILFNKLGIPAKKKTASGAPST-DEEVLAELAADYPLPAKLLE 638

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             ++ KL     + L   V++  GR+         + TGR +      QN+P +      
Sbjct: 639 HRSLAKLKGTYTDKLPLMVNAATGRVHTNYA-QAVAVTGRLASNDPNLQNIPIRT----- 692

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR   IA  G  ++ AD + IE R++A I+ +   +
Sbjct: 693 -------------------PEGRRVREAFIAPPGHVILSADYSQIELRIMAHISEDPGLL 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           KAFA G D++  T ++ FN P+ +VS EQR   KV+   L Y  G    A          
Sbjct: 734 KAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGAFGLASNLGIEQKAA 793

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494
              + ++         + D  +A +  L   +                          A+
Sbjct: 794 KDYIDRYFARFAGVKRYMDETRARAKELGYVETLFGRRIYLPEINGGNGPRRTGAERQAI 853

Query: 495 KDKLIGTACELVKKAWRA 512
              + GTA +L+K A  A
Sbjct: 854 NAPMQGTAADLIKLAMIA 871



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RR+   ++ G      T      R+           +Q  + D++   M          
Sbjct: 829 GRRIYLPEINGGNGPRRTGA---ERQAINAP------MQGTAADLIKLAMIAVQAALDAQ 879

Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMT 652
                +V+ VHDE+V E P+    ++   +  LM 
Sbjct: 880 QRATCMVMQVHDELVFEVPEAELDWARTAVPELMA 914


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/576 (18%), Positives = 199/576 (34%), Gaps = 103/576 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQA----VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   L    V      A         A+ + D P +L    ++  + + L   L 
Sbjct: 356 DTETDSLDVLSANLVGISCADAPGQACYIPLAHDYLDAPRQL----DRQYVLARLQPLLE 411

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           DE V  +  N  ++  +  +  GI +    +  T + +     +        LA    +H
Sbjct: 412 DEGVAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMDSLAARHLDH 469

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            T   E  A   +  + + +  P            +   EY   D + T +L +RL P  
Sbjct: 470 KTITFEEIAGKGK-GQLTFNQIP-----------LEQAAEYAAEDADVTLQLHQRLWPTL 517

Query: 182 DGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +GE             L  +   +   G  ID  ++ +  + +A   + L++        
Sbjct: 518 EGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAHSEAGE 577

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAI 289
               S  T  L+  LF    + ++  + G   S  +   + +LA     L ++      +
Sbjct: 578 PFNLS-STKQLQAILFEKQQLPVLKKTPGGAPST-NEEVLAELADQGYALPQVILEYRTL 635

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + V+   GR+  +      + TGR S      QN+P +          
Sbjct: 636 AKLKSTYTDKLPQMVNPLTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS--------- 685

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA  G ++V AD + IE R++A ++G+   + AFA
Sbjct: 686 ---------------DEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLSGDKGLLAAFA 730

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            G+DI+  T A+ F  P++ VS +QR   K +   L Y       A+            +
Sbjct: 731 AGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRYM 790

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
             + +       + +                       +  + +   +      A+   +
Sbjct: 791 DLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAPM 850

Query: 499 IGTACELVKKAWRAKH----------QGVLQLWKDL 524
            GTA +++K+A  A            + ++Q+  +L
Sbjct: 851 QGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVHDEL 886



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E P++   +V   + +LM
Sbjct: 851 QGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVHDELVFEVPESQVEAVVCQVRALM 906


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/534 (15%), Positives = 166/534 (31%), Gaps = 95/534 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
                 L++   + +  N  F+ ++ +K    ++     +  +++A     P      + 
Sbjct: 399 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 455

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +EE      +  + S+ + P            +   EY   D + T +
Sbjct: 456 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADVTLK 503

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L     P           +  E  L  +   +   G  +D   + +    +     KL++
Sbjct: 504 LKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQ 563

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +L      +   T  +   LF    +D       T     S   + +L     +   
Sbjct: 564 EVYELAGAEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 622

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L E ++   G++  +      + TGR S      QN+P     
Sbjct: 623 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 676

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395
                                      +R   I  N       AD + IE R++A ++G+
Sbjct: 677 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 717

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +G DI+  T AK +  P+++V+ + R   K     + Y     G A+     
Sbjct: 718 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 777

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S     +  +         + +                          SH+  ++    
Sbjct: 778 RSESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 837

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
             A+   + G+A +++K A             K + +LQ+  +L         E
Sbjct: 838 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE 891


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 183/529 (34%), Gaps = 89/529 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC 113
           S L + L D +++ VA N  +  ++ K+  G+ +       T +++        +     
Sbjct: 476 SRLKELLEDPSILKVAQNLKYGYLVMKRH-GVTMQGFD--DTMLISYVLDAGNGAHGMES 532

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           LA  +  H     +G     R    +ID    D   A           Y   D +    L
Sbjct: 533 LAERWLGHTPIASKGITGSGR-SSLTIDFVDIDKAAA-----------YSAEDADIALRL 580

Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +  L P              ER L  +   + +RG  +D  ++ +L   +AQ    L+++
Sbjct: 581 WHVLKPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDE 640

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282
           I +L             L   LF   G+     ++ T +   S   +  LA     L R 
Sbjct: 641 IYRLAGETFTI-GSPKQLGDILFGKLGLPGGSKTK-TGQWSTSAQVLEDLAAAGHDLPRK 698

Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                 + KL     + L   V  + +   T     A+ TGR S      QN+P +    
Sbjct: 699 IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFALAATTTGRLSSSDPNLQNIPIRT--- 755

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  +A+ G KLV AD + IE RVLA +A    
Sbjct: 756 ---------------------GEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQ 794

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AFA+G DI+  T ++ F  P+D +  E R   K +   + Y     G A       S
Sbjct: 795 LRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGIIYGISAFGLANQLSIERS 854

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
             G  ++++ +       + +                     +    S +  M+      
Sbjct: 855 EAGDYIKRYFERFPGIRDYMENTKTFARENGYVETIFGRRAHYPDIRSSNPSMRAFNERA 914

Query: 493 AVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEG 535
           ++   + G+A +++++A       +       ++   + +     V+EG
Sbjct: 915 SINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEVEEG 963


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/603 (17%), Positives = 199/603 (33%), Gaps = 122/603 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP-----SD 56
           D ET S            A +A I   ++A++                   +P       
Sbjct: 338 DTETTSLD----------AMRAEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAETLER 387

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNA 112
           L  +L  E    + H+  ++R +        I  +  +  ++L        +    L + 
Sbjct: 388 LKPWLESERHGKLGHHLKYDRNVLGNH---GITLRGIVDDTLLESFCLDAGANRHDLDSL 444

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L++     +   GK +        I     D   A           Y   D +   
Sbjct: 445 AERHLDYKTTHYEDVAGKGVKQ------IPFAEVDIGIATD---------YAGEDADICL 489

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L     P             + E  L  +   I   G ++D D + +  + +  E +++
Sbjct: 490 QLDAVFQPRLQAAEGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMERI 549

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           + +  +   G   +      ++  LF   G+ ++  +     S  +   + Q+A D  L 
Sbjct: 550 EREAFEEAGGEF-NLGSPKQIQEILFERLGLPVLRRTPKGQPST-AEDVLEQMADDYALP 607

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           RL      + KL      TL   +    GR+  +    GA+ TGR S      QN+P + 
Sbjct: 608 RLILEHRGLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAA-TGRLSSSEPNLQNIPVRT 666

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
            +                           +R   IA  G +L+ AD + IE R++A ++ 
Sbjct: 667 EA------------------------GRRIRRAFIAEEGHQLLAADYSQIELRIMAHLSQ 702

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   +KAFA G+DI+  T A+ F    ++VS +QR   K +   L Y       A+    
Sbjct: 703 DAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINFGLIYGMSAWGLARNLGI 762

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489
                   + ++         + +                       +  S +   + Q 
Sbjct: 763 EQGEAREYIDRYFSRYPGVHDYMERARASGRENGYVETLFGRRLYLPEINSRNGARRQQS 822

Query: 490 PEFAVKDKLIGTACELVKKAW-RAKH---------QGVLQLWKDLTEGFACVVQEGGSIS 539
              A+   + GTA +++K+A  R  H         + ++Q+  +L    A    E  +  
Sbjct: 823 ERVAINAPMQGTAADIIKRAMVRVAHDLEDTGIDARMIMQVHDELVFEVADAAVEDLTTL 882

Query: 540 ARR 542
            R+
Sbjct: 883 VRK 885


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/561 (18%), Positives = 186/561 (33%), Gaps = 90/561 (16%)

Query: 2   SKLFIDIETRSPQPLP----KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +   +D ET S  PL      + V   A +A     A+ ++  P +L D  E   M   +
Sbjct: 334 NHFALDTETTSENPLKAKLVGISVSLKANEAFYIPLAHKYEGVPKQL-DMNETLNMLKGV 392

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
            +   +  +  +  N  ++ I+ K+  GIDI    +  T + +        +     +AL
Sbjct: 393 FE---NPDIKKIGQNIKYDWIVLKRH-GIDIAGV-YSDTMIASYLINPSKRAHNLDQIAL 447

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +F  H     E      +   G  + P                  Y   D + T      
Sbjct: 448 DFLGHKKITFEETVGKKKPESGFSNVPLEKA------------VSYACEDADITLMAHDV 495

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P            + E  L  +   +  +G  +D + + +L +   Q+ + L+E+I  
Sbjct: 496 LFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQIEDLEENIYS 555

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +      + +    L   LF    + +   ++           +T+LA++  L  L    
Sbjct: 556 VAGMTF-NIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNHELPALVLRH 614

Query: 287 SAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L E    +  R+  +      + TGR S      QN+P         
Sbjct: 615 RTLSKLKSTYTDALLEIADPETERIHTSFN-QTVTATGRLSSSNPNLQNIP--------- 664

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +RS  +   G KL+ AD + IE R+LA  A ++  I 
Sbjct: 665 ---------------VKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAHCAEDEILIN 709

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456
           AF   EDI+  T  + F    + ++ E R   K +  ++ Y   A    K          
Sbjct: 710 AFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTINFSIMYGISAFSLSKDLGISQKMAQ 769

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             +  +    K    F D   +++H                     +  +       AV 
Sbjct: 770 TYINNYFARYKEVKRFIDKTISDAHVNKKTSTLLGRIRLLPDIDSSNKIVIAAAERIAVN 829

Query: 496 DKLIGTACELVKKAWRAKHQG 516
             + GTA +L+K A     + 
Sbjct: 830 TPIQGTAADLIKIAMINIDKA 850



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
               +Q  + D++   M N  K          ++L+VHDE+V E P      V  L   M
Sbjct: 828 VNTPIQGTAADLIKIAMINIDKAFTEKKLKAAMLLSVHDELVFEVPPDELDMVSDLVKNM 887

Query: 652 TKNPSWAKGLPLK 664
            +N  W   +PLK
Sbjct: 888 MENV-WTLKVPLK 899


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/536 (17%), Positives = 186/536 (34%), Gaps = 83/536 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L ++ V+ +  N  ++ ++ K+   I + S         A   G+ +   +     
Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQY-NIVMCSFDDTMLLSYALEAGISTHGMDVLSKR 500

Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
                    ++       I  F +  +     Y    A+  ++ WQ+         +   
Sbjct: 501 WLGHKPISYKDLTHSGRKIVSFAQVDLKQATLYAAEDADITLRLWQVLKPQLV--AQKMT 558

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           ++++RL      +R L  +   + +RG  +D  ++ +L   +AQ    L+E+I +L    
Sbjct: 559 KIYERL------DRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGEK 612

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290
              +     L   LF   G+     ++   +   S   + +LA +  IL R       + 
Sbjct: 613 FNIA-SPKQLGDILFGKMGLLGGAKTKSG-QWSTSAQTLEELAAEGHILPRKIIDWRQLT 670

Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   +  + GR+         + TGR S      QN+P +           
Sbjct: 671 KLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSSEPNLQNIPVRT---------- 719

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +AS G  L+ AD + IE R+LA +A      +AF  
Sbjct: 720 --------------AEGRKIRKAFVASKGYLLLSADYSQIELRILAHVADITALKEAFTK 765

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G+DI+  T ++ F   ++ ++ E R   K +   + Y     G A             +Q
Sbjct: 766 GQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQ 825

Query: 461 QFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------AVKDKLI 499
            + +       + +  +  + H          +  YPE               A+   + 
Sbjct: 826 LYFERFPGIEDYMERTKIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERAAINAPIQ 885

Query: 500 GTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           G+A +++++A           R   + +LQ+  +L            +I  ++V  
Sbjct: 886 GSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESTKTAILIKKVME 941


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/580 (18%), Positives = 196/580 (33%), Gaps = 109/580 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E  +A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDTETTSLDPMIAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLAKLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +       +     LAL    
Sbjct: 395 LESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSLALRHLG 452

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           E   K E+  GK      F + ++D                            T  L + 
Sbjct: 453 EKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQA 496

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P             + E     + + +   G  ID + + +    IA    +L+ +  
Sbjct: 497 LYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEIATRLIQLEGEAY 556

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L  G   +      +    F   G+ ++  +     S      + +LA+D  L ++   
Sbjct: 557 ELAGGEF-NLGSPKQIGQIFFEKLGLPVIKKTPSGAPST-DEEVLQKLAEDYPLPKVLLE 614

Query: 286 GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   V+   GR+         + TGR +      QN+P +      
Sbjct: 615 HRGLSKLKSTYTDKLPRMVNRQTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G KLV AD + IE R++A I+G++  +
Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLM 709

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF+ GEDI+  T ++ FN    +VS +QR + KV+   L Y       A          
Sbjct: 710 RAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAA 769

Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494
            + + ++       + + D            E      LW+          +      A+
Sbjct: 770 KMYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
              + GTA +L+K +  A            + ++Q+  +L
Sbjct: 830 NAPMQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDEL 869


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/493 (17%), Positives = 174/493 (35%), Gaps = 73/493 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNA 112
           L   L D+ V+ +  N  ++ ++ K+  GI I           A   G      ++L   
Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIHCFDDTMLLSYALEAGTLTHNMNALSER 500

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
            L      +      GK + +        +  Y    A+  ++ WQ+         +   
Sbjct: 501 WLGHKPIAYKDLTHNGKKITSFAEVDLKQATLYAAEDADITLRLWQVLKPQLV--AQGMT 558

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +++RL      +R L  +   + +RG  +D  ++L+L   +AQ    L+E+I +L+   
Sbjct: 559 RIYERL------DRPLIEVLARMEERGILVDRQILLRLSGELAQAAFILEEEIYQLSGEK 612

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290
              +     L   LF   G+     ++G  +   S   + +LA +  IL R       + 
Sbjct: 613 FNLA-SPKQLGDILFGKMGLPGGAKTKGG-QWSTSAQTLEELAAEGHILPRKIIDWRQLA 670

Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   +    GR+         + TGR S      QN+P +           
Sbjct: 671 KLKSTYTDALPSYILPKTGRVHTNYSL-AITSTGRLSSSEPNLQNIPVRT---------- 719

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R+  +A     L+ AD + IE R+LA IA      +AF+ 
Sbjct: 720 --------------AEGRKIRTAFVAPKRHVLLSADYSQIELRILAHIANITALKEAFSR 765

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G+DI+  T ++ F   I+ +  + R   K +   + Y     G A          G  +Q
Sbjct: 766 GQDIHAITASQIFGVAIEGMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQ 825

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                     + + ++    ++      A+   + 
Sbjct: 826 LYFERFPGIKDYIETTKTFARQNGYVETIFGRRIHYPEIKAASPQVRSFNERAAINAPIQ 885

Query: 500 GTACELVKKAWRA 512
           G+A +++++A   
Sbjct: 886 GSAADIIRRAMIQ 898



 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP-DTPYFSVGTLCSLM 651
           +Q  + DI+   M               ++L VHDE+V E P +    ++  +  +M
Sbjct: 884 IQGSAADIIRRAMIQMEDALEKEKLSAKMLLQVHDELVFEVPEEESKKTMAVVKKVM 940


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%)

Query: 5   FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +D ET    P+    VG+ ++YAE     +        PV   DR E   + ++     
Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRAEAQKIVNEFRPAF 452

Query: 62  RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             E V+ V  N  ++ ++             D     ++    L       + +      
Sbjct: 453 EKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++  E +    +G+  +      +I     +           L  E    D E       
Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   +   G R+D + + +  E       +++E++ +L       +
Sbjct: 566 KLF--YEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                +   LF    I        T + + S   +  L     +         + KL   
Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682

Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   G++  +      + TGR S      QN+P +                
Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+
Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIH 777

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T AK +   IDKV++EQR+  K     + Y     G A+            +  + + 
Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                          S +  ++      A+   + G+A +
Sbjct: 838 YPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           ++K A    +Q           +LQ+  +L        +E 
Sbjct: 898 IIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/554 (17%), Positives = 176/554 (31%), Gaps = 100/554 (18%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             + + L   L D  V+ +A N+ ++  +  +  GI++               GL     
Sbjct: 441 EEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY-GINVGPIEDTMLISYVLEAGLHGHGM 499

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +    L         ++    +A   KG I         A           Y   D + T
Sbjct: 500 DELSELWLGHKPISFKQ----VAGSGKGQISFKHVGLAEATA---------YAAEDADVT 546

Query: 171 RELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L+  L P              ER L  +   + + G R+D D + +L    +      
Sbjct: 547 LRLYNVLKPRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPDTLRRLSNEFSMRMADF 606

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +    +L      +      +   LF    +     +  T +       +  LA +  L 
Sbjct: 607 EARAQELVGRPF-NLGSPKQIGDVLFGEMALKGGKKT-ATGQWSTDSDVLEALALEHELP 664

Query: 281 RLASSGSAILKLNT-----LSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           R+      + KL       L  A++  G  R+  +     A+ TGR S      QN+P +
Sbjct: 665 RVLLDWRQLSKLKGTYTENLIAAIAPGGGNRVHTSYAL-AATTTGRLSSSDPNLQNIPIR 723

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A+ GK L+ AD + IE R+LA I 
Sbjct: 724 T------------------------EEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIG 759

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 KAF  G DI+  T ++ FN PI+ +  E R   K +   + Y     G A    
Sbjct: 760 DIPQLKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINFGIVYGISAFGLANQLS 819

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQ 488
                 G  ++ + +       + +  +A                         +  +  
Sbjct: 820 IPQGEAGAYIKTYFERFPGIQAYMEATKAFVREHGYVTTIFGRKINIPDIGGKSVAHRQF 879

Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538
               A+   + G A +++++A               + +LQ+  +L       V E    
Sbjct: 880 AERAAINAPIQGAAADVMRRAMVRMPGALKAAGLSSRMLLQVHDEL-------VFEAPEA 932

Query: 539 SARRVANVPRLVMR 552
            A+   +V R VM+
Sbjct: 933 EAQATIDVAREVMQ 946


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 102/545 (18%), Positives = 188/545 (34%), Gaps = 91/545 (16%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
              I L  YA  ++    +   E +    D L YL+DE     ++N    +IL  +  GI
Sbjct: 325 HKSIVL-GYALYNKEQAFYISFEDALNDQDFLNYLKDEKYSKYSYNIK-AQILSARWNGI 382

Query: 87  DIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           DI    +     LA       L   +K+ C   ++          +     F K +    
Sbjct: 383 DIKGMNF--DLQLASYILNPSLKDEMKSICDYYDYDS-------VQYEEEVFGKLAKKHI 433

Query: 144 PYDCTRANHV-----QAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDR 197
           P     A H        + L  E  +R  +  + +L++ L      E  +  +   +   
Sbjct: 434 PEIDLLARHTVSKAKAIYDLKDEAIQRLKDEEQFDLYQNL------ELPVTYILADMEYV 487

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G +ID+ ++ +++    Q+ K+++EDI  L D    +      L   LF   G+     +
Sbjct: 488 GAKIDIHVLKEMEMDFEQQIKQIEEDIYMLADKEF-NISSPKQLGEVLFERLGLPNGKKT 546

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T + IL           LI      +  +   +  L E V +DG++         
Sbjct: 547 KTGYSTSQDILEKIEGLHPIIPLIQKYRMLTKLSSTYVKGLQEQVFADGKIHTIYN-QAL 605

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           ++TGR S      QN+P                                +R   I S+  
Sbjct: 606 TQTGRLSSIEPNLQNIP------------------------VRQEEGKLIRKAFIPSHDY 641

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV  D + IE R+LA +AG    I+AF   +DI+  T A  F    ++V+   R   K 
Sbjct: 642 -LVTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKA 700

Query: 435 MELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474
           +   + Y  G    ++            ++++ +       + D                
Sbjct: 701 VNFGIIYGMGEFKLSQQIGVSLKEAKEFIRRYFEEYPEIKVYMDQIVEDCKNTGYVSTVL 760

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ----------GVLQ 519
                       +  +++Q   FA+   + G+  +++K A    +Q           +LQ
Sbjct: 761 NRKRYIPTINDKNFMVREQARRFAMNSPIQGSGADILKLAMMKVNQLMKDKHLKSEMILQ 820

Query: 520 LWKDL 524
           +  +L
Sbjct: 821 VHDEL 825


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 163/482 (33%), Gaps = 92/482 (19%)

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE--- 127
           N  ++R + +   GI++    +  T + +     +        L+  + +H T   E   
Sbjct: 1   NLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIA 58

Query: 128 GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------- 179
           GK      F + ++                +  G Y   D + T +L  ++ P       
Sbjct: 59  GKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPELQQHKG 102

Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 + E  L  +   +   G +ID  ++ K  E I     +L++    +       S
Sbjct: 103 PLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLS 162

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
             T  L+  LF   GI  +  + G   S  S   + +LA D  L ++      + KL   
Sbjct: 163 -STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKST 220

Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   GR+  +      + TGR S      QN+P                  
Sbjct: 221 YTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------ 261

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+
Sbjct: 262 ------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIH 315

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQN 465
             T A+ F  P+D V+ EQR   K +   L Y   A    +            +  + + 
Sbjct: 316 RATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFER 375

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYP---------------------EFAVKDKLIGTACE 504
                 + +  +A++      +                          A+   + GTA +
Sbjct: 376 YPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAAD 435

Query: 505 LV 506
           ++
Sbjct: 436 II 437


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%)

Query: 5   FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +D ET    P+    VG+ ++YAE     +        PV   DR E   + ++     
Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRAEAQKIVNEFRPAF 452

Query: 62  RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             E V+ V  N  ++ ++             D     ++    L       + +      
Sbjct: 453 EKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++  E +    +G+  +      +I     +           L  E    D E       
Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   +   G R+D + + +  E       +++E++ +L       +
Sbjct: 566 KLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                +   LF    I        T + + S   +  L     +         + KL   
Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682

Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   G++  +      + TGR S      QN+P +                
Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+
Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIH 777

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T AK +   IDKV++EQR+  K     + Y     G A+            +  + + 
Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                          S +  ++      A+   + G+A +
Sbjct: 838 YPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           ++K A    +Q           +LQ+  +L        +E 
Sbjct: 898 IIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 102/553 (18%), Positives = 184/553 (33%), Gaps = 79/553 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L     D     VAHN  F+  +  K   I+I  K    T ++A             L
Sbjct: 373 DKLKPLFADVKKAKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 A---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVE 168
           +   L      +      GK               Y    A+   + +  F    ++D E
Sbjct: 431 SKEHLGIEPIAYTAIAGTGKHQQTLDQIDIEIVAKYAAEDADITFRLFNHFKALLEQD-E 489

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +L+       + E  L ++   +   G +ID   +++    +    K+L+     L 
Sbjct: 490 TLYKLY------CEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNLA 543

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S     LR  LF   G+  V  +    +   S   + QLA+D  +  L      
Sbjct: 544 GQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KL     + L + +  + R+  +    G + TGR S      QN+P +          
Sbjct: 602 LSKLKNTYTDKLPKMLDVNSRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS--------- 651

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA NG  +V AD + IE R++A ++ +   +KAF 
Sbjct: 652 ---------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
              DI+  T A+     ID+VS EQR   K +   L Y       AK  +   +     +
Sbjct: 697 QSLDIHSATAAEVLGIGIDEVSSEQRRKAKAINFGLIYGMSAFGLAKQLEIPRAEAQEYI 756

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
             +     S   +                         +  S ++  ++     A+   +
Sbjct: 757 DIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPM 816

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            GTA +++KKA    +  +LQ        +   V+    +    V  V +  +      +
Sbjct: 817 QGTAADIIKKAMIDVNTMILQ-------EYNSEVKMVMQVHDELVFEVKKTKLEEIVAKI 869

Query: 559 HIVLPSSRRLVYS 571
             ++ ++ +L   
Sbjct: 870 KSIMEAAVKLSVP 882



 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     A+   ++        K  +      +++  Y + + G   YL    S+ + +R 
Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805

Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643
              +   N  +Q  + DI+ + M +          +   +V+ VHDE+V E   T     
Sbjct: 806 AAERAAINAPMQGTAADIIKKAMIDVNTMILQEYNSEVKMVMQVHDELVFEVKKTKLEEI 865

Query: 644 VGTLCSLM 651
           V  + S+M
Sbjct: 866 VAKIKSIM 873


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/563 (14%), Positives = 176/563 (31%), Gaps = 105/563 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
                 L++   + +  N  F+ ++ +K    ++     +  +++A     P      + 
Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +EE      +  + S+ + P            +   EY   D + T +
Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADVTLK 499

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L     P           +  E  L  +   +   G  +D   + +    +     KL++
Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +L      +   T  +   LF    +D       T     S   + +L     +   
Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 618

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L E ++   G++  +      + TGR S      QN+P     
Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395
                                      +R   I  N       AD + IE R++A ++G+
Sbjct: 673 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 713

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +G DI+  T AK +  P+++V+ + R   K     + Y     G A+     
Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S     +  +         + +                          SH+  ++    
Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + G+A +++K A             K + +LQ+  +L         E      
Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE------ 887

Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563
                V ++V+   +  + + +P
Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/600 (16%), Positives = 188/600 (31%), Gaps = 101/600 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD- 56
           D ET S       L  V +     +A      +     P    D         + +P D 
Sbjct: 407 DTETTSLDPMSCDLVGVSLATAPGRACYIPLRHVASAGP----DLLGGGEPPPAQIPFDD 462

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
               L   L   +V+ +A N  ++ ++     G+D+           A  +G  +   + 
Sbjct: 463 AIARLKPLLEARSVLKIAQNMKYDLLVLA-CCGVDVAPIEDTMLISYALDSGRNNHGLDE 521

Query: 113 CLALNFSEHLTKM----EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
               +              G++ I         +  Y    A+  ++ W++         
Sbjct: 522 LAKKHLGHECIPFAAVAGSGRSFIGFARVPLDKATEYAAEDADVALRLWRVLKPRLA--A 579

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E    +++ L      ER +  +   +  RG  ID +++ +L    AQ+  +L+ +I  L
Sbjct: 580 EHMTSVYETL------ERPMVGVLAAMERRGVAIDRNILSRLSGEFAQDMARLEAEIYDL 633

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281
                 +      L   LF   G+     +  T     S S +  LA+        IL+ 
Sbjct: 634 AGESF-NLGSPKQLGDILFGRMGLPGAKKT-ATGAWSTSASVLEDLAESGNTFAARILDW 691

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       + L   V+    R+  +     A+ TGR S      QN+P         
Sbjct: 692 RQLSKLKSTYTDALPGFVNKATNRVHTSYAL-AATTTGRLSSSEPNLQNIP--------- 741

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                              A   +R   +A  G  L+ AD + IE R+LA IA      +
Sbjct: 742 ---------------VRNEAGRKIRKAFVAEPGHALISADYSQIELRLLAHIADIPQLRQ 786

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AFA G DI+  T ++ F  P+  +  + R   K +   + Y     G A           
Sbjct: 787 AFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINFGIIYGISAFGLANQLGIPREEAA 846

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVK 495
             ++++ +       + D  +       +                        +   A+ 
Sbjct: 847 AYIKRYFERFPGIRDYMDKTKRLVREQGVVTTIFGRKCHFPRIGSSNASERAFFERAAIN 906

Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
             + G A +++++A               + ++Q+  +L         E      +RV  
Sbjct: 907 APIQGAAADIIRRAMARMDAALATAGCSARMLMQVHDELVFEAPLEETETTIAVVKRVME 966


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 184/555 (33%), Gaps = 99/555 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKIKVGQHAKFAINLLANCA--- 416

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +       T+ +    +        I+     
Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIA 469

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 589 PVLSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + + R   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++KKA  A +     
Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 863 SGLDARVILQVHDEL 877



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 98/586 (16%), Positives = 183/586 (31%), Gaps = 102/586 (17%)

Query: 4   LFIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           L +D ET    P+    VG+ +AYAE     +        PV   DRTE   +       
Sbjct: 353 LSLDTETTGTDPIRAELVGMSFAYAENQAFYV--------PVPA-DRTEAQRIVDKFKPV 403

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +   + V  N  ++ ++        +  +  +  +++A     P            +E
Sbjct: 404 FENPQTLKVGQNIKYDMLVLANY---GVEIQGPMFDTMIAHYVLQPELHHGMD---YLAE 457

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
                E  K       KG       D   AN          Y   D + T +L   L   
Sbjct: 458 IYLHYETIKIEELIGPKGKNQKNMRDLDPANI-------YRYACEDADVTLKLKNVLEKE 510

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      D E  L  +   +   G RID + + +          +++E++ +L   
Sbjct: 511 LKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLAGV 570

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               +     +   LF    I        T + + S   +  L     +         + 
Sbjct: 571 EFNIA-SPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKILEHRGLK 629

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + ++   G +  +      + TGR S      QN+P             
Sbjct: 630 KLLGTYIDALPQLINPETGHIHTSFN-QTVTATGRLSSSNPNLQNIP------------- 675

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   I   G +   AD + IE R++A ++G+   I+AF  
Sbjct: 676 -----------VRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRA 724

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            +DI+  T AK +   ++ V++EQR+  K     + Y     G A+            + 
Sbjct: 725 NQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLGIDRKEAKELID 784

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            + +N      + D                          S +  ++      A+   + 
Sbjct: 785 GYFENYPHVKEYMDSSIQAARQKGYIETVFRRRRYLPDINSRNAVVRGYAERNAINAPIQ 844

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
           G+A +++K A             + + +LQ+  +L        +E 
Sbjct: 845 GSAADIIKVAMIRIYRRFREEGIRSKMILQVHDELNFSVVPEEKEK 890


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/598 (17%), Positives = 188/598 (31%), Gaps = 101/598 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMPSD- 56
              +D+ET S  PL          +A I   + ++ D                  +P   
Sbjct: 314 TFAVDLETTSLNPL----------EAEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363

Query: 57  LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           +L  L     D  +  V  N  ++  +F++     I      C +++A     P    + 
Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH---GIELGGVWCDTMVASYLLNPVRSGHG 420

Query: 113 CLALNFSEHLTKM-------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +L       KM        +GK  +         +  Y C  ++   AW L   +  R
Sbjct: 421 LDSLAVEHLDHKMISYEEVAGKGKEQVNFAQVPVEKASTYSCEDSDA--AWLLHRLFLPR 478

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                  ++       D E  L  +   +   G ++DL L+ +L     ++  +L+  I 
Sbjct: 479 -----VAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELEGRIT 533

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279
            L      +      L   LF    +     ++       +   + +LA+       LIL
Sbjct: 534 GLAPEPF-NLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIAALIL 592

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                +       + L + V    GR+  +      + TGR S      QN+P +     
Sbjct: 593 QYRGLAKLKSTYTDALPKLVQPATGRVHTSYN-QTVTNTGRLSSSEPNLQNIPVRT---- 647

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G  L+ AD + IE RVLA  + +   
Sbjct: 648 --------------------EEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVF 687

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
             AFA  EDI+  T A+ F    + V+ E R   K +   + Y  G    AK        
Sbjct: 688 CDAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGIATKV 747

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               +  +         F D                         +S +  ++      A
Sbjct: 748 AREFIDNYFARHPGARAFLDGCVREAEEKGHVTTLLGRRLPIPDIKSANGNIRAFAQRNA 807

Query: 494 VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545
           V   + G+A +++K+A       +       +L   + +     V +G  ++  ++  
Sbjct: 808 VNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQVHDELVFEVPKGEVVAMEQLVR 865


>gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 98/587 (16%), Positives = 187/587 (31%), Gaps = 120/587 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD--- 56
            +D ET S   +           A I   +++                   + +P D   
Sbjct: 347 ALDTETTSLDEMV----------AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEVL 396

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L +     +  +  ++R +F    GI++       T + +    +      A L
Sbjct: 397 AKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHGLASL 454

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G+  I     C       P+     +         EY   D + T +
Sbjct: 455 AERHL--------GRKGINYEDLCGKGAKQIPFSQVSID------KAAEYSCEDSDQTLD 500

Query: 173 LFKRLIPLSDGE-------RDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERK 218
           + + L P  + +       R ++ L+         I   G  ID   + +    + Q   
Sbjct: 501 VHRTLWPRLEKDAQEGGKLRFIYELEIASSETLYRIERNGVLIDAPTLAQQSHELGQRIL 560

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L+++  +L      +      +    F   G+ +V  +  T         + +LA D  
Sbjct: 561 QLEQEAYELAGQPF-NLGSPKQIGEIFFGKLGLPIVKKT-ATGAPSTDEEVLEKLADDYP 618

Query: 279 LNRLASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L         + KL     + L++ A+   GR+         + TGR S      QN+P 
Sbjct: 619 LPAKILEHRGLSKLKGTYTDKLAQMALPGTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPI 677

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +                              VR   IA  G  +  AD + IE R++A +
Sbjct: 678 RT------------------------PEGRRVREAFIAPPGCLIASADYSQIELRIMAHL 713

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448
           +G+   + AF +G D++  T ++ F  P   V+ EQR   K +   L Y       AK  
Sbjct: 714 SGDAALLLAFHDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMSSYGLAKSL 773

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------------------- 488
               +     ++++         + D  +A +      +                     
Sbjct: 774 GIDNTAAKNYIERYFDRFAGVKRYMDETRASAKAKGYVETVFGRRLYLPEINSPNGPRRG 833

Query: 489 -YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
                A+   + GTA +L+K +  A          K + ++Q+  +L
Sbjct: 834 GAERAAINAPMQGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDEL 880



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMT 652
           Q  + D++   M       +A      +++ VHDE+V E P+     +   +  LM 
Sbjct: 845 QGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDELVFEVPENEVDWLKREVPKLMA 901


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/573 (18%), Positives = 187/573 (32%), Gaps = 108/573 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQY- 60
            +D ET S        + A+A  A +   + +                ++ +  DL+   
Sbjct: 370 AVDTETTS--------LDAFA--AELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLAR 419

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L   T + V  N  ++  +F    GI +    +  T + +             LA 
Sbjct: 420 MKSWLESATHLKVGQNLKYDSHIFANY-GITLKGVVF-DTLLESYVLESHLPHNMDSLAE 477

Query: 117 N-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   + EE        C   +    +D          ++  +Y   D + T  L  
Sbjct: 478 RHLGMKTIRYEEV-------CGKGVHQIGFD------QVDLKIATDYAAEDADITLRLHL 524

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P               E     +   +   G RID  L+ K  + + +   +L+ +I
Sbjct: 525 ELWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEI 584

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            KL      + +    +   LF    + ++  +     S      + +LA+D  L     
Sbjct: 585 HKLAGQPF-NIQSPKQIAEILFGQLELPVIKKTPSGAPST-DEEVLQKLAEDYPLPARIL 642

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              ++ KL       L        GR+        A  TGR +      QN+P +     
Sbjct: 643 DYRSLAKLMSTYIEKLPRMADPKTGRVHTNFSQATAV-TGRLASSDPNLQNIPVRT---- 697

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   I + G KL+ AD + IE R++A IA ++  
Sbjct: 698 --------------------EEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDENL 737

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AF +G+D++  T A+ F  P+D VS EQR   KV+   L Y       A       S 
Sbjct: 738 LTAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIECSA 797

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493
               + ++       + + +  + E+             LW           +      A
Sbjct: 798 AQNYIAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWSPEIKGSNGPRRQGAERAA 857

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
           +   + GTA +L+K A  A     ++ W +  +
Sbjct: 858 INAPMQGTAADLIKLAMIA-----VEDWFEKEQ 885


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 171/502 (34%), Gaps = 91/502 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D+ V+ +  N  ++ ++ K+  GI I           A   G   +     L+ 
Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIRCFDDTMLLSYALDAG-ALTHNMDALSE 499

Query: 117 NFSEHL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  H       +      I  F +  +                +    Y   D + T  
Sbjct: 500 RWLGHKPIAYKDLTHNGKKITSFAQVDL----------------KQATLYAAEDADITLR 543

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              +R L  +   + +RG  +D  ++L+L   +AQ    L+E
Sbjct: 544 LWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLRLSGELAQAAFILEE 603

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281
           +I +L       +     L   LF    +     ++   +   S   + +LA +  IL R
Sbjct: 604 EIYQLAGEKFNLA-SPKQLGGILFGKMSLPGGTRTKSG-QWSTSAQTLEELAAEGHILPR 661

Query: 282 LASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                  + KL     + L   + S  GR+         + TGR S      QN+P +  
Sbjct: 662 KIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSL-AITSTGRLSSSEPNLQNIPVRT- 719

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R+  IA  G  L+ AD + IE R+LA IA  
Sbjct: 720 -----------------------TEGRKIRTAFIAPKGHMLLSADYSQIELRILAHIADI 756

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
               +AFA G+DI+  T ++ F   I+ ++ + R   K +   + Y     G A      
Sbjct: 757 IALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIYGISAFGLANQLGLS 816

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                  +Q + +       + +                     + + ++ +L ++    
Sbjct: 817 RQEASHYIQLYFERFPGIKDYMEMTKNFACRNGYVETIFGRRIHYPEIKAANLQVRSFNE 876

Query: 491 EFAVKDKLIGTACELVKKAWRA 512
             A+   + G+A +++++A   
Sbjct: 877 RAAINAPIQGSAADIIRRAMIQ 898


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 184/555 (33%), Gaps = 99/555 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKIKVGQHAKFAINLLANCA--- 416

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +       T+ +    +        I+     
Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 589 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + + R   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++KKA  A +     
Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 863 SGLDARVILQVHDEL 877



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 110/612 (17%), Positives = 207/612 (33%), Gaps = 106/612 (17%)

Query: 1   MSKL---FIDIETRSPQPL--PKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAM 53
           M  L     D ET S  PL    VG+    E+           +DD             +
Sbjct: 366 MKTLDSFAFDTETTSLDPLEAKLVGISFSWEKGKGYYLPFPEDFDDA----------KNI 415

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
             +  +   +  +  + HN  ++  +  K  GI I  + +  T +               
Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY-GIRIDGENF-DTMIAHYLLNPDMRHNLDV 473

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L+  +  +  K    + LI +  K   +    D              EY   D + T +L
Sbjct: 474 LSETYLGY--KPVSIETLIGKKGKNQKNFREVDLIEQT---------EYGTEDSDVTFQL 522

Query: 174 FKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                P  +           E  L  +  T+   G R+D+D + +L +   ++ K+L++ 
Sbjct: 523 KNIFEPELEKVSLTKLFRNIEMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQK 582

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI----L 279
           I         +      L   LF    ++       T +       +++LA   I    L
Sbjct: 583 IFSEAGEEF-NLNSPKQLGDILFDKLKLEPKSKKTKTGQYSTGEEILSKLAHYPIIKNIL 641

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L E V+    R+  T     A+ TGR S      QN+P +     
Sbjct: 642 HYRQLQKLKSTYIDALPELVNPVTQRVHTTFAQTVAA-TGRLSSVNPNLQNIPIRT---- 696

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   IA     K++ AD + IE R++A +A +  
Sbjct: 697 --------------------EEGQQIRKAFIARNPEYKIISADYSQIELRLIAQMAQDPV 736

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            +KAF +GEDI+ +T AK F   +D+V++EQR+  K +   + Y     G A+      +
Sbjct: 737 MVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVSAFGLAQQTGLSNT 796

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  + +   +   + D + A +                      +  ++      
Sbjct: 797 EAKKLIDAYYETYPTLKKYIDQQIASARENGFVETLMRRRRYLKDINSRNNTVRSHAERN 856

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           AV   + G+A ++VK A        +Q+ K+L +      +    +    V + P   + 
Sbjct: 857 AVNAPIQGSAADIVKLAM-------IQIQKELDK--KFATKMLLQVHDELVFDAPISEVE 907

Query: 553 RHKRDVHIVLPS 564
              + +   + S
Sbjct: 908 EVSKMIKTTMES 919


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 106/577 (18%)

Query: 7   DIETRSPQPLPKV--GVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   L     G+   AE  QA      + +   P +L DRT+     + L   L 
Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQ---ALAQLAPLLT 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++                    +G      ++          
Sbjct: 410 DPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 469

Query: 123 TKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            K E+  GK     +F + S++    D TR            Y   D + T  L + L  
Sbjct: 470 VKYEDICGKGAKQIKFAQVSLE----DATR------------YAAEDADITLRLHQVLGK 513

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        D E  L  + + I   G  +D   + +    +++      +   +L 
Sbjct: 514 RLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 573

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L+  LF    +  V  +     S    + +  +A    L R+     +
Sbjct: 574 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILDYRS 631

Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L E +    GR+  +    GA+ TGR S      QN+P +         
Sbjct: 632 LAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 684

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G+KL+  D + IE R++A ++G+   + AF
Sbjct: 685 ------------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAF 726

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G D++  T A+ F   ID VS ++R   K +   L Y       A+            
Sbjct: 727 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 786

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           +  +         F +  + ++      +                          A+   
Sbjct: 787 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 846

Query: 498 LIGTACELVKKAWRAKHQ----------GVLQLWKDL 524
           + GTA +++K+A  +              +LQ+  +L
Sbjct: 847 MQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDEL 883



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 10/172 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 735 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 794

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 795 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 854

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M +             ++L VHDE+V E       + +  + + M+  
Sbjct: 855 IKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAA 906


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 106/577 (18%)

Query: 7   DIETRSPQPLPKV--GVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S   L     G+   AE  QA      + +   P +L DRT+     + L   L 
Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQ---ALAQLAPLLT 409

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V  +  +  ++  + ++                    +G      ++          
Sbjct: 410 DPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 469

Query: 123 TKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            K E+  GK     +F + S++    D TR            Y   D + T  L + L  
Sbjct: 470 VKYEDICGKGAKQIKFAQVSLE----DATR------------YAAEDADITLRLHQVLGK 513

Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        D E  L  + + I   G  +D   + +    +++      +   +L 
Sbjct: 514 RLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 573

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L+  LF    +  V  +     S    + +  +A    L R+     +
Sbjct: 574 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILDYRS 631

Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L E +    GR+  +    GA+ TGR S      QN+P +         
Sbjct: 632 LAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 684

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G+KL+  D + IE R++A ++G+   + AF
Sbjct: 685 ------------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAF 726

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            +G D++  T A+ F   ID VS ++R   K +   L Y       A+            
Sbjct: 727 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 786

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           +  +         F +  + ++      +                          A+   
Sbjct: 787 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 846

Query: 498 LIGTACELVKKAWRAKHQ----------GVLQLWKDL 524
           + GTA +++K+A  +              +LQ+  +L
Sbjct: 847 MQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDEL 883



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 10/172 (5%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
           A   ++ G   + V    R   + +          F    Q G G   A+    +     
Sbjct: 735 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 794

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YL+   +    +R    +   N  +Q  + DI
Sbjct: 795 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 854

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M +             ++L VHDE+V E       + +  + + M+  
Sbjct: 855 IKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAA 906


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 81/534 (15%), Positives = 166/534 (31%), Gaps = 95/534 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
                 L++   + +  N  F+ ++ +K    ++     +  +++A     P      + 
Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +EE      +  + S+ + P            +   EY   D + T +
Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADITLK 499

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L     P           +  E  L  +   +   G  +D   + +    +     KL++
Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +L      +   T  +   LF    +D       T     S   + +L     +   
Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 618

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L E ++   G++  +      + TGR S      QN+P     
Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395
                                      +R   I  N       AD + IE R++A ++G+
Sbjct: 673 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 713

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +G DI+  T AK +  P+++V+ + R   K     + Y     G A+     
Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S     +  +         + +                          SH+  ++    
Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
             A+   + G+A +++K A             K + +LQ+  +L         E
Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE 887


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 92/554 (16%), Positives = 181/554 (32%), Gaps = 102/554 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVM 67
                +  + +   A  A      + + D P +L   W           L   L++    
Sbjct: 365 YMEAQIVGISLCVAAGDACYIPLLHDYPDAPEQLNSQWAL-------EQLTPLLKNSKNQ 417

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKME 126
            V HN  F++ +     GI +    +  T + +     + +      L+L++  H     
Sbjct: 418 KVGHNLKFDKNVLANH-GITLNGVAY-DTMLESYVLNSVVTKHHIEALSLHYLGHSPITL 475

Query: 127 E---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
           E   GK      F +  +                     +   + +    L + L P   
Sbjct: 476 ESIAGKGAKQLTFNQIGL----------------AEAAPFAAENADIILRLHQLLWPQLV 519

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                   +S+ E  L  +   +   G  ID   + +  + +A+    L+E + ++    
Sbjct: 520 NAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILHLEETVHEMAGEA 579

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +   T  L+  LF    + ++  +     S      + +LA +  L +       + K
Sbjct: 580 F-NLGSTKQLQHILFEKMNLPVIKKTPKGAPST-GEEVLQELALNYPLPKAIMEYRGLTK 637

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + +    GR+  + Q    + TGR S      QN+P +            
Sbjct: 638 LKNTYTDKLPKLIDHRTGRVHTSYQ-QAITATGRLSSTDPNLQNIPIRT----------- 685

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR   IA  G K+V AD + IE R++A ++ +   + AFANG
Sbjct: 686 -------------EEGRKVREAFIARPGYKIVAADYSQIELRIMAHLSSDSGLLHAFANG 732

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
            D++  T ++ F   ++ V+ EQR   K +   L Y       AK            +  
Sbjct: 733 LDVHKATASEVFGVALEHVTSEQRRSSKAINFGLIYGMSAFGLAKQLNIPRGDAQHYMDT 792

Query: 462 FSQNVKST-STFEDWEQAESHHLWMQDQYPE--------------------FAVKDKLIG 500
           + +         +D  +      +++  +                       A+   + G
Sbjct: 793 YFERYPGVLQYMQDTREEAKAQGYVKTVFGRRLYLPEITSSNGARRAGAERAAINAPMQG 852

Query: 501 TACELVKKAWRAKH 514
           TA +++K +  A  
Sbjct: 853 TAADIIKLSMLAVD 866


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 171/498 (34%), Gaps = 93/498 (18%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
            D  V+ +  N  ++ ++ K+    DI  + +  T +L+        +     L+  + E
Sbjct: 447 EDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALDAGALTHNMDDLSERWLE 503

Query: 121 HL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           H       +      I  F +  +                +    Y   D + T  L++ 
Sbjct: 504 HKPIAYKDLTHNGKKITSFAQVDL----------------KQATLYAAEDADITLRLWQV 547

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              +R L  +   + +RG  +D  ++L+L   +AQ    L+E+I K
Sbjct: 548 LKPQLVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYK 607

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL-AKDLILNRLASS 285
             D     +     L   LF   G+     ++G  +   S   + +L A+   L R    
Sbjct: 608 QADEKFNLA-SPKQLGDILFDKMGLPGGAKTKGG-QWSTSAQTLEELSAEGHTLPRKIIE 665

Query: 286 GSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   +    GR+         + TGR S      QN+P +      
Sbjct: 666 WRQLAKLKSTYADALPSYILPKTGRVHTNYSL-AITSTGRLSSSEPNLQNIPVRT----- 719

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R+  IA  G  L+ AD + IE R+LA IA      
Sbjct: 720 -------------------AEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALK 760

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AFA G DI+  T ++ F   I+ +  + R   K +   + Y     G A          
Sbjct: 761 EAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEA 820

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
           G  +Q + +       + +                     + + ++ ++ ++      A+
Sbjct: 821 GRYIQLYFERFPGIKDYMEKTKSFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAI 880

Query: 495 KDKLIGTACELVKKAWRA 512
              + G+A +++++A   
Sbjct: 881 NAPIQGSAADIIRRAMIQ 898



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RR+ Y ++K     + +      R            +Q  + DI+   M          
Sbjct: 856 GRRIHYPEIKAKNVKIRSLN---ERAAINAP------IQGSAADIIRRAMIQMEDALKEE 906

Query: 621 --GYDIVLTVHDEIVSETP-DTPYFSVGTLCSLM 651
                ++L VHDE++ E P +    ++  +  +M
Sbjct: 907 NLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVM 940


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 96/561 (17%), Positives = 190/561 (33%), Gaps = 97/561 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62
             D ET S   L        A    ITLCA   +          E   +    L  LR  
Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406

Query: 63  --DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             D  +  V  N  ++  +  +     I  +  +  +++A     P          +   
Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFP----------DLRH 453

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ-AWQLFGEYCKRDVEATRELFKRLIP 179
           ++ +M E   L+        D    D    +  Q   Q   +Y   D + T +L++RL  
Sbjct: 454 NMDEMAE--TLLGYCTVHYSDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNA 511

Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           +             E  L  +   +   G ++D +++ +    + +E ++++++I +L  
Sbjct: 512 MLSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLAG 571

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +   LF    I        +     +   + +L +   + RL      I
Sbjct: 572 HSF-NINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYRGI 630

Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            KL       L E    DG+L  +     A+ TGR S      QN+P +           
Sbjct: 631 KKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRT---------- 679

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R+  +  N     + AD + IE R++A ++ ++  I+AF 
Sbjct: 680 --------------EVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFL 725

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +GEDI+  T +K +  P+ +V+ + R   K     + Y     G ++      +     +
Sbjct: 726 HGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTEAKALI 785

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKL 498
           + +  +      + D   AE+                         ++      A+   +
Sbjct: 786 EGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNAINAPI 845

Query: 499 IGTACELVKKAWRAKHQGVLQ 519
            G+A +L+K A    H+ + +
Sbjct: 846 QGSAADLIKLAMIRIHEEITE 866


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/563 (14%), Positives = 176/563 (31%), Gaps = 105/563 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
                 L++   + +  N  F+ ++ +K    ++     +  +++A     P      + 
Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +EE      +  + S+ + P            +   EY   D + T +
Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADITLK 499

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L     P           +  E  L  +   +   G  +D   + +    +     KL++
Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQ 559

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +L      +   T  +   LF    +D       T     S   + +L     +   
Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 618

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L E ++   G++  +      + TGR S      QN+P     
Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395
                                      +R   I  N       AD + IE R++A ++G+
Sbjct: 673 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 713

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +G DI+  T AK +  P+++V+ + R   K     + Y     G A+     
Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S     +  +         + +                          SH+  ++    
Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + G+A +++K A             K + +LQ+  +L         E      
Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE------ 887

Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563
                V ++V+   +  + + +P
Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 98/550 (17%), Positives = 185/550 (33%), Gaps = 102/550 (18%)

Query: 52  AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
            +P D     L  +L D +   + H++ ++  +F    GI +       T + A      
Sbjct: 418 QLPKDEVLARLRPWLEDASRAKLLHHAKYDTHVFANE-GIRLAGIA-EDTMLQAYVLESH 475

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +    LA  +         G++ ++    C        +D    +        G Y  
Sbjct: 476 RGVGLNDLAQRYL--------GRSGVSYEDLCGKGAKQIGFDEVAVD------KAGHYAA 521

Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T +L + L P          +   E  +  +  TI   G ++D   + +    + 
Sbjct: 522 EDADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLG 581

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           QE  +L++   +L      +      L   LF    + +V  + G   S      +++LA
Sbjct: 582 QEMLQLEQKAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPST-DEEVLSKLA 639

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328
           +D  L ++      + KL     + L   ++ D GR+        A  TGR +      Q
Sbjct: 640 QDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYS-QAAVITGRLASSDPNLQ 698

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +  +                           VR   IA  G  L+ AD + IE R+
Sbjct: 699 NIPVRTEA------------------------GRRVREAFIAEQG-LLLSADYSQIELRI 733

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           +A ++ +    +AFA GEDI+  T ++ F   +  VS EQR   K +   L Y  G    
Sbjct: 734 MAHVSDDANLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINFGLIYGMGVFGL 793

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------- 488
           A             + ++       + + +  +  +      +                 
Sbjct: 794 ASNLGITRDAAQAYIDRYFARYPGVAMYMENTRRVAREQGYVETVFGRRLQLPEIRGASG 853

Query: 489 -----YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQ 533
                    A+   + GTA +L+K A  A          + + ++Q+  +L         
Sbjct: 854 PRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDAEL 913

Query: 534 EGGSISARRV 543
           E    +  R+
Sbjct: 914 ELVKQTLPRL 923


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/555 (16%), Positives = 179/555 (32%), Gaps = 108/555 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + +   P +L        +   L   L+D     +  +  ++  + ++     
Sbjct: 376 AAYIPVGHDYPGAPAQLP----MQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRH---G 428

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSID 141
           +  + +   ++L     N   +      LAL +  + T   +   GK      F +  ID
Sbjct: 429 VDVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGID 488

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLL 190
                               Y   D + T  L + L P             D E  L  +
Sbjct: 489 EASR----------------YAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPV 532

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
             TI   G RID D + +  + ++       +   +L      +      L+  LF    
Sbjct: 533 LTTIEANGVRIDTDELRRQSQDLSSRMLAAQQKATELAGRSF-NLDSPKQLQAVLFDELK 591

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           +  V  +     S    + +  +A+   L R+      + KL     + L E V+   GR
Sbjct: 592 LPAVVKTPKGQPSTNEEA-LEAIAEQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGR 650

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +    GA+ TGR S      QN+P +                              +
Sbjct: 651 VHTSYHQSGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 685

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G +L+ AD + IE R++A ++ +   ++AF  G D++  T A+ F   +++V
Sbjct: 686 RRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEEV 745

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475
           +  +R   K +   L Y       A+            +  +         F +      
Sbjct: 746 TPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRYPGVRDFMERMRQQA 805

Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515
                               + +  ++      A+   + GTA +++K+A     Q    
Sbjct: 806 RDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRD 865

Query: 516 ------GVLQLWKDL 524
                  +LQ+  +L
Sbjct: 866 SGAPARMILQVHDEL 880



 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F      G  I   +  +   L   
Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQAQDYVALYFS 789

Query: 553 RHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+         +   +  +     + G   YLN   ++    R    +   N  +Q  + 
Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849

Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           DI+   M +  +          ++L VHDE+V ET  +    +   +   M++ 
Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQA 903


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score =  266 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPEKIKVGQHAKFAINLLANCA--- 416

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +        + +    +        I+     
Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTAPRHDRDSLVAKYLTHTPINFQEIA 469

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 589 PVLSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + + R   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++KKA  A +     
Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 863 SGLDARVILQVHDEL 877



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score =  266 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 95/581 (16%), Positives = 186/581 (32%), Gaps = 94/581 (16%)

Query: 5   FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +D ET    P+    VG+ ++YAE     +        PV   DR E   + ++     
Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRAEAQKIVNEFRPAF 452

Query: 62  RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             E V+ V  N  ++ ++             D     ++    L       + +      
Sbjct: 453 EKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++  E +    +G+  +      +I     +           L  E    D E       
Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   +   G R+D + + +  E       +++E++ +L       +
Sbjct: 566 KLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                +   LF    I        T + + S   +  L     +         + KL   
Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682

Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   G++  +      + TGR S      QN+P +                
Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+
Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T AK +   IDKV++EQR+  K     + Y     G A+            +  + + 
Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                          S +  ++      A+   + G A +
Sbjct: 838 YPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGGAAD 897

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           ++K A    +Q           +LQ+  +L        +E 
Sbjct: 898 IIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCA--- 416

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +       T+ +    +        I+     
Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 589 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + + R   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++KKA  A +     
Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 863 SGLDARVILQVHDEL 877



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 13/165 (7%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGT 646
           DI+ + M        ++G D  ++L VHDE+V E  +     V  
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVSE 891


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/563 (15%), Positives = 176/563 (31%), Gaps = 105/563 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
                 L++   + +  N  F+ ++ +K    ++     +  +++A     P      + 
Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +EE      +  + S+ + P            +   EY   D + T +
Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADVTLK 499

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L     P           +  E  L  +   +   G  +D   + +    +     KL++
Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +L      +   T  +   LF    +D       T     S   + +L     +   
Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGK 618

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L E ++   G++  +      + TGR S      QN+P     
Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395
                                      +R   I  N       AD + IE R++A ++G+
Sbjct: 673 -------------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGD 713

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +G DI+  T AK +  P++KV+ + R   K     + Y     G A+     
Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S     +  +         + +                          SH+  ++    
Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + G+A +++K A             K + +LQ+  +L         E      
Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNIYKEEAE------ 887

Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563
                V ++V+   +  + + +P
Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906


>gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 377

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 187/374 (50%), Gaps = 46/374 (12%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F +Y +RDV A R++ KRL     +  E  LW LDQTINDRG  +D DL       +
Sbjct: 3   WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + ++ L E    LT G+++++ Q  AL  +L    G+ L DM + T++  L    + + 
Sbjct: 63  ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+E +T  I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242

Query: 391 WIAGEDWKIKAF----------------------------------------ANGEDIYV 410
           W+AGE  K+ AF                                          G+DIY 
Sbjct: 243 WLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYK 302

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             YA +F      V+K+QR IGKV ELALGY GG   F   A+   +DL+  +       
Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAIAGYYPPPI 362

Query: 471 TFEDW-EQAESHHL 483
           +  +     + HH 
Sbjct: 363 STHETAPPHQPHHR 376


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/554 (18%), Positives = 190/554 (34%), Gaps = 81/554 (14%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D+ET +       L  + +    +++      +   D  + +        +   L  +
Sbjct: 331 ALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDI------EQVLQRLAPF 384

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LR       AH+  ++ ++ ++             T + A   G           L F++
Sbjct: 385 LRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLG---ENAVGLKELAFTK 439

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
              +MEE   LI R  K  +     +  R           +Y   DVEAT  L + L P 
Sbjct: 440 LGWEMEEITELIGR-GKKQLTMDRAEIARVT---------QYACADVEATYRLVEVLRPQ 489

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                     ++ E  L  +   +   G  ID+  + +L  ++  +   L+  I +L   
Sbjct: 490 LEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELAGH 549

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
            + +      L   LF   G+     ++      + +L +   T    + IL        
Sbjct: 550 PL-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLLKL 608

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L   V    GR+        A+ TGR S      QN+P +      + +   A
Sbjct: 609 KSTYVDALPRQVHPQTGRVHTIFHQTVAA-TGRLSSSDPNLQNIPARGELGLAVRRAFIA 667

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
            NR                   IA     L+  D + IE R++A  + +   ++AFA G+
Sbjct: 668 DNRPGYR---------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T ++ F  P+D V+ E R I KV+   + Y     G A+            ++ +
Sbjct: 713 DIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAY 772

Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501
            Q     + + +  +  +  L                       +      AV   L GT
Sbjct: 773 FQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGT 832

Query: 502 ACELVKKAWRAKHQ 515
           A +++K A  A H+
Sbjct: 833 AADIMKLAMIAVHR 846



 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598
           A+R             R +      +  L Y +   G   YL   TS     R    ++ 
Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMA 824

Query: 599 ENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SL 650
            N+ +Q  + DI+   M    +     G    ++L VHDE+V E P++   +   L  + 
Sbjct: 825 VNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTELVTTR 884

Query: 651 MTKN--------------PSWAK 659
           M++               P+WA 
Sbjct: 885 MSRVVELSVPLEVDAKAGPNWAD 907


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 166/558 (29%), Gaps = 79/558 (14%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET    P    L  + V     +A      +  +D P        +   P      
Sbjct: 343 AIDTETTGLNPRHAKLVGISVATAPGRAAYVPLGH--EDGPQLPRPLALERLAPV----- 395

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D +++ + HN+ F+  + ++    D                G      +   AL+   
Sbjct: 396 LADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDH 455

Query: 121 HLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                +E          F    ID           V          +   EA   L++ +
Sbjct: 456 RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAALALYETM 515

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 ER L  +   +   G  +D   +  +    A+    +  +I KL      +   
Sbjct: 516 ------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLAGRAF-NPGS 568

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILK 291
              L   LF   G+     ++ T       + + +LA         +L            
Sbjct: 569 PKQLGEILFDEMGLPGGKRTK-TGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTY 627

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            + L   +  +D R+  +      + TGR S      QN+P +                 
Sbjct: 628 ADALVGEIDIADQRVHTSFS-QAITTTGRLSSNEPNLQNIPIRT---------------- 670

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   IA+ GK L+ AD + IE R+LA +A      ++FA GEDI+ 
Sbjct: 671 --------SEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHA 722

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
            T A+ F  P++ +    R   K +   + Y     G A+      S     +  +    
Sbjct: 723 RTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARY 782

Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505
                + +     +                      +   +      A+   L G A ++
Sbjct: 783 PEIRRYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADI 842

Query: 506 VKKAWRAKHQGVLQLWKD 523
           +K+A       +     D
Sbjct: 843 IKRAMVRLPAAIRDAGLD 860



 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 68/219 (31%), Gaps = 23/219 (10%)

Query: 456 GLDLQQFSQNVKSTSTFE-DWEQAESHHLWMQDQYPEFAVK-----DKLIGTACELVKKA 509
           G  +++        +    D+ Q E   L      P          D    TA E+    
Sbjct: 673 GARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLP 732

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMRRHKRDVHIV 561
                  V +  K +  G    +   G           A+R  +         +R ++  
Sbjct: 733 MEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNET 792

Query: 562 LPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKN--- 616
              +R   Y     G   Y+   T +    R Y  +   N  +Q  + DI+   M     
Sbjct: 793 AEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPA 852

Query: 617 -ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL-CSLM 651
                G D V+   VHDE+V E P     +   L C++M
Sbjct: 853 AIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVM 891


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/610 (17%), Positives = 201/610 (32%), Gaps = 87/610 (14%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D+ET +       L  + +    +++      +   D  + +        +   L  +
Sbjct: 331 ALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDI------EQVLQRLAPF 384

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LR       AH+  ++ ++ ++             T + A   G           L F++
Sbjct: 385 LRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLG---ENAVGLKELAFTK 439

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
              +MEE   LI R  K  +     +  R           +Y   DVEAT  L + L P 
Sbjct: 440 LGWEMEEITELIGR-GKKQLTMDRAEIARVT---------QYACADVEATYRLVEVLRPQ 489

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                     ++ E  L  +   +   G  ID+  + +L  ++  +   L+  I +L   
Sbjct: 490 LEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELAGH 549

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF   G+     ++      + +L +   T    + IL        
Sbjct: 550 PF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLLKL 608

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L   V    GR+        A+ TGR S      QN+P +      + +   A
Sbjct: 609 KSTYVDALPRQVHPQTGRVHTIFHQTVAA-TGRLSSSDPNLQNIPARGELGLAVRRAFIA 667

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
            NR                   IA     L+  D + IE R++A  + +   ++AFA G+
Sbjct: 668 DNRPGYR---------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T ++ F  P+D V+ E R I KV+   + Y     G A+            ++ +
Sbjct: 713 DIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAY 772

Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501
            Q     + + +  +  +  L                       +      AV   L GT
Sbjct: 773 FQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGT 832

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           A +++K A  A H+         ++   + +     V E    +   +       +    
Sbjct: 833 AADIMKLAMIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVELS 892

Query: 556 RDVHIVLPSS 565
             + +   + 
Sbjct: 893 VPLEVDAKAG 902



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598
           A+R             R +      +  L Y +   G   YL   TS     R    ++ 
Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMA 824

Query: 599 ENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SL 650
            N+ +Q  + DI+   M    +          ++L VHDE+V E P++   +   L  + 
Sbjct: 825 VNMPLQGTAADIMKLAMIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTTELVTTR 884

Query: 651 MTKN--------------PSWAK 659
           M++               P+WA 
Sbjct: 885 MSRVVELSVPLEVDAKAGPNWAD 907


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/563 (16%), Positives = 188/563 (33%), Gaps = 101/563 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62
             D ET S   L        A    ITLCA   +          E   +    L  LR  
Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406

Query: 63  --DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             D  +  V  N  ++  +  +     I  +  +  +++A     P          +   
Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFP----------DLRH 453

Query: 121 HLTKMEE---GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           ++ +M E   G   I        D       +       Q   +Y   D + T +L++RL
Sbjct: 454 NMDEMAETLLGYRTIHYSDLVGSDKQEVHIRQV----PLQNLADYAMEDADITWQLYERL 509

Query: 178 IPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             +             E  L  +   +   G ++D +++ +    + +E ++++++I +L
Sbjct: 510 NAMLSEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYRL 569

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      +   LF    I        +     +   + +L +   + RL     
Sbjct: 570 AGHSF-NINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYR 628

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            I KL       L E    DG+L  +     A+ TGR S      QN+P +         
Sbjct: 629 GIKKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRT-------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R+  +  N     + AD + IE R++A ++ ++  I+A
Sbjct: 680 ----------------EVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQA 723

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +GEDI+  T +K +  P+ +V+ + R   K     + Y     G ++      +    
Sbjct: 724 FLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTEAKA 783

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496
            ++ +  +      + D   AE+                         ++      A+  
Sbjct: 784 LIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNAINA 843

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            + G+A +L+K A    H+ + +
Sbjct: 844 PIQGSAADLIKLAMIRIHEEITE 866


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/589 (16%), Positives = 199/589 (33%), Gaps = 108/589 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQSAM 53
            ID ET S         +  AE            A     A+ +   P +L     +  +
Sbjct: 348 AIDTETTSLD-------YRVAEMVGFSVAFDAKDAYYVPLAHDYAGAPEQL----NREQV 396

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKN 111
            + +   L ++ V  + H+  ++  +F       I  K W   ++LA    N + +    
Sbjct: 397 LAQIKPILENDQVEKIGHHLKYDAHIFANH---GIELKGWFFDTMLASYVLNSVATRHGM 453

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +A  +  HLT   E  A      KG+         ++ +    ++   Y   D   T 
Sbjct: 454 DDVARLYLSHLTTTFEQVA-----GKGAKQ-------KSFNQIELEVASPYAAEDAHVTY 501

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L++ L             L + E  +  +   + + G R+D   + +L    A+  ++L
Sbjct: 502 RLYEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTMQEL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD---L 277
           ++  +++       +     +   LF   GI     +  T +   S S + ++      +
Sbjct: 562 EQQAMEMAGETFNIA-SPKQVGEVLFEKLGIKGGKKT-TTGQFSTSESILEKIEHPIAAV 619

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           IL   + +       + L +  ++      T      + TGR S      QN+P +    
Sbjct: 620 ILEHRSLAKLKSTYTDALVKQSNNSTHRVHTSYHQALTATGRLSSSDPNLQNIPIR---- 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                               G     +R   IA  G+ L+ AD + IE R++A  + +D 
Sbjct: 676 --------------------GEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHFSQDDA 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF +G+D++  T A+     ++ V+ +QR   K +   L Y        +       
Sbjct: 716 LLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQ 775

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++Q+         +                           ++ ++ ++      
Sbjct: 776 ESQDYIKQYFHRYPGIYEYMQRTRQLALEQGFVDTLFGRRLYTPDIDARNMMVRKAAERA 835

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           A+   L G+A +++K A  A  + +     +L   + +     V E  +
Sbjct: 836 AINAPLQGSAADIIKLAMIAVDKILPKDQARLLLQVHDELVFEVDENIA 884



 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 603 QAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           Q  + DI+   M    K    +   ++L VHDE+V E  +     +   L  +M
Sbjct: 842 QGSAADIIKLAMIAVDKILPKDQARLLLQVHDELVFEVDENIADELAPQLAEVM 895


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/588 (17%), Positives = 196/588 (33%), Gaps = 99/588 (16%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            ++ +D ET S  P    L  + +   A +AV     + + ++ +  W       +   L
Sbjct: 353 EQIGLDTETTSLDPMNARLVGISMAFAAGEAVYIPINHTFAEQQLS-W-----ETLLGSL 406

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             YL  +T++ +  N  +++ +F    GI +         + +             LA  
Sbjct: 407 KPYLESKTLLKIGQNLKYDQHVFANH-GIQLQGIA-GDAMLASYVLESHLGHGLDELAQR 464

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +    T   E        C        +           +   EY  +D +    +   L
Sbjct: 465 WLGLETITYES------LCGKGAKQISFADVSV------EQATEYACQDADFALRIEAHL 512

Query: 178 I---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        + E  +  +   +   G  ID   + +    +  E  KL++    L 
Sbjct: 513 KAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLKLEQQAYDLA 572

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGS 287
                +      L+  LF   GI    + + +  SI  + + + QLA D  L ++     
Sbjct: 573 GQPF-NLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYPLPKIILQNR 631

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ KL     + L E ++ +     T      + TGR +      QN+P +         
Sbjct: 632 SLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVAITGRLASNNPNLQNIPIRT-------- 683

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR   IA     +V AD + IE R++A ++G+   I+AF
Sbjct: 684 ----------------SEGRRVRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAF 727

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            NGED++  T A+ F    + ++ EQR   K +   L Y       AK      +   + 
Sbjct: 728 KNGEDVHRRTAAEVFGMQPENITPEQRRYAKTINFGLIYGMSSYGLAKSLGIDNASADMF 787

Query: 459 LQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDK 497
           ++++       + +    + +                     + +   +      A+   
Sbjct: 788 IKRYFARYTGVADYMQRTKEQAADLGYVETLFGRRLYLPDIHAKNAQARAGAERAAINAP 847

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
           + GTA +L+K+A  A          K +  +Q+  +L        QE 
Sbjct: 848 MQGTASDLIKRAMIAVDDFLLSGSLKTRLTMQVHDELVLEVPKSEQER 895


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/584 (16%), Positives = 185/584 (31%), Gaps = 114/584 (19%)

Query: 5   FIDIETRSPQPL----------PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            +D ET S  P+           +VG  AY          + +   PV+L    ++    
Sbjct: 346 ALDTETDSLDPMQAVLIGLSFASEVGCAAY------LPFGHDYPGAPVQL----DRGQAL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L   L D  V  V  +  ++  + ++   +               T+G      +   
Sbjct: 396 ALLQPLLEDPAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLA 455

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +      K       +    KG+   P             Q   +Y   D + T  L 
Sbjct: 456 RRHLGYETMKY------VDLVGKGAKQIPFSHVGV-------QEATQYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L P             + E  L  + + I   G +ID + + K    +++      + 
Sbjct: 503 CVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            + L      +      L++ LF    + +V  +     S    + +  +     L R+ 
Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL       L E +    GR+       GA+ TGR S      QN+P +    
Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A +G+KL+  D + IE R++A ++G+  
Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF +G D++    A+ F   ID+V+  +R   K +   L Y       A+       
Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492
                +  +         F +  + ++      +                          
Sbjct: 776 EAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835

Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524
           A+   + GTA +++K+A             R +   +LQ+  +L
Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879



 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551
           A+  ++ G   + V    R   + +          F    Q G S   A+    +     
Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YLN+  S    +R    +   N  +Q  + DI
Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M          G+     ++L VHDE+V E  +    + V  + + M   
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/590 (17%), Positives = 193/590 (32%), Gaps = 98/590 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
            +D ET S   +    V         E A I   A+A+ D P +L    +   + + L  
Sbjct: 384 ALDTETTSLDEMRAQIVGISFSVTPGEAAYI-PLAHAYPDAPAQL-PLAD---VLAKLKP 438

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           +L+D +   +  +  ++R +F    GI++       T + +    +      A LA    
Sbjct: 439 WLQDASHKKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLASLAER-- 494

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                +          C    +   +D              +Y   D + T ++ + L P
Sbjct: 495 ----HLGRSGISFEDLCGKGANQICFDQVDI------AQAAQYSCEDSDMTLDVHRALWP 544

Query: 180 L---SDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L   +D  R ++ L+         I   G  ID   +      + Q   +L+++  +L  
Sbjct: 545 LLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQLEKEAHELAG 604

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                S     +    F   G+ +V  +  T         + +LA+D  L         +
Sbjct: 605 QPFNLS-SPKQIAEIFFTKLGLPVVKKTP-TGSPSTDDEVLQKLAEDYPLPAKILEHRGL 662

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L++      GR+        A  TGR S      QN+P +          
Sbjct: 663 AKLKGTYTDKLAQLAHPRTGRVHTHYAQAIAV-TGRLSSLEPNLQNIPVRT--------- 712

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR   +A  G  +  AD + IE R++A I+G+   + AF 
Sbjct: 713 ---------------PEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGDAALLLAFH 757

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           +G D++  T ++ F     +V+ EQR   KV+   L Y       AK      +     +
Sbjct: 758 DGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSAYGLAKALSIDNTAAKNYI 817

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498
           +++         + +  +A +      +                          A+   +
Sbjct: 818 ERYFDRYPGVKNYMEHTRALAKRQGYVETVFGRRLYLPEINSPNGPRRSGAERAAINAPM 877

Query: 499 IGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARR 542
            GTA +L+K +     Q +       ++   + +     V E      R 
Sbjct: 878 QGTAADLIKLSMVKVQQVIDEEKRATKMIMQVHDELVFEVPESEIDWVRH 927


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/555 (16%), Positives = 177/555 (31%), Gaps = 108/555 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + +   P +L        +   L   L+D     +  +  ++  + ++     
Sbjct: 376 AAYIPVGHDYPGAPAQLP----MQQVLDALRSVLQDPAKKKLGQHGKYDLHVLRRH---G 428

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSID 141
           +  + +   ++L     N   +      LAL +  + T   +   GK      F +  ID
Sbjct: 429 VQVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGID 488

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLL 190
                               Y   D + T  L   L P               E  L  +
Sbjct: 489 EASR----------------YAAEDADITLRLHHALQPQLLAEPALDSVYRGIEMPLVPV 532

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
             +I   G R+D D + +  + ++       +   +L      +      L+  LF    
Sbjct: 533 LASIEANGVRVDTDELRRQSQDLSSRMLAAQQKATELAGRSF-NLDSPKQLQAVLFDELK 591

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GR 304
           +  V  +     S    + +  +A    L R+      + KL     + L E V+ D GR
Sbjct: 592 LPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGR 650

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +    GA+ TGR S      QN+P +                              +
Sbjct: 651 VHTSYHQSGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 685

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G +L+ AD + IE R++A ++ +   ++AF  G D++  T A+ F   +++V
Sbjct: 686 RRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEEV 745

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475
           +  +R   K +   L Y       A+            +  +         F +      
Sbjct: 746 TPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRYPGVRDFMERMRQQA 805

Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515
                               + +  ++      A+   + GTA +++K+A     Q    
Sbjct: 806 RDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRD 865

Query: 516 ------GVLQLWKDL 524
                  +LQ+  +L
Sbjct: 866 SGAPARMILQVHDEL 880



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F      G  I   +  +   L   
Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQAQDYVALYFS 789

Query: 553 RHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+         +   +  +     + G   YLN   ++    R    +   N  +Q  + 
Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849

Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           DI+   M +  +          ++L VHDE+V ET  +    +   +   M++ 
Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQA 903


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/554 (18%), Positives = 189/554 (34%), Gaps = 81/554 (14%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D+ET +       L  + +    +++      +   D  + +        +   L  +
Sbjct: 331 ALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDI------EQVLQRLAPF 384

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LR       AH+  ++ ++ ++             T + A   G           L F++
Sbjct: 385 LRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLG---ENAVGLKELAFTK 439

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
              +MEE   LI R  K  +     +  R           +Y   DVEAT  L + L P 
Sbjct: 440 LGWEMEEITELIGR-GKKQLTMDRAEIARVT---------QYACADVEATYRLVEVLRPQ 489

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                     ++ E  L  +   +   G  ID+  + +L  ++  +   L+  I +L   
Sbjct: 490 LEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELAGH 549

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF   G+     ++      + +L +   T    + IL        
Sbjct: 550 PF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLLKL 608

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L   V    GR+        A+ TGR S      QN+P +      + +   A
Sbjct: 609 KSTYVDALPRQVHPQTGRVHTIFHQTVAA-TGRLSSSDPNLQNIPARGELGLAVRRAFIA 667

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
            NR                   IA     L+  D + IE R++A  + +   ++AFA G+
Sbjct: 668 DNRPGYR---------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T ++ F  P+D V+ E R I KV+   + Y     G A+            ++ +
Sbjct: 713 DIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAY 772

Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501
            Q     + + +  +  +  L                       +      AV   L GT
Sbjct: 773 FQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGT 832

Query: 502 ACELVKKAWRAKHQ 515
           A +++K A  A H+
Sbjct: 833 AADIMKLAMIAVHR 846



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598
           A+R             R +      +  L Y +   G   YL   TS     R    ++ 
Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMA 824

Query: 599 ENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SL 650
            N+ +Q  + DI+   M    +     G    ++L VHDE+V E P++   +   L  + 
Sbjct: 825 VNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTELVTTR 884

Query: 651 MTKN--------------PSWAK 659
           M++               P+WA 
Sbjct: 885 MSRVVELSVPLEVDAKAGPNWAD 907


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +         K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 180/557 (32%), Gaps = 102/557 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----R 62
           D ET S   L          +A +   A ++  +       T        +L  L     
Sbjct: 379 DTETTSLNAL----------EAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPAFE 428

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLA-LNF 118
             ++  V  N  ++ ++ KK    +      +  ++LA     P     +       LN+
Sbjct: 429 KSSITKVGQNLKYDLLVLKKY---NFAIAGPLFDTMLAHYLLEPEMRHGMDTLAEVYLNY 485

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           +    +   GK       KG+      D          +   EY   D + T +L+K   
Sbjct: 486 TPVSIEQLIGK-------KGAKQGTMRDVEI-------EAIKEYAAEDADITFQLYKFFS 531

Query: 179 PL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           PL          ++ E  L  +   +   G +ID   + +   L+  E   ++++I +  
Sbjct: 532 PLVKDQNLNPLFNEVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHA 591

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L   LF    +D       T +       +T+L  D  +         
Sbjct: 592 GVQF-NISSPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANILDYRE 650

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
             KL     + L   +  DGR+  +      + TGR S      QN+P +          
Sbjct: 651 FQKLKSTYVDALPLLLGKDGRVHTSFN-QAVAATGRLSSTNPNLQNIPIRTDR------- 702

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +A +    ++ AD + IE R++A  + ++  + AF
Sbjct: 703 -----------------GKEIRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAF 745

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
             G DI+ TT +K F  PI+ V+ + R   K++   + Y     G ++            
Sbjct: 746 RKGVDIHSTTASKVFKVPIEDVTADMRRKAKMVNFGIIYGISAFGLSQRLSIPRKEAAEI 805

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           +  +     +   + D                          S ++ M+      A+   
Sbjct: 806 ITAYFTEFPAVKAYMDACVNSAREVEYVETILGRRRFLRDINSRNMTMRGFAERNAINAP 865

Query: 498 LIGTACELVKKAWRAKH 514
           + G+A +++K A    H
Sbjct: 866 IQGSAADMIKVAMIRIH 882


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/562 (16%), Positives = 184/562 (32%), Gaps = 102/562 (18%)

Query: 1   MSKLFI------DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQ 50
           +S+LFI      D ET         G+  +    V     +A  +          D+TE 
Sbjct: 370 ISQLFIQKSVCFDTET--------TGLDMFTSDLVGMSFCFA--EGEAYYVSLPEDKTES 419

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSL 109
             +  +   +  ++ +  +  N  F+ ++        I  K  +  +++A     P    
Sbjct: 420 KEVLREFKAFFENDRIEKIGQNMKFDLLML---WQYGIELKGKLFDTMIAHYLVQPELRH 476

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               LA  +  + T   E   L+    K   D    D  +           +Y   D + 
Sbjct: 477 GMDYLAEIYLNYRTIHFE--DLVGAKGKNQADIRTVDINK---------LCDYAAEDADV 525

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L + L              + E  L  +  T+   G RID + + +   ++  E  K
Sbjct: 526 TFRLKQILEKELKADALENLFYEIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLK 585

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+++I +L      +      +   LF    +D       T +   S   + +L     +
Sbjct: 586 LEKEIHQLAGYEF-NVSSPMQVGEILFDRLKLDDKAKKTKTGQYSTSEDILEKLQSKHPI 644

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                    + KL     + L + +S   G++  +     A+ TGR S      QN+P +
Sbjct: 645 IGKILDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVAA-TGRLSSTNPNLQNIPIR 703

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I         AD + IE R++A ++
Sbjct: 704 ------------------------DAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLS 739

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           G+   ++AF +G DI+  T AK +  P+++V+ + R   K     + Y     G +    
Sbjct: 740 GDKNMLEAFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISVFGLSDRLS 799

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQ 488
              +     ++ +         + D    ++  +                      ++  
Sbjct: 800 IPRAEAKELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGRKRFLPDINSQNSIVRGF 859

Query: 489 YPEFAVKDKLIGTACELVKKAW 510
               A+   + GTA +++K A 
Sbjct: 860 AERNAINAPIQGTAADIIKIAM 881


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +         K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/589 (17%), Positives = 186/589 (31%), Gaps = 109/589 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSDLL 58
           L ID ET   +P+    V      A     AY     A  DE +K+          ++L 
Sbjct: 381 LSIDTETTGTEPMEAELVGMSFSDAENR--AYYVPVPANRDEALKIV---------NELR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLAL 116
               +E  M V  N  ++ I+ +   G+ +  K  +  ++LA     P      +    +
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEI 486

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                   ++E   LI    K   +        A  V        Y   D + T +L   
Sbjct: 487 YLQYQTIHIDE---LIGARGKNQKNM---RDLPAEDV------YRYACEDADVTLKLKNV 534

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L              + E  L  +   I   G RID + + +  E      ++++++I  
Sbjct: 535 LEKELKEQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYA 594

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L  G   +      +   LF    I        T + + S   +  L     +       
Sbjct: 595 LAGGETFNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILEY 654

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + ++   GR+  +      + TGR S      QN+P +       
Sbjct: 655 RGLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------- 706

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   I  +G +   AD + IE R++A ++ +   I 
Sbjct: 707 -----------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +G DI+  T AK +   I+ V+ + R   K     + Y     G A+          
Sbjct: 750 AFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAERMNVPRQEAK 809

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             +  + +       + D                          S +  ++      A+ 
Sbjct: 810 ELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 869

Query: 496 DKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
             + G+A +++K A     Q           +LQ+  +L        +E
Sbjct: 870 APIQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSVPEAEKE 918


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +         K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%)

Query: 5   FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +D ET    P+    VG+ ++YAE     +        PV   DRTE   + ++     
Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452

Query: 62  RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             E  + V  N  ++ ++             D     ++    L       + +      
Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++  E +    +G+  +      +I     +           L  E    D E       
Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   I   G R+D + + +  E       +++E++ +L       +
Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                +   LF    I        T + + S   +  L     +         + KL   
Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682

Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   G++  +      + TGR S      QN+P +                
Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+
Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T AK +   IDKV++EQR+  K     + Y     G A+            +  + + 
Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                          S +  ++      A+   + G+A +
Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           ++K A    +Q           +LQ+  +L        +E 
Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/535 (15%), Positives = 164/535 (30%), Gaps = 92/535 (17%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTSVLARTNGLPSSLKNACLALNF 118
           +D+ V+ + HN+ F+ ++     GI + S            +++ GL     +    L+ 
Sbjct: 445 QDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSNLHL 503

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           +      +          +      P            +   +Y   D + T  L+  L 
Sbjct: 504 NHTPITYDSVTGTGR--NRVPFAQVPV-----------ETATKYAAEDADVTLRLWYVLH 550

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P              ER L ++   +   G  +D   + +L +      + ++ DI +  
Sbjct: 551 PTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEARMQGMENDIYEAA 610

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRL 282
                +      L   LF   G+      +         S +  LA         IL   
Sbjct: 611 GRQF-NIGSPKQLGEILFDEMGLKGGKRGKAG-AWSTDSSVLQDLADQGHDLPARILAWR 668

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +       + L      D R+  + Q    + TGR S      QN+P +         
Sbjct: 669 QLAKLKSTYTDALLRQAGRDDRVHTSFQM-AITSTGRLSSTDPNLQNIPVRT-------- 719

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA +GKKL+ AD + IE R+LA +A      +AF
Sbjct: 720 ----------------EEGTRIRQAFIAPSGKKLISADYSQIELRLLADVANIPALREAF 763

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLD 458
             G+DI+  T ++ FN P++ +    R   K +   + Y   A    K     A      
Sbjct: 764 QLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTY 823

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  +         + +  + E+                          +      A+   
Sbjct: 824 IDAYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAP 883

Query: 498 LIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           L G A +++K+A        +    G  ++   + +       E  + +   +  
Sbjct: 884 LQGGAADIIKRAMVHLPLALQKAGFGATRMLLQVHDELLFETDESDAEAVAEIIK 938



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGKL 597
            AR   +         +  +  +   +R   Y     G   Y+     +    R Y  + 
Sbjct: 819 EARTYIDAYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQ 878

Query: 598 TENI-VQAISRDILCEGM----KNATKNGY---DIVLTVHDEIVSETPDTPYFSVGTL 647
             N  +Q  + DI+   M        K G+    ++L VHDE++ ET ++   +V  +
Sbjct: 879 AINAPLQGGAADIIKRAMVHLPLALQKAGFGATRMLLQVHDELLFETDESDAEAVAEI 936


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +  +     
Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK      +    
Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQD 808

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/578 (15%), Positives = 178/578 (30%), Gaps = 102/578 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57
             L +D ET   +P+           A +   +++  +     V +  DR E   +  + 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +    +    K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAV---VKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVE 168
           +        ++E     GK           D   Y C  A+     +  L  E  + D E
Sbjct: 484 IYLHYQTIHIDELIGPKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAE 543

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                  RL    D E  L  +   I   G  +D + + +       + ++++++I +L 
Sbjct: 544 -------RLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA 594

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 +     +   LF    I        T + + S   +  L     +         
Sbjct: 595 GETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRG 653

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   ++   GR+  +      + TGR S      QN+P +         
Sbjct: 654 LKKLLGTYIDALPLLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR--------- 703

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   I   G     AD + IE R++A ++ +   I AF
Sbjct: 704 ---------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAF 748

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +  DI+  T AK +   +  V  + R   K     + Y     G A+            
Sbjct: 749 LSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKEL 808

Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497
           +  + +       + D                          S +  ++      A+   
Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAP 868

Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
           + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 869 IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/501 (15%), Positives = 151/501 (30%), Gaps = 86/501 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   L D TV+ V  N  ++  +F +  GI +               GL     +    
Sbjct: 421 ELKPLLEDPTVLKVGQNIKYDLSVFARY-GIRVAPYDDTMLISYVLEGGLHGHGMDELSE 479

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L+        ++         K +      D   A          EY   D + T  L+ 
Sbjct: 480 LHLGHTPIPFKQVAGT----GKSAKSFKFVDLKPAT---------EYAAEDADITLRLWH 526

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              ER +  +   +   G RID  ++  L +       +++ +  
Sbjct: 527 VLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQDFGVRMGEIETEAH 586

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD--------- 276
            +      +      L    F    +     +  T +       + ++A+          
Sbjct: 587 TVAGHPF-NLNSPQQLGAIFFDEMALPGGKKT-ATGQWATDVKVLEEIAEKGTHDQGQRL 644

Query: 277 --LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L+L+    +       + L E      +   T     ++ TGR S      QN+P + 
Sbjct: 645 ARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLASTTTGRLSSNEPNLQNIPIRT 704

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+  +A  G KL+ AD + IE R+LA I  
Sbjct: 705 L------------------------EGRKIRTAFVARAGHKLISADYSQIELRLLAHIGD 740

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450
                KAF +G DI+  T ++ F  P++ +  E R   K +   + Y   A         
Sbjct: 741 IGQLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLGNQLGI 800

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                G  ++ + +       + D                          +     +   
Sbjct: 801 DNQEAGRYIKTYFERFPGIKAYMDAAKEQVKATGYVETIFGRRIHIPDIHAKSAGQRAFA 860

Query: 490 PEFAVKDKLIGTACELVKKAW 510
              A+   + GTA +++++A 
Sbjct: 861 ERAAINAPIQGTAADIIRRAM 881


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +         K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 166/498 (33%), Gaps = 83/498 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D   + V  N  ++  +  +  GID+       T +++    L +      +  
Sbjct: 521 LKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAPFD--DTMLISYV--LDAGKGGHGMDE 575

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               HL       A +A   +  +        +A           Y   D + T  L++ 
Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           + P              ER L  +   +   G  ID +++ +L    +Q   +L+E+I +
Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280
                 +       +   LF   G+     +    +     + + +LA+        ILN
Sbjct: 687 DAGEKFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S       ++L E       R+  +     A+ TGR S      QN+P +      
Sbjct: 745 WRQLSKLKSTYTDSLQEHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  GKKL+ AD + IE R+LA IA      
Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G DI+  T +  F  P+D+++ + R   K +   + Y     G A          
Sbjct: 840 EAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++Q+ +       + D                     + Q  S++   +      A+
Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959

Query: 495 KDKLIGTACELVKKAWRA 512
              + GTA +++++A   
Sbjct: 960 NAPIQGTAADIIRRAMTR 977



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 22/116 (18%)

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
             R   Y  ++ +      +     R+           +Q  + DI+   M          
Sbjct: 935  GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALGAE 985

Query: 621  --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGL--PL----KAEG 667
                 ++L VHDE+V E PD     ++  +  +M + P+ A  L  PL    +A G
Sbjct: 986  KLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLVVEARAAG 1041


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%)

Query: 5   FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +D ET    P+    VG+ ++YAE     +        PV   DRTE   + ++     
Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452

Query: 62  RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             E  + V  N  ++ ++             D     ++    L       + +      
Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++  E +    +G+  +      +I     +           L  E    D E       
Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   I   G R+D + + +  E       +++E++ +L       +
Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                +   LF    I        T + + S   +  L     +         + KL   
Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682

Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   G++  +      + TGR S      QN+P +                
Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+
Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T AK +   IDKV++EQR+  K     + Y     G A+            +  + + 
Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                          S +  ++      A+   + G+A +
Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           ++K A    +Q           +LQ+  +L        +E 
Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +  +     
Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 704

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 705 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK      +    
Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQD 805

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 184/555 (33%), Gaps = 99/555 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 265 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKIKVGQHAKFAINLLANCA--- 317

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +       T+ +    +        I+     
Sbjct: 318 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 370

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 371 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 430

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 431 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 489

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 490 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 548

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 549 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 583

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 584 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 643

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + + R   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 644 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 703

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++KKA  A +     
Sbjct: 704 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 763

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 764 SGLDARVILQVHDEL 778



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 630 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 687

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 688 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 747

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 748 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 793


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/578 (15%), Positives = 178/578 (30%), Gaps = 102/578 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57
             L +D ET   +P+           A +   +++  +     V +  DR E   +  + 
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +    +    K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAV---VKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVE 168
           +        ++E     GK           D   Y C  A+     +  L  E  + D E
Sbjct: 484 IYLHYQTIHIDELIGPKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAE 543

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                  RL    D E  L  +   I   G  +D + + +       + ++++++I +L 
Sbjct: 544 -------RLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA 594

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 +     +   LF    I        T + + S   +  L     +         
Sbjct: 595 GETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRG 653

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   ++   GR+  +      + TGR S      QN+P +         
Sbjct: 654 LKKLLGTYIDALPLLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR--------- 703

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   I   G     AD + IE R++A ++ +   I AF
Sbjct: 704 ---------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAF 748

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +  DI+  T AK +   +  V  + R   K     + Y     G A+            
Sbjct: 749 LSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKEL 808

Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497
           +  + +       + D                          S +  ++      A+   
Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAP 868

Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
           + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 869 IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 150/498 (30%), Gaps = 68/498 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D +++ + HN+ F+  + ++    D                G      +   AL+   
Sbjct: 373 LADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDH 432

Query: 121 HLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                +E          F    ID           V          +   EA   L++ +
Sbjct: 433 RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAALALYETM 492

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 ER L  +   +   G  +D   +  +    A+    +  +I KL      +   
Sbjct: 493 ------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLAGRAF-NPGS 545

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILK 291
              L   LF   G+     ++ T       + + +LA         +L            
Sbjct: 546 PKQLGEILFDEMGLPGGKRTK-TGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTY 604

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            + L   +  +D R+  +      + TGR S      QN+P +                 
Sbjct: 605 ADALVGEIDIADQRVHTSFS-QAITTTGRLSSNEPNLQNIPIRT---------------- 647

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   IA+ GK L+ AD + IE R+LA +A      ++FA GEDI+ 
Sbjct: 648 --------SEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHA 699

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
            T A+ F  P++ +    R   K +   + Y     G A+      S     +  +    
Sbjct: 700 RTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARY 759

Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505
                + +     +                      +   +      A+   L G A ++
Sbjct: 760 PEIRRYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADI 819

Query: 506 VKKAWRAKHQGVLQLWKD 523
           +K+A       +     D
Sbjct: 820 IKRAMVRLPAAIRDAGLD 837



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 68/219 (31%), Gaps = 23/219 (10%)

Query: 456 GLDLQQFSQNVKSTSTFE-DWEQAESHHLWMQDQYPEFAVK-----DKLIGTACELVKKA 509
           G  +++        +    D+ Q E   L      P          D    TA E+    
Sbjct: 650 GARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLP 709

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMRRHKRDVHIV 561
                  V +  K +  G    +   G           A+R  +         +R ++  
Sbjct: 710 MEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNET 769

Query: 562 LPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKN--- 616
              +R   Y     G   Y+   T +    R Y  +   N  +Q  + DI+   M     
Sbjct: 770 AEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPA 829

Query: 617 -ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL-CSLM 651
                G D V+   VHDE+V E P     +   L C++M
Sbjct: 830 AIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVM 868


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 188/589 (31%), Gaps = 110/589 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDLLQY 60
            +D ET    P+           A +   ++++ +     V +    E++ A+   L   
Sbjct: 385 SLDTETTGTDPIT----------AELVGMSFSFAENQAFYVPVPANREEALAIVKKLKPI 434

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           + +E  + +  N  ++ ++        +  +  +  +++A       L   +        
Sbjct: 435 IENEKTLKIGQNIKYDMLVL---GNYGVEVRGPMFDTMIAHYVLQPELHHGMDYLAEV-Y 490

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 K+EE   LI    K   +      T            +Y   D + T +L K L
Sbjct: 491 LKYETIKIEE---LIGPKGKNQKNMRDLSPTSV---------YKYACEDADVTLKLKKVL 538

Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                           E  L  +   +   G RID + + +  +      K+L+E++ +L
Sbjct: 539 EKELIENNVNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEVHQL 598

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  +     +   LF    I        T + + S   +  L     +        
Sbjct: 599 AGMEFNIA-SPKQVGEVLFDRLKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 657

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   ++   G +  +      + TGR S      QN+P +        
Sbjct: 658 GLKKLLGTYIDALPLLINPKTGHIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED----- 711

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I   G +   AD + IE R++A ++G+   I+A
Sbjct: 712 -------------------GKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 752

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F  G+DI+  T AK +   ++ V++EQR+  K     + Y     G A+           
Sbjct: 753 FQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLNIERKEAKE 812

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            +  + +N      + D                          S +  ++      A+  
Sbjct: 813 LIDGYFENYPHVKEYMDQSIRLAQEKGYIETIFKRKRYLPDINSRNAVVRGYAERNAINA 872

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
            + G+A +++K A             + + +LQ+  +L        +E 
Sbjct: 873 PIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNFSVVPEEKEK 921


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/595 (16%), Positives = 182/595 (30%), Gaps = 101/595 (16%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S       L  +       +A     A+ +   P +L D     A    L  +
Sbjct: 313 SLDTETTSLDQMEARLVGISFSVTEGEAAYLPLAHHYAGVPEQL-DLAATLA---RLKPW 368

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFS 119
           L +     +  N  ++R +        I        ++LA        +     LA    
Sbjct: 369 LENPARKKLGQNLKYDRHVLANH---GIALAGVADDTLLASYVIESHLTHNMDDLARR-- 423

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177
                + E        C        +            +   Y   D + T  L + L  
Sbjct: 424 ----HLGESTVSYEEICGKGAKQIGFAEVDI------AVASNYAAEDADITLRLNRALAG 473

Query: 178 -------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      D E  +  +   +   G  ID   + +    +  +  +L+++  +    
Sbjct: 474 KLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQEAYQQAGQ 533

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG-TLKSILSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GID   + +  +       S + QLA D  L +L      +
Sbjct: 534 PF-NLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLPKLILQYRGL 592

Query: 290 LKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L   +  D GR+         + TGR S      QN+P +          
Sbjct: 593 AKLKSTYTDKLPSLIRPDTGRVHTNYA-QAVAITGRLSSSDPNLQNIPVRT--------- 642

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR   IA  G ++V AD + IE R++A ++ +   + AFA
Sbjct: 643 ---------------AEGRRVREAFIAPPGHRIVSADYSQIELRIMAHLSDDANMLAAFA 687

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           +GEDI+ TT A+ F    ++V+ EQR   K +   L Y       A       +     +
Sbjct: 688 SGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLIYGMSAFGLAAQLDIERNAAQQYI 747

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498
            ++       + +    +  +      +                          A+   +
Sbjct: 748 DRYFMRFPGVADYMQRTREMAREQGYVETVFGRRLYLPEIRASNPGRRSGAERAAINAPM 807

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            GTA +L+K A  A            + ++Q+  +L                 ++
Sbjct: 808 QGTAADLIKLAMIAVQRWLVAEGLGSKLIMQVHDELVLEVPEAELARVKERLPQI 862


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/520 (15%), Positives = 166/520 (31%), Gaps = 100/520 (19%)

Query: 46  DRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           D  +    P  +            L ++ ++ V  N  ++  +F++  G+ +        
Sbjct: 378 DLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRY-GVRVAPYDDTML 436

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANH 152
               +  GL +   +     +        +E    GK+   RF +  + +          
Sbjct: 437 ISYVQAAGLHNHGMDELAERHLGHTCISFKEVCGTGKSQ-KRFSEIDLKTA--------- 486

Query: 153 VQAWQLFGEYCKRDVEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRID 202
                   EY   D + T  L++ L                ER L  +   +   G ++D
Sbjct: 487 -------TEYAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVD 539

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           +  + +L    AQ+  + +E   KL      +      +   LF   G+     ++    
Sbjct: 540 VAQLSRLSSDFAQKMAEAEETAHKLAGTKF-NLGSPKQIGEILFGEMGLPGGKKTKSG-A 597

Query: 263 SILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGAS 315
                + + +LA     L +   +     KL     + L +A++   GR+  +     A+
Sbjct: 598 WSTDAAVLDELAAQGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSL-AAT 656

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P +                              +R    A  G  
Sbjct: 657 TTGRLSSSEPNLQNIPIRT------------------------EEGRKIREAFTAEPGHV 692

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +V AD + IE R+LA IA  +   +AF  G+DI+  T ++ F  P++ +    R   K +
Sbjct: 693 IVAADYSQIELRLLAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAI 752

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G A             +  + +       + D                 
Sbjct: 753 NFGIIYGISAFGLANNLGIGRDEAKSYIDSYFKKFPGIKDYMDAMKDEAKAKGCVSTIFG 812

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                   +  +  ++      A+   + G A +++++A 
Sbjct: 813 RRIHLPGIKDKNPSVRQFTERQAINAPIQGAAADIIRRAM 852


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 275 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCA--- 327

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +       T+ +    +        I+     
Sbjct: 328 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 380

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 381 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 440

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 441 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 499

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 500 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 558

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 559 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 593

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 594 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 653

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479
           + + R   K +   L Y       AK            + ++         + +  +A+ 
Sbjct: 654 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 713

Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514
                               + +  ++      A+   + GTA +++KKA  A +     
Sbjct: 714 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 773

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 774 SGLDARVILQVHDEL 788



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 13/165 (7%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 640 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 697

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 698 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 757

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGT 646
           DI+ + M        ++G D  ++L VHDE+V E  +     V  
Sbjct: 758 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVSE 802


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +  +     
Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 704

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 705 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 805

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%)

Query: 5   FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +D ET    P+    VG+ ++YAE     +        PV   DRTE   + ++     
Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452

Query: 62  RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             E  + V  N  ++ ++             D     ++    L       + +      
Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++  E +    +G+  +      +I     +           L  E    D E       
Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   I   G R+D + + +  E       +++E++ +L       +
Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                +   LF    I        T + + S   +  L     +         + KL   
Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682

Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   G++  +      + TGR S      QN+P +                
Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+
Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T AK +   IDKV++EQR+  K     + Y     G A+            +  + + 
Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                          S +  ++      A+   + G+A +
Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           ++K A    +Q           +LQ+  +L        +E 
Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%)

Query: 5   FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +D ET    P+    VG+ ++YAE     +        PV   DRTE   + ++     
Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452

Query: 62  RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             E  + V  N  ++ ++             D     ++    L       + +      
Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           ++  E +    +G+  +      +I     +           L  E    D E       
Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADITLKLKNILEQELKTNDAE------- 565

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   I   G R+D + + +  E       +++E++ +L       +
Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                +   LF    I        T + + S   +  L     +         + KL   
Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682

Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   G++  +      + TGR S      QN+P +                
Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++G+   I+AF  G+DI+
Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T AK +   IDKV++EQR+  K     + Y     G A+            +  + + 
Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                          S +  ++      A+   + G+A +
Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           ++K A    +Q           +LQ+  +L        +E 
Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/498 (16%), Positives = 162/498 (32%), Gaps = 83/498 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D +V+ + HN  F+  LF +  GI +               G      +    L
Sbjct: 450 LKDVLEDPSVLKIGHNFKFDHQLFGRN-GITVSPVDDSMLISYVLEGGSHGHGMDELAEL 508

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + +      +E        C    +   +D    +   A+         D + T  L+  
Sbjct: 509 HLAYTPIPFKEV-------CGTGKNQITFDRVPLDKALAY------AAEDADITLRLWTL 555

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              +R L  +   +   G RID   + +L + ++    ++++++  
Sbjct: 556 LKPRLVDSRMVTVYETLDRPLVPVVANMEREGVRIDQQALARLSQDLSVRLAEIEKEVHA 615

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280
           L      +      L   LF    +      + T       S + +LA+        +L+
Sbjct: 616 LAGQSF-NIGSPKQLGEILFDTLKLGTGKKGK-TGAYSTDSSVLEELAEQGHTIAQRVLD 673

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +       + L E +S   GR+        A+ TGR S      QN+P +      
Sbjct: 674 WRQLAKLKSTYTDALQEKISPVTGRVHTAFAL-AATNTGRLSSTDPNLQNIPVRT----- 727

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +AS G KL+  D + IE R++A +A      
Sbjct: 728 -------------------EEGRKIRRAFVASPGHKLLSVDYSQIELRLVAEMADIQALK 768

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +G DI+  T A+ F  P+ +++ + R   K +   + Y     G  +         
Sbjct: 769 DAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISGFGLGRQLGIAPGEA 828

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              ++ + +       + +  +A +                      +   +      A+
Sbjct: 829 NAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRCYMPGIQDKNAARRAFAERQAI 888

Query: 495 KDKLIGTACELVKKAWRA 512
              + GTA +++K+A   
Sbjct: 889 NAPIQGTAADIMKRAMNR 906


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSID-SPPYDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D +  Y C  A+   + +  F ++  
Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDVASHYACEDADITFRLFNRFNQHIN 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +  +     
Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 171/493 (34%), Gaps = 73/493 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-----TNGLPSSL 109
             L   L    +  +  N  F  +L  +  GI + +   +     A      ++GL  +L
Sbjct: 505 DALKPLLESAGLAKIGFNIKFTAVLLAQH-GITLRNIDDLQLMSYALDAGRGSHGLD-AL 562

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVE 168
             + L             GKA I         +  Y   RA+  ++ W++         E
Sbjct: 563 SESNLGHTLHALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLV--AE 620

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +++ +I +L 
Sbjct: 621 RMMAVYETL------ERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELA 674

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGS 287
              I +      L   LF   G+     ++ T     S   + +LA+      R      
Sbjct: 675 GEDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHEFPRKILDWR 732

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            + KL     + L   V    +   T     A+ TGR S      QN+P +         
Sbjct: 733 QVSKLRSTYTDALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------ 786

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IAS G KLV AD + IE R+L+ +A      KAF
Sbjct: 787 ------------------GRKIRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAF 828

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +G DI+  T ++ F  P++ +  E R   K +   + Y     G A          G  
Sbjct: 829 QDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAY 888

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++++ +       + D                     +   ++ +  ++      A+  +
Sbjct: 889 IKRYFERFPGIRAYMDETRDFCRAHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINAR 948

Query: 498 LIGTACELVKKAW 510
           L G+A +++++A 
Sbjct: 949 LQGSAADIIRRAM 961


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/581 (14%), Positives = 172/581 (29%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +         K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK + T +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/554 (15%), Positives = 172/554 (31%), Gaps = 97/554 (17%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D   +    + L   L D +V+ + HN  ++  +  +     +    +  T +L+     
Sbjct: 392 DILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTMLLSYVLDG 448

Query: 106 --PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
                  +    L+      K  +        C    +   +D    +   A+       
Sbjct: 449 ASHGHGMDELAKLHLDHDTIKFADV-------CGTGKNQITFDRVPLDKALAY------A 495

Query: 164 KRDVEATRELF---------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             D + T  L          +R++ + +  ER L  +   +   G ++D   ++ L    
Sbjct: 496 AEDADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALMALSAEF 555

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
                +L+  I  L      +      L   LF    +     ++ T +       + +L
Sbjct: 556 GGRMAELEVQIQNLAGREF-NVGSPQQLGKVLFENMSLPGGKKTK-TGQWGTGADALEEL 613

Query: 274 AKD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
           A         +L+    S       + L   ++   GR+  +      + TGR S     
Sbjct: 614 AAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFAL-ALTTTGRLSSSDPN 672

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                              +R   IA  G  L+ AD + IE 
Sbjct: 673 LQNIPIRS------------------------EEGRKIRHAFIAEPGHVLLSADYSQIEL 708

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R++A +A     I+AF +G DI+  T A+ F  P++ +    R   K +   + Y     
Sbjct: 709 RLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGISAF 768

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------- 481
           G A+            +  +         F +  + E+                      
Sbjct: 769 GLAQQLGISNGEAKSYIDAYFGRYPEIRDFMERTKEEARANGFVLTPFGRKVFTPGIKDK 828

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531
           +  M+      A+   + G A +++K+A             K + +LQ+  +L       
Sbjct: 829 NGAMRAFAERAAINGPIQGGAADIIKRAMIRLPAALAAEGLKARLLLQVHDELVLEVPVA 888

Query: 532 VQEGGSISARRVAN 545
            Q+       RV  
Sbjct: 889 EQDATRAVVCRVME 902


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +        
Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 705

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 706 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +        
Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 702

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 703 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 805

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/563 (15%), Positives = 176/563 (31%), Gaps = 105/563 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
                 L++   + +  N  F+ ++ +K    ++     +  +++A     P      + 
Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +EE      +  + S+ + P            +   EY   D + T +
Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADITLK 499

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L     P           +  E  L  +   +   G  +D   + +    +     KL++
Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           ++ +L      +   T  +   LF    +D       T     S   + +L     +   
Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGK 618

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL     + L E ++   G++  +      + TGR S      QN+P     
Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395
                                      +R   I  N       AD + IE R++A ++G+
Sbjct: 673 -------------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGD 713

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +G DI+  T AK +  P++KV+ + R   K     + Y     G A+     
Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S     +  +         + +                          SH+  ++    
Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLSDINSHNAVVRGYAE 833

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + G+A +++K A             K + +LQ+  +L         E      
Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE------ 887

Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563
                V ++V+   +  + + +P
Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 183/562 (32%), Gaps = 94/562 (16%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
            +D ET S   L    VG+    +         AW        +      M +++L+   
Sbjct: 335 ALDTETNSLDQLKTRLVGISLSTD------IGKAWYIPVAHQVELGCNQLMKAEVLEAMR 388

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L  E    +  N+ ++  +F    GI +   +   T VLA        +    L+L +
Sbjct: 389 SWLESEQKTKILQNAKYDMHVFANE-GIVLKGIK-HDTMVLAYVIDTNQRVGLEALSLKY 446

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                                I          ++V       +Y   D + T  L   L+
Sbjct: 447 LNRKG-----------LSYEEICGKGAKAITFDYVPL-DQATQYACEDADFTFHLLTELL 494

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P          + D E  +  +   +   G  ID   +L   E+I+    KL+ +I  L 
Sbjct: 495 PKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKLESEIFNLA 554

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L   LF    ++    +   + S  +   + +LA D  +        +
Sbjct: 555 GEEF-NINSPKQLSEILFTKLKLETQGKTRTGVIST-NEDALEKLALDHPIAVHLLEYRS 612

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   ++   GR+           +GR S      QN+P +         
Sbjct: 613 LSKLKSTYTDKLPTMINKVTGRVHTVFSQTTV-LSGRLSSFDPNLQNIPIRNED------ 665

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR   +A +G KL+ AD + +E R++A I+ ++  +KAF
Sbjct: 666 ------------------GRQVRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAF 707

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLD 458
             G DI+ +T ++ F  P+ +V   QR   K +   L Y  GA                 
Sbjct: 708 KEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGAFALANNLGISRETAQNY 767

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDK 497
           + ++         F D  + ++      +                          A+   
Sbjct: 768 IYKYFDRFPKVRKFMDDIKIQASQDGYVETIYGRRIYIPGIQDSKGARKAALERVAINAP 827

Query: 498 LIGTACELVKKAWRAKHQGVLQ 519
           + G+A +++K A  + H+ + Q
Sbjct: 828 VQGSAADIIKMAMISVHKWISQ 849



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%)

Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           VQ  + DI+   M +  K          I+L VHDE+V E  ++    +   L  LM   
Sbjct: 828 VQGSAADIIKMAMISVHKWISQNKLNSRIILQVHDELVLEVHESEIEILKLKLPKLMEDV 887

Query: 655 PSWAK-GLPLKA 665
              AK  +PL+A
Sbjct: 888 ---AKLDVPLEA 896


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/581 (14%), Positives = 173/581 (29%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 358 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E+ + V  N  ++ I+ +      +  K  +  +++A     P      +    
Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQNY---GVEVKGPLFDTMIAHYVLQPELRHGMDYLAE 464

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +                    Y   D + T +L  
Sbjct: 465 IYLHYQTIHIDE---LIGPKGKNQKNMRDLAPKDV---------YRYACEDADVTLKLKN 512

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +      ++ ++++++I 
Sbjct: 513 VLEKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKEIY 572

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 573 DLAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 631

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 632 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 684

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 685 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 726

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   + +V  + R   K     + Y     G A+         
Sbjct: 727 DAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISVFGLAERMNVERKEA 786

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 787 KELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 846

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 847 NAPIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDELN 887


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +        
Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 702

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 703 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 805

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +        
Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 705

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 706 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/555 (17%), Positives = 183/555 (32%), Gaps = 106/555 (19%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            A      + +   PV+L DR +  A  + LL+   D     V  +  ++  + ++    
Sbjct: 373 HADYLPLGHDYPGAPVQL-DRVQALAALAPLLE---DPAKRKVGQHGKYDLHVLRRHGVQ 428

Query: 87  DIPSKRWICTSVLARTNGLPSS-LKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSID 141
                    T + +      +S      LA   L +     +   GK      F + +ID
Sbjct: 429 VHGYAD--DTMLESFVLNSTASRHDMDSLAKRYLGYDTVKYEDVAGKGAKQIAFSQVAID 486

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190
               D T             Y   D + T  L + L    D            E  L  +
Sbjct: 487 ----DAT------------GYAAEDADITLRLHRALSAQLDAEPALARVYREIEMPLVPV 530

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I   G  +D+  + K  ++++Q      +  V L      +      L+  LF    
Sbjct: 531 LTRIEANGVCVDIAELRKQSQVLSQRMLAAQQKAVALAGRSF-NLDSPKQLQAVLFDELK 589

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           +  +  +     S    + +  +A    L R+      + KL     + L E V+   GR
Sbjct: 590 LPALLKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGR 648

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +    GA+ TGR S      QN+P +                              +
Sbjct: 649 VHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 683

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G+KL+  D + IE R++A ++ +   ++AF+ G D++  T A+ F   +++V
Sbjct: 684 RRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGVDVHRATAAEVFGRTLEQV 743

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475
           S  +R   K +   L Y       A+            +  +     +   F +      
Sbjct: 744 SANERRAAKAINFGLMYGMSAFGLARNLGIGRGEAQDYVALYFSRYPAVRDFMERMREQA 803

Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW--------- 510
                               +    ++      A+   + GTA +++K+A          
Sbjct: 804 RTQGYVETLFGRRLYLNDINAKQQGLRAGAERAAINAPMQGTAADIIKRAMVSVDTWLQD 863

Query: 511 -RAKHQGVLQLWKDL 524
            RA+   +LQ+  +L
Sbjct: 864 HRARALMILQVHDEL 878


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/530 (16%), Positives = 184/530 (34%), Gaps = 85/530 (16%)

Query: 31  TLCAYAWDDE---PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
              AY   +    PV   DR E  A+         + T+  V  N  ++ ++ KK  G++
Sbjct: 472 LSFAYRAGEAFYVPVP-ADRAEAQAIVDQFKPVFENPTIEKVGQNLKYDLLMLKKY-GVE 529

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +  K +  T +               +A+ +  +     E +ALI +  KG +     D 
Sbjct: 530 VQGKLF-DTMIAHYLIEPEMRHNMDMMAMTYLNYSP--VEIEALIGKKGKGQLTMRDVDI 586

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDR 197
            +           +Y   D + T +L     P  +           E  L  +   +   
Sbjct: 587 QKV---------VDYAGEDADITLQLKHAFAPRLEKDNLHKLFDQVEMPLVQVLTDLELE 637

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G +ID + + +L   +  + +++ ++I ++      +      L   LF    +D     
Sbjct: 638 GIKIDTNALSELSATLEVDMRQVQQEIFEIAGESF-NIGSPKQLGEVLFDKLKLDKNAKK 696

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQF 311
             T +       +++L  +  + R       ++KL     + L   +S   GR+  +   
Sbjct: 697 TKTGQYATGEEILSKLEAEHEIARKILDYRELIKLKNTYVDALPLLISKRTGRIHTSFN- 755

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370
              + TGR S      QN+P +                              +R   +  
Sbjct: 756 QAVAATGRLSSTNPNLQNIPIRT------------------------PRGQEIRKAFVPR 791

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                ++ AD + IE R++A  +G+   ++AF NG DI+  T +K F+  +D+V+ + R 
Sbjct: 792 GPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHVGLDEVTSDMRR 851

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------ 480
             K +   + Y     G A+  K      G  ++++     +   + D    ++      
Sbjct: 852 KAKTINFGIIYGISSFGLAQRLKIPRKEAGQIIEEYFAGFPAVKDYIDQCIEKARGFGYA 911

Query: 481 ---------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                           +   +      AV   + G+A +++K A    H+
Sbjct: 912 ETILGRRRYLRDINSRNQTDRMFAERNAVNAPIQGSAADMLKIAMIQIHE 961


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +        
Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 705

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 706 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            + R   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 98/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%)

Query: 49  EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               +P D     L  +L D     + H++ ++  +F    G+ +       T + A   
Sbjct: 371 AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANE-GVSLAGVA-EDTMLQAYVL 428

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGE 161
                +    LA  F         G++ +     C        +D           L G 
Sbjct: 429 ESHRGVGLNDLAQRFL--------GRSGVNYEDLCGKGAKQIGFDEVAV------ALAGH 474

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T +L + L P    +  L            +   +   G ++D   + +   
Sbjct: 475 YSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSH 534

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + QE   L++   +L      +      L   LF   G+ +V  + G   S      ++
Sbjct: 535 KLGQEMLALEQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLS 592

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
           +LA+D  L ++      + KL     + L   ++   GR+        A  TGR +    
Sbjct: 593 KLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYS-QAAVITGRLASSDP 651

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +  +                           VR   IA  G KL+ AD + IE
Sbjct: 652 NLQNIPVRTEA------------------------GRRVREAFIAEQG-KLLSADYSQIE 686

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
            R++A ++ +    +AFA GEDI+  T ++ F  P+ +V  EQR   K +   L Y  G 
Sbjct: 687 LRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV 746

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------- 488
              A             + ++       + + D  +  +      +              
Sbjct: 747 FGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRA 806

Query: 489 --------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                       A+   + GTA +L+K A  A     +Q W D   
Sbjct: 807 ASGPRRQGAERAAINAPMQGTAADLIKMAMVA-----VQDWLDAER 847


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/576 (16%), Positives = 188/576 (32%), Gaps = 114/576 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQSAMPSD 56
           D+ET S           Y + A I   ++A +                    E+  +   
Sbjct: 325 DLETTSLN---------YMD-AEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVLEQ 374

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
           L   L D     +  N  ++  +       DI  +     ++L         +      L
Sbjct: 375 LRPLLEDPRRAKLGQNLKYDMSVLAHY---DIALRGVRFDTMLESYILDSTATRHDMDSL 431

Query: 115 ALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           AL +  H T   +   GK      F + +I                +   EY   D +  
Sbjct: 432 ALKYLGHRTIKFEDVAGKGAKQLTFDQVAI----------------ERATEYAAEDADIA 475

Query: 171 RELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P               E  L  +   +   G  +  +L+      +AQ   +
Sbjct: 476 LRLHRVLYPKLRQLPGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLAE 535

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           ++  + +       +      ++  L+   G+ ++  +     S  + S + +LA    L
Sbjct: 536 IEASVYRAAGCEF-NLGSPKQIQAVLYDRQGLPVLAKTPKGAPST-AESVLQELAATYPL 593

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            R+     A+ KL     + L   +    GR+  + +    + TGR S      QN+P +
Sbjct: 594 PRMILEHRALAKLKSTYTDKLPLLIHPRTGRVHTSYR-QAVAATGRLSSSDPNLQNIPVR 652

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +L+  D + +E R++A  +
Sbjct: 653 S------------------------PEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFS 688

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
           G++   +AFA GEDI+  T A+ F T +++V+ EQR   K +   L Y       A+   
Sbjct: 689 GDERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAINFGLIYGMSAYGLARQLG 748

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    ++++ +       F +                       +  + +   +  
Sbjct: 749 IERDAAQHYVERYFERYPGVKAFMERIRREARERQYVETVFGRRLYLPEINASNAQRRQA 808

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
               A+   + G+A +++K+A     Q +    +D+
Sbjct: 809 AERTAINAPMQGSAADIIKRAMVRVDQWLQSEREDV 844



 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           Q  + DI+   M          +    +VL VHDE+V E P     +V  
Sbjct: 819 QGSAADIIKRAMVRVDQWLQSEREDVFMVLQVHDELVFEVPTPDVQAVAE 868


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 98/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%)

Query: 49  EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               +P D     L  +L D     + H++ ++  +F    G+ +       T + A   
Sbjct: 371 AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANE-GVSLAGVA-EDTMLQAYVL 428

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGE 161
                +    LA  F         G++ +     C        +D           L G 
Sbjct: 429 ESHRGVGLNDLAQRFL--------GRSGVNYEDLCGKGAKQIGFDEVAV------PLAGH 474

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T +L + L P    +  L            +   +   G ++D   + +   
Sbjct: 475 YSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSH 534

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + QE   L++   +L      +      L   LF   G+ +V  + G   S      ++
Sbjct: 535 KLGQEMLALEQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLS 592

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
           +LA+D  L ++      + KL     + L   ++   GR+        A  TGR +    
Sbjct: 593 KLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYS-QAAVITGRLASSDP 651

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +  +                           VR   IA  G KL+ AD + IE
Sbjct: 652 NLQNIPVRTEA------------------------GRRVREAFIAEQG-KLLSADYSQIE 686

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
            R++A ++ +    +AFA GEDI+  T ++ F  P+ +V  EQR   K +   L Y  G 
Sbjct: 687 LRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV 746

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------- 488
              A             + ++       + + D  +  +      +              
Sbjct: 747 FGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRA 806

Query: 489 --------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                       A+   + GTA +L+K A  A     +Q W D   
Sbjct: 807 ASGPRRQGAERAAINAPMQGTAADLIKMAMVA-----VQDWLDAER 847


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
          Length = 904

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 99/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%)

Query: 49  EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               +P D     L  +L D     + H++ ++  +F    G+ +       T + A   
Sbjct: 371 AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANE-GVSLAGVA-EDTMLQAYVL 428

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGE 161
                +    LA  F         G++ +     C        +D           L G 
Sbjct: 429 ESHRGVGLNDLAQRFL--------GRSGVNYEDLCGKGAKQIGFDEVAV------PLAGH 474

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T +L + L P    +  L            +   +   G ++D   + +   
Sbjct: 475 YSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSH 534

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + QE   L++   +L      +      L   LF   G+ +V  + G   S      ++
Sbjct: 535 KLGQEMLALEQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLS 592

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
           +LA+D  L ++      + KL     + L   +S   GR+        A  TGR +    
Sbjct: 593 KLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMISPATGRVHTHYS-QAAVITGRLASSDP 651

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +  +                           VR   IA  G KL+ AD + IE
Sbjct: 652 NLQNIPVRTEA------------------------GRRVREAFIAEQG-KLLSADYSQIE 686

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
            R++A ++ +    +AFA GEDI+  T ++ F  P+ +V  EQR   K +   L Y  G 
Sbjct: 687 LRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV 746

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------- 488
              A             + ++       + + D  +  +      +              
Sbjct: 747 FGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRA 806

Query: 489 --------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                       A+   + GTA +L+K A  A     +Q W D   
Sbjct: 807 ASGPRRQGAERAAINAPMQGTAADLIKMAMVA-----VQDWLDAER 847


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 100/536 (18%), Positives = 175/536 (32%), Gaps = 99/536 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR----DETVMCVAHNSLFERILFKK 82
           A      +A D  P        +  +P  D+L  L+       +     N  ++  +FK+
Sbjct: 362 AYYIPVGHALDAAP--------EGQLPRADVLAALKPLLESPEIGKTGQNIKYDYQIFKR 413

Query: 83  TLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
                I  +     + + +        L  A  A N    +   E G+  I       + 
Sbjct: 414 Y---HITMQGIERDSMLYSYL------LYGANRAHNLDA-IATEELGRTTIKF---EDVA 460

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190
                  R + V    L   Y   D E T +    + P  D            ER L  +
Sbjct: 461 GKGRKRIRFDQVPL-HLAAPYACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPV 519

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  +D D++  +    ++ R +L E+I +L   +  +   T  L   LF   G
Sbjct: 520 LAEMEYAGVLVDRDVLSTMSADFSKRRARLVEEIHELAGEVF-NVNSTQQLGHILFEKMG 578

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLI-LNRLASSGSAILKL-----NTLSEAVSS-DG 303
           I     ++         S +++LA D   + +   +  ++ KL     + L   +    G
Sbjct: 579 IKGGKRTKSGF--STDVSVLSKLADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTG 636

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +      + TGR S      QN+P +                              
Sbjct: 637 RVHTSYN-QAVTLTGRLSSSDPNLQNIPIRT------------------------EEGRA 671

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+  IA  G  L+ AD + IE RVLA +       +AF  G DI+  T A+ F  P+ +
Sbjct: 672 IRTAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQ 731

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           V+ E R + K +   L Y       AK      +     +  +           D    +
Sbjct: 732 VTGEHRRMAKTINFGLVYGMSPFGLAKRLGIQNNEARAYMDLYFARYDGVRQHMDATIRD 791

Query: 480 SH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
           +                         +++     A+   L G+A +L+K A    H
Sbjct: 792 ARAHGFVETLGGRRCPIRDINATQRSLREFAERTAINAPLQGSASDLIKLAMIRLH 847



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 603 QAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS-----LM 651
           Q  + D++   M          G+   +VL VHDE+V E PD    +V  +       +M
Sbjct: 832 QGSASDLIKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKELAAVKEVVRSCMEGVM 891

Query: 652 TKNPS 656
           T +  
Sbjct: 892 TLSIP 896


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   +D V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELDNVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            + R   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   + V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELDNVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 184/554 (33%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G+Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            + R   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 102/588 (17%), Positives = 187/588 (31%), Gaps = 107/588 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSDLL 58
           L ID ET   +P+    V      A     AY     A  DE +K+          ++  
Sbjct: 381 LSIDTETTGTEPMEAELVGMSFSNAENR--AYYVPVPANRDEALKIV---------NEFR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
               +E  M V  N  ++ I+ +   G+ +  K +  T +               LA  +
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGKLF-DTMLAHYVLQPELRHNMDYLAEIY 487

Query: 119 SEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             + T  ++E      +  K   D PP D               Y   D + T +L   L
Sbjct: 488 LRYRTIHIDELIGSRGKNQKSMRDLPPEDV------------YRYACEDADVTLKLKNVL 535

Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L  +   I   G RID + + +  E      ++++++I  L
Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +G   +      +   LF    I        T + + S   +  L     +        
Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR 655

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + ++   GR+  +      + TGR S      QN+P +        
Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR-------- 706

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I  +G +   AD + IE R++A ++ +   I A
Sbjct: 707 ----------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDA 750

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +G DI+  T AK +   I +V+ + R   K     + Y     G A+           
Sbjct: 751 FLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVFGLAERMNVSRQEAKE 810

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            +  + +       + D                          S +  ++      A+  
Sbjct: 811 LIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 870

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
            + G+A +++K A    +Q           +LQ+  +L        +E
Sbjct: 871 PIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKE 918


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 107/575 (18%), Positives = 194/575 (33%), Gaps = 99/575 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E  +A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDSETTSLDPMVAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLAKLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +       +     LAL    
Sbjct: 395 LESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSLALRHLG 452

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDC------TRANHVQAWQLFGEYCKRDVEAT 170
               K E+  GK      F + ++D            T   H   +         D    
Sbjct: 453 VKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQALYPQIAVENSLD-HVY 511

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           RE+          E     + + +   G  ID + + +    IA    +L+    +L  G
Sbjct: 512 REI----------EVPTSRVLRKMERTGVLIDAEKLRQQSGEIATRLIELEGSAYELAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +    F    + ++  +     S      + +LA+D  L ++      + 
Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVIKKTPSGAPST-DEEVLQKLAEDYPLPKILLEHRGLS 619

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   V+   GR+         + TGR +      QN+P +           
Sbjct: 620 KLKSTYTDKLPRMVNPRTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G KLV AD + IE R++A I+G++  ++AF+ 
Sbjct: 669 --------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQ 714

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GEDI+  T ++ FN    +VS +QR + KV+   L Y       A           + + 
Sbjct: 715 GEDIHRATASEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYID 774

Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDKLI 499
           ++       + + D            E      LW+          +      A+   + 
Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524
           GTA +L+K +  A            + ++Q+  +L
Sbjct: 835 GTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDEL 869


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++ ++   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDSVLKTLKPLLEDPGKIKVGQHAKFAINLLANCA--- 416

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +       T+ +    +        I+     
Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIA 469

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 470 GKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVL 529

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T +   + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 589 PILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVELEGV 742

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +++ R   K +   L Y       AK            + ++         + +  +A++
Sbjct: 743 TQDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQA 802

Query: 481 HHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWRAKH----- 514
                 +                          A+   + GTA +++KKA  A +     
Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDA 862

Query: 515 -----QGVLQLWKDL 524
                + +LQ+  +L
Sbjct: 863 SGLDARVILQVHDEL 877



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V +  R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELEGVTQDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M         +G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 184/554 (33%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G+Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            + R   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/499 (18%), Positives = 163/499 (32%), Gaps = 85/499 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L D   + V  N  ++  +  +  GID+       T +++              LA
Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRPFD--DTMLISYVLDAGKGGHGMDELA 577

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                H        A   R  K + D    D   A           Y   D + T  L++
Sbjct: 578 RRHLGHQPITFADVAGTGR-NKVTFDHVAIDKATA-----------YAAEDADVTLRLWR 625

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            + P              ER L  +   +   G  ID +++ +L    +Q   +L+E+I 
Sbjct: 626 MMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQ 685

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLIL 279
           +      +       +   LF   G+     +    +     + + +LA+        IL
Sbjct: 686 EDAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKIL 743

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N    S       ++L +       R+  +     A+ TGR S      QN+P +     
Sbjct: 744 NYRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT---- 798

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  GKKL+ AD + IE R+LA IA     
Sbjct: 799 --------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQL 838

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            +AF  G DI+  T +  F   +D+++ + R   K +   + Y     G A         
Sbjct: 839 REAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREE 898

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               ++Q+ +       + D                     + Q  S++   +      A
Sbjct: 899 ASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQA 958

Query: 494 VKDKLIGTACELVKKAWRA 512
           +   + GTA +++++A   
Sbjct: 959 INAPIQGTAADIIRRAMTR 977



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
             R   Y  ++ +      +     R+           +Q  + DI+   M          
Sbjct: 935  GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985

Query: 621  --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664
                 ++L VHDE+V E PD     ++  +  +M + P  A  L L+
Sbjct: 986  KLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 184/554 (33%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G+Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            + R   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/574 (15%), Positives = 187/574 (32%), Gaps = 103/574 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLAN----- 414

Query: 88  IPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                  C     + +G+            +       T+ +    +        ++   
Sbjct: 415 -------CAIGGDQAHGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPVNFQD 467

Query: 145 YDCTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189
                A  +     A +  G Y   + + T  L +               LSD E  L  
Sbjct: 468 IAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQPVLSDIEMPLVP 527

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   I  +G  +D +L+      +  +   L+ +   +      +      L + L+   
Sbjct: 528 VLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIAGEEF-NLGSPKQLGVILYEKL 586

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-D 302
           G+ ++  +  T +   + + +++LA+ D  L ++     ++ KL +     L E ++   
Sbjct: 587 GMPILSKT-ATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRT 645

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +      + TGR S      QN+P +                             
Sbjct: 646 GRVHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGR 680

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++
Sbjct: 681 RIRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRATAAEVFGVELE 740

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V+ + R   K +   L Y       AK            + ++         + +  +A
Sbjct: 741 GVTNDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 479 ESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWRAKH--- 514
           ++      +                          A+   + GTA +++KKA  A +   
Sbjct: 801 QAAEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWL 860

Query: 515 -------QGVLQLWKDLTEGFACVVQEGGSISAR 541
                  + +LQ+  +L       + E  S   R
Sbjct: 861 EESGLDARVILQVHDELVLEVREDLVEQISEQIR 894



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELEGVTNDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VEQISEQ 892


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 96/584 (16%), Positives = 185/584 (31%), Gaps = 114/584 (19%)

Query: 5   FIDIETRSPQPL----------PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            +D ET S  P+           +VG  AY          + +   PV+L    ++    
Sbjct: 346 ALDTETDSLDPMQAVLIGLSFASEVGCAAY------LPFGHDYPGAPVQL----DRGQAL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L   L D  V  V  +  ++  + ++   +               T+G      +   
Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLA 455

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +      K       +    KG+   P             Q   +Y   D + T  L 
Sbjct: 456 RRHLGYETMKY------VDLVGKGAKQIPFSHVGV-------QEATQYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L P             + E  L  + + I   G +ID + + K    +++      + 
Sbjct: 503 CVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            + L      +      L++ LF    + +V  +     S    + +  +     L R+ 
Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL       L E +    GR+       GA+ TGR S      QN+P +    
Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A +G+KL+  D + IE R++A ++G+  
Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF +G D++    A+ F   ID+V+  +R   K +   L Y       A+       
Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492
                +  +         F +  + ++      +                          
Sbjct: 776 EAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835

Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524
           A+   + GTA +++K+A             R +   +LQ+  +L
Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879



 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551
           A+  ++ G   + V    R   + +          F    Q G S   A+    +     
Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YLN+  S    +R    +   N  +Q  + DI
Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M          G+     ++L VHDE+V E  +    + V  + + M   
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 96/584 (16%), Positives = 185/584 (31%), Gaps = 114/584 (19%)

Query: 5   FIDIETRSPQPL----------PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
            +D ET S  P+           +VG  AY          + +   PV+L    ++    
Sbjct: 346 ALDTETDSLDPMQAVLIGLSFASEVGCAAY------LPFGHDYPGAPVQL----DRGQAL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L   L D  V  V  +  ++  + ++   +               T+G      +   
Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLA 455

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +      K       +    KG+   P             Q   +Y   D + T  L 
Sbjct: 456 RRHLGYETMKY------VDLVGKGAKQIPFSHVGV-------QEATQYAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L P             + E  L  + + I   G +ID + + K    +++      + 
Sbjct: 503 CVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            + L      +      L++ LF    + +V  +     S    + +  +     L R+ 
Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL       L E +    GR+       GA+ TGR S      QN+P +    
Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A +G+KL+  D + IE R++A ++G+  
Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF +G D++    A+ F   ID+V+  +R   K +   L Y       A+       
Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492
                +  +         F +  + ++      +                          
Sbjct: 776 EAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835

Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524
           A+   + GTA +++K+A             R +   +LQ+  +L
Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551
           A+  ++ G   + V    R   + +          F    Q G S   A+    +     
Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YLN+  S    +R    +   N  +Q  + DI
Sbjct: 789 SGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M          G+     ++L VHDE+V E  +    + V  + + M   
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 96/531 (18%), Positives = 178/531 (33%), Gaps = 91/531 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +     ++ +  +  N  F+ ++  + LG++I  +++  T +L       S      LA 
Sbjct: 434 VRPLFENDRIAKIGQNIKFDLMVL-RQLGLEIRGRKY-DTMILHYLLDPESRHNMNALAE 491

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  +  K  E + LI +  K               +   +   EY   D + T  L   
Sbjct: 492 KYLNY--KPIEIETLIGKGSKQ----------LTMDLVNVERVKEYAAEDADVTLRLKHA 539

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P            + E  +  +   I   G RID + +      +++   +L+  I +
Sbjct: 540 LYPQIEELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICE 599

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF    I        T +       +   A    +  L    
Sbjct: 600 EAGESQLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILEY 659

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL       L + V+   GR+  +      + TGR S      QN+P +E      
Sbjct: 660 RGVKKLLSTYVEALPQLVNRRTGRIHTSFN-QAVTATGRLSSTNPNLQNIPVRE------ 712

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   I S     L+ AD + +E R++A ++G++  I
Sbjct: 713 ------------------EMGRRIRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLI 754

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AFA+GEDI+  T AK FN  +D+V+ E+R   K     + Y     G ++  +      
Sbjct: 755 AAFAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIPRKEA 814

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAV 494
              +  +  +      + D   A++                     H+   +      AV
Sbjct: 815 KEIIDGYFASYPKVQEYMDNVVAKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAERNAV 874

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
              + G+A +++K A    H+           +LQ+  +L        QE 
Sbjct: 875 NAPIQGSAADIMKIAMINVHRRFAAEGIRSKVILQVHDELVVDMLRSEQER 925


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 102/588 (17%), Positives = 187/588 (31%), Gaps = 107/588 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSDLL 58
           L ID ET   +P+    V      A     AY     A  DE +K+          ++  
Sbjct: 381 LSIDTETTGTEPMEAELVGMSFSNAENR--AYYVPVPANRDEALKIV---------NEFR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
               +E  M V  N  ++ I+ +   G+ +  K +  T +               LA  +
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGKLF-DTMLAHYVLQPELRHNMDYLAEIY 487

Query: 119 SEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             + T  ++E      +  K   D PP D               Y   D + T +L   L
Sbjct: 488 LRYRTIHIDELIGSRGKNQKSMRDLPPEDV------------YRYACEDADVTLKLKNVL 535

Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L  +   I   G RID + + +  E      ++++++I  L
Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +G   +      +   LF    I        T + + S   +  L     +        
Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR 655

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + ++   GR+  +      + TGR S      QN+P +        
Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR-------- 706

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I  +G +   AD + IE R++A ++ +   I A
Sbjct: 707 ----------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDA 750

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +G DI+  T AK +   I +V+ + R   K     + Y     G A+           
Sbjct: 751 FLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVFGLAERMNVSRQEAKE 810

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            +  + +       + D                          S +  ++      A+  
Sbjct: 811 LIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 870

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
            + G+A +++K A    +Q           +LQ+  +L        +E
Sbjct: 871 PIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKE 918


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/589 (16%), Positives = 189/589 (32%), Gaps = 103/589 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQ--- 59
           +D ET S +P+           A +   + A+               +    +D+     
Sbjct: 413 LDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKSSLQ 462

Query: 60  -YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            +L +  +  +  N  +++ +F    GI +         + +             L+  +
Sbjct: 463 PFLENPQLGKIGQNMKYDQHVFANH-GIALQGIS-GDAMLASYIVESHLGHGLDELSERW 520

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            +  T   E        C       P+     +         EY  +D +    + + L 
Sbjct: 521 LQLPTITYES------LCGKGAKQIPFADVPLD------KAAEYACQDADFALRIEQHLR 568

Query: 179 ---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  +  +   +   G  ID + + +    + +E  +L+ +   L  
Sbjct: 569 TQMDDKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFALAG 628

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSA 288
               +      L+  LF   G+    + +    S     S + +LA D  L +L     +
Sbjct: 629 KPF-NLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQHRS 687

Query: 289 ILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L E +  + GR+         + TGR +      QN+P +         
Sbjct: 688 LAKLKSTYTDKLPEMILPATGRVHTNYA-QAVAITGRLASNNPNLQNIPIRT-------- 738

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G+ +V AD + IE R++A ++G+     AF
Sbjct: 739 ----------------EQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAF 782

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
            N ED++  T A+ F  P + ++ EQR   K +   L Y       AK          + 
Sbjct: 783 QNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTINFGLIYGMSSFGLAKALGIDNMSAEMF 842

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQY--PEFAVKD------------------KL 498
           ++++       + + +  + ++  L   +        + D                   +
Sbjct: 843 IKRYFARYTGVAEYMERTKEQARSLGYVETLFGRRLYLPDIHGSAIRRAAAERAAINAPM 902

Query: 499 IGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            GTA +L+K+A        A  Q   QL   + +     V E      +
Sbjct: 903 QGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPEDELAHIK 951



 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 19/77 (24%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656
           Q  + D++   M          ++   +V+ VHDE+V + P+        L  +  + P 
Sbjct: 903 QGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPE------DELAHIKAQLPQ 956

Query: 657 WAKG-------LPLKAE 666
           W          +PL AE
Sbjct: 957 WMSDVGEGVLAVPLLAE 973


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/589 (14%), Positives = 176/589 (29%), Gaps = 108/589 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57
             L +D ET   +P+           A +   +++  +     V +  D+ E   + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +      +  K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GVQVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +                    Y   D + T +L  
Sbjct: 484 IYLRYQTIHIDE---LIGPKGKNQKNMRDLAPKDV---------YRYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + + ++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISVFGLAERMNVERKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQ 533
              + G+A +++K A    +Q           +LQ+  +L        +
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVEEK 914


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPGKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            + R   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G+Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +        TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVGVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
            + R   K +   L Y       AK            + ++         + +  +A+  
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514
                              + +  ++      A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/591 (15%), Positives = 185/591 (31%), Gaps = 110/591 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQS--AMPSDL 57
             L +D ET S   +          +A +   ++A ++      +     +    + +  
Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114
                D  ++ V  N  ++  + +      +     +  +++A     P    ++     
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                     +EE   LI    +   +      T            EY   D + T  L 
Sbjct: 455 V-YLGYRTVHIEE---LIGPRGRNQKNMRDLSPTDI---------YEYACEDADITLRLK 501

Query: 175 KRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P  D           E  L  +   +   G  +D + + +  E+  +    +++ I
Sbjct: 502 NVLEPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQHI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      +   LF    I        T + + S   + QL     +     
Sbjct: 562 YELAGEQF-NISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +   + KL     + L + ++   GR+  +      + TGR S      QN+P       
Sbjct: 621 NYRGLKKLLSTYVDALPKLINPRTGRIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I   G     AD + IE R++A ++ ++  
Sbjct: 673 -----------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF  G DI+  T A+ ++  I +V+  +R   K     + Y     G A+        
Sbjct: 716 IEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMDISNGE 775

Query: 455 CGLDL----------QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA 493
               +          + + +  K T+  + +               SH+  ++      A
Sbjct: 776 ARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGFAERNA 835

Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           +   + G+  +++K A    H+           +LQ+  +L        +E
Sbjct: 836 INAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKE 886


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D   + V  N  ++  +  +  GID+       T +++    L +      +  
Sbjct: 526 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVTPFD--DTMLISYV--LDAGKGGHGMDE 580

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               HL       A +A   +  +        +A           Y   D + T  L++ 
Sbjct: 581 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 631

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           + P              ER L  +   +   G  ID +++ +L    +Q   +L+E+I +
Sbjct: 632 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 691

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280
                 +       +   LF   G+     +    +     + + +LA+        ILN
Sbjct: 692 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 749

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S       ++L +       R+  +     A+ TGR S      QN+P +      
Sbjct: 750 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 803

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  GKKL+ AD + IE R+LA IA      
Sbjct: 804 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 844

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G DI+  T +  F   +D+++ + R   K +   + Y     G A          
Sbjct: 845 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 904

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++Q+ +       + D                     + Q  S++   +      A+
Sbjct: 905 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 964

Query: 495 KDKLIGTACELVKKAWRA 512
              + GTA +++++A   
Sbjct: 965 NAPIQGTAADIIRRAMTR 982



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
             R   Y  ++ +      +     R+           +Q  + DI+   M          
Sbjct: 940  GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 990

Query: 621  --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664
                 ++L VHDE+V E PD     ++  +  +M + P  A  L L+
Sbjct: 991  RLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1035


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D   + V  N  ++  +  +  GID+       T +++    L +      +  
Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVTPFD--DTMLISYV--LDAGKGGHGMDE 575

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               HL       A +A   +  +        +A           Y   D + T  L++ 
Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           + P              ER L  +   +   G  ID +++ +L    +Q   +L+E+I +
Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280
                 +       +   LF   G+     +    +     + + +LA+        ILN
Sbjct: 687 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S       ++L +       R+  +     A+ TGR S      QN+P +      
Sbjct: 745 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  GKKL+ AD + IE R+LA IA      
Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G DI+  T +  F   +D+++ + R   K +   + Y     G A          
Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++Q+ +       + D                     + Q  S++   +      A+
Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959

Query: 495 KDKLIGTACELVKKAWRA 512
              + GTA +++++A   
Sbjct: 960 NAPIQGTAADIIRRAMTR 977



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
             R   Y  ++ +      +     R+           +Q  + DI+   M          
Sbjct: 935  GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985

Query: 621  --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664
                 ++L VHDE+V E PD     ++  +  +M + P  A  L L+
Sbjct: 986  RLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 92/500 (18%), Positives = 160/500 (32%), Gaps = 87/500 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L    V+ +  N  F  +L  +  GI + +   +     A   G  +   +A  
Sbjct: 493 EALRPILESPGVLKIGFNIKFTAVLLAQH-GITLQNADDVQLMSYALDAGRHAHGLDALA 551

Query: 115 ALNFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       E          F + +ID                    Y   D +   
Sbjct: 552 ETWLGHKTLSYGEVIGSGKAKLSFDQVAIDRATC----------------YAAEDADVAL 595

Query: 172 ELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L++ L P              ER L  +   +  RG  ID  ++ +L    AQ   +++
Sbjct: 596 RLWRVLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIE 655

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILN 280
            +I ++    I +      L   LF    +     ++ T     S   + +LA+      
Sbjct: 656 AEIREIAGEEI-NIGSPKQLGDILFGKMQLPGGSKTK-TGAWSTSAQVLEELAEQGHEFP 713

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           R       + KL     + L   V        T     A+ TGR S      QN+P +  
Sbjct: 714 RKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTE 773

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G KLV AD + IE R+LA IA  
Sbjct: 774 D------------------------GRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADI 809

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
               +AF +G DI+  T ++ F  PI  +  E R   K +   + Y     G A      
Sbjct: 810 PVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIP 869

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
               G  ++++ +       + D                     +   ++ +  ++    
Sbjct: 870 REEAGAYIKKYFERFPGIRAYMDATRDFCRAHGFVETLFGRKCHYPDIKASNASVRAFNE 929

Query: 491 EFAVKDKLIGTACELVKKAW 510
             A+  +L GTA +++++A 
Sbjct: 930 RAAINARLQGTAADIIRRAM 949



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     R+  Y D+K      N +            +L     Q  + DI+   M    
Sbjct: 903 FVETLFGRKCHYPDIKAS----NASVRAFNERAAINARL-----QGTAADIIRRAMVRME 953

Query: 619 KN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655
                      ++L VHDE++ E  D     ++  +  +M   P
Sbjct: 954 DALAEKKLSAQMLLQVHDELIFEVADDEVAATLPVVQQVMQDAP 997


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 94/540 (17%), Positives = 180/540 (33%), Gaps = 97/540 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  +L D T   + H++ ++  +F    GI +       T + A        +    LA 
Sbjct: 385 LKPWLEDATRAKLLHHAKYDAHVFANE-GIKLAGI-TEDTMLQAYVLESHRGVGLNDLAQ 442

Query: 117 NFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            +         G++ ++    C        +D    +        G Y   D + T +L 
Sbjct: 443 RYL--------GRSGVSYEDLCGKGAKQIGFDEVAVD------KAGHYAAEDSDFTLQLH 488

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + L P+             E  +  +  T+   G ++D   + +    + QE  +L++  
Sbjct: 489 QVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQLEQKA 548

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      L   LF    + +V  +     S      +++LA+D  L ++  
Sbjct: 549 YELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTASGAPST-DEEVLSKLAQDYPLPQVLL 606

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   ++   GR+        A  TGR +      QN+P +  +  
Sbjct: 607 EYRGLSKLKSTYTDKLPRMINPNTGRVHTHYS-QAAVITGRLASSDPNLQNIPVRTEA-- 663

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    VR   IA  G  L+ AD + IE R++A ++ +   
Sbjct: 664 ----------------------GRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANL 700

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
            +AF  GEDI+  T ++ F   ++ VS EQR   K +   L Y  G    A         
Sbjct: 701 QRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINFGLIYGMGVFGLASNLGITRDA 760

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               + ++       + + D  +  +      +                          A
Sbjct: 761 AQAYIDRYFARYPGVAMYMDDTRRRAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAA 820

Query: 494 VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + GTA +L+K A  A          + + ++Q+  +L         E    +  R+
Sbjct: 821 INAPMQGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVHDELVLEAPDAELELVKEALPRL 880


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D   + V  N  ++  +  +  GID+       T +++    L +      +  
Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRPFD--DTMLISYV--LDAGKGGHGMDE 575

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               HL       A +A   +  +        +A           Y   D + T  L++ 
Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           + P              ER L  +   +   G  ID +++ +L    +Q   +L+E+I +
Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280
                 +       +   LF   G+     +    +     + + +LA+        ILN
Sbjct: 687 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S       ++L +       R+  +     A+ TGR S      QN+P +      
Sbjct: 745 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  GKKL+ AD + IE R+LA IA      
Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G DI+  T +  F   +D+++ + R   K +   + Y     G A          
Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++Q+ +       + D                     + Q  S++   +      A+
Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959

Query: 495 KDKLIGTACELVKKAWRA 512
              + GTA +++++A   
Sbjct: 960 NAPIQGTAADIIRRAMTR 977



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
             R   Y  ++ +      +     R+           +Q  + DI+   M          
Sbjct: 935  GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985

Query: 621  --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664
                 ++L VHDE+V E PD     ++  +  +M + P  A  L L+
Sbjct: 986  KLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 110/615 (17%), Positives = 197/615 (32%), Gaps = 105/615 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQSAMP-SDL 57
           + +D ET S  PL               L   +   EP     + +   T +  +P   +
Sbjct: 358 IALDTETTSTDPLNGA------------LVGISLAVEPGTGYYLPVGHLTGEPQLPLESI 405

Query: 58  LQYLR----DETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPS 107
              L     D     V  N  ++ +  +      + L  D     W+     +R  GL  
Sbjct: 406 RDALAPFLGDPRKPKVGQNLKYDLLALRLAGMEAQGLAFDTLLAEWLVDPA-SRALGLK- 463

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            +    L +  +     +  GK              PY    A      +   E      
Sbjct: 464 EMAERYLGVQMTRIEELIGTGKNQRTMAQVSVAQVAPYAAADAEITLRLKPILEERMLKA 523

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             TR LF+      D E  L  +   +   G  +D+  + ++   ++Q   +++++I  L
Sbjct: 524 GVTR-LFQ------DVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIEKEIYAL 576

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH--SNITQLAKDLILNRLASS 285
                 +   T  L   LF    ++  D  + T   + S     + +L     +  L   
Sbjct: 577 VGHPF-NINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPVLDLILE 635

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V+   GR+       G S TGR +      QN+P +      
Sbjct: 636 NRELSKLKSTYVDALPQQVNPRTGRVHTRFNQTG-SVTGRLASSDPNLQNIPTRT----- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR+  IA  G  L+  D + IE R++A +A ++  +
Sbjct: 690 -------------------DLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAML 730

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHC 455
            AF  G+DI+  T A  +  P++ V++E R   K +   L Y   A      A    +  
Sbjct: 731 AAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSAFGLSRSADLTLAEA 790

Query: 456 GLDLQQFSQNVKSTSTFED-------WEQAESHHLWMQDQYP---------------EFA 493
              ++ + +       F D        E      L  +  +P                 A
Sbjct: 791 ENFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGRRRYFPNLKNPANPALKAREEREA 850

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + GTA +++K A             +         +    +    V  VPR  M  
Sbjct: 851 INAPIQGTAADIIKLAMIR--------LPEALRAAGSRARLLLQVHDELVLEVPREEMPG 902

Query: 554 HKRDVHIVLPSSRRL 568
             + V  V+ ++  L
Sbjct: 903 TAKLVQHVMETAYPL 917


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 92/591 (15%), Positives = 189/591 (31%), Gaps = 110/591 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLL 58
             L +D ET S   +          +A +   ++A ++     V +    E++     + 
Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397

Query: 59  QYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114
           + L  D  ++ V  N  ++  + +      +     +  +++A     P    ++     
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                     +EE   LI    +   +      T            EY   D + T  L 
Sbjct: 455 V-YLGYRTVHIEE---LIGPRGRNQKNMRDLSPTDI---------YEYACEDADITLRLK 501

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P            D E  L  +   +   G  +D + + +  E+  +    +++ I
Sbjct: 502 NVLEPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQHI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      +   LF    I        T + + S   + QL     +     
Sbjct: 562 YELAGEQF-NISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +   + KL     + L + ++   GR+  +      + TGR S      QN+P       
Sbjct: 621 NYRGLKKLLSTYVDALPKLINPRTGRIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I   G     AD + IE R++A ++ ++  
Sbjct: 673 -----------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF  G DI+  T A+ ++  I +V+  +R   K     + Y     G A+        
Sbjct: 716 IEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMDISNGE 775

Query: 455 CGLDL----------QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA 493
               +          + + +  K T+  + +               SH+  ++      A
Sbjct: 776 ARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGFAERNA 835

Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           +   + G+  +++K A    H+           +LQ+  +L        +E
Sbjct: 836 INAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKE 886


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D   + V  N  ++  +  +  GID+       T +++    L +      +  
Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRPFD--DTMLISYV--LDAGKGGHGMDE 575

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               HL       A +A   +  +        +A           Y   D + T  L++ 
Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           + P              ER L  +   +   G  ID +++ +L    +Q   +L+E+I +
Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280
                 +       +   LF   G+     +    +     + + +LA+        ILN
Sbjct: 687 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S       ++L +       R+  +     A+ TGR S      QN+P +      
Sbjct: 745 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  GKKL+ AD + IE R+LA IA      
Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G DI+  T +  F   +D+++ + R   K +   + Y     G A          
Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++Q+ +       + D                     + Q  S++   +      A+
Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959

Query: 495 KDKLIGTACELVKKAWRA 512
              + GTA +++++A   
Sbjct: 960 NAPIQGTAADIIRRAMTR 977



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
             R   Y  ++ +      +     R+           +Q  + DI+   M          
Sbjct: 935  GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985

Query: 621  --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664
                 ++L VHDE+V E PD     ++  +  +M + P  A  L L+
Sbjct: 986  KLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 86/554 (15%), Positives = 182/554 (32%), Gaps = 97/554 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFK----------RLIPLS-DGERDLWLLDQ 192
             A  +     A +  G Y   + + T  L +           L P+  D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLHDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305
           ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR+
Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+
Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            + R   K +   L Y       AK            + ++         + +  +A++ 
Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 482 HLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWRAKH------ 514
                +                          A+   + GTA +++KKA  A +      
Sbjct: 804 EQGFVETIFGRRLYLPDINAKTQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863

Query: 515 ----QGVLQLWKDL 524
               + +LQ+  +L
Sbjct: 864 GLDARVILQVHDEL 877



 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKTQSLRKGAERMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/512 (15%), Positives = 172/512 (33%), Gaps = 75/512 (14%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  +  V+  DRTE       L   L+D +V+ V  N+ ++  +F+     +I       
Sbjct: 403 STGEAFVRQLDRTE---ALERLKPLLQDASVLKVFQNAKYDLTVFRGAGIPEITPIDDTM 459

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR---FCKGSIDSPPYDCTRAN- 151
               A++ G      +    L+        +       +   F + +I++          
Sbjct: 460 LISYAQSAGEHGQGMDELSELHLGHTPVTYDSVTGTGRKRIPFAQVAIEAATAYAAEDAD 519

Query: 152 -HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
             ++ WQ+                + L    + ER L  +   + D G ++D   + ++ 
Sbjct: 520 VTLRLWQVLRPQ--------LRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRMS 571

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
              A+    ++++I +       +      L   LF   G+     ++           +
Sbjct: 572 ADFAERMGTIEQEIHEQVGRSF-NVGSPKQLGEILFDEMGLPGGKRTKSG-SWGTDSGVL 629

Query: 271 TQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGC 323
             LA+    L +   +   + KL     + L + +  D  R+  + Q    + TGR S  
Sbjct: 630 ESLAEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQM-AITTTGRLSSN 688

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +                              +R   +A+ G  L+ AD + 
Sbjct: 689 EPNLQNIPIRT------------------------EEGARIRKAFVATPGCVLLSADYSQ 724

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R+LA +A  +  ++AF  G+DI+  T ++ F  P++ +    R   K +   + Y  
Sbjct: 725 IELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGI 784

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------- 480
              G A+  +         +  +         + +  + E+                   
Sbjct: 785 SAFGLAQQLQISPGEARSYIDAYFARYPGIRAYMERTKEEAKKHGYVTTPFGRRCYVPGI 844

Query: 481 --HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
              +   +      A+   L G A +++K+A 
Sbjct: 845 TEKNGARRAYAERQAINAPLQGGAADIIKRAM 876



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 22/125 (17%)

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM- 614
                  + +    +   G   Y+   T +    R Y  +   N  +Q  + DI+   M 
Sbjct: 818 MERTKEEAKKHGYVTTPFGRRCYVPGITEKNGARRAYAERQAINAPLQGGAADIIKRAMV 877

Query: 615 ---KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL-M--------------TKN 654
              +     G    +VL VHDE++ E  +    ++       M                 
Sbjct: 878 HLARRLPATGLKAKMVLQVHDELLFEVEEQDAKALADFVRTEMEGAAKLDVALEVETGIG 937

Query: 655 PSWAK 659
           PSWA 
Sbjct: 938 PSWAD 942


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 89/561 (15%), Positives = 187/561 (33%), Gaps = 111/561 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419

Query: 85  --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136
                I  +     ++L         +      L   +  H     +   GK      F 
Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK----------RLIP-LSDGER 185
           + +I                +  G Y   + + T  L +           L P L+D E 
Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEM 523

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I  +G  +D +L+      +  +   L+ +   +      +      L + L
Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299
           +   G+ ++  +  T +   + + + +LA+ D  L ++     ++ KL +     L E +
Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F 
Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             ++ V+ + R   K +   L Y       AK            + ++         + +
Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796

Query: 475 WEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             + ++                         +++     A+   + GTA +++KKA  A 
Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856

Query: 514 H----------QGVLQLWKDL 524
           +          + +LQ+  +L
Sbjct: 857 NGWLDESGLDARVILQVHDEL 877



 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 89/561 (15%), Positives = 187/561 (33%), Gaps = 111/561 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419

Query: 85  --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136
                I  +     ++L         +      L   +  H     +   GK      F 
Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK----------RLIP-LSDGER 185
           + +I                +  G Y   + + T  L +           L P L+D E 
Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEM 523

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I  +G  +D +L+      +  +   L+ +   +      +      L + L
Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299
           +   G+ ++  +  T +   + + + +LA+ D  L ++     ++ KL +     L E +
Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F 
Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             ++ V+ + R   K +   L Y       AK            + ++         + +
Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796

Query: 475 WEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             + ++                         +++     A+   + GTA +++KKA  A 
Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856

Query: 514 H----------QGVLQLWKDL 524
           +          + +LQ+  +L
Sbjct: 857 NGWLDESGLDARVILQVHDEL 877



 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 543 QDKTAAQLLYH-------LEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +  +     
Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%)

Query: 5   FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56
            ID ET     +       VG+               +  D       D    + +P D 
Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110
                   L +  +  +  +  ++  +FKK  GI+I    W   ++LA    N   +   
Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482

Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
              LA   L       +   GK      F K ++D+   Y C  A+   + +  F ++  
Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D  A + L+         E     +   +   G  ID D + +L +   ++   L  + 
Sbjct: 543 QDKTAAQLLYH-------LEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281
            ++ D     +     L   LF   GI     ++ T +   S + ++++     D++L  
Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + S       +TL+ A    GR+  +      + TGR S      QN+P +  +     
Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G+ ++ AD + IE R++A  +G++  I+A
Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F +  DI+  T A+     I +V+  +R   K +   L Y       AK  +   +    
Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++     +   + +                         +S +  ++D     A+  
Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            L G+A E++K A  A  + + +
Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/592 (15%), Positives = 185/592 (31%), Gaps = 112/592 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPS 55
             L ID ET S            AE     L   ++ D   + +      +R E   + +
Sbjct: 369 KILSIDTETTS------------AEPMEAELVGMSFSDTENQAYYVPVPPEREEALKIVN 416

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113
           +      +E  M V  N  ++ ++ +   G+++  +  +  ++LA     P      +  
Sbjct: 417 EFRPLYENENSMKVGQNIKYDILVLQNY-GVEVKGE--LFDTMLAHYVLQPELRHNMDYL 473

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             +        ++E      +  K   D PP            +   +Y   D + T +L
Sbjct: 474 AEIYLHYQTIHIDELIGPKGKNQKNMRDLPP------------EEVYKYACEDADITLKL 521

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L              + E  L  +   +   G RID + + +  E      ++++++
Sbjct: 522 KNVLEEELKKQGVEHLFYEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKE 581

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I +L       +     +   LF    I        T + + S   +  L     +    
Sbjct: 582 IYELAGETFNIA-SPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVIGKI 640

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   ++   GR+  +      + TGR S      QN+P +    
Sbjct: 641 LEYRGLKKLLGTYVDALPLLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR---- 695

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I  +  +   AD + IE R++A ++ +  
Sbjct: 696 --------------------DEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKN 735

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I AF +G DI+  T AK +   I  V+ + R   K     + Y     G A+       
Sbjct: 736 MIDAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISIFGLAERMNVDRK 795

Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492
                +  + +       + D                          S +  ++      
Sbjct: 796 EAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFHRKRFLPDINSRNATVRGYAERN 855

Query: 493 AVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           A+   + G+A +++K A    ++           +LQ+  +L        +E
Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFQSYKLKAKMILQVHDELNFSVPEAEKE 907


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 188/568 (33%), Gaps = 102/568 (17%)

Query: 3   KLFIDIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
              ID ET         L    V   A  A     A+ ++  P +L     +  +   + 
Sbjct: 348 HFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQL----NREHVLEQIK 403

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116
             L +E V  + H+  ++  +F       I  + W   ++LA    N   +      +A 
Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH---GITIQGWYFDTMLASYVLNAAATRHGMDDVAR 460

Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  HLT   E   GK    + F +  ++   +                Y   D   T  
Sbjct: 461 VYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAH----------------YAAEDAHVTYR 504

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L++ L             L + E  +  +   + + G ++D   + +L    ++  + L+
Sbjct: 505 LYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLE 564

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L       +     +   LF   G+     +  T +   S S + ++   L    
Sbjct: 565 NQATELAGEAFNIA-SPKQVGEVLFDRLGLKGGKKT-ATGQYSTSESILEKIEHPLAEVI 622

Query: 282 LASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           L   G A LK NT ++ +      S  R+  +      + TGR S      QN+P +   
Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDSTHRVHTSY-HQALTATGRLSSTDPNLQNIPIRT-- 678

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G+ L+ AD + IE R++A  + +D
Sbjct: 679 ----------------------PIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDD 716

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AF  G+D++  T A+     I+ V+ +QR   K +   L Y        +      
Sbjct: 717 ALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTR 776

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPE 491
                 + ++ Q       + +  +  +                         ++     
Sbjct: 777 EESRSYIARYFQRYPGVLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAER 836

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            A+   L G+A +++K A  A  + + +
Sbjct: 837 AAINAPLQGSAADIIKLAMIAVDKILPK 864


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/561 (15%), Positives = 184/561 (32%), Gaps = 111/561 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419

Query: 85  --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136
                I  +     ++L         +      L   +  H     +   GK      F 
Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGER 185
           + +I                +  G Y   + + T  L +               L++ E 
Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEM 523

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I  +G  +D +L+      +  +   L+ +   +      +      L + L
Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299
           +   G+ ++  +  T +   + + + +LA+ D  L ++     ++ KL +     L E +
Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F 
Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             ++ V+ + R   K +   L Y       AK            + ++         + +
Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796

Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                     + +  +++     A+   + GTA +++KKA  A 
Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856

Query: 514 H----------QGVLQLWKDL 524
           +          + +LQ+  +L
Sbjct: 857 NGWLDESGLDARVILQVHDEL 877



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDT 639
           DI+ + M        ++G D  ++L VHDE+V E  + 
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVRED 884


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/571 (16%), Positives = 192/571 (33%), Gaps = 97/571 (16%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKR--- 92
           +  E  K+ D   ++ + + L+    D  ++   ++   +          ++I   R   
Sbjct: 381 FQSEESKVLD---EAEVFNKLIPLFEDHAIVKTGYDIKADY----HWFNALNISPSRLLN 433

Query: 93  ------WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                 ++  S L R   L +   +  +     ++L K    K +     K         
Sbjct: 434 DVQVMAFVYDSTLKRDKSLSAHFSHLSIDNLVIQYLQKSP--KTVEDYLGKAGKRQLSPS 491

Query: 147 CTRANHVQAWQL----FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             +A+ +  W      F     + +E      +      + ER L      I + G ++D
Sbjct: 492 AVKADDIGQWWAERADFVLRLGQWLEQGLASRQLSRVYQEIERPLSKTLAAIEENGVKLD 551

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           ++ V +L     ++ + ++     L      +      L   LF   G+ +   +     
Sbjct: 552 VEFVHELSTRFKRDLEDIERQAHDLAGVEF-NLDSPKQLADVLFERMGLPVKSKTASGAP 610

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA-VSSDG--RLRGTLQFYGA 314
           S  +   +T+LA +  L RL      + KL     + L    +  DG  RL  T    GA
Sbjct: 611 ST-NEEVLTELAAEHELPRLILQSRRLRKLVGTYTDPLPTMTIDHDGDQRLHTTYNQTGA 669

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
            +TGR +      QN+P +                              +R   +A  G 
Sbjct: 670 -QTGRLNSNDPNLQNIPVRS------------------------EEGRSIRKAFVAPQGY 704

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           ++V AD + IE R++  ++ +   I+AF  G+DI+  T A+      ++VS EQR   K 
Sbjct: 705 RIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEEEQVSAEQRRSAKA 764

Query: 435 MELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------- 481
           +   L Y       A+      +     +  + +       + D  +AE+          
Sbjct: 765 INFGLIYGMSAFGLARQLGISRTEAKTYVDAYFERYPGVRRYMDETRAEAAESGYVETVF 824

Query: 482 ------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQ 519
                       +   +      A+   + GTA +++K A               + ++Q
Sbjct: 825 GRRLYLPGIQSSNQIARKAAERTAINAPMQGTAADIIKMAMVDVDNWLSNSSLRARMIMQ 884

Query: 520 LWK----DLTEGFACVVQEGGSISARRVANV 546
           +      ++ E     + EG     +  AN+
Sbjct: 885 VHDELVFEVHEDDVAALTEGVRFRMQHCANL 915


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 186/564 (32%), Gaps = 94/564 (16%)

Query: 3   KLFIDIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
              ID ET         L    V   A  A     A+ ++  P +L     +  +   + 
Sbjct: 348 HFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQL----NREHVLEQIK 403

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116
             L +E V  + H+  ++  +F       I  + W   ++LA    N   +      +A 
Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH---GITIQGWYFDTMLASYVLNAAATRHGMDDVAR 460

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  HLT   E            I          N ++  ++   Y   D   T  L++ 
Sbjct: 461 VYLSHLTTTFEQ-----------IAGKGAKQKSFNQIEL-EVAAHYAAEDAHVTYRLYEV 508

Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L             L + E  +  +   + + G ++D   + +L    ++  + L+    
Sbjct: 509 LSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLENQAT 568

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF   G+     +  T +   S S + ++   L    L   
Sbjct: 569 ELAGEAFNIA-SPKQVGEVLFDRLGLKGGKKT-ATGQYSTSESILEKIEHPLAEVILEHR 626

Query: 286 GSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           G A LK NT ++ +      S  R+  +      + TGR S      QN+P +       
Sbjct: 627 GLAKLK-NTYTDRLVEQSHDSTHRVHTSY-HQALTATGRLSSTDPNLQNIPIRT------ 678

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  G+ L+ AD + IE R++A  + +D  + 
Sbjct: 679 ------------------PIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVH 720

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF  G+D++  T A+     I+ V+ +QR   K +   L Y        +          
Sbjct: 721 AFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESR 780

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVK 495
             + ++ Q       + +  +  +                         ++      A+ 
Sbjct: 781 SYIARYFQRYPGVLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAIN 840

Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519
             L G+A +++K A  A  + + +
Sbjct: 841 APLQGSAADIIKLAMIAVDKILPK 864


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/592 (15%), Positives = 186/592 (31%), Gaps = 112/592 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPS 55
             L ID ET S            AE     L   ++ D   + +      +R E   + +
Sbjct: 369 KILSIDTETTS------------AEPMEAELVGMSFSDTENQAYYVPVPAEREEALKIVN 416

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113
           +      +ET M V  N  ++ ++ +      +  K  +  +++A     P      +  
Sbjct: 417 EFRPLYENETSMKVGQNIKYDILVLQNY---GMEVKGELFDTMIAHYVLQPELRHNMDYL 473

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             +        ++E   LI    K   +           +   +++  Y   D + T +L
Sbjct: 474 AEIYLHYQTIHIDE---LIGPRGKNQKNM--------RDLPPEEVYK-YACEDADVTLKL 521

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L              + E  L  +   +   G RID + + +  E      ++++++
Sbjct: 522 KNVLEEELKKQGVEHLFYEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKE 581

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I +L +     +     +   LF    I        T + + S   +  L     +    
Sbjct: 582 IYELAEETFNIA-SPKQVGEILFDKLKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKI 640

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   ++   GR+  +      + TGR S      QN+P +    
Sbjct: 641 LEYRGLKKLLGTYIDALPLLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR---- 695

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I  +G +   AD + IE R++A ++ +  
Sbjct: 696 --------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKN 735

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I AF +G DI+  T AK +   I  V+ + R   K     + Y     G A+       
Sbjct: 736 MIDAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISIFGLAERMNVDRK 795

Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492
                +  + +       + D                          S +  ++      
Sbjct: 796 EAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFHRKRFLPDINSRNATVRGYAERN 855

Query: 493 AVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           A+   + G+A +++K A    ++           +LQ+  +L        +E
Sbjct: 856 AINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQVHDELNFSVPEAEKE 907


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/555 (16%), Positives = 177/555 (31%), Gaps = 108/555 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      + +   P +L        +   L   L+D     +  +  ++  + ++     
Sbjct: 376 AAYIPVGHDYPGAPPQLP----MQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRH---G 428

Query: 88  IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSID 141
           +  + +   ++L     N   +      LAL +  + T   +   GK      F +  ID
Sbjct: 429 VEVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYNTIKFEDVAGKGAKQIPFSQVGID 488

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLL 190
                               Y   D + T  L + L P             D E  L  +
Sbjct: 489 EASR----------------YAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPV 532

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
             +I   G RID   + +  + ++       +   +L      +      L+  LF    
Sbjct: 533 LTSIEANGVRIDTVELRRQSQDLSSRMLAAQQKATELAGRSF-NLDSPKQLQAVLFDELK 591

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GR 304
           +  V  +     S    + +  +A    L R+      + KL     + L E V+ D GR
Sbjct: 592 LPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGR 650

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +    GA+ TGR S      QN+P +                              +
Sbjct: 651 VHTSYHQSGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 685

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IA  G +L+ AD + IE R++A ++ +   + AF  G D++  T A+ F   +++V
Sbjct: 686 RRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLVGAFEQGADVHRATAAEVFGRTLEEV 745

Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475
           +  +R   K +   L Y       A+            +  +         F +      
Sbjct: 746 TPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRYPGVRDFMERMRQQA 805

Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515
                               + +  ++      A+   + GTA +++K+A     Q    
Sbjct: 806 RDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRD 865

Query: 516 ------GVLQLWKDL 524
                  +LQ+  +L
Sbjct: 866 SGAPARMILQVHDEL 880



 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F      G  I   +  +   L   
Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQAQDYVALYFS 789

Query: 553 RHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+         +   +  +     + G   YLN   ++    R    +   N  +Q  + 
Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849

Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           DI+   M +  +          ++L VHDE+V ET  +    +   +   M++ 
Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEELRLQVVERMSQA 903


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/561 (15%), Positives = 184/561 (32%), Gaps = 111/561 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419

Query: 85  --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136
                I  +     ++L         +      L   +  H     +   GK      F 
Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGER 185
           + +I                +  G Y   + + T  L +               L++ E 
Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEM 523

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I  +G  +D +L+      +  +   L+ +   +      +      L + L
Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299
           +   G+ ++  +  T +   + + + +LA+ D  L ++     ++ KL +     L E +
Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F 
Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             ++ V+ + R   K +   L Y       AK            + ++         + +
Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796

Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                     + +  +++     A+   + GTA +++KKA  A 
Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856

Query: 514 H----------QGVLQLWKDL 524
           +          + +LQ+  +L
Sbjct: 857 NGWLDESGLDARVILQVHDEL 877



 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/561 (15%), Positives = 184/561 (32%), Gaps = 111/561 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A      +++   P +L    ++  +   L   L D   + V  ++ F   L        
Sbjct: 368 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 423

Query: 85  --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136
                I  +     ++L         +      L   +  H     +   GK      F 
Sbjct: 424 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 483

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGER 185
           + +I                +  G Y   + + T  L +               L++ E 
Sbjct: 484 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEM 527

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I  +G  +D +L+      +  +   L+ +   +      +      L + L
Sbjct: 528 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 586

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299
           +   G+ ++  +  T +   + + + +LA+ D  L ++     ++ KL +     L E +
Sbjct: 587 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 645

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +      + TGR S      QN+P +                         
Sbjct: 646 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 680

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T ++ F 
Sbjct: 681 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 740

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             ++ V+ + R   K +   L Y       AK            + ++         + +
Sbjct: 741 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 800

Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                     + +  +++     A+   + GTA +++KKA  A 
Sbjct: 801 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 860

Query: 514 H----------QGVLQLWKDL 524
           +          + +LQ+  +L
Sbjct: 861 NGWLDESGLDARVILQVHDEL 881



 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 733 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 790

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 791 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 850

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 851 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 896


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/547 (16%), Positives = 172/547 (31%), Gaps = 100/547 (18%)

Query: 48  TEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                +P D     L   L D  V+ +  N  ++  +  +  GID+              
Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY-GIDVAPYDDTMLISYVME 446

Query: 103 NGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
            GL     +A   L+        +E    GK  I  F K  +D                 
Sbjct: 447 AGLHGHGMDALAELHLGHTCIPFKEICGTGKNQIT-FDKVPLDKA--------------- 490

Query: 159 FGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L++ L P              ER +  +   +   G ++D D + +
Sbjct: 491 -TLYAAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDPDQLNR 549

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L     Q+    + +  +       +      +   LF   G+     ++ T       +
Sbjct: 550 LSSDFGQKMMAAEAEAHEAAGRDF-NVASPKQIGEILFGEMGLPGGKKTK-TGAWSTDAA 607

Query: 269 NITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            + QLA +   L           KL     ++L   ++ D +   T     A+ TGR S 
Sbjct: 608 VLDQLAAEGHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGRLSS 667

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +  +                           +R   IA  G  LV AD +
Sbjct: 668 TEPNLQNIPIRTEA------------------------GRQIREVFIAEPGHVLVAADYS 703

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            +E R+LA IA  +   +AF +G DI+  T ++ F  PI+ +    R   K +   + Y 
Sbjct: 704 QVELRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYG 763

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------ 480
               G A             +  + +       + D  +A++                  
Sbjct: 764 ISAFGLANQIGVKRDEAKAFIDAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHFPG 823

Query: 481 ---HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACV 531
               +  M+      A+   + G+A +++++A       +       ++   + +     
Sbjct: 824 IRDKNPNMRMFAERQAINAPIQGSAADVIRRAMIRMDDALNAANLDAKMLLQVHDELVFE 883

Query: 532 VQEGGSI 538
           V E  + 
Sbjct: 884 VPENQAA 890


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/498 (16%), Positives = 167/498 (33%), Gaps = 83/498 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L ++ ++ +  N  ++ ++ K+   I + S         A   G+ +   +     
Sbjct: 442 LKPILENQAILKIGQNIKYDWLVMKQY-DIVMRSFDDTMLLSYALEAGISTHGIDVLSER 500

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                    ++    +    K  +     D  +A           Y   D + T  L++ 
Sbjct: 501 WLGHKPITYKD----LTYNGKKIVSFAQIDLKQAT---------LYAAEDADITLRLWQV 547

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              +R L  +   + +RG  +D  ++ +L   +AQ    L+E+I +
Sbjct: 548 LKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQ 607

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285
           L       +     L   LF   G+     ++   +   S   + +LA +  IL R    
Sbjct: 608 LVGERFNIA-SPKQLGDILFGKMGLPGGAKTKNG-QWSTSAQTLEELATEGHILPRKIVD 665

Query: 286 GSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   + +  GR+         + TGR S      QN+P +      
Sbjct: 666 WRQLAKLKSTYTDALPSYILTKTGRVHTNYSLAT-TSTGRLSSSEPNLQNIPART----- 719

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R+  IAS G  L+ AD + IE R+LA  A      
Sbjct: 720 -------------------AEGRKIRAAFIASEGHILLSADYSQIELRILAHFADIGALK 760

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G+DI+  T ++ F   ++ +  + R   K +   + Y     G A          
Sbjct: 761 EAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYGISSFGLANQLGISRKEA 820

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494
           G  ++ + +       + +  +  + H                       ++      A+
Sbjct: 821 GNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAI 880

Query: 495 KDKLIGTACELVKKAWRA 512
              + G+A +++++A   
Sbjct: 881 NAPIQGSAADIIRRAMIQ 898


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/595 (17%), Positives = 198/595 (33%), Gaps = 95/595 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            ++ ID ET S       L  + +   A +A      ++    P +L D  +       L
Sbjct: 353 ERIGIDTETTSLDAMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQL-DLQDT---LGRL 408

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110
             +L + ++  +  N  +++ +F       I  +     ++LA         +GL   L 
Sbjct: 409 KPHLENGSLKKIGQNLKYDQHVFANY---GIALRGIAGDAMLASYIVESHLGHGLD-ELS 464

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L L    + +   +G   I+        +  Y    A+       F    +  + A 
Sbjct: 465 ERWLGLPTITYESLCGKGAKQISFADVAVEQAAEYAAQDAD-------FALRLEAHLRAQ 517

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +  K+L    + E  +  +   +   G  ID   +      +     KL+E   +    
Sbjct: 518 MD-EKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKLEEQAFQTAGQ 576

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289
              +      L+  LF   GI    + +     I  + + + QLA D  L ++     ++
Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPLPKIILENRSL 635

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E ++   GR+  T      + TGR +      QN+P +          
Sbjct: 636 AKLKSTYTDKLPEMINPRTGRVHTTYS-QAVAITGRLASSNPNLQNIPIRT--------- 685

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR    A  G  +V AD + IE R++A ++G+   + AF 
Sbjct: 686 ---------------AEGRRVRRAFTAPAGSLIVSADYSQIELRIMAHLSGDKTLMAAFQ 730

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
           NGED++  T A+ F    + VS EQR   K +   L Y  G    AK            +
Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790

Query: 460 QQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKL 498
            ++       + +    + E                     + +   +      A+   +
Sbjct: 791 DRYFARYPGVAEYIQRTKEEAAAQGYVETLFGRRLYLPDIRAKNANARAGAERAAINAPM 850

Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543
            GTA +L+K+A  A              ++Q+  +L         E       +V
Sbjct: 851 QGTASDLIKRAMIAVSSRLHSDGLESKLIMQVHDELVLEVVENELETVKEMLPQV 905


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/508 (18%), Positives = 169/508 (33%), Gaps = 94/508 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L   L          +  ++R +F +  GI++   +   T +++ T    +       LA
Sbjct: 333 LKPLLEASAPPKSGQHHKYDRHIFARA-GIELRGIKD-DTMLMSYTIDSTATRHNLDDLA 390

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  H T   E   GK      F +  +++                   Y   D + T 
Sbjct: 391 DYYLNHQTTTFEDIAGKGAKQLTFDQIPLETA----------------TAYACEDADITL 434

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L   L P             + E  L  L   I   G RID   +      I+ +   L
Sbjct: 435 RLKNHLAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAAL 494

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL--I 278
           +     L      +      L+  L+   G+ ++  +     S  +   + +LA+     
Sbjct: 495 EHAAHTLAGSPF-NLGSPKQLQEILYDQLGLPVLRKTPKGQPST-NEEVLAELAESHGAE 552

Query: 279 LNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L RL      + KL T     L E ++   GR+  +      + TGR S      QN+P 
Sbjct: 553 LPRLILEHRGLAKLKTTYTDRLPELINPHTGRIHTSY-HQAVTSTGRLSSSDPNLQNIPV 611

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +  +                           +R   IA +G +++ AD + IE R++A +
Sbjct: 612 RSEA------------------------GRRIRRAFIAEDGWQILAADYSQIELRIMAHL 647

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448
           + +   + AFA G+DI+  T A+ F    + VS+EQR   K +   L Y       A+  
Sbjct: 648 SADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMSAFGLARQL 707

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487
                     +  +         + D  +  +H                     +   + 
Sbjct: 708 NIPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGRRLYLPDINSKNPQRRQ 767

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                A+   + G+A +++K+A  A  +
Sbjct: 768 ASERLAINAPMQGSAADIIKRAMLAIDR 795


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/580 (18%), Positives = 192/580 (33%), Gaps = 109/580 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E   A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDTETTSLDPMVAQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLP----RDEVLAKLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +             LAL    
Sbjct: 395 LESAEHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLQSYVLESHRPHDMDNLALRHLG 452

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               K E+  GK      F + ++D                            T  L + 
Sbjct: 453 IKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQT 496

Query: 177 LIPLSDGERDLWLLDQT-----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P    E  L  + +            +   G  ID + + +    IA    +L+ +  
Sbjct: 497 LYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEIATRLIQLESEAY 556

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L  G   +      +    F    + +V  +     S      + +LA+D  L ++   
Sbjct: 557 VLAGGEF-NLGSPKQIGQIFFERLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLE 614

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   V++  GR+         + TGR +      QN+P +      
Sbjct: 615 HRGLSKLKSTYTDKLPRMVNANTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G KLV AD + IE R++A I+G++  +
Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF+ GEDI+  T A+ F+    +VS +QR + KV+   L Y       A          
Sbjct: 710 RAFSEGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAA 769

Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494
            L + ++       + + D            E      LW+          +      A+
Sbjct: 770 KLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
              + GTA +L+K +  A            + ++Q+  +L
Sbjct: 830 NAPMQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDEL 869


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/559 (17%), Positives = 184/559 (32%), Gaps = 90/559 (16%)

Query: 4   LFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAMPS 55
           + ID ET S       L  V +     +A      +       + PV++      +    
Sbjct: 340 IAIDTETSSTDATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQIP----VAEALE 395

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            +     D +V+ +  N  F+ I+  +  GI I               GL     +   A
Sbjct: 396 RIKALCEDPSVLKIGQNLKFDMIVLGE-RGISIAPHDDTIVMSFDLDAGLHGHGMDELAA 454

Query: 116 LNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEAT 170
            + S      +E    GK  +         +  Y    A+  ++ W+ F    +  +E  
Sbjct: 455 THLSHTCLAFKEVVGTGKKQLGFHEVDLKTATRYAAEDADVTLRLWKRFK--ARLPMEQA 512

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             +++        +R L  +   +  RG ++D + + +L    A +   L+ +I  L   
Sbjct: 513 TRVYEM------VDRPLVPVIANMERRGIKVDRERLSQLSTEFAGQIAGLEGEIHTLAGT 566

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-------LILNRLA 283
                     L   LF   G+      +  +      + + +LA+D        IL    
Sbjct: 567 PFTI-GSPKQLGEILFDRLGLKGGRKGKSGV-YSTDVTELERLARDGGEEIVRKILEWRQ 624

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S       + L   ++   GR+  +    GA +TGR S      QN+P +         
Sbjct: 625 LSKLKSTYTDALQAQINPKTGRVHTSYSLTGA-QTGRLSSTEPNLQNIPIRT-------- 675

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA +G  L+ AD + IE R+ A +A       AF
Sbjct: 676 ----------------EVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPALRDAF 719

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
           ANG+DI+  T  + F     +V+++ R   K +  A+ Y     G A      A      
Sbjct: 720 ANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLDVSADEAQAM 775

Query: 459 LQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDK 497
           + ++ +     + +                       + +  S +   +      A+   
Sbjct: 776 IDRYFERFPGINRYIAETLSSVREKGFTETLFGRKTHFPRIASRNQGERQGAERAAINAP 835

Query: 498 LIGTACELVKKAWRAKHQG 516
           + GT+ +++K+A       
Sbjct: 836 IQGTSADIIKRAMVRMEPA 854


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/581 (14%), Positives = 180/581 (30%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57
             L +D ET   +P+           A +   +++  +     V + D  E++  + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +   G+ +     +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKGA--LFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDI---------YRYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTSTGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +   S   + +                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/543 (16%), Positives = 181/543 (33%), Gaps = 96/543 (17%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A+ +   P +L    ++  + + L  +L +   + +  +  ++R +F    GI++    
Sbjct: 1   MAHRYPGAPEQL----DRDVVLAKLKPWLENPQALKLVQHIKYDRHVFANH-GIEVQGYA 55

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
              T + +           A LA         +          C    +   +D      
Sbjct: 56  -HDTMLQSYVLEADKPHGLASLAER------HLGRSGISFEDLCGKGANQISFDQVDI-- 106

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ----------TINDRGYRID 202
                   EY   D + T ++   L P  +    L  + +           I   G  ID
Sbjct: 107 ----AKAAEYACEDSDQTLDVHLVLWPQIEANDKLKFIYELEIASSEALYRIERNGVLID 162

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
              +      + Q   +L+ +  ++       S     L    F   G+ +V  +  T  
Sbjct: 163 APTLAAQSHELGQRILQLETEAYEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGA 220

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASR 316
                  + +LA+D  L        ++ KL     + L++ A+   GR+         + 
Sbjct: 221 RSTDEEVLEKLAEDYPLPAKLLEHRSLAKLKGTYTDKLAQLALPRTGRVHTHYA-QAVAV 279

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                              VR   +A+ G  +
Sbjct: 280 TGRLSSNDPNLQNIPIRT------------------------AEGRRVREAFVAAPGCVI 315

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
             AD + IE R++A I+ +   ++AF +G D++  T A+ F  P+D+VS EQR   KV+ 
Sbjct: 316 ASADYSQIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVIN 375

Query: 437 LALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY-- 489
             L Y       A+      +     +Q++ +      +  E   +      +++  +  
Sbjct: 376 FGLIYGMSAFGLARNLGIDNTAAKNYIQRYFERYPGVKAYMESTRELAKRQGYVETVFGR 435

Query: 490 ------------------PEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLW 521
                                A+   + GTA +L+K +               + ++Q+ 
Sbjct: 436 RLQLAGIKNAKGAQLAGLERAAINAPMQGTAADLIKLSMVKVQQVLDAQNKSTKMIMQVH 495

Query: 522 KDL 524
            +L
Sbjct: 496 DEL 498


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/580 (17%), Positives = 191/580 (32%), Gaps = 108/580 (18%)

Query: 5   FIDIETRS----PQPLPKVGV-WAYAEQAVITLC---AYAWDDEPVKLWDRTEQSAMPSD 56
            ID+ET S       +  + V +   E   I L    A   D++ V              
Sbjct: 321 AIDLETSSLDPFDCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEV-----------LKK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L + L D     V  N  F+  +    +   +        +++A     P+  K     L
Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPHFDTMIAAYLIEPNEKKFNLDDL 426

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  KM   + L+  F          D          +    Y   D + T  L+K 
Sbjct: 427 ALKFLGYKMTSYQELM-SFSSPLFGFSFVDV-------PLEKAANYSCEDADITYRLYKT 478

Query: 177 L-IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L + L +          E  L  +   +   G  +D + + KL E   ++ ++L E+I +
Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +      +      +   LF   GI     +  T         + +LA +  +  L    
Sbjct: 539 IAGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             I KL     + L + V+   GR+  +    G + TGR S      QNLP         
Sbjct: 598 RKIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP--------- 647

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R  I+       +V AD + IE R+LA ++G++  +
Sbjct: 648 ---------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLL 692

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHC 455
           +AF  G D++  T ++ FN   ++V++E R  GK++  ++ Y     G            
Sbjct: 693 RAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEA 752

Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494
              +  +         +                      D  Q  +     Q +    A+
Sbjct: 753 EKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAI 812

Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
              + GTA +++K A           + + + ++Q+  +L
Sbjct: 813 NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852



 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    +++ VHDE+V E PD    ++  L  
Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVK 869


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/600 (16%), Positives = 204/600 (34%), Gaps = 107/600 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
            +   D ET    PL           A I + ++A ++          D  E  A+   L
Sbjct: 366 KQFAFDTETDGLNPLT----------ASIVVASFAPEEGEAYYLPLPQDFDEACAILQPL 415

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              +R+  ++ +A N+ F++ L  +           +  +++A     P    N      
Sbjct: 416 DALMRNSEILKMAQNAKFDQKLLARYGVSSATP---LFDTLVAHYLIAPDQRHNL----- 467

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             + L +   G   IA        +       A      +L  +Y   D +  R L+  L
Sbjct: 468 --DTLAEQYLGYRTIAYSDLSEKKNFDLRRDVAE-----ELLVDYAAEDADVVRRLYPLL 520

Query: 178 IPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               + E+           L  + + +   G ++D+  + ++ E +  + ++ ++ I   
Sbjct: 521 REKLEQEQQEKLFWEVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIFHW 580

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      + + LF   G+        T     S   +++      + +      
Sbjct: 581 AGHSF-NVSSPKQVGVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKILDYR 639

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            + KL       L E V  DGRLR +      + TGR S      QN+P +         
Sbjct: 640 GLKKLIGTYTEALPELVYPDGRLRTSYN-QAVTVTGRLSSSDPNLQNIPIRS-------- 690

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +RS  +  + +   + AD + IE R++A  + ++  IKA
Sbjct: 691 ----------------AMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKA 734

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F  GED++ +T A+ +N   ++V+  QR+  K     + Y     G ++      S    
Sbjct: 735 FVEGEDVHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISAYGLSQRLNIDPSEASS 794

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496
            +  + +N  +   + D    ++  L                      ++      AV  
Sbjct: 795 LISSYFENYPAVRAYMDECVQKARKLGYTETLLGRRRYLPDINSRSATVRQFAERNAVNA 854

Query: 497 KLIGTACELVKKAW----------RAKHQGVLQLWKDLT-EGFACVVQEGGSISARRVAN 545
            + GTA +L+K A             K + ++Q+  +L  + +   V E  ++  + +  
Sbjct: 855 PIQGTAADLIKVAMIRIDAKMRERNMKSRMIMQVHDELNFDAYLPEVDELRALVHQEMCQ 914


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/581 (14%), Positives = 180/581 (30%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57
             L +D ET   +P+           A +   +++  +     V + D  E++  + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +   G+ +     +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKGA--LFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDI---------YRYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTSTGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +   S   + +                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/625 (15%), Positives = 194/625 (31%), Gaps = 116/625 (18%)

Query: 3   KLFIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA 52
           +L ID ET S  P+             G+  YA        A+ W  +  +      +  
Sbjct: 315 QLAIDTETTSLDPIRADLVGFSLCVSPGLAYYA------PLAHDWPADEPQ----APRRQ 364

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----S 108
               L Q L D  ++ +  N  ++  + ++     +     +  +++A     P+     
Sbjct: 365 ALDLLGQALADPGLLKIGQNLKYDLNVLRRA---GLSVAGPLFDTMVADYLLNPAKASHG 421

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L+           +   E        F +                   +    Y   D +
Sbjct: 422 LEAIAAEHLGRGVIGFEEAVGGKGKGFAQAPP----------------ERAVPYAAEDAD 465

Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              +  + L P  D           E  L  L   +   G  ID + + +L   + Q   
Sbjct: 466 VALQAAQALGPKLDEADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALA 525

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
             ++ I  L      +   T  L   LF   G+  V  ++         S +  LA    
Sbjct: 526 AGEQKIYALAGHEF-NINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHP 584

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L     +  A  KL     + L   ++ D GR+  +      + TGR S      QN+P 
Sbjct: 585 LPAEVLAYRANAKLKSTYVDALPALINPDTGRVHTSFNQC-VTATGRLSSSDPNLQNIP- 642

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                    G     +R C + + G+ LV AD + IE RVLA +
Sbjct: 643 -----------------------VRGELGRRMRGCFVPAPGRLLVSADYSQIELRVLAHL 679

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448
           + +   ++  A G D++  T A+ F+     V++E R   K +   + Y       A+  
Sbjct: 680 SQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLYGMSAFRLAREQ 739

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQD 487
               +     + ++    +  + F+                           S     ++
Sbjct: 740 GVSRAEAEDIIARYLGRYQGVARFQQQNLSQCRQRGYVTTILGRRRFLPAINSSDRQARE 799

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD------LTEGFACVVQEGGSISAR 541
                A+   + G+A +++K A     + + + + D      + +       EGG     
Sbjct: 800 AAERVALNTPIQGSAADIIKLAMLRVDEMLTRHYPDSPMILQVHDELVFETPEGGVEQFA 859

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSR 566
           +        + +   ++ + +   R
Sbjct: 860 QAVRRCMEDVLKLDVELKVDVGWGR 884



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 602 VQAISRDILCEGMKNATK---NGYD---IVLTVHDEIVSETPDT 639
           +Q  + DI+   M    +     Y    ++L VHDE+V ETP+ 
Sbjct: 810 IQGSAADIIKLAMLRVDEMLTRHYPDSPMILQVHDELVFETPEG 853


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/559 (18%), Positives = 193/559 (34%), Gaps = 88/559 (15%)

Query: 5   FIDIETRSPQPLPKVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET S  P+    V         +A     A+A+   P +L      + +   L  +
Sbjct: 361 AIDTETDSLDPMRARLVGISLSVAPGEAAYLPLAHAYPGAPEQLP----MAEVLERLRPW 416

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +     +  N+ ++R +F    G+ I       T + +             L    S 
Sbjct: 417 LENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSLV---SR 471

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HL + +       + C     +  +D        A  +   Y   D + T ++ +RL P 
Sbjct: 472 HLGRDDTLSYE--QVCGKGTKAITFD------QVALDVATRYSGEDADLTLQVHQRLWPQ 523

Query: 181 SDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                        E  +  + Q I   G  +D DL+      +  + + L+    +L  G
Sbjct: 524 IQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQAFELAGG 583

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +   LF    + +   +     S      + +LA+D  L R+     ++ 
Sbjct: 584 AF-NLGSPKQIGEILFDRLQLPVQKKTASGAPST-DEEVLEKLAEDYPLPRVILDHRSLS 641

Query: 291 KLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL +     L + ++ D GR+         + TGR +      QN+P +           
Sbjct: 642 KLKSTYTEKLPQMINPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 690

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G  +  +D + IE R++A ++ +   + AFA 
Sbjct: 691 --------------AEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAA 736

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GEDI+  T A+ F     +VS +QR + KV+   L Y       A+      S   L + 
Sbjct: 737 GEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYID 796

Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPE---------FAVKDKLIG 500
           ++       + + +            E      LW+ D +            A+   + G
Sbjct: 797 RYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHASGPRRAAAERAAINAPMQG 856

Query: 501 TACELVKKAWRAKHQGVLQ 519
           TA +L+K A  A    +++
Sbjct: 857 TAADLIKMAMIAVDAALMR 875


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/584 (17%), Positives = 194/584 (33%), Gaps = 114/584 (19%)

Query: 5   FIDIETRSPQPLPKV--GVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S  P+  V  G+   AE   A      + +   PV+L    ++    + L   
Sbjct: 346 ALDTETDSLDPMQAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPL 401

Query: 61  LRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           L D  V  V  +  ++  + ++          D   + ++ TS  AR +    +L    L
Sbjct: 402 LEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHD--MDTLARRHL 459

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +++  + +G   I             + TR            Y   D + T  L 
Sbjct: 460 GYETMKYVDLVGKGAKQI-----PFSHVGVQEATR------------YAAEDADITLRLH 502

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L P             + E  L  + + I   G +ID + + K    +++      + 
Sbjct: 503 CVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            + L      +      L++ LF    + +V  +     S    + +  +     L R+ 
Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL       L E +    GR+       GA+ TGR S      QN+P +    
Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A +G+KL+  D + IE R++A ++G+  
Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            + AF +G D++    A+ F   ID+V+  +R   K +   L Y       A+       
Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRG 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492
                +  +         F +  + ++      +                          
Sbjct: 776 EAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835

Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524
           A+   + GTA +++K+A             R +   +LQ+  +L
Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879



 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551
           A+  ++ G   + V    R   + +          F    Q G S   A+    +     
Sbjct: 729 AIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YLN+  S    +R    +   N  +Q  + DI
Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M          G+     ++L VHDE+V E  +    + V  + + M   
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/581 (14%), Positives = 180/581 (30%), Gaps = 108/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57
             L +D ET   +P+           A +   +++  +     V + D  E++  + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +   G+ +     +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKGA--LFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +    D               Y   D + T +L  
Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDI---------YRYACEDADVTLKLKN 531

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   I   G  +D + + +       + ++++++I 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   +  L     +      
Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTSTGRLSSSNPNLQNIPIR------ 703

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I   G     AD + IE R++A ++ +   I
Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T AK +   +  V  + R   K     + Y     G A+         
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +   S   + +                          S +  ++      A+
Sbjct: 806 KELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
              + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/580 (17%), Positives = 191/580 (32%), Gaps = 108/580 (18%)

Query: 5   FIDIETRS----PQPLPKVGV-WAYAEQAVITLC---AYAWDDEPVKLWDRTEQSAMPSD 56
            ID+ET S       +  + + +   E   I L    A   D++ V              
Sbjct: 321 AIDLETSSLDPFECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEV-----------LKK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L + L D     V  N  F+  +    +   I        +++A     P+  K     L
Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVL---MVKGIEPVPPHFDTMIAAYLIEPNEKKFNLDDL 426

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  KM   + L+  F          D          +    Y   D + T  L+K 
Sbjct: 427 ALKFLGYKMTSYQELM-SFSSPLFGFSFVDV-------PLEKAANYSCEDADITYRLYKT 478

Query: 177 L-IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L + L +          E  L  +   +   G  +D + + KL E   ++ ++L E+I +
Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +      +      +   LF   GI     +  T         + +LA +  +  L    
Sbjct: 539 IAGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             I KL     + L + V+   GR+  +    G + TGR S      QNLP         
Sbjct: 598 RKIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP--------- 647

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R  I+       +V AD + IE R+LA ++G++  +
Sbjct: 648 ---------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLL 692

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHC 455
           +AF  G D++  T ++ FN   ++V++E R  GK++  ++ Y     G            
Sbjct: 693 RAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEA 752

Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494
              +  +         +                      D  Q  +     Q +    A+
Sbjct: 753 EKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAI 812

Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
              + GTA +++K A           + + + ++Q+  +L
Sbjct: 813 NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852



 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    +++ VHDE+V E P+    ++  L  
Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVK 869


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/589 (14%), Positives = 189/589 (32%), Gaps = 110/589 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60
           + +D ET S   +           A +   ++A +++    V + ++  ++    D  + 
Sbjct: 357 ISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKFKA 406

Query: 61  L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116
           +  +   + V  N  ++  + +      I  +  +  +++A     P    ++       
Sbjct: 407 IYENPNTLKVGQNIKYDLEVLRNY---GIMLQGPLFDTMIAHYLLQPELRHNMDFMAEVY 463

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              E +       ALI    K   +      +             Y   D + T +L   
Sbjct: 464 LNYETVHID----ALIGAKGKTQKNMRELAPSEV---------YAYACEDADITLQLKNV 510

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P           ++ E  L  +   +   G RID   + +  ++  +   +L+++I +
Sbjct: 511 LQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ 570

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      +   LF    I        T + + S   +  L     +       
Sbjct: 571 AAGKTF-NVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDY 629

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            A+ KL     + L + ++   G +  +      + TGR S      QN+P         
Sbjct: 630 RALKKLLGTYVDALPKLINPRTGHIHTSFN-QAVTATGRLSSSDPNLQNIP--------- 679

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                            G     +R C I   G +   AD + IE RV+A ++ +   + 
Sbjct: 680 ---------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T AK ++ P+ +V++++R   K     + Y     G A       +   
Sbjct: 725 AFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAK 784

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             +  + +       + +                          S +  ++      A+ 
Sbjct: 785 QLIDGYFKMFPQVRDYMEQAKETAKANGYVETFFHRRRYLPDINSSNATVRGIAERNAIN 844

Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534
             + G+A +++K A             + + +LQ+  +L        +E
Sbjct: 845 APIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKE 893


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/589 (14%), Positives = 184/589 (31%), Gaps = 104/589 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57
               +D ET    P+           A +   ++++ +     V +    E++  + +  
Sbjct: 359 KFFSLDTETTGIDPIT----------AELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
                +   + +  N  ++ I+     G+ +  K +  T +                   
Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANY-GVTLKGKMF-DTMIAHYVLQPELRHGMD----Y 462

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +E   K E  K       KG       D          +   +Y   D + T +L + L
Sbjct: 463 LAEIYLKYETIKIEELIGAKGKKQGNMRDLAP-------EAVYKYACEDADVTLKLKQVL 515

Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L  +   +   G RID + + +          +++E++ +L
Sbjct: 516 ENELETNGVKKLFEEIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQL 575

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  +     +   LF    I        T + + S   +  L     +        
Sbjct: 576 AGMEFNIA-SPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 634

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + ++   GR+  +      + TGR S      QN+P +        
Sbjct: 635 GLKKLLGTYIDALPQLINPATGRIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED----- 688

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I   G +   AD + IE R++A ++ +   I+A
Sbjct: 689 -------------------GKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEA 729

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F   +DI+  T AK +   +++V++EQR+  K     + Y     G A+           
Sbjct: 730 FQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAKA 789

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496
            +  + +N  +   + D    E+                         ++      A+  
Sbjct: 790 LIDGYFENYPNVKAYMDQSIQEAREKGYIETIFKRKRYLPDINSKNAVVRGYAERNAINA 849

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
            + G+A +++K A    +Q           +LQ+  +L        +E 
Sbjct: 850 PIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKEK 898


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/574 (17%), Positives = 174/574 (30%), Gaps = 111/574 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-----AMPSDL- 57
           + +D ET S Q          A  A +   ++A             +S       P  L 
Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385

Query: 58  --------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLP 106
                      L D       HN  ++  + ++  GI++       + +LA        P
Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIA-ADSMLLAYCLYPAKYP 443

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            SL +       + H T   E     A+  +   D  P                 Y   D
Sbjct: 444 PSLDSVAED-YLNYHCTPYSEVAGKGAK--QVCFDEVPVSIA-----------TPYACED 489

Query: 167 VEATREL----------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            +    L            RL    + E  L  +   I   G  +D +++  L       
Sbjct: 490 ADIALRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLR 549

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
             +L+  I         + +    L + LF    I     ++   +       + +LA +
Sbjct: 550 IAELESQIHAAAGEKF-NIQSPKQLGVLLFETLAIPGGKKTKSG-QWATGQEVLEKLADE 607

Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + RL      + KL     + L + +  + GR+  +      + TGR S      QN+
Sbjct: 608 HEVPRLILQVRQLAKLKSTYTDALPKLIHRTTGRVHTSFN-QAITTTGRLSSSDPNLQNI 666

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   IA  G  L+ AD + IE R++A
Sbjct: 667 PIRS------------------------AEGREIRKAFIAEEGHTLLAADYSQIELRLMA 702

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
             +G+     AFANGEDI+  T A      ++ VS E R   K +   + Y       AK
Sbjct: 703 HFSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAFGLAK 762

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WM 485
                       +  + +   S   F D     +                          
Sbjct: 763 QLNISRGEAQTFIDTYFERYPSVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSSNGMR 822

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           +      A+   L G+A +++K A    H+ + Q
Sbjct: 823 RAYAERTAINAPLQGSAADIIKVAMIHLHRRLRQ 856



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 11/124 (8%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGKL 597
            A+   +         +  +   L  +R   Y +   G   Y+   +S     R Y  + 
Sbjct: 770 EAQTFIDTYFERYPSVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSSNGMRRAYAERT 829

Query: 598 TENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
             N  +Q  + DI+   M               I+L VHDE++ E P      +  + ++
Sbjct: 830 AINAPLQGSAADIIKVAMIHLHRRLRQEAPAAAIILQVHDELIVEAPVDQ---IDAVSAI 886

Query: 651 MTKN 654
           M + 
Sbjct: 887 MRQT 890


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/580 (18%), Positives = 192/580 (33%), Gaps = 109/580 (18%)

Query: 5   FIDIETRSPQPLPK--VGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+     A  A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDTETTSLDPMTAQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLP----RDEVLAKLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +             LAL    
Sbjct: 395 LESAKHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNLALRHLG 452

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               K E+  GK      F + ++D                            T  L + 
Sbjct: 453 VKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQT 496

Query: 177 LIPLSDGERDLWLLDQT-----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P    E+ L  + +            +   G  ID + +      IA    +L+ +  
Sbjct: 497 LYPQLAAEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAY 556

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L  G   +      +    F    + +V  +     S      + +LA+D  L ++   
Sbjct: 557 VLAGGEF-NLGSPKQIGQIFFERLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLE 614

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   V++  GR+         + TGR +      QN+P +      
Sbjct: 615 HRGLSKLKSTYTDKLPRMVNASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G KLV AD + IE R++A I+G++  +
Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF+ GEDI+  T A+ F+    +VS +QR + KV+   L Y       A          
Sbjct: 710 RAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAA 769

Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494
            L + ++       + + D            E      LW+          +      A+
Sbjct: 770 KLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
              + GTA +L+K +  A            + ++Q+  +L
Sbjct: 830 NAPMQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDEL 869


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 107/592 (18%), Positives = 191/592 (32%), Gaps = 115/592 (19%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
           D ET S  P+    VG+    E  +A     A+     P    D  EQ  +   L +   
Sbjct: 345 DTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHR---GP----DLPEQLPLDEVLARLKP 397

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118
            L       V  +  ++  +     GI++       T + +       +     LAL   
Sbjct: 398 WLESADRKKVGQHLKYDAQVLANY-GIELSGIE-HDTLLESYVLESHRTHDMDSLALRHL 455

Query: 119 SEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                K E+  GK      F + ++                             T +L  
Sbjct: 456 GVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------------ITLQLHH 499

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P             + E  + ++ + +   G  ID   +      IA    +L+   
Sbjct: 500 ALYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVELEAQA 559

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L  G   +      +    F    + +V  +     S      + +LA+D  L +L  
Sbjct: 560 YELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLL 617

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   V+   GR+         + TGR +      QN+P +     
Sbjct: 618 EHRGLSKLKSTYTDKLPRMVNPETGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IAS G ++V AD + IE R++A I+G+   
Sbjct: 673 --------------------AEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGDASL 712

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           ++AF+NGEDI+  T A+ F     +V+ +QR I KV+   L Y       A         
Sbjct: 713 LRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINFGLIYGMSAFGLASNLGITRDA 772

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493
             L + ++       + + +  +A +             LW+          +      A
Sbjct: 773 AKLYIDRYFARYPGVAQYMEDTRAIAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAA 832

Query: 494 VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
           +   + GTA +L+K +  A            + ++Q+  +L           
Sbjct: 833 INAPMQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVHDELVLEVPEAELPR 884


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 107/588 (18%), Positives = 197/588 (33%), Gaps = 95/588 (16%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +
Sbjct: 345 SFDTETTSLDPMVAQIVGISLSTEPGSAAYIPVAHRGPDAPEQLP----RDEVLAKLKPW 400

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +      I +       T + +       +     LAL    
Sbjct: 401 LESAERRKVGQHLKYDAQVLANY-EIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLG 458

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDC------TRANHVQAWQLFGEYCKRDVEAT 170
               K EE  GK      F +  +++           T   H+  +          V   
Sbjct: 459 VKTIKYEEVAGKGAQQIGFDEVPLETAAAYAAEDADITLQLHLAMYPQ--------VARE 510

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             L +     ++ E  + L+ + +   G  ID   + K    IA    +L+ +  +L  G
Sbjct: 511 PGLKRV---YAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIELEREAYELAGG 567

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +    F    + +V  +     S      + +LA+D  L +L      + 
Sbjct: 568 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHRGLS 625

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   +++  GR+         + TGR +      QN+P +           
Sbjct: 626 KLKSTYTDKLPRMINARTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 674

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IAS G ++V AD + IE R++A I+ ++  ++AF+ 
Sbjct: 675 --------------AEGRRIREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQ 720

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GEDI+  T A+ F     +VS +QR I KV+   L Y       A           L + 
Sbjct: 721 GEDIHRATAAEVFGVTPLEVSNDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 780

Query: 461 QFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLI 499
           ++       + + +  +A +             LW+          +      A+   + 
Sbjct: 781 RYFARYPGVANYMETTRAVAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 840

Query: 500 GTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           GTA +L+K        W  + +   ++   + +     V E      R
Sbjct: 841 GTAADLIKLSMIAVDGWLERDKLRSRMIMQVHDELVLEVPEDELALVR 888


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/508 (14%), Positives = 152/508 (29%), Gaps = 89/508 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  ++ V  N  ++  + K+  GID+               GL     +    L
Sbjct: 427 LKPVLENRNILKVGQNIKYDLSVLKRY-GIDVAPYDDTMLMSYVVEGGLHGHGMDELSQL 485

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +        ++                     ++    A +   +Y   D + T  L+  
Sbjct: 486 HLGHTPIPFKQVAGSGKTL-------------KSFKFVALKEATQYAAEDADVTLRLWHV 532

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P              ER +      +   G R+D  ++  L +        ++++   
Sbjct: 533 LKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQDFGTRMNAIEQEAHA 592

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----------- 275
                  +      L +  F    +     +    +       +  +A+           
Sbjct: 593 HLGRPF-NLNSPQQLGVVFFDEMKLPGGKRTASG-QWATDVKVLEDIAEGKNGTGAGQTL 650

Query: 276 -DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L+    +       + L E       R+  +     ++ TGR +      QN+P +
Sbjct: 651 AKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHL-ASTTTGRLASNEPNLQNIPIR 709

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R+  IA  G KL+ AD + IE R+LA I 
Sbjct: 710 T------------------------GEGRKIRTAFIAKPGCKLISADYSQIELRLLAHIG 745

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
             +   KAF++G+DI+  T ++ F  P+  ++ E R   K +   + Y     G A    
Sbjct: 746 DIEQLKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINFGIIYGISGFGLANQLG 805

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    ++ + +       + D                       +       ++  
Sbjct: 806 IDQGEASRYIKTYFERFPGIKDYMDATKQFLRDNGFVQTLMGRKIHIPEINGKGGAIKAF 865

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQG 516
               A+   + GTA +++++A       
Sbjct: 866 AERAAINAPIQGTAADIIRRAMMRMQPR 893


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/500 (17%), Positives = 153/500 (30%), Gaps = 84/500 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
             L   L D  V+ + HN+ ++  +  +     +DI           +   G      + 
Sbjct: 441 EALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYSMDAGRHGHGMDE 500

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +        +E         +  I        +A           Y   D + T  
Sbjct: 501 LSLRHLGHRPIPFDEVTGT----GRARIPFSQVALDKATA---------YAAEDADVTLR 547

Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L++ L P              ER +  + + +   G ++D   + ++ E  +Q    L++
Sbjct: 548 LWQALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELARIGEDFSQRMVVLEQ 607

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILNR 281
           +I +L      +      L   LF    +      +         S +  LA +   L R
Sbjct: 608 EIHELAGKPF-NVGSPKQLGEILFDEQKLPGGKRGKNG-AWGTDASVLEDLAARGHELPR 665

Query: 282 LASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                  + KL +     L+  +   DGR+         + TGR S      QN+P +  
Sbjct: 666 RVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSM-AVTSTGRLSSTEPNLQNIPIRT- 723

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G  L+ AD + IE R+LA +A  
Sbjct: 724 -----------------------EEGVRIRRAFVAEPGHVLLAADYSQIELRLLAHLADV 760

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
                AFA GEDI+  T A  F    DKV KE R   K +   + Y       A      
Sbjct: 761 PSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSAFGLAARLGIG 820

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-----------LWM----------QDQYP 490
                  +  +           +  ++E+             LW+          +    
Sbjct: 821 PGEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGRKLWIDGIQAKEQARRGNAE 880

Query: 491 EFAVKDKLIGTACELVKKAW 510
             A+     G A E++K+A 
Sbjct: 881 RAAINAPFQGGAAEIIKRAM 900


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/591 (17%), Positives = 194/591 (32%), Gaps = 110/591 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQSAMPSD 56
             L +D ET S  P+          +A +   ++A   EP     V +  + E +     
Sbjct: 348 KILSLDTETTSTNPM----------EAELVGLSFAV--EPKKAFYVPVPAKHEDAVNLVK 395

Query: 57  LLQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACL 114
           + + L  +E ++ V  N  ++  + +      I  K  +  +++A     P        +
Sbjct: 396 IFKPLYENEEIVKVGQNIKYDMEVLRNY---GIELKGPMFDTMIAHYVLQPELRHNMDYM 452

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A  +  + T   E   LI    K   +      T             Y   D + T +L 
Sbjct: 453 AEVYLNYQTIHIE--KLIGERGKNQKNMRDLSPTDV---------YLYACEDADITLQLK 501

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G RID + + +  E   +    L+  I
Sbjct: 502 NALEPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      +   LF    I        T + + S   + + A    +  L  
Sbjct: 562 HELAGESF-NVSSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAGNEIVTLIL 620

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 DYRGLKKLLGTYVDALPKLINPRTGHIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G     +R C I  +G     AD + IE RV+A ++G+   
Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF +G DI+  T AK +   +  V++++R   K     + Y     G A+      + 
Sbjct: 716 IEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRNE 775

Query: 455 CGLDLQQFS----------QNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA 493
               +  +           +  K+T+  + +               S +  ++      A
Sbjct: 776 AKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETFFHRRRYLPDINSRNATVRGFAERNA 835

Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534
           +   + G+A +++K A             + + +LQ+  +L        +E
Sbjct: 836 INAPIQGSAADIIKVAMIRIYKRFKRENIQSKMILQVHDELNFSVLPEEKE 886


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 108/548 (19%), Positives = 185/548 (33%), Gaps = 87/548 (15%)

Query: 49  EQSAMP-SDLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           E   +P +D++  L     D  +   AHN+ F+  +    +GI +    +  T + A   
Sbjct: 396 EGEQLPLADVVAALGPLFADPNIPKFAHNAKFDAEVLA-GVGIQVAGLAF-DTMIAAAML 453

Query: 104 GLPSSLKNACLA-LNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           G    LK+     L   E        +  G   I  F    I+                 
Sbjct: 454 GKRQGLKDLAFYELKLPEPPTTIEDLIGRGSKQI-SFAAVPIEQAAPYAAADALHTLLLT 512

Query: 159 FGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                +   + A R+L+ R       E  L  +   +   G  +D + + +L +  AQ  
Sbjct: 513 ETLRGQLTTDTALRDLYYR------VELPLIDVLTDMELTGILLDHEYLRELGKRFAQRI 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS---------ILSHS 268
            +L E I     G   +      L   LF   GI+  D     LKS         +   S
Sbjct: 567 AELTEQIYAKAGGPF-NINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELS 625

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +  +A D++  R   +      ++ L + V+   GR+  +    GA+ TGR S      
Sbjct: 626 QLYPIAADILAYRQ-LTKLKSTYIDALPQLVNPRTGRIHTSYNQIGAA-TGRLSSNNPNL 683

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   +A+ G + V AD + IE R
Sbjct: 684 QNIPVRT------------------------EEGREIRRAFVAAPGHRFVAADYSQIELR 719

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443
           VLA I+G++  I AF  G DI+  T ++ F    D+V K QR + K +   + Y     G
Sbjct: 720 VLAHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIYGISAFG 779

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQYPE----------- 491
            A+            +    +       + D   A    H ++Q  +             
Sbjct: 780 LAQRLGIERDLARQLIDNLFEQFPGIRRYIDQTLAFGRQHGYVQTLFGRRRVMEDLRASG 839

Query: 492 --------FAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGS 537
                    A+   + GTA +++K A    H+         +L   + +       E   
Sbjct: 840 ARRAAAEREAINAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEV 899

Query: 538 ISARRVAN 545
            +A  +  
Sbjct: 900 PAAAHLLR 907



 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    +   + G    ++L VHDE+++E P+    +   L   +M+  
Sbjct: 854 IQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEVPAAAHLLREVMSNT 913


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/579 (17%), Positives = 188/579 (32%), Gaps = 106/579 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57
            ID+ET S  P              I   + ++  +               ++  +   L
Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L D     V  N  F+  +    +   +        +++A     P+  K     L 
Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPHFDTMIAAYLLEPNEKKFNLDDLA 427

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 KM   + L+  F          D          +    Y   D + T  L+K L
Sbjct: 428 LKFLGYKMTSYQELM-SFSSPLFGFSFADV-------PVEKAANYSCEDADITYRLYKIL 479

Query: 178 -IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            + L +          E  L  +   +   G  +D + + KL E   ++ ++L E+I ++
Sbjct: 480 SLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRI 539

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      +   LF   GI     +  T         + +LA +  +  L     
Sbjct: 540 AGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYR 598

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            I KL     + L + V+   GR+  +    G + TGR S      QNLP          
Sbjct: 599 KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP---------- 647

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R  I+       +V AD + IE R+LA ++G++  +K
Sbjct: 648 --------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLK 693

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHCG 456
           AF  G D++  T ++ FN   ++V++E R  GK++  ++ Y     G             
Sbjct: 694 AFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAE 753

Query: 457 LDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVK 495
             +  +         +                      D  Q  +     Q +    A+ 
Sbjct: 754 KMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAIN 813

Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
             + GTA +++K A           + + + ++Q+  +L
Sbjct: 814 TPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    +++ VHDE+V E PD    ++  L  
Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVK 869


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/493 (16%), Positives = 152/493 (30%), Gaps = 85/493 (17%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTSVLARTNGLPSSLKNACLALNF 118
           +D+ V+ + HN+ F+ ++     GI + S            +++ GL     +   A++ 
Sbjct: 413 QDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSAMHL 471

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           S      +          +      P                +Y   D + T  L+  L 
Sbjct: 472 SHTPISYDSVTGTGR--NRLPFAQVPVATA-----------TKYAAEDADVTLRLWHVLH 518

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P              ER L  +   +   G  +D   + +L +      + ++ DI +  
Sbjct: 519 PTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEARMQGMENDIYEAA 578

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRL 282
                +      L   LF   G+      +         S +  LA         IL   
Sbjct: 579 GRQF-NIGSPKQLGEILFDEMGLKGGKRGKAG-AWSTDSSVLQDLADQGHDLPARILAWR 636

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +       + L      + R+  + Q    + TGR S      QN+P +         
Sbjct: 637 QLAKLKSTYTDALLRQAGRNDRVHTSFQM-AITSTGRLSSTDPNLQNIPVRT-------- 687

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  GKKL+ AD + IE R+LA +A      +AF
Sbjct: 688 ----------------EEGTRIRQAFIAPPGKKLISADYSQIELRLLADVANIPALREAF 731

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLD 458
             G+DI+  T ++ FN P++ +    R   K +   + Y   A    K     A      
Sbjct: 732 QLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTY 791

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  +         + +  + E+                          +      A+   
Sbjct: 792 IDAYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAP 851

Query: 498 LIGTACELVKKAW 510
           L G A +++K+A 
Sbjct: 852 LQGGAADIIKRAM 864


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/580 (18%), Positives = 195/580 (33%), Gaps = 109/580 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E  +A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDTETTSLDPMTAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLARLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +       +     LAL    
Sbjct: 395 LESAEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSLALRHLG 452

Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               K EE  GK      F + ++D                            T  L + 
Sbjct: 453 VKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQA 496

Query: 177 LIPLSDGERDLWLLDQT-----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L P    E+ L  + +            +   G  ID + +      IA    +L+ +  
Sbjct: 497 LYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQSSEIATRLIQLESEAY 556

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L  G   +      +    F    + +V  +     S      + +LA+D  L ++   
Sbjct: 557 VLAGGEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLE 614

Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   V++  GR+         + TGR +      QN+P +      
Sbjct: 615 HRGLSKLKSTYTDKLPRMVNATTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G KLV AD + IE R++A I+G++  +
Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF+ GEDI+  T A+ F+    +VS +QR + KV+   L Y       A          
Sbjct: 710 RAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLAANLGITRDAA 769

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAV 494
            L + ++       + + D  +  +             LW+          +      A+
Sbjct: 770 KLYIDRYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
              + GTA +L+K +  A            + ++Q+  +L
Sbjct: 830 NAPMQGTAADLIKLSMIAVQNWIEESKIGTRMIMQVHDEL 869


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/567 (17%), Positives = 194/567 (34%), Gaps = 87/567 (15%)

Query: 7   DIETRSPQPLPKVG----VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D+ET S            V+   + +      + + D P +L D  + + +   L   L+
Sbjct: 344 DLETTS-LDYMNAAIVGWVFLVDKDSFYVPVGHDYLDAPKQL-DF-DDALL--TLKPILQ 398

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121
           DE++  V  N  ++  +      ID+       T V +     + +      L++++  H
Sbjct: 399 DESINKVGQNLKYDAHVLANY-QIDLNGISD-DTMVKSYVLNSVATRHNMDDLSMHYLNH 456

Query: 122 LTK-----MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            T        +GK  I     G   + PY C     V       +    D+    +L K 
Sbjct: 457 QTIHFSDVAGKGKKQITFNQVGLEAAFPYAC---EDVIVTHELNKVLDEDIVQYPKLVKL 513

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              L   E  L  +   +   G  ID  L+   Q  + ++  ++     +L         
Sbjct: 514 YQVL---EMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQMNEIQSQAFELAGDAFNLE- 569

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----DLILNRLASSGSAILKL 292
               ++  LF   G+ L    +    +  ++    +L      DLIL+    +      L
Sbjct: 570 SPKQIQQILFSEEGLGLEAKKKTPKGAPSTNEEALKLLDHPLVDLILSYRTLTKLNSTYL 629

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +  + +   T      + TGR S      QN+P +                   
Sbjct: 630 EALPKQIDLNTKRLHTSYHQAVTATGRLSSSNPNLQNIPIRT------------------ 671

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   IA  G  ++ AD + IE R++A I+ +   I+AF N  D++  T
Sbjct: 672 ------ELGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSLIEAFNNDVDVHSAT 725

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468
            +  FN PI++V+K+ R   K +   L Y       AK      +     +  + +N   
Sbjct: 726 ASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSAFGLAKQINVSRTEAKQYIDAYFENYPG 785

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + D                       Q  + +  +Q      A+   + G++ +++K
Sbjct: 786 VLNYMDNIREAAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQGSSADIIK 845

Query: 508 KAWRAKHQ----------GVLQLWKDL 524
           KA    H+           ++Q+  +L
Sbjct: 846 KAMLDVHEWIGDGNDEIKMIMQVHDEL 872


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/569 (18%), Positives = 191/569 (33%), Gaps = 100/569 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S   +    VG+    E   A     A+   D   +L     ++ + + L  +
Sbjct: 333 ALDTETTSLDQMQARLVGLSLAVEPGVACYIPVAHRGPDGATQLP----KAEVLARLKPW 388

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D +   + H++ ++  +F    GI +       T + A        +    LA  +  
Sbjct: 389 LEDASRAKLLHHAKYDAHVFANE-GIALAGITD-DTMLQAYVLESHRGVGLNDLAQRYL- 445

Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  G++ I+    C        +D    +        G Y   D + T +L   L 
Sbjct: 446 -------GRSGISYEDLCGKGAKQIGFDEVAVD------KAGHYAAEDADFTLQLHHVLR 492

Query: 179 PLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P+      L  + Q          TI   G ++D + + +    + QE  +L++   +L 
Sbjct: 493 PMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRLEQKAYELA 552

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L   LF    + +V  +     S      +T+LA D  L ++      
Sbjct: 553 GQPF-NLNSPKQLGEILFDRMQLPVVRKTASGAPST-DEDVLTKLALDYPLPQVLLEYRG 610

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   ++   GR+        A  TGR +      QN+P +  +      
Sbjct: 611 LSKLKSTYTDKLPRMINPATGRVHTRYS-QAAVITGRLASSDPNLQNIPVRTEA------ 663

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR   IA  G  L+ AD + IE R++A ++ +     AF
Sbjct: 664 ------------------GRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQSAF 704

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           A GEDI+  T A+ F   +  VS +QR   K +   L Y  G    A             
Sbjct: 705 AAGEDIHRATAAEVFGVALADVSTDQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAY 764

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           + ++       + + +  +  +      +                          A+   
Sbjct: 765 IDRYFARYPGVAMYMENTRRLAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAP 824

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTE 526
           + GTA +L+K A  A     +Q W +  +
Sbjct: 825 MQGTAADLIKLAMVA-----VQDWLEAEK 848


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/582 (18%), Positives = 191/582 (32%), Gaps = 117/582 (20%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
           D ET S  P+    VG+    E  +A     A+     P    D  EQ  +   L +   
Sbjct: 345 DTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHR---GP----DLPEQLPLDDVLARLKP 397

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALN- 117
            L       V  +  ++  +       DI        T + +       +     LAL  
Sbjct: 398 WLEAADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVLESHRTHDMDSLALRH 454

Query: 118 FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                 K E+  GK      F + ++D                            T +L 
Sbjct: 455 LGVKTIKYEDVAGKGAKQIGFDEVALDQAAAYAAEDAD----------------ITLQLH 498

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L P             + E  + L+ + +   G  ID  L+      IA    +L+  
Sbjct: 499 HVLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIELEGQ 558

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +L  G   +      +    F    + +V  +     S      + +LA+D  L +L 
Sbjct: 559 AYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLL 616

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   V+   GR+         + TGR +      QN+P +    
Sbjct: 617 LEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLASNEPNLQNIPVRT--- 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IAS G ++V AD + IE R++A I+G+  
Sbjct: 673 ---------------------AEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y       A        
Sbjct: 712 LLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRD 771

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEF 492
              L + ++       + + +  +A +             LW+          +      
Sbjct: 772 AAKLYIDRYFARYPGVAQYMEDTRAAAKDQGYVETVFGRRLWLPEINGGNGPRRQAAERA 831

Query: 493 AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
           A+   + GTA +L+K +           R   + ++Q+  +L
Sbjct: 832 AINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 106/583 (18%), Positives = 195/583 (33%), Gaps = 101/583 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E   A     A+   D P +L     +  + + L  +
Sbjct: 343 SFDTETTSLDPMVAQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLP----RDEVLAKLKPW 398

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALN-F 118
           L +     V  +  ++  +       DI        T + +       +     LAL   
Sbjct: 399 LENPARKKVGQHLKYDAQVLANY---DIALNGVEHDTLLESYVLESHRTHDMDSLALRHL 455

Query: 119 SEHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                K E+         G   +A     +  +   D T   H   +          VE 
Sbjct: 456 GVKTIKYEDVAGKGAQQIGFDEVALDVAAAYAAEDADITLQLHRVMYPQ--------VER 507

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L +     ++ E  +  + + +   G  ID   +      IA    +L+ +   L  
Sbjct: 508 EAGLKRV---YTEIELPVSFVLRKMERTGVLIDSGRLEAQSREIAVRLVELEREAYALAG 564

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G   +      +    F    + +V  +     S      + +LA+D  L +L      +
Sbjct: 565 GEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHRGL 622

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L   +++  GR+         + TGR +      QN+P +          
Sbjct: 623 SKLKSTYTDKLPRMINASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT--------- 672

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA+ G K+V AD + IE R++A I+G++  ++AF+
Sbjct: 673 ---------------AEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFS 717

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            GEDI+  T A+ F     +VS +QR I KV+   L Y       A           L +
Sbjct: 718 QGEDIHRATAAEVFGVTPLEVSTDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYI 777

Query: 460 QQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKL 498
            ++       + + +  +A +             LW+          +      A+   +
Sbjct: 778 DRYFARYPGVANYMETTRASAKAQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPM 837

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531
            GTA +L+K +  A          + + ++Q+  +L       
Sbjct: 838 QGTAADLIKLSMIAVDGWLERDGLRSRMIMQVHDELVLEVPDA 880


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 100/593 (16%), Positives = 191/593 (32%), Gaps = 112/593 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSD 56
             + ID ET S           YA  A +   ++A ++      PV   DR E   + + 
Sbjct: 348 QTVSIDTETTS----------LYAMDAELVGLSFAVEERQAFYVPVPA-DRKEAEKIVNI 396

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
                  E +M V  N  ++  + +   G+ +     +  +++A     P    ++    
Sbjct: 397 FKPLYESEAIMKVGQNMKYDLEVLRNY-GVCLRGA--LFDTMIAHYLIQPELRHNMDYMA 453

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                +     ++    LI    KG       + + A          EY   D + T +L
Sbjct: 454 EV-YLNYQTIHID---TLIG--AKGKHQKSMRELSPA-------QVYEYAAEDADITLQL 500

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L P              E  L  +   +   G RID   + +  +++ +    L+  
Sbjct: 501 KNVLEPKLREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEAR 560

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I +L  G    +     +   LF    I        T + + S   + QL     +    
Sbjct: 561 IYELAGGEFNIA-SPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDI 619

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L + +++  GR+  +      + TGR S      QN+P      
Sbjct: 620 LDYRGLKKLLGTYVDALPKLINTRTGRIHTSFN-QTVTATGRLSSSEPNLQNIP------ 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                               G     +R   I   G     AD + IE RV+A ++G+  
Sbjct: 673 ------------------VRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAH 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I+AF  G DI+  T AK +   ++ V++++R   K     + Y     G A+      +
Sbjct: 715 MIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITVFGLAERLDIDRN 774

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                +  +         + +                          SH+  ++      
Sbjct: 775 EAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIFHRRRYLPDINSHNATVRGFAERN 834

Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
           A+   + G+A +++K A             + + +LQ+  +L        +E 
Sbjct: 835 AINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSVFPEEKER 887


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 108/575 (18%), Positives = 195/575 (33%), Gaps = 99/575 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E  +A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDTETTSLDPMIAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLARLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +       +     LAL    
Sbjct: 395 LESVEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSLALRHLG 452

Query: 120 EHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               K EE         G   +A        +   D T   H   +          V A 
Sbjct: 453 VKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQVLYPQ--------VAAE 504

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + L        D E     + + +   G  ID + + +    IA    +L+ +   L  G
Sbjct: 505 KTLQ---YVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +    F    + +V  +     S      + +LA+D  L ++      + 
Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDFPLPKILLEHRGLS 619

Query: 291 KL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   V++  GR+         + TGR +      QN+P +           
Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G KLV AD + IE R++A I+G++  +++F+ 
Sbjct: 669 --------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQ 714

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GEDI+  T A+ F+    +VS +QR + KV+   L Y       A           L + 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 461 QFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLI 499
           ++       + + D  +  +             LW+          +      A+   + 
Sbjct: 775 RYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524
           GTA +L+K +  A            + ++Q+  +L
Sbjct: 835 GTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDEL 869


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 108/575 (18%), Positives = 194/575 (33%), Gaps = 99/575 (17%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S  P+    VG+    E  +A     A+   D PV+L     +  + + L  +
Sbjct: 339 SFDTETTSLDPMIAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLARLKPW 394

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119
           L       V  +  ++  +     GI++       T + +       +     LAL    
Sbjct: 395 LESAGHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSLALRHLG 452

Query: 120 EHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               K EE         G   +A        +   D T   H   +          V A 
Sbjct: 453 VKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQVLYPQ--------VAAE 504

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + L        D E     + + +   G  ID + + +    IA    +L+ +   L  G
Sbjct: 505 KTLQ---YVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +    F    + +V  +     S      + +LA+D  L ++      + 
Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDFPLPKILLEHRGLS 619

Query: 291 KL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   V++  GR+         + TGR +      QN+P +           
Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G KLV AD + IE R++A I+G++  + +F+ 
Sbjct: 669 --------------GEGRRIREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQ 714

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GEDI+  T A+ F+    +VS +QR + KV+   L Y       A           L + 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 461 QFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLI 499
           ++       + + D  +  +             LW+          +      A+   + 
Sbjct: 775 RYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524
           GTA +L+K +  A            + ++Q+  +L
Sbjct: 835 GTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDEL 869


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 188/576 (32%), Gaps = 100/576 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            ++ +D ET S  P+    V       A  AV    A+         W     S  P   
Sbjct: 352 RQIGLDTETNSLDPMTAKLVGISMAFAAGDAVYIPVAHTL--AEQLDWQEISGSLKP--- 406

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             +L D+ +  +  N  +++ +FK   GID+         + +       S     LA+ 
Sbjct: 407 --FLEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIA-GDAMLASYIVESHLSHNLDDLAMR 462

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +    T   E        C        +               EY  +D +    + + L
Sbjct: 463 WLGLETISYES------LCGKGAKQISFADVNV------AQATEYACQDADFALRIEQHL 510

Query: 178 IP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                        + E  +  +   +   G  +D   + +    +  E  +L++    L 
Sbjct: 511 RTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQQAYDLA 570

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGS 287
                +      L+  LF   GI    + +          S + +LA D  L +L     
Sbjct: 571 GQPF-NLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPKLILQNR 629

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL     + L E ++   GR+         + TGR +      QN+P + +      
Sbjct: 630 SLAKLKSTYTDKLPEMINPQTGRVHTNYA-QAVAITGRLASNNPNLQNIPIRTK------ 682

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 VR    A +G  +V AD + IE R++A ++G+     A
Sbjct: 683 ------------------QGRRVRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAA 724

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F N ED++  T A+ F    +K++ EQR   K +   L Y  G    AK          +
Sbjct: 725 FQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMGEYGLAKSLGIDNVSAAM 784

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++++       + +                            S+H   +      A+  
Sbjct: 785 FIKRYFARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGAERAAINA 844

Query: 497 KLIGTACELVKKA--------WRAKHQGVLQLWKDL 524
            + GTA +L+KKA           K + V+Q+  +L
Sbjct: 845 PMQGTASDLIKKAMIDVSKFLMNQKSRLVMQVHDEL 880



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
            VA   +      ++   +     R+L   D+  + +          R            
Sbjct: 795 GVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGA---ERAAINAP------ 845

Query: 602 VQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPS 656
           +Q  + D++ + M + +K        +V+ VHDE+V E  ++    +   L  +M++  +
Sbjct: 846 MQGTASDLIKKAMIDVSKFLMNQKSRLVMQVHDELVLEVHESELDWIQIKLPEIMSQVGA 905

Query: 657 WAKGLPLKAE 666
               +PL AE
Sbjct: 906 EVLNVPLLAE 915


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 99/579 (17%), Positives = 188/579 (32%), Gaps = 106/579 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57
            ID+ET S  P              I   + ++  +               ++  +   L
Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L D     V  N  F+  +    +   +        +++A     P+  K     L 
Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPYFDTMIAAYLLEPNEKKFNLDDLA 427

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 KM   + L+  F          D          +    Y   D + T  L+K L
Sbjct: 428 LKFLGYKMTSYQELM-SFSFPLFGFSFADV-------PVEKAANYSCEDADITYRLYKTL 479

Query: 178 -IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            + L +          E  L  +   +   G  +D + + KL E   ++ ++L E+I ++
Sbjct: 480 SLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRI 539

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      +   LF   GI     +  T         + +LA +  +  L     
Sbjct: 540 AGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYR 598

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            I KL     + L + V+   GR+  +    G + TGR S      QNLP          
Sbjct: 599 KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP---------- 647

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R  I+       +V AD + IE R+LA ++G++  ++
Sbjct: 648 --------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLR 693

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHCG 456
           AF  G D++  T ++ FN   ++V++E R  GK++  ++ Y     G             
Sbjct: 694 AFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAE 753

Query: 457 LDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVK 495
             +  +         +                      D  Q  +     Q +    A+ 
Sbjct: 754 KMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAIN 813

Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
             + GTA +++K A           + + + ++Q+  +L
Sbjct: 814 TPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852



 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    +++ VHDE+V E P+    ++  L  
Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVK 869


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 109/601 (18%), Positives = 192/601 (31%), Gaps = 106/601 (17%)

Query: 7   DIETRS--PQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S  P+    VGV    E+        A+A+   PV+     +     + L     
Sbjct: 361 DTETTSLHPEDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQ---LAKDDVF-AKLAPVFA 416

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  +  + HN  F+ ++     G+      +  T ++A       S     LA  +  + 
Sbjct: 417 DPKIKKIGHNVKFDLLVL-YFAGLSAVKGVYADTMLMAHLLDSVQSCALDNLAEKYLSYK 475

Query: 123 T-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
           T K  +     ++    + D+ P D               Y   D E    LF  L+P  
Sbjct: 476 TIKYSDVAGSGSK--SVTFDNVPVDIA-----------CAYSGEDSEVALRLFNVLLPKI 522

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                    L + E     +   +   G  +  D + +  E++  E + + +DI      
Sbjct: 523 KDEGKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQAVQKDIYAAAGQ 582

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286
               +     L   LF    I      +    G  +   +   +T++A    +  L    
Sbjct: 583 EFNIA-SPKQLGNVLFESLAIPYPKKVKVDKNGNKQYSTAEDVLTEIAPMYDIANLVLRF 641

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            ++ KL       L   +S   GR+  +    G + TGR S      QN+P +       
Sbjct: 642 RSVSKLIGTYTEKLPLLISKRTGRIHTSFNQAGTT-TGRLSSSDPNLQNIPART------ 694

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  G  LV AD + IE R++A IA +   IK
Sbjct: 695 ------------------HEGKLIRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIK 736

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCG 456
           AF  G DI+  T A+     I++V+ E+R+  K     L Y  GA               
Sbjct: 737 AFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMGAHGLSAQTGLSFKAAK 796

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVK 495
             +  +         + D  +  +H     +                          A+ 
Sbjct: 797 AYIDCYFTRYPKIRDYMDSIKKFAHEHGYVETILGRRIDFPGINSTNRIAVTGAERAAIN 856

Query: 496 DKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
             + G+A +++K A  A             + +LQ+  +L         +  +   + + 
Sbjct: 857 APMQGSAADIIKIAMIAIEKWITSLPADTVRMILQVHDELVFEVKNEFLDEATAKIKELM 916

Query: 545 N 545
            
Sbjct: 917 E 917


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 100/573 (17%), Positives = 182/573 (31%), Gaps = 111/573 (19%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S  PL    VGV    E        C +  +                  L+++
Sbjct: 316 AVDTETDSLDPLKARLVGVSLCTEDGEAWYLPCGHRDEAGE-----LVAGQLPLDRLIEF 370

Query: 61  LR----DETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSS---LKN 111
           LR          + HN  F+  +       GI +       T + A           L +
Sbjct: 371 LRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPL-HDTMIGAWLLAPDRRTYKLDD 429

Query: 112 ACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            C  +N      E +T  ++ +     FC+  +                +    Y   DV
Sbjct: 430 LCGEINLRMTSYEEVTHADKSEDA---FCRVPL----------------EAAKNYSCEDV 470

Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                L++  +P          L + E  L  +   +   G R+D D + +L     +  
Sbjct: 471 YGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRRL 530

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           +  +  I +       +      L   LF    +     ++           +  L+ D 
Sbjct: 531 RTDELSIYQAAGMSF-NINSPKQLGEVLFEKLQLPKGRKTK--TGWSTDVKVLENLSFDH 587

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L  L      + KL     + L+   +   GR+  +    G + TGR S      QN+P
Sbjct: 588 ELPALILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQCG-TATGRLSSSSPNLQNIP 646

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +RS  IA++G  L+ AD + I+ RVLA 
Sbjct: 647 IRT------------------------EEGRRIRSAFIAADGCLLLAADYSQIDLRVLAH 682

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
            + +   I AF  G+DI+  T A+ FN   + V+ E R + K +   + Y       +  
Sbjct: 683 YSQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMSSFGLSSQ 742

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486
                    L + ++  +      F      ++                      +   +
Sbjct: 743 LHVSRKDAQLFIDRYFAHFSGIKDFMASTIQQAKKDGFVTTLLGRRRPLAEINSANRVQR 802

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           +     A+   + GTA +++K A    H+ +L+
Sbjct: 803 EFAERTAINTPIQGTAADIIKLAMLRIHRELLR 835


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/575 (17%), Positives = 193/575 (33%), Gaps = 107/575 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQYLR 62
           D ET S  P        Y  QA +   ++A+            +     A+  +    L 
Sbjct: 367 DTETTSLDP--------Y--QAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFRPLLE 416

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             T   V  N  ++ ++  +T GI++       T V               +A ++  + 
Sbjct: 417 STTQCKVGQNLKYDNLIL-RTYGIEVAPP-IFDTMVAHYLVAPDKPHNMNAIAESYLNYA 474

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS- 181
               E      +  + S+                +L  EY   D + T +L KRL+ L+ 
Sbjct: 475 PIPIEALIGSRKSTQKSMRMVDV-----------ELVKEYACEDADITLQL-KRLLELNI 522

Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E  L  +   +  +G +ID  ++ ++   +  E   L+++I +L    
Sbjct: 523 KQENLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIHRLAGHA 582

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSG 286
             +      L   LF    I   +    + +       +  L KD      IL+      
Sbjct: 583 F-NISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILDYRELQK 641

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L + +S  DG++  +      + TGR S      QN+P +            
Sbjct: 642 LKSTYVDALIDLISPFDGKVHTSYNQTVVT-TGRLSSTNPNLQNIPIRTEK--------- 691

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S     L+ AD + IE R++A  + ++  I+AF  
Sbjct: 692 ---------------GRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEAFKA 736

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G+DI+  T +K F  P+++V +  R   K     + Y     G A+      S     +Q
Sbjct: 737 GKDIHTATASKLFKVPLEQVDESMRRQAKTANFGIIYGISGFGLAQRLGISRSEAIATIQ 796

Query: 461 QFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLI 499
            + Q   +   + D    ++                         ++      A+   + 
Sbjct: 797 AYFQEFHAIKAYMDRVIGQAREQGYVTTLMGRKRYLRDINSRNSTLRGFDERNAINTPIQ 856

Query: 500 GTACELVKKAW----------RAKHQGVLQLWKDL 524
           GTA E++K A           + + + +LQ+  +L
Sbjct: 857 GTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDEL 891


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 189/590 (32%), Gaps = 112/590 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMPSDL 57
           L ID ET   +P+        AE     L   ++ D       V +    E++  + ++L
Sbjct: 383 LSIDTETTGTEPME-------AE-----LVGMSFSDAENKGYYVPVPPNREEALKIINEL 430

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +   G+ +     +  ++LA     P      +    
Sbjct: 431 RPLYENEKSLKVGQNIKYDMIVLQNY-GVQVRGA--LFDTMLAHYVLQPELRHNMDYLAE 487

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E      +  K   D P  D               Y   D + T +L  
Sbjct: 488 IYLHYQTIHIDELIGAKGKNQKNMRDLPAEDV------------YRYACEDADITLKLKN 535

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              + E  L  +   I   G R+D + + +  E      ++++++I 
Sbjct: 536 VLEKELKEQGAEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIY 595

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L      +      +   LF    I        T + + S   +  L     +      
Sbjct: 596 ELAGETF-NIGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILE 654

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++S  GR+  +      + TGR S      QN+P +      
Sbjct: 655 YRGLKKLLSTYIDALPQLINSRTGRIHTSFN-QAVTSTGRLSSSNPNLQNIPIR------ 707

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I  +G +   AD + IE R++A ++ +   I
Sbjct: 708 ------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMI 749

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +G DI+  T AK +   I++V+ + R   K     + Y     G A+         
Sbjct: 750 DAFLSGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFGIIYGISVFGLAERLNVSRQEA 809

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 810 KELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 869

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
              + G+A +++K A    +Q           +LQ+  +L        +E
Sbjct: 870 NAPIQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHDELNFSVPASEKE 919


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/554 (17%), Positives = 182/554 (32%), Gaps = 90/554 (16%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E  A+      +   E+++ +AHN  ++  +     GI++    +  T +         
Sbjct: 403 AEAQAIVERFRPFFEKESILKIAHNLKYDYKVLLNY-GIEVTGNLF-DTMIAHYLLNPDG 460

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L+  +  +     E   LI +  KG       D              +Y   D 
Sbjct: 461 RHGMDYLSEMYLNYKPIALE--TLIGKKGKGQKTLREIDLPTQT---------QYAAEDA 509

Query: 168 EATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T +L++   P              E  L  +   +   G  +D + +      + Q+ 
Sbjct: 510 DITFQLYEIFSPQLKKEEVEEVFYKIEMPLVKVLAKMELTGVALDEEWLKDESISLEQDL 569

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K L+  I +       +      L   LF    +D       T +   S   + +L+   
Sbjct: 570 KILEGQIFEQAGEEF-NINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKH 628

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            + +L      + KL     + L   +S  DGR+  +     A+ TGR +      QN+P
Sbjct: 629 EIIKLILEYRQLQKLKSTYVDALPNQISPIDGRVHTSFAQTVAA-TGRLASNNPNLQNIP 687

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              VR   +A  G K+V AD + IE R++A 
Sbjct: 688 IRTER------------------------GQQVRGAFVAPKGSKIVSADYSQIELRLIAE 723

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF--- 448
           I+GE+  IKAF  G+DI+ +T +K F+ P+++VSK QR+  K +   + Y   A      
Sbjct: 724 ISGEETMIKAFKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIYGQSAFALADQ 783

Query: 449 -KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486
                +     +  + +       F   +   +                      +  ++
Sbjct: 784 TGLSRTDAKQLIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHLKDINSNNFVVR 843

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGG 536
                 AV   + G+A +++K A       +          LQ+  +L         E  
Sbjct: 844 GHAERNAVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEVA 903

Query: 537 SISARRVANVPRLV 550
           +   ++        
Sbjct: 904 TTLIKQEMETAYST 917


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 176/528 (33%), Gaps = 89/528 (16%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           ++  +   L + L D     V  N  F+  +    +   +        +++A     P+ 
Sbjct: 362 DEKEVLKKLKEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPHFDTMIAAYLIEPNE 418

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            K     L       KM   + L+  F          D          +    Y   D +
Sbjct: 419 KKFNLDDLALKFLGYKMTSYQELM-SFSSPLFGFSFADV-------PVEKAANYSCEDAD 470

Query: 169 ATRELFKRL-IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T  L+K L + L +          E  L  +   +   G  +D + + KL E   ++ +
Sbjct: 471 ITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLE 530

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L E+I ++      +      +   LF   GI     +  T         + +LA +  
Sbjct: 531 ELAEEIYRIAGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHE 589

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +  L      I KL     + L + V+   GR+  +    G + TGR S      QNLP 
Sbjct: 590 IIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP- 647

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391
                                          +R  I+       +V AD + IE R+LA 
Sbjct: 648 -----------------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAH 684

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-V 447
           ++G++  +KAF  G D++  T ++ FN   ++V++E R  GK++  ++ Y     G    
Sbjct: 685 LSGDENLLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVR 744

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQ 486
                      +  +         +                      D  Q  +     Q
Sbjct: 745 LGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRNTQ 804

Query: 487 DQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
            +    A+   + GTA +++K A           + K + ++Q+  +L
Sbjct: 805 AEGERIAINTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDEL 852



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    +++ VHDE+V E PD    ++  L  
Sbjct: 816 IQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEEKDALVELVK 869


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/584 (15%), Positives = 181/584 (30%), Gaps = 100/584 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59
           L +D ET    P+           A +   +++  +               + +  +   
Sbjct: 394 LALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFES 443

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
             +++  + V  N  ++ ++ +   GI+I  + +  T V               LA  + 
Sbjct: 444 VFKNDKSLKVGQNIKYDMLVLQNY-GIEIRGRLF-DTMVAHYVLQPELRHNMDYLAEIYL 501

Query: 120 EHLTKMEE------GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATR 171
            + T   E      GK           D   Y C  A+     +  L  E  K D E   
Sbjct: 502 HYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE--- 558

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
               +L    + E  L  +   I   G R+D + + +  E      + ++++I  L    
Sbjct: 559 ----KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEE 612

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              +     +   LF    I        T + + S   +  L     +         + K
Sbjct: 613 FNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKK 671

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + ++   GR+  +      + TGR S      QN+P +            
Sbjct: 672 LLSTYIDALPQLINPRTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR------------ 718

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   I  +G     AD + IE R++A ++ +   I AF +G
Sbjct: 719 ------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSG 766

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T AK +   I +V+ + R   K     + Y     G A+            +  
Sbjct: 767 YDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDG 826

Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + D                          S +  ++      A+   + G
Sbjct: 827 YFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQG 886

Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           +A +++K A    ++           +LQ+  +L        +E
Sbjct: 887 SAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKE 930


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 169/493 (34%), Gaps = 73/493 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LK 110
             L   L    V+ +  N  F  +L  +  G+ + +   +     A   G  +     L 
Sbjct: 484 EALRPLLESPGVLKIGFNIKFTAVLLAQH-GLTLQNHDDVQLMSYALDAGRHAHGLDALA 542

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVE 168
              L      +   +  GKA +  F + +ID             ++ W++         E
Sbjct: 543 ENWLGHKALSYGEVIGSGKAKLG-FDQVAIDRATCYAAEDADVALRLWRILKPRLT--AE 599

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +++ +I ++ 
Sbjct: 600 RMMTVYETL------ERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIA 653

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGS 287
              + +      L   LF   G+     ++ T     S S + +LA++     R      
Sbjct: 654 GEEL-NIGSPKQLGDVLFGKMGLPGGKKTK-TGAWSTSASILDELAEEGHQFPRKILDWR 711

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            + KL     + L   V        T     A+ TGR S      QN+P +         
Sbjct: 712 QVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------ 765

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA+ G KLV AD + IE R+L+ +A       AF
Sbjct: 766 ------------------GRKIRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAF 807

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +G DI+  T ++ F  P+  +  E R   K +   + Y     G A          G  
Sbjct: 808 QDGIDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAY 867

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++++ +       + D                     +   ++ +  ++      A+  +
Sbjct: 868 IKKYFERFPGIRDYMDATKEFCRAHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINAR 927

Query: 498 LIGTACELVKKAW 510
           L GTA +++++A 
Sbjct: 928 LQGTAADIIRRAM 940


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/559 (18%), Positives = 194/559 (34%), Gaps = 88/559 (15%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID ET S  P    L  + +     +A     A+A+   P +L      + +   L  +
Sbjct: 349 AIDTETDSLDPMRARLIGISLSVTPGEAAYLPLAHAYPGAPEQLP----MAEVLERLRPW 404

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +     +  N+ ++R +F    G+ I       T + +             L    S 
Sbjct: 405 LENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSLV---SR 459

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HL + +       + C     +  +D        A  +   Y   D + T ++ +RL P 
Sbjct: 460 HLGRDDTLSYE--QVCGKGAKAITFD------QVALDVATRYSGEDADLTLQVHQRLWPQ 511

Query: 181 SDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                        E  +  + Q I   G  +D DL+      +  + + L+    +L  G
Sbjct: 512 IQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQAFELAGG 571

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +   LF    + +   +     S      + +LA+D  L R+     ++ 
Sbjct: 572 AF-NLGSPKQIGEILFDRLQLPVQKKTASGAPST-DEEVLEKLAEDYPLPRVILDHRSLS 629

Query: 291 KLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL +     L + ++ D GR+         + TGR +      QN+P +           
Sbjct: 630 KLKSTYTEKLPQMINPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 678

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +A  G  +  +D + IE R++A ++ +   + AFA 
Sbjct: 679 --------------AEGRRIREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAA 724

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           GEDI+  T A+ F     +VS +QR + KV+   L Y       A+      S   L + 
Sbjct: 725 GEDIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYID 784

Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPE---------FAVKDKLIG 500
           ++       + + +            E      LW+ D +            A+   + G
Sbjct: 785 RYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHASGPRRAAAERAAINAPMQG 844

Query: 501 TACELVKKAWRAKHQGVLQ 519
           TA +L+K A  A    +++
Sbjct: 845 TAADLIKMAMIAVDAALVR 863


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 112/580 (19%), Positives = 208/580 (35%), Gaps = 111/580 (19%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D+ET S  P+    VG+    E   A     A+ +   P +     +   +   L   
Sbjct: 322 ALDLETTSLNPVQAHVVGISLSCEAGVACYIPLAHRYFGVPEQ----LDLDLVLKKLKPL 377

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLAL 116
           L D  +  V  N  ++ I+ K + G+++    +  T + +               A   L
Sbjct: 378 LEDPKLKKVGQNIKYDLIVLK-SEGVNLVGVAF-DTMLASYILNPSGRRHNMNDMARDYL 435

Query: 117 NFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
            ++    K   G A     F K  I                +L  EY   D + T  L++
Sbjct: 436 GYTTTKYKEVVGTASKEIGFDKVDI----------------ELATEYAAEDADITWRLYE 479

Query: 176 RLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            L PL          + E  L  +   +   G ++D   + KL +LI Q+ +   ++I  
Sbjct: 480 NLSPLLQGDDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLEDQQKEIYS 539

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L + LF    + ++  ++         S + QLA +  L  +  + 
Sbjct: 540 LAGEEF-NINSPKQLSVILFEKLELPVIKKTKNG--YSTDVSVLEQLAAEHELPDVVLTY 596

Query: 287 SAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEI 339
             ++KL     + L E + ++ GR+  +     A+ TGR S      QN+P R E   E 
Sbjct: 597 RQLVKLKSTYADALQEDIFNNTGRVHTSFNQTVAA-TGRLSSSNPNLQNIPIRTEMGRE- 654

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A     L+ AD + +E RVLA ++ ++  +
Sbjct: 655 ------------------------IRKAFVAEGNNHLLSADYSQVELRVLAHLSEDEALV 690

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF  GEDI+  T  + F T  +++  E R + K +   + Y     G +K  K      
Sbjct: 691 DAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIVYGLSAFGLSKQLKIYPKDA 750

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              + Q+    K    +     A++                      +  +++     A+
Sbjct: 751 KKFIDQYFALYKKVKVYMVETVAQAKEVGYTLTLMNRRRYLPDLKSQNRQVRESAERIAI 810

Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
              + G+A +L+K A           + K + +LQ+  +L
Sbjct: 811 NSPVQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDEL 850



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-----GTLCSL 650
           VQ  + D++   M          K    ++L VHDE+V E P+     +       +  +
Sbjct: 814 VQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDELVFECPEDEEQEMRALVTKEMEEV 873

Query: 651 M 651
           M
Sbjct: 874 M 874


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/564 (19%), Positives = 187/564 (33%), Gaps = 94/564 (16%)

Query: 4   LFIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSA 52
           L ID ET    P+           K G      +A      + +   P ++ W       
Sbjct: 317 LAIDTETTGTDPMRADLVGVSFCLKEG------KAFYLPVGHHYLGVPAQVSWPDAR--- 367

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKN 111
               L   L D+ V+ V  N  ++  + K+  G+ +    +  T + +            
Sbjct: 368 --DVLKDVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGISF-DTMIASYVINPGLRQHNL 423

Query: 112 ACLALNFSEHLT---KMEEGKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRD 166
             LA  +  H     K   GK   AR F + S++    Y C  A+     +       RD
Sbjct: 424 DALAQRYLNHKMISYKDVVGKGKNARGFEEVSLEKACEYSCEDADMTFRLRRILAKQIRD 483

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    LF  L      E  L  +   +   G +ID  L   +    A+E K++++ I  
Sbjct: 484 -EKNEALFNEL------EMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQVEKKIQA 536

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF +  +     +  T +       + +LA+   + R     
Sbjct: 537 DAGMEF-NLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRIAREILRF 595

Query: 287 SAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            ++ KL     + L   V+ +  R+  +     A+ TGR S      QN+P +       
Sbjct: 596 RSLAKLKSTYLDALVRMVNPETKRVHTSFNQTVAA-TGRLSSSDPNLQNIPIR------- 647

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                            G A   +R   +A +GK LV AD + IE RV A  + +   + 
Sbjct: 648 -----------------GDAGKNIRKGFMAGSGKILVAADYSQIELRVFAHYSQDAAFMA 690

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCG 456
           AF   +DI+  T  +       +V+ E R I K +   + Y  G +              
Sbjct: 691 AFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGMGPQKLSEELSISKEAAQ 750

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495
             +  +    K    F++     +                         ++ +    AV 
Sbjct: 751 DYINAYYDRYKGVKRFKEKAIETALEKGYVTTLFNRRRYLPDISHNNNRIRSEAERMAVN 810

Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519
             + GTA +L+KKA    H  + +
Sbjct: 811 TPIQGTAADLIKKAMIEIHNRLTE 834


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/538 (18%), Positives = 176/538 (32%), Gaps = 104/538 (19%)

Query: 46  DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           D  EQ  +   L +    L       V  +  ++  +     GI++       T + +  
Sbjct: 381 DMPEQLPIDEVLARLKPWLESADRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYV 438

Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158
                +     LAL        K E+  GK      F + +++                 
Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492

Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
                      T +L + L P             D E  + L+ + +   G  ID  L+ 
Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                IA    +L+    +L  G   +      +    F    + +V  +     S    
Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             + +LA+D  L +L      + KL     + L   V+   GR+         + TGR +
Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   IAS G ++V AD 
Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A I+G+   ++AFA GEDI+  T A+ F     +V+ +QR I KV+   L Y
Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755

Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAE----------SHHLWM- 485
                  A           L + ++       +   ED   A              LW+ 
Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTRTAAKDKGYVETVFGRRLWLP 815

Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
                    +      A+   + GTA +L+K +           R   + ++Q+  +L
Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 189/568 (33%), Gaps = 102/568 (17%)

Query: 3   KLFIDIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
              ID ET         L    +   A +A     A+ ++  P +L     +  + + + 
Sbjct: 348 HFAIDTETTNLDYRVAELVGFSIAFDANEAYYVPLAHDYEGAPEQL----SREQVLAQIK 403

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116
             L +E V  + H+  ++  +F       I  + W   ++LA    N   +      +A 
Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH---GIIIQGWYFDTMLASYVLNAAATRHGMDDVAR 460

Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +  HLT   E   GK    + F +  ++   +                Y   D   T  
Sbjct: 461 VYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAH----------------YAAEDAHVTYR 504

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L++ L             L + E  +  +   + + G ++D   + +L    +   + L+
Sbjct: 505 LYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTMQTLE 564

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L       +     +   LF   GI     +  T +   S S + ++   L    
Sbjct: 565 NQATELAGETFNIA-SPKQVGEVLFDKLGIKGGKKT-ATGQYSTSESILEKIEHPLAEVI 622

Query: 282 LASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           L   G A LK NT ++ +      +  R+  +      + TGR S      QN+P +   
Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDATHRVHTSY-HQALTATGRLSSTDPNLQNIPIRT-- 678

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G+ L+ AD + IE R++A  + +D
Sbjct: 679 ----------------------PIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDD 716

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             + AF  G+D++  T A+     I+ V+ +QR   K +   L Y        +      
Sbjct: 717 ALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTR 776

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPE 491
                 + ++ Q       + +  +  +                         ++     
Sbjct: 777 EESRSYIARYFQRYPGVLDYMERTRQIAREQGFVETILGRRLYTPDILATNKMIKQAAER 836

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            A+   L G+A +++K A  A  + + +
Sbjct: 837 AAINAPLQGSAADIIKLAMIAVDKILPK 864


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/653 (18%), Positives = 208/653 (31%), Gaps = 144/653 (22%)

Query: 36  AWDDEPVKL--WDRT--EQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGI 86
           AW +EP +L        E   +P   +L  LR     +       N+ F+R++ +     
Sbjct: 390 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 446

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            I     +  ++LA     P SL ++  AL               +    +   D  P  
Sbjct: 447 GIELAGVVFDTMLASYLLNP-SLGHSLDAL-----------ADRWLKLQTRSYSDLVPKG 494

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQTIN 195
            T A    A     +YC  DV   + L   L             L   E  L  +   + 
Sbjct: 495 KTIAQVAIA--AVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEME 552

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
           DRG RID   + +L E +  E  +L+     L      +      L   LF   G+++  
Sbjct: 553 DRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRF-NLGSPKQLSELLFEKLGLNVKK 611

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQ 310
             +         + + +L  D  +  L      + KL     + L   V++DGR+     
Sbjct: 612 SRKTKTGYSTDAAVLEKLQGDHPIIDLILEHRTLAKLKSTYVDALPSLVAADGRIHTDFN 671

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P +                           S  +R   + 
Sbjct: 672 -QAVTATGRLSSSNPNLQNIPIRT------------------------EFSRQIRKAFLP 706

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  L  AD + IE R+LA ++ E   ++A+  G+D++  T +  F+   ++++ E+R 
Sbjct: 707 REGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFD--REEITSEERR 764

Query: 431 IGKVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           IGK++   + Y  GA+ F     +        + +F        T+              
Sbjct: 765 IGKIINFGVIYGMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTY-------------- 810

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      L     + + + +     G  + +                         
Sbjct: 811 -----------LQSLERQAIARGYVETVLGRRRYFD------------------------ 835

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                          L   R      +  D    +   +QL+R            +Q  S
Sbjct: 836 ----------FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------IQGSS 879

Query: 607 RDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
            DI+   M         Y   ++L VHDE+V E P   + S+   +   M + 
Sbjct: 880 ADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA 932


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/555 (16%), Positives = 183/555 (32%), Gaps = 101/555 (18%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET         L  + +   A +       ++  +      D         +L +Y
Sbjct: 345 ALDTETTGLDALSADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTD---------ELKRY 395

Query: 61  L----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L     D  +  +AHN+ ++  +     G  +        ++LA      SSL    LA 
Sbjct: 396 LGPVLADVGIGKIAHNAKYDLHILA---GAGLLVAGLDFDTMLAAHLLGESSLSLKGLA- 451

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            F+    +M    ALI     G         T        +   +Y   D + T  L++ 
Sbjct: 452 -FNRLGIEMTPITALI-----GEGRHQKCIST-----CGLRETADYACADADMTLRLYQL 500

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L+P            + E  L  +   +   G  +D+ ++  +   + ++  +++  I +
Sbjct: 501 LLPELEKENQSRLFDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAIYE 560

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +     +     L   LF    + +   +          + +  L  +  + RL    
Sbjct: 561 QANRPFNIA-SPRQLGEVLFEELKLPVGRKTRSG--YRTDAAVLEGLKDEHEIVRLILEY 617

Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL +     L   VS+ DGRL  +      + TGR S      QN+P         
Sbjct: 618 RTLAKLKSTYVDILPAMVSARDGRLHTSFN-QARTATGRLSSSDPNLQNIP--------- 667

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                            G     +R   +A  G  L+ AD + I+ R LA ++G+   I 
Sbjct: 668 ---------------VRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIA 712

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456
           AF   EDI+  T    +  P D+++ E R   K +   + Y        +  +       
Sbjct: 713 AFNAEEDIHTATAMSLYGLPRDEITPEMRRFAKTVNFGVIYGMSGYGLEQATEMSREEST 772

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             +Q + +       + +  + ++                      +  +++     A+ 
Sbjct: 773 RFIQTYFERYPGVRAYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVREAAERMAIN 832

Query: 496 DKLIGTACELVKKAW 510
             + GT+ +++K A 
Sbjct: 833 MPVQGTSADIIKVAM 847



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
           E     + R            +  +++    +R   Y + + G   Y+    +   + R 
Sbjct: 765 EMSREESTRFIQTYFERYPGVRAYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVRE 824

Query: 593 YGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645
              ++  N+ VQ  S DI+   M    +          ++L VHDE++ E P      + 
Sbjct: 825 AAERMAINMPVQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDELIFEVPQAELMFMS 884

Query: 646 TLCS-LMTKNPS 656
            L S  M+    
Sbjct: 885 ELASRRMSAAVE 896


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/536 (15%), Positives = 179/536 (33%), Gaps = 76/536 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L     + ++  +  +  F+R +  +                    +       +     
Sbjct: 376 LKNLFENASIRKIGQHLKFDRHILARYGISLNGVIDDTMLMSYCYNSTATRHNMDDLADF 435

Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSPP-YDCTRAN-HVQAWQLFGEYCKRDVEATR 171
             ++   + E+     A   RF +  +++   Y C  A+  +Q +Q F +    +    +
Sbjct: 436 YLNKQTIRFEDIAGSGAKQRRFDEIDLETAMQYACEDADITLQLYQFFQQKLASE-PTLQ 494

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L++      + ER L  +   +  +G +I  D +    + +A + K L +   +L  G+
Sbjct: 495 ALYE------NVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQAYQLAGGV 548

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLAS 284
             +      L+  LF    + ++  +  T ++  +   + +LA+       ++ILN  A 
Sbjct: 549 F-NLDSPKQLQEILFERLALPVIHKTP-TGQASTNEEVLQKLAELRQSALPEIILNYRAL 606

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                   + L E +  D +   T      + TGR S      QN+P +           
Sbjct: 607 GKLKSTYTDKLPELIDPDSKRVHTSYHQAVTSTGRLSSSDPNLQNIPIRS---------- 656

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G  ++ AD + IE R++A ++ ++   +AF  
Sbjct: 657 --------------DEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQRAFQL 702

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
            +DI+  T A+ F+   + V + QR   K +   L Y       A+      +     + 
Sbjct: 703 QQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAFGLARQLNISRTQAAEYID 762

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++         + D                          + ++  +      A+   + 
Sbjct: 763 KYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRLYIPDIHNKNMQRRRAAERLAINAPMQ 822

Query: 500 GTACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGG-SISARRVANVPRL 549
           G+A +++K A          Q   +L   + +     V      I   R+ ++   
Sbjct: 823 GSAADIIKLAMVQFWQTYGAQKECRLLMQVHDELVFEVATAALDIWQPRITHIMEH 878


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/589 (15%), Positives = 189/589 (32%), Gaps = 106/589 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET S   L          +A +   +++   +         +      ++   
Sbjct: 349 RIVSLDTETTSLNAL----------EAELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398

Query: 62  ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
                +E +  V  N  ++  + +      I  K  +  +++A     P        +A 
Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLRNY---GITMKGPLFDTMIAHYLLQPELRHNMDDMAE 455

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  +  K      LI    K  ++               +   +Y   D + T +L   
Sbjct: 456 TYLRY--KTIHIDQLIGAKGKDQLNMRSLAP---------EQIVDYACEDADITLQLKNI 504

Query: 177 ---------LIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                    L PL  + E  L  +   +   G ++D+  + ++ +   ++    ++ I +
Sbjct: 505 FEPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQKIYE 564

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      +   LF    +        T + + S   + +L     +       
Sbjct: 565 LAGETF-NISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEILKY 623

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + V+   G +  +      + TGR S      QN+P         
Sbjct: 624 RGLKKLLSTYVDALPKLVNPKTGNIHTSFN-QATTATGRLSSSDPNLQNIP--------- 673

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                            G     +R C I + G     AD + IE R++A ++G++  I+
Sbjct: 674 ---------------VRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIE 718

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T AK +  PID+V++++R   K     + Y     G A+      +   
Sbjct: 719 AFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITVFGLAERLNIERNEAK 778

Query: 457 LDLQQFSQNVKSTSTFEDWE---------------------QAESHHLWMQDQYPEFAVK 495
             ++ +         + +                          S +  ++      A+ 
Sbjct: 779 QLIEGYFSTFPQVQAYMEQCKETAKQNGYVETFMHRRRYLADINSQNATVRGYAERNAIN 838

Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
             + G+A +++K A             K + +LQ+  +L        +E
Sbjct: 839 APIQGSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNFSVLPNEKE 887


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/591 (15%), Positives = 184/591 (31%), Gaps = 110/591 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQS---AMPSDL 57
             L +D ET S            A +A +   +++    +   +     +     + +  
Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114
                +E ++ V  N  ++  +  +  GI++     +  +++A     P    ++     
Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY-GIELKGN--LFDTMIAHYLLQPELRHNMDYMAE 454

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                     +EE   LI    KG  +                   EY   D + T +L 
Sbjct: 455 V-YLRYQTVHIEE---LIGPRGKGQKNMRDLAPNDI---------YEYACEDADITLQLK 501

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G RID   + ++ E   +    L+  I
Sbjct: 502 NILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      +   LF    I        T + + S   + + A    +  L  
Sbjct: 562 HQLAGESF-NVSSPKQVGDILFEKLQIAEKPKKTKTGQFVTSEEELQKYATGNEIVTLIL 620

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 DYRGLKKLLGTYVDALPKLINPQTGHIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G     +R C I  +G     AD + IE RV+A ++G+   
Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF  G DI+  T AK +   +  V++++R   K     + Y     G A+        
Sbjct: 716 IEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGE 775

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +        ++ +                          S +  ++      A
Sbjct: 776 AKQLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNA 835

Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534
           +   + G+A +++K A             + + +LQ+  +L        +E
Sbjct: 836 INAPIQGSAADIIKVAMIRIYERFKRENIQSKMILQVHDELNFSVLPSEKE 886


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 201/611 (32%), Gaps = 104/611 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSA-MPSDLLQYLR 62
           D ET    PL           A +   A++WD      +   D  E++  +  +L  +  
Sbjct: 389 DTETTGLNPLT----------AELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRPFFE 438

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
           +E +  V  N  ++  +  K    DI  +  +  ++LA              LA  +  +
Sbjct: 439 NEDIQKVGQNLKYDIKVLHKY---DIEVRGPLFDTMLAHYLINPDMRHNMDVLAETYLNY 495

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
                E   LI +  KG       D    +  +       Y   D + T +L +      
Sbjct: 496 SPVSIE--TLIGK--KGKNQKSMRDVPLEDQTE-------YAVEDADITLQLKEHFEKEL 544

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   +   G  +D   +  L E +  +   L+  I K     
Sbjct: 545 GDANTQKLFDDIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAGEE 604

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +        T +   +   ++ LA D  + +       + K
Sbjct: 605 F-NIGSPKQLGEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTIIQNVLDYRGLAK 663

Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           L     + L E V  DGR+         + TGR S      QN+P +             
Sbjct: 664 LKSTYVDALPEQVEEDGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER---------- 712

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            VR   +       L+ AD + IE R++A ++ ED  I+AF NG
Sbjct: 713 --------------GRQVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNG 758

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           EDI+ +T AK FN PI++V++EQR+  K +   + Y     G +       S     +  
Sbjct: 759 EDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLTRSESKDLIDT 818

Query: 462 FSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       +                        +   S +  ++      AV   + G
Sbjct: 819 YYKTYPKLRNYMSNLVDDAREDGYVSTVLGRRRYLKDINSSNGVVRGAAERNAVNAPIQG 878

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           +A +++K A    H+ + +             +    +    V +VP+  +   K  V  
Sbjct: 879 SAADIIKVAMINIHKKLAE--------GNFKTKMLLQVHDELVFDVPKNELEDIKTLVKT 930

Query: 561 VLPSSRRLVYS 571
            + S+  L   
Sbjct: 931 EMESAYTLSVP 941



 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M N  K          ++L VHDE+V + P      + TL  
Sbjct: 876 IQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFDVPKNELEDIKTLVK 929


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 101/538 (18%), Positives = 175/538 (32%), Gaps = 104/538 (19%)

Query: 46  DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           D  EQ  +   L +    L       V  +  ++  +     GI +       T + +  
Sbjct: 381 DLPEQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYV 438

Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158
                +     LAL        K E+  GK      F + +++                 
Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492

Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
                      T +L + L P             D E  + L+ + +   G  ID  L+ 
Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                IA    +L+    +L  G   +      +    F    + +V  +     S    
Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             + +LA+D  L +L      + KL     + L   V+   GR+         + TGR +
Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   IAS G ++V AD 
Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A I+G+   ++AFA GEDI+  T A+ F     +V+ +QR I KV+   L Y
Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755

Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAE----------SHHLWM- 485
                  A           L + ++       +   ED   A              LW+ 
Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTRTAAKDKGYVETVFGRRLWLP 815

Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
                    +      A+   + GTA +L+K +  A            + ++Q+  +L
Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDEL 873


>gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 240

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 117/285 (41%), Gaps = 57/285 (20%)

Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F NGED+Y  T +  F  P++K  V+ E R  GK+  LA GY G     K M        
Sbjct: 1   FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------- 53

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A+K  L     + +  AWRA +  ++Q
Sbjct: 54  ---------------------------------ALKMGLSKDELQPIVDAWRAANPNIVQ 80

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
           LW D+       +  G  ++ R       L   +    + I LPS RRL Y       + 
Sbjct: 81  LWHDVDNAATRAISTGSPVTLR------NLGFEKKSGMLFINLPSGRRLAYVKPGIGMNR 134

Query: 580 LNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
               +          +  +  TYGGKL ENIVQA +RD+L E +      G  IV+ +HD
Sbjct: 135 FGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIHD 194

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V + P     +V  +C+L+ + P    GLP+ A GYE   Y+K
Sbjct: 195 EVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 111/627 (17%), Positives = 205/627 (32%), Gaps = 122/627 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLR 62
           D ET S            A+ A +   A+A             D+ E  A+  +  +   
Sbjct: 368 DTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFKEVFE 417

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
           DE++  +A N  ++ ++ K      I  K     ++LA     P        LA ++  +
Sbjct: 418 DESIGKIAQNLKYDWVVLKNY---GIEPKGKFFDTMLAHYLLQPDMRHNMDVLAKSYLNY 474

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK------ 175
                E  +LI +  KG       D       +       Y   D + T +L +      
Sbjct: 475 EP--VEITSLIGK--KGKKQGSMRDVELDKITE-------YAGEDADITLQLKEIFDAQI 523

Query: 176 ------RLIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                    P            L + E  L  +  T+   G R+D + + KL + +A+E 
Sbjct: 524 KAQDLRHPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKELAKEV 583

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L+E I K+       +     L   LF    +D       + +       + +LA   
Sbjct: 584 VVLEEKIYKIAGEQFNIA-SPKQLGEILFGKLQLDPKAKKTKSGQYATGEEILVKLADKN 642

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            + +       + KL     + L E V+    L  T      + TGR S      QN+P 
Sbjct: 643 EIVQHILDFRGLQKLKNTYVDALPELVNKKTGLIHTSYNQAVAATGRLSSTNPNLQNIPI 702

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAW 391
           +                              VR   I  + +  L+ AD + IE R++A 
Sbjct: 703 RT------------------------AQGREVRRAFIPRSDEFVLLAADYSQIELRIMAE 738

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV---- 447
            + +   IKAF NGEDI+ TT +K +  P+D+V  + R   K     + Y   A      
Sbjct: 739 FSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANFGIIYGISAHGLSER 798

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------- 488
                   G  ++ + +   +   + D    ++      +                    
Sbjct: 799 LNIPRKEAGEIIKAYFEEFPAVKQYMDDMINKAREQEYVETILGRRRYLRNINSRNAVER 858

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGG 536
                 A+   + G+A +++K A    H+           +LQ+  +L        ++  
Sbjct: 859 GNAERNAINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHDEL---VFDAHKDEL 915

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLP 563
            I    + ++ +  +    R + + + 
Sbjct: 916 GILKPAIVDLMKNALSSINRTMQVPME 942


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/589 (16%), Positives = 191/589 (32%), Gaps = 106/589 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57
            +D+ET S                 I   + ++  +               +++ + S L
Sbjct: 321 ALDLET-SSLDPFNC---------EIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKL 370

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L D +   V  N  ++  +    +   I        +++A     P+  K     L+
Sbjct: 371 KEILEDPSSKIVGQNLKYDYKVL---MVKGISPVYPHFDTMIAAYLLEPNEKKFNLEDLS 427

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 KM   + L+  F          D               Y   D + T  L+K L
Sbjct: 428 LKFLGYKMTSYQELM-SFSSPLFGFSFADV-------PVDKAANYSCEDADITYRLYKIL 479

Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                           E  L  +   +   G  +D + + KL E   ++ ++L E I ++
Sbjct: 480 SMKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQI 539

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      +   LF   GI     +  T +       + ++A +  +  L     
Sbjct: 540 AGEPF-NINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILEYR 598

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            I KL     +TL + V+   GR+  +    G + TGR S      QNLP          
Sbjct: 599 KIQKLKSTYIDTLPKLVNPKTGRIHASFHQTG-TATGRLSSSDPNLQNLP---------- 647

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R  I+       +V AD + IE R+LA ++G++  +K
Sbjct: 648 --------------TKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVK 693

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHCG 456
           AF  G D++  T ++ +N   ++V++E R +GK++  ++ Y     G             
Sbjct: 694 AFEEGIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTPYGLSVRLGIPVKEAE 753

Query: 457 LDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVK 495
             +  +        ++                      D  Q  +     Q +    A+ 
Sbjct: 754 KMIISYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKNTQSEGERIAIN 813

Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534
             + GTA +++K A             K + ++Q+  +L        +E
Sbjct: 814 TPIQGTAADIIKLAMIDIDEELRKRNMKSRMIIQVHDELVFEVPDEEKE 862


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/538 (18%), Positives = 175/538 (32%), Gaps = 104/538 (19%)

Query: 46  DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           D  EQ  +   L +    L       V  +  ++  +     GI +       T + +  
Sbjct: 381 DLPEQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYV 438

Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158
                +     LAL        K E+  GK      F + +++                 
Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492

Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
                      T +L + L P             D E  + L+ + +   G  ID  L+ 
Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                IA    +L+    +L  G   +      +    F    + +V  +     S    
Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             + +LA+D  L +L      + KL     + L   V+   GR+         + TGR +
Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   IAS G ++V AD 
Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A I+G+   ++AFA GEDI+  T A+ F     +V+ +QR I KV+   L Y
Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755

Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWM- 485
                  A           L + ++       + + +            E      LW+ 
Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTRTTAKEKGYVETVFGRRLWLP 815

Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
                    +      A+   + GTA +L+K +  A            + ++Q+  +L
Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDEL 873


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 119/682 (17%), Positives = 220/682 (32%), Gaps = 127/682 (18%)

Query: 7   DIETR--SPQPLPKVGVW----AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           D ET   SP+    VG+        +Q       ++         D T        L   
Sbjct: 395 DTETTALSPRDAQLVGIGCCWGPAPDQIAYLPLGHSQGGN----LDLT---LALEQLRPL 447

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D        N+ ++R++ K   G+ +    +  T + +       S     L+  + +
Sbjct: 448 LEDARYPKAFQNTKYDRLVLK-FQGVHLQGVVF-DTMLASYVLNPEGSHNLTDLSRKYLD 505

Query: 121 -----HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                +   +E+G+ L       S+++    C     +  +  F    K   +      K
Sbjct: 506 ITAQSYTDLVEKGQNLADL----SVEAIANYC----GLDVYATFQLVPKLRADLLDANPK 557

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L  L   E+ L  +   +   G RID D + +L + + Q+   L+E    L      + 
Sbjct: 558 LLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAYGLAGETF-NL 616

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                L   LF    +D+    +  L      + + ++  D  +  L      + KL   
Sbjct: 617 GSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLILEHRTLAKLKST 676

Query: 293 --NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   V SD GR+         + TGR S      QN+P +                
Sbjct: 677 YVDALPNLVRSDTGRVHTDFN-QAITATGRLSSSNPNLQNIPIRT--------------- 720

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                      S  +R   I   G  LV AD + IE R+LA ++ E   ++A+   +D++
Sbjct: 721 ---------EFSRQIRKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLVEAYQQHQDVH 771

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T         + ++ E+R + K++   + Y  GA+ F   A   G+  +Q    +   
Sbjct: 772 KLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGAQRF---ARESGVSFKQAKGFID-- 824

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
             +E +     +   M+ Q       + L+G                             
Sbjct: 825 RFYERYPLVFRYLKQMEGQAIALGYVETLLGR---------------------------- 856

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                             R       R++   L        +++      ++      +R
Sbjct: 857 ------------------RRYFSFDSRELQ-QLRGKDPDSLAELDLSQLKVSQYDRGQLR 897

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645
                       +Q  S DI+   M    +        ++L VHDE+V E P + +  + 
Sbjct: 898 AAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQVHDELVFEMPPSEWEPLR 951

Query: 646 TLCS-LMTKNPSWAKGLPLKAE 666
           +L    M +       +PL AE
Sbjct: 952 SLIQATMAEAVP--LSIPLLAE 971


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/503 (17%), Positives = 174/503 (34%), Gaps = 74/503 (14%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLART--NGLPS 107
             + + L   L +  +  +  +  ++  +  K  + +++  K W   ++LA    N   +
Sbjct: 482 DTVLAKLKPILENPNIGKIGQHLKYDAHVLSKYGIELNMSPKNWEMDTMLASYVLNAAAT 541

Query: 108 SLKNACLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHV-QAWQLFGE 161
                 LA ++    T   +   GK      F K +I+ +  Y C  A+   Q ++LF +
Sbjct: 542 RHSMDDLARHYLHTQTISFEDVAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQD 601

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             K D    R L +  IP++        +   +   G  I    + +L E   +E   L+
Sbjct: 602 KLKDDAVNQRLLHELEIPVAQ-------ILCQMESEGIMIKRSFLNELSERFDEEIVALE 654

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +    +  G   +      L   LF   G+     ++   +     + ++++  +  L  
Sbjct: 655 KQAY-IEAGEAFNLGSPKQLGEMLFDKLGVIGGKKTKSG-QYSTGEAVLSKI--EHPLAE 710

Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +A    ++ KL     + L     +D     T      + TGR S      QN+P + ++
Sbjct: 711 IALEYRSLAKLKNTYTDALDAVADNDTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTKT 770

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G+ L+ AD + IE R++A  +G+D
Sbjct: 771 ------------------------GRLIRQAFIAPKGRVLLAADYSQIELRLMAHFSGDD 806

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----A 452
              +AF  G DI+  T A+     +D V+  +R   K +   L Y   A           
Sbjct: 807 NLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRNAKAINFGLLYGMSAFGLAKQIQMGR 866

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
           S     + Q+         +                           +  +  ++     
Sbjct: 867 SEAQDYINQYFARYPGVQRYMQETRNSAVDNGYIETILGRKLYTPDIQHSNQMVRRGAER 926

Query: 492 FAVKDKLIGTACELVKKAWRAKH 514
            A+   L G+A +L+K A  A  
Sbjct: 927 AAINAPLQGSAADLIKLAMIAVD 949


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 86/596 (14%), Positives = 183/596 (30%), Gaps = 112/596 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-----MPSD--- 56
            +D ET S   +           A +   +++             +       +P D   
Sbjct: 354 ALDTETTSLDEMA----------ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEVL 403

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +L D        +  +++ +     GI +       T + +    +        L
Sbjct: 404 ARLRPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGY-VHDTMLQSYVLEVHRPHNLESL 461

Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           A            G++ +     C       P+           +    Y   D E    
Sbjct: 462 AERHL--------GRSAMRYEDLCGKGAAQIPFARVPI------ERAAPYACEDAEQCLA 507

Query: 173 LFKRLIPLSDG---ERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           + + L P        + ++ L+         +   G  ID   + +  + + +  + L+ 
Sbjct: 508 VHQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALGERIRALEA 567

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +   L      +      +    +    + ++  +  T         + +LA+D  L   
Sbjct: 568 EAHALAGMPF-NLGSPKQIAEVFYDRLKLPVLKKT-ATGAPSTDEEVLEKLAEDYPLPAR 625

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                +++KL     + L   ++   GR+         + TGR +      QN+P +   
Sbjct: 626 VLEHRSLVKLKSTYTDKLPTMINPATGRVHTHFA-QAVAVTGRLASAEPNLQNIPIRT-- 682

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IA  G  +  AD + IE R++A ++ + 
Sbjct: 683 ----------------------PEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQDP 720

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             ++AF  G D++  T A+ F    + V+ EQR   K +   L Y       AK     A
Sbjct: 721 ALLRAFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKTINFGLIYGMSPYGLAKALGIDA 780

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------YPEF------------- 492
           S     ++++ +       + +  +A++      +         PE              
Sbjct: 781 SAAKSYIERYFERFAGVRAYMEQTRAQARARGYVETVFGRRLVLPEIQSPNGPRRAAAER 840

Query: 493 -AVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            A+   + GTA +L+K +  A      + Q   ++   + +     V        R
Sbjct: 841 AAINAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDWVR 896



 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + D++   M    +          +VL VHDE+V E P+     V   +  LM   
Sbjct: 848 QGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDWVRTEVPRLMAAV 906


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/584 (15%), Positives = 181/584 (30%), Gaps = 100/584 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59
           L +D ET    P+           A +   +++  +               + +  +   
Sbjct: 371 LALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFES 420

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
             +++  + V  N  ++ ++ +   GI+I  + +  T V               LA  + 
Sbjct: 421 VFKNDKSLKVGQNIKYDMLVLQNY-GIEIRGRLF-DTMVAHYVLQPELRHNMDYLAEIYL 478

Query: 120 EHLTKMEE------GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATR 171
            + T   E      GK           D   Y C  A+     +  L  E  K D E   
Sbjct: 479 HYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE--- 535

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
               +L    + E  L  +   I   G R+D + + +  E      + ++++I  L    
Sbjct: 536 ----KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEE 589

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              +     +   LF    I        T + + S   +  L     +         + K
Sbjct: 590 FNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKK 648

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + ++   GR+  +      + TGR S      QN+P +            
Sbjct: 649 LLSTYIDALPQLINPRTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR------------ 695

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   I  +G     AD + IE R++A ++ +   I AF +G
Sbjct: 696 ------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSG 743

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T AK +   I +V+ + R   K     + Y     G A+            +  
Sbjct: 744 YDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDG 803

Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + D                          S +  ++      A+   + G
Sbjct: 804 YFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQG 863

Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           +A +++K A    ++           +LQ+  +L        +E
Sbjct: 864 SAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKE 907


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/589 (15%), Positives = 195/589 (33%), Gaps = 110/589 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60
           + +D ET S   +          +A +   ++A +++    V + ++ +++    +  + 
Sbjct: 357 ISLDTETTSTNAI----------EAQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRFKA 406

Query: 61  L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116
           +  +   + V  N  ++  + +      I  +  +  +++A     P    ++       
Sbjct: 407 IYENPKTLKVGQNIKYDLEVLRNY---GIALQGPLFDTMVAHYLLQPELRHNMDFMAEVY 463

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              E +       ALI    K   +      +             Y   D + T +L   
Sbjct: 464 LNYETVHID----ALIGPKGKAQKNMRELAPSEV---------YNYACEDADITLQLKNV 510

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P           ++ E  L  +   +   G RID   + +  ++  +   +L+++I +
Sbjct: 511 LQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ 570

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      +   LF    I        T + + S   +  L     +       
Sbjct: 571 AAGKTF-NVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDY 629

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            A+ KL     + L + ++   G +  +      + TGR S      QN+P         
Sbjct: 630 RALKKLLGTYVDALPKLINPRTGHIHTSFN-QAVTATGRLSSSDPNLQNIP--------- 679

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                            G     +R C I   G +   AD + IE RV+A ++ +   + 
Sbjct: 680 ---------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T AK +N P+ +V++++R   K     + Y     G A       +   
Sbjct: 725 AFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAK 784

Query: 457 LDL----------QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVK 495
             +          QQ+ +  K T+    +               S +  ++      A+ 
Sbjct: 785 QLIDGYFKMFPQVQQYMEQAKETARANGYVETFFHRRRYLPDINSGNATVRAIAERNAIN 844

Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534
             + G+A +++K A             + + +LQ+  +L        +E
Sbjct: 845 APIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKE 893


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/516 (18%), Positives = 179/516 (34%), Gaps = 81/516 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--CTSVLARTNGLPS--SLK 110
             L   L    +  +  N  F  +L  +  G+ + +   +   + VL    G     +L 
Sbjct: 504 DALRPLLDSAGLAKIGFNIKFTAVLLAQH-GVTLRNIDDVQLISYVLDAGRGSHGLDALS 562

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
            + L             GKA IA        +  Y   R++  ++ W++         E 
Sbjct: 563 ESNLGHTLHVLGALTGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLV--AER 620

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +++ +I +L  
Sbjct: 621 MMAVYETL------ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAG 674

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288
             I +      L   LF   G+     ++ T     S   + +LA+      R       
Sbjct: 675 EDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHEFPRKILDWRQ 732

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KL     + L   V    +   T     A+ TGR S      QN+P +          
Sbjct: 733 VSKLRSTYTDALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------- 785

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A+ G +LV AD + IE R+L+ +A      KAF 
Sbjct: 786 -----------------GRKIRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQ 828

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +G DI+  T ++ F  P++ +  + R   K +   + Y     G A          G  +
Sbjct: 829 DGIDIHAMTASEMFGVPVEGMPSDIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYI 888

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++ +       + D                     +   ++ +  ++      A+  +L
Sbjct: 889 KRYFERFPGIRAYMDETRDFCRTHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINARL 948

Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDL 524
            G+A +++++A           +   Q +LQ+  +L
Sbjct: 949 QGSAADIIRRAMVRMEDALAEKKLAAQMLLQVHDEL 984


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/530 (15%), Positives = 162/530 (30%), Gaps = 91/530 (17%)

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L++     +  N  F+ ++ +K  GI I    +  T +                    +
Sbjct: 419 ALQNPKSFKIGQNIKFDILVVRKY-GIRIAGPLF-DTMIAHYLLNPELRHGMD----YLA 472

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E   K +  +       KG       D       +       Y   D + T +L     P
Sbjct: 473 ETYLKYKTVRIEELIGPKGRKQLCMRDVPIPQVAE-------YAAEDADITLKLKNYFAP 525

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       D E  L  +   +   G  +D   + +  E +    KKL+++I +L  
Sbjct: 526 CLDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYELAG 585

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            I  +      +   LF    I+       T     S   + ++     +         +
Sbjct: 586 -IKFNINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRSKHPVVEKLLEYRGL 644

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L E ++   G++  +      + TGR S      QN+P            
Sbjct: 645 KKLLSTYIDALPELINPETGKIHTSYN-QAVTSTGRLSSTNPNLQNIP------------ 691

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R    A         AD + IE R++A ++ +   I+AF
Sbjct: 692 ------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAF 739

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +G DI+  T AK +  P+++V+ + R   K     + Y     G A+      +     
Sbjct: 740 RSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLNIPRAESKEL 799

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++ + +       + D                          SH+  ++      A+   
Sbjct: 800 IEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHNAIVRGYAERNAINAP 859

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGS 537
           + G+A +++K A             K + +LQ+  +L         E   
Sbjct: 860 IQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDEMEKVK 909


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 103/565 (18%), Positives = 191/565 (33%), Gaps = 107/565 (18%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYL 61
            ID+ET    PL    VG+    EQ      AY      P      T    +P ++ + L
Sbjct: 316 AIDLETTGTDPLKAHIVGLSFSWEQKE----AYYVPLMAPENTRHLTADIVLP-EIRKVL 370

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
            DE+   +  N  ++ ++ KK    +I  K     S++A     P+  +     +A  + 
Sbjct: 371 EDESKKKIGQNIKYDLLVLKKH---NIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYL 427

Query: 120 EHLTKM-----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + T M       GK  I      ++D  P D              +Y  +D + T  L 
Sbjct: 428 SYKTIMIAELIGSGKQQI------TMDKVPVD-----------KVCQYACQDADITFRLA 470

Query: 175 KRLIPLSDGERDLWLLDQTIND-----------RGYRIDLDLVLKLQELIAQERKKLDED 223
           + + PL   E  LW L Q I              G  I+ D + ++   +A + + L+++
Sbjct: 471 ETMAPLLKKE-GLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLEKE 529

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I ++ +    +      L   LF    +  +  ++  +      + +  LA    L +LA
Sbjct: 530 IYRVAEQEF-NISSHKQLGAILFDKFQLPKLRRTKTGV--STDANVLASLAWRHPLPKLA 586

Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   ++ D G++  T      + TGR S      QN+P      
Sbjct: 587 LEYRQLAKLKSTYADALPNLLNQDTGKIHTTFN-QTVTSTGRLSSSNPNLQNIP------ 639

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   I        + AD + IE R+LA  + + 
Sbjct: 640 ------------------VKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDT 681

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             ++AF    DI+    +  ++ P++ V+ E R   K +   + Y     G ++      
Sbjct: 682 ALMEAFREDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEYGLSRDTGLSL 741

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPE 491
           +     +  +    +    F D    E+  +                             
Sbjct: 742 NDAKDFIDAYFTLYQGVREFRDKVVEEAKEMGYVKTLFNRKRAIPDINAKNKRFRNLAER 801

Query: 492 FAVKDKLIGTACELVKKAWRAKHQG 516
            A+   + G+A +L+K A    +  
Sbjct: 802 IAINTIIQGSAADLIKVAMNNIYSK 826


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 99/538 (18%), Positives = 175/538 (32%), Gaps = 104/538 (19%)

Query: 46  DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           D  EQ  +   L +    L       V  +  ++  +     GI +       T + +  
Sbjct: 381 DMPEQLPIDDVLARLKPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYV 438

Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158
                +     LAL        K E+  GK      F + +++                 
Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492

Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
                      T +L + L P             D E  + L+ + +   G  ID  L+ 
Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                IA    +L+    +L  G   +      +    F    + +V  +     S    
Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             + +LA+D  L +L      + KL     + L   V+   GR+         + TGR +
Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   IAS G ++V AD 
Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A I+G+   ++AFA GEDI+  T A+ F     +V+ +QR I KV+   L Y
Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755

Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWM- 485
                  A           L + ++       + + +            E      LW+ 
Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAHYMEDTRTTAKDKGYVETVFGRRLWLP 815

Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
                    +      A+   + GTA +L+K +  A            + ++Q+  +L
Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDEL 873


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 119/653 (18%), Positives = 208/653 (31%), Gaps = 144/653 (22%)

Query: 36  AWDDEPVKL--WDRT--EQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGI 86
           AW +EP +L        E   +P   +L  LR     +       N+ F+R++ +     
Sbjct: 401 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 457

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            I     +  ++LA     P SL ++  AL               +    +   D  P  
Sbjct: 458 GIELAGVVFDTMLASYLLNP-SLGHSLDAL-----------ADRWLKLQTRSYSDLVPKG 505

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQTIN 195
            T A    A     +YC  DV   + L   L             L   E  L  +   + 
Sbjct: 506 KTIAQVAIA--AVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEME 563

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
           DRG RID   + +L E +  E  +L+     L      +      L   LF   G+++  
Sbjct: 564 DRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRF-NLGSPKQLSELLFEKLGLNVKK 622

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQ 310
             +         + + +L  D  +  L      + KL     + L   V++DGR+     
Sbjct: 623 SRKTKTGYSTDAAVLEKLQGDHPIIDLILEHCTLAKLKSTYVDALPSLVAADGRIHTDFN 682

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P +                           S  +R   + 
Sbjct: 683 -QAVTATGRLSSSNPNLQNIPIRT------------------------EFSRQIRKAFLP 717

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  L  AD + IE R+LA ++ E   ++A+  G+D++  T +  F+   ++++ E+R 
Sbjct: 718 REGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFD--REEITSEERR 775

Query: 431 IGKVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           IGK++   + Y  GA+ F     +        + +F        T+              
Sbjct: 776 IGKIINFGVIYGMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTY-------------- 821

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      L     + + + +     G  + +                         
Sbjct: 822 -----------LQSLERQAIARGYVETVLGRRRYFD------------------------ 846

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                          L   R      +  D    +   +QL+R            +Q  S
Sbjct: 847 ----------FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------IQGSS 890

Query: 607 RDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
            DI+   M         Y   ++L VHDE+V E P   + S+   +   M + 
Sbjct: 891 ADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA 943


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/591 (14%), Positives = 172/591 (29%), Gaps = 106/591 (17%)

Query: 34  AYAWDDEPVKLWDRTEQS--AMPSDLLQ-----YLRDETVMCVAHNSLFERILFKKTLGI 86
           ++A D+               +P+D+++      L    V+ V  N  F+  + ++    
Sbjct: 349 SFAVDEGRACYVPLAAPDVRPLPADVVREVLSPLLVSTEVVKVGQNLKFDYHVLRRWGVR 408

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                     +     +       +              ++     A F    +      
Sbjct: 409 PEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV------ 462

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTIND 196
                        G Y   D +    L + L    + E            L  +   + +
Sbjct: 463 ----------AEAGVYAAEDADIALRLSRVLKERLEAEGLGRVFYEMEMPLLSILARMEE 512

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +D + +      + +    ++++I +L      +   T  L+  LF+  G+  V  
Sbjct: 513 WGIGLDGEALSAFGRELEERISTIEKEIFELVGHEF-NVGSTKQLQEVLFVERGLPPVKK 571

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQ 310
           ++         S + +LA    +        ++ KL     + L   V+   GRL     
Sbjct: 572 TKTGF--STDTSVLEELAARDPVAAKVLEYRSLTKLKNTYVDVLPGLVNPGTGRLHTWFS 629

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             G + TGR S      QN+P +                              +R   + 
Sbjct: 630 QVG-TATGRLSSKDPNLQNIPIKT------------------------EEGRRIREAFVP 664

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G   + AD + IE  +LA ++ +    +AF  GED++  T +  F  P + V+ EQR 
Sbjct: 665 QRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDVHRATGSLLFGVPPEAVTPEQRR 724

Query: 431 IGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           I K +   + Y   A    +            +  +         F +   AE+      
Sbjct: 725 IAKTINFGVIYGMSAFRLSRELGIPRKEAERFIDAYFTTYAGVRAFIERTIAEAEEKGYV 784

Query: 487 DQ---------------------YPEFAVKDKLIGTACELVKKAWRA----------KHQ 515
                                      AV   + G+  +++K A               +
Sbjct: 785 TTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQGSGADIIKLAMIDLDAQMRRMGLASR 844

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            +LQ+  +L       V        +R+       + R    + + +   R
Sbjct: 845 MILQVHDEL----IFEVPPEELEVMKRLVRERMEGVVRLSVPLRVEMGVGR 891


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 187/561 (33%), Gaps = 104/561 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ + D P +L    E  A    L   L       V  N  F R +  +  GI+
Sbjct: 388 AFYLPLAHDYIDAPAQL----EYLATLDKLKPLLEKIAPQKVVFNLKFMRSVL-RLEGIN 442

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSE-----HLTKMEEGKALIARFCKGSIDS 142
           +    +    + +           A L L + +     +     +GK  +  F + SI  
Sbjct: 443 LQGVAF-DPMLESYLLDSTGKHDKASLTLKYLQIEIASYEAIAGKGKKQLP-FNQVSIKD 500

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191
                              Y    VE +  L   L P             D E  L ++ 
Sbjct: 501 I----------------TPYVGEHVELSLRLHLLLWPKLEKFPKLVALYEDIELPLAIVL 544

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  ID  ++      I +   +++++   +  G   +      L+  LF    +
Sbjct: 545 SDVELGGVEIDATMLGAQSVEIGKRLLEIEKEAY-IEAGKEFNLSSPKQLQSILFEDLEL 603

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
            ++  +     S      + +LA+   L +L      + KL     + L + +++  GR+
Sbjct: 604 PILKKTPKGAPST-GEEVLVELAETYKLPKLVIEHRGLSKLKSTYTDKLPKMINAQTGRV 662

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P +                              +R
Sbjct: 663 HTSY-HQAVTVTGRLSSSDPNLQNIPIRS------------------------EQGRRIR 697

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G K+V AD + IE R++A ++ +   ++AF+ G DI+  T ++ F+  +D+V+
Sbjct: 698 QAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVT 757

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
             QR   K +   L Y       AK  K   S   L + ++        T+    + ++ 
Sbjct: 758 TNQRRSAKAINFGLIYGMSAFGLAKQLKISRSDAKLYMDKYFHRYPGVLTYMQTTRDKAR 817

Query: 482 HLWMQDQY---------------------PEFAVKDKLIGTACELVKKAW-------RAK 513
                +                          A+   + GTA +++KKA          +
Sbjct: 818 EQGFVETILGRRLQLPHINSRNGILKKASERAAINAPMQGTAADIIKKAMLDVAAWVEKQ 877

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
               +QL   + +     ++E
Sbjct: 878 APSQVQLLMQVHDELVFCIKE 898


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 93/575 (16%), Positives = 193/575 (33%), Gaps = 107/575 (18%)

Query: 7   DIETRS--PQPLPKVGV---WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           D ET S        VG+   +   E   I          PV   DR +   +        
Sbjct: 395 DTETTSLDTTDAELVGLSFSYLAGEAFYI----------PVP-ADRQQAEEIVGYFRAVF 443

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +E +  +  N  ++ ++ K   GI++  K    T +               LA ++  +
Sbjct: 444 ENENIEKIGQNIKYDMLVLKNY-GIEVHGKL-SDTMLAHYLLEPDKRHGMDILAASYLNY 501

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRL 177
                   +LI +  KG       D              +Y   D + T +L     + L
Sbjct: 502 EP--VSITSLIGK--KGGKQGNMRDVAIPEIT-------QYAGEDADITFQLHSIFSREL 550

Query: 178 IPLS------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
             ++      + E  L  +  ++ + G R+D++ + ++  ++  + ++ + +I +     
Sbjct: 551 PKVNAAKLFNEVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAAGQS 610

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +        T +       ++ L  + ++ R       + K
Sbjct: 611 F-NISSPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYRELQK 669

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   VSS  GR+  +      + TGR S      QN+P +            
Sbjct: 670 LKSTYVDALPTMVSSRTGRIHTSYN-QAVAATGRLSSTNPNLQNIPIRT----------- 717

Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +  +   +++ AD + IE R++A  +G+    +AF  
Sbjct: 718 -------------PRGREIRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEAFNQ 764

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G DI+ TT +K F  P+++V+ + R   K++   + Y     G A+            ++
Sbjct: 765 GRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISAFGLAQRLGIPRGEASEIIR 824

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            + +   +   + D                          S +   +      A+   + 
Sbjct: 825 AYFEEFPAVKGYMDKVVNDAREREYVETILGRRRYLPDINSRNQTNRGYAERNAINAPIQ 884

Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDL 524
           G+A +++K A    H          + +LQ+  +L
Sbjct: 885 GSAADMIKVAMINIHDFMAKEKLKSRMILQVHDEL 919


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 92/591 (15%), Positives = 186/591 (31%), Gaps = 108/591 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57
             L +D ET S   +           A +   ++A  +     V +    E++  + +  
Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC--LA 115
                +  ++ V  N  ++  + +   GI++  K W   +++A     P    N      
Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLRNY-GIELKGKMW--DTMIAHYLIQPELHHNMDYMAE 455

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +  +     +EE      +  K     PP                EY   D + T  L  
Sbjct: 456 IYLNYQTIHIEELIGPKGKNQKSMRSLPPSQV------------YEYAAEDADITLRLKN 503

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           +L P            + E  L  +   +   G  +D   + +  +       +++  I 
Sbjct: 504 KLEPELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEARIY 563

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L       +     +   LF    I        T + + S   + QL     +      
Sbjct: 564 ELAGEQFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADILE 622

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   G +  +      + TGR S      QN+P +      
Sbjct: 623 HRGLKKLIGTYIDALPKLINPKTGHIHTSFN-QTITATGRLSSSDPNLQNIPIR------ 675

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                             G     +R   I   G     AD + IE RV+A ++ +   I
Sbjct: 676 ------------------GEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMI 717

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           K F+ G+D++  T A  +  PI++V++++R   K     + Y     G A+         
Sbjct: 718 KVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITVFGLAERLDIPRDEA 777

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
            + +  +         + +                          SH+  ++      A+
Sbjct: 778 KMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLFGRRRYLPDINSHNATVRGFAERNAI 837

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
              + GTA +++K A             + + +LQ+  +L        +E 
Sbjct: 838 NAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYPDEKEK 888


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 112/590 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMPSDL 57
           L ID ET   +P+        AE     L   ++ D       V +    E++  + ++L
Sbjct: 382 LSIDTETTGTEPME-------AE-----LVGMSFSDAENQAYYVPVPPIREEALKIVNEL 429

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +     +I  K  +  ++LA     P      +    
Sbjct: 430 RPLYENEKSLKVGQNIKYDMIVLQNY---EIQVKGPLFDTMLAHYVLQPELRHNMDYLAE 486

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +        ++E   LI    K   +                    Y   D + T +L  
Sbjct: 487 IYLHYQTIHIDE---LIGPRGKNQKNMRDLSPEEV---------YRYACEDADVTLKLKN 534

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              + E  L  +   I   G R+D + + +  E      ++++++I 
Sbjct: 535 ILEKELKEQGGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIY 594

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L D     +     +   LF    I        T + + S   +  L     +      
Sbjct: 595 ALADETFNIA-SPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILE 653

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     ++L + ++   G +  +      + TGR S      QN+P +      
Sbjct: 654 YRGLKKLLSTYIDSLPQLINPRTGHIHTSFN-QAVTATGRLSSSNPNLQNIPIR------ 706

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I  +G +   AD + IE R++A ++ +   I
Sbjct: 707 ------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMI 748

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +G DI+  T AK + T I  V+ + R   K     + Y     G A+         
Sbjct: 749 DAFRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISVFGLAERMNVSRQEA 808

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + +       + D                          S +  ++      A+
Sbjct: 809 KELIDGYFETYPQVKEYMDRSIRIARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 868

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
              + G+A +++K A    H+           +LQ+  +L        +E
Sbjct: 869 NAPIQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELNFSVPASEKE 918


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 99/564 (17%), Positives = 182/564 (32%), Gaps = 92/564 (16%)

Query: 4   LFIDIETRSPQP-LPK-VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           L +D ET S  P L K VG+    E  +A      +    +  K  D +   A+   +  
Sbjct: 315 LSVDTETTSKHPMLAKLVGISFAVEPHRAYYIPVGHT-GMDAKKQPDLSRVIAL---IRP 370

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116
            L +  V  V  N  ++ I+  +  GI +    +  T + +          SL    + L
Sbjct: 371 LLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLGF-DTMIASHLLNPSQRGHSLDKIAMDL 428

Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-----HVQAWQLFGEYCKRDV 167
                  + +E    GK  I         +  Y    A+     H    Q   E    D+
Sbjct: 429 -LDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDADITLLCHGILKQKLQESNLLDL 487

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                       ++  E  L  +   +   G ++D   + +L +   QE   L+  I  L
Sbjct: 488 ------------MNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTLETQIYAL 535

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +   +  L   LF    +     ++           + +LA+   L        
Sbjct: 536 AGETF-NINSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELPEKILRYR 594

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL     + L E +    GR+  +      + TGR S      QN+P +        
Sbjct: 595 SLGKLKSTYSDALQELIHPETGRIHTSFN-QAITATGRLSSSDPNLQNIPIRT------- 646

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +   G  LV AD + IE R+LA  A ++  I++
Sbjct: 647 -----------------NEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQS 689

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F N EDI+  T A+ F    + ++++ R   K +   + Y       AK           
Sbjct: 690 FRNDEDIHTRTAAEVFQAFPEFITEDLRRQAKAINFGIMYGMSAFKLAKEINVTRKTAQT 749

Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496
            +  +         F D    ++                      ++ ++      A+  
Sbjct: 750 YIDSYFARYAGVKRFIDKTIEQAKTTGEVTTILGRKRRLNDINASNVNLRKLAERAAINT 809

Query: 497 KLIGTACELVKKAWRAKHQGVLQL 520
            + G+A +L+K A     + + + 
Sbjct: 810 PVQGSAADLIKLAMINMDRELKKT 833


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/592 (16%), Positives = 187/592 (31%), Gaps = 97/592 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S  PL    V         +A     A+ +   P +         + + L  +
Sbjct: 344 ALDTETTSLDPLAARIVGISLAVAPGEAAYLPLAHDYPGVPAQ---LPCDEVL-ARLKSW 399

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L       +  +  +++ +     GI +   R   T + +       S K+     +   
Sbjct: 400 LESPGHAKIGQHLKYDQHVLANH-GIALAGVR-HDTLLQSYVLE---SGKDGVRGHDLG- 453

Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            L     G A I     C    +   ++         +        +       L   L 
Sbjct: 454 QLATRHLGLATIPYEALCGKGANQIGFEQVAIGQAAEYAAEDADLCQ------RLHAVLY 507

Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P            ++ E  +  +   +  +G  ID +L+ +    I +    L+      
Sbjct: 508 PQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLTRQSHEIGKRLLDLEARAHAA 567

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L   LF   G+ +   +     S      +++LA D  L ++     
Sbjct: 568 AGQPF-NVNSPKQLAEILFDKLGLPVKKKTPSGTPST-DEEVLSELALDYPLPKILLESR 625

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + V++  GR+  +      + TGR +      QN+P +        
Sbjct: 626 QLAKLKGTYTDKLPKMVNAGTGRVHTSYA-QAVAVTGRLASSDPNLQNIPVRT------- 677

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R+  IA  G  LV AD + IE R++A ++ +   ++A
Sbjct: 678 -----------------AEGRRIRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEA 720

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           FA GED++  T A+ F      V  +QR + KV+   L Y       A+           
Sbjct: 721 FAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMSAFGLARELDLERGAAQA 780

Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496
            ++++       + +    +  +             LW+          +      A+  
Sbjct: 781 YIERYFARYPGVARYMATTREAARTQGYVETVFGRRLWLPEIRSSQAGRRQGAERAAINA 840

Query: 497 KLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            + G+A +L+K A      W    +   +L   + +     V +      R 
Sbjct: 841 PMQGSAADLIKSAMIAVQGWLDAERLQTRLLMQVHDELVLEVPDDELARVRG 892



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 16/138 (11%)

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           DL  G A    E        VA          +   ++     RRL   +++   +    
Sbjct: 772 DLERGAAQAYIERYFARYPGVARYMATTREAARTQGYVETVFGRRLWLPEIRSSQAGRRQ 831

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSET 636
                 R            +Q  + D++   M       +A +    +++ VHDE+V E 
Sbjct: 832 GA---ERAAINAP------MQGSAADLIKSAMIAVQGWLDAERLQTRLLMQVHDELVLEV 882

Query: 637 PDTPYFSV-GTLCSLMTK 653
           PD     V G L  LMT 
Sbjct: 883 PDDELARVRGELPRLMTD 900


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/578 (17%), Positives = 201/578 (34%), Gaps = 86/578 (14%)

Query: 5   FIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
            +D ET S        +  V     A +A      + +   P +L    +   +   L  
Sbjct: 352 AVDTETTS-VDYRLARIVGVSFALQASEAFYIPIGHDYMGAPEQL----DAKFVLDTLKP 406

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLALN 117
            L +  +  +  +  ++  +F       I    W   ++LA     P++       LA  
Sbjct: 407 ILENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMDDLAQY 463

Query: 118 FSEHLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           + ++ T   E   GK      F +  ++   PY    A+    W+L+  + +    A  +
Sbjct: 464 YLDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADIT--WRLYEYFAQ----ALAK 517

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           + K    L + E     +   + + G R+D+  + +L +    +   L+   ++L     
Sbjct: 518 IPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELAGQPF 577

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      L   LF   GI     +      T ++IL   +   +A   IL   + S   
Sbjct: 578 -NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHPIIAT--ILEYRSLSKLK 634

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               ++L     S+ +   T      + TGR S      QN+P +               
Sbjct: 635 STYTDSLIAQSDSETQRVHTSYHQAITATGRLSSTDPNLQNIPIR--------------- 679

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G     +R   IA  G+ ++ AD + IE R++A  + ++  +KAF +G DI
Sbjct: 680 ---------GEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDI 730

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQ 464
           +  T A+     ++ V+ +QR   K +   L Y       AK  K   +     +  +  
Sbjct: 731 HQATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLKLSRAEAQEYITLYFS 790

Query: 465 NVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLIGTAC 503
              S   + +  +A +             L+M          +      A+   L G+A 
Sbjct: 791 RYPSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAA 850

Query: 504 ELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537
           +++K A  +  Q +     ++   + +     V E  +
Sbjct: 851 DIIKLAMISVDQALPKEHAKMLLQVHDELVFEVDEDKA 888



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RRL   +++   + +  A     R            +Q  + DI+   M +  +     
Sbjct: 817 GRRLYMENIRAGNAMVRQAA---ERAAINAP------LQGSAADIIKLAMISVDQALPKE 867

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
              ++L VHDE+V E  +     V   L  LM
Sbjct: 868 HAKMLLQVHDELVFEVDEDKADEVTALLKKLM 899


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/595 (15%), Positives = 187/595 (31%), Gaps = 116/595 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D ET S   +           A +   +++ +++            +P +  + L
Sbjct: 348 KTLSLDTETTSTDAI----------SAELVGLSFSVEEKEAYYV------PIPENREEAL 391

Query: 62  R----------DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
           +          +E+++ V  N  ++  +     G+ +     +  +++A     P    N
Sbjct: 392 KRVAIFKPVYENESILKVGQNIKYDYEVLSNY-GVKLKGA--MFDTMIAHYLIQPELRHN 448

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                  +E L   +          KG       D +  +         EY   D + T 
Sbjct: 449 MD---YMAETLLGYQTIHIEELLGSKGKKQKNMRDLSPTDI-------YEYAAEDADITL 498

Query: 172 ELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L   L P              E  L  +   +   G RID + + +  ++  +  ++ +
Sbjct: 499 RLKNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYE 558

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
             I K       +      +   LF    I        T + + S   +  +     + R
Sbjct: 559 VKIFKEAGEEF-NISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIVR 617

Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              +   + KL       L + ++S  G +  +      + TGR S      QN+P +  
Sbjct: 618 NILNYRGMKKLLSTYVEALPKLINSRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTD 676

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R C I   G     AD + IE R++A ++ +
Sbjct: 677 D------------------------GKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSED 712

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
           D  ++AF  G DI+  T AK ++  +D V+  QR   K     + Y     G A+  +  
Sbjct: 713 DNMMEAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQANFGIIYGITTFGLAQRMEIP 772

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            +     +Q + +       + +                          S +  ++    
Sbjct: 773 NNEARALIQDYFRTFPKVQAYMEHAKELARSKGYAETLFHRRRYLPNINSRNGTIRGFDE 832

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
             A+   + GT  +++K A             + + +LQ+  +L        +E 
Sbjct: 833 RNAINAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELNFSVYPDEREK 887


>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
 gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
          Length = 907

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/572 (18%), Positives = 184/572 (32%), Gaps = 104/572 (18%)

Query: 5   FIDIETRSPQPLP--KVGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D+E  S  PL    +G+ +A  E +A      + +   P +L      + +       
Sbjct: 333 ALDVEASSASPLQCELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAAFARI----KPL 388

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---LN 117
           L +     V  N  + R +     GI +       T + +         + A LA   L 
Sbjct: 389 LEERAAKIVGQNLKYARHVLANC-GIALGGAAD-DTLLQSYVLEAHQPHELASLANRHLG 446

Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +        GK      F + ++                +  GEY     + T  +  +
Sbjct: 447 LATLACDELTGKGAARIGFDQVAV----------------ERAGEYAAEQADVTLRVRGQ 490

Query: 177 L-----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L               + E  +  +   +   G  +D  L+      + ++  +L++   
Sbjct: 491 LAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQRAF 550

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +       +      +   LF   G+ ++  + G   S      +  LA D  + R    
Sbjct: 551 QEAGQPF-NLGSPKQIGDILFAQKGLPILKKTPGGAPST-DEETLELLALDHPIARAILD 608

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + V    GRL  +     A  TGR +      QN+P +      
Sbjct: 609 YRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAV-TGRLASVEPNLQNIPART----- 662

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  LV AD + IE R++A ++ +   +
Sbjct: 663 -------------------AEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLL 703

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AFAN  DI+  T A+ F  P+D VS EQR I KV+   L Y       A       S  
Sbjct: 704 HAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAA 763

Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494
              + ++       + +                         +  + +   +      A+
Sbjct: 764 QAWIDRYFTRYPGVANYMLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAI 823

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              + GTA +L+K A  A     +Q W D   
Sbjct: 824 NAPMQGTAADLIKLAMIA-----VQRWIDSER 850



 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           Q  + D++   M          + G  ++L VHDE++ E P+     V   L S M   
Sbjct: 828 QGTAADLIKLAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDV 886


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/526 (17%), Positives = 186/526 (35%), Gaps = 98/526 (18%)

Query: 59  QYLRD--ETVMCVAHNSLFERILFKKTL---------GIDIPSKRWICTSVLARTNGLPS 107
            YL D    V+ VA N        K  L         G  + S++    + +A     PS
Sbjct: 363 SYLADRLSDVVSVASNRNIASANIKDYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPS 422

Query: 108 -------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLF 159
                  SL    L+L +      +  GK  I +    + D+   Y C  +        +
Sbjct: 423 NESYDYESLGREFLSLTYPSKTELL--GKLSINKAVNEAEDNLIKYACLSS--------Y 472

Query: 160 GEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
             Y   D    +   + +  L +  E  L  +   +  +G  +D   ++   +++  +  
Sbjct: 473 AYYKCADKITEQLKSENMYELFETIEMPLIFVLFEMQQQGISVDKQALVDYSKVLGTKIS 532

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
            L+++I +       +      L + LF   G+     ++       +   + +LA D  
Sbjct: 533 VLEKEIYEAAGEEF-NINSPKQLGVILFERLGMPNGKKTKSG--YSTAADVLEKLAPDYP 589

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           +         + KL     + L++ +S DGR+ GT      + TGR S      QN+P +
Sbjct: 590 VVSKILEYRQLAKLKSTYADGLTQYISEDGRIHGTFN-QTITATGRISSTEPNLQNIPIR 648

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +  +G   + AD + IE R+LA ++
Sbjct: 649 ------------------------MEMGKAIRKVFVPKDGFVFLDADYSQIELRILAHMS 684

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
           G++  I+A+ +  DI+  T A+ F  P+++V+ EQR   K +   + Y       ++   
Sbjct: 685 GDEKLIEAYNSSADIHRATAAQVFGVPLEEVTDEQRRNAKAVNFGIIYGMSSFGLSQDLS 744

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    ++++  +  +  TF D                       + +S +   +  
Sbjct: 745 ISRKEAKEYIERYFASYPTIKTFIDGLVSDAKEKGYSLTMYNRRREIPEIKSSNFMQRSF 804

Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
               A+   + GTA +++K A             + + +LQ+  +L
Sbjct: 805 GERVAMNAPIQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDEL 850



 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M N             ++L VHDE++ ET +    
Sbjct: 801 QRSFGERVAMNAPIQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVD 860

Query: 643 SVGTL 647
           +V  +
Sbjct: 861 TVKQI 865


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/545 (18%), Positives = 175/545 (32%), Gaps = 95/545 (17%)

Query: 54  PSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
           P D L  L+       V  V     F  +L  +  G+ + +         A   G  S  
Sbjct: 492 PRDALDALKPILESAGVAKVGFAIKFAAVLLAQH-GLTLRNIDDPQLMSYALDAGRGSHA 550

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +A    N    L  + E         K   D  P D   A           Y     + 
Sbjct: 551 LDALSESNLGHTLHTLTELTGTGK--NKIGFDQVPVDRATA-----------YAAERADV 597

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           +  L + L P              ER L  +   +  RG  ID  ++ +L    AQ   +
Sbjct: 598 SLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAAR 657

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278
           ++ +I +L    I +      L   LF   G+     ++ T     S   + +LA+    
Sbjct: 658 IEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHE 715

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             R       + KL     + L   V        T     A+ TGR S      QN+P +
Sbjct: 716 FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A+ G KLV AD + IE R+L+ +A
Sbjct: 776 TED------------------------GRKIRRAFVATPGNKLVSADYSQIELRLLSEVA 811

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A    
Sbjct: 812 DVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLS 871

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                 G  ++++ +       + D                     +   ++ +  ++  
Sbjct: 872 IPREEAGAYIKRYFERFPGIRAYMDETRDFCRNHGYVTTLFGRKCHYPDIKASNPSIRAF 931

Query: 489 YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSI 538
               A+  +L G+A +++++A           +   Q +LQ+  +L         E    
Sbjct: 932 NERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLP 991

Query: 539 SARRV 543
             R V
Sbjct: 992 VVRAV 996


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/569 (17%), Positives = 179/569 (31%), Gaps = 101/569 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWD------------RT 48
             + ID ET S  P+        AE     L   ++ +EP V  +               
Sbjct: 365 KPISIDTETTSQDPMM-------AE-----LLGISFSEEPGVAYYIAFSHSESIYSHLLP 412

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                   L   L D     +  N  ++ ++ K      I  K     ++LA     P  
Sbjct: 413 SAEESLKILKPMLEDSNWKKIGQNIKYDLLVLKNY---GIELKGIYFDTMLASYLLNPGE 469

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            ++    +       K    + L+    K   +    D  +           EY   D +
Sbjct: 470 RRHNMDDMAVDYLNYKTITYEELVGT-GKKKQNLYDIDPDKV---------SEYACEDAD 519

Query: 169 ATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T +L   L P            + E  + L    +   G  +D      L      + K
Sbjct: 520 ITLQLHNVLSPKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIK 579

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
           + +++I         +   T  L+  LF    +     ++    T  S+L     T    
Sbjct: 580 EHEKNIHFYAGRQF-NVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPII 638

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D +L+    S       +TL   V+   +   T      + TGR S      QN+P    
Sbjct: 639 DDLLSIRKFSKLKSTYTDTLPLLVNPKTKRIHTSYNQTIAATGRLSSTNPNLQNIP---- 694

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G +++  D + IE R++A  + +
Sbjct: 695 --------------------IKDEEGRLLRKGFIAKKGYEILSLDYSQIELRIMAHFSND 734

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I A+ +G DI+  T A  F  P D+V+ + R   KV+  ++ Y     G +   +  
Sbjct: 735 PNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIYGVTSFGLSNNLRIS 794

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                  ++++    K  +T+ +                          S H  + +   
Sbjct: 795 RKEAKEFIEKYFAAYKGVATYMEEIVEFCKQNGYVETLLGRRRYLPDIHSSHKMVSEGAK 854

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             A+   + GT+ +++K A    H+ + +
Sbjct: 855 RVAINSPIQGTSADMIKIAMIQIHEKIKK 883


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 126/676 (18%), Positives = 218/676 (32%), Gaps = 145/676 (21%)

Query: 7   DIETRS--PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAMP-SDLLQYL 61
           D ET S  P+    VG+           C +      V       TE   +P  ++L  L
Sbjct: 381 DTETTSLEPKDTTLVGIG----------CCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430

Query: 62  ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
                 E    V  N+ F+RI+    L   I     +  ++LA     P       L+  
Sbjct: 431 SVILESENYPKVFQNTKFDRIVL---LNKGIKLAGVVFDTMLASYVLRPE------LSHK 481

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            S+   +  E    +               T+     + +    YC  D  AT  L  +L
Sbjct: 482 LSDLCERYLENIKALNYRDLEIPK------TQTIAHLSLEKVAHYCGMDAYATFMLVPKL 535

Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           I            L   E+ L  +   + + G  ID   + +L + + Q+ + L+    +
Sbjct: 536 IAELKQAPDLYELLLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYE 595

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF   G++     +        H+ + +L  D  +       
Sbjct: 596 AAGESF-NLGSPKQLSEILFEKLGLNKRKSRKLKTGYSTDHATLEKLQGDHPIIDYILEH 654

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L   V    GR+         + TGR S      QN+P +       
Sbjct: 655 RTLAKLKSTYVDALPALVHPQTGRVHTDFN-QAVTTTGRLSSSNPNLQNIPIRT------ 707

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   I  +   LV AD + IE R+LA ++ E   ++
Sbjct: 708 ------------------EFSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPVLLE 749

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A+ N +D++  T    F+   + ++ E+R+IGK +   + Y  GA+ F   A   GL  Q
Sbjct: 750 AYQNYQDVHRVTAQLLFDK--EVITSEERSIGKTINFGVIYGMGAQRF---ARSMGLSFQ 804

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +    +                                               HQ   ++
Sbjct: 805 EGKDFIDKY--------------------------------------------HQKYARV 820

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
           ++ L       + +G   + +          RR+       L   R     ++  D   L
Sbjct: 821 FEYLERVKKEAIAKGFVTTIKG--------RRRYFEFFDDKLNHLRGEKPENLDLDKLNL 872

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSET 636
           N + +QL+R            +Q  S DI+   M    +    Y   ++L VHDE+V E 
Sbjct: 873 NYSDAQLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELVFEI 926

Query: 637 PDTPYFSVG-TLCSLM 651
           P   +  +   +   M
Sbjct: 927 PPDEWEDLQVKIKDTM 942


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/588 (15%), Positives = 184/588 (31%), Gaps = 108/588 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59
           L +D ET    P+           A +   +++  +          +      +  +   
Sbjct: 365 LALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEP 414

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
             ++E  + V  N  ++ ++ +   GI++  K +  T V               LA  + 
Sbjct: 415 VFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGKLF-DTMVAHYVLQPELRHNMDYLAEIYL 472

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174
            + T   E   LI    KG  +               Q    Y   D + T +L      
Sbjct: 473 HYQTIHIE--ELIGPKGKGQKNMRDLSP---------QEVYLYACEDADVTLKLKNILEQ 521

Query: 175 -------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++L    + E  L  +   I   G R+D + + +  E      + ++++I  L
Sbjct: 522 ELKKNDAEKLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL 579

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +G    +     +   LF    I        T + + S   +  L     +        
Sbjct: 580 AEGEFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR 638

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + ++   GR+  +      + TGR S      QN+P +        
Sbjct: 639 GLKKLLSTYIDALPQLINPKTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR-------- 689

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I  +G     AD + IE R++A ++ +   I A
Sbjct: 690 ----------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDA 733

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +G DI+  T AK +   I +V+ + R   K     + Y     G A+           
Sbjct: 734 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKE 793

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            +  + +      ++ D                          S +  ++      A+  
Sbjct: 794 LIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 853

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
            + G+A +++K A    ++           +LQ+  +L        +E
Sbjct: 854 PIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKE 901


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 185/589 (31%), Gaps = 112/589 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62
            ID ET S   +           A +   +++ ++                + L+Y+R  
Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANR---EEALKYIRIF 397

Query: 63  -----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
                ++ ++ +  N  ++  +     G+ +  +  +  +++A     P        +A 
Sbjct: 398 KPLYENDKILKIGQNIKYDYKVLNNY-GVTLQGE--MFDTMIAHYLIQPELHHNMDYMAE 454

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               + T   E   LI    K   +      T            EY   D + T  L   
Sbjct: 455 TLLGYRTIHIE--ELIGPKGKKQKNMRDLSPTDI---------CEYAAEDADITLRLKHL 503

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P            + E  L  +   +   G  +D + + +   +     K+ +++I K
Sbjct: 504 LEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYK 563

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      +   LF    I        T + + S   +  L     + R   + 
Sbjct: 564 EAGETF-NIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNY 622

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + ++   G +  +      + TGR S      QN+P +       
Sbjct: 623 RGMKKLLSTYIDALPKLINPRTGHIHTSFN-QAQTATGRLSSSDPNLQNIPVRTDD---- 677

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R C I  +G     AD + IE R++A ++G++  ++
Sbjct: 678 --------------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMME 717

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T AK ++  IDKV+  QR   K     + Y     G A+          
Sbjct: 718 AFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGEAR 777

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             +Q +         + +                          S +  ++      A+ 
Sbjct: 778 ELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAIN 837

Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
             + GT  +++K A             + + +LQ+  +L        +E
Sbjct: 838 APIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/591 (15%), Positives = 192/591 (32%), Gaps = 112/591 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQ 59
           L +D ET S   +          QA +   +++ +           DR +   M +    
Sbjct: 375 LSLDTETTSTNTM----------QAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIFKP 424

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
              ++ ++ +  N  ++  +  +  GI+I  K  +  +++A       L  ++      L
Sbjct: 425 LYEEDKILKIGQNIKYDYEVLAQY-GINIKGK--MFDTMIAHYLIQPELHHNMDYMAETL 481

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +     ++E   LI    K   +      T            EY   D + T +L+  
Sbjct: 482 -LNYKTIHIDE---LIGAKGKEQKNMRNLSPTSI---------YEYACEDADITLQLYNV 528

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L+P            D E  L  +   +   G  +D D + +   +  +  +  +  I +
Sbjct: 529 LLPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYE 588

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                  +      +   LF    I +    ++   + + +   +  L     + R   +
Sbjct: 589 QAGEKF-NISSPKQVGDILFGKMQIMEKPKKTKKG-QYVTNEEVLQSLEASSPIVRNILN 646

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              I KL     + L + ++   GR+  +      + TGR S      QN+P +      
Sbjct: 647 YRGIKKLLGTYVDALPKLINKRTGRIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD--- 702

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R C I         AD + IE R++A ++ ++  I
Sbjct: 703 ---------------------GKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMI 741

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +G DI+  T AK ++ P++ V+  QR   K     + Y     G A+      +  
Sbjct: 742 EAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIYGITTYGLAQRMGIPNNEA 801

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++ +         F +                          S +  ++      A+
Sbjct: 802 KKLIEDYFNTFPKVHDFMESAKELARKKGYAETIFGRRRYLNDINSKNSTVRGFAERNAI 861

Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535
              + GT  +++K A             + + +LQ+  +L        +E 
Sbjct: 862 NAPIQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELNFSVFPDEKER 912



 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 8/118 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            A+++         +    +      +R+  Y++ + G   YLN   S+    R +  + 
Sbjct: 800 EAKKLIEDYFNTFPKVHDFMESAKELARKKGYAETIFGRRRYLNDINSKNSTVRGFAERN 859

Query: 598 TENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC 648
             N  +Q    DI+   M    +          ++L VHDE+           V  + 
Sbjct: 860 AINAPIQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELNFSVFPDEKERVEHIV 917


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/588 (15%), Positives = 184/588 (31%), Gaps = 108/588 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           L +D ET    P+           A +   +++  +          +      +  +   
Sbjct: 371 LALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAERKEAIKIVREFEP 420

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
             ++E  + V  N  ++ ++ +   GI++  K +  T V               LA  + 
Sbjct: 421 VFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGKLF-DTMVAHYVLQPELRHNMDYLAEIYL 478

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174
            + T   E   LI    KG  +               Q    Y   D + T +L      
Sbjct: 479 HYQTIHIE--ELIGPKGKGQKNMRDLSP---------QEVYLYACEDADVTLKLKNILEQ 527

Query: 175 -------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++L    + E  L  +   I   G R+D + + +  E      + ++++I  L
Sbjct: 528 ELKKNDAEKLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL 585

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +G    +     +   LF    I        T + + S   +  L     +        
Sbjct: 586 AEGEFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR 644

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + ++   GR+  +      + TGR S      QN+P +        
Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR-------- 695

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I  +G     AD + IE R++A ++ +   I A
Sbjct: 696 ----------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDA 739

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +G DI+  T AK +   I +V+ + R   K     + Y     G A+           
Sbjct: 740 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKE 799

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            +  + +      ++ D                          S +  ++      A+  
Sbjct: 800 LIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 859

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
            + G+A +++K A    ++           +LQ+  +L        +E
Sbjct: 860 PIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKE 907


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/609 (18%), Positives = 194/609 (31%), Gaps = 121/609 (19%)

Query: 7   DIETRSPQPL--PKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
           D ET S  P+    VG+    E   A     A+     P    D  EQ  +   L +   
Sbjct: 345 DTETTSLDPMLARLVGLSFSVESGKAAYLPVAHR---GP----DMPEQLPLDEVLARLKP 397

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALN- 117
            L       V  +  ++  +       DI        T + +       +     LAL  
Sbjct: 398 WLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDSLALRH 454

Query: 118 FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                 K E+  GK      F + ++                             T +L 
Sbjct: 455 LGVKTIKYEDVAGKGAKQIGFDEVALTQAAEYAAEDAD----------------ITLQLH 498

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L P             + E  + L+ + +   G  ID   +      IA    +L+  
Sbjct: 499 HALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIELEAQ 558

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +L  G   +      +    F    + +V  +     S      + +LA+D  L +L 
Sbjct: 559 AYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLL 616

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   V+   GR+         + TGR +      QN+P +    
Sbjct: 617 LEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT--- 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IAS G ++V AD + IE R++A I+G+  
Sbjct: 673 ---------------------AEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L Y       A        
Sbjct: 712 LLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRD 771

Query: 454 HCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWM----------QDQYPEF 492
              L + ++       + + +            E      LW+          +      
Sbjct: 772 AAKLYIDRYFARYPGVAQYMEDTRSVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERA 831

Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWK----DLTEGFACVVQEGGSI 538
           A+   + GTA +L+K +  A            + ++Q+      ++ +G   +V+E    
Sbjct: 832 AINAPMQGTAADLIKLSMIAVDDWLTRDKLASRMIMQVHDELVLEVPDGELSLVREKLPE 891

Query: 539 SARRVANVP 547
               VA + 
Sbjct: 892 MMCGVAKLK 900


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/588 (15%), Positives = 184/588 (31%), Gaps = 108/588 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59
           L +D ET    P+           A +   +++  +          +      +  +   
Sbjct: 371 LALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEP 420

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
             ++E  + V  N  ++ ++ +   GI++  K +  T V               LA  + 
Sbjct: 421 VFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGKLF-DTMVAHYVLQPELRHNMDYLAEIYL 478

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174
            + T   E   LI    KG  +               Q    Y   D + T +L      
Sbjct: 479 HYQTIHIE--ELIGPKGKGQKNMRDLSP---------QEVYLYACEDADVTLKLKNILEQ 527

Query: 175 -------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++L    + E  L  +   I   G R+D + + +  E      + ++++I  L
Sbjct: 528 ELKKNDAEKLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL 585

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +G    +     +   LF    I        T + + S   +  L     +        
Sbjct: 586 AEGEFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR 644

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L + ++   GR+  +      + TGR S      QN+P +        
Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR-------- 695

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   I  +G     AD + IE R++A ++ +   I A
Sbjct: 696 ----------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDA 739

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +G DI+  T AK +   I +V+ + R   K     + Y     G A+           
Sbjct: 740 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKE 799

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            +  + +      ++ D                          S +  ++      A+  
Sbjct: 800 LIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 859

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
            + G+A +++K A    ++           +LQ+  +L        +E
Sbjct: 860 PIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKE 907


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/566 (15%), Positives = 174/566 (30%), Gaps = 107/566 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPSDLLQY 60
           D ET S             +     +   ++  EP K +      D+ +   +       
Sbjct: 377 DTETTS------------LDTFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPL 424

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALN 117
           L D ++     N  ++  +        I     +  +++A     P    ++        
Sbjct: 425 LEDASIEKTGQNMKYDISVLGNY---GIGVGGRMFDTMIAHYLLQPELRHNMDYMAEVF- 480

Query: 118 FSEHLTKMEEGKALIARFC--KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174
                    E       F   K      P +  R   +       +Y   D + T +L  
Sbjct: 481 LGYRTIHFGE------LFDDDKTKKSGKPIEDIRKVELGK---LKDYACEDADITLQLKN 531

Query: 175 -----------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                      K L    D E  L  +   +   G  ID   +    E + +E +K++ D
Sbjct: 532 IFGQKLCESSLKNLF--FDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERD 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I+   D  I +      +   LF    I        T +       + +L     + +L 
Sbjct: 590 ILAYVDLPI-NISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLI 648

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL       L + ++    ++  +        TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLSTYVEALPKLINPKTNKIHTSFN-QTVVSTGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G  L+ AD + +E R++A ++G+  
Sbjct: 702 ------------------VRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            + AFA+G+DI+  T A+ F  PI++V+ + R   K     + Y     G ++       
Sbjct: 744 MLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISAFGLSERLDIPRK 803

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492
                +  + ++      + +    E+                      +  ++      
Sbjct: 804 EAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYLPDINSQNAGVRGFAERI 863

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL 518
           A+   + GTA +++K A     + + 
Sbjct: 864 AINAPIQGTAADIIKIAMIKVDEAIR 889


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/585 (15%), Positives = 188/585 (32%), Gaps = 104/585 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYL 61
            ID ET S   +           A +   +++ +++    V +    E++     + + L
Sbjct: 351 SIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400

Query: 62  -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
              + +M +  N  ++  +  +  G+ +  K  +  +++A     P    N       +E
Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY-GVTLQGK--MFDTMIAHYLIQPELHHNMD---YMAE 454

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            L   +          KG       D +  +         EY   D + T  L   L P 
Sbjct: 455 TLLSYQTIHIEELLGPKGKKQKNMRDLSPTDI-------YEYAAEDADITLRLKNVLEPR 507

Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      + E  L  +   +   G  +D + +    ++  +  K+ +++I K    
Sbjct: 508 LKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAGE 567

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +   LF    I        T + + S   +  L     + R   +   + 
Sbjct: 568 EF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYRGMK 626

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + ++   G +  +      + TGR S      QN+P +           
Sbjct: 627 KLLSTYIDALPKLINPRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD-------- 677

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R C I   G     AD + IE R++A ++ ++  ++AF  
Sbjct: 678 ----------------GKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G DI+  T AK ++  IDKV+  QR   K     + Y     G A+            ++
Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                          S +  ++      A+   + 
Sbjct: 782 GYFRTFPKVQAYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           GT  +++K A             + + +LQ+  +L        +E
Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/541 (17%), Positives = 172/541 (31%), Gaps = 110/541 (20%)

Query: 49  EQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               MP  L           +L       V  +  ++  +     GI++       T + 
Sbjct: 381 RGPDMPEQLPLDDVLARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLE 438

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQA 155
           +       +     LAL        K E+  GK      F + ++               
Sbjct: 439 SYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD--- 495

Query: 156 WQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLD 204
                         T +L + L P             + E  + L+ + +   G  ID  
Sbjct: 496 -------------ITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDA 542

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            +      IA     L+     L  G   +      +    F    + +V  +     S 
Sbjct: 543 RLQAQSNEIATRLVDLEAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST 601

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318
                + +LA+D  L +L      + KL     + L   V+   GR+         + TG
Sbjct: 602 -DEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTG 659

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R +      QN+P +                              +R   IA+ G ++V 
Sbjct: 660 RLASNDPNLQNIPVRT------------------------AEGRRIREAFIAAPGHRIVS 695

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   
Sbjct: 696 ADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFG 755

Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHL 483
           L Y       A           L + ++       + + +  +A +             L
Sbjct: 756 LIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRL 815

Query: 484 WM----------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKD 523
           W+          +      A+   + GTA +L+K +  A            + ++Q+  +
Sbjct: 816 WLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDE 875

Query: 524 L 524
           L
Sbjct: 876 L 876


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 166/521 (31%), Gaps = 92/521 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +      +E +  VA N  ++  +     G+++  +    T +               LA
Sbjct: 409 EFKPLFENENIRKVAQNIKYDLTILATY-GVEVKGE-IYDTMLAHYILEPDQRHGMDYLA 466

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +  +  K      LI    KG       D          +   EY   D + T +L  
Sbjct: 467 ETYLSY--KPIPISDLIG---KGKKQLNMRDV-------PLEQIKEYAAEDADITLQLKH 514

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L            L + E  L  +   +   G +ID++ +  L   + ++  K  EDI 
Sbjct: 515 VLDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIF 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L      +      L   LF    ID       T +       +     D  + R    
Sbjct: 575 QLAGMEF-NVGSPKQLGEILFEHMKIDEKPKKTPTGQYATGEDILVNYEADHEIVRKILD 633

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L   +S   GR+  T      + TGR S      QN+P +      
Sbjct: 634 FRELSKLKSTYVDALPTLISKRTGRIHTTYN-QAVAATGRLSSTNPNLQNIPIRTER--- 689

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   I       ++ AD + IE R++A  +G++  
Sbjct: 690 ---------------------GREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESM 728

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           ++AF NG DI+  T +K F   +++V+ + R   K++   + Y     G A+        
Sbjct: 729 LEAFDNGMDIHAATASKVFGVSLEEVNSDMRRKAKMVNFGIIYGISAFGLAQRLGIPRGE 788

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493
               +  +        ++ D    ++  L   +                          A
Sbjct: 789 AKNIIDAYFTQFPKVKSYMDQTIEKARELEYVETILGRRRYLRDINSRNQTNRGFAERNA 848

Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
           +   + G+A +++K A    H          + +LQ+  +L
Sbjct: 849 INAPIQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDEL 889


>gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 106/566 (18%), Positives = 182/566 (32%), Gaps = 96/566 (16%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S  P+    VG+    E   A     A+     P       +Q  +   L  +
Sbjct: 288 ALDTETTSLDPMQARLVGLSMSVEAGVACYIPVAHR---GPDHAPQLPKQEVL-DRLRPW 343

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D     + HN+ ++  +     G+ +       T + A        +    LA  +  
Sbjct: 344 LEDSKAHKLLHNAKYDTHVL-MNEGVALAGVA-EDTMLQAYVLESHKRVNMQELAERWLG 401

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            +    E        C        +D    +    +         D + T +L + L P 
Sbjct: 402 RIGTTYED------LCGKGAKQIGFDEIDVDKASHY------ACEDADFTLQLHQVLRPK 449

Query: 181 SDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
              +  L  + Q           I   G  ID  L+      + Q+  + +    +L   
Sbjct: 450 VLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSHELGQKLLEFEAKAYELAGQ 509

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF    + +V  +     S      +T+LA D  L  L      + 
Sbjct: 510 PF-NLNSPKQLGEILFQRMQLPIVRKTPSGAPST-DEDVLTKLAHDYPLPALLLEYRGLA 567

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + ++   GR+        A  TGR +      QN+P +           
Sbjct: 568 KLKSTYTDKLPKMINPRTGRVHTRYA-QAAVITGRLASSDPNLQNIPVRT---------- 616

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR+  +AS G ++V AD + IE RV+A ++ ++   +AF  
Sbjct: 617 --------------PEGRRVRAAFVASGG-QIVSADYSQIELRVMAHVSDDENLRQAFER 661

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G+DI+  T A+ F     +VS EQR   K +   L Y  G    A             + 
Sbjct: 662 GDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLIYGMGEFGLASNLGITRDAARAYID 721

Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA----------VKDKLI 499
           ++       + + +            E      LW+ D                +   + 
Sbjct: 722 RYFARYPGVAAYMEQTKRMANELGYVETVFGRRLWLPDLRGAKGPRRAAAERAAINAPMQ 781

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLT 525
           GTA +L+K A  A     +Q W +  
Sbjct: 782 GTAADLIKMAMVA-----VQDWLEAE 802


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/521 (17%), Positives = 174/521 (33%), Gaps = 84/521 (16%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-G 104
           D+ E   +      +  +E +  +  N  ++  +       ++  K  +  +++A     
Sbjct: 414 DQEEAQTLIEKFRPFFENENIEKIGQNMKYDLKILSNY---NMQVKGKLFDTMIAHYLIN 470

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                    L+  + ++  K  E   LI +  KG       D    +         EY  
Sbjct: 471 PDMRHNMDVLSETYLKYAPKSIE--TLIGK--KGKNQLSMRDVPLEDI-------KEYAT 519

Query: 165 RDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T +L +   P+ +           E  L  +   +   G R+D++ +  +   + 
Sbjct: 520 EDADITFQLKEHFQPILEKVGTKKLFDEIEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQ 579

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQL 273
           +E    ++ I +        +     L   LF    I      +  T +       ++ L
Sbjct: 580 KEIDAFEQQIYETAGEKFNLA-SPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLSYL 638

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
           A +  + R       ++KL     + L   V    GR+         + TGR S      
Sbjct: 639 ANEHQIVRDILEWRQMVKLQSTYIDALPNQVDKKTGRVHTDY-MQTVAATGRLSSTNPNL 697

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386
           QN+P +                              +R   IA      L+ AD + IE 
Sbjct: 698 QNIPIRTEK------------------------GRLIRKAFIARDENYTLLSADYSQIEL 733

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R++A + GE+  IKAF N EDI+ +T AK FN P+D+V+KEQR+  K +   + Y     
Sbjct: 734 RIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSAF 793

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------------- 488
           G +             ++ + Q      +F   +   +      +               
Sbjct: 794 GLSNQTNLSRKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGRRRYLKDINSA 853

Query: 489 -------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                      AV   + G+A +++K A    H+ +     
Sbjct: 854 NAIVRGGAERNAVNAPIQGSAADIIKIAMINIHKKLTSENW 894


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/555 (18%), Positives = 187/555 (33%), Gaps = 96/555 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLR 62
           D ET S   L          +A +   ++++            DR E          +  
Sbjct: 377 DTETTSLNEL----------EAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIFRPFFE 426

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
            E ++ VAHN  F+  + K+    DI  K  +  +++A              L+  +  +
Sbjct: 427 KEDLLKVAHNLKFDYKVLKQY---DITVKGAMFDTMIAHYLLNPDGRHGMDYLSEVYLNY 483

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             K    + +I +  KG       D               Y   D + T +L++   P  
Sbjct: 484 --KPVSIETIIGK--KGKKQGNFRDADLRTQTD-------YAAEDADVTFQLYELFAPQL 532

Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E  L  +   +   G  +D   + +    +  + K L+  I +L+   
Sbjct: 533 KKENLEELFYNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFELSGEE 592

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +D       T +   S   + +L+    + +         K
Sbjct: 593 F-NMNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQK 651

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   +  D  R+        A+ TGR +      QN+P +            
Sbjct: 652 LKSTYVDALPSQIDKDDNRVHTNFSQTTAA-TGRLASVNPNLQNIPIRTLR--------- 701

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   ++  GKK++ AD + IE R++A I+GE+  IKAF +G
Sbjct: 702 ---------------GQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQDG 746

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCGLDLQQ 461
           EDI+ +T AK F  P+ +VSK QR+  K +   + Y  GA           +     ++ 
Sbjct: 747 EDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFALAEQTGLSRTEAKQMIEA 806

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           + +       +   +  ++  L                      ++      AV   + G
Sbjct: 807 YFETYPKLKEYMAEQVNKARQLGYVETILGRKRHLKDINSNNFVVRGHAERNAVNAPVQG 866

Query: 501 TACELVKKAWRAKHQ 515
           +A ++VK A     +
Sbjct: 867 SAADIVKIAMIKIDR 881


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/590 (15%), Positives = 189/590 (32%), Gaps = 110/590 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR- 62
           L +D ET S  P+           A +   ++A +++                ++   + 
Sbjct: 350 LSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFKP 399

Query: 63  ---DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116
              +  ++ V  N  ++  +     G+ +  K  +  ++LA     P    ++      L
Sbjct: 400 IYENPDILKVGQNLKYDLEVLHNY-GVTLKGK--MFDTMLAHYVIQPELRHNMDYMAETL 456

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +     ++E   LI    K        D              EY   D + T +L   
Sbjct: 457 -LNYRTIHIDE---LIGPRGKNQKSMRELDPKEV---------YEYAAEDADITLQLKNV 503

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L              + E  L  +   I   G  ID D + +   ++ +  +  + +I +
Sbjct: 504 LETKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQ 563

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      +   LF    I        T + + S   + QL     +       
Sbjct: 564 LAGEEF-NISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKILEY 622

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + ++   G +  +      + TGR S      QN+P         
Sbjct: 623 RGLKKLLGTYVDALPKLINPRTGHIHTSFN-QAITATGRLSSSDPNLQNIP--------- 672

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                            G     +R C I   G     AD + IE RV+A ++ +   I+
Sbjct: 673 ---------------VRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIE 717

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +G DI+  T AK +  PI++V++++R   K     + Y     G A+          
Sbjct: 718 AFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYGITTYGLAQRLDIDNREAK 777

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495
             ++ + +       + +  +A++                     H+  ++      A+ 
Sbjct: 778 ELIEGYFETFPQVYEYMERAKADARAKGYAETLFHRRRYLPDINSHNATVRGYAERNAIN 837

Query: 496 DKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
             + G+A +++K A                 +LQ+  +L        +E 
Sbjct: 838 APIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDELNFSVYPDEKEK 887


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 179/511 (35%), Gaps = 73/511 (14%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D+ ++S   + L   L    ++ + +N  F  +L  +  GI + +   I     A   G 
Sbjct: 497 DQIKESEALAALKPVLESTGLLKIGYNIKFLAVLLAQH-GITLQNVDDILLMSYALDAGR 555

Query: 106 PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLF 159
            S    SL    LA         +  GK  +  F + +ID        A  V  + W++ 
Sbjct: 556 GSHKLDSLAEHVLAHAIISEGELIGSGKNKLT-FEQVAIDRATAHAAEAADVIHRVWRVL 614

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                   E    +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +
Sbjct: 615 KPRLT--AERMTAVYETL------ERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAAR 666

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---- 275
           ++ ++ +L    I +      +   LF   G+     ++ T     S S +  LA+    
Sbjct: 667 VEAELQELAGEPI-NVGSPKQIGDILFGKMGLSGGTRTK-TGAWSTSASILDDLAEQGND 724

Query: 276 --DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
               IL     S       + L   V+       T     A+ TGR S      QN+P +
Sbjct: 725 FARKILEWRQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 784

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G KLV AD + IE R+LA IA
Sbjct: 785 TED------------------------GRKIRRAFIATPGYKLVSADYSQIELRLLAEIA 820

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 +AF +G DI+  T ++ F  PI  +  E R   K +   + Y     G A    
Sbjct: 821 DIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLG 880

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    ++++ +       + D                     + + ++ +  ++  
Sbjct: 881 IAREEASAYIKRYFERFPGIRAYMDETREFCRKNGYVVTLFGRKCHYPEIKASNASVRAF 940

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               A+  +L GTA +++++A     + + Q
Sbjct: 941 NERAAINARLQGTAADIIRRAMTRVEEALAQ 971


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/636 (18%), Positives = 207/636 (32%), Gaps = 166/636 (26%)

Query: 56  DLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLK 110
           +++  L     D      AHN+ F+  +    LG+ I  +     T + A   G  + LK
Sbjct: 410 EVVAALGPFFADPNKAKYAHNAKFDIEML---LGVGIEVQGLAFDTMIAAALLGKRAGLK 466

Query: 111 NACLALNFSEHLTKMEEGKALIAR------FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           +  LA    +    M   + LI R      F +  I                +    Y  
Sbjct: 467 D--LAFYELQLPDPMTPIEDLIGRGTKQISFAQVPI----------------ERATPYAA 508

Query: 165 RDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            D + T  L   L P               E  L  +   +   G  +D   +  L + +
Sbjct: 509 ADADMTLRLVHALEPQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRM 568

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNIT 271
                 ++++I ++ +G   +   +  L   LF   G+  + V+ +  T K  ++   + 
Sbjct: 569 GTRIAAIEQEIYQIAEGPF-NINSSDQLSDILFGKIGLSTEGVERTAKTKKYSITADTLE 627

Query: 272 QLAK-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           +L +       + IL     S      ++ L   V+   GR+  T    GA+ TGR S  
Sbjct: 628 RLRERDTSGICERILEYRRLSKLKSTYVDALPALVNPRTGRVHTTYNQVGAA-TGRLSSN 686

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +                              +R   +A+ G + + AD + 
Sbjct: 687 DPNLQNIPVRT------------------------QEGREIRRGFVAAPGHRFIAADYSQ 722

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA+I  +   ++AF  G+DI+  T A+ F   ID+V KEQR I K +   + Y  
Sbjct: 723 IELRVLAYITKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIY-- 780

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           G   F                                            A + ++  +  
Sbjct: 781 GISAFG------------------------------------------LAQRTEMGRSEA 798

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           + +  +   +  G+                   ++   +   V + +  R +    +   
Sbjct: 799 QDLINSLFTRFPGIRDY-------------INRTLEQGQTTGVVQTIFGRQRAMPELQSR 845

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATK 619
             RR                     RE           +Q  + DI+   M    +  ++
Sbjct: 846 GPRRAAA-----------------EREAINAP------IQGTAADIMKIAMIKMARALSE 882

Query: 620 NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
            G    ++L VHDE++ E P+     V  L   +M 
Sbjct: 883 RGLRTRLLLQVHDELILEAPEEEVALVAELVREVMA 918


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/574 (17%), Positives = 192/574 (33%), Gaps = 103/574 (17%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S       L  + +  YA +A            P    D+ +  A+  +    L 
Sbjct: 374 DTETTSLVAIEAELVGLALSYYAGEAYYVPF-------PA---DKAQTQAILEEFRGVLE 423

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
            E +  +  N  ++  + KK   I+I  + +  T + +      +      +A  +  + 
Sbjct: 424 SENIKKIGQNLKYDITVLKKY-NIEIKGECF-DTMLASYLLDPDNRHSMDAMAEKYLNY- 480

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
           + ++    +  +  K +      D          Q   EY   D + T +L +   P   
Sbjct: 481 SPVKIDTLIGKKSTKNTTQGNMRDVEV-------QKVVEYAGEDADITLQLKEYFAPKVA 533

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                       E  L  +   I   G RID   + +  E++ ++ K L++ I  L+  +
Sbjct: 534 ERPILEKLFKTVEMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIYTLSGEV 593

Query: 232 IRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +     L   LF    +             T + +L+     ++ + ++  R     
Sbjct: 594 FNIA-SPQQLGKVLFEKLNLMKNPPKTKTGQYATGEEVLTKLTDNEIVQQILEIR-ELQK 651

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   VS  DGRL  +        TGR S      QN+P +            
Sbjct: 652 LKSTYVDALPALVSKIDGRLHTSYN-QAVVATGRLSSTNPNLQNIPIKTAK--------- 701

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   I ++    ++ AD + IE R++A  + ++  ++AF N
Sbjct: 702 ---------------GREIRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMMEAFNN 746

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
           G DI+  T +K +   I +V+ + R + K    A+ Y   A       K   S     + 
Sbjct: 747 GTDIHTATASKIYKIDIQEVTADMRRMAKTANFAILYGSSAFNLSAQLKISTSEAKKLID 806

Query: 461 QFSQNVKSTSTFEDWEQAESHHL--------------------WMQDQYPEFAVKDKLIG 500
            +     +   F+D    ++                        +  Q    AV   + G
Sbjct: 807 SYYGEFSAVKKFKDEMIQKARQFEYAETFLGRRRYLAGINGGAMVSGQAERNAVNSPIQG 866

Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524
           TA +++K A    H          + +LQ+  +L
Sbjct: 867 TAADMIKLAMIDIHRFMMREKMQSKMILQVHDEL 900


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/494 (17%), Positives = 152/494 (30%), Gaps = 69/494 (13%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           RD  V+ V HN  F+  +       D+                L     +    L+    
Sbjct: 398 RDPGVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRR 457

Query: 122 LTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               EE    GK  I  F +  +D           V          +   E    + + L
Sbjct: 458 TITFEEVCGKGKGQIT-FDQVPLDKAVAYAAEDADVTLRLYLLLRDRLLKEHMVRVHETL 516

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +R +  +   +   G R+D   +  L    A+    L++ I  L      +   
Sbjct: 517 ------DRPMVRILTDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALAGHAF-NVAS 569

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILK 291
              L   LF    +     S  T         + QLA +       +L+    +      
Sbjct: 570 PKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTY 629

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            + L   +    GR+  T      + TGR S      QN+P +  +              
Sbjct: 630 TDALVAEIDERTGRVHTTYGL-TVTATGRLSSNDPNLQNIPVRSEA-------------- 674

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   IA+ G  L+ AD + IE R++A +AG     +AFA G+DI+ 
Sbjct: 675 ----------GRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQAFAEGKDIHA 724

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
            T ++ F  P++ +    R   K +   + Y     G A+            +  +    
Sbjct: 725 ITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAHGLAQQLGVGRPEAAAFITAYFARF 784

Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505
               ++ +  + E+                      +   +      A+   + G A ++
Sbjct: 785 PEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAARAFAERQAINAPIQGGAADI 844

Query: 506 VKKAWRAKHQGVLQ 519
           +K+A  A    + Q
Sbjct: 845 IKRAMIALPPALEQ 858


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/584 (16%), Positives = 183/584 (31%), Gaps = 100/584 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET   +P+    V      A     AY     PV   +R E   + ++      +
Sbjct: 381 LSIDTETTGTEPMDAELVGMSFSDAENR--AYYV---PVP-AEREEVLKIVNEFRPLFEN 434

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLALNFSEH 121
           E  M V  N  ++ I+ +   G+ +  K  +  ++LA     P      +    +     
Sbjct: 435 EKSMKVGQNIKYDMIILQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEIYLHYQ 491

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              ++E      +  K   D PP D               Y   D + T +L   L    
Sbjct: 492 TIHIDELIGARGKNQKNMRDLPPEDV------------YRYACEDADVTLKLKNVLEKEL 539

Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E  L  +   I   G  +D + + +  +      ++++++I ++    
Sbjct: 540 KEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGET 599

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      +   LF    I        T + + S   +        +         + K
Sbjct: 600 F-NISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKK 658

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + ++   GR+  +      + TGR S      QN+P +            
Sbjct: 659 LLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------------ 705

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   I   G +   AD + IE R++A ++ +   I AF +G
Sbjct: 706 ------------DEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSG 753

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T AK +   I+ V+ + R   K     + Y     G A+            +  
Sbjct: 754 HDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQEAKELIDG 813

Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + D                          S +  ++      A+   + G
Sbjct: 814 YFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAERNAINAPIQG 873

Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           +A +++K A    +Q           +LQ+  +L        +E
Sbjct: 874 SAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKE 917


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/531 (16%), Positives = 166/531 (31%), Gaps = 91/531 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +     D  +  +  N  F+ ++  + LG++I  + +  T +L       S      LA+
Sbjct: 435 IRPLFADGKIAKIGQNIKFDLMVLAR-LGVEIRGRLY-DTMILHYLLDPESRHNMDALAM 492

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  +        +LI +                  + + +   EY   D + T  L + 
Sbjct: 493 RYLNYRPI--SITSLIGK----------GARQLTMDMISLERVAEYAAEDADVTLRLKQV 540

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P            + E  +  +   I   G RID + + +    + +    L+ DI +
Sbjct: 541 LWPKVEELDLAGLYLEIEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRR 600

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L D    +      L   LF    I        T +       +   A    +       
Sbjct: 601 LADEPSLNVNSARQLGEVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEY 660

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL       L   V+   G++  +      + TGR S      QN+P         
Sbjct: 661 RGVKKLLSTYVEALPLLVNPVTGKIHTSFN-QAVTATGRLSSTNPNLQNIP--------- 710

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   I S+    L+ AD + +E R++A ++G++  I
Sbjct: 711 ---------------VRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLI 755

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +GED++  T A+ F   + +V  ++R   K     + Y     G ++         
Sbjct: 756 AAFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIYGISAFGLSQRLDIPRKEA 815

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494
              ++ +  +      + D    E+                                 AV
Sbjct: 816 KEIIEGYFASYPKVKEYMDRVVEEAKRDGYVSTIFGRRRYLNDIASRNAVARGLAERNAV 875

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
              + G+A +++K A     +           +LQ+  +L        QE 
Sbjct: 876 NAPIQGSAADIMKIAMIRVSRRFREEGIRSKVILQVHDELVVDMLRSEQER 926


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/545 (18%), Positives = 175/545 (32%), Gaps = 95/545 (17%)

Query: 54  PSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
           P D L  L+       V  V     F  +L  +  G+ + +         A   G  S  
Sbjct: 492 PRDALDALKPILESAGVAKVGFAIKFAAVLLAQH-GLTLRNIDDPQLMSYALDAGRGSHA 550

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +A    N    L  + E         K   D  P D   A           Y     + 
Sbjct: 551 LDALSESNLGHTLHTLTELTGTGK--NKIGFDQVPVDRATA-----------YAAERADV 597

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           +  L + L P              ER L  +   +  RG  ID  ++ +L    AQ   +
Sbjct: 598 SLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAAR 657

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278
           ++ +I +L    I +      L   LF   G+     ++ T     S   + +LA+    
Sbjct: 658 IEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHE 715

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             R       + KL     + L   V        T     A+ TGR S      QN+P +
Sbjct: 716 FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A+ G KLV AD + IE R+L+ +A
Sbjct: 776 TED------------------------GRKIRRAFVATPGNKLVSADYSQIELRLLSEVA 811

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 KAF +G DI+  T ++ F  P++ +  E R   K +   + Y     G A    
Sbjct: 812 DVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLS 871

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                 G  ++++ +       + D                     +   ++ +  ++  
Sbjct: 872 IPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVTTLFGRKCHYPDIKASNPSIRAF 931

Query: 489 YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSI 538
               A+  +L G+A +++++A           +   Q +LQ+  +L         E    
Sbjct: 932 NERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLP 991

Query: 539 SARRV 543
             R V
Sbjct: 992 VVRSV 996


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/584 (16%), Positives = 183/584 (31%), Gaps = 100/584 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET   +P+    V      A     AY     PV   +R E   + ++      +
Sbjct: 388 LSIDTETTGTEPMDAELVGMSFSDAENR--AYYV---PVP-AEREEVLKIVNEFRPLFEN 441

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLALNFSEH 121
           E  M V  N  ++ I+ +   G+ +  K  +  ++LA     P      +    +     
Sbjct: 442 EKSMKVGQNIKYDMIILQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEIYLHYQ 498

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              ++E      +  K   D PP D               Y   D + T +L   L    
Sbjct: 499 TIHIDELIGARGKNQKNMRDLPPEDV------------YRYACEDADVTLKLKNVLEKEL 546

Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E  L  +   I   G  +D + + +  +      ++++++I ++    
Sbjct: 547 KEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGET 606

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      +   LF    I        T + + S   +        +         + K
Sbjct: 607 F-NISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKK 665

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L + ++   GR+  +      + TGR S      QN+P +            
Sbjct: 666 LLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------------ 712

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   I   G +   AD + IE R++A ++ +   I AF +G
Sbjct: 713 ------------DEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSG 760

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T AK +   I+ V+ + R   K     + Y     G A+            +  
Sbjct: 761 HDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQEAKELIDG 820

Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + D                          S +  ++      A+   + G
Sbjct: 821 YFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAERNAINAPIQG 880

Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           +A +++K A    +Q           +LQ+  +L        +E
Sbjct: 881 SAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKE 924


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/541 (15%), Positives = 164/541 (30%), Gaps = 91/541 (16%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E   + +     L++   + +  N  F+ ++ +K  GI I    +  T +          
Sbjct: 408 EADKILAHFSPALQNPKSLKIGQNIKFDILVVRKY-GIRIAGPLF-DTMIAHYLLNPELR 465

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                     +E   K +  +       +        D       +       Y   D +
Sbjct: 466 HGMD----YLAETYLKYKTVRIEELIGPRERKQLTMRDVPVVQVAE-------YAAEDAD 514

Query: 169 ATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T +L     P            D E  L  +   +   G  +D   + +  E +    K
Sbjct: 515 ITLKLKNYFTPCLEKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALK 574

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           KL+++I +L      +      +   LF    I+       T     S   + ++     
Sbjct: 575 KLEKEIYELAGMKF-NINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHP 633

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +         + KL     + L E ++   G++  +      + TGR S      QN+P 
Sbjct: 634 VVGKLLEYRGLKKLLSTYIDALPELINPETGKIHTSYN-QAVTSTGRLSSTNPNLQNIP- 691

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAW 391
                                          +R    A         AD + IE R++A 
Sbjct: 692 -----------------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAH 728

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           ++ +   I+AF +G DI+  T AK +  P+++V+ + R   K     + Y     G A+ 
Sbjct: 729 LSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAER 788

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                +     ++ + +       + D                          SH+  ++
Sbjct: 789 LSIPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHNAIVR 848

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGG 536
                 A+   + G+A +++K A             K + +LQ+  +L         E  
Sbjct: 849 GYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDELEKV 908

Query: 537 S 537
            
Sbjct: 909 K 909


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 183/553 (33%), Gaps = 105/553 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A     A+ +   P +L D     A  + L  +L  E    +  N  +++ +F    GI 
Sbjct: 360 AAYLPLAHRYPGVPDQL-DL---DATLARLRPWLESEQHKKLGQNLKYDKHIFANH-GIA 414

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIAR---FCKGSIDSP 143
           +       T + +       S     LAL          EE     A+   F +  +D  
Sbjct: 415 LRGISD-DTLLESYVLESHKSHDMDSLALRHLGVKTISYEEVAGRGAKQICFDQVDLD-- 471

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQ 192
                         +   Y   D + T +L + L P             D E     +  
Sbjct: 472 --------------IATRYAAEDADITLQLHQSLAPEITGKTGLQHVYRDIELPAMQVLF 517

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  +D +L+      +  +   L+    +  +    +      ++  LF    + 
Sbjct: 518 VMERNGVLLDANLLHVQSHELGVKLIALEARAHEAAEQPF-NLNSPKQIQEILFDKLKLP 576

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLR 306
           +   +     S      + +LA D  L ++      + KL     + L + V+ + GR+ 
Sbjct: 577 VKKKTPSGAPST-DEEVLQELALDYPLPKILLEYRGMAKLKSTYTDKLPKMVNRATGRVH 635

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            +      + TGR +      QN+P +                              +R 
Sbjct: 636 TSYS-QAVAVTGRLASSDPNLQNIPIRS------------------------AEGRRIRE 670

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             IA +G  +V AD + IE R++A ++G+   ++AFA  ED++  T A+ F T    V+ 
Sbjct: 671 AFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFAKNEDVHRATAAEIFMTTPVDVTT 730

Query: 427 EQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-- 480
           EQR   KV+   L Y       AK            + ++         + D  + ++  
Sbjct: 731 EQRRYAKVINFGLIYGMSAFGLAKQLGIERGAAQAYIARYFARYPGVRDYMDSTREQAKQ 790

Query: 481 ---------HHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRA--------- 512
                      LW+          +      A+   + GTA +L+K A            
Sbjct: 791 QGYVETVFGRRLWLPEINSSNAMKRQGAERAAINAPMQGTAADLIKLAMIQVQGWLETEK 850

Query: 513 -KHQGVLQLWKDL 524
            K + ++Q+  +L
Sbjct: 851 LKTRLIMQVHDEL 863



 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652
           Q  + D++   M          K    +++ VHDE+V E PD     +   L  LM 
Sbjct: 828 QGTAADLIKLAMIQVQGWLETEKLKTRLIMQVHDELVLEVPDDELSLIKASLPGLMC 884


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/571 (17%), Positives = 190/571 (33%), Gaps = 111/571 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLC-----AYAWDDE----PVKLW------DRT 48
           L ID ET S   L        AE   I+LC     A A D+     P   W         
Sbjct: 316 LVIDTETTSLNALR-------AELVGISLCPLPAAATAADNSQPTPPPTAWYLPIGHRLA 368

Query: 49  EQSAMPSDLLQY---------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           + S  P  L            L D  ++ + HN  ++  + K      +     +  S++
Sbjct: 369 DGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSH---GLELAAPLADSMI 425

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
           A     P        +    +  +++ E    +  F    + +         +V+     
Sbjct: 426 ASYLIDPGR-----RSHKLDDLSSELLE--RQLTSF--AEVSAGDRRPEAFAYVEP-AAA 475

Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             Y  +DV A+R L++   P          L + E  L  +   +   G  +D  ++ +L
Sbjct: 476 CRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDPAVLDEL 535

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           +    +E  +L+  I +L      +      L   L+    +     ++G       +  
Sbjct: 536 EREFGRELARLESKIAELAGESF-NINSPRQLGEVLYERLKLPHGRKTKGKTGYSTDYRE 594

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + +LA    L     S   + KL     + L+  +   DGR+  T      + TGR S  
Sbjct: 595 LERLAAYHDLPAAVISHRNLSKLKSTYVDKLATLIDPADGRVHTTFN-QTVTATGRLSSS 653

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +                              +R+  +A+ G   + AD + 
Sbjct: 654 NPNLQNIPIRT------------------------PEGRRLRAAFVAAAGHLFLAADYSQ 689

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           I+ RVLA  +G+    +AFA+ +DI+  T A+ F      VS + R + K +   + Y  
Sbjct: 690 IDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGM 749

Query: 444 G----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------- 485
                A+  +         + ++ +  +    F      ++                   
Sbjct: 750 SAFGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARRDGWVGTLLNRRRPLPEI 809

Query: 486 -------QDQYPEFAVKDKLIGTACELVKKA 509
                  ++     A+   + GTA +++K A
Sbjct: 810 NSGNKMRREFAERTAINTPIQGTAADIIKLA 840



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 16/219 (7%)

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK--DKLIGTACE 504
            F   A H  L       +++  + +      +      QD +   A +      G    
Sbjct: 673 AFVAAAGHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSA 732

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +++  +  + G++               ++       R   + + V+R  +  V     
Sbjct: 733 DMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARR 792

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATK 619
                   + +     +N+     MR            +Q  + DI+        +   +
Sbjct: 793 DGWVGTLLNRRRPLPEINSGNK--MRREFAERTAINTPIQGTAADIIKLAAIACDRALRE 850

Query: 620 NGYD--IVLTVHDEIVSETPDTPYFSV-----GTLCSLM 651
            G     +L +HDE++ E P      V       +  +M
Sbjct: 851 AGCRSEALLQIHDELIFEVPQDELAQVGPLIRQAMEEVM 889


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 189/576 (32%), Gaps = 117/576 (20%)

Query: 4   LFIDIETRSPQPLP----------------------------KVGVWAYAEQAVITLCAY 35
           L ID ET S  PL                             + G   Y         A+
Sbjct: 317 LVIDTETTSLDPLQAELVGISLTLAAPGSDESEAKASRTAAGENGACWY------LPIAH 370

Query: 36  AWDDEPVKLWDRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKT-LGIDIP 89
             +D           + +P +++ + L     D+  + + HN  ++  +  +  L +  P
Sbjct: 371 RREDG------SAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRHDLPLAPP 424

Query: 90  SKRWICTSVL----ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
               +  S L     R++GL   L    L    +      +  +   A        +  Y
Sbjct: 425 LADTMIASYLIDPSRRSHGLDV-LSEELLQRRLTSFAEVTDRDRRPEAFAHVAPAAAAAY 483

Query: 146 DCTRANHVQA-WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            C      +  WQLF         A  EL +        E  L  +   +   G  +D  
Sbjct: 484 SCEDVAATRLLWQLFQPKL-----AELELAELFY---QVEITLLPILARMERVGILLDGQ 535

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           ++ +L    +QE ++L   I +L      +      L   LF    +     ++G     
Sbjct: 536 VLKELAAEFSQELERLSSKIYQLAGVEF-NINSPRQLGEVLFERLKLPHGRKTKGKTGYS 594

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318
                + +LA    L     +   + KL     + LS  ++  DGR+  +      + TG
Sbjct: 595 TDIRELERLAAYHDLPAAIIAQRNLSKLKSTYVDKLSTLINPADGRIHTSFN-QTVTATG 653

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P +                              +R   IA+ G + + 
Sbjct: 654 RLSSSNPNLQNIPVRT------------------------QEGRRIRGAFIAAPGHRFLA 689

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + I+ RVLA  + +   ++AF   +DI+  T A+ F      V+ + R + K +   
Sbjct: 690 ADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVAKTINFG 749

Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQD 487
           + Y       A+  +       + + ++ +  +   TF +    ++         L  + 
Sbjct: 750 IIYGMSAFGLAEQLRCSRKEAQVFIDRYFELYRGVKTFMEEIVEQARRDGFVRTLLKRRR 809

Query: 488 QYPEF--------------AVKDKLIGTACELVKKA 509
           Q PE               A+   + GTA +++K A
Sbjct: 810 QLPEINSSNKLRREFAERTAINTPIQGTAADIIKLA 845



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 8/126 (6%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
             ++   +   R   + R V    +  V               +     +N++    +R 
Sbjct: 765 CSRKEAQVFIDRYFELYRGVKTFMEEIVEQARRDGFVRTLLKRRRQLPEINSSNK--LRR 822

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DI+        +         + +L +HDE++ E P+    +V
Sbjct: 823 EFAERTAINTPIQGTAADIIKLAAIACDRELRRKNFNTEALLQIHDELIFEVPEDEQAAV 882

Query: 645 GTLCSL 650
           G L   
Sbjct: 883 GKLVQQ 888


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/505 (17%), Positives = 164/505 (32%), Gaps = 81/505 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLA 115
               L D  +  V  N  ++ +L  +    D+  K  +  ++LA       +      LA
Sbjct: 406 FKPVLEDANIEKVGQNIKYDILLLSRY---DVKVKGTLFDTMLAHYLIDPDTRHGMDVLA 462

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
            N+  ++        LI    KG       D          +L  EY   D + T +L +
Sbjct: 463 ENYLGYIP--VSITKLIGE--KGKKQGNMRDVEI-------ELIKEYASEDADITLQLKE 511

Query: 176 RLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           +  PL +           E  L  +   I   G +ID+D++    + I ++ + L+  I 
Sbjct: 512 KFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIY 571

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILN 280
           +        +     L   LF    +D       T +       +  LA        IL+
Sbjct: 572 EKAGVKFNIA-SPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILD 630

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      ++ L   ++    L  T      + TGR S      QN+P +       
Sbjct: 631 FRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVAATGRLSSTNPNLQNIPIRTER---- 686

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR   I       ++ AD + IE R++A ++ +   +
Sbjct: 687 --------------------GREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
           +AF  G DI+  T AK +   +D+VS +QR   K +   + Y   A    +         
Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREA 786

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              + Q+ Q       +     A +                      ++ ++      A+
Sbjct: 787 ADIIDQYFQQYSGIRDYMAKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAI 846

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519
              + G+A +++K A     + + Q
Sbjct: 847 NAPIQGSAADMIKVAMLRIQEDIEQ 871


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/553 (17%), Positives = 189/553 (34%), Gaps = 97/553 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDLLQYLR 62
           D ET S   L          +A +   A++W+      + L  D+TE   +      +  
Sbjct: 372 DTETTSLNAL----------EAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPFKAFFE 421

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
              +  + HN  ++  + +     DI  K  +  +++A              LA  +  +
Sbjct: 422 HPEIEKIGHNLKYDLKVLRNY---DIHVKAPLFDTMIAHYLINPDMRHNMDILAETYLNY 478

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR----- 176
               +    LI +  KG       + +        +   EY   D + T +L +      
Sbjct: 479 SA--QSITELIGK--KGKNQGTMREVSL-------EQQTEYAVEDADITLQLKEYFHEEM 527

Query: 177 -----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                L      E  L  +   +   G  +D+  +  L   +A++ +KL+  I ++    
Sbjct: 528 STAKTLELYQKVELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVAGEN 587

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              +     L + LF    +        T +   +   ++ LAKD  +        ++ K
Sbjct: 588 FNLA-SPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDILDWRSLQK 646

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   ++   GR+         + TGR S      QN+P +            
Sbjct: 647 LQNTYVDALPNEINPKTGRVHTIYN-QAVAATGRLSSNNPNLQNIPIRTER--------- 696

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             VR   I       L+ AD + IE R++A ++G++  + AF N
Sbjct: 697 ---------------GQQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGMLSAFQN 741

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            EDI+  T +K FN P+++V++EQR   K +   + Y     G ++      S     ++
Sbjct: 742 NEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVSAFGLSQQTNLNRSEAKELIE 801

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            +        ++                        +   S +  ++      AV   + 
Sbjct: 802 TYYATYPKLRSYMQDQVDFARDNGYVSTVLGRRRYLKDINSQNAIVRGAAERNAVNAPIQ 861

Query: 500 GTACELVKKAWRA 512
           G+A +++K A  A
Sbjct: 862 GSAADIIKLAMIA 874



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M           +   ++L VHDE+V + P     ++  +  
Sbjct: 860 IQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVPKEEINTLQEMVK 913


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 108/622 (17%), Positives = 214/622 (34%), Gaps = 111/622 (17%)

Query: 1   MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +  +  D ET S  PL          +A +   A++W+          +       L+
Sbjct: 365 MKQKSVCFDTETTSLNPL----------EAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLI 414

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113
           + LR       +  +  N  ++  +  K     I  +     +++A              
Sbjct: 415 ELLRPFFESPEIEKIGQNLKYDIKVLDKY---GIKVEGPTFDTMIAHYLINPDMRHNMDI 471

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           LA  +  +    +    LI +  KG       D   A   +       Y   D + T +L
Sbjct: 472 LAETYLNYTP--QPISELIGK--KGKNQKSMRDVPLAEQTE-------YAAEDADITFQL 520

Query: 174 FK------------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            +            +L   ++ E  L  +   +   G  +DLD + KL E + ++ K+L+
Sbjct: 521 KEFFEKELDEAKTRKLF--NEIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELE 578

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
             I +      + S     L + LF    +        T +   S   ++ LA +  + +
Sbjct: 579 AKIYEAAGEEFKIS-SPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQ 637

Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                  ++KL     + L   V    GR+        A+ TGR S      QN+P +  
Sbjct: 638 HVLDYRGLVKLQNTYVDALPGQVEKSSGRVHTDYVQTIAA-TGRLSSNNPNLQNIPIRTE 696

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       VR   I   +   L+ AD + IE R++A ++ 
Sbjct: 697 R------------------------GRQVRKAFIPRSDDYVLLAADYSQIELRIIAALSE 732

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           E+  IKAF +GEDI+ +T ++ FN P+++V++EQR+  K +   + Y     G +     
Sbjct: 733 EETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSL 792

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489
             S     +  + +     S +   + A +                      +  ++   
Sbjct: 793 SRSESKELIDTYYKTYPKLSNYIADQVAYAREHGYVSTILGRRRYLKDINSQNAVVRGAA 852

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              AV   + G+A +++K A    H+ +               +    +    V +V + 
Sbjct: 853 ERNAVNAPIQGSAADIIKIAMINIHKKL--------GEEKLQTKMLLQVHDELVFDVYKP 904

Query: 550 VMRRHKRDVHIVLPSSRRLVYS 571
            + + K+ +   + ++ +L   
Sbjct: 905 ELDQVKKLIKSEMENAYQLNVP 926


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/541 (17%), Positives = 172/541 (31%), Gaps = 110/541 (20%)

Query: 49  EQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               MP  L           +L       V  +  ++  +     GI++       T + 
Sbjct: 378 RGPDMPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLE 435

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQA 155
           +       +     LAL        K E+  GK      F + ++               
Sbjct: 436 SYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD--- 492

Query: 156 WQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLD 204
                         T +L + L P             + E  + L+ + +   G  ID  
Sbjct: 493 -------------ITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDA 539

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            +      IA     L+     L  G   +      +    F    + +V  +     S 
Sbjct: 540 RLQAQSNEIATRLVDLEAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST 598

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318
                + +LA+D  L +L      + KL     + L   V+   GR+         + TG
Sbjct: 599 -DEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTG 656

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R +      QN+P +                              +R   IA+ G ++V 
Sbjct: 657 RLASNDPNLQNIPVRT------------------------AEGRRIREAFIAAPGHRIVS 692

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   
Sbjct: 693 ADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFG 752

Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHL 483
           L Y       A           L + ++       + + +  +A +             L
Sbjct: 753 LIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRL 812

Query: 484 WM----------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKD 523
           W+          +      A+   + GTA +L+K +  A            + ++Q+  +
Sbjct: 813 WLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDE 872

Query: 524 L 524
           L
Sbjct: 873 L 873


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/585 (15%), Positives = 189/585 (32%), Gaps = 104/585 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYL 61
            ID ET S   +           A +   +++ +++    V +    E++     + + L
Sbjct: 351 SIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400

Query: 62  -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
              + +M +  N  ++  +  +  G+ +  K  +  +++A     P    N       +E
Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY-GVTLQGK--MFDTMIAHYLIQPELHHNMD---YMAE 454

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            L   +          KG       D +  +         EY   D + T  L   L P 
Sbjct: 455 TLLGYQTIHIEELLGPKGKKQKNMRDLSPTDI-------YEYAAEDADITLRLKNVLEPR 507

Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      + E  L  +   +   G  +D + +    ++  +  K+ +++I K    
Sbjct: 508 LKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAGE 567

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +   LF    I        T + + S   +  L     + R   +   + 
Sbjct: 568 EF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYRGMK 626

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + ++   G +  +      + TGR S      QN+P +           
Sbjct: 627 KLLSTYIDALPKLINPRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD-------- 677

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R C I  +G     AD + IE R++A ++ ++  ++AF  
Sbjct: 678 ----------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G DI+  T AK ++  IDKV+  QR   K     + Y     G A+            ++
Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                          S +  ++      A+   + 
Sbjct: 782 GYFRTFPKVQVYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           GT  +++K A             + + +LQ+  +L        +E
Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/590 (15%), Positives = 186/590 (31%), Gaps = 110/590 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60
           L +D ET S   +           A +   ++A  ++    V +    E++    ++ + 
Sbjct: 353 LSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIFKP 402

Query: 61  L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
           L  +  ++ V  N  ++  +    +   I  +  +  ++LA       L  ++       
Sbjct: 403 LYENPEILKVGQNIKYDYEVL---INYGIEIQGKMFDTMLAHYLIQPELYHNMDYLAEVF 459

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +     +EE   LI    KG       D   ++         EY   D + T  L   
Sbjct: 460 -LNYQTIHIEE---LIG--PKGKNQKSMRDLAPSDI-------YEYAAEDADITLRLKNV 506

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L              + E  L  +   +   G  ID D + +  E +     +++  I +
Sbjct: 507 LESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHHIYE 566

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L       +     +   LF    I        T + + S   + QL     +     + 
Sbjct: 567 LAGESFNIA-SPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEILNY 625

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + ++S  G +  +      + TGR S      QN+P         
Sbjct: 626 RGLKKLLGTYIDALPKLINSRTGHIHASFN-QAITATGRLSSSDPNLQNIP--------- 675

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R C I   G     AD + IE R++A ++ +   ++
Sbjct: 676 ---------------VRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVE 720

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T AK ++  I +V+  QR   K     + Y     G A+          
Sbjct: 721 AFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYGITTFGLAQRMNIENREAK 780

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             ++ + +       + +                          S +  ++      A+ 
Sbjct: 781 QIIEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHRRRYLPDINSKNGTVRGFAERNAIN 840

Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
             + G+  +++K A             + + ++Q+  +L        +E 
Sbjct: 841 APIQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYPEEKEK 890


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/507 (19%), Positives = 172/507 (33%), Gaps = 77/507 (15%)

Query: 47  RTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                    D L  L+       ++ +  N  F  +L  +  GI + +   I     A  
Sbjct: 480 LAPDQVKDRDALAALKPVLESAGILKIGFNIKFVAVLLAQH-GITLANVDDIQLMSYALD 538

Query: 103 NGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAW 156
            G  S    SL    LA         +  GK  +  F + +ID        A  V  + W
Sbjct: 539 AGRGSQKFESLAEHVLAHAVLGEGELVGSGKNKLT-FEQVAIDRATAHAAEAADVIHRLW 597

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           ++         E    +++ L      ER L  +   +  RG  ID  ++ +L    AQ 
Sbjct: 598 RVLKPRLV--AERMTAVYETL------ERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQT 649

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK- 275
             +++ ++ +L    I +      +   LF   G+     ++ T     S S +  LA+ 
Sbjct: 650 AGRVEAELQELAGEPI-NVGSPKQIGDILFGKMGLPGGTKTK-TGAWSTSASILDDLAEQ 707

Query: 276 -----DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  IL     S       + L   V+   +   T     A+ TGR S      QN+
Sbjct: 708 GNDFARKILEWRQVSKLKSTYTDALPTYVNPQSQRVHTTYALAATTTGRLSSNEPNLQNI 767

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   IA+ G KLV AD + IE R+LA
Sbjct: 768 PVRTED------------------------GRKIRRAFIATPGHKLVSADYSQIELRLLA 803

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            IA      +AF +G DI+  T ++ F  PI  +  E R   K +   + Y     G A 
Sbjct: 804 EIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLAN 863

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485
                       ++++ +       + D                     + + ++ +  +
Sbjct: 864 QLGIAREEASAYIKRYFERFPGIRAYMDETREFCRKHGYVTTLFGRKCHYPEIKASNASV 923

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA 512
           +      A+  +L GTA +++++A   
Sbjct: 924 RAFNERAAINARLQGTAADIIRRAMTR 950


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/512 (16%), Positives = 157/512 (30%), Gaps = 80/512 (15%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            +   A DD    L D     A  + +   L+D  +    H+      L        +  
Sbjct: 403 LMAGLAADDNTALLLDLNAPEA--TAIRDALKDPALPKTTHDLK---SLLHTAGQRGLEI 457

Query: 91  KRW-ICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                   + +        S K A +A    + +T + + +            + P   +
Sbjct: 458 ANVAHDVMLYSYLINPTHGSHKLADVAARMGQSITPLVKNQT-------PPATALPEAAS 510

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             + +                  E  + L P  + +  L  +   +   G RID  ++  
Sbjct: 511 AIHRLAPALR----------IQAEEGELLKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRD 560

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           +   +A +   L E I  ++     +      L   LF    +              +  
Sbjct: 561 MSSKLAVDMDALAERIYAMSGHRF-NINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQD 619

Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA       L      + KL +     L +    +GR+  T    G + TGR S  
Sbjct: 620 VLEELAAHHEAPALVLEYRQLAKLRSNYTEQLPQLADREGRVHTTFNQVG-TATGRLSST 678

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +                              +R+  I + G  L+ AD + 
Sbjct: 679 NPNLQNIPTRT------------------------ALGREIRAAFIPAEGNVLLSADYSQ 714

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R++A  + +   + A+  G+DI+  T A+ F    + + KE R   K +   + Y  
Sbjct: 715 IELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIVYGI 774

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G A           L ++++ +     + F +                         
Sbjct: 775 SPFGLAAQLGIPQGEAKLYIERYRERYAGVTAFIERTISDTRSTGKVSTLFGRTRPIPDI 834

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            S +   +      AV   L GTA +++K A 
Sbjct: 835 GSRNPNQRGFAERTAVNTPLQGTAADMIKIAM 866



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
           Q  + D++   M               + L VHDE++ + P      V  L  L
Sbjct: 855 QGTAADMIKIAMLKIDAALTERKLATRMTLQVHDELLFDAPVGETEEVAALVKL 908


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/576 (18%), Positives = 188/576 (32%), Gaps = 105/576 (18%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
           D ET S  P+    VG+    E  +A     A+     P    D  EQ  +   L +   
Sbjct: 69  DTETTSLDPMVAQLVGLSFSTEPGKAAYLPVAHR---GP----DLPEQLPLDDVLARLKP 121

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118
            L       V  +  ++  +     GI++       T + +       +     LAL   
Sbjct: 122 WLESAERKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSLALRHL 179

Query: 119 SEHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                K E+         G   +A        +   D T   H   +          V  
Sbjct: 180 GVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHHALYPQ--------VAR 231

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L +      + E  + L+ + +   G  ID   +      IA    +L+    +L  
Sbjct: 232 EPGLQRVYR---EIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIELEGQAYELAG 288

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G   +      +    F    + +V  +     S      + +LA+D  L +L      +
Sbjct: 289 GEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHRGL 346

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L   V+   GR+         + TGR +      QN+P +          
Sbjct: 347 SKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT--------- 396

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IAS G ++V AD + IE R++A I+G+   ++AF+
Sbjct: 397 ---------------AEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFS 441

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
            GEDI+  T A+ F     +V+ +QR I KV+   L Y       A           L +
Sbjct: 442 QGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYI 501

Query: 460 QQFSQNVKSTSTFED-----------WEQAESHHLWM----------QDQYPEFAVKDKL 498
            ++       + + +            E      LW+          +      A+   +
Sbjct: 502 DRYFARYPGVAQYMEDTRTVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPM 561

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524
            GTA +L+K +  A            + ++Q+  +L
Sbjct: 562 QGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 597


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 119/672 (17%), Positives = 227/672 (33%), Gaps = 150/672 (22%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAM-PSDLLQ 59
           D ET S       L  +G            C +  +   +       T+   +   ++L 
Sbjct: 373 DTETTSLEPRDANLVGIG------------CCWGSELSDLAYIPLNHTQGEMLNIEEVLP 420

Query: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            LR     E       N+ F+R++  ++ GI +    +  T + +      SS     L+
Sbjct: 421 ALRPILESENYPKTLQNAKFDRLIL-RSQGITLKGVVF-DTMLASYVINPESSHNLTDLS 478

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +   L  + +  + +    K   D           +  +  F        +  +++ K
Sbjct: 479 LRYLPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQI-----TQKMQDILK 533

Query: 176 RLIPLSD----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            + PL+D     E+ L  +   +  +G RID D + +L + + +  + L++   +    +
Sbjct: 534 DVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGETLESLEKASHQAAGEV 593

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +D     +         + + +L  D  +         + K
Sbjct: 594 F-NLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVINYILEYRTLSK 652

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E V SD GR+         + TGR S      QN+P +            
Sbjct: 653 LKSTYVDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRT----------- 700

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   I  +G  LV AD + IE R+LA ++ E   I+A+   
Sbjct: 701 -------------EFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKMLIEAYNTN 747

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D++  T    F+   D+++ ++R +GK++   + Y  G++                   
Sbjct: 748 QDVHSLTAQLLFDK--DEITADERRLGKIINFGVIYGMGSQ------------------- 786

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                     FA +  +  TA +     + +++ GV +    L 
Sbjct: 787 -------------------------RFAREVGVSATAGKQFIDRFNSQYPGVFEY---LE 818

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-DCSYLNTAT 584
                 + +G                       ++     RR  +  +KG D   LN   
Sbjct: 819 SQKLAAINQG-----------------------YVETILGRRRYFESLKGRDRDRLNYQD 855

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTP 640
            Q++R            +Q  S DI+   M    +    Y   ++L VHDE+V E P + 
Sbjct: 856 EQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQVHDELVFEVPLSE 909

Query: 641 YFSVGT-LCSLM 651
           +  +   + S M
Sbjct: 910 WEELQHQIKSTM 921


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 91/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            LA        L      L   E +     +   L+A     +  +P     R       
Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398

Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
             F E        +  LF+ L P           + ER L  +   +  RG R+D+ L+ 
Sbjct: 399 -EFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L   + +E ++L+ +I +L      +      L   LF   G+  V  +E T K   + 
Sbjct: 458 ALSFELEKEMERLEGEIFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQ 516

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             +  L     +  L      + KL     + L   V    GRL        A+ TGR S
Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   +A  G  L+ AD 
Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671

Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484
              A    +            ++++ Q+      + +    E                  
Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731

Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532
                   +++     A    + GTA +L+K A       +      L   + +     V
Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791

Query: 533 QEGGSISARRVAN 545
            E  +  A+ +  
Sbjct: 792 PEDRAEEAKALVK 804



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           ++   M          G  ++L VHDE+V E P+        L   +M
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 197/619 (31%), Gaps = 105/619 (16%)

Query: 1   MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +  +  D ET    PL           A +   A++W+          E      +L+
Sbjct: 370 MKQTSVCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPEDQDQAQELI 419

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + LR    DE +  +  N  ++  + +K     I    +  T +               L
Sbjct: 420 EQLRPFFEDEKIEKIGQNLKYDIKVLRKY--NLIIKGAYFDTMLAHYLINPDMRHNMDVL 477

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A  +  +         LI +  K  +        +           EY   D + T +L 
Sbjct: 478 AETYLNYTPI--SITELIGKKGKNQLSMRQVPIEKQT---------EYAVEDADITYQLA 526

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P           +D E  L  +   +   G  +D+D +  L E +  + K L+  I
Sbjct: 527 SHFKPELKDAKTEELFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETSI 586

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +        +     L   LF    +        T +   +   ++ LA+D  + +   
Sbjct: 587 YEAAGEEFNIA-SPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKNIL 645

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + V    GR+         + TGR S      QN+P +     
Sbjct: 646 EYRGLAKLKSTYIDALPDQVEESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER-- 702

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    VR   +       L+ AD + IE R++A ++ E  
Sbjct: 703 ----------------------GRQVRKAFVPRDENYTLLAADYSQIELRIIAALSDETT 740

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I+AF NGEDI+ +T +K FN P+D+V++EQR+  K +   + Y     G +        
Sbjct: 741 MIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRG 800

Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492
                +  + +       +                        +   S +  ++      
Sbjct: 801 ESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRRRYLKDINSRNAVVRSAAERN 860

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           AV   + G+A +++K A    H+ +         G     +    +    V +  +  + 
Sbjct: 861 AVNAPIQGSAADIIKIAMINIHKKLT--------GGNFKTKMLLQVHDELVFDAHKTELE 912

Query: 553 RHKRDVHIVLPSSRRLVYS 571
             +  +   + ++  L   
Sbjct: 913 EVRALIKTEMENAYSLAVP 931


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 98/524 (18%), Positives = 176/524 (33%), Gaps = 77/524 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L A    D  +      E + +   L   L  E V+    +  F  +L  +   I + + 
Sbjct: 458 LFASGLADGQI------EAAKVLETLTALLESEAVLKTGFDIKFAAVLLAQH-NITLRTV 510

Query: 92  RWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             +     A   G  S     L    L      H   +  G+  I+        +  Y  
Sbjct: 511 DDVQLMSYALDAGRSSHDIEALAEQWLGHEMIAHADIVGSGRNRISLDQVEIPRAAEYGA 570

Query: 148 TRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A+  ++ W +F        E    +++ L      ER L  +   +  RG  ID  ++
Sbjct: 571 ESADVIMRLWLVFKARLIS--ERMNNVYESL------ERPLIDVLARMERRGIMIDRQVL 622

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L    AQ   +L+ +I ++    I +      L   +F   G+     ++ T     +
Sbjct: 623 ARLSGEFAQSAARLEAEIREIAGEDI-NPGSPKQLGDVMFGKMGLPGGQKTK-TGAWSTT 680

Query: 267 HSNITQLAK------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            S +  LA+        IL+    S       + L   +    +   T     A+ TGR 
Sbjct: 681 ASILEDLAEAGHDFPRKILDWRQVSKLKSTYTDALPTHLLPQTQRVHTTYALAATTTGRL 740

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +                              +R   IA+ G KLV AD
Sbjct: 741 SSNEPNLQNIPVRTED------------------------GRKIRRAFIAAKGHKLVSAD 776

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA IA      +AF +G DI+  T ++ F  PI  +  E R   K +   + 
Sbjct: 777 YSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAINFGII 836

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------W 475
           Y     G A          G  ++++ +       + D                     +
Sbjct: 837 YGISAFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHY 896

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              ++ +  ++      A+  +L GTA +++++A       + Q
Sbjct: 897 PDIKASNPSLRAFNERAAINARLQGTAADIIRRAMIRMEDALTQ 940



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655
           Q  + DI+   M               ++L VHDE+V E PD+    ++  +  +M + P
Sbjct: 920 QGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDKTLPVIREVMEQAP 979

Query: 656 SWAKGL--PLKAE 666
             A  L  PL+ +
Sbjct: 980 FPATALSVPLRVD 992


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 90/586 (15%), Positives = 182/586 (31%), Gaps = 106/586 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSDLLQY--- 60
            ID ET S   +           A +   +++ ++           +      +  +   
Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFKPL 400

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             ++ ++ +  N  ++  +     G+ +  K  +  +++A     P        +A    
Sbjct: 401 YENDNILKIGQNIKYDYEVLNNY-GVTLQGK--MFDTMIAHYLIQPELHHNMDYMAETLL 457

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            + T   E   LI    K   +      T            EY   D + T  L   L P
Sbjct: 458 GYRTIHIE--ELIGPKGKKQKNMRDLSPTDI---------CEYAAEDADITLRLKHLLEP 506

Query: 180 LS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  L  +   +   G  +D + + +   +     K+ +++I K   
Sbjct: 507 RLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      +   LF    I        T + + S   +  L     + R   +   +
Sbjct: 567 ETF-NIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYRGM 625

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     + L + ++   G +  +      + TGR S      QN+P +          
Sbjct: 626 KKLLSTYIDALPKLINPRTGHIHTSFN-QAQTATGRLSSSDPNLQNIPVRTDD------- 677

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R C I  +G     AD + IE R++A ++G++  ++AF 
Sbjct: 678 -----------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFR 720

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            G DI+  T AK ++  IDKV+  QR   K     + Y     G A+            +
Sbjct: 721 EGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGEARELI 780

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
           Q +         + +                          S +  ++      A+   +
Sbjct: 781 QDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAINAPI 840

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
            GT  +++K A             + + +LQ+  +L        +E
Sbjct: 841 QGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 104/577 (18%), Positives = 204/577 (35%), Gaps = 84/577 (14%)

Query: 5   FIDIETRS-PQPLPK-VGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +D ET S    L + VGV     A +A      + +   P +L    +   +   L   
Sbjct: 352 AVDTETTSLDYRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQL----DAQFVLDILKPI 407

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLALNF 118
           L +  +  +  +  ++  +F       I    W   ++LA     P++       LA  +
Sbjct: 408 LENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMDDLAQYY 464

Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             + T   E   GK      F +  ++   PY    A+    W+L+  + K   +  R  
Sbjct: 465 LNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADIT--WRLYEHFSKELAKIPR-- 520

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +RL  L D E     +   + + G R+D+  + +L +    +   L+   ++L      
Sbjct: 521 LERL--LLDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELAGQPF- 577

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L   LF   GI     +      T ++IL   +   +A   IL   + S    
Sbjct: 578 NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHPIIAT--ILEYRSLSKLKS 635

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
              ++L        +   T      + TGR S      QN+P +                
Sbjct: 636 TYTDSLIAQSDPATQRVHTSYHQAIAATGRLSSTDPNLQNIPIR---------------- 679

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                   G     +R   IA  G+ ++ AD + IE R++A  + ++  +KAF +G DI+
Sbjct: 680 --------GEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIH 731

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKTMASHC 455
             T A+     ++ V+ +QR   K +   L Y                 A+ + T+    
Sbjct: 732 QATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLNLSRAEAQEYITLYFSR 791

Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
              +  + +N ++ +  + +           E   + +  ++      A+   L G+A +
Sbjct: 792 YPSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAAD 851

Query: 505 LVKKAWRAKHQGVLQLWK----DLTEGFACVVQEGGS 537
           ++K A  +  Q + +        + +     V E  +
Sbjct: 852 IIKLAMISVDQSLPKEHAKMLLQVHDELVFEVDEDKA 888



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KN 620
            RRL   +++   + +  A     R            +Q  + DI+   M +      K 
Sbjct: 817 GRRLYMENIRAGNAMVRQAA---ERAAINAP------LQGSAADIIKLAMISVDQSLPKE 867

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
              ++L VHDE+V E  +     V   L  LM
Sbjct: 868 HAKMLLQVHDELVFEVDEDKADEVTALLKKLM 899


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 98/592 (16%), Positives = 190/592 (32%), Gaps = 110/592 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57
             L +D ET S   +          QA +   ++A +++    V +  DR E     +  
Sbjct: 348 KVLSLDTETTSTDTM----------QAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACL 114
                +E ++ V  N  ++  +  +  GIDI  K  +  +++A       L  ++     
Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY-GIDIKGK--MFDTMIAHYLIQPELHHNMDYMAE 454

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L        ++E      +  K   D  P D              EY   D + T +L+
Sbjct: 455 TL-LGYKTVHIDELIGAKGKHQKNMRDLSPTDI------------YEYASEDADITLQLY 501

Query: 175 KRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           K L P              E  L  +   +   G  +D D + +  ++      + +  I
Sbjct: 502 KVLEPKLKEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +       +      +   LF    I        T + + S   +  L     +     
Sbjct: 562 YEQASEKF-NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNIL 620

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               I KL     + L + ++   G +  +      + TGR S      QN+P +     
Sbjct: 621 KYRGIKKLLSTYIDALPKLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD-- 677

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I         AD + IE R++A ++ ++  
Sbjct: 678 ----------------------GKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           ++AF +G DI+  T AK ++ P+++VS  QR   K     + Y     G A+        
Sbjct: 716 MEAFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGE 775

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               ++ + +   S   F +                          S +  ++      A
Sbjct: 776 AKELIEGYFKTFPSVKAFMEKAKQTAREKGYAETLFNRRRYLSDINSKNGTVRGFAERNA 835

Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535
           +   + GT  +++K A             + + +LQ+  +L        +E 
Sbjct: 836 INAPIQGTEADIIKVAMIRIWERFRRENIRSKMILQVHDELNFSVFPEEKEK 887


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 85/559 (15%), Positives = 174/559 (31%), Gaps = 97/559 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113
                   +  +  +  N  F+ ++       D+     +  ++LA       +      
Sbjct: 402 QQFKPVFENPAIGKIGQNLKFDILVLS---WYDVKVAGELFDTMLAHYLIDPETRHGMDV 458

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L+ N+  +         LI    KG ++    D    +          Y   D + T +L
Sbjct: 459 LSENYLGYTP--VSITTLIGPKGKGQLNMRDVDPKTVSD---------YAAEDADITLQL 507

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            +   P+           + E  L  +   +   G RID+  +      I  E + L+  
Sbjct: 508 KEIFEPMLIKVEADKLAHEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEAR 567

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI------TQLAKDL 277
           I +        +     L   LF    +D       T +       +      + + +D+
Sbjct: 568 IYEKAGVPFNIA-SPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLMALANKSDIVQDI 626

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +  R      +   ++ L + ++   GR+  +      + TGR S      QN+P +   
Sbjct: 627 LEYRQLQKLRST-YVDALPQLINTKTGRVHTSYN-QAVAATGRLSSNNPNLQNIPIRTER 684

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395
                                      VR   IA +    ++ AD + IE R++A I+ +
Sbjct: 685 ------------------------GREVRKAFIARDDEHVILSADYSQIELRLIAEISKD 720

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTM 451
              + AFA G DI+  T AK +   +++V+  QR   K +   + Y   A    +     
Sbjct: 721 ANMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKAVNFGIIYGQSAFGLSQSLGIP 780

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
                  ++Q+         + +   A +                      +  ++    
Sbjct: 781 RREAADMIEQYFIQYPGIRDYMNNTIAFAKEHGYVETLLKRRRYLRDINSANATVRGFAE 840

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLW------KDLTEGFACVVQEGGSISARRVA 544
             A+   + G+A +L+K A    HQ + Q          + +     V      + + + 
Sbjct: 841 RNAINAPIQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHDELVFDVPRNEVAAFKEII 900

Query: 545 NVPRLVMRRHKRDVHIVLP 563
                   R K  +   +P
Sbjct: 901 E------ARMKGALKTEVP 913


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 106/643 (16%), Positives = 204/643 (31%), Gaps = 127/643 (19%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D  +       L   L  +    V  N+ F+R++F +  GI +    +  T +       
Sbjct: 409 DNLDLETALEGLRPILESDVYPKVLQNAKFDRLVF-QFQGIQLQGVVF-DTMLANYVLNP 466

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             S     L+ N+ +   K            K          T+           EYC  
Sbjct: 467 ERSHNLTDLSRNYLQITAKS------YKELVKKGQTIADLSITQV---------AEYCGL 511

Query: 166 DVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           DV  T +L ++L      IP       + E  L  +   +   G RID + +  L   + 
Sbjct: 512 DVFTTYQLREKLEAELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLE 571

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
            + ++L+    +L    I +      L   LF    +D+    +  L      + + +L 
Sbjct: 572 ADLQRLEAGAYELAGE-IFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQ 630

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQ 328
            D  +  +      + KL     + L   V  D  R+         + TGR S      Q
Sbjct: 631 GDHPIIDVLLEYRTLAKLKSTYVDALPMLVRDDTHRIHTDFN-QAVTATGRLSSSNPNLQ 689

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                           S  +R+  I  +   L+ AD + IE R+
Sbjct: 690 NIPIRT------------------------EFSRQIRAAFIPESSWILMAADYSQIELRI 725

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++ E   ++A+ NG+D++  T         D+++ E+R + K++   + Y  G    
Sbjct: 726 LAHLSQEPRLLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMG---P 780

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
              A   G+   +    ++    ++ + +  ++   M+ +       + ++G        
Sbjct: 781 HRFAREAGVKYSEAKDFIQ--RFYDRYPEVFAYLQRMEREAVSQGYVETILGR------- 831

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                                                  R       R +      +   
Sbjct: 832 ---------------------------------------RRYFEFDSRGLKKYRGKALE- 851

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD----I 624
             ++V      +++    L+R            +Q  S D++   M             +
Sbjct: 852 ELAEVDLSDIKMSSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRL 905

Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666
           ++ VHDE+V E P      V   + + M         +PL AE
Sbjct: 906 LMQVHDELVLEVPVDEVDDVRSQIKTTMETALP--LSIPLVAE 946


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 92/598 (15%), Positives = 185/598 (30%), Gaps = 122/598 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D ET S   +           A +    +A ++            A+P+D  + L
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391

Query: 62  ----------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
                      D +++ +  N  ++  + K   G+ +  K  +  ++LA       L  +
Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLKNY-GVTLGGK--MFDTMLAHYVIQPELHHN 448

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           +      L   + +   E    LI    K        D              EY   D +
Sbjct: 449 MDYMAETLLHYKTIHIDE----LIGPRGKHQKSMRDLDPKDV---------YEYAAEDAD 495

Query: 169 ATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T +L   L P            + E  L  +   +   G R+D D +     +  +   
Sbjct: 496 ITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMN 555

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L++ I +       +      +   LF    I        T + + S   +  L     
Sbjct: 556 RLEQQIYEKAGETF-NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHP 614

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +         + KL       L + ++   G +  +      + TGR S      QN+P 
Sbjct: 615 IVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIPV 673

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +                              +R C +         AD + IE R++A +
Sbjct: 674 RSED------------------------GKEIRKCFVPEQDCMFFSADYSQIELRIMAHL 709

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           +G++  I+AF  G DI+  T AK ++  I  V+ E+R   K     + Y     G A+  
Sbjct: 710 SGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRM 769

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487
           +         ++ +         + +  + E+                      +  ++ 
Sbjct: 770 EIDNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRG 829

Query: 488 QYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535
                A+   + G+  +++K A             + + +LQ+  +L        +E 
Sbjct: 830 FAERNAINAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPDEKER 887


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 92/585 (15%), Positives = 182/585 (31%), Gaps = 102/585 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET   +P+    V      A     AY     PV   +R E   + ++      +
Sbjct: 381 LSIDTETTGTEPMDAELVGMSFSDAENR--AYYV---PVP-AEREEVLKIVNEFRPLFEN 434

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSE 120
           E  M V  N  ++ I+ +   G+ +  K  +  ++LA     P    ++          +
Sbjct: 435 EKSMKVGQNIKYDMIILQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEIYLHYQ 491

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            +   +    LI    K   +                    Y   D + T +L   L   
Sbjct: 492 TIHIDK----LIGARGKNQKNMRDLSPEDV---------YRYACEDADVTLKLKNVLEKE 538

Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      + E  L  +   I   G  +D + + +  +      ++++++I ++   
Sbjct: 539 LKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGE 598

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +   LF    I        T + + S   +        +         + 
Sbjct: 599 TF-NISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLK 657

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + ++   GR+  +      + TGR S      QN+P +           
Sbjct: 658 KLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR----------- 705

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   I   G +   AD + IE R++A ++ +   I+AF +
Sbjct: 706 -------------DEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLS 752

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G DI+  T AK +   I+ V+ + R   K     + Y     G A+            + 
Sbjct: 753 GHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQEAKELID 812

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + D                          S +  ++      A+   + 
Sbjct: 813 GYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDINSRNGVVRGYAERNAINAPIQ 872

Query: 500 GTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
           G+A +++K A    +Q           +LQ+  +L        +E
Sbjct: 873 GSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKE 917


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 92/529 (17%), Positives = 171/529 (32%), Gaps = 86/529 (16%)

Query: 49  EQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               MP  L           +L       V  +  ++  +     GI++       T + 
Sbjct: 381 RGPDMPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLE 438

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAW 156
           +       +     LAL        K E+  GK            +   +    +     
Sbjct: 439 SYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITL 498

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QL      + +     L +      + E  + L+ + +   G  ID   +      IA  
Sbjct: 499 QLHCALYPQ-IAREPGLERVYR---EIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMR 554

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L+     L  G   +      +    F    + +V  +     S      + +LA+D
Sbjct: 555 LVDLEAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAED 612

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L +L      + KL     + L   V+   GR+         + TGR +      QN+
Sbjct: 613 YPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTGRLASNDPNLQNI 671

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   IA+ G ++V AD + IE R++A
Sbjct: 672 PVRT------------------------AEGRRIREAFIAAPGHRIVSADYSQIELRIMA 707

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446
            I+G+   ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L Y       A 
Sbjct: 708 HISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLAS 767

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM---------- 485
                     L + ++       + + +  +A +             LW+          
Sbjct: 768 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRASAKERGYVETVFGRRLWLPEINGGNGPR 827

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           +      A+   + GTA +L+K +  A            + ++Q+  +L
Sbjct: 828 RQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 876


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 101/566 (17%), Positives = 183/566 (32%), Gaps = 110/566 (19%)

Query: 46  DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR 101
           D  EQ  +   L +    L       V  +  ++  +       DI        T + + 
Sbjct: 384 DMPEQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESY 440

Query: 102 TNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQ 157
                 +     LAL        K E+  GK      F + ++                 
Sbjct: 441 VVESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----- 495

Query: 158 LFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLV 206
                       T +L   L P             + E  + L+ + +   G  ID   +
Sbjct: 496 -----------ITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARL 544

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
                 IA    +L+ +  +L  G   +      +    F    + +V  +     S   
Sbjct: 545 HAQSTEIATRLIELEGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-D 602

Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRW 320
              + +LA+D  L +L      + KL     + L   V+   GR+         + TGR 
Sbjct: 603 EEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYA-QAVAVTGRL 661

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P +                              +R   IAS G ++V AD
Sbjct: 662 ASNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSAD 697

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L 
Sbjct: 698 YSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLI 757

Query: 441 YQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM 485
           Y       A           L + ++       + + +  +A +             LW+
Sbjct: 758 YGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL 817

Query: 486 ----------QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWK--- 522
                     +      A+   + GTA +L+K +           R   + ++Q+     
Sbjct: 818 PEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELV 877

Query: 523 -DLTEGFACVVQEGGSISARRVANVP 547
            ++ EG   +V+E        VA + 
Sbjct: 878 LEVPEGELSLVREKLPEMMCGVAKLK 903


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 89/505 (17%), Positives = 176/505 (34%), Gaps = 80/505 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++   E V  VAHN  F+  + ++        K  +  +++A     P         +
Sbjct: 426 FREFFEKEDVSKVAHNLKFDYKILQQY---GFSLKGLLFDTMIAHYLLNPDGKH----VI 478

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           ++   +    +  AL +   K   +   +           +    Y   D + T +L++ 
Sbjct: 479 DYLSEIYLNYKPVALESLIGKKGKNQLTFRSLTV------EEQTNYAAEDADITWQLYEV 532

Query: 177 LIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             P              E  L  +   +   G  +D   + +    +  + + L+  I +
Sbjct: 533 FAPQLKKENLEDLFYKVEMPLLRVLAKMELEGVALDEKWLAQESIDLENDLRGLEAKIFE 592

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L D    +      L   LF    +D       T +   S   + +L+    + +     
Sbjct: 593 LADVEF-NVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQKLSAKHDIIKYILEY 651

Query: 287 SAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               KL     + L   +  D  R+  +     A+ TGR +      QN+P +       
Sbjct: 652 RTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAA-TGRLASVNPNLQNIPIRTLR---- 706

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A+ GKK++ AD + IE R++A I+ E+  I 
Sbjct: 707 --------------------GQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMIL 746

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCG 456
           AF NGEDI+V+T A+ F+ P+++V+K QR   K +   + Y  GA           +   
Sbjct: 747 AFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQGAFALAEQTGLSRTEAK 806

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495
             ++ + +N      +   +  ++  L                      ++      AV 
Sbjct: 807 QMIESYFENYPRLKKYMGEQVQKAQELGYVETILNRKRHLKDINSANFVVKAHAERNAVN 866

Query: 496 DKLIGTACELVKKAWRAKHQGVLQL 520
             + G+A +++K A     Q + +L
Sbjct: 867 APIQGSAADVIKLAMIKIDQKLSEL 891


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 91/585 (15%), Positives = 187/585 (31%), Gaps = 104/585 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYL 61
            +D ET S   +           A +   +++ ++     V +    +++     + + L
Sbjct: 351 SLDTETTSTDAI----------SAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKPL 400

Query: 62  -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +E ++ +  N  ++  +     G+ +  K  +  +++A     P    N       +E
Sbjct: 401 YENEQILKIGQNIKYDYEVLSHY-GVTLQGK--MFDTMIAHYLIQPELHHNMD---YMAE 454

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            L              KG       D +  +         EY   D + T  L   L P 
Sbjct: 455 TLLGYRTIHIEELLGPKGKKQRNMRDLSPTDI-------YEYAAEDADITLRLKHVLEPH 507

Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      + E  L  +   +   G  +D + + +   +     K+ +++I K    
Sbjct: 508 LKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAGE 567

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +   LF    I        T + + S   +  L     + R   +   + 
Sbjct: 568 TF-NIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYRGMK 626

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + ++   G +  +      + TGR S      QN+P +           
Sbjct: 627 KLLSTYIDALPKLINPRTGHIHTSFN-QAQTSTGRLSSSDPNLQNIPVRTDD-------- 677

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R C I  +G     AD + IE R++A ++G++  ++AF  
Sbjct: 678 ----------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFRE 721

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G DI+  T AK ++  I+KV+  QR   K     + Y     G A+      S     +Q
Sbjct: 722 GHDIHRATAAKIWHEDIEKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNSEARELIQ 781

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            +         + +                          S +  ++      A+   + 
Sbjct: 782 DYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAINAPIQ 841

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           GT  +++K A             + + +LQ+  +L        +E
Sbjct: 842 GTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 91/609 (14%), Positives = 192/609 (31%), Gaps = 97/609 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
            ++ +D ET         G+   A  A +   ++A+           +           L
Sbjct: 358 KEVSMDTET--------TGLD--ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVL 407

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L +E +  +  N  ++ I+ K   GI++  + +  T +        +      L+ N
Sbjct: 408 RPLLENENIRKIGQNLKYDYIILK-WYGIELKGE-FFDTMLAHYLLDPDTRHNMDVLSEN 465

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +  +         LI +  K  ++    D  +            Y   D + T +L +  
Sbjct: 466 YLGYTPI--SITELIGK-GKNQLNMRDIDVAKVTD---------YAAEDADVTLQLQQVF 513

Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            P+           + E  L  +   +   G +ID++ +++    +  +  KL+  I   
Sbjct: 514 EPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTIYHK 573

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  +     L   LF    +D       T +       +  LA    + +      
Sbjct: 574 AGHRFNIA-SPKQLGEILFDKLQLDPKAKKTKTGQYQTGEDVLLALANKSDIVKDILDFR 632

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   ++   GR+  +      + TGR S      QN+P +        
Sbjct: 633 QLQKLKSTYVDALPLMINKKTGRVHTSYN-QAVAATGRLSSNNPNLQNIPIRTEK----- 686

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 VR   I       L+ AD + IE R++A I+ ++  + 
Sbjct: 687 -------------------GREVRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMD 727

Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
           AF+ G DI+  T AK +    ++ V+ +QR   K +   + Y   A    +         
Sbjct: 728 AFSKGLDIHTATAAKVYGVANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEA 787

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              ++ + +  K    +       +                      +  ++      A+
Sbjct: 788 AEIIENYFEQYKGIKNYMSDTMNFARENGYVETIMGRRRYLRDINSANATVRGFAERNAI 847

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              + G+A +++K A    H+ ++              +    +       V  ++M R 
Sbjct: 848 NAPIQGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDELVFDVLVTEKDIVKEIIMDRM 907

Query: 555 KRDVHIVLP 563
           K  +   +P
Sbjct: 908 KNAIKTTVP 916


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 91/525 (17%), Positives = 175/525 (33%), Gaps = 77/525 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +L+ L    +    H+      L  + L   +    ++  + +A     P+        L
Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDGSYELEKL 426

Query: 117 N---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
               F++   K ++       F   +  +       ++      L      R       +
Sbjct: 427 GITYFNQEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPRL--EELGM 484

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +      D E  L  +   +   G  +D   + +  +++ +       +I +L      
Sbjct: 485 HQLYY---DIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELAGETF- 540

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +   T  L   LF   G+  V  ++    T   +L          D IL     +     
Sbjct: 541 NINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQYTKLKST 600

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++ L + ++ DGR+  + Q    + TGR S      QN+P +                 
Sbjct: 601 YVDGLGKVIAPDGRIHTSFQN-TVTATGRLSSTEPNLQNIPVRT---------------- 643

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +A  GK LV AD + IE R+LA IAG++  I+AF  GEDI+ 
Sbjct: 644 --------ELGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGEDIHT 695

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466
            T A+ F  P+D+V+K  R+  K +   + Y   A    +            ++++    
Sbjct: 696 VTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQDIGVPTYEAKEYIEKYFARF 755

Query: 467 KSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                +                         + +S +   +      A+   + GTA ++
Sbjct: 756 SGVHAYMTDVVNRAKTDGYVSTLFGRRRWLPELKSSNFNTRSFGERVALNMPIQGTAADI 815

Query: 506 VKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISA 540
           +K A    H            +LQ+  +L     C  +E  ++ A
Sbjct: 816 MKLAMLHVHSRLREEGLQARLILQVHDEL--IVECPEEEAETVKA 858



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642
            R++G ++  N+ +Q  + DI+   M        + G    ++L VHDE++ E P+    
Sbjct: 795 TRSFGERVALNMPIQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELIVECPEEEAE 854

Query: 643 SVGTL 647
           +V  L
Sbjct: 855 TVKAL 859


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 83/562 (14%), Positives = 160/562 (28%), Gaps = 98/562 (17%)

Query: 36  AWDDEPVKLWDRTEQS--AMPSDLLQ-----YLRDETVMCVAHNSLFERILFKKTLGIDI 88
           A D+               +P+D+++      L  + V  V  N  F+  + ++      
Sbjct: 351 AVDEGRACYVPLAAPDVRPLPADVVREVLTPLLASQKVSKVGQNLKFDYHVLRRWGVRPE 410

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                   +     +       +              ++     A F    +        
Sbjct: 411 GPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV-------- 462

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRG 198
                      G Y   D +    L + L    +           E  L  +   + + G
Sbjct: 463 --------AEAGVYAAEDADIALRLSRVLKERLEAGDLGRVFYEMEMPLLSILARMEEWG 514

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D + +      + +    ++ +I  L      +   T  L+  LF+  G+  V  ++
Sbjct: 515 IGLDGEALSAFGRELDERISNIENEIFDLVGHEF-NVGSTKQLQEVLFVERGLPPVKKTK 573

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314
               T  S+L            +L   + +      ++ L   V+   GRL       G 
Sbjct: 574 TGFSTDTSVLEELAAQDPVAAKVLEYRSLTKLKNTYVDVLPGLVNPETGRLHTWFSQVG- 632

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +                              +R   +   G 
Sbjct: 633 TATGRLSSKDPNLQNIPIKT------------------------EEGRRIREAFVPQRGW 668

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             + AD + IE  +LA ++G+    +AF  GED++  T +  F  P + V+ EQR I K 
Sbjct: 669 WFLSADYSQIELVILAHLSGDPALCRAFREGEDVHRATGSLLFGVPPETVTPEQRRIAKT 728

Query: 435 MELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-- 488
           +   + Y   A    +            +  +         F +   AE+          
Sbjct: 729 INFGVIYGMSAFRLSRELGIPRKEAERFINAYFTTYAGVRAFIERTIAEAEEKGYVTTLF 788

Query: 489 -------------------YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQ 519
                                  AV   + G+  +++K A               + +LQ
Sbjct: 789 GRKRPLPYITSRNKTQKTGAERIAVNTPIQGSGADIIKLAMIDLDAQMRRMGLASRMILQ 848

Query: 520 LWKDLTEGFACVVQEGGSISAR 541
           +  +L         E      R
Sbjct: 849 VHDELIFEVPPEELEVMKRLVR 870


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            LA        L      L   E +     +   L+A     +  +P     R       
Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398

Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
             F E        +  LF+ L P           + ER L  +   +  RG R+D+ L+ 
Sbjct: 399 -EFTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L   + +E ++L+ ++ +L      +      L   LF   G+  V  +E T K   + 
Sbjct: 458 ALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLEKVLFDELGLTPVGRTEKTGKRSTAQ 516

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             +  L     +  L      + KL     + L   V    GRL        A+ TGR S
Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   +A  G  L+ AD 
Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671

Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484
              A    +            ++++ Q+      + +    E                  
Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731

Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532
                   +++     A    + GTA +L+K A       +      L   + +     V
Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791

Query: 533 QEGGSISARRVAN 545
            E  +  A+ +  
Sbjct: 792 PEDRAEEAKALVK 804



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           ++   M          G  ++L VHDE+V E P+        L   +M
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807


>gi|307692866|ref|ZP_07635103.1| DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 93/503 (18%), Positives = 169/503 (33%), Gaps = 76/503 (15%)

Query: 56  DLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            +LQ L    +  V H +   E+ L  +     I  +     + LA     P+       
Sbjct: 376 QVLQALFAPDIQKVVHGAKELEKELMDQG----IEPQGIRFDTELAAYLLSPTDGSYDLE 431

Query: 115 ALN---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L    +++   K +E          G+ DS     +          F  +C   ++A  
Sbjct: 432 KLGITYYNQEFAKAKE------YLTPGAFDSLFSLDSEGQSAGPMGAFLSHCAL-IDALY 484

Query: 172 E-LFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           E L +RL  L       + E  L  +   +   G  +D   +    E +AQ  +K    I
Sbjct: 485 ETLSQRLEELKLTQLYGEIELPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALI 544

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +L      +   T  L   LF   G+  V  ++    T   +L          + IL+ 
Sbjct: 545 YELAGEEF-NINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGKHPIIEAILDY 603

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              +       + L + ++ DGR+    Q    + TGR S      QN+P +        
Sbjct: 604 RQLTKLKSTYADGLGKVIAPDGRIHTCFQN-TVTATGRLSSTEPNLQNIPIRT------- 655

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A+ GK LV AD + IE R+LA +AG+   I+ 
Sbjct: 656 -----------------QLGAQLREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEG 698

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457
           F +G DI+  T ++ F    D+V+ + R   K +   + Y        +           
Sbjct: 699 FHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIVYGISPFSLSQDIGVSVQQAKE 758

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            + ++  +      + D                       + +S +   +      A+  
Sbjct: 759 YMDKYFAHYSGVRAYMDGVVEQGKQDGYVATLFGRRRWLPELKSSNFNTRSFGERVALNM 818

Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519
            + GTA +++K A       +L+
Sbjct: 819 PIQGTAADIIKLAMIRVRDRLLR 841



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642
            R++G ++  N+ +Q  + DI+   M               +VL VHDE++ E P+    
Sbjct: 807 TRSFGERVALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELIVECPEAEAE 866

Query: 643 SVGTLCS 649
           +V  L  
Sbjct: 867 TVCRLVK 873


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 156/456 (34%), Gaps = 80/456 (17%)

Query: 151 NHVQAWQLFG---EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           +    W           R +EA            + E  L  +   +   G  ID   + 
Sbjct: 433 DTPDLWATRASVLPELHRRMEAELAAQGVDRLYREVELPLMPILAEMEAVGVGIDPAALH 492

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++   + +   ++ ++I +L      +      L   LF   G+     ++         
Sbjct: 493 EMSVELERRILQVSQEIYELAGMQF-NISSPKQLGDVLFGKLGLPSGKKTKSG-GYSTDA 550

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA    +         + KL     + L + ++ DGR+  T      + TGR S 
Sbjct: 551 EVLEELAAAYPIAARVLDYRTLTKLKGTYVDALGQLIARDGRIHTTFA-QTVAETGRLSS 609

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +                              +R   +A  G  L+ AD +
Sbjct: 610 KDPNLQNIPIR------------------------IEEGRRIRKAFVARPGCVLLSADYS 645

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RV+A  +G+    +AF + +DI+  T A+ F  P+D+V+ E R   K +   L Y 
Sbjct: 646 QIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYG 705

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------- 482
               G A+      +     ++ +         + + ++AE+                  
Sbjct: 706 QTDFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDGRRRPLPE 765

Query: 483 -----LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEG 527
                  ++      A+   + GTA +L+K+A  A  +           +LQ+  +L   
Sbjct: 766 INHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDEL--V 823

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           F C V E        V  + RLV R  +  + + +P
Sbjct: 824 FECPVGE--------VDRLARLVRREMEGAMKLDVP 851



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 11/194 (5%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
            ++  + F          L  QD +   A   ++ G   + V    R + + V       
Sbjct: 648 ELRVVAHFSGDPALREAFLHDQDIHTRTA--AEVFGVPMDQVTPEMRRQAKAVNFGLIYG 705

Query: 525 TEGFACVVQEGGS-ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNT 582
              F      G S   AR             +R +      +R   Y     G    L  
Sbjct: 706 QTDFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDGRRRPLPE 765

Query: 583 ATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
              ++   R    ++  N  +Q  + D++   M    +          ++L VHDE+V E
Sbjct: 766 INHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDELVFE 825

Query: 636 TPDTPYFSVGTLCS 649
            P      +  L  
Sbjct: 826 CPVGEVDRLARLVR 839


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 92/597 (15%), Positives = 184/597 (30%), Gaps = 120/597 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D ET S   +           A +    +A ++            A+P+D  + L
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391

Query: 62  ----------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
                      D +++ +  N  ++  + K   G+ +  K  +  ++LA     P    N
Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLKNY-GVTLGGK--MFDTMLAHYVIQPELHHN 448

Query: 112 ACLALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                  +E L   +      LI    K        D              EY   D + 
Sbjct: 449 MD---YMAETLLHYKTIHIDELIGPRGKHQKSMRDLDPKDV---------YEYAAEDADI 496

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T +L   L P            + E  L  +   +   G R+D D +     +  +   +
Sbjct: 497 TLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNR 556

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++ I +       +      +   LF    I        T + + +   +  L     +
Sbjct: 557 LEQQIYEKAGETF-NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPI 615

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                    + KL       L + ++   G +  +      + TGR S      QN+P +
Sbjct: 616 VADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVR 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R C +         AD + IE R++A ++
Sbjct: 675 SED------------------------GKEIRKCFVPEQDCMFFSADYSQIELRIMAHLS 710

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           G++  I+AF  G DI+  T AK ++  I  V+ E+R   K     + Y     G A+  +
Sbjct: 711 GDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRME 770

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQ 488
                    ++ +         + +  + E+                      +  ++  
Sbjct: 771 IDNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGF 830

Query: 489 YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535
               A+   + G+  +++K A             + + +LQ+  +L        +E 
Sbjct: 831 AERNAINAPIQGSEADIIKIAMIRIWQRFRAENIRSKMILQVHDELNFSVYPDEKER 887


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/536 (15%), Positives = 178/536 (33%), Gaps = 83/536 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L D+ V+ + +N  +  ++ K+   I       I     A   G  +  ++     
Sbjct: 442 LKPILEDQAVLKIGYNMKYNWLIMKQYA-IVTQPFDDIMLISYALDAGTSTHNRDILSER 500

Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATR 171
                    ++       I  F +  +    +         ++ WQ+         +   
Sbjct: 501 WLKHKPIAYKDLTHNGKKITSFAQVDLKQATFYAAEGADITLRLWQVLKPQLV--AQGVT 558

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           ++++RL      +R L  +   + +RG  +D  ++ +L   +AQ    L+E+I +L    
Sbjct: 559 KIYERL------DRPLIEVLAKMEERGILVDRQILSRLSCELAQAALSLEEEIYQLVGER 612

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290
              +     L   LF   G+     ++   +   S   + +LA +   L R       + 
Sbjct: 613 FNIA-SPKQLSDILFGKMGLPGGVKTKNG-QWSTSAQILEELAAEGHTLPRKIVDWRQLT 670

Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   +    GR+         + TGR S      QN+P +           
Sbjct: 671 KLKSTYTDALPYYILPETGRVHTNYSLAT-TSTGRLSSSEPNLQNIPIRT---------- 719

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R+  IA  G  L+ AD + IE R+LA IA      +AFA 
Sbjct: 720 --------------PEGRKIRTAFIAPKGCVLLSADYSQIELRILAHIANITALKEAFAQ 765

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            +DI+  T ++ F   ++ +  + R   K +   + Y     G A       +     + 
Sbjct: 766 DQDIHAITASQIFGVAVEGMPSDIRRRAKAINFGIIYGISAFGLANQLSISRNEASRYID 825

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                     + + ++ +  ++      A+   + 
Sbjct: 826 IYFERFPGIKDYMETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNERAAINAPIQ 885

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           G+A +++++A               + +LQ+  +L         E   +   +V  
Sbjct: 886 GSAADIIRRAMIQMEGALKKEKLSAKMLLQVHDELIFEVPETESEKTKVLVTKVME 941



 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN--- 620
            RR+ Y ++K   S          + RT+  +   N  +Q  + DI+   M         
Sbjct: 856 GRRIHYPEIKATNS----------QIRTFNERAAINAPIQGSAADIIRRAMIQMEGALKK 905

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                 ++L VHDE++ E P+T       L 
Sbjct: 906 EKLSAKMLLQVHDELIFEVPETESEKTKVLV 936


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            LA        L      L   E +     +   L+A     +  +P     R       
Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398

Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
             F E        +  LF+ L P           + ER L  +   +  RG R+D+ L+ 
Sbjct: 399 -EFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L   + +E ++L+ ++ +L      +      L   LF   G+  V  +E T K   + 
Sbjct: 458 ALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQ 516

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             +  L     +  L      + KL     + L   V    GRL        A+ TGR S
Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   +A  G  L+ AD 
Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671

Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484
              A    +            ++++ Q+      + +    E                  
Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731

Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532
                   +++     A    + GTA +L+K A       +      L   + +     V
Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791

Query: 533 QEGGSISARRVAN 545
            E  +  A+ +  
Sbjct: 792 PEDRAEEAKALVK 804



 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           ++   M          G  ++L VHDE+V E P+        L   +M
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 101/566 (17%), Positives = 183/566 (32%), Gaps = 110/566 (19%)

Query: 46  DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR 101
           D  EQ  +   L +    L       V  +  ++  +       DI        T + + 
Sbjct: 381 DMPEQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESY 437

Query: 102 TNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQ 157
                 +     LAL        K E+  GK      F + ++                 
Sbjct: 438 VVESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----- 492

Query: 158 LFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLV 206
                       T +L   L P             + E  + L+ + +   G  ID   +
Sbjct: 493 -----------ITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARL 541

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
                 IA    +L+ +  +L  G   +      +    F    + +V  +     S   
Sbjct: 542 HAQSTEIATRLIELEGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-D 599

Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRW 320
              + +LA+D  L +L      + KL     + L   V+   GR+         + TGR 
Sbjct: 600 EEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYA-QAVAVTGRL 658

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P +                              +R   IAS G ++V AD
Sbjct: 659 ASNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSAD 694

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L 
Sbjct: 695 YSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLI 754

Query: 441 YQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM 485
           Y       A           L + ++       + + +  +A +             LW+
Sbjct: 755 YGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL 814

Query: 486 ----------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK--- 522
                     +      A+   + GTA +L+K +  A            + ++Q+     
Sbjct: 815 PEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELV 874

Query: 523 -DLTEGFACVVQEGGSISARRVANVP 547
            ++ EG   +V+E        VA + 
Sbjct: 875 LEVPEGELSLVREKLPEMMCGVAKLK 900


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/513 (18%), Positives = 165/513 (32%), Gaps = 91/513 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
             +     +  +    HN  ++  + +   + I       I  S +   +    SL+   
Sbjct: 373 EGVKPLFENSAIGFYGHNVKYDWHVLQNEGIQIQNICFDTILASYILNAHSRQHSLEVLA 432

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKRDVEA 169
           L                    F K +I          N +       +   EYC  DV+ 
Sbjct: 433 LE------------------YFGKVTIPISELIGKGKNVLSMRDVPIERVTEYCCEDVDF 474

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L + L                E  L ++   +  RG  +D+  + +L + + QE K 
Sbjct: 475 TCRLKEVLEKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQLSKELTQELKT 534

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSH-SNITQLAK 275
           L E I  +      +      +   LF+  GI     +     T   +L    N   LA 
Sbjct: 535 LQESIYTMAGEEF-NLNSPKQVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAG 593

Query: 276 DLILNRLASSGSAILKLNTLS-EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            ++  RL     +   ++ L  + +    R+  T     A+ TGR S      QN+P + 
Sbjct: 594 KILEYRLLEKLRST-YVDALPSQVIPRTHRIHSTFNQSVAA-TGRLSSQDPNLQNIPIRT 651

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393
                                        +R        G   + AD + IE R+LA ++
Sbjct: 652 ------------------------EEGRKIRGAFRPEKEGWSFLSADYSQIELRLLAHLS 687

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
            +   + AF N EDI+  T A  F  P+++VSKEQR   K +   + Y     G A+   
Sbjct: 688 QDPVLMAAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIYGQQAFGLARELG 747

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + Q       + D                       +  S ++ ++  
Sbjct: 748 IEVKQASKFITMYFQRYPKIKEYLDQSKENARATGKSVTLTGRERIIPEILSKNMQIRAA 807

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               AV   L GTA +L+K A     + + +  
Sbjct: 808 AERLAVNTPLQGTAADLIKMAMLKMDEEIEKQH 840


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            LA        L      L   E +     +   L+A     +  +P     R       
Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398

Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
             F E        +  LF+ L P           + ER L  +   +  RG R+D+ L+ 
Sbjct: 399 -EFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L   + +E ++L+ ++ +L      +      L   LF   G+  V  +E T K   + 
Sbjct: 458 ALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQ 516

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             +  L     +  L      + KL     + L   V    GRL        A+ TGR S
Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   +A  G  L+ AD 
Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671

Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484
              A    +            ++++ Q+      + +    E                  
Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731

Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532
                   +++     A    + GTA +L+K A       +      L   + +     V
Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791

Query: 533 QEGGSISARRVAN 545
            E  +  A+ +  
Sbjct: 792 PEDRAEEAKALVK 804



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           ++   M          G  ++L VHDE+V E P+        L   +M
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/535 (18%), Positives = 179/535 (33%), Gaps = 81/535 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L    +  V     F  +L  +  G+ + +         A   G  S   +A  
Sbjct: 499 DALKPVLESAGIAKVGFAIKFAAVLLAQH-GLTLRNIDDPQLMSYALDAGRGSHGLDALS 557

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-A 169
             N    L  + E    GK  I     G   +  Y   RA+   + +L      R V  +
Sbjct: 558 ESNLGHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERAD--VSLRLARVLKPRLVAGS 615

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +++ +I +L  
Sbjct: 616 MTAVYETL------ERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIRELAG 669

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288
             I +      L   LF   G+     ++ T     S   + +LA+      +       
Sbjct: 670 EDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHEFPKKILEWRQ 727

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KL     + L   V        T     A+ TGR S      QN+P +          
Sbjct: 728 VSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------- 780

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A+ G KLV AD + IE R+L+ +A      KAF 
Sbjct: 781 -----------------GRKIRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQ 823

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +G DI+  T ++ F  P++ +  E R   K +   + Y     G A          G  +
Sbjct: 824 DGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYI 883

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++ +       + D                     +   ++ +  ++      A+  +L
Sbjct: 884 KRYFERFPGIRAYMDETRDFCRAHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARL 943

Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            G+A +++++A           +   Q +LQ+  +L         E      R V
Sbjct: 944 QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRSV 998


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 137/417 (32%), Gaps = 67/417 (16%)

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLW 188
             D          H +     G   ++  + T EL+++L P            + E  L 
Sbjct: 411 DADPGGCGLENQAHRRLDLKLGGAAEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLT 470

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G RID   + +L  L+  +   L  +I  L      +      L   LF  
Sbjct: 471 RVLARMERTGIRIDGAELKRLSVLMESQISGLTAEIHALAGKPF-NISSPQQLGKVLFED 529

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-D 302
             +              +   + +LA +  + R       + KL     + L   +    
Sbjct: 530 LNLPAPVKYGKGKTISTAADVLDELAAEHEIVRKVLEYRQLTKLKGTYVDALPALIDPAT 589

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GRL  +    GA+ TGR S      QN+P +                             
Sbjct: 590 GRLHTSFNQTGAA-TGRLSSSNPNLQNIPIRT------------------------SLGR 624

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R+  +  +G KL+VAD + IE R+LA ++G++  ++AF  GEDI+  T A+    P  
Sbjct: 625 EIRAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPL 684

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V+ E R   K +   + Y     G A       +     ++ +         F +   A
Sbjct: 685 MVTPEARRDAKAVNFGIVYGISAFGLAAQLGIGRAEAERYIKNYFARYVGVKRFIEETIA 744

Query: 479 E---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
           E                       +   +      AV   L GTA +L+K A     
Sbjct: 745 EVRKTGVTKTLFGRERPIPEINGRNPNARGFAERTAVNSPLQGTAADLIKLAMVRID 801



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLCS 649
             + +Q  + D++   M          G+   +   VHDE+V E P      V  +  
Sbjct: 781 VNSPLQGTAADLIKLAMVRIDAALAAGGFQAAMLLQVHDELVFECPPEELDEVSRMVK 838


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/566 (17%), Positives = 182/566 (32%), Gaps = 110/566 (19%)

Query: 46  DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR 101
           D  EQ  +   L +    L       V  +  ++  +       DI        T + + 
Sbjct: 381 DMPEQLPLDEVLTRLKPWLESADRKKVGQHLKYDAQVLANY---DIELNGIEHDTLLESY 437

Query: 102 TNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQ 157
                 +     LAL        K E+  GK      F + ++                 
Sbjct: 438 VVESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----- 492

Query: 158 LFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLV 206
                       T +L   L P             + E  + L+ + +   G  ID   +
Sbjct: 493 -----------ITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARL 541

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
                 IA    +L+    +L  G   +      +    F    + +V  +     S   
Sbjct: 542 HAQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-D 599

Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRW 320
              + +LA+D  L +L      + KL     + L   V+   GR+         + TGR 
Sbjct: 600 EEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYA-QAVAVTGRL 658

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P +                              +R   IA+ G ++V AD
Sbjct: 659 ASNDPNLQNIPVRT------------------------AEGRRIREAFIAAPGHRIVSAD 694

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A I+G+   ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L 
Sbjct: 695 YSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLI 754

Query: 441 YQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM 485
           Y       A           L + ++       + + +  +A +             LW+
Sbjct: 755 YGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL 814

Query: 486 ----------QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWK--- 522
                     +      A+   + GTA +L+K +           R   + ++Q+     
Sbjct: 815 PEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELV 874

Query: 523 -DLTEGFACVVQEGGSISARRVANVP 547
            ++ EG   +V+E        VA + 
Sbjct: 875 LEVPEGELSLVREKLPEMMCGVAKLK 900


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/568 (17%), Positives = 193/568 (33%), Gaps = 73/568 (12%)

Query: 32  LCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           LCA       + L +  E++  + S L + ++DE V+ VAHN+ F+  +  +     +P 
Sbjct: 380 LCADEKQAYFIPLPESAEEATHILSPLKELMQDERVLKVAHNAKFDLEVLTRY---GLPE 436

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TR 149
            R +  ++LA               ++  +  +  E    L+        D  P +    
Sbjct: 437 ARPLYDTMLAHYL------------IDADQGHSLDELAGGLLRYDTIRYKDLSPLEIFAL 484

Query: 150 ANHVQAWQLFGEYCKRDVEATRELF----KRLIP-----LSDGERDLWLLDQTINDRGYR 200
              V   +L  +Y   D   T  L+    K+L P     L++ E  L  +   +  RG  
Sbjct: 485 RTDVDP-KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIV 543

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEG 259
           +D++ + + ++ + +   +L+++I   +   +         +   LF    I        
Sbjct: 544 LDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQIMEKPRKTK 603

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314
           T   + +   +  L     +  L        KL     + L +    DG+L  +      
Sbjct: 604 TGSYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAV 662

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +      L +   A                     I    G 
Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPI----GA 718

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + +E RV+A ++ +   I +F +G+DI+  T AK F    ++V+   R+  K 
Sbjct: 719 VLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKT 778

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAE 479
               + Y     G ++            ++++         F +            E A 
Sbjct: 779 ANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAF 838

Query: 480 SHHLWMQD----------QYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQ 519
                +++               A+   + GTA +++K A             +   VLQ
Sbjct: 839 GRRRQLRNLRTARGAQRGNAERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQ 898

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVP 547
           +  +L         E  +   R      
Sbjct: 899 VHDELVLNVYLDELERVTALVREAMECA 926


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 110/585 (18%), Positives = 185/585 (31%), Gaps = 126/585 (21%)

Query: 95  CTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
             ++ A    LP SL       A             +   + F   ++D+          
Sbjct: 392 MLAMDAAFAALPLSLWFDLGLAAYLLDPEQRNYGFPRLRDSLFADPTVDASAVSPDDTAR 451

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             A        + D     +L +RL      E  L  +   +   G  +DL  +      
Sbjct: 452 AAALLAEVYTARLDTAGLTDLVERL------ELPLIPVLLDMERAGIGVDLRSLAAFGAE 505

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS 268
           +A +  +L++++  L      + R +  L   LF   G+     + G    T +  L   
Sbjct: 506 VATDLTRLEKELHTLAGHPF-NPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQDALERL 564

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             +    D IL            L+ L +   +DGR+  TL    A+ TGR S      Q
Sbjct: 565 AGSNPLVDRILEFRKLEKLRSTYLDPLPKLADADGRIHTTLNNM-ATATGRLSSSNPNLQ 623

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                        G     +R C +A  GK LV AD + IE RV
Sbjct: 624 NIPIR------------------------GPLGRRMRECFVAGPGKTLVAADYSQIELRV 659

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++GE   + AFA G DI+  T +  F+ P  ++  ++R   K +   L Y  G +  
Sbjct: 660 LAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTINFGLLYGMGPQ-- 717

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             ++   G+ L      +     FE      + +  + +          L          
Sbjct: 718 -KLSRDLGIKLDAAKAFI--AKYFERLSGLSAFYDNIVESAKTQGYVTTLA--------- 765

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                  G  +L  D+                               ++  +   + R+ 
Sbjct: 766 -------GRRRLLPDIE-----------------------------SKNSQLASQARRQA 789

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGY 622
           +                               +VQ  + DI+   M  A K       G 
Sbjct: 790 I-----------------------------NTVVQGGAADIIKMAMLAAHKDADLKRAGA 820

Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666
            +VL +HDE++ ETP     +    L  LM      A  +PL  +
Sbjct: 821 VMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVD 863


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 101/507 (19%), Positives = 168/507 (33%), Gaps = 78/507 (15%)

Query: 56  DLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
           +++  L     +      AHN+ F+  +     GI +    +  T + A   G    LK+
Sbjct: 406 EVVTALAPFFANPQQPKFAHNAKFDMEVLA-GAGIKVSGLAF-DTMIAAAMLGKRQGLKD 463

Query: 112 ACLA-LNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                L   E        +  G   I  F +  ++        A          E  +R 
Sbjct: 464 LAFYELKLPEPPTTIEDLIGRGNKQI-SFAEVPVEQAA--PYAAADALYTLRLTERLQRQ 520

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +EA   L          E  L  +   +   G R+D + + +L    AQ    L E I +
Sbjct: 521 LEAEPALHDLYY---RVELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQ 577

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS---------ILSHSNITQLAKDL 277
              G   +      L   LF   GID        LKS         +   S +  +A D+
Sbjct: 578 QAGGPF-NINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADI 636

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +  R   +      ++ L + V+   GR+  +    GA+ TGR S      QN+P +   
Sbjct: 637 LTYRQ-LTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAA-TGRLSSNNPNLQNIPVRT-- 692

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A  G + V AD + IE RVLA ++G++
Sbjct: 693 ----------------------EEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDE 730

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I AF  G DI+  T ++ F      V K QR + K +   + Y     G A+      
Sbjct: 731 NLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIER 790

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQYPE-------------------F 492
                 +            + D        H ++Q  +                      
Sbjct: 791 DLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLRASGARRAAAERE 850

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519
           A+   + GTA +L+K A    H+ + +
Sbjct: 851 AINAPIQGTAADLMKMAMVNVHRALRE 877



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + D++   M N  +     G    ++L VHDE+++E P+        L
Sbjct: 856 IQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARL 907


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 155/421 (36%), Gaps = 60/421 (14%)

Query: 175 KRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +RL PL  + ER L  +   +   G  +D   +  +     +  + L+  I         
Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF- 548

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +   T  L   LF+   + +V   +           + +LA+   L RL     ++ KL 
Sbjct: 549 NVASTRELAQVLFVELELPVVKRLK--TGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLK 606

Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L + V   DGR+  T    GA+ TGR S      QN+P +              
Sbjct: 607 GTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRT------------- 652

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   +A  G +L+ AD + IE R+LA  + +   ++AF + ED
Sbjct: 653 -----------ELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRED 701

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++  T A+ F  P ++V+ +QR I KV+   + Y     G ++      S     + ++ 
Sbjct: 702 VHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYF 761

Query: 464 QNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTA 502
                   + +W   E                     + +  +++     A+   + GTA
Sbjct: 762 TRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGARNPALRNAAERTAINTPIQGTA 821

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            ++VK A    H  + Q  +          +    +  R +A V  LV R  +    + +
Sbjct: 822 ADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGAARLKV 881

Query: 563 P 563
           P
Sbjct: 882 P 882



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 21/80 (26%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS------ 649
           +Q  + DI+   M          +    ++L VHDE+V E P+     V  L        
Sbjct: 817 IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGA 876

Query: 650 ---------LMTKNPSWAKG 660
                     +    +WA+G
Sbjct: 877 ARLKVPLEVQVGHGQTWAEG 896


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/589 (15%), Positives = 188/589 (31%), Gaps = 110/589 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60
           L +D ET S            A  A +   +++ +++    V +    E++    ++ + 
Sbjct: 350 LSLDTETTS-VD---------AIDAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFKP 399

Query: 61  L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
           L  +E ++ V  N  ++  + KK  GI +  K  +  +++A       L  ++      L
Sbjct: 400 LYENEEILKVGQNIKYDYEVLKKY-GITLKGK--LFDTMIAHYLIQPELHHNMDYMAETL 456

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +     +E+      +  K   D  P + +             Y   D + T  L   
Sbjct: 457 -LNYQTVHIEDIIGPKGKKQKNMRDLAPAEVSD------------YACEDADITLRLKNA 503

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P            + E  L  +   +   G R+D + + +   +  +   K + +I +
Sbjct: 504 LEPKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEIYE 563

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      +   LF    I        T + + S   +  L     +       
Sbjct: 564 LAGETF-NISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKILEY 622

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             I KL     + L + V    G +  +      + TGR S      QN+P +       
Sbjct: 623 RGIKKLLSTYIDALPKLVKPQTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD---- 677

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R C I         AD + IE R++A ++ ++  ++
Sbjct: 678 --------------------GKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMME 717

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T AK ++  ++ V+  QR   K     + Y     G A+          
Sbjct: 718 AFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAK 777

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +  + +       + +                          S +  ++      A+ 
Sbjct: 778 ELIADYFKTFPKVQAYMEEAKEVARRKGYAETIFHRRRYLADINSRNATVRGFAERNAIN 837

Query: 496 DKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534
             + G+  +++K A    HQ           +LQ+  +L        +E
Sbjct: 838 APIQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDELNFSVYPEEKE 886


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 104/612 (16%), Positives = 199/612 (32%), Gaps = 105/612 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---- 62
           D ET    PL           A +   A++W+          E      +L++ LR    
Sbjct: 380 DTETTGLNPLT----------AELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRPFFE 429

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
           ++ +  +  N  ++  +  K    ++  K  +  ++LA              LA  +  +
Sbjct: 430 NDNIEKIGQNLKYDIKVLAKY---NVEVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNY 486

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
                    LI +  K  +        +           EY   D + T +L +      
Sbjct: 487 TPI--SITELIGKKGKNQLSMREVPLDKQT---------EYAVEDADITLQLKEHFEKEL 535

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                    +D E  L  +   +   G  +D D +  L E +  +   L++ I +     
Sbjct: 536 GEANTQKLFNDIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAAGEE 595

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              +     L + LF    +        T +   +   ++ LAKD  + +       + K
Sbjct: 596 FNIA-SPKQLGVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFRGLSK 654

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   V    GR+         + TGR S      QN+P +            
Sbjct: 655 LKSTYVDALPLQVDESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER--------- 704

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             VR   +       L+ AD + IE R++A ++ E+  I+AF N
Sbjct: 705 ---------------GRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKN 749

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           GEDI+ +T +K FN PI +V++EQR+  K +   + Y     G +       S     ++
Sbjct: 750 GEDIHASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRSEAKELIE 809

Query: 461 QFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLI 499
            +         +                        +   S +  ++      AV   + 
Sbjct: 810 TYYATYPKLRAYMSEQVDFARDNGYVQTVLGRRRYLKDINSRNAVVRGAAERNAVNAPIQ 869

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G+A +++K A          ++K L  G     +    +    V +V +  +   K  + 
Sbjct: 870 GSAADIIKIAMIN-------IYKKLQTGAYKT-KMLLQVHDELVFDVYKPELEGLKNLIK 921

Query: 560 IVLPSSRRLVYS 571
             + ++  L   
Sbjct: 922 TEMENAYELSVP 933


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/617 (15%), Positives = 197/617 (31%), Gaps = 109/617 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWD--------RT 48
               ID ET               + A +   ++A         PV   D         T
Sbjct: 358 KHFVIDTETT-DVNW---------QHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLART--NGL 105
            +  + + L   L++  +  +  +  ++  +     + +      W   ++LA    N +
Sbjct: 408 REDVL-AQLKPILQNPQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAV 466

Query: 106 PSSLKNACLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHVQAWQLFG 160
            +      LA ++    T   +   GK      F K  +  +  Y C  A+    +QLF 
Sbjct: 467 ATRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKVPLTVASDYACEDADIT--YQLF- 523

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           E     ++A     K L    + E  +  +   +   G  ++   + +L     ++ + L
Sbjct: 524 ELFSEKLKAEPNNAKLL---HELEIPVAQILCQMEHDGILLNKAFLGELSARFDEKIQAL 580

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQL 273
           +             +     L   LF   GI     ++         + + + H  I  +
Sbjct: 581 ETVAFAQAGETFNLA-SPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATIDHPLIETV 639

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +   L++L S+ +     + L+    S+ R+  +      + TGR S      QN+P +
Sbjct: 640 LEHRSLSKLKSTYT-----DALANVADSNDRVHTSY-HQALTTTGRLSSTEPNLQNIPIR 693

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+K++ AD + IE R++A  A
Sbjct: 694 T------------------------DTGRLIRGAFIAPKGRKVLSADYSQIELRLMAHFA 729

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   I+AF  G DI+  T A+      D V+ E+R   K +   L Y       AK   
Sbjct: 730 NDPVLIRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVNFGLLYGMSEFGLAKQLG 789

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQ 488
                    ++ +     +   +    +  + +                       ++  
Sbjct: 790 FTRQQAQDYIKLYFARYPTVRAYMQATRTAAQNQGYITTILGRKLFTPDMQHPNRGVRQA 849

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQ--------GVLQLWKDLTEGFACVVQEGGSISA 540
               A+   L G+A +++K A  A ++         +LQ+  +L         E  +   
Sbjct: 850 AERAAINAPLQGSAADIIKLAMIAVNEVLPTEHAKMLLQVHDELVFEADEDKAEAIAELI 909

Query: 541 RRVANVPRLVMRRHKRD 557
           +           + K  
Sbjct: 910 KNAMQEVLSKTAKDKGW 926


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 97/578 (16%), Positives = 190/578 (32%), Gaps = 113/578 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLR 62
           D ET     L           A +   A+++            D+ E   +  +  + L 
Sbjct: 368 DTET---TDLEPT-------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEFKEVLE 417

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNF 118
           +E +  +  N  ++  + +   G+ +  K  +  ++LA     P +  N  +     LN+
Sbjct: 418 NEDITKIGQNLKYDIQVMRNY-GVRVQGK--MFDTMLAHYLLDPETRHNMDVMAENYLNY 474

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           S        GK  +    +G++   P            +   EY   D + T +L   L 
Sbjct: 475 SPVSITDLIGKKGVK---QGNMRDVPV-----------EDVVEYAGEDADITLQLKHILE 520

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                      L D E  L  +   +   G +ID D + K+ + +     +  E I +L 
Sbjct: 521 KEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFELA 580

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 +     L   LF    +        T +       +++LA +  +         
Sbjct: 581 GQEFNIA-SPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILEFRE 639

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             KL     + L + +S  DGR+    +    + TGR S      QN+P +         
Sbjct: 640 YQKLKSTYVDALPKLISKKDGRVHTDYR-QAVAATGRLSSNNPNLQNIPIRTEK------ 692

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   +      +L+ AD + IE R++A  + ++  ++A
Sbjct: 693 ------------------GRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMMEA 734

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F NG DI+ TT AK F   +D V    R   K +   + Y     G A+      +    
Sbjct: 735 FKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNFGIIYGISAFGLAQNLNISRTEASD 794

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            ++ + +       + +                          S +  ++      A+  
Sbjct: 795 IIKAYFKEFPRVHDYMEKVKEDARANEYVTTILGRKRWLRDINSRNQTIRGYAERNAINA 854

Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
            + G+A +++K A    H          + ++Q+  +L
Sbjct: 855 PIQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDEL 892


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/553 (17%), Positives = 182/553 (32%), Gaps = 95/553 (17%)

Query: 28  AVITLCAYAWDDEP---VKLWDRTEQS-AMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           A I   ++A +      V   D  EQ+  + +     L D  +  +  N  ++ +L  + 
Sbjct: 373 ADIVGLSFAIEKGKAYYVPTPDSREQALEIINIFKPILEDPAIQKIGQNIKYDILLLSRY 432

Query: 84  LGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
              D+  K  +  ++LA       +      LA N+  ++        LI    KG    
Sbjct: 433 ---DVKVKGALFDTMLAHYLIDPDTRHGMDVLAENYLGYIP--VSITKLIGE--KGKKQG 485

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQ 192
              D          +L  EY   D + T +L ++  PL +           E  L  +  
Sbjct: 486 NMRDVEI-------ELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLS 538

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I   G +ID+D++    + I ++ + L+  I +        +     L   LF    +D
Sbjct: 539 EIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIA-SPKQLGEVLFDKLQLD 597

Query: 253 LVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
                  T +       +  LA        IL+           ++ L   ++ +  L  
Sbjct: 598 PKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFRQLQKLKSTYVDALPSLINPNTGLIH 657

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T      + TGR S      QN+P +                              VR  
Sbjct: 658 TSYNQAVAATGRLSSTNPNLQNIPIRTER------------------------GREVRKA 693

Query: 368 IIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            I       ++ AD + IE R++A ++ +   ++AF  G DI+  T AK +   +D+VS 
Sbjct: 694 FIPRSENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSS 753

Query: 427 EQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH- 481
           +QR   K +   + Y   A    +            + Q+ Q       +     A +  
Sbjct: 754 DQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGIRDYMSKAIASAKE 813

Query: 482 --------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA--------- 512
                               ++ ++      A+   + G+A +++K A            
Sbjct: 814 NGFVETILKRRRYLRDINSANMTVRGFAERNAINAPIQGSAADMIKVAMLRIQEDIEEQQ 873

Query: 513 -KHQGVLQLWKDL 524
              + ++Q+  +L
Sbjct: 874 LAGKMIMQVHDEL 886


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/492 (18%), Positives = 156/492 (31%), Gaps = 74/492 (15%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
            LA        L      L   E +        L+  +     ++ P    R    +   
Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTHPEGVARRYGGE--- 399

Query: 158 LFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            F E        +  LF+ L P           + ER L  +   +  RG R+D+ L+  
Sbjct: 400 -FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L   + +E ++L+ ++ +L      +      L   LF   G+  V  +E T K   +  
Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQG 517

Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
            +  L     +  L      + KL     + L   V    GRL        A+ TGR S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLSS 576

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +                              +R   +A  G  L+ AD +
Sbjct: 577 SDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADYS 612

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++G++   + F  G+DI+  T A  F      V  + R   K +   + Y 
Sbjct: 613 QIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYG 672

Query: 443 GGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------- 484
             A    +            ++++ Q+      + +    E                   
Sbjct: 673 MSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPD 732

Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVVQ 533
                  +++     A    + GTA +L+K A       +      L   + +     V 
Sbjct: 733 LASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVP 792

Query: 534 EGGSISARRVAN 545
           E  +  A+ +  
Sbjct: 793 EDRAEEAKALVK 804



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           ++   M          G  ++L VHDE+V E P+        L   +M
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 174/527 (33%), Gaps = 94/527 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L    ++ +  N  ++ ++  K  G+D+       T +L+    L + L    +  
Sbjct: 418 LKPLLEAAHILKIGQNIKYDMVVLAKY-GVDVAPYD--DTMLLSY--DLDAGLGGHGMDE 472

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK- 175
               HL     G       C        +D           +  EY   D + T  L++ 
Sbjct: 473 LAQRHLDH---GCIEFKTVCGTGKSQISFD------KVTLDVATEYAAEDADVTLRLWQL 523

Query: 176 ---RLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              RL P          +R L  +   +   G ++D + + +L    + E  +L+  I  
Sbjct: 524 LKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFSGEATRLEAAIHA 583

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285
                         L   LF   G+      +  +      + + +LA D + + RL   
Sbjct: 584 EAGTPFT-VGSPKQLGDILFDKMGLKGGRKGKTGV-YSTDVTELERLAGDGVAIARLVLD 641

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     + L + ++   GR+         ++TGR S      QN+P +      
Sbjct: 642 WRQLTKLRSTYTDALQQQINPATGRVHTCFSM-AVAQTGRLSSTDPNLQNIPIRS----- 695

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  GK ++ AD + IE R+ A +A      
Sbjct: 696 -------------------DHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVPALK 736

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AFA G+DI+  T  + F     +V+++ RA  K +  ++ Y     G A   +      
Sbjct: 737 DAFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSILYGISAWGLAGRLEVSREEA 792

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAE--------------SHHLWM-------QDQYPEFAV 494
              + ++       + +      +              +H  W+       +      A+
Sbjct: 793 QGMIDRYFSRFPGINHYIAATLGQVRDQGYVSTLFGRKTHLPWIRSAKQGERQSAERQAI 852

Query: 495 KDKLIGTACELVKKAWRAKHQ-------GVLQLWKDLTEGFACVVQE 534
              + GT+ +++K+A    +        G +++   + +     +  
Sbjct: 853 NAPIQGTSADIIKRAMVRMNPALAAAGLGDVKMLLQVHDELVFELAP 899


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/511 (16%), Positives = 164/511 (32%), Gaps = 96/511 (18%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--ARTNGLP 106
            ++     L   L D +++ V  N  ++ ++ +     DI    +  T +L  A   G  
Sbjct: 405 SEATALDILKPVLLDPSILKVGQNLKYDLLILR---ERDIDVVGYDDTMLLSYAADCGFA 461

Query: 107 SSLKNACLALN-FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
           S      L+           +E    GK           D+  Y                
Sbjct: 462 SLHGMDELSKRHLGHEPIPYKEIVGTGKKQKTFGDVPIKDAYIY---------------- 505

Query: 162 YCKRDVEATRELF----------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
               D + T  L           +        +R L  +   +   G ++D D +  L  
Sbjct: 506 -AAEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSALSG 564

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
             AQ     +  +  +       +     +   LF   G+     ++     T    L  
Sbjct: 565 EFAQRMAAHEAAVHDIAGERFNLA-SPKQIGDILFGKLGLPGGKKTKTGAWSTAADTLET 623

Query: 268 --SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
             ++  ++A++++ +R   +       + LSE++    GR+  +     ++ TGR S   
Sbjct: 624 LAADGAEIAQEILSHR-GLAKLKGTYTDALSESIHPKTGRVHTSFSL-ASTTTGRLSSND 681

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P +                              +R   I  +G  L+ AD + I
Sbjct: 682 PNLQNIPIRTED------------------------GRKIREAFIPEDGNVLISADYSQI 717

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E R+LA IA     I+AF  G DI+  T A+ F  P++ +    R   K +   + Y   
Sbjct: 718 ELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAINFGIIYGIS 777

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479
             G A+          L ++++ +       + D                         +
Sbjct: 778 AFGLARNLGIGRDEASLFIKRYFERFPGIKAYMDETIEGARVHGYVETLFGRRSHTPNIK 837

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           +    ++      A+   + G+A ++VK+A 
Sbjct: 838 AKQPNIRMGAERQAINAPIQGSAADIVKRAM 868


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/554 (17%), Positives = 181/554 (32%), Gaps = 91/554 (16%)

Query: 28  AVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-G 85
           A      + +   P +L  +    +  P      L    +   AH    +R   +  L  
Sbjct: 352 AFYLPLRHQYLGAPAQLSAEEAAGALRP------LLSGELPKHAH----DRKGVQHALAQ 401

Query: 86  IDIPSKRWICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           + +        + LA    LP+    +L +          L +   G     +      +
Sbjct: 402 LGLALGGPGADTDLASRLLLPTRREHALADVARE-RIGCELPRDPSGGDAARK-----SE 455

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVE--ATREL-FKRLIPLS-DGERDLWLLDQTINDR 197
             P +      V  W         D+     R L  + L+PL  D ER L  +   +   
Sbjct: 456 RVPVEGLEVERVGEWAAQCAASLLDLAPALERALESEGLLPLYRDVERPLVPVLCEMERA 515

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D   +  +     +  + L+  I          +  T  L   LF    + ++   
Sbjct: 516 GILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHPFNIA-STRELAQVLFTELALPVLKRL 574

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQF 311
           +           + +LA+   L RL     A+ KL     + L + V   DGR+  T   
Sbjct: 575 KTG--PSTDQDVLEKLAEQHELPRLVLEHRALAKLKGTYVDALPQLVDPRDGRIHTTFHQ 632

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA+ TGR S      QN+P +                           S  +R+  +A 
Sbjct: 633 AGAA-TGRLSSSDPNLQNIPVRT------------------------ELSRRIRAAFVAP 667

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G +L+ AD + IE R+LA  + +   ++AF   ED++  T A+ F     +V+ + R I
Sbjct: 668 PGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDMRRI 727

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            KV+   + Y     G ++      +     + ++         + +             
Sbjct: 728 AKVLNFGIAYGLSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEKAVEDARATGESR 787

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ------GVLQL 520
                     +  + +  +++     A+   + GTA ++VK A    H          +L
Sbjct: 788 TLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVAMIRVHDALAGDARRARL 847

Query: 521 WKDLTEGFACVVQE 534
              + +     V E
Sbjct: 848 LLQVHDELVLEVPE 861


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/580 (17%), Positives = 182/580 (31%), Gaps = 102/580 (17%)

Query: 7   DIETRSPQPLPK---VG---VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           D+ET     + K   VG    W   E   + L A     + V       + AM + + ++
Sbjct: 381 DVETT-DIDVMKAVPVGFSLSWKAGEAWYVPLVA---GGKTVS-----NEKAMKAVVKKH 431

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +  +  +  N  ++  +  +              +           L +A    N  +
Sbjct: 432 LENPALGVIGQNLKYDYKVMARWGVRIANPVFDTMVAAWL--------LDSASGIYNMDK 483

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K   G   I           P     ++         +Y   D + T  L++   P+
Sbjct: 484 LADKYL-GYVTITY-----DQVVPKGALFSDVPL--DKAVQYAAEDADVTWRLYETFAPM 535

Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      D E  L  +   +   G R+D+D ++   E I    +K+  +I +L   
Sbjct: 536 LAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITREIYELCGH 595

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L+  LF   G+ +   +     T    L           LIL+       
Sbjct: 596 EF-NINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPALILDYRGLVKL 654

Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L E V  + GR+  T    G + TGR +      QN+P +             
Sbjct: 655 KNTYIDALPEQVDVNTGRVHTTFIQTG-TATGRLASRNPNLQNIPIRNDD---------- 703

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +RS  +   G   + AD A IE  VLA + G++   +AF  G+
Sbjct: 704 --------------GRRIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQ 749

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462
           D++  T +  FN   + V+ +QR I K +   + Y       +       S     +  +
Sbjct: 750 DVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVMYGMSTFRLSNELAISHSQAAEFIDSY 809

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGT 501
            +      TF D  + ++                                  V   + GT
Sbjct: 810 FKRYHGVKTFVDETRKKAEETGFVSTMFGHERHVPEIRSSNRMEKSGAERVVVNTIIQGT 869

Query: 502 ACELVKKAWRA-----KHQGV-LQLWKDLTEGFACVVQEG 535
           A +++K A        K  G+  +L   + +     V  G
Sbjct: 870 AADIMKLAMLRISRSLKDSGINARLLLQVHDELIFEVASG 909



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              I+Q  + DI+   M   +++         ++L VHDE++ E        +  L  
Sbjct: 862 VNTIIQGTAADIMKLAMLRISRSLKDSGINARLLLQVHDELIFEVASGQEEKLSVLVK 919


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 188/562 (33%), Gaps = 92/562 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPS 55
             +L ID ET S +          A  A +   A++W+       P  L D T    +  
Sbjct: 352 FERLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLE 401

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   LR      V  N  ++ ++  +  G+ +P   +  T V               LA
Sbjct: 402 RLAPILRRAQ-RKVGQNLKYDLVVLARH-GVQVPPP-YFDTMVAHYLIAPEEPHNLDVLA 458

Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEA 169
             +  +        +  G+   +       +  PY C   +     QL        D   
Sbjct: 459 RQYLRYQMVSITELIGSGRDQKSMRDVSIDEVGPYACEDTDIAL--QLADVLAAELDRHG 516

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            R + +      + E  L  +   +   G  ID  ++ ++ + +  E  +L+  I ++  
Sbjct: 517 LRHIAE------EMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKIYEVAG 570

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF   G+     +  T +     S + +LA    L  L      +
Sbjct: 571 VEF-NIGSPQQLADVLFKKLGLKPRART-STGRPSTKESVLQELATQHPLPGLILDWRHL 628

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
            KL     + L   +    GR+  T      + TGR S      QN+P R E   E    
Sbjct: 629 AKLKSTYVDGLEPLIHPETGRIHTTFN-QTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +   G KL+ AD   IE R+LA ++G++   +AF
Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
             G+DI+  T A+ F  P ++V+ EQR   K++   + Y     G A+  +         
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           ++++ +     + +      E+      +                          AV   
Sbjct: 783 IEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842

Query: 498 LIGTACELVKKAWRAKHQGVLQ 519
           + GT  +++K A    +  + +
Sbjct: 843 IQGTQADMIKLAMVHIYHRLKR 864


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 149/454 (32%), Gaps = 80/454 (17%)

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIP-----------LSDGERDLWLL 190
           D    N     + +G   K D  A    +  L++ L P             + ER L  +
Sbjct: 379 DPGNTNPEGVARRYGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLAQV 438

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G R+D+  +  L + +A E ++L+ ++ +L      +      L   LF   G
Sbjct: 439 LAHMEATGVRLDVPYLEALSQEVAFELERLEAEVHRLAGHPF-NLNSRDQLERVLFDELG 497

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304
           +  +  +E T K   S + +  L +   +         ++KL     + L   V    GR
Sbjct: 498 LPPIGKTEKTGKRSTSAAVLELLREAHPIVGRILEYRELMKLKSTYIDPLPRLVHPKTGR 557

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           L        A+ TGR S      QN+P +                              +
Sbjct: 558 LHTRFN-QTATATGRLSSSDPNLQNIPVRT------------------------PLGQRI 592

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   IA  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T A  F  P + V
Sbjct: 593 RKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGV 652

Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
               R   K +   + Y   A    +            ++++ Q+      +      E 
Sbjct: 653 DGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAKTLEEG 712

Query: 481 HHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--- 516
                                    +++     A    + GTA +L+K A          
Sbjct: 713 RKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRP 772

Query: 517 -----VLQLWKDLTEGFACVVQEGGSISARRVAN 545
                +LQ+  +L         E  +  A+    
Sbjct: 773 LGVRILLQVHDELVLEAPKARAEEAAQLAKETME 806



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 11/212 (5%)

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           K F     H  + L      ++  +     E         +D + E A    + G   E 
Sbjct: 594 KAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETA--AWMFGVPPEG 651

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHKRDVHIVLP 563
           V  A R   +  +            + QE         A + R      + +  +   L 
Sbjct: 652 VDGAMRRAAK-TVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAKTLE 710

Query: 564 SSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM----KNA 617
             R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M       
Sbjct: 711 EGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL 770

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              G  I+L VHDE+V E P         L  
Sbjct: 771 RPLGVRILLQVHDELVLEAPKARAEEAAQLAK 802


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 97/557 (17%), Positives = 188/557 (33%), Gaps = 89/557 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  +  +E+++ +  N  ++  +     GI++  + +  T +               L+ 
Sbjct: 405 LKPFFENESILKIGQNLKYDFKILANY-GIEVKGE-FFDTMIAHYLLNPDMRHNMDLLSE 462

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  +     E   LI +  KG +                +L  EY   D + T +L   
Sbjct: 463 AYLGYSPISIE--TLIGKKGKGQLTMRAV---------PAELQKEYAVEDTDVTLQLKHV 511

Query: 177 LIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +PL +           E  L  +   +   G R+D   + +L + IA +   L++ I  
Sbjct: 512 FLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTIFS 571

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +     S     L   LF    +        T +   S   +++LA    +       
Sbjct: 572 QAEESFNLS-SPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVLEF 630

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            A+ KL       L   V+   GR+  T      + TGR S      QN+P +       
Sbjct: 631 RALQKLQSTYIEALPREVNPHTGRIHTTF-MQAVTATGRLSSNQPNLQNIPIRT------ 683

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +       L+ AD + IE R++A ++ ED  I
Sbjct: 684 ------------------PRGSQIRKAFVPRNEDYTLLSADYSQIELRIIAALSEEDHMI 725

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G+DI+ +T AK F  P++ V+KEQR+  K +   + Y     G ++      S  
Sbjct: 726 EAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQS 785

Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494
              +  + Q      T+ +                          S +  ++      AV
Sbjct: 786 KELIDTYYQTYPKLKTYIEKQIFFAREHGYVQTILGRRRYLPDVYSRNQVVRGAAERNAV 845

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              + G+A +++K A     Q + +             +    +    + +VP+  +   
Sbjct: 846 NAPIQGSAADIIKIAMVRIAQRIQK--------EGLATRMLLQVHDELLFDVPKKELEVA 897

Query: 555 KRDVHIVLPSSRRLVYS 571
           K  +   + ++  L+  
Sbjct: 898 KALIREEMENAYTLIVP 914


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 95/623 (15%), Positives = 195/623 (31%), Gaps = 123/623 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMP 54
           +     D ET S             +     L   A+  E      V +    E++  + 
Sbjct: 373 LKTFCFDTETTS------------LDTKEARLIGLAFAFEKQKGFYVAVPADPEEAREIL 420

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            +      +E +  V HN  ++  + K           W          G+   L +  L
Sbjct: 421 QEFRAVFENEQIQKVGHNLKYDLAVLK-----------WHG-------VGVHGKLFDTML 462

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG----------EYCK 164
           A +  E      E +  +    +  +   P   T+    +  +             EY  
Sbjct: 463 AHSLIE-----PEMRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMADVPVAKVAEYAA 517

Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T +L+++L PL           + E  L  +   +   G ++D   + +    ++
Sbjct: 518 EDADVTWQLWEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLS 577

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +E    ++ I +L      +      L   LF    I        T +   +   +  LA
Sbjct: 578 KEMANHEQTIYRLAGQEF-NLNSPRQLGEILFDKLKISENAKKTKTGQYATNEQTLMDLA 636

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            D  + +         KL     + L   +    GR+  T      + TGR +      Q
Sbjct: 637 ADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFN-QAVTTTGRLNSQNPNLQ 695

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P +                              +R   +       L+ AD + IE R
Sbjct: 696 NIPIRT------------------------EQGKEIRKAFVPRNEDYVLLSADYSQIELR 731

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443
           ++A ++ E   ++ F    DI+  T A+ +  P+D+V+ E R   K++   + Y     G
Sbjct: 732 IIAALSHEQGMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISAFG 791

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
            A+  +         ++Q+       + +                            S +
Sbjct: 792 LAQRLRIPRKEAATIIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGRRRYMRDIRSAN 851

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
             ++      A+   + GTA +++K A    H  + +  + L       V +       +
Sbjct: 852 AAVRGGAERNAINAPIQGTAADMIKIAMINIHGELTK--RKLKSRMLLQVHDELVFDVHQ 909

Query: 543 V--ANVPRLVMRRHKRDVHIVLP 563
                V ++V  + +  + + +P
Sbjct: 910 TEENEVRQIVEEKMRTAIQLEVP 932


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 96/560 (17%), Positives = 188/560 (33%), Gaps = 81/560 (14%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQSAMPSDLLQ 59
           ID ET S       L  +     A +A      +A + +    K  DR     + + L  
Sbjct: 396 IDTETTSVYWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDR---DTVLARLKP 452

Query: 60  YLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART--NGLPSSLKNA 112
            L +  +  +  +  ++  +           I      W   ++LA    N   +     
Sbjct: 453 ILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAITRHGMD 512

Query: 113 CLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHVQAWQLFGEYCKRDV 167
            LA ++ +  T   +   GK      F + +ID +  Y C  A+    +QLF  + K+  
Sbjct: 513 DLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADIT--YQLFDLFSKKLA 570

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           + T         L + E     +   +   G  I    + +L +   +E   L++   ++
Sbjct: 571 DDTNNAKL----LHELEIPTAEILCQMEANGILIRRPFLNELSKRFDEEIIALEKRAYEV 626

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L   LF   G+     ++ T +     + ++++   L+   L   G 
Sbjct: 627 AGEEF-NLGSPKQLGEMLFDKLGVVGGKKTK-TGQYSTGEAVLSKIDHPLVDITLEYRGL 684

Query: 288 AILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + LK    + L     +      T      + TGR S      QN+P +  +        
Sbjct: 685 SKLKSTYTDALDNVADAKTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTAT-------- 736

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G+ ++ AD + IE R++A  +G+     AF  
Sbjct: 737 ----------------GRLIRQAFIAPEGRVILAADYSQIELRLMAHFSGDKNLTHAFNE 780

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G DI+  T A+     + +V+  +R   K +   L Y       AK  +   S     + 
Sbjct: 781 GLDIHAATAAEVLGKEVAEVTATERRNAKAINFGLLYGMSAFGLAKQLQMSRSEAQDYID 840

Query: 461 QFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLI 499
            + +       +    +A ++                     +  ++      A+   L 
Sbjct: 841 MYFERYPGVKDYMINTRASAYEHGYIETILGRKLYTPDINHSNRMVKQGAERAAINAPLQ 900

Query: 500 GTACELVKKAWRAKHQGVLQ 519
           G+A +L+K A  A  + + +
Sbjct: 901 GSAADLIKLAMIAVDKVLPK 920


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 110/612 (17%), Positives = 204/612 (33%), Gaps = 111/612 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-------PVKLWDRTEQSAMPSDLLQ 59
           D ET    PL           A +   A++W+         P    D+TE   +   L  
Sbjct: 377 DTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPA---DKTEAQEIIEQLRP 423

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNF 118
           +  DE +  +  N  ++  +  K    ++  K     ++LA              LA  +
Sbjct: 424 FFEDEAIEKIGQNLKYDIKVLDKY---NVKVKGKCFDTMLAHYLINPDMRHNMEVLAETY 480

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             +         LI +  K  ++    D    N  +       Y   D + T +L ++  
Sbjct: 481 LNYTP--VSITELIGKKGKNQLN--MRDVPLPNQTE-------YAAEDADITYQLAQQFK 529

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P           +D E  L  +   +   G  +D   +  L E +  + KKL+ DI +  
Sbjct: 530 PELEEAKTQELFTDIEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEA 589

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 +     L   LF    +        T +   +   ++ LAKD  +     S   
Sbjct: 590 GEEFNIA-SPKQLGDILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYRG 648

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L   V    GR+         + TGR S      QN+P +         
Sbjct: 649 LAKLKSTYVDALPAQVEESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER------ 701

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                VR   +  N    LV AD + IE R++A ++ E   I+A
Sbjct: 702 ------------------GRQVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIEA 743

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F NGEDI+ +T +K FN P+++V++EQR+  K +   + Y     G +       +    
Sbjct: 744 FKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRAEAKE 803

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            +  + +      ++                        +     +  ++      AV  
Sbjct: 804 LIDTYYKTYPKLKSYMGGLVDFARDNGYVQTVLGRRRYLKDINGSNAIVRGAAERNAVNA 863

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            + G+A +++K A    H+ +        E      +    +    V +V +  +   K 
Sbjct: 864 PIQGSAADIIKIAMINIHKKL--------EEGKYKTKMLLQVHDELVFDVYKPELEEMKT 915

Query: 557 DVHIVLPSSRRL 568
            +   + ++ +L
Sbjct: 916 LIKSEMENAYKL 927


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 162/490 (33%), Gaps = 73/490 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-NACLA 115
           L   L +  +     N  ++ ++ KK  G+++    +  T + +      +    +   A
Sbjct: 426 LKPLLENPEIPKTGQNLKYDILVLKKY-GVELAPVGF-DTMLASYVLNPEARHNLDDMAA 483

Query: 116 LNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L      TK  E    GK  I  F         Y C  A+     +      +  +E T 
Sbjct: 484 LYLGRQTTKYTELVGTGKQTIGIFEVEPRKLSDYACQDADIALRLRY---SLEEQLEKTP 540

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           EL +    L   E  L  +   +  +G  ID   + +L   +  E   L E I + T   
Sbjct: 541 ELLEVCRKL---EFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELATLTERIFEATGET 597

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGS 287
             +      L   LF +  +     ++      ++ +   + +  +A DL+  R +    
Sbjct: 598 F-NIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVASDLLEYR-SLQKL 655

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               +  L + ++   GR+  +      + TGR S      QN+P +             
Sbjct: 656 KSTYIEALPKMINPLTGRVHTSFN-QSITATGRLSSSNPNLQNIPIRT------------ 702

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   I S  G  L+ AD + IE R+ A ++G+   I+AF N 
Sbjct: 703 ------------ELGKEIRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEAFRNH 750

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           EDI+  T    F+T   +++ + R   K +   + Y     G ++            +  
Sbjct: 751 EDIHAATARVIFDTK--EITPDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAKEIIDT 808

Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500
           +        +       E+                      +  ++       +   + G
Sbjct: 809 YMAKYPGMFSSLQTIIEEAKKKGYVTTLMGRRRYVPDLNSANSNIRKAAERVTMNTPIQG 868

Query: 501 TACELVKKAW 510
           TA +++K A 
Sbjct: 869 TAADIIKFAM 878


>gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 109/271 (40%), Gaps = 58/271 (21%)

Query: 416 AFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            F  PI++++K    R  GK+ ELALGY G      +M                      
Sbjct: 1   MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMG--------------------- 39

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A+   L       +   WR  +  + Q W D+ E     V+
Sbjct: 40  -------------------ALAMGLSEDELPGLVSTWRNANPHITQFWWDVDEAAVRAVR 80

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN---------TAT 584
           E      R+   V  +  +     +  +LPS R+L Y   +   +               
Sbjct: 81  E------RKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYG KL ENIVQ  SRDIL E M    K G+ IV  VHDE V E P+    SV
Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +C +M + PSW  GLPL+A+GYE + Y+K
Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/599 (15%), Positives = 189/599 (31%), Gaps = 122/599 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
              L +D ET S   +           A +   ++A ++            A+P++  + 
Sbjct: 347 FKNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYV------AIPAEREKA 390

Query: 61  LR----------DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPS 107
           LR          ++ ++ +  N  ++  +    L  DI  K  +  +++A       L  
Sbjct: 391 LRIVNIFKPLYENKKILKIGQNIKYDYEVL---LNYDIEIKGKMFDTMIAHYLIQPELHH 447

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           ++         +     +EE   LI    K   +    +              EY   D 
Sbjct: 448 NMDYLAEVF-LNYQTIHIEE---LIGPKGKNQKNMRDLNPKDV---------YEYAAEDA 494

Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T  L   L P            + E  L  +   +   G  +D + + +  ++  +  
Sbjct: 495 DITLRLKNVLEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERM 554

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           +K +E I +       +      +   LF    I        T + + S   +  +    
Sbjct: 555 RKYEEKIYEEAAEKF-NISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKN 613

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +     +   + KL     + L   ++   G +  +      + TGR S      QN+P
Sbjct: 614 PIVENILNYRGMKKLLSTYVDNLPTLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIP 672

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R C I   G     AD + IE R++A 
Sbjct: 673 VRTDD------------------------GKEIRKCFIPEPGCLFFSADYSQIELRIMAH 708

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           ++G++  I+AF  G DI+  T AK ++  IDKV+  QR   K     + Y     G A+ 
Sbjct: 709 LSGDENMIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYGITTYGLAQR 768

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQ 486
                S     +  + +       + +                          SH+  ++
Sbjct: 769 MNISNSEAKDLITDYFKTFPKVQAYMEKAKEAARKNGYAETIFGRRRYLADINSHNGTVR 828

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535
                 A+   + G+  +++K A             K + +LQ+  +L        +E 
Sbjct: 829 GFAERNAINAPIQGSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNFSVYPEEKEK 887


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 98/572 (17%), Positives = 194/572 (33%), Gaps = 85/572 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS- 107
           ++S + S L   L DE +  + H+   E I        +I        +++      P+ 
Sbjct: 365 KESDIISPLKDILEDEHIRIIGHDLKKEII---HFYPYEIHIANLYFDTMVGEYLLNPAK 421

Query: 108 -SLKNACLALNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
            S     LAL +       EE     GK  ++ +     +         NHV+      +
Sbjct: 422 SSYLLKDLALEYLGEEIIDEEKIVGKGKNQLSLWAAPENE---VKALLCNHVKVIAELAK 478

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           Y +  +E  + + K      + E  L  +  ++   G ++D +++L L+    +   KL 
Sbjct: 479 YIQEKIE-DQGIHKLYY---EVELPLVEVLASMEFLGIKVDRNMLLALEVEFKEIIDKLT 534

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            +I  L   I  +      L   LF   G+     ++       +   + +L     +  
Sbjct: 535 SEIYSLAG-ISFNINSPKQLGEVLFEKLGLPPTKKTKTG--YSTNADVLEKLQDQHEIIP 591

Query: 282 LASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             S    + KL T     L   ++    R+  +      + TGR S      QN+P    
Sbjct: 592 KISEYRQVTKLKTTYVDGLLSIINPVTNRIHSSFN-QTVTATGRISSTEPNLQNIP---- 646

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   I+  G + + AD + IE RVLA IA +
Sbjct: 647 --------------------VRLEMGRRLRKVFISKEGHEFIDADYSQIELRVLAHIAKD 686

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
           D  I AF   +DI+  T ++ F  P+++V+   R   K +   + Y     G ++     
Sbjct: 687 DNLIDAFIKNQDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVYGISDFGLSQNLNIP 746

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S     ++ + +   S   +                         + +S +  ++    
Sbjct: 747 VSKAKKYIESYFEKYPSIKEYMHNIVEEGKEKGYVVTLLNRRRYLPELKSSNFNIRSFGE 806

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A+   + G+A +++K A  A +  +     D         +    +    +   P   
Sbjct: 807 RIAMNTPIQGSAADIIKIAMIAVYNRLKAENYD--------AKLILQVHDELIIECPENE 858

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +    + +   + ++  +V   +K D SY N 
Sbjct: 859 IEEVSKILKESMENAIEMVVP-LKVDLSYANN 889



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642
            R++G ++  N  +Q  + DI+   M           YD  ++L VHDE++ E P+    
Sbjct: 801 IRSFGERIAMNTPIQGSAADIIKIAMIAVYNRLKAENYDAKLILQVHDELIIECPENEIE 860

Query: 643 SVGTL 647
            V  +
Sbjct: 861 EVSKI 865


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/672 (18%), Positives = 224/672 (33%), Gaps = 150/672 (22%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAM-PSDLLQ 59
           D ET S       L  +G            C +  +   +       T+   +    +L+
Sbjct: 178 DTETTSLEPRDANLVGIG------------CCWGSELSDLAYIPLNHTQGEMLNIEQVLE 225

Query: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            LR     E       N+ F+R++  ++ GI +    +  T + +      SS     L+
Sbjct: 226 ALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGVVF-DTMLASYIINPESSHNLTDLS 283

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +   L  + +  + +    K   D           +  +  F        +  +++ K
Sbjct: 284 LRYLPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQI-----TQKMQDILK 338

Query: 176 RLIPLSD----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L  L+D     E+ L  +   +  +G RID D + +L + + +    L++   +    +
Sbjct: 339 DLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKTSHQAAGEV 398

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +D     +         + + +L  D  +         + K
Sbjct: 399 F-NLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVINSILEYRTLSK 457

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E V SD GR+         + TGR S      QN+P +            
Sbjct: 458 LKSTYVDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRT----------- 505

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   I  +G  LV AD + IE R+LA ++ E   I+A+   
Sbjct: 506 -------------EFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTN 552

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D++  T    F+   D ++ E+R +GK++   + Y  GA+                   
Sbjct: 553 QDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQ------------------- 591

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                     FA +  +  TA +     + +++ GV +    L 
Sbjct: 592 -------------------------RFAREVGVSATAGKQFIDRFNSQYPGVFEY---LE 623

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-DCSYLNTAT 584
                 + +G                       ++     RR  +  +KG D   LN   
Sbjct: 624 SQKLAAINQG-----------------------YVETILGRRRYFESLKGRDRDRLNYQD 660

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTP 640
            Q++R            +Q  S DI+   M    +    Y   ++L VHDE+V E P + 
Sbjct: 661 EQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQVHDELVFEVPLSE 714

Query: 641 YFSVG-TLCSLM 651
           +  +   + S M
Sbjct: 715 WEELEYQIKSTM 726


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/492 (18%), Positives = 157/492 (31%), Gaps = 74/492 (15%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
            LA        L      L   E +        L+  +     ++ P    R    +   
Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTHPEGVARRYGGE--- 399

Query: 158 LFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            F E        +  LF+ L P           + ER L  +   +  RG R+D+ L+  
Sbjct: 400 -FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L   + +E ++L+ ++ +L      +      L   LF   G+  V  +E T K   +  
Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQG 517

Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
            +  L     +  L      + KL     + L   V    GRL        A+ TGR S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLSS 576

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +                              +R   +A  G  L+ AD +
Sbjct: 577 SDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADYS 612

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++G++   + F  G+DI+  T A  F      V ++ R   K +   + Y 
Sbjct: 613 QIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKMRRAAKTVNFGVLYG 672

Query: 443 GGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------- 484
             A    +            ++++ Q+      + +    E                   
Sbjct: 673 MSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPD 732

Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVVQ 533
                  +++     A    + GTA +L+K A       +      L   + +     V 
Sbjct: 733 LASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVP 792

Query: 534 EGGSISARRVAN 545
           E  +  A+ +  
Sbjct: 793 EDRAEEAKALVK 804



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           ++   M          G  ++L VHDE+V E P+        L   +M
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/672 (18%), Positives = 224/672 (33%), Gaps = 150/672 (22%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAM-PSDLLQ 59
           D ET S       L  +G            C +  +   +       T+   +    +L+
Sbjct: 387 DTETTSLEPRDANLVGIG------------CCWGSELSDLAYIPLNHTQGEMLNIEQVLE 434

Query: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            LR     E       N+ F+R++  ++ GI +    +  T + +      SS     L+
Sbjct: 435 ALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGVVF-DTMLASYIINPESSHNLTDLS 492

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +   L  + +  + +    K   D           +  +  F        +  +++ K
Sbjct: 493 LRYLPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQI-----TQKMQDILK 547

Query: 176 RLIPLSD----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L  L+D     E+ L  +   +  +G RID D + +L + + +    L++   +    +
Sbjct: 548 DLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKTSHQAAGEV 607

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +D     +         + + +L  D  +         + K
Sbjct: 608 F-NLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVINSILEYRTLSK 666

Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L E V SD GR+         + TGR S      QN+P +            
Sbjct: 667 LKSTYVDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRT----------- 714

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   I  +G  LV AD + IE R+LA ++ E   I+A+   
Sbjct: 715 -------------EFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTN 761

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D++  T    F+   D ++ E+R +GK++   + Y  GA+                   
Sbjct: 762 QDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQ------------------- 800

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                     FA +  +  TA +     + +++ GV +    L 
Sbjct: 801 -------------------------RFAREVGVSATAGKQFIDRFNSQYPGVFEY---LE 832

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-DCSYLNTAT 584
                 + +G                       ++     RR  +  +KG D   LN   
Sbjct: 833 SQKLAAINQG-----------------------YVETILGRRRYFEGLKGRDRDRLNYQD 869

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTP 640
            Q++R            +Q  S DI+   M    +    Y   ++L VHDE+V E P + 
Sbjct: 870 EQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQVHDELVFEVPLSE 923

Query: 641 YFSVG-TLCSLM 651
           +  +   + S M
Sbjct: 924 WEELEYQIKSTM 935


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 175/519 (33%), Gaps = 80/519 (15%)

Query: 41  PVKLWDRTEQSAM-----PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           P +      +  M      S L   L DE +   AHN+ +   L     G  +    +  
Sbjct: 366 PAEFIGSASEGQMFAAEGHSGLAALLGDEKISKTAHNAKYLMNLLLSA-GQAVKGLDF-D 423

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR------FCKGSIDSPPYDCTR 149
           T + A   G       A   L F     ++ + + ++ R      F +  +         
Sbjct: 424 TMIAAHLLG---EKNLAIKDLVFEHFGIEIADIENILTRNGKKASFSEVQLSEAAQLAAD 480

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208
                 ++L G +  +  E       RL+ L +  E  L  +   +   G  +D DL+  
Sbjct: 481 YT----FRLKGIFAAQLAET------RLMDLFARVEMPLLPILLGMERTGIMLDTDLLKA 530

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           + E   ++  KL+EDI         +      L   LF    + ++  ++    T   +L
Sbjct: 531 MAEKTGRQIFKLEEDIYARAGHNF-NIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVL 589

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                     DLIL            L+TL   V+   R   T      + TGR S    
Sbjct: 590 EELKGKHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEP 649

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                          G     +R   IA  G  L+  D + I+
Sbjct: 650 NLQNIP------------------------VRGEMGREIRRAFIAPPGTVLLAGDYSQID 685

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA ++ +   I+AF + +DI+  T A+  N P  KV+KEQR + K +   + Y   +
Sbjct: 686 LRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSKVTKEQRRLAKTVNFGVIYGMSS 745

Query: 446 ----KVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAES 480
               +  +         ++ + +     + +                         +  S
Sbjct: 746 YGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEIKQQVRTQGYVETLLGRRRYIPEINS 805

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  +++     A+   + GT+ +++K A     + + +
Sbjct: 806 PNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKLKE 844


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/543 (16%), Positives = 172/543 (31%), Gaps = 101/543 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +     +E +  V  N  ++  + K              T +++       S     LA 
Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNYDVTFKGP--IEDTMIMSYVIDSTESHGMDKLAK 436

Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            + +H     E   GK +    F + SID                    Y   D + T +
Sbjct: 437 KYLDHDCISFESVVGKGVKQLTFDQVSIDDA----------------YLYASEDADVTLQ 480

Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L++ L               + E    L    I   G  I   ++    + +  +   L+
Sbjct: 481 LYEHLNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLE 540

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            +  ++ +     S     LR  LF    I     +  T     S   + +L+ D  L +
Sbjct: 541 NEAYQIAEQPFNLS-SPKQLREILFDKMKIIPTKKTP-TGTPSTSEDVLEELSHDHALPK 598

Query: 282 LASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +     ++ KL     + L + ++ +  R+  +      + TGR +      QN+P + +
Sbjct: 599 VILEHRSLSKLKNTYTDKLPKMINLNTKRIHTSYN-QAVAITGRLASSEPNLQNIPIKTK 657

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   IA+   ++V  D + IE R++A ++ +
Sbjct: 658 ------------------------EGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKD 693

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTM 451
              + AF   EDI+ +T +  FNT    VS EQR   KV+   L Y   A    +     
Sbjct: 694 PGLLDAFNQNEDIHRSTASAIFNTNDASVSSEQRRFAKVINFGLIYGMSAFGLSQTLNID 753

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKD---- 496
            +     + Q+ +       + D            E      LW+        ++     
Sbjct: 754 RNSAKNFIDQYFEKYPGVKNYMDQGKLVAKEQGYVETVFGRRLWVPLINSSNGIQRAAAE 813

Query: 497 ------KLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISA 540
                  + GTA +L+K A     Q           ++Q+  +L         +      
Sbjct: 814 RAAINAPMQGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAELDIIKTEI 873

Query: 541 RRV 543
            ++
Sbjct: 874 PKI 876



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNP 655
           Q  + D++   M N        K    +++ VHDE+V E P+     +   +  +M+   
Sbjct: 822 QGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAELDIIKTEIPKIMSNVA 881

Query: 656 SWAKGLPLKAE 666
           +    +PL A+
Sbjct: 882 T--LDVPLIAD 890


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 142/419 (33%), Gaps = 75/419 (17%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +L ++       E  L  +   +   G ++  + +  L + + ++  +L E+I KL   
Sbjct: 453 IKLQEQEYLYYSVELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKLAGE 512

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLA 283
              +      L   LF   G+  V  ++         L+ +  H  + ++     L +L 
Sbjct: 513 RF-NLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEKLAEHEIVAKVLVYRQLAKLK 571

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           S+ +     + L E +    GRL  T    G + TGR +      QN+P           
Sbjct: 572 STYT-----DALPELIDPATGRLHTTFLQAG-TATGRLASAEPNLQNIP----------- 614

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   +A      L+ AD + IE RVLA ++ +    +A
Sbjct: 615 -------------VRDSLGRRIRQAFVAEGPDYVLLSADYSQIELRVLAHLSEDPGLCEA 661

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F  GEDI+  T A+ F     +V+ E RA  KV+   + Y       ++  K        
Sbjct: 662 FVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMSDYGLSQELKIEPGEAHE 721

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKD 496
            ++++ +       F +   A++                                 A+  
Sbjct: 722 YIERYFRRYPRVKQFIERVIAQAREKGYVTTILNRRRYIPEILSSNRNQRQLGERLAINT 781

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
            + G+A +L+KKA    H+           +LQ+  +L         E  +   +    
Sbjct: 782 TIQGSAADLIKKAMVDIHRQLKGQGFKCRMILQVHDELLFEVPKEELEKVAPIIKSTME 840



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 19/225 (8%)

Query: 446 KVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           + F        L    +SQ  ++  +   +        +  +D +   A   ++ G + +
Sbjct: 625 QAFVAEGPDYVLLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHARTA--AEIFGVSPQ 682

Query: 505 LVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
            V    RAK    + G++    D        ++ G    A            R K+ +  
Sbjct: 683 EVTPEMRAKAKVVNFGIVYGMSDYGLSQELKIEPG---EAHEYIERYFRRYPRVKQFIER 739

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMR-ERTYGGKLTENIV-QAISRDILCEGMKNAT 618
           V+  +R   Y     +            R +R  G +L  N   Q  + D++ + M +  
Sbjct: 740 VIAQAREKGYVTTILNRRRYIPEILSSNRNQRQLGERLAINTTIQGSAADLIKKAMVDIH 799

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS 656
           +          ++L VHDE++ E P      V   + S M +   
Sbjct: 800 RQLKGQGFKCRMILQVHDELLFEVPKEELEKVAPIIKSTMEQALP 844


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 110/613 (17%), Positives = 211/613 (34%), Gaps = 99/613 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            ++ +D ET SP+P+    V        ++A      +                 +P ++
Sbjct: 343 KQISLDTETDSPEPMRANLVGISFCMDEKKAYYLPLGHQ----------LAVNLPLP-EV 391

Query: 58  LQYLRDE--TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           L++L D     + + HN  F+ I+  +     +     +  ++LA     P +L  +   
Sbjct: 392 LRHLEDALKGKLLLGHNLKFDLIVLAR---NGLELDNPLFDTMLAAYILDPGTLNYSLET 448

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA---NHVQAWQLFG--EYCKRDVE-- 168
              +E   KM     LI +  K        +  +A   +   AW ++      +R V+  
Sbjct: 449 CALNELNYKMIPISDLIGK-GKNQSTFDLVEPEKACIYSAEDAWAVYKLYPVYRRKVDFS 507

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               LF  +      E  L  + Q +   G  ID  ++ ++   I  E K L + I    
Sbjct: 508 VMANLFDTI------ELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIYAFA 561

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +   T  L   LF    +     ++    T  S+L    I      +I+     S
Sbjct: 562 GYEF-NINSTQQLAKLLFEEKKLPYGRKTKTGYSTDNSVLEELAIDYEIAGIIIQYRQLS 620

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 ++ L + ++   GR+  +      + TGR S      QN+P +           
Sbjct: 621 KLQSTYVSALPKMINPQTGRIHSSFN-QTVTSTGRLSSSNPNLQNIPVRT---------- 669

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R    A + + L+  AD + IE R+LA ++ ++  I+AF 
Sbjct: 670 --------------EIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFK 715

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
              DI+    AK FN  I+KV+ +QR   K +   + Y  G    ++      +     +
Sbjct: 716 QDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQRKLSRELGISLNEAKDII 775

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
             +     S   F +    ++                      +  ++ +    AV   +
Sbjct: 776 DGYYAQFPSIRNFINQCVNKARQQHYAETLFGRRLYLPNIDSKNQGLKSEAERIAVNMPI 835

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            GTA +L+K A    H+ +     D  E    ++Q    +    +  V +  +   K  V
Sbjct: 836 QGTAADLIKIAMLNIHKQI-----DKREDIKMILQ----VHDELLFEVQQEALEETKNIV 886

Query: 559 HIVLPSSRRLVYS 571
              + S+    Y+
Sbjct: 887 KTCMESALPPKYA 899


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 148/410 (36%), Gaps = 70/410 (17%)

Query: 175 KRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +RL PL  + ER L  +   +   G  +D   +  +     +  + L+  I         
Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF- 548

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +   T  L   LF+   + +V   +           + +LA+   L RL     ++ KL 
Sbjct: 549 NVASTRELAQVLFVELELPVVKRLK--TGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLK 606

Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L + V   DGR+  T    GA+ TGR S      QN+P +              
Sbjct: 607 GTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRT------------- 652

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   +A  G +L+ AD + IE R+LA  + +   ++AF + ED
Sbjct: 653 -----------ELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRED 701

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++  T A+ F    ++V+ +QR I KV+   + Y     G ++      S     + ++ 
Sbjct: 702 VHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYF 761

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   + +W   E+                      +  +++     A+   + GTA
Sbjct: 762 TRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIGAPNPALRNAAERTAINTPIQGTA 821

Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            ++VK A           R   + +LQ+  +L         E      RR
Sbjct: 822 ADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELEPVEALVRR 871



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 21/80 (26%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS------ 649
           +Q  + DI+   M          +    ++L VHDE+V E P+     V  L        
Sbjct: 817 IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELEPVEALVRREMEGA 876

Query: 650 ---------LMTKNPSWAKG 660
                     +    +WA+G
Sbjct: 877 ARLKVPLEVQVGHGQTWAEG 896


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/612 (16%), Positives = 196/612 (32%), Gaps = 105/612 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSDLLQYL 61
           D ET    PL           A +   A++W+       P+   DR     +   L  + 
Sbjct: 378 DTETTGLDPLT----------AELVGIAFSWEKGKGFYLPIPE-DREAAQVIVDQLKPFF 426

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSE 120
              ++  V  N  ++  +  K     +  K  +  ++LA              LA  +  
Sbjct: 427 ESASIEKVGQNLKYDIKVLDKY---GVDVKGPMFDTMLAHYLINPDMRHNMDVLAETYLN 483

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
           +    +    LI +  K  +     D  +           EY   D + T +L +   P 
Sbjct: 484 YTP--QSIVELIGKKGKNQLSMRDVDLEKQ---------KEYAVEDADITLQLKEHFTPE 532

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      D E  L  +   +   G  +D D +  L   +  +  +L++DI ++   
Sbjct: 533 LASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVAGE 592

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L + LF    +        T +   +   ++ LAKD  + +       + 
Sbjct: 593 EF-NIGSPKQLGVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAIIQNVLDYRGLS 651

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L   V +  +   T      + TGR S      QN+P +            
Sbjct: 652 KLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDPNLQNIPIRTER--------- 702

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             VR   I       L+ AD + IE R++A ++ E+  I AF +
Sbjct: 703 ---------------GRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIAAFQS 747

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           GEDI+ +T AK FN  ++ V++EQR+  K +   + Y     G +             + 
Sbjct: 748 GEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELID 807

Query: 461 QFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLI 499
            +         +   +   +                         ++      AV   + 
Sbjct: 808 TYYATYPKLKAYMQDQVDFARENGYVETVLGRRRYLKDINSSNAVVRGAAERNAVNAPIQ 867

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G+A +++K A    H+          E   C  +    +    V ++    +   K+ + 
Sbjct: 868 GSAADIIKIAMINIHKKF--------EEMNCKSKMLLQVHDELVFDIHNDELEDMKKLIQ 919

Query: 560 IVLPSSRRLVYS 571
             + ++ ++   
Sbjct: 920 GEMQNAYKMTVP 931


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/492 (14%), Positives = 167/492 (33%), Gaps = 61/492 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +       +++ DE+ +   +++    +  ++  GID+    +    +++       
Sbjct: 348 AEDALSSEAFKKWVEDESKIKHVYDAKRSIVALRRY-GIDLRGTDF-DLLLVSYLLNPSD 405

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           ++++                 +   A + KG+    P +   A H+       +      
Sbjct: 406 TVEDFASV----AKTHDYGNVETDEAVYGKGAKRKLPEEKRYAEHISRKAEAIDALCEPC 461

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +   +L      E  L L+   +   G ++D D + ++ E       ++++ I  +
Sbjct: 462 TKALKNNGQLELFEQLELPLSLILADMEYTGVKVDTDRLKEMGEEFKLRLHEIEQRIYSM 521

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF   G+ ++  ++    T   +L            IL+    
Sbjct: 522 AGTEF-NINSPKQLGVILFEKMGLPVIKKTKTGYSTSADVLEKLEPAHEIVREILHYRQL 580

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L + V  DG++         ++TGR S      QN+P +           
Sbjct: 581 GKLQSTYIEGLLKVVHQDGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR----------- 628

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G  +  +D + +E RVLA I+G++  I+AF 
Sbjct: 629 -------------MEEGRKIRQAFVPSEEGWLIFSSDYSQVELRVLAHISGDEKLIEAFR 675

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            G DI+  T  + F+   ++V+ E R   K +   + Y     G ++         G  +
Sbjct: 676 EGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVYGISDYGLSQNLGISRKEAGEFI 735

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                       +  S +  ++      A+   +
Sbjct: 736 KRYFASYPRVKEYMDEIVREAKQKGYVSTLLKRRRYLPEITSRNFNLRSFAERTAMNTPI 795

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 796 QGSAADIIKKAM 807


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 187/553 (33%), Gaps = 92/553 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPS 55
           + +L ID ET S +          A  A +   A++W+       P  L D T    +  
Sbjct: 352 LERLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLE 401

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   LR      V  N  ++ ++  +  G+++P   +  T V               LA
Sbjct: 402 RLAPILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLA 458

Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEA 169
             +  +        +  G+   +       +  PY C   +     QL        D   
Sbjct: 459 RQYLRYQMVAITELIGSGRDQKSMRDVSIDEVGPYACEDTDIAL--QLADVLAAELDRHG 516

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            R + +      + E  L  +   +   G  ID  ++ ++ + +  E  +L+  I ++  
Sbjct: 517 LRHIAE------EMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVAG 570

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF   G+     +  T +     S + +LA    L  L      +
Sbjct: 571 VEF-NIGSPQQLADVLFKKLGLKPRART-STGRPSTKESVLQELATQHPLPGLILDWRHL 628

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
            KL     + L   +    GR+  T      + TGR S      QN+P R E   E    
Sbjct: 629 AKLKSTYVDGLEPLIHPETGRIHTTFN-QTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +   G KL+ AD   IE R+LA ++G++   +AF
Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
             G+DI+  T A+ F  P ++V+ EQR   K++   + Y     G A+  +         
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           ++++ +     + +      E+      +                          AV   
Sbjct: 783 IEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842

Query: 498 LIGTACELVKKAW 510
           + GT  +++K A 
Sbjct: 843 IQGTQADMIKLAM 855


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 157/483 (32%), Gaps = 91/483 (18%)

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
              L  DIP  RW     LA     P         L                        
Sbjct: 537 SHALWRDIPGDRW-FDLGLAAYLLDPEERDYGWPRLAARWGDMLD--------------- 580

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                  T    + A ++      R   A+ +   R +     E  L  +   + + G  
Sbjct: 581 -----RSTDNPGLLALEMAQGMAGRLAGASLDTLMRTL-----ELPLVPVLADMEEAGIA 630

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
           +D        + +  E  ++ +++ K   G   + R    L   LF   G+  V  + G 
Sbjct: 631 VDRTAFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGG 689

Query: 260 ---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T +  L   +      DLIL+           L  L + V   GR+  T     A+ 
Sbjct: 690 QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDDAGRIHSTFNQL-ATA 748

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                        G     +RSC  A+ G  L
Sbjct: 749 TGRLSSSNPNLQNIPAR------------------------GDLGRRMRSCFTAAEGNLL 784

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE RVLA ++ +   + AF  G DI+  T    ++T  + V+ +QR   K + 
Sbjct: 785 VSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTIN 844

Query: 437 LALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------- 483
             L Y  G +      +   +     ++++   ++    F D  +A +            
Sbjct: 845 FGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGR 904

Query: 484 ------------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLW 521
                        ++ Q    A+   + G+A +++K A  A H            +LQ+ 
Sbjct: 905 RRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVH 964

Query: 522 KDL 524
            +L
Sbjct: 965 DEL 967


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 94/544 (17%), Positives = 182/544 (33%), Gaps = 81/544 (14%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW--ICTSVLARTN 103
           D+ + +     L   L    ++ +  +  F  ++  +  GI + +     + + VL    
Sbjct: 486 DQVKHADAIDALRPVLESSGILKIGFDVKFTAVMLAQH-GITLRNTDDAQLISYVLDAGR 544

Query: 104 GLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFG 160
           G     SL          +    +  GK  I         + P     A+  ++ W++  
Sbjct: 545 GSHGLESLAERWFGHAMLKEGELLGSGKGKITFDQVPIDKAAPLSAEGADMALRVWRVLK 604

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                  E    +++ L      ER L  +   +  RG  ID  ++ +L    AQ   ++
Sbjct: 605 PRLV--AEHMTTVYETL------ERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARV 656

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279
           + +I ++    + +      +   LF    +     ++ T     +   + +LA+    L
Sbjct: 657 EAEIQEIAGEPV-NVGSPKQIGDILFGKMSLPGGTKTK-TGAWSTTAQVLDELAEQGHDL 714

Query: 280 NRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +       + KL     + L E V+       T     A+ TGR S      QN+P + 
Sbjct: 715 PKKILEWRQVSKLKSTYTDALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRT 774

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA+ G KLV AD + IE R+LA IA 
Sbjct: 775 ED------------------------GRKIRRAFIATPGHKLVSADYSQIELRLLAEIAD 810

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
                +AF +G DI+  T ++ F  PI  +  E R   K +   + Y     G A     
Sbjct: 811 IPVLKQAFRDGLDIHAMTASEMFGVPIKGMPSEIRRRAKAINFGIIYGISAFGLANQLGI 870

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                   ++++ +       + D                     +   ++ +  ++   
Sbjct: 871 AREEASAYIKKYFERFPGIRAYMDETRDFCRQHGYVTTLFGRKCHYPDIKASNASVRAFN 930

Query: 490 PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSIS 539
              A+  +L GTA +++++A               Q +LQ+  +L         E     
Sbjct: 931 ERAAINARLQGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEATLPV 990

Query: 540 ARRV 543
            + V
Sbjct: 991 VQHV 994


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 179/551 (32%), Gaps = 83/551 (15%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSDLLQYLR----DE 64
             L   G+   AE A I   A +W+       PV+     + +  P  +L++L+    D 
Sbjct: 322 VDLETTGL-KPAE-AEIVGWAISWEKHRGFYIPVE-GPSGQLALDPQYVLEHLKPILEDP 378

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            ++    N  ++ ++  +              +    + G      +       +  +  
Sbjct: 379 EILITNQNIKYDMVVLMRVGVFLQGVSIDPMVASYLISAGERGHSLDKLSERYLNHTMIP 438

Query: 125 MEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           + E    GK     F         Y    A    AWQL      +D      L++    L
Sbjct: 439 ISELIGSGKQQKKMFEVDVDKVAEYAVEDAEI--AWQL--SRILQDELKHAGLWELYWEL 494

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              ER L  +   +   G ++D   + +  +L+ +    L  +I ++       +     
Sbjct: 495 ---ERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIAGHEFNIA-SPLQ 550

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           LR  LF    + +   ++         S + +LA    L    +    + KL     + L
Sbjct: 551 LRTVLFEELNLPVFKKTK--TGPSTDQSVLEKLAPLHALPARITEHRHLSKLKSTYLDAL 608

Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
              V+   GR+  +     A+ TGR S      QN+P +                     
Sbjct: 609 PGLVNPETGRIHASFNQVVAA-TGRLSSSDPNLQNIPVRT-------------------- 647

Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   I      +L+ AD + IE R+LA ++ +    +AF  G DI+    
Sbjct: 648 ----QEGRQIRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFREGADIHTAVA 703

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           +  F  P D+V  + R   K +   + Y     G ++      S     ++ +    +  
Sbjct: 704 SDIFRVPHDQVDSDMRRTAKAVNFGVIYGQSPFGLSEAIGIPQSEAAGFIEDYFVRYQGV 763

Query: 470 STFED------------------WEQAESHHLWMQDQY---PEFAVKDKLIGTACELVKK 508
             F D                    + +     +Q Q       A+   + G+A +L+K+
Sbjct: 764 REFLDQILEDCAKQKFVETICGRKREIQGVRGGVQKQLNMPERTAINTVIQGSAADLIKQ 823

Query: 509 AWRAKHQGVLQ 519
           A       + Q
Sbjct: 824 AMLNVSDRIKQ 834



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-----GT 646
              ++Q  + D++ + M N        ++   +++ +HDE+V E P T   ++       
Sbjct: 809 INTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQIHDELVFEVPLTALDTLGLIVREE 868

Query: 647 LCSLM 651
           + S M
Sbjct: 869 MESAM 873


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 101/573 (17%), Positives = 178/573 (31%), Gaps = 114/573 (19%)

Query: 7   DIETRSPQPL----------PKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSA 52
           D ET    PL           K G   Y    A             ++P  +        
Sbjct: 378 DCETTGLNPLYDSLVGFSLSLKAGTGIYVPLKAPAPE-------LGEQPFAVMPLAAAKK 430

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109
           + + L     ++ +  V HN  F+  + +          R   T + A       L   L
Sbjct: 431 LLARLWN---NKELTLVLHNGKFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSFGL 487

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           +N   A L       K    K      C  +  S P                 Y   D +
Sbjct: 488 ENLTEAQLGLQGLDYKDVVPKG-----CTFAAVSLPQATA-------------YAAEDAD 529

Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T +L+    P  +           E  L  L   +  +G  +  + +    E +A    
Sbjct: 530 FTLQLYHVYKPALEQANLTTLFETLEMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLA 589

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           + + +I KL       +     L+  LF    +     ++    + +S   + +LA    
Sbjct: 590 RDEAEIYKLVGHPFNIA-SPKQLQEVLFTERKLPTGKKTKTGYSTDIS--VLEELAAIDE 646

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           L        A  KL     + L     ++GR+  +    G + TGR S      QN+P +
Sbjct: 647 LPAKILDYRASAKLKSGYADALPLLADANGRIHTSFIQTG-TATGRLSSRDPNLQNIPIR 705

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                   G     +R    A++G KL+ AD A IE  +LA  +
Sbjct: 706 ------------------------GEEGRKIRKAFYAADGCKLISADYAQIELVILAHFS 741

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            ++  +KAF  G D++  T A  FN P++ V  + R I KV+   + Y       A   +
Sbjct: 742 QDENLVKAFRQGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLANQLR 801

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQ 488
              +     + ++       + F +                          S +   +  
Sbjct: 802 ISRTEAADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGRRRYIRAINSRNQTQRAA 861

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               A+   + G+A ++VK A     + + +  
Sbjct: 862 AERIAINTPIQGSAADIVKTAMLHVDRALKRQH 894



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
           +Q  + DI+   M +  +          ++L VHDE++ E PD+   SV  L   
Sbjct: 871 IQGSAADIVKTAMLHVDRALKRQHLSAHLLLQVHDELILEAPDSEVDSVKALLKQ 925


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/544 (15%), Positives = 173/544 (31%), Gaps = 94/544 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113
            +    L +E ++ +  N  ++ ++ K      I  K  +  ++LA       +      
Sbjct: 413 EEFRPVLENENIVKIGQNIKYDMLILK---WYGISVKGRLFDTMLAHYLIDPDTRHNMDV 469

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L+ N+  +               +G++   P            +   +Y   D + T +L
Sbjct: 470 LSENYLNYSPISITTLIGPKGKSQGTMRDVPV-----------EKVVDYAAEDADITLQL 518

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                PL           + E  L  +   I   G RID+D ++   + +  + +K ++ 
Sbjct: 519 ANVFEPLLKQLNAEKLATEVENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQS 578

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----I 278
           +          +     L   LF    +D       T +       +  LA        I
Sbjct: 579 VYDKCGIKFNLA-SPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQDI 637

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+           ++ L   V+   GR+  +      + TGR S      QN+P +    
Sbjct: 638 LDFRQLQKLKSTYVDALPLLVNPKTGRVHTSFN-QAVAATGRLSSNNPNLQNIPIRTER- 695

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                                     VR   I       L+ AD + IE R++A I+ E+
Sbjct: 696 -----------------------GREVRKAFIPRDENHILLSADYSQIELRIIADISKEE 732

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452
             + AF NG DI+  T A+ +   I++V+  QR   K +   + Y   A    +      
Sbjct: 733 NMLDAFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIYGQSAFGLSQNLGIPR 792

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 ++Q+         +       +                      +  ++     
Sbjct: 793 KEAAEIIEQYFTQYPGIKRYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGFAER 852

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLT-EGFACVVQEGGSISA 540
            A+   + G+A +++K A    H+ +          +Q+  +L  +     V+    I A
Sbjct: 853 NAINAPIQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVLKSEVEAMKKIIA 912

Query: 541 RRVA 544
            R+ 
Sbjct: 913 HRMK 916


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 169/483 (34%), Gaps = 74/483 (15%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SSLKNACLALNFSEH 121
            + H+     I+FKK  GI++    +  T V A              +   CL  N   +
Sbjct: 391 KIGHDLKTAWIVFKKH-GIELRGIAF-DTMVAAYLLDPGKQNYGIDRVAAECLGENIDSY 448

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--ELFKRLIP 179
                +GK+ +      +ID             A +      KR ++ +R  ELF+++  
Sbjct: 449 EDVTGKGKSQVGF---DTIDIGRAAAYSCAAADAARRMHPVLKRKLDESRLTELFEKI-- 503

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  L  +   +  RG   D + +  L     +   +  + I  L      + +   
Sbjct: 504 ----ELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAKEKF-NIQSPK 558

Query: 240 ALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF   G+ +V  ++    T  ++L    +     D +L     +       + L 
Sbjct: 559 QLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVFRTLAKLKGTYADALG 618

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + ++   GR+  +     A+ TGR S      QN+P +                      
Sbjct: 619 KLINPRTGRIHTSYNQTVAA-TGRLSSSDPNLQNIPIRT--------------------- 656

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +RS  I + G  L+ AD + IE R+LA  + ++  ++AF + EDI+  T A+
Sbjct: 657 ---EEGRKIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDDEDIHRRTAAE 713

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471
            F     +V+ E R   K +   + Y  G    A+  +         + ++ Q  +    
Sbjct: 714 MFGVSPIEVTPEMRRQAKTINFGIIYGMGPFGLAQRLRISTKTARTAIDKYFQGYRGVRR 773

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F D                       + +S +  ++      A+   L GTA +L+KKA 
Sbjct: 774 FIDTTIELARRLGYSETLLGRRRFIPELQSRNKTIRQLGERLAINTPLQGTAADLIKKAM 833

Query: 511 RAK 513
              
Sbjct: 834 IDA 836



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN---TATSQLMRERTYGG 595
           +AR   +      R  +R +   +  +RRL YS+             + ++ +R+   G 
Sbjct: 756 TARTAIDKYFQGYRGVRRFIDTTIELARRLGYSETLLGRRRFIPELQSRNKTIRQL--GE 813

Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLC 648
           +L  N  +Q  + D++ + M +A       G   V+   VHDE+V ETP     +   L 
Sbjct: 814 RLAINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQELV 873

Query: 649 -SLMTKNPSWAKGLPLKAE-GY 668
             +M     W   +PLK E G+
Sbjct: 874 RRVMEDV--WKLDVPLKVELGW 893


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 103/588 (17%), Positives = 187/588 (31%), Gaps = 97/588 (16%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL----- 57
           ID ET S       G+        I+LCA   D     P+   + T  + +P  L     
Sbjct: 318 IDTETTS-LDARTAGL------VGISLCA-ELDRAWYIPLAHIEAT-GTPVPGQLPISEV 368

Query: 58  ----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L    ++ V HN  ++  + K   G++I        +      G    L + C
Sbjct: 369 MAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLLEKGRTLKLDDLC 428

Query: 114 L--ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEAT 170
               L  +     + E K   A       ++  Y C      +  WQ FGE         
Sbjct: 429 AEIGLELTSFAEVVAEDKRADAFAYVALKEACHYSCEDVYGALSLWQDFGEKLSD----- 483

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + L        D E  +  +   +   G  +D  ++++L     ++  +L   I +    
Sbjct: 484 KALDGLFY---DVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGELAATIYQEVGH 540

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L + LF   G+     ++           + +LA    +  L      I 
Sbjct: 541 EF-NISSPKQLGVILFEELGLPHGRKTKTGF--STDVKVMEKLASQHPVPALILKYRTIA 597

Query: 291 KLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL +      L       GR+  +      + TGR S      QN+P +           
Sbjct: 598 KLKSTYVDKLLLLKNPETGRIYTSFN-QTITATGRLSSSNPNMQNIPIR----------- 645

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                            + +R   +   GK  + AD + I+ RVLA  +G+D   +AFA 
Sbjct: 646 -------------MEEGNRIRRAFVPEAGKVFLAADYSQIDLRVLAHYSGDDALTRAFAA 692

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G+DI+  T A+ F+     V+ E R + K +   + Y       A+            + 
Sbjct: 693 GQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMSAFGLAQQLGIGRKEAQRFID 752

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++         F                           ++ +  M++     A+   + 
Sbjct: 753 RYFHLYAGVKQFMIDIVEQTRERGYATTLLGRRRAVPDIDAKNKGMREFAERMAINTPIQ 812

Query: 500 GTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISAR 541
           GTA +++K A  A  + +       ++   + +     V E      R
Sbjct: 813 GTAADIIKCAMIAVEKKLAAAGLGAKMLLQIHDELVFEVSEAELAETR 860



 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 20/175 (11%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT-------EGFACVVQEG-GSISARRVA 544
           A +D    TA EL   +    +  + ++ K +          F    Q G G   A+R  
Sbjct: 692 AGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMSAFGLAQQLGIGRKEAQRFI 751

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL---NTATSQLMRERTYGGKLTENI 601
           +    +    K+ +  ++  +R   Y+              A ++ MRE  +  ++  N 
Sbjct: 752 DRYFHLYAGVKQFMIDIVEQTRERGYATTLLGRRRAVPDIDAKNKGMRE--FAERMAINT 809

Query: 602 -VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
            +Q  + DI+   M    K       G  ++L +HDE+V E  +        +  
Sbjct: 810 PIQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQIHDELVFEVSEAELAETRVVVQ 864


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 111/566 (19%), Positives = 189/566 (33%), Gaps = 102/566 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-----EQSAMPSD 56
            ++ +D ET   +PL               L       EP K W            + S 
Sbjct: 322 KEICLDTETTDLRPL------------EAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQ 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L + ++    HN  ++  + +     +I        ++LA    L S  +   L  
Sbjct: 370 LKPLLENPSIGFYGHNFKYDYHVLRNH---NISVANISFDTILASYL-LNSHKRQHSLDH 425

Query: 117 NFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
              E   K++   + LI +  K  ++       +  H         YC  DV+ T  L  
Sbjct: 426 LALELFDKVKIAIQELIGK-GKNQLNMKNVALDKICH---------YCCEDVDYTIRLKN 475

Query: 176 RLIPLSDGERDL-----------WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L+   + ER L             +   +   G  ID   +  L + I QE   L+++I
Sbjct: 476 ILLSQLE-ERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNI 534

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---SEGTLKSILS-HSNITQLAKDLILN 280
             L    I +      L   LF   GI           T   +L    ++  +A+ L+  
Sbjct: 535 YALAGE-IFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEY 593

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           R      +   +N+L   V+   GR+        A+ TGR S      QN+P +      
Sbjct: 594 RTLEKLRST-YVNSLPLQVNAKTGRIHCNFNQSMAA-TGRLSCQDPNLQNIPVRT----- 646

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R            + AD + IE R+LA ++ +   
Sbjct: 647 -------------------EVGRQIREAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVL 687

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           IKAF + EDI+  T +  F+ P+ +VS EQR   K +   L Y     G A         
Sbjct: 688 IKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLIYGQQAFGLAHELGIDTKT 747

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               +Q++ +       F +                       +  S +  ++     FA
Sbjct: 748 AAAFIQRYFERYGKVKEFLEACKQSARETGKAVTMYGRERLLPEIRSQNAMIRATADRFA 807

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQ 519
           V   + GT  +L+K A    ++ ++Q
Sbjct: 808 VNTPIQGTQADLIKMAMLKINKLLIQ 833



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 598 TENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               +Q    D++   M           K G+ I L +HDE++ E P+    S+  L  
Sbjct: 808 VNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMI-LQIHDELIFEVPNQELESISHLVK 865


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/530 (17%), Positives = 183/530 (34%), Gaps = 63/530 (11%)

Query: 32  LCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           LCA       + L +  E++A + S L   ++DE V+ VAHN+ F+  +  +     +P 
Sbjct: 380 LCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFDLEVLTRY---GLPE 436

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TR 149
              +  ++LA               ++  +  +  E    L+        D  P +    
Sbjct: 437 AHPLYDTMLAHYL------------IDADQGHSLDELAGGLLRYDTIRYKDLAPQESFAL 484

Query: 150 ANHVQAWQLFGEYCKRDVEATRELF----KRLIP-----LSDGERDLWLLDQTINDRGYR 200
              V   +L  +Y   D   T  L+    K+L P     L++ E  L  +   +  RG  
Sbjct: 485 RTDVDP-KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIV 543

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEG 259
           +D++ + + ++ + +   +L+++I   +   +         +   LF    I        
Sbjct: 544 LDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTK 603

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314
           T   + +   +  L     +  L        KL     + L +    DG+L  +      
Sbjct: 604 TGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAV 662

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +      L +   A                     I    G 
Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPI----GA 718

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + +E RV+A ++ +   I +F +G+DI+  T AK F    ++V+   R+  K 
Sbjct: 719 VLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKT 778

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY- 489
               + Y     G ++            ++++         F +   A +      +   
Sbjct: 779 ANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNKAIALATERGYTETAF 838

Query: 490 --------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                  A+   + GTA +++K A     + + +
Sbjct: 839 GRRRQLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTK 888


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/490 (19%), Positives = 162/490 (33%), Gaps = 71/490 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L     + V  N  F  +L  +  GI + +   +     A   G  +    A    
Sbjct: 488 LKPLLESGGHLKVGFNVKFTAVLLAQH-GIVMQNNDDVELISYALDAGRGAHDLEALAQR 546

Query: 117 NFSEHLTKMEE--GKALIAR-FCKGSID--SPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                     E  G       F + +ID  +       A  ++ WQ+         E   
Sbjct: 547 WLDHTALNYGELIGSGRNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRLV--AERMN 604

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +++ L      ER +      +  RG  ID  ++ +L    AQ   +L+ +I KL    
Sbjct: 605 SVYETL------ERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEP 658

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290
           I +      +   +F   G+     ++ T     S   +  LA+      R       + 
Sbjct: 659 I-NVGSPKQIGEIMFGKMGLPGGSKTK-TGAWSTSAQILDDLAEQGHDFPRKILDWRQVS 716

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L E V+       T     A+ TGR S      QN+P              
Sbjct: 717 KLKSTYTDALPEYVNPQTSRVHTTYALAATTTGRLSSNEPNLQNIP-------------- 762

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA+ G KLV AD + IE R+LA IA      +AF +G
Sbjct: 763 ----------VRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDG 812

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T ++ F  P+  +  E R   K +   + Y     G A          G  +++
Sbjct: 813 LDIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGTYIKK 872

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + D                     +   +S +   +      A+  +L G
Sbjct: 873 YFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKSPNPSHRAFNERAAINARLQG 932

Query: 501 TACELVKKAW 510
           TA +++++A 
Sbjct: 933 TAADIIRRAM 942



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655
           Q  + DI+   M               ++L VHDE++ E PD     ++  +  +M   P
Sbjct: 931 QGTAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDDEVAATLPVVQHVMQDAP 990


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 143/399 (35%), Gaps = 68/399 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G  +D D +  L E +A +  +++  I  L      +      L 
Sbjct: 515 IEMPLVPVLAKMERAGMLVDPDRLHSLSEGLATQITEVERSIRDLAGDETFNIGSPMQLS 574

Query: 243 MYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296
             LF + G+    + +        +   ++ LA+D  + RL        K     L+TL 
Sbjct: 575 HVLFDVMGLPTKGLKKTKRGYYSTNAKVLSDLARDHEIVRLILDWREKSKIKSTYLDTLG 634

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                DGR+  T      + TGR S      QN+P +                       
Sbjct: 635 PLRRGDGRVHTTYN-QTITATGRLSSSDPNLQNIPTRS---------------------- 671

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  V++   A  G   +  D + IE R+LA ++G++  ++AF  GED +  T A+ 
Sbjct: 672 --ELGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVRAFNEGEDFHAETAARV 729

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P+ +V+ + R+  K +   + Y     G ++      +     + ++ +      TF
Sbjct: 730 FGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQSLHISMAEARDMIDRYYEAYPGVRTF 789

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D                       + ++ +  ++      A+   + GTA +++K A  
Sbjct: 790 LDNVVARAKQTGYAETMYGRRRHIPELKAKNPQLRGFGERTAMNHPMQGTAADIIKIAMA 849

Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGSISA 540
              +           +LQ+  +L   F C V E   ++A
Sbjct: 850 RVSRRLEEEGFAAHMILQVHDELD--FECPVDEVERLTA 886


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/553 (18%), Positives = 187/553 (33%), Gaps = 92/553 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPS 55
           + +L ID ET S +          A  A +   A++W+       P  L D T    +  
Sbjct: 352 LERLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLE 401

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   LR      V  N  ++ ++  +  G+++P   +  T V               LA
Sbjct: 402 RLAPILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLA 458

Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEA 169
             +  +        +  G+   +       +  PY C   +     QL        D   
Sbjct: 459 RQYLRYQMVAITELIGSGRDQKSMRDVSIDEVGPYACEDTDIAL--QLADVLAAELDRHG 516

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            R + +      + E  L  +   +   G  ID  ++ ++ + +  E  +L+  I ++  
Sbjct: 517 LRHIAE------EMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVAG 570

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF   G+     +  T +     S + +LA    L  L      +
Sbjct: 571 VEF-NIGSPQQLADVLFKKLGLKPRART-STGRPSTKESVLQELATQHPLPGLILDWRHL 628

Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
            KL     + L   +    GR+  T      + TGR S      QN+P R E   E    
Sbjct: 629 AKLKSTYVDGLEPLIHPETGRIHTTFN-QTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +   G KL+ AD   IE R+LA ++G++   +AF
Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
             G+DI+  T A+ F  P ++V+ EQR   K++   + Y     G A+  +         
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497
           ++++ +     + +      ++      +                          AV   
Sbjct: 783 IEEYQRAFPGVTRYLHRVVEKARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842

Query: 498 LIGTACELVKKAW 510
           + GT  +++K A 
Sbjct: 843 IQGTQADMIKLAM 855


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 186/568 (32%), Gaps = 97/568 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSD------ 56
           ID ET S           Y  QA +   ++A           T   E   +         
Sbjct: 364 IDTETTS----------VYWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDT 413

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART--NGL 105
               L   L + ++  +  +  ++  +           I      W   ++LA    N  
Sbjct: 414 VLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 473

Query: 106 PSSLKNACLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHV-QAWQLF 159
            +      LA ++ +  T   +   GK      F + +ID +  Y C  A+   Q ++LF
Sbjct: 474 VTRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLFELF 533

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +    D    + L    IP ++       +   +   G  I    + +L +   +E   
Sbjct: 534 SQKLADDTNNAKLLHALEIPTAE-------ILCQMEAHGILIKRPFLNELSKRFDEEIIA 586

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L++   ++      +      L   LF   G+     ++ T +     + ++++   L+ 
Sbjct: 587 LEKRAYEVAGEEF-NLGSPKQLGEMLFDKLGVAGGKKTK-TGQYSTGEAVLSKIDHPLVD 644

Query: 280 NRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
             L   G + LK    + L     S+     T      + TGR S      QN+P +  +
Sbjct: 645 ITLEYRGLSKLKSTYTDALDNVADSETDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTAT 704

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   IA  G+ ++ AD + IE R++A  +G+ 
Sbjct: 705 ------------------------GRLIRQAFIAPEGRVILAADYSQIELRLMAHFSGDK 740

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
               AF  G DI+  T A+     +  V+  +R   K +   L Y       AK  +   
Sbjct: 741 NLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINFGLLYGMSAFGLAKQLQMSR 800

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
           S     +  + +       +    +A ++                     +  ++     
Sbjct: 801 SEAQDYIDMYFERYPGVKDYMINTRASAYEHGYVETILGRKLYTPDINHSNRMVKQGAER 860

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            A+   L G+A +L+K A  A  + + +
Sbjct: 861 AAINAPLQGSAADLIKLAMIAVDKVLPK 888


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/550 (16%), Positives = 175/550 (31%), Gaps = 100/550 (18%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
            +  +    L +E +  +  N  ++ ++ K   G++I  K +  T +        +    
Sbjct: 408 PILDEFKVVLENENIAKIGQNIKYDMLILK-WYGLEIKGKLF-DTMLAHYLIDPDTRHNM 465

Query: 112 ACLALNF----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
             L+ N+       +TK+   K        G++   P                +Y   D 
Sbjct: 466 DVLSENYLCYSPISITKLIGPKGKNQ----GNMRDVPVA-----------QVVDYAAEDA 510

Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T +L     P+           + E  L  +   I   G RID++ ++   + +  + 
Sbjct: 511 DVTLQLANVFRPMLKDLNAEQLATEVENPLIYVLADIESEGVRIDIETLVNYSKELETDI 570

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           +K ++++          +     L   LF    +D       T +       +  LA   
Sbjct: 571 RKFEKNVYDKCGVEFNLA-SPKQLGEVLFDRLQLDPKAKKTKTGQYQTGEDVLLALASKS 629

Query: 278 -----ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                IL+           ++ L   V+   GR+  +      + TGR S      QN+P
Sbjct: 630 DIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSYN-QAVAATGRLSSNNPNLQNIP 688

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
            +                              VR   I       L+ AD + IE R++A
Sbjct: 689 IRTER------------------------GREVRRAFIPRDENHVLLSADYSQIELRIIA 724

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----K 446
            I+ E+  ++AF  G DI+  T AK +   I++V+  QR   K +   + Y   A    +
Sbjct: 725 DISKEENMLQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAVNFGIIYGQSAFGLSQ 784

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485
                       + Q+         +       +                      +  +
Sbjct: 785 SLGIPRKEAAEIIDQYFTQYPGIKKYMSDTMNFARENGFVETILGRRRYLRDINSANQTV 844

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT-EGFACVVQE 534
           +      A+   + G+A +++K A    H+            +Q+  +L  +     V E
Sbjct: 845 RGFAERNAINAPIQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVFDVLKTEVDE 904

Query: 535 GGSISARRVA 544
              I + R+ 
Sbjct: 905 MKEIISHRMK 914


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/594 (15%), Positives = 184/594 (30%), Gaps = 118/594 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-- 61
           L +D ET S   +          +A +    +A ++            A+P+D  Q L  
Sbjct: 350 LSLDTETTSTDAI----------EAELVGLCFAVEEHKAFYV------AIPNDRKQALQY 393

Query: 62  --------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
                    D +++ +  N  ++  + K   G+ +  K  +  ++LA     P       
Sbjct: 394 VNIFKSVYEDPSILKIGQNIKYDYEVLKNY-GVTLQGK--MFDTMLAHYVLQPELRHNMD 450

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +A     + T   E   LI    K            A          EY   D + T +
Sbjct: 451 YMAETLLNYKTIHIE--ELIGAPGKHQKSMRDIAPEDA---------YEYGAEDADITLQ 499

Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L   L P            D E  L  +   +   G R+D   +    E+  +   +L+ 
Sbjct: 500 LRNVLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLER 559

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            I +        +     +   LF    I        T + + +   +  L     +   
Sbjct: 560 HIYEEAGETFNIA-SPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVED 618

Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
             +   + KL       L + +      +  +      + TGR S      QN+P +   
Sbjct: 619 ILAHRGLKKLLGTYVEALPKLIHKRTQHIHTSFN-QALTATGRLSSSDPNLQNIPVRSED 677

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R C +   G     AD + IE R++A ++G++
Sbjct: 678 ------------------------GKEIRKCFVPEPGCLFFSADYSQIELRIMAHLSGDE 713

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+AF  G DI+  T AK ++  I  V+ E+R   K     + Y     G A+      
Sbjct: 714 NMIEAFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYGITTYGLAQRMGIDN 773

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
               + ++ +         + +  + E+                      +  ++     
Sbjct: 774 KEARMLIEDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGRRRYLPDINSKNGTVRGFAER 833

Query: 492 FAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535
            A+   + G+  +++K A             + + +LQ+  +L        +E 
Sbjct: 834 NAINAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPEEKER 887


>gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
 gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
          Length = 239

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 116/288 (40%), Gaps = 61/288 (21%)

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           +K F    DIY  + +  F+ P++K  V+   R  GK+ ELALGY G       +     
Sbjct: 1   MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIG---- 56

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A+   L     + +  +WRA +  
Sbjct: 57  ------------------------------------ALDTGLSEDELQPLVDSWRASNPN 80

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           ++Q W D+       +++  +     +  V           + IVLPS RRL Y   K  
Sbjct: 81  IVQFWWDVDRCVKTAIKQRTATETHGIRFV------YQNGILFIVLPSGRRLCYVKPKIG 134

Query: 577 CSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
            +     +          +  R  +YG K  ENIVQAISRDILC  M+  T +   IV  
Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMR--TLSHCFIVGH 192

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE++ ETP     +   +C  + + P W  GL L+A+GYE   Y+K
Sbjct: 193 VHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 158/483 (32%), Gaps = 91/483 (18%)

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
              +  DIP  RW     LA     P         L                        
Sbjct: 537 SHAIWRDIPGDRW-FDLGLAAYLLDPEERDYGWPRLAARWGDMLD--------------- 580

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                  T    + A ++      R   A+ +   R +     E  L  +   + + G  
Sbjct: 581 -----RSTDNPGLLALEMAQGMAGRLAGASLDTLMRTL-----ELPLVPVLADMEEAGIA 630

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
           +D        + +  E  ++ +++ K   G   + R    L   LF   G+  V  + G 
Sbjct: 631 VDRTAFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGG 689

Query: 260 ---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T +  L   +      DLIL+           L  L + V + GR+  T     A+ 
Sbjct: 690 QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDAAGRIHSTFNQL-ATA 748

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                        G     +RSC  A+ G  L
Sbjct: 749 TGRLSSSNPNLQNIPAR------------------------GDLGRRMRSCFTAAEGNLL 784

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE RVLA ++ +   + AF  G DI+  T    ++T  + V+ +QR   K + 
Sbjct: 785 VSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTIN 844

Query: 437 LALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------- 483
             L Y  G +      +   +     ++++   ++    F D  +A +            
Sbjct: 845 FGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGR 904

Query: 484 ------------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLW 521
                        ++ Q    A+   + G+A +++K A  A H            +LQ+ 
Sbjct: 905 RRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVH 964

Query: 522 KDL 524
            +L
Sbjct: 965 DEL 967


>gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/530 (17%), Positives = 183/530 (34%), Gaps = 63/530 (11%)

Query: 32  LCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           LCA       + L +  E++A + S L   ++DE V+ VAHN+ F+  +  +     +P 
Sbjct: 380 LCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFDLEVLTRY---GLPE 436

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TR 149
              +  ++LA               ++  +  +  E    L+        D  P +    
Sbjct: 437 AHPLYDTMLAHYL------------IDADQGHSLDELAGGLLRYDTIRYKDLAPQESFAL 484

Query: 150 ANHVQAWQLFGEYCKRDVEATRELF----KRLIP-----LSDGERDLWLLDQTINDRGYR 200
              V   +L  +Y   D   T  L+    K+L P     L++ E  L  +   +  RG  
Sbjct: 485 RTDVDP-KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIV 543

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEG 259
           +D++ + + ++ + +   +L+++I   +   +         +   LF    I        
Sbjct: 544 LDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTK 603

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314
           T   + +   +  L     +  L        KL     + L +    DG+L  +      
Sbjct: 604 TGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAV 662

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +      L +   A                     I    G 
Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPI----GA 718

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + +E RV+A ++ +   I +F +G+DI+  T AK F    ++V+   R+  K 
Sbjct: 719 VLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKT 778

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY- 489
               + Y     G ++            ++++         F +   A +      +   
Sbjct: 779 ANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAF 838

Query: 490 --------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                  A+   + GTA +++K A     + + +
Sbjct: 839 GRRRQLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTK 888


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/548 (17%), Positives = 181/548 (33%), Gaps = 91/548 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------DLL 58
            +D ET S             +     L   ++  EP + +                 L 
Sbjct: 380 SVDTETTS------------LDTFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLK 427

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-NACLALN 117
             L +  +     N  ++ ++ K   G+++    +  T + +      S    +   AL+
Sbjct: 428 PLLENPEIGKTGQNLKYDILVLKNY-GVELQPVEF-DTMLASYVLDPESRHNLDDMAALH 485

Query: 118 FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            S    K +E    GK+ I  F         Y C  A+      L GE   + +EAT EL
Sbjct: 486 LSRQTVKYDELVGTGKSAIGIFEVEPQKLSDYACQDADITLK--LRGELAAK-LEATPEL 542

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +    L   E  L  +   +  +G  ID + + KL   + +E   L E I +       
Sbjct: 543 LEVCRTL---EFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTERIHEAAGETF- 598

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L   LF +  +     ++      ++ +   + +  +A +++  R +      
Sbjct: 599 NIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVLEYR-SLQKLKG 657

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +  L + + +  GRL  +      + TGR S      QN+P +               
Sbjct: 658 TYIEALPKLLHAATGRLHTSFN-QSITATGRLSSSNPNLQNIPIRT-------------- 702

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   I S     L+ AD + IE RV A ++G+   I+AF N ED
Sbjct: 703 ----------DLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPMLIEAFRNHED 752

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T    F+T  D+V+ + R   K +   + Y     G ++            +  + 
Sbjct: 753 IHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAKEIIDTYM 810

Query: 464 QNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTA 502
                  +       E+  L                      ++       +   + GTA
Sbjct: 811 AKYPGMFSALQTTVEEARKLGYVTTLMGRRRYVPDLNSPNGNIRKAAERVTMNTPIQGTA 870

Query: 503 CELVKKAW 510
            +++K A 
Sbjct: 871 ADIIKYAM 878



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 14/122 (11%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            A+ + +            +   +  +R+L Y                L        K  
Sbjct: 801 EAKEIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGRRRY---VPDLNSPNGNIRKAA 857

Query: 599 ENIV-----QAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL 647
           E +      Q  + DI+   M    +   +   + V+   VHDE++ ETP      +  L
Sbjct: 858 ERVTMNTPIQGTAADIIKYAMCTISRRLKEERLNSVMLLQVHDELLFETPADEQSRLTEL 917

Query: 648 CS 649
             
Sbjct: 918 VE 919


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 141/370 (38%), Gaps = 57/370 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L    D ER L  +   +   G  +D  L+ +  + +  E ++L E+           
Sbjct: 546 KLLRVYEDIERPLVGVLARMESAGITVDASLLAQESKELGVEVEQLVEEAHAAAGHPFNL 605

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
           S     L   LF   G+ +V  +     S      +++LA +  L ++      + KL  
Sbjct: 606 S-SPKQLAQILFAEQGLPVVKKTASGTPST-DEEVLSELALNYPLPKIILEHRRLTKLKS 663

Query: 293 ---NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
              + L   +  DGR+  T      + TGR S      QN+P +                
Sbjct: 664 TYLDKLPTLIDRDGRIHTTFG-QAVAVTGRLSSMDPNLQNIPTRT--------------- 707

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R+   A  G  ++ AD + +E R++A ++ +   + AF+ GEDI+
Sbjct: 708 ---------PEGRRIRTAFTARRGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIH 758

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQN 465
            +T A+ F+TP+D+V+ +QR + KV+   L Y       A+            + ++   
Sbjct: 759 RSTAAEVFHTPLDQVTPDQRRMAKVINFGLIYGMSAFGLAQQMGLDRQVAAAYVDEYFHK 818

Query: 466 VKSTSTFEDWEQAES-----------HHLWMQD-QYPEFAVK---------DKLIGTACE 504
                 + +  +A++             LW+ D   P   V+           + GTA +
Sbjct: 819 FPGVKRYMEKTRAQAAEDGYVETAFGRRLWVPDITAPRPMVRAAAERAAINAPMQGTAAD 878

Query: 505 LVKKAWRAKH 514
           ++K+A  A  
Sbjct: 879 IIKRAMIAVD 888



 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652
           Q  + DI+   M          K    ++L VHDE++ E P      V   L  LM 
Sbjct: 873 QGTAADIIKRAMIAVDAWLRTEKLQAKLLLQVHDELIVEAPAEEVELVKQKLPELMA 929


>gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 153/485 (31%), Gaps = 79/485 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                  HN  F+  +  ++ G+  P  R   T V A       S      A +    L 
Sbjct: 415 PACTLAMHNGKFDYEVL-RSNGLAEPRCRIADTMVAAWLLDPDRS------AYSLEA-LA 466

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
             + G   I        D  P   T A+     +    Y   D + T +L++  +P    
Sbjct: 467 ADKLGLETI-----PYTDVVPKGSTFADIPL--EQAVPYAAEDADLTWQLYRLFLPRLAA 519

Query: 184 ----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                     E  +  +   +   G  I+   ++   E +  E +++  +I +L      
Sbjct: 520 AKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIERIRREIYELVGHEF- 578

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +   T  L+  LF    +     ++    T   +L            IL+    +     
Sbjct: 579 NVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPRKILDYRLKTKLFSS 638

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++TL   V  + R+  +    G + TGR S      QN+P                   
Sbjct: 639 YVDTLPLMVDGNDRIHTSFIQTG-TATGRLSSREPNLQNIP------------------- 678

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R    A  G +L+ AD + IE  +LA ++G+     AF+ G D++ 
Sbjct: 679 -----VRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSGGTDVHR 733

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T A  F    D V+ + R   K +   + Y       A       +     ++ + +  
Sbjct: 734 ATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAFRLAGALGIPRTQAAEFIEAYFKTY 793

Query: 467 KSTSTFEDW-----------EQAESHHLWMQDQ----------YPEFAVKDKLIGTACEL 505
                F +            E       +++                AV   + G+A ++
Sbjct: 794 AGVRNFMNEMVNAAQQSGFVETIFGRRRYIRAINSSSKIEKSGAERVAVNTPIQGSAADI 853

Query: 506 VKKAW 510
           VKKA 
Sbjct: 854 VKKAM 858


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/620 (17%), Positives = 203/620 (32%), Gaps = 107/620 (17%)

Query: 1   MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +  +  D ET    PL           A +   A++W+          E      +++
Sbjct: 368 MKQNSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIPFPEDKNQAQEII 417

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113
           + LR     E +  +  N  ++  +  K    +I  K     S+LA              
Sbjct: 418 ETLRPFFESEMIEKIGQNLKYDIKVLHKY---NIQVKGKFFDSMLAHYLINPDMRHNMDV 474

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L+  +  +         LI +  KG       D          +   EY   D + T +L
Sbjct: 475 LSETYLNYTP--VSITELIGK--KGKNQLSMRDV-------PLEKQTEYAVEDADITYQL 523

Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            +   P           +  E  L  +   +   G  +D + +  L E +  + K+L   
Sbjct: 524 AQHFRPELAEASTEELFNTIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQSK 583

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I K  D     +     L   LF    +        T +   +   ++ LAKD  + R  
Sbjct: 584 IYKEADQEFNIA-SPKQLGEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEIIRNV 642

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L   V    GR+         + TGR S      QN+P +    
Sbjct: 643 LEYRGLSKLKSTYVDALPLQVEERTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER- 700

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                                     VR   +       L+ AD + IE R++A ++ ED
Sbjct: 701 -----------------------GRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSEED 737

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+AF NGEDI+ +T +K F+ P+D+V++EQR+  K +   + Y     G +       
Sbjct: 738 TMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSR 797

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
           +     ++ + +       +   +   +                      +  ++     
Sbjct: 798 TEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGRRRYLKDINGSNAIVRGAAER 857

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            AV   + G+A +++K A    H+ + +             +    +    V +V +  +
Sbjct: 858 NAVNAPIQGSAADIIKIAMINIHKKLSEGNY--------KTKMLLQVHDELVFDVHKAEL 909

Query: 552 RRHKRDVHIVLPSSRRLVYS 571
              K  +   + ++ +L   
Sbjct: 910 EELKSLIQSEMENAYKLAVP 929


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 65  KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 121

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 122 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 174

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 175 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 233

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 234 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 292

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 293 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 328

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 329 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 388

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 389 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 448

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 449 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 508

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 509 AVARLAKEVME 519



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 357 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 416

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 417 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 476

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 477 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 518


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/579 (20%), Positives = 204/579 (35%), Gaps = 81/579 (13%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           D P  + D     A          DE ++  + +   + +L  K LGID+         +
Sbjct: 344 DSPAYILD--PDQAFIDSFKDVFEDEKILKNSFDIKEDIVLLNK-LGIDLNLP--FDDLM 398

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           L      PS    +   L          E  + +    KG   S  Y     + +  +  
Sbjct: 399 LMHYLIDPS---RSSYDLKTLSQAYLDYEVISEVDLLGKG-KKSLSYGELDYDKLSNYLA 454

Query: 159 FGEYCKRDVEA----TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                  D +A        +K      D E  L  +   +   G+  D  ++L L+E I 
Sbjct: 455 SELNAIEDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRKVLLDLKEDIN 514

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS----- 266
           ++ +KL  +I +L      +   T  L   LF    + ++  ++    T  S+L      
Sbjct: 515 KDLEKLTSEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTGFSTDASVLEKLRDK 573

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           H  I ++ K   L +L S+      +  L +A+  DGR+R T +   A+ TGR S     
Sbjct: 574 HQIIPKIEKYRELFKLQSTY-----IEGLEKAIDDDGRIRSTFRQNIAA-TGRLSSQDPN 627

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QNLP +                              +R    A  GK L+ AD + IE 
Sbjct: 628 LQNLPIKT------------------------DEGRLIRKAFKAGQGKILIDADYSQIEL 663

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R+LA ++G++  I+AF NGEDI+  T +K F+TP+D+V+K QR+  K +   + Y     
Sbjct: 664 RILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFGIIYGISDY 723

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481
           G ++            +  +  +  S   + D                       +  S 
Sbjct: 724 GLSQNLNIPRKEAKAYIDNYMASYPSIKAYMDSIVEKAKEDGFVETLFNRRRYVPEINSK 783

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +  ++      A+   + GTA +++K A     + + +   D       V+Q    I   
Sbjct: 784 NFNVRSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLD----AKIVLQIHDEIILE 839

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                    M   +  +         L+     G+  Y 
Sbjct: 840 ASLEDKDSAMEILRNSMQEAANLKVPLIVDIDTGESMYE 878



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M    KN  K G D  IVL +HDEI+ E       S
Sbjct: 788 RSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEASLEDKDS 847

Query: 644 VGTL 647
              +
Sbjct: 848 AMEI 851


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 159/491 (32%), Gaps = 61/491 (12%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L+  L ++ +   AHN+ +   L     G +I    +  T + A   G           L
Sbjct: 387 LIALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLG---EKNLGIKDL 441

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            F        E   +     +            +   Q    +    K    A     K 
Sbjct: 442 VFEHFGV---EIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETKL 498

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           +    + E  L  +   +   G  +D DL+  + E +  +  KL+E I         +  
Sbjct: 499 IDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHSF-NIG 557

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L          DLIL            L+
Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYLD 617

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           TL   V+   R   T      + TGR S      QN+P                      
Sbjct: 618 TLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP---------------------- 655

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
               G     +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T 
Sbjct: 656 --VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATA 713

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST 469
           A+  N    +V+KEQR + K +   + Y   +    +  +   +     ++ + +     
Sbjct: 714 ARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRV 773

Query: 470 STF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           + +                         +  S +  +++     A+   + GT+ +++K 
Sbjct: 774 AIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833

Query: 509 AWRAKHQGVLQ 519
           A     + + +
Sbjct: 834 AMVRLDEKLKE 844



 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
           VQ  S DI+   M    +          ++L VHDE++ E PD     +  L  LM  
Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSAL--LMET 878


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 176/529 (33%), Gaps = 89/529 (16%)

Query: 33  CAYAWD-DEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            +Y       V   +  E+  A+  +   +   E +  V HN  ++  +       ++P 
Sbjct: 395 FSYEIGKGYYVSFPENQEETKAILEEFRPFFESEMIEKVGHNLKYDIKVLSNY---NMPV 451

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           K  +  +++A     P      +       + H   + E   LI +  K  +        
Sbjct: 452 KGKLFDTMIAHYLINPDMRHNMDVLAETYLNYHPVSITE---LIGKKGKNQL-------- 500

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRG 198
            +  V   +   EY   D + T +L +      D           E  L  +   +   G
Sbjct: 501 -SMRVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTELFNKVELPLVSVLTAMEIEG 559

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D + + +L   +  +  +L+++I +        +     L + LF    +       
Sbjct: 560 INVDTNFLKQLSTALTDDINRLEKEIYEQAGEEFNIA-SPKQLGIVLFENMKLVDKPKKT 618

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFY 312
            T +       ++ LAK+  + R         KL     + L   ++   GR+       
Sbjct: 619 KTGQYKTGEDILSFLAKEHKIIRDIQEYRQYKKLQSTYVDALPNEINKKTGRIHTQY-MQ 677

Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370
             + TGR S      QN+P R ER  E                         VR   +  
Sbjct: 678 AVAATGRLSSNNPNLQNIPIRTERGRE-------------------------VRKAFVPK 712

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                L+ AD + IE R++A ++ E+  I AF NGEDI+ +T AK F   I+ V++EQR+
Sbjct: 713 DENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIHASTAAKVFGVDINDVTREQRS 772

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------- 473
             K +   + Y     G +             +  + +       +              
Sbjct: 773 NAKTVNFGIVYGVSAFGLSNQTDLSRGEAKELIDTYYETYPKLKAYMSAQVDFAREHGYV 832

Query: 474 --------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                     +   S +  ++      AV   + G+A +++K A    H
Sbjct: 833 ETVLNRRRYLKDINSRNAMVRSGAERNAVNAPIQGSAADIIKLAMINIH 881


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 62  KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 118

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 119 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 171

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 172 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 230

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 231 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 289

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 290 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 325

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 326 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 385

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 386 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 505

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 506 AVARLAKEVME 516



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 354 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 413

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 473

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 474 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 515


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 62  KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 118

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 119 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 171

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 172 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 230

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 231 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 289

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 290 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 325

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 326 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 385

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 386 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 505

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 506 AVARLAKEVME 516



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 354 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 413

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 473

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 474 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 515


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 61  KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 117

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 118 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 170

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 171 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 229

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 230 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 288

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 289 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 324

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 325 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 384

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 385 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 444

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 445 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 504

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 505 AVARLAKEVME 515



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 353 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 412

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 413 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 472

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 473 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 514


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/514 (16%), Positives = 164/514 (31%), Gaps = 82/514 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSSLK 110
           L     +  +    +N   + ++ K        L  DI    ++  S  +       +LK
Sbjct: 367 LKDVFENPEIKKYGYNLKNDCLILKPYEINLTGLYFDIAIAEYLIDSTSSNYEIKDIALK 426

Query: 111 -NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            N    L+  E L K  + K          I                       K  +  
Sbjct: 427 YNLGDVLSLEELLGK-GKSKKDFKDLSDAQISGYACSVLDIVDK---------GKEALIT 476

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T E +       + E  L  +   +   G   D +++ +L++    E K L+  I +   
Sbjct: 477 TIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIYEYAG 536

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      L   LF   G+  +  ++    T   +L   +      D I      + 
Sbjct: 537 ENF-NINSPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKITLYRQYTK 595

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   ++   GR+  +      + TGR S      QN+P              
Sbjct: 596 LQSTYVDGLLNIINPKTGRIHSSFN-QTITTTGRISSTEPNMQNIP-------------- 640

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A     LV AD + IE R+LA IA ++  I AF+ G
Sbjct: 641 ----------VRLEIGRELRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDAFSKG 690

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           +DI+  T ++ FN P+D+V+KE R+  K +   + Y     G +             +  
Sbjct: 691 DDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYGISDFGLSNNLGISKQVAKEYIDN 750

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIG 500
           +         + +    ++ +    + Y                        A+   + G
Sbjct: 751 YFARYPYVKKYMEDIVEKAKNDGYVETYIGRRRYIPELGSNNFIMKNLGKRLAMNTPIQG 810

Query: 501 TACELVKKAWRA----------KHQGVLQLWKDL 524
           +A +++K A             K + +LQ+  +L
Sbjct: 811 SAADVIKIAMVKVYARLKSEGLKSKLILQVHDEL 844


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 60  KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 116

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 117 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 169

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 170 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 228

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 229 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 287

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 288 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 323

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 324 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 383

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 384 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 443

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 444 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 503

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 504 AVARLAKEVME 514



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 352 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 411

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 412 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 471

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 472 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 513


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 140/400 (35%), Gaps = 68/400 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  +D   +  L E +  +  +L   I  L      +      L
Sbjct: 540 DIETPLVPVLVAMERTGMLVDPGCLKDLSEGLESQIDELAVRIRALAGDSDFNISSPMQL 599

Query: 242 RMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTL 295
              LF + G+    + +        +   + +LA+D  L RL        K     L+TL
Sbjct: 600 SHILFDVMGLPTKGLKKTHRGYYSTNARVLDELAQDNELVRLILEYREKTKIKSTYLDTL 659

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
                 DGR+  T      + TGR S      QN+P +                      
Sbjct: 660 GPLRRQDGRVHTTYN-QTITATGRLSSSNPNLQNIPTRS--------------------- 697

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   V++   A  G   +  D + IE R+LA ++G++  I+AF  GED +  T A+
Sbjct: 698 ---ELGHTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAAR 754

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F  P+D+V+   R+  K +   + Y     G ++      S     + ++ +       
Sbjct: 755 VFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQTLDIPVSEAQEMIDRYFEAYPGVRA 814

Query: 472 FEDWEQAES---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F D   AE+                      +   +      A+   + G+A +++K A 
Sbjct: 815 FLDRTVAEAAERGYAETMFGRRRPIPELRMKNATQRSFGERTAMNHPMQGSAADIIKIAM 874

Query: 511 RAKHQG----------VLQLWKDLTEGFACVVQEGGSISA 540
           R   +           +LQ+  +L   F C + E   +SA
Sbjct: 875 RRVAERLHGGDLHAKMILQVHDELD--FECPIAEVADVSA 912


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 62  KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 118

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 119 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 171

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 172 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 230

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 231 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 289

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 290 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 325

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 326 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 385

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 386 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 505

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 506 AVARLAKEVME 516



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 354 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 413

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 473

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 474 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 515


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 104/543 (19%), Positives = 184/543 (33%), Gaps = 90/543 (16%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            + D T      +DL++ L +  V     N+     L+ K     + +  W  + V    
Sbjct: 353 AVQDCTVYPLEDADLVRLLDNADVTLEVFNAA---PLYAKA----MAAGGWGSSIVWD-- 403

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             L + L +A  +      ++++       A F            T A++  A +L   +
Sbjct: 404 GKLAAYLLDASASKY---QISELTASYRAAAAF------------TCADYPDAGRLADLF 448

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           CK   E T      L   ++ E  L  +   +   G  +D D + +    +  E +++  
Sbjct: 449 CKMKAEITACGEDSLY--NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLT 506

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I   T     +      L   LF   G+     ++    T    L       L +D++ 
Sbjct: 507 RIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLRDYPLVEDILQ 566

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R A        +  L + +  DGR+  T     A RTGR S      QN+P +      
Sbjct: 567 YR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRT----- 619

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R+  IA  G  LV AD + IE R+LA I G++   
Sbjct: 620 -------------------ELGSQLRAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQ 660

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF NGEDI+ +T AK +  P ++V+   R+  K +   + Y  G    AK         
Sbjct: 661 QAFLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGAYSLAKDIGVSVKEA 720

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              L+ +       S + D   A++                      +  ++      A 
Sbjct: 721 DAFLKNYLAAFPKVSGYMDKTIADAKACGYVSTLFGRRRALPELASSNFNVRSSGERMAR 780

Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
              + GTA +++K A           + + + +L +  +L         E  +   R   
Sbjct: 781 NTPIQGTAADVIKLAMVRVWKRLRNEKMESRLILTVHDELIVEAPQAEAEKAAQILREEM 840

Query: 545 NVP 547
              
Sbjct: 841 EGC 843


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 139/393 (35%), Gaps = 69/393 (17%)

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ + P              ER L  +   +   G RID +++ +L  
Sbjct: 50  YAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLVPVLARMERAGIRIDRNMLSRLSG 109

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
             +Q   +L+E+I +      +       +   LF   G+     +    +     + + 
Sbjct: 110 DFSQILARLEEEIQEDAGEKFQ-VSSPKQIGDVLFGKLGLPGAKKTPSG-QWATPATLLE 167

Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324
           +LA+    L +   +   + KL     ++L E       R+  +     A+ TGR S   
Sbjct: 168 ELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRETNRVHTSFSL-AATTTGRLSSSE 226

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P +                              +R   +A  GKKL+ AD + I
Sbjct: 227 PNLQNIPIRT------------------------EEGRRIRRAFVAPEGKKLISADYSQI 262

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E R+LA IA      +AF  G DI+  T +  F  P+D+++ + R   K +   + Y   
Sbjct: 263 ELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGIS 322

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479
             G A             ++Q+ +       + D                     + Q  
Sbjct: 323 AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCREKGYVTTLFGRVCHYPQIR 382

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           S++   +      A+   + GTA +++++A   
Sbjct: 383 SNNPSERASVERQAINAPIQGTAADIIRRAMTR 415



 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 26/118 (22%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            R   Y  ++ +      +     R+           +Q  + DI+   M          
Sbjct: 373 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEAALEAK 423

Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPL--------KAEG 667
                ++L VHDE+V E PD     ++  +  +M + P  A  L L        +A G
Sbjct: 424 RLTARMLLQVHDELVFEVPDDEVEATIPVIAEVMEQAP--APALTLSVPLVVEARAAG 479


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/512 (17%), Positives = 168/512 (32%), Gaps = 82/512 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +   E++  +  N  ++  +     G+ I  K +  T +               L
Sbjct: 421 DKFKPFFESESIEKIGQNIKYDLKILSHY-GVQIKGKLF-DTMIAHYLINPDMRHNMDVL 478

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +  + ++  K  E   LI +  KG       D +        +   EY   D + T +L 
Sbjct: 479 SETYLKYSPKSIE--DLIGK--KGKNQKSMRDVSL-------EEIKEYAAEDADITYQLK 527

Query: 175 KRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   P+ D           E  L  +   +   G  +D+  +  +   +A E   L++ I
Sbjct: 528 QNFSPILDKAETKKLFEEIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKI 587

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLA 283
            +        +     L   LF    I      +  T +       ++ LA D  + +  
Sbjct: 588 YETAGEKFNLA-SPKQLGDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDI 646

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                ++KL     + L   V    GR+         + TGR S      QN+P +    
Sbjct: 647 LEWRQMVKLQSTYIDALPNQVDKKTGRVHTDY-MQTVAATGRLSSNNPNLQNIPVRTER- 704

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   I       L+ AD + IE R++A ++GE+
Sbjct: 705 -----------------------GRLIRKAFIPRNENYTLISADYSQIELRIIAALSGEE 741

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I AF N +DI+ +T AK FN  ++ V+KEQR+  K +   + Y     G +       
Sbjct: 742 NMIAAFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVSAFGLSNQTSLSR 801

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 +  +        ++   +   +                      ++ ++     
Sbjct: 802 KESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGRRRYLKDINSANMMVKSGAER 861

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
            AV   + G+A +++K A    H+ + Q    
Sbjct: 862 NAVNAPIQGSAADIIKIAMINIHKKLTQENWQ 893


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 96/570 (16%), Positives = 189/570 (33%), Gaps = 89/570 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L D +++ +  N  ++ I+  +  GI +               G      +   
Sbjct: 396 KKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELS 454

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEA 169
            L F       +     GK+ I         +  Y    A+   + W L       D   
Sbjct: 455 LLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRYAAEDADITFRLWALLKPRLSSDGAT 514

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +++      + +R L  +   +   G  +D   +  L    A +  +L+E+I  L  
Sbjct: 515 --RIYE------EVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYVLAG 566

Query: 230 --GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281
              +I S +Q   L   LF   G+     S+   +   + + + +LA +       IL  
Sbjct: 567 CRFLISSPKQ---LGEVLFGTMGLAGGKKSKSG-QYSTNVTELERLAAEGEVIASKILEW 622

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       + L   V+   GR+  +    GA +TGR S      QN+P +       
Sbjct: 623 RQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIPIRT------ 675

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R+  IA  G  L+ AD + IE R+ A +A E   ++
Sbjct: 676 ------------------EIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQ 717

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF   EDI+  T  + F      V +E RA  K +  A+ Y     G A   +       
Sbjct: 718 AFQEKEDIHALTAKQLFGH----VDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQ 773

Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495
             + ++ +   +   + D                         +S  +  +      A+ 
Sbjct: 774 EMIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAIN 833

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             + G + +++K+A        +++   L +     V+    +    +  VP   + + K
Sbjct: 834 APIQGMSADIIKRAM-------VRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAK 886

Query: 556 RDV-HIVLPSSRRLVYSDVKGDCSYLNTAT 584
             +  +++ ++  +V   V  +       +
Sbjct: 887 PVIRQVMMEAALPIVQLSVDLEVEIGTGTS 916



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTAT-------SQLMRERTYGGKLTEN 600
           ++ R  +R   I     R L +  + G   +     T        ++   +    +    
Sbjct: 775 MIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINA 834

Query: 601 IVQAISRDILCEGMKNAT----KNGYDIV---LTVHDEIVSETPDTPYFSVGTLCSL 650
            +Q +S DI+   M        K G   V   L VHDE++ E P+        +   
Sbjct: 835 PIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQ 891


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 113/684 (16%), Positives = 213/684 (31%), Gaps = 133/684 (19%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLL 58
           D ET S       L  +G   + E       AY      + +     +      + S L 
Sbjct: 335 DTETNSIDPLEADLVGIGCC-WGEGPTAL--AY------IPVGHTAGEQLSMETVLSALK 385

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACLALN 117
             L D+    V  N+ ++R++ ++     +     +   +LA       +S   + LAL 
Sbjct: 386 PILEDQQYPKVFQNAKYDRLVLRRA---GVSLTGVVFDPMLASYVLNPENSHNLSDLALR 442

Query: 118 FSE-----HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           + E     +   + +GK +     + +I      C    H           K D++   +
Sbjct: 443 YLELTTVSYTDLVPKGKTI----GEVAIAEVAQYCGSDVHTTY--RLVPLLKADLQEVPD 496

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L       ++ E  +  +   +   G RID   + +  + +  +   +++          
Sbjct: 497 LATL---YTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYDAAGEEF 553

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L    F   G+D     +         + + +L  D  +         + KL
Sbjct: 554 -NLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSVVEYRTLSKL 612

Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L   +    GR+         + TGR S      QN+P +             
Sbjct: 613 KSTYVDALPALIRPNTGRVHTDFN-QAITTTGRLSSSNPNLQNIPTRT------------ 659

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                         S  +R   +   G +LV AD + IE R+LA ++ E   IK +   E
Sbjct: 660 ------------AFSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEEPILIKTYREDE 707

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T    F+   D+++ E+R + KV+   + Y  GA  F        LD + F    
Sbjct: 708 DVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARFAREMDIHRLDAKTFIDRF 767

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 + +     +   MQ +   +     + G                          
Sbjct: 768 N-----QRYPNVFEYLQQMQREAIAYGYVKTIAGR------------------------- 797

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                    RR+       L + +    + +       N   + 
Sbjct: 798 -------------------------RRYFNFTTRSLQALKGTDPTKIDLSSLRTNGYDAG 832

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYF 642
           L+R            +Q  S DI+   M    +   GY   ++L VHDE++ E P   + 
Sbjct: 833 LLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDELIFEVPPDEWE 886

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKA 665
            +   +   M    S A  L ++A
Sbjct: 887 ELQPKIEQTMEDAVSLAVPLKVEA 910


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/491 (16%), Positives = 158/491 (32%), Gaps = 61/491 (12%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L+  L ++ +   AHN+ +   L     G +I    +  T + A   G           L
Sbjct: 387 LIALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLG---EKNLGIKDL 441

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            F        E   +     +            +   Q    +    K    A       
Sbjct: 442 VFEHFGV---EIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETNL 498

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           +    + E  L  +   +   G  +D DL+  + E +  +  KL+E I         +  
Sbjct: 499 IDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHSF-NIG 557

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L          DLIL            L+
Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYLD 617

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           TL   V+   R   T      + TGR S      QN+P                      
Sbjct: 618 TLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP---------------------- 655

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
               G     +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T 
Sbjct: 656 --VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATA 713

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST 469
           A+  N    +V+KEQR + K +   + Y   +    +  +   +     ++ + +     
Sbjct: 714 ARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRV 773

Query: 470 STF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           + +                         +  S +  +++     A+   + GT+ +++K 
Sbjct: 774 AIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833

Query: 509 AWRAKHQGVLQ 519
           A     + + +
Sbjct: 834 AMVRLDEKLKE 844



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
           VQ  S DI+   M    +          ++L VHDE++ E PD     +  L  LM  
Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSAL--LMET 878


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 106/554 (19%), Positives = 187/554 (33%), Gaps = 89/554 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58
            + +D ET S   + +      AE A I+LCA A             D  E+  +   L 
Sbjct: 352 HIAVDTETTS-LDVFE------AELAGISLCAEA---GKAFFIATTPDALERKEVVKQLK 401

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  +     N  ++ ++ KK  GI++    +  T + +             +AL +
Sbjct: 402 PLLENPAITKSGQNLKYDMLVLKKY-GIELAPISF-DTMLASYVLNPDEHHNLDDMALRY 459

Query: 119 -SEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                TK +E    GK     F         Y C  A+   A+QL  E  +  ++A  +L
Sbjct: 460 LGRTTTKYDELTGTGKQRRHIFEVEKEALTNYACQDAD--VAFQL-EEVLQAQLQAEPQL 516

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                  +  E  L  +  T+   G  ID + + ++ E    E + L ++I         
Sbjct: 517 LALC---TTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYAAAGSSF- 572

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L   LF    +     ++           + +LA    +     S   + KL 
Sbjct: 573 NIDSPKQLSHVLFTDLSLPTGKSTKTGF--STDVGVLEELAATYPIASDLLSYRTLQKLK 630

Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                 L + ++   GR+  +   +  + TGR S      QN+P +              
Sbjct: 631 GTYIEALPKIINPRTGRIHTSFNQH-ITATGRLSSSNPNLQNIPVRT------------- 676

Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   I S     L+ AD + IE R+ A ++G++  I AF NGE
Sbjct: 677 -----------ALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGE 725

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T    F T  +++S + R   K +   + Y     G AK          + ++ +
Sbjct: 726 DIHTATAQVIFGT--EEISSDMRRKAKEVNFGVLYGIQPFGLAKRLNIPQKEAKVIIETY 783

Query: 463 SQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGT 501
                           E                     S +  +Q      A+   + GT
Sbjct: 784 KAKYPQLFNVLRHIIEEGKEKGYVTTLLGRRRYIADLNSRNGTVQKAAERAAMNTPIQGT 843

Query: 502 ACELVKKAWRAKHQ 515
           A +++K A    +Q
Sbjct: 844 AADIIKCAMNLCYQ 857


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 93/496 (18%), Positives = 173/496 (34%), Gaps = 67/496 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L   L D+ +   AHN+ +   L     G ++    +  T + A   G       A  
Sbjct: 385 SGLAALLGDKKMSKTAHNAKYLMNLLLSA-GQEVKGLDF-DTMIAAHLLG---EKNLAIK 439

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW--QLFGEYCKRDVEATRE 172
            L F     ++ + + ++ R  K +I +       A     +  +L G +  +  E    
Sbjct: 440 DLVFEHFGIEIADIENILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQLAET--- 496

Query: 173 LFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              RL+ L +  E  L  +   +   G  +D DL+  + E   ++  KL+EDI       
Sbjct: 497 ---RLMDLFARVEMPLLPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQAGHS 553

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L   LF    + ++  ++    T   +L          DLIL         
Sbjct: 554 F-NIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYRMLVKLK 612

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              L+TL   V+   R   T      + TGR S      QN+P                 
Sbjct: 613 STYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP----------------- 655

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G     +R   IA  G  L+  D + I+ RVLA ++ +   I+AF + +DI
Sbjct: 656 -------VRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDI 708

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           +  T A+  N    KV+KEQR + K +   + Y   +    +  +         ++ + +
Sbjct: 709 HTATAARLLNVSPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFE 768

Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                + +                         +  S +  +++     A+   + GT+ 
Sbjct: 769 KYPRVAVYFAEIKQQARTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSA 828

Query: 504 ELVKKAWRAKHQGVLQ 519
           +++K A     + + +
Sbjct: 829 DIIKLAMVRLDEKIKE 844



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           VQ  S DI+   M    +          ++L VHDE++ E P      +   L   M+  
Sbjct: 823 VQGTSADIIKLAMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMSGA 882

Query: 655 PSWAKGLPLKAE 666
              A  +PLK E
Sbjct: 883 V--AFEIPLKVE 892


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 355 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 411

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 412 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 464

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 465 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 523

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 524 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 582

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 583 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 618

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 619 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 678

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 679 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 738

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 739 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 798

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 799 AVARLAKEVME 809



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 647 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 706

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 707 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 766

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 767 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 808


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/491 (16%), Positives = 158/491 (32%), Gaps = 61/491 (12%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L+  L ++ +   AHN+ +   L     G +I    +  T + A   G           L
Sbjct: 387 LIALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLG---EKNLGIKDL 441

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            F        E   +     +            +   Q    +    K    A       
Sbjct: 442 VFEHFGV---EIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAEINL 498

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           +    + E  L  +   +   G  +D DL+  + E +  +  KL+E I         +  
Sbjct: 499 IDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHSF-NIG 557

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L          DLIL            L+
Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYLD 617

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           TL   V+   R   T      + TGR S      QN+P                      
Sbjct: 618 TLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP---------------------- 655

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
               G     +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T 
Sbjct: 656 --VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATA 713

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST 469
           A+  N    +V+KEQR + K +   + Y   +    +  +   +     ++ + +     
Sbjct: 714 ARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRV 773

Query: 470 STF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           + +                         +  S +  +++     A+   + GT+ +++K 
Sbjct: 774 AIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833

Query: 509 AWRAKHQGVLQ 519
           A     + + +
Sbjct: 834 AMVRLDEKLKE 844



 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
           VQ  S DI+   M    +          ++L VHDE++ E PD  +  +  L  LM  
Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSAL--LMET 878


>gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/592 (16%), Positives = 186/592 (31%), Gaps = 107/592 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---- 62
           D ET    PL           A +   A++W+          E       +++ LR    
Sbjct: 385 DTETTGLNPLT----------AELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRCFFE 434

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
            E +  +  N  ++  +  K    ++  K  +  ++LA              LA  +  +
Sbjct: 435 AENIQKIGQNLKYDIKVLAKY---NVEVKGPLFDTMLAHYLINPDMRHNMDVLAETYLNY 491

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
                    LI +  K  +        +           EY   D + T +L +      
Sbjct: 492 TP--VSITELIGKKGKNQLSMRDVPLDKQT---------EYAVEDADITLQLKEHFEKEL 540

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   +   G  +D D +  L   + ++ + L   I  +    
Sbjct: 541 GEANTQKLFDDIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVAGEE 600

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              +     L + LF    +        T +       ++ LAKD  + R       + K
Sbjct: 601 FNIA-SPKQLGIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEIIRNILEYRGLAK 659

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   V    GR+         + TGR S      QN+P +            
Sbjct: 660 LKSTYVDALPLQVEESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER--------- 709

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             VR   I   +   L+ AD + IE R++A ++ E+  I+AF N
Sbjct: 710 ---------------GRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKN 754

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           GEDI+ +T +K F  PI++V++ QR+  K +   + Y     G +             + 
Sbjct: 755 GEDIHASTASKVFGVPIEEVTRAQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELID 814

Query: 461 QFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLI 499
            + +       +                        +   S +  ++      AV   + 
Sbjct: 815 TYYETYPKLKKYMSEQVHFARDNGYVKTILDRRRYLKDINSRNAVVRGAAERNAVNAPIQ 874

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           G+A +++K A             K + +LQ+  +L         E  +   +
Sbjct: 875 GSAADIIKIAMINIYNKLEAGNYKTKMLLQVHDELVFDVYKPELEKMTTLIK 926


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 410

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 464 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 581

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 582 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 617

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 678 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 798 AVARLAKEVME 808



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 705

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807


>gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 99/611 (16%), Positives = 196/611 (32%), Gaps = 104/611 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQYLR 62
           D ET    PL           A +   A++W+          E       +  +L  +  
Sbjct: 382 DTETTGLDPLV----------AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRPFFE 431

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
           +  +  +  N  ++  +  K    ++  K  +  ++LA              LA  +  +
Sbjct: 432 NTAIEKIGQNLKYDIKVLAKY---NVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNY 488

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
                    LI +  KG       D +  +  +       Y   D + T +L +      
Sbjct: 489 TP--VSITELIGK--KGKNQKSMRDVSVDDQTE-------YAVEDADITLQLKQHFEKEL 537

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     D E  L  +   +   G  +D+  +  L   +  + ++L  +I       
Sbjct: 538 DEAGTRKLFDDIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEAGEE 597

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +        T +   +   ++ LAKD  + +       + K
Sbjct: 598 F-NIGSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYRGLSK 656

Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           L     + L E V+ DGR+         + TGR S      QN+P +             
Sbjct: 657 LKSTYVDALPEQVAQDGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER---------- 705

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            VR   +       L+ AD + IE R++A ++ E+  I+AF +G
Sbjct: 706 --------------GRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDG 751

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           EDI+ +T AK FN P+++V++EQR+  K +   + Y     G +             +  
Sbjct: 752 EDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELIDN 811

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           + ++      +       +                         ++      AV   + G
Sbjct: 812 YYKSYPKLRNYMSELVEFARENGYVKTVLDRRRYLNGINSSNGVVRGAAERNAVNAPIQG 871

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           +A +++K A     + +        E      +    +    V +VP   +   K  +  
Sbjct: 872 SAADIIKIAMINIFEKL--------ENSDYKTKMLLQVHDELVFDVPNDELDAIKELIKT 923

Query: 561 VLPSSRRLVYS 571
            + S+ ++   
Sbjct: 924 EMESAFKMAVP 934



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 17/103 (16%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
             R    V  VL   R L      G  S          R            +Q  + DI+
Sbjct: 829 FARENGYVKTVLDRRRYLN-----GINSSNGVVRGAAERNAVNAP------IQGSAADII 877

Query: 611 CEGMKNA----TKNGYDI--VLTVHDEIVSETPDTPYFSVGTL 647
              M N       + Y    +L VHDE+V + P+    ++  L
Sbjct: 878 KIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAIKEL 920


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 351 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 407

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 408 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 460

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 461 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 519

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 520 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 578

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 579 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 614

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 615 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 674

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 675 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 734

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 735 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 794

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 795 AVARLAKEVME 805



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 643 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 702

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 703 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 762

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 763 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 804


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 410

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 464 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 581

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 582 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 617

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 678 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 798 AVARLAKEVME 808



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 705

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 108/631 (17%), Positives = 203/631 (32%), Gaps = 126/631 (19%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D      +   L   L  +    V  N+ F+  +F       I  K  +  +++A     
Sbjct: 409 DNLNLEIVLEKLRPILASDNYPKVFQNAKFDIDVFYHQ---GITVKGLVFDTMVASYVLH 465

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P       L  N  +   +  +G   ++    G                       YC  
Sbjct: 466 PE------LTHNLEDLCDRYLDGITSLSYKSLGIPGGKTIADLDITTT------ANYCGL 513

Query: 166 DVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D  AT  L ++L      IP      S+ E  L ++   + + G +I+++ +  L + + 
Sbjct: 514 DAYATYLLREKLQAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLE 573

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           ++   +++   +       +      L   LF    ++     +         S + +L 
Sbjct: 574 RDLADIEKKAYESIGETF-NLGSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQ 632

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            D  L         + KL     + L +       R+         + TGR S      Q
Sbjct: 633 GDHPLIDYILEHRTLSKLKSTYVDALPKLAEPKTARVHTDFN-QTITSTGRLSSSNPNLQ 691

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                           S  +R   I  +G  LV AD + IE R+
Sbjct: 692 NIPVRS------------------------EFSRRIRQAFIPEDGYLLVSADYSQIELRI 727

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++ E   ++A+ + +D++  T    F+    +++ E+R++GK +   + Y  GA+  
Sbjct: 728 LAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--GEITPEERSLGKTINFGVIYGMGAQ-- 783

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
              A    L ++Q  + +                             +K      ++ + 
Sbjct: 784 -KFARESKLTVEQGRKFI-----------------------------EKYHQRYAQVFQY 813

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
              +K Q + Q                                R    D  + L   R L
Sbjct: 814 LENSKKQAIAQ----------------------GYVETILGRRRYFNFDNPL-LKRLRGL 850

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY--DI 624
              D+  D   LN   +QL+R            +Q  S DI+   M    +    Y   +
Sbjct: 851 SLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARL 904

Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           +L VHDE+V E P   + S+   + + M + 
Sbjct: 905 LLQVHDELVLEVPREEWPSLESKIKTTMEEA 935


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 144/411 (35%), Gaps = 69/411 (16%)

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           A++    Y   D+   R   + +  L ++ E         +  RG R+D   +      +
Sbjct: 452 AYKALIPYLAGDLLMERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKL 511

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
                +L  +I+        +      L + LF   G+     ++    + +    + ++
Sbjct: 512 QSRIDELHTEIIGYAGKEF-NINSPKQLGVILFEDMGLSGGKKTKTGYSTSVD--VLEKI 568

Query: 274 AKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             D  +         + KLN+     L+  +S DGR+ GT      + TGR S      Q
Sbjct: 569 KNDHPIIPAILEYRQLTKLNSTYAQGLTAYISEDGRIHGTFN-QTITATGRISSTDPNLQ 627

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +R   I  +G   V AD + IE RV
Sbjct: 628 NIPMK------------------------LELGRLIRKAFIPEDGYVFVDADYSQIELRV 663

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           LA ++ +     AF N  DI+ TT ++ F+ PID+V+  QR   K +   + Y     G 
Sbjct: 664 LAHLSEDQVMQNAFLNHVDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVYGISAFGL 723

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HL 483
           ++            ++++    K+  +F D +  E+                      + 
Sbjct: 724 SEDLGISRKEAADYIEKYFATYKNIKSFLDRQVEEAKADGVVRTMFGRIRPVPELRSSNF 783

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
             +      A+   + GTA +++K A    +            +LQ+  +L
Sbjct: 784 MTRSFGERVAMNSPIQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDEL 834



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYF 642
            R++G ++  N  +Q  + DI+   M        K G    ++L +HDE++ ET      
Sbjct: 785 TRSFGERVAMNSPIQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVETAKDEVD 844

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 845 IVKEIME 851


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 92/573 (16%), Positives = 194/573 (33%), Gaps = 103/573 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53
             L +D ET SP P       A AE     L   ++ ++      V +       +  ++
Sbjct: 340 RVLSVDTETTSPNP-------AMAE-----LVGISFSNQEKTGFYVSVKNNASLFQDKSL 387

Query: 54  -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
              ++ ++L       V  V  N  ++ I+ +   G  + + ++  T + +         
Sbjct: 388 NLDEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRR 445

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            N        + L K       I             + T  +     +   EY   D + 
Sbjct: 446 HNM-------DDLAKEFLNYNTITYEDLVGTGKKKKELTDIDP----EQVAEYAAEDADV 494

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L++              L + E  L  +   +   G  +D+    +L     +E + 
Sbjct: 495 TFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 554

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276
           L+ +I +   G    +  T  L+  LF    + +V  ++    T   +L          +
Sbjct: 555 LESEIHRQAGGPFNIA-STKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPIIE 613

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L+    +      ++ L + V+   GR+  +     A+ TGR S      QN+P ++R
Sbjct: 614 KLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 672

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAG 394
                                       +R    + SN  +++  D + IE R++A I+ 
Sbjct: 673 ------------------------EGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHISK 708

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           +   ++A+ +G DI+  T A  +  P   V+ E R   KV+  ++ Y     G ++  + 
Sbjct: 709 DPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLRI 768

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                   ++++        ++ D                          S H   ++  
Sbjct: 769 PRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKSAKEAA 828

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
              A+   + GT+ +++K A    H+ + +   
Sbjct: 829 KRIAINSPIQGTSADMIKIAMIKIHEDIEKKHY 861


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 94/571 (16%), Positives = 177/571 (30%), Gaps = 101/571 (17%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               L+  T+ +   S L   L D +V     NS    +  KK    DI  +  +   +L
Sbjct: 344 GEGNLYIFTDINEAISILKPILTDISVKKYILNSKECTVFLKKH---DIELEGLVFDPLL 400

Query: 100 ARTNGLPSS-------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           A     PS        L +  L+L+  E + +      L   F             +   
Sbjct: 401 AYYLLKPSGKLPGLRDLLDQELSLSLPEDIKEDN----LYLVFMDNIFKLAEGMVPKLED 456

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           ++  +LF                     +D E  L  +   +   G ++D + +  L   
Sbjct: 457 MELIELF---------------------NDIEIPLITVLAELEYNGIKVDAEYLESLSRK 495

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             +E   L+  I +L      +      L   LF   G+ ++  ++           + +
Sbjct: 496 WEEELNGLESKIHELAGEKF-NINSPKQLGGILFEKLGLPVIKKTK--TGYSTGAKVLEK 552

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQ 326
           L     +  L S    ++KL     + L   ++ D GRL  +      + TGR S     
Sbjct: 553 LEDKHPIIPLISEYRQLMKLKSTYVDALPPMINPDTGRLHTSFN-QMVTATGRLSSTEPN 611

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            QN+P +                              +R   I       L+ AD + IE
Sbjct: 612 LQNIPVRT------------------------DEGREIRRAFITENEDWVLLAADYSQIE 647

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
            RVLA I+ ++    AF  G+DI+  T ++ F    D+V+   R   KV+   + Y    
Sbjct: 648 LRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVINFGIAYGMSP 707

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
              A+            + ++ +       + +                       +  S
Sbjct: 708 YGLARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAKTKGYVTTIFNRRRYIPEINS 767

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            +   +      A+   + GTA +++K A    +  +       ++   + +     V  
Sbjct: 768 RNYHRRSFAERTAINTPIQGTAADIMKLAMIKVYNRLKENGSPARILLQVHDELILEVPR 827

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                  R+           K  + + L S 
Sbjct: 828 EDLTEMARIVKSEMEKAVDMKVPLVVNLESG 858



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M        +NG    I+L VHDE++ E P      +  +  
Sbjct: 785 IQGTAADIMKLAMIKVYNRLKENGSPARILLQVHDELILEVPREDLTEMARIVK 838


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 101/613 (16%), Positives = 195/613 (31%), Gaps = 107/613 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSDLLQYL 61
           D ET S  PL          +A +   A++W+       PV          +  +L  + 
Sbjct: 374 DTETTSLDPL----------EAELVGIAFSWEAHKGFYLPVPEGREAAGEVL-EELRPFF 422

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSE 120
             +T+  V  N  ++  +        IP +  +  ++LA              LA  +  
Sbjct: 423 ESDTIEKVGQNLKYDIKVLSTY---GIPVRGPLFDTMLAHYLINPDMRHNMDVLAETYLN 479

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
           +         LI +  KG       D    +  +       Y   D + T +L +   P 
Sbjct: 480 YTP--VPISDLIGK--KGKNQLSMRDVPLEDQTE-------YAVEDADITLQLAQLFGPE 528

Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                      + E  L  +   +   G  +D   + KL   + ++ + L   I +    
Sbjct: 529 LREAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKIYEAAGE 588

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF    +        T +   +   ++ LAK+  + ++      + 
Sbjct: 589 EF-NIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVLDYRGLT 647

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L + V+   GR+         + TGR S      QN+P +           
Sbjct: 648 KLKSTYVDALPQQVAPSTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER-------- 698

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   I      +L+ AD + IE R++A ++ ED  I++F 
Sbjct: 699 ----------------GRQIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDTMIESFK 742

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            GEDI+  T A+ F  P+++V++EQR+  K +   + Y     G +       +     +
Sbjct: 743 RGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTNLSRTEAKELI 802

Query: 460 QQFSQNVKSTS-TFEDWEQAESHHLWMQD--------------------QYPEFAVKDKL 498
             + +          D       H ++Q                          AV   +
Sbjct: 803 DTYYKTYPKLRNYISDQIDFAREHGYVQTVLGRRRYLKDINGSNAVVRGAAERNAVNAPI 862

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            G+A +++K A    +Q + +             +    +    V +  R         +
Sbjct: 863 QGSAADIIKIAMIRIYQKLRE--------GNFKTRMLLQVHDELVFDCYRGEADTVSALI 914

Query: 559 HIVLPSSRRLVYS 571
              + S+  L   
Sbjct: 915 KSEMESAYELAVP 927


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 100/609 (16%), Positives = 204/609 (33%), Gaps = 105/609 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQYLR 62
           D ET S   L           A +   A++W+          E+      +  +L  +  
Sbjct: 374 DTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEELRNFFE 423

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
           ++ +  +  N  ++  +  K     I  K  +  +++A              LA  +  +
Sbjct: 424 NDKIEKIGQNLKYDIKVLDKY---KIDVKGALFDTMIAHYLINPDMRHNMDVLAETYLNY 480

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
               +    LI +  K           +           EY   D + T +L        
Sbjct: 481 TP--QPISELIGKKGKNQGSMRDVALDKQT---------EYAVEDADITFQLKNLFEKEL 529

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                    ++ E  L  +   +   G ++D + +  L E +A + K L+  I +     
Sbjct: 530 EEAETRKLFNEIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYEAAGEE 589

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              S     L + LF    +        T +   S   ++ LA++  + +       ++K
Sbjct: 590 FLIS-SPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVLDYRGLVK 648

Query: 292 L-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   V  + GR+        A+ TGR S      QN+P +            
Sbjct: 649 LQNTYVDALPNQVERTTGRVHTDYVQTTAA-TGRLSSNNPNLQNIPIRTER--------- 698

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             VR   +       L+ AD + IE R++A ++ E+  I+AF +
Sbjct: 699 ---------------GKQVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQAFKD 743

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           GEDI+ +T AK FN P+++V++EQR+  K +   + Y     G +       S     + 
Sbjct: 744 GEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRSESKELID 803

Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499
            + +     S F                        +   S +  ++      AV   + 
Sbjct: 804 TYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLKDINSRNAIVRGAAERNAVNAPIQ 863

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G+A +++K A    H+ + +             +    +    V +  +  + + ++ + 
Sbjct: 864 GSAADIIKLAMINIHKKLKEENY--------KTKMLLQVHDELVFDAHKDELEKVQKMIK 915

Query: 560 IVLPSSRRL 568
             + ++ +L
Sbjct: 916 SEMENAYKL 924


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 149/413 (36%), Gaps = 59/413 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + ER L  +   +   G  +D   +  +     +  + L+  I         +   T  L
Sbjct: 498 EVERPLVPVLVEMERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHPF-NVASTREL 556

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF+   + +V   +           + +LA+   L RL     ++ KL     + L 
Sbjct: 557 AQVLFVELELPVVKRLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALP 614

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + V   DGR+  T    GA+ TGR S      QN+P +                      
Sbjct: 615 QLVDPADGRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRT--------------------- 652

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                S  +R   +A  G +L+ AD + IE R+LA  + +   ++AF + ED++  T A+
Sbjct: 653 ---ELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAE 709

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F    ++V+ +QR I KV+   + Y     G ++      S     + ++         
Sbjct: 710 TFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRR 769

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +W                      +  + +  +++     A+   + GTA ++VK A 
Sbjct: 770 YIEWAVEEARAKGESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADVVKIAM 829

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
              H  + Q  ++         +    +  R +  V  LV R  +    + +P
Sbjct: 830 IRVHAALAQERREARLLLQVHDELVLEVPERELEPVEALVRREMEGAARLKVP 882



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 21/80 (26%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS------ 649
           +Q  + D++   M          +    ++L VHDE+V E P+     V  L        
Sbjct: 817 IQGTAADVVKIAMIRVHAALAQERREARLLLQVHDELVLEVPERELEPVEALVRREMEGA 876

Query: 650 ---------LMTKNPSWAKG 660
                     +    +WA+G
Sbjct: 877 ARLKVPLEVQVGHGQTWAEG 896


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 103/590 (17%), Positives = 187/590 (31%), Gaps = 95/590 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQY 60
            ID ET S            AE   I++C   W          T++       P  L   
Sbjct: 366 SIDTETTSLNTFE-------AELVGISIC---WKPGEAYFIHFTDKELSAKTFPGKLQDV 415

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +  +     N  ++ ++ K    + +    +  T + +             LA     
Sbjct: 416 LENPDIKKTGQNLKYDILVLKNH-HVRLAPVGF-DTMLASYVINPEEKHNLDDLAKKHLN 473

Query: 121 HLT-----KMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELF 174
           H T         GK  I            Y C  A+  +Q  Q        + E  +   
Sbjct: 474 HRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKILLGENSELEQLCV 533

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                    E  L  +   +   G  +D   + +  E + ++  +L E I   T G I +
Sbjct: 534 N-------IEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYD-TAGTIFN 585

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L   LF + G+     ++      ++ +   S I  +AKDL+  R +       
Sbjct: 586 IDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLEYR-SLQKLKTT 644

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +   +  + TGR S      QN+P                  
Sbjct: 645 YIDALPKILNPKTGRVHTSFNQH-ITATGRLSSSNPNLQNIP------------------ 685

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
              I  PLG     +R   I S + + L+ AD + IE R+ A I+ +   I AF N EDI
Sbjct: 686 ---IRTPLG---REIRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHLIDAFRNREDI 739

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T    F+T  D ++K+ R   K +   + Y     G A+            +  +  
Sbjct: 740 HTATAKTIFDT--DDITKDMRRKAKEVNFGVLYGIQPYGLAQRLNISQKEAKAIIDTYIS 797

Query: 465 NVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLIGTAC 503
                 +       E+                      +  ++      A+   + GTA 
Sbjct: 798 KYPGLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIRMAAERAAMNTPIQGTAA 857

Query: 504 ELVKKAWRAKHQGVLQLWK------DLTEGFACVVQEGGSISARRVANVP 547
           +++K A     + + +          + +       E    +   +A   
Sbjct: 858 DIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFETTEEEKAALAEIAEGC 907


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 88/534 (16%), Positives = 178/534 (33%), Gaps = 76/534 (14%)

Query: 31  TLCAYAW-DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
            +  +A  ++      D  E +    +   ++ DE++    ++               + 
Sbjct: 332 LIVGFAIYNNSEAYYIDI-ENAIKCQNFQNFINDESIEKYGYDIKK---CINAAKWHGLE 387

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
            K ++    LA     PS          + ++   + + +     + KG+    P     
Sbjct: 388 IKNYVFDLQLASYILNPSLKDEIRSVCEYYDYYDVLYDEEV----YGKGAKKKIPETTAI 443

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208
           A+H+   Q    Y  +D    +   +    L  D E  +  +  ++  +G +ID D++  
Sbjct: 444 ADHLIK-QAKAIYVLKDKAIEKLKQENQFDLYKDVEMPVAKILASMEYQGAKIDKDVLKD 502

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L+    +E + L+++I +L +     +     L   LF   G+     ++    + +   
Sbjct: 503 LENQFGKEIEVLEKEIHQLANKNFNIA-SPKQLGEVLFEDLGLPNGKKTKTGYSTSVDIL 561

Query: 269 NITQLAKDLILNRLA---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           N  +    +I   L     S      +  L E +  DG++         ++TGR S    
Sbjct: 562 NKLKDVHPIINKVLQYRTLSKLYSTYIIGLQEQIFVDGKIHTIYN-QALTQTGRLSSTDP 620

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R   I      LV  D + IE
Sbjct: 621 NLQNIP------------------------VKTAEGKLIRKAFIP-EYDYLVSFDYSQIE 655

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
            RVLA +A     IKAF   +DI+  T ++ F    D+V    R   K +   + Y    
Sbjct: 656 LRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFGIIYGMSD 715

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
              A+      +     ++++ +N     T+ D                       +   
Sbjct: 716 FGLAEQVGVPVNEARNFIKRYFENYPEIKTYMDNNIEFCKKNGYVTTMLNRKRFIREINE 775

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            +   Q+     A+   + G+A +++K A             K + +LQ+  +L
Sbjct: 776 KNYMRQELGKRLAMNSPIQGSAADIIKVAMIKVDELFKKHNLKSKMILQVHDEL 829



 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 15/152 (9%)

Query: 497 KLIGTACELVKKAWR----AKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551
           ++ G   + V    R    A + G++    D        V    +    +R       + 
Sbjct: 685 EIFGVDEDEVDSTMRRNAKAVNFGIIYGMSDFGLAEQVGVPVNEARNFIKRYFENYPEIK 744

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
                ++     +       + K     +N      MR+   G +L  N  +Q  + DI+
Sbjct: 745 TYMDNNIEFCKKNGYVTTMLNRKRFIREIN--EKNYMRQEL-GKRLAMNSPIQGSAADII 801

Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSET 636
              M               ++L VHDE++ + 
Sbjct: 802 KVAMIKVDELFKKHNLKSKMILQVHDELIFDV 833


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 104/560 (18%), Positives = 181/560 (32%), Gaps = 93/560 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQSAMPSDLLQY 60
           ++ +D ET S                   L   +   E    +       S  P   L+ 
Sbjct: 372 RIAVDTETTS------------LNTFEAELAGISISTEARKARFIALANSSLNPQSALEL 419

Query: 61  LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           LR    +  +     N  ++ ++ KK  GID+    +  T + +             LA 
Sbjct: 420 LRPLLENPELPKTGQNLKYDILVLKKY-GIDLTPVGF-DTMLASYVLDPEEKHNLDDLAA 477

Query: 117 NFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               + T   E     GKA +  F         Y C  A+     +   E  ++ +E  +
Sbjct: 478 RHLGYKTTTFEELTGTGKAKLHIFDVEPEQLSDYACQDADLALQLE---EIFRKKLEGEK 534

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           EL          E  L  +   +   G  ID   + K  E + +E + L E I   +   
Sbjct: 535 ELLWLC---EHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYAASGAP 591

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSG 286
             +      L   LF + G+     ++    + +    + +LA+       +L       
Sbjct: 592 F-NIDSPKQLSNILFNVLGLPTKKSTKTGFSTNVE--VLEELAELHPVVASLLEYRTLQK 648

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L + V+   GRL  +   +  + TGR S      QN+P              
Sbjct: 649 LKTTYIDALPKIVNPLTGRLHTSFNQF-ITATGRLSSSNPNLQNIP-------------- 693

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                  I  PLG     +R   I S   K L+ AD + IE R+ A I+G+   I+AF N
Sbjct: 694 -------IRSPLG---KEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRN 743

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            EDI+  T    F    D+++ + R   K +   + Y     G +K      S     + 
Sbjct: 744 REDIHTATARVIFG--SDEITPDMRRKAKEVNFGVLYGIMPFGLSKRLNIPRSEAIAIID 801

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            +                                      S +  +Q      A+   + 
Sbjct: 802 TYKAKYPGLFLALQEIIETGKKDGYVSTLLGRRRYIADLNSRNSNIQKAAERAAMNTPIQ 861

Query: 500 GTACELVKKAWRAKHQGVLQ 519
           GTA +++K A     + + +
Sbjct: 862 GTAADIIKCAMNLCSERLRK 881


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 94/575 (16%), Positives = 194/575 (33%), Gaps = 107/575 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53
             L +D ET SP P       A AE     L   ++ ++      V +       +  ++
Sbjct: 340 RVLSVDTETTSPNP-------AMAE-----LVGISFSNQEKTGFYVSVKNNASLFQDKSL 387

Query: 54  -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
              ++ ++L       V  V  N  ++ I+ +   G  + + ++  T + +         
Sbjct: 388 NLDEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRR 445

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            N        + L K       I             + T  +     +   EY   D + 
Sbjct: 446 HNM-------DDLAKEFLNYNTITYEDLVGTGKKKKELTDIDP----EQVAEYAAEDADV 494

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L++              L + E  L  +   +   G  +D+    +L     +E + 
Sbjct: 495 TFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 554

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+ +I +   G    +  T  L+  LF    + +V  ++        H  + +LA +  +
Sbjct: 555 LESEIHRQAGGPFNIA-STKELQKILFDDLKLRIVKKTQTGF--STDHEVLEELAGEHPI 611

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                      KL     + L + V+   GR+  +     A+ TGR S      QN+P +
Sbjct: 612 IEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIR 670

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392
           +R                            +R    + SN  +++  D + IE R++A I
Sbjct: 671 DR------------------------EGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHI 706

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           + +   ++A+ +G DI+  T A  +  P   V+ E R   KV+  ++ Y     G ++  
Sbjct: 707 SKDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTPYGLSRNL 766

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487
           +         ++++        ++ D                          S H   ++
Sbjct: 767 RIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKSAKE 826

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                A+   + GT+ +++K A    H+ + +   
Sbjct: 827 AAKRIAINSPIQGTSADMIKIAMIKIHEDIEKKHY 861


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 76  KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 132

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 133 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 185

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 186 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTENTGKRSTSAAVLEAL 244

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 245 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 303

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 304 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 339

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 340 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRTAKTINYGVLYGMSAHH 399

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 400 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 459

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 460 KSVREAAERMAFNMPVQGTAADLMKLAMVKLLPRLEEMGARMLLQVHDELVLEAPKERAE 519

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 520 AVARLAKEVME 530



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 368 MFGVPREAVDPLMRRTAKTINYGVLYGMSAHHLSQELAIPYEEAQAFIERYFQSFPKVRA 427

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 428 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 487

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 488 VKLLPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 529


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/532 (17%), Positives = 181/532 (34%), Gaps = 93/532 (17%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D+ E  A+  +   +   +++  +AHN  ++  +  +     +     +  +++A     
Sbjct: 416 DKKEIQAIVDEFKPFFEHKSIEKIAHNMKYDIQVLHRY---GVQFAGPLFDTMIAHYLIQ 472

Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           P S +    LA  +  +     E   LI +  KG  +               +   +Y  
Sbjct: 473 PESKQGMDFLAEYYLNYTPVSIE--TLIGKKGKGQGNMGDLQP---------EAISDYAC 521

Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T +L +   P            D E  L  +   + + G  ID+  +    + +A
Sbjct: 522 EDADITFQLKQLFAPQIEKDHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLA 581

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +E + L++ I +L      +      L   LF    I        T +   S   + Q  
Sbjct: 582 EETEGLEKRIKELAGMDF-NVDSPKQLGDVLFEHMKISSKAKKTKTGQYATSEDILQQHK 640

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            D  +         + KL     + L       DGR+  +      + TGR S      Q
Sbjct: 641 NDHEIIPCILDYRQMKKLKSTYVDPLPTMKDPVDGRVHTSY-MQTVTATGRLSSNNPNLQ 699

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P +                              +R   IA     +L+ AD + IE R
Sbjct: 700 NIPIRSER------------------------GKEIRRAFIARSKDFQLMSADYSQIELR 735

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           ++A +A +   I+AF +  DI+  T AK F+  +D V+K+QR+  K +   + Y   A  
Sbjct: 736 IIAALADDTNMIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGIIYGQSAFG 795

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
             +      +     +  +     +  T+ D                          S +
Sbjct: 796 LSQNLGISRTEAKQIIDSYFAQYSTIKTYMDNAVKDARENGYVETIMQRRRYLPDINSAN 855

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
             ++      AV   + G+A ++VK A           + K + +LQ+  +L
Sbjct: 856 AVVRGFAERNAVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDEL 907


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           + D E +   D  E S + S       +  +    +N   + I  K     +I  +    
Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395

Query: 96  TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
              +A         +S   + +A+ +     K +E            + S  Y+      
Sbjct: 396 DITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206
           +  +        ++     E  + L+ +S        E  L  +   +   G ++D  ++
Sbjct: 450 LAEYMGQIICTVKETVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L     +    L+++I +L+     +      L + LF    + ++  ++       +
Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320
              + +L     +    +    I+KLN+     L   ++ +  R+  +      + TGR 
Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   IA +  KLV AD
Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   + 
Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A             ++ +         F D                      
Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
            + +S +   +++   FA+   + G+A +++K A    H+           +LQ+  +L
Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%)

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
              Q   + +   S  E+  +A  HH  +  +         +     EL   A +A + G
Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           ++    D        +       A+           + K  +   +  +    Y+    +
Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774

Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628
                             GK    N  +Q  + DI+   M N  K          ++L V
Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834

Query: 629 HDEIVSETPDTPYFSVGTLCS 649
           HDE++ E  D     V  +  
Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/544 (17%), Positives = 185/544 (34%), Gaps = 88/544 (16%)

Query: 27  QAVITLCAYAWDDEP---VKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKK 82
            A +   +++++      V   +  E++  +    + +  +E +  +  N  ++  +   
Sbjct: 390 HAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVPFFENENIEKIGQNLKYDLKILSN 449

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             G+ +  K +  T +               LA  + ++  K  E   LI +  KG    
Sbjct: 450 Y-GVTVKGKLF-DTMIAHYLINPDMRHNMDILAETYLKYSPKSIE--TLIGK--KGKNQL 503

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFK------------RLIPLSDGERDLWLL 190
              D    +         EY   D + T +L +            +L    + E  L  +
Sbjct: 504 SMRDVPLEDI-------KEYAAEDADVTLQLKEIFTAELEKTETKKLFD--EIEIPLVSV 554

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G R+D++ + ++ + +  E K L+E I +        +     L   LF    
Sbjct: 555 LADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYETAGEKFNLA-SPKQLGDILFDKLK 613

Query: 251 IDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----TLSEAVSSDGR 304
           I      +  T +       +T LA D  + +       ++KL       L E V     
Sbjct: 614 IGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQMVKLQSTYILALPEQVDKKTL 673

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
              T      + TGR S      QN+P +                              +
Sbjct: 674 RVHTDYMQTVAATGRLSSNNPNLQNIPIRTER------------------------GRQI 709

Query: 365 RSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A      L+ AD + IE R++A ++GE+  I AF NGEDI+  T AK F+  +++
Sbjct: 710 RKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGEDIHRATAAKVFDVALEE 769

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           VS+EQR+  K +   + Y     G +       S     +  + +      ++   +   
Sbjct: 770 VSREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRSESAALIDAYYKTYPRLKSYISEQVDF 829

Query: 480 SHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +                         ++      AV   + G+A +++K A    H+ + 
Sbjct: 830 AREKGYVQTILGRRRYLKDINSANAVVRSAAERNAVNAPIQGSAADVIKIAMINIHKKLR 889

Query: 519 QLWK 522
           +   
Sbjct: 890 EENW 893


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/548 (16%), Positives = 170/548 (31%), Gaps = 108/548 (19%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           +WD      +P              V +N+    +            +       LA   
Sbjct: 366 VWDLLADETIP-------------KVTYNAK--DVC-NACKAKGTELRGLCFDIQLAAYL 409

Query: 104 GLPSSLK-----NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
             P++ K      AC  L  +                 K  + +P Y          W  
Sbjct: 410 LEPTAAKYPLTELACQHLGLAVGDM------------DKEHLGTPDYA--------GWAA 449

Query: 159 FGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                   V   + +   L  L  + E  L  +   +   G R+DL  +  L + I    
Sbjct: 450 EVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEIAGIRVDLTQLDALAQEITDRI 509

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274
           + L  +I +L      +   T  L   LF +  + ++  ++    T   +L         
Sbjct: 510 ETLLTEIYQLAGQEF-NVNSTRQLGHILFEVLKLPVIKKTKTGYSTDAEVLEKLAGQHPL 568

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            D +L     +      L+ L + + +D GR+         + TGR S      QN+P +
Sbjct: 569 IDCLLEYRLLTKLKSTYLDGLRDLIRADTGRIHTHFN-QTVTATGRLSSSEPNLQNIPIR 627

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392
                                         +R   +   G   ++ AD + IE RVLA +
Sbjct: 628 T------------------------EIGRRIRELFVPGPGYDWIMSADYSQIELRVLAHM 663

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           +G+D  I AF + +DI+  T A+ F  P+ +V+ + RA  K +   + Y     G ++  
Sbjct: 664 SGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRARAKAVNFGIVYGISDFGLSRDI 723

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------------------- 488
                  G  +  +    +    + D     +                            
Sbjct: 724 GVSRKEAGQYIDSYFAKYRGVKNYIDNVINLARQQGYVTTLFGRRRFLPDINSGNFNQRA 783

Query: 489 -YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537
                A+   + GTA +++KKA           R K + +LQ+  +L    A   +   +
Sbjct: 784 FAERTAMNTPIQGTAADIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVA 843

Query: 538 ISARRVAN 545
              ++   
Sbjct: 844 QLVKQAME 851



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DI+ + M          +    ++L VHDE+V E  +     V  L    M   
Sbjct: 794 IQGTAADIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVAQLVKQAMEDA 853

Query: 655 PSWAKGLPLKAE 666
            + A  +PL A+
Sbjct: 854 VTLA--VPLVAD 863


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/608 (14%), Positives = 181/608 (29%), Gaps = 95/608 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKL-WDRTEQSAMPSDL 57
             +  D ET       +           +   +++        V +  +  E   +  + 
Sbjct: 363 KSICFDTETT-GTDANQC---------ELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEF 412

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
                +  +  +  N  F+ ++ K    + +  + +  T +        +      LA N
Sbjct: 413 KPIFENPAIGKIGQNIKFDMLVLK-YYNVTMQGELF-DTMLAHYIIDPDTRHNMDILAEN 470

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +  +         LI    KG       +  +           +Y   D + T +L +  
Sbjct: 471 YLGYSP--VSITTLIGAKGKGQGTMRDVEIEKI---------KDYAAEDADVTLQLKEVF 519

Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            P           +D E  L  +   I   G RID D + +  + +  +  KL++ + + 
Sbjct: 520 EPKLQQVGGTKLATDIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTVYEK 579

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  +     L   LF    +D       T +       +  LA    + R      
Sbjct: 580 AGVKFNIA-SPKQLGEVLFEKLNLDAKAKKTKTGQYQTGEDVLLALANKSDIVRDILDFR 638

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V+   GR+  +      + TGR S      QN+P +        
Sbjct: 639 QLQKLKSTYVDALPLMVNPKTGRVHTSYN-QAVAATGRLSSNNPNLQNIPIRTER----- 692

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 VR   I   +   +V AD + IE R++A I+ +   + 
Sbjct: 693 -------------------GREVRKAFIPRNDDHVIVSADYSQIELRIIAEISKDANMMD 733

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456
           AF  G DI+  T AK +   +D+V    R   K +   + Y   A    +          
Sbjct: 734 AFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKAVNFGIIYGQSAFGLSQNLNIPRKEAA 793

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             + Q+         +       +                      +  ++      A+ 
Sbjct: 794 DIIDQYFAQYPGIKNYMSDTMNFARENGFVQTLMGRRRYLRDINSANATVRGYAERNAIN 853

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             + G+A +++K A    H+   +   D         +    +    +  V  ++M+  +
Sbjct: 854 APIQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDELVFDVHQSEIEIVKPIIMQNMQ 913

Query: 556 RDVHIVLP 563
                 +P
Sbjct: 914 TAFKTEVP 921


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 163/488 (33%), Gaps = 65/488 (13%)

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           G+   L      L   E L    E   ++  +     ++ P    R    +  +  GE  
Sbjct: 346 GVRGILAKDLAVLALREGLDLFPEDDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAGERA 405

Query: 164 KRDVEATRELFKRL-------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                  + L +RL           + E+ L  +   +   G R+D+  +  L   +  E
Sbjct: 406 LLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQALSLEVEAE 465

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK- 275
            ++L+E++ +L      +      L   LF   G+  +  +E T K   S + +  L + 
Sbjct: 466 VRQLEEEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREA 524

Query: 276 ----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
               D IL     +      ++ L   V    GRL        A+ TGR S      QN+
Sbjct: 525 HPIVDRILQYRELTKLKNTYIDPLPALVHPKTGRLHTRFN-QTATATGRLSSSDPNLQNI 583

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G  LVV D + IE RVLA
Sbjct: 584 PVRT------------------------PLGQRIRRAFVAEEGWVLVVLDYSQIELRVLA 619

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----K 446
            ++G++  I+ F  G DI+  T +  F    + V    R   K +   + Y   A     
Sbjct: 620 HLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLYGMSAHRLSG 679

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------M 485
                       ++++ Q+      + +    E                          +
Sbjct: 680 ELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEEGRRRGYVETLFGRRRYVPDLNARVKSV 739

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW-KDLTEGFACVVQEGGSISARRVA 544
           ++     A    + GTA +L+K A       + +L  + L +    +V E     A RVA
Sbjct: 740 REAAERMAFNMPVQGTAADLMKLAMVRLFPRLQELGARMLLQVHDELVLEAPKDRAERVA 799

Query: 545 NVPRLVMR 552
            + + VM 
Sbjct: 800 ALAKEVME 807



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G + E V    R   + +   +   ++              A            + + 
Sbjct: 645 MFGVSPEGVDPLMRRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERYFQSYPKVRA 704

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 705 WIEGTLEEGRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAM 764

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P      V  L   +M
Sbjct: 765 VRLFPRLQELGARMLLQVHDELVLEAPKDRAERVAALAKEVM 806


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           + D E +   D  E S + S       +  +    +N   + I  K     +I  +    
Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395

Query: 96  TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
              +A         +S   + +A+ +     K +E            + S  Y+      
Sbjct: 396 DITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206
           +  +        ++     E  + L+ +S        E  L  +   +   G ++D  ++
Sbjct: 450 LAEYMGQIICTVKETIPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L     +    L+++I +L+     +      L + LF    + ++  ++       +
Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320
              + +L     +    +    I+KLN+     L   ++ +  R+  +      + TGR 
Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   IA +  KLV AD
Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   + 
Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A             ++ +         F D                      
Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
            + +S +   +++   FA+   + G+A +++K A    H+           +LQ+  +L
Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%)

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
              Q   + +   S  E+  +A  HH  +  +         +     EL   A +A + G
Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           ++    D        +       A+           + K  +   +  +    Y+    +
Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774

Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628
                             GK    N  +Q  + DI+   M N  K          ++L V
Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834

Query: 629 HDEIVSETPDTPYFSVGTLCS 649
           HDE++ E  D     V  +  
Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/575 (15%), Positives = 191/575 (33%), Gaps = 99/575 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSD 56
           + +   D ET S   L           A +   ++++           E    +      
Sbjct: 357 LKEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRV 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC 113
           L   L +  +  +  N  ++ ++ K   G+ +   R+  T + +       +      A 
Sbjct: 407 LKPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVRF-DTMLASYVLNPDKTHNLDDLAA 464

Query: 114 LALNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L     ++   + +GK+  + +         Y C  A+     +   E    + E  +
Sbjct: 465 DHLGLETVKYADLVGKGKSEKSIYEVEPKTLSDYACQDADVALQLKNVLEKALGENEPLK 524

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           ++ + L      E  L  +   +   G R+D+ ++  L E +  E  ++ + I       
Sbjct: 525 KICEEL------EFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSKIIYDAAGEA 578

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +     ++           + +LA+   + +      ++ K
Sbjct: 579 F-NLDSPKQLSEILFEKLKLPAKRRTK--TGYSTDVRVLEELAESFPVAKQILEYRSLQK 635

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   V    GR+  +   + A+ TGR S      QN+P +            
Sbjct: 636 LKSTYVDALPNLVHPKTGRIHTSFNQHIAA-TGRLSSSNPNLQNIPIRT----------- 683

Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S+    L+ AD + IE R+ A ++G+   + AF N
Sbjct: 684 -------------EIGREIRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTMLGAFQN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            EDI+ TT    F    D+V+K+ R   K +   + Y     G A+      +     + 
Sbjct: 731 REDIHSTTAKLIF--ETDEVTKDMRRKAKEVNFGVLYGIMPFGLAQRLDISQAEAKEIIS 788

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           Q+ +      ++ +                          S +  ++      A+   + 
Sbjct: 789 QYKEKYPMIFSYLEGILDKARASGYVETLLGRRRYIRDLNSKNFSIRSAAERAAINTPIQ 848

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524
           GTA +++KKA             + + +LQ+  +L
Sbjct: 849 GTAADMIKKAMLGIASDIHKQSLRSRMILQVHDEL 883


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/492 (19%), Positives = 166/492 (33%), Gaps = 75/492 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L     + +  N  F  +L  +  GI + +   I     A   G   S   A LA 
Sbjct: 484 LKPILESRGHLKIGLNVKFSAVLLAQH-GIVMQNHDDIELISYALDAG-RGSHDLASLAK 541

Query: 117 NFS-----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVEA 169
            +       H      G+  +A F + +ID             ++ WQ+         E 
Sbjct: 542 RWLGHATVSHGELTGSGRNRLA-FDQVAIDRATAYAAEYADMTLRLWQVLKPRLV--AER 598

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +++ L      ER +      +  RG  ID  ++ +L    AQ   +L+ +I +L  
Sbjct: 599 MNTVYETL------ERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAG 652

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288
             I +      +   +F   G+     ++ T     S   + +LA+      R       
Sbjct: 653 EPI-NVGSPKQIGEIMFGKMGLPGGSKTK-TGAWSTSAQILDELAEQGHDFPRKILDWRQ 710

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KL     + L E V    R   T     A+ TGR S      QN+P            
Sbjct: 711 VSKLKSTYTDALPEYVHPQTRRVHTTYALAATTTGRLSSNEPNLQNIP------------ 758

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA+ G KLV AD + IE R+LA IA      +AF 
Sbjct: 759 ------------VRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFR 806

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +G DI+  T ++ F  P+  +  E R   K +   + Y     G A             +
Sbjct: 807 DGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPREEAAAYI 866

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++ +       + D                     +   +S +   +      A+  +L
Sbjct: 867 KKYFERFPGIRAYMDATREFCREHGYVTTLFGRKCHYPDIKSPNPSHRAFNERAAINARL 926

Query: 499 IGTACELVKKAW 510
            G+A +++++A 
Sbjct: 927 QGSAADIIRRAM 938



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655
           Q  + DI+   M               ++L VHDE++ E PD     ++  +  +M   P
Sbjct: 927 QGSAADIIRRAMARMDDALAARNLSARMLLQVHDELIFEVPDDEVAATLPVVQHVMQDAP 986


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/611 (16%), Positives = 199/611 (32%), Gaps = 104/611 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQYLR 62
           D ET    PL           A +   A++W+          E      A+  +L  +  
Sbjct: 382 DTETTGLDPLV----------AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRPFFE 431

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121
              +  +  N  ++  +  K    D+  K  +  ++LA              LA  +  +
Sbjct: 432 HTGIEKIGQNLKYDIKVLAKY---DVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNY 488

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179
                    LI +  KG       D       +       Y   D + T +L +      
Sbjct: 489 TP--VSITELIGK--KGKNQKSMRDVPLDQQTE-------YAVEDADITLQLKQHFEKEL 537

Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                    +D E  L  +   +   G  +D++ +  L   +  + ++L  +I +     
Sbjct: 538 DEAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEAGEE 597

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
            + S     L   LF    +        T +   +   ++ LAKD  + +       + K
Sbjct: 598 FKIS-SPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYRGLSK 656

Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           L     + L E V+ DGR+         + TGR S      QN+P +             
Sbjct: 657 LKSTYVDALPEQVAQDGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER---------- 705

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            VR   +       L+ AD + IE R++A ++ E+  I+AF +G
Sbjct: 706 --------------GRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDG 751

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           EDI+ +T AK FN P+++V++EQR+  K +   + Y     G +             +  
Sbjct: 752 EDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELIDN 811

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           + ++      +       +                         ++      AV   + G
Sbjct: 812 YYKSYPKLRNYMSELVDFARENGYVKTVLDRRRYLNGINSSNGVVRGAAERNAVNAPIQG 871

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           +A +++K A     + +        E      +    +    V +VP + +   K  +  
Sbjct: 872 SAADIIKIAMINIFEKL--------ENSDYKTKMLLQVHDELVFDVPNIELDDIKNLIKT 923

Query: 561 VLPSSRRLVYS 571
            + S+ ++   
Sbjct: 924 EMESAFKMAVP 934



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 20/106 (18%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
             R    V  VL   R L      G  S          R            +Q  + DI+
Sbjct: 829 FARENGYVKTVLDRRRYLN-----GINSSNGVVRGAAERNAVNAP------IQGSAADII 877

Query: 611 CEGMKNA----TKNGYDI--VLTVHDEIVSETPDTPYFSVGTLCSL 650
              M N       + Y    +L VHDE+V + P      +  + +L
Sbjct: 878 KIAMINIFEKLENSDYKTKMLLQVHDELVFDVP---NIELDDIKNL 920


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           + D E +   D  E S + S       +  +    +N   + I  K     +I  +    
Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395

Query: 96  TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
              +A         +S   + +A+ +     K +E            + S  Y+      
Sbjct: 396 DITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206
           +  +        ++     E  + L+ +S        E  L  +   +   G ++D  ++
Sbjct: 450 LAEYMGQIICTVKETVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L     +    L+++I +L+     +      L + LF    + ++  ++       +
Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320
              + +L     +    +    I+KLN+     L   ++ +  R+  +      + TGR 
Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   IA +  KLV AD
Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   + 
Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A             ++ +         F D                      
Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
            + +S +   +++   FA+   + G+A +++K A    H+           +LQ+  +L
Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%)

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
              Q   + +   S  E+  +A  HH  +  +         +     EL   A +A + G
Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           ++    D        +       A+           + K  +   +  +    Y+    +
Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774

Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628
                             GK    N  +Q  + DI+   M N  K          ++L V
Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834

Query: 629 HDEIVSETPDTPYFSVGTLCS 649
           HDE++ E  D     V  +  
Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/491 (18%), Positives = 160/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +     + +  R+     +      T +   
Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTP-EGVARRYGGEWTEEAGERATLSE-- 410

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 464 AEEIARLEAEVFRLAGHSF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR S      
Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 581

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 582 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 617

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            + ++ Q+      + +    E                        
Sbjct: 678 LSQELAIPYEEAQAFIGRYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 798 AVARLAKEVME 808



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIGRYFQSFPKVRA 705

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 138/705 (19%), Positives = 236/705 (33%), Gaps = 184/705 (26%)

Query: 2   SKLFIDIET-----RSPQPLPKVGVWAYAEQAVITL-----CAYAWDDEPVKLWDRTEQS 51
            +L  D+ET      SP P   VG         I L     C +                
Sbjct: 353 ERLIFDVETNSLNLFSPVPAKVVG---------IALTHTAGCGWYIPLG------HRSGQ 397

Query: 52  AMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
            +P ++++  L+    D     VAHN  F+       +G+D+P   +  T++ A   G  
Sbjct: 398 QLPIAEVVAALQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLSF-DTAIAAALLGKR 455

Query: 107 SSLKNACLA--LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            SLK+   A   +  +   +M   + LI    K  I        +            Y  
Sbjct: 456 QSLKDLAFAELRDADDRPIEMTRIETLIGT-GKKQITMDQVAIEQVT---------PYAS 505

Query: 165 RDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            DV+ T  L    +P               E  L  +   +   G  +D   +++  +++
Sbjct: 506 ADVDMTARLLALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVL 565

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------------- 258
            Q  +++++ I       + +    + L   LF+   +   ++                 
Sbjct: 566 GQSLREIEQHIADFVGEPL-NINSRFDLNDLLFIRLKLPTANLKRLAGTTRSGGAVYSVN 624

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
             TL+ + +H     +A  +IL     S      ++ L E ++   GR+    +  GA  
Sbjct: 625 AETLEDLQTHDQSGIVA--MILRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQIGA-E 681

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                              +R   +A  G  L
Sbjct: 682 TGRLSSDSPNLQNIPVRS------------------------EEGREIRRAFVARPGHVL 717

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE RVLA I  +   ++ F  G+DI+  T A+ F+ P+D+VSK QR I K+  
Sbjct: 718 MTADYSQIELRVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTV 777

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y   +     +A+   L   +  Q +                     QYP   +K 
Sbjct: 778 FGIIYGISS---FGLAARTALSRTEAQQMINGLFA----------------QYP--GLKS 816

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +  T   +    +     G  + +++L        Q+GG    RR A            
Sbjct: 817 YIERTLERVKAVGYVETLFGRRRYFREL--------QDGGVTGPRRSAF----------- 857

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                                           RE T  G      +Q  + D++   M  
Sbjct: 858 -------------------------------EREATNAG------IQGTAADLIKLAMIR 880

Query: 617 ATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
             +     GY   ++L VHDE+V E P+    +V  L C  MT+ 
Sbjct: 881 LEQALIAGGYQAKMLLQVHDELVLEVPEDERDAVAQLVCDTMTQV 925


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 202/624 (32%), Gaps = 112/624 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD------------DEPVKLWDRTE 49
            +L  D ET S  P        +A+   I   +++WD            +  VKL    +
Sbjct: 297 KRLSFDTETTSTNP-------RWADLVGI---SFSWDQGEGVYIPIRSPEGDVKL----D 342

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPS 107
           +S +   L   L +  +  V  N  ++ ++  + +G+++    +  T V A         
Sbjct: 343 ESLVLEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGASF-DTMV-AHYLLEAGAR 399

Query: 108 SLKNACLALNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
           S     L+L + +H T      +  GK  I    +  +D   Y       +         
Sbjct: 400 SHGLDELSLRYLQHETVKISELIGTGKNQIR-MDQVPVDKVGYYAAEDADIPL--RLDPI 456

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
               +EA   L   L   +D E  L  +   +   G R+D++ + +L     +  + L+ 
Sbjct: 457 LSERIEAE-GLGDLL---TDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLER 512

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
           +I +L      +      L   LF    + ++  ++    T   +L            I+
Sbjct: 513 EIYQLAGRDF-NINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAKIV 571

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                +      ++ L   +     R+  +     A+ TGR S      QN+P +     
Sbjct: 572 QFRQYAKLKGTYVDALPVLICSKTDRVHTSFNQVVAA-TGRLSSNDPNLQNIPIRT---- 626

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                 S  +RS  I      KL+ AD + IE RVLA  +G+  
Sbjct: 627 --------------------QESREIRSAFIPGTPDWKLLCADYSQIELRVLAHFSGDPA 666

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++++   EDI+    ++ +  P+D+V+   R   K +   + Y     G AK       
Sbjct: 667 LMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSPFGLAKSLDIDKD 726

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------------ 489
                +  + +         +    +                                  
Sbjct: 727 EAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGRRRAIDGVRTADKRDRLKRQLT 786

Query: 490 --PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                A+   + G+A +++K A        L++ + L +      +    I    V   P
Sbjct: 787 MPERTAINTVIQGSAADIIKLAM-------LRVHRRLEKE-GSPAKLLLQIHDELVFETP 838

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYS 571
              + +  + V   + S+R L   
Sbjct: 839 PEYLEQLAQLVREEMESARNLAIP 862



 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS 649
              ++Q  + DI+   M    +          ++L +HDE+V ETP      +  L  
Sbjct: 793 INTVIQGSAADIIKLAMLRVHRRLEKEGSPAKLLLQIHDELVFETPPEYLEQLAQLVR 850


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/538 (17%), Positives = 176/538 (32%), Gaps = 93/538 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLA 115
           L  +   E ++ +  N  ++  +       DI  +  +  +++A              LA
Sbjct: 407 LKPFFEAENILKIGQNLKYDLKILANY---DIEVRGQLFDTMIAHYLLNPDMRHNMDLLA 463

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +  +     E   LI +  KG +                +L  EY   D + T +L  
Sbjct: 464 EAYLSYAPVAIE--TLIGKKGKGQLSMCSV---------PAELQKEYAVEDTDVTLQLKH 512

Query: 176 RLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             +PL +           E  L  +   +   G  +D   + +L + I  +   L   I 
Sbjct: 513 TFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAIF 572

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +        S     L   LF    +        T +   S   +++LA    +      
Sbjct: 573 EQAGESFNLS-SPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVLE 631

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             A+ KL     + L   V+   GR+  T      + TGR S      QN+P +      
Sbjct: 632 FRALQKLQSTYTDALPREVNPRTGRIHTTF-MQAVTATGRLSSNQPNLQNIPIRT----- 685

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +       L+ AD + IE R++A ++ E   
Sbjct: 686 -------------------PRGSQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETHM 726

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF +G+DI+ +T AK F  P++ V+KEQR+  K +   + Y     G ++      S 
Sbjct: 727 IEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQ 786

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  + Q      T+ +                          S +  ++      A
Sbjct: 787 SKELIDTYYQTYPKLKTYIEQQIFFAREHGYVQTLLGRRRYLPDIHSRNQVVRGAAERNA 846

Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           V   + G+A +++K A           +   + +LQ+  +L         E  +   R
Sbjct: 847 VNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELLFDVPKRELEVVTPLIR 904


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 161/478 (33%), Gaps = 80/478 (16%)

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCK 137
           K    D   + W+     A    LP SLK+  +A                  +L A    
Sbjct: 339 KEYRPDWDIEHWVDHLSRAERVYLP-SLKDLLVADSAWEGLPYARCFD---LSLGAYLLD 394

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-------LIPLSDGERDLWLL 190
               S  +D  R  H    +   +     +  T  + +R       L  + D E  L  +
Sbjct: 395 PEQRSYSWDKIRQRHQNQLETHPDNNALSIMETGRILRRELANSELLSLMQDIELPLVGV 454

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +  RG  IDL+   +  + + +E   L  +I  L      + R +  +   LF    
Sbjct: 455 LVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLAGQEF-NLRSSQQMAQVLFGDLE 513

Query: 251 IDLVDMSEGTLKSILS---------HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           +     + G + S  S         H  I ++ +   L +L S+      L  L + V  
Sbjct: 514 LPTGRKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLEKLRSTY-----LEPLPQKVDD 568

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             RL        A+ TGR S      QN+P +                        G   
Sbjct: 569 TSRLHTHFNQL-ATATGRLSSSGPNLQNIPIR------------------------GEFG 603

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R C +A  G +LV AD + IE RVLA ++ +   ++AF  GEDI+  T A   +   
Sbjct: 604 PRMRQCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIAD 663

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTF-EDWE 476
           + V  E R   K +   L Y  G +          +     +Q++   ++  S F E  E
Sbjct: 664 EHVDSEARRQAKTINFGLLYGMGPQKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIE 723

Query: 477 QAESHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            A   H ++                      Q    AV   + G+A +++K A     
Sbjct: 724 DAAKQHGYVTTWAGRRRLLPDINSRNANLAQQARRMAVNTVVQGSAADIIKMAMIEAD 781



 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 598 TENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650
              +VQ  + DI+   M            G  + L VHDE++ E P     +    L ++
Sbjct: 761 VNTVVQGSAADIIKMAMIEADGDTELADAGARLTLQVHDELLLEVPREAAETAGKRLAAI 820

Query: 651 MTKNPSWAKGLPLKAE 666
           M         +PL  +
Sbjct: 821 MASVAD--MDVPLAVD 834


>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
 gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
          Length = 1020

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 167/490 (34%), Gaps = 71/490 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--CTSVLARTNGLP--SSLKNA 112
           L   L     + +  N  F  +L  +  GI + +   +   +  L    G    +SL   
Sbjct: 494 LKPILESGGHLKIGLNIKFSAVLLAQH-GIVMQNHDDVELISYTLDAGRGSHDLASLAKR 552

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171
            L      H      G+  +A        +  Y    A+  ++ WQ+         E   
Sbjct: 553 WLGHTTLSHGELTGSGRNRLAVDQVAIDRATAYAAEYADMTLRLWQVLKPRLV--AERMN 610

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +++ L      ER +      +  RG  ID  ++ +L   +AQ   +L+ +I +L    
Sbjct: 611 AVYETL------ERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEP 664

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290
           I +      +   +F   G+     ++ T     S   + +LA+      R       + 
Sbjct: 665 I-NVGSPKQIGDIMFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHDFPRKILDWRQVS 722

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L E V+   R   T     A+ TGR S      QN+P              
Sbjct: 723 KLKSTYTDALPEYVNPQTRRVHTTYALAATTTGRLSSNEPNLQNIP-------------- 768

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA+ G +LV AD + IE R+LA IA      +AF +G
Sbjct: 769 ----------VRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDG 818

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T ++ F  P+  +  E R   K +   + Y     G A             +++
Sbjct: 819 LDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPREEAAAYIKK 878

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + D                     +   ++ +   +      A+  +L G
Sbjct: 879 YFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKAPNPSHRAFNERAAINARLQG 938

Query: 501 TACELVKKAW 510
           +A +++++A 
Sbjct: 939 SAADIIRRAM 948



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655
           Q  + DI+   M               ++L VHDE++ E PD     ++  +  +M   P
Sbjct: 937 QGSAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDEEVAATLPVVQHVMQDAP 996


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/510 (16%), Positives = 174/510 (34%), Gaps = 62/510 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I   A A +      + RT+ +   S   Q+L DE+      +     I+  K  GI + 
Sbjct: 334 ILGFAIANEHG--NFFIRTDTALSSSLFTQWLEDESKKKSVFDGK-RAIVSLKWQGIQLR 390

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
             ++    + +       S ++            +  + ++  A + KG+    P +   
Sbjct: 391 GVQF-DLLIASYLLNPSQSTEDVASI----AKTKQYTDVQSDEAIYGKGAKQKIPDEPVL 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A H+          ++D     +  ++    +D E  L  +   +   G +ID+  + ++
Sbjct: 446 AEHLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKRLKEM 505

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
            E + ++ K+++++I +L      +      L + LF    + ++  ++    T   +L 
Sbjct: 506 GEELTEQLKEIEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLE 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                    + IL+           +  L + V  D     T+     ++TGR S     
Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLSSTEPN 624

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385
            QN+P +                              +R   + S     +  AD + IE
Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFVPSEPDWVIFSADYSQIE 660

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA IA ++  I AF +  DI+  T    F+   D+V+   R   K +   + Y    
Sbjct: 661 LRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGISD 720

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAES 480
            G ++            ++++ +       +                            S
Sbjct: 721 YGLSQNLNITRKEASEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITS 780

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +  ++      A+   + G+A +++KKA 
Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAM 810


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/631 (17%), Positives = 206/631 (32%), Gaps = 126/631 (19%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D      +   L   L  +    V  N+ F+  +F       I  K  +  +++A     
Sbjct: 409 DNLNLEIVLEKLRPILASDDYPKVFQNAKFDIDVFYHQ---GITVKGLVFDTMVASYVLH 465

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P       L  N  +   +   G   ++    G                       YC  
Sbjct: 466 PE------LTHNLEDLCDRYLTGITSLSYKSLGIPAGKTIADLDIPTT------ANYCGL 513

Query: 166 DVEATRELFKRL-------IPL----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D  AT  L ++L        PL    S+ E  L ++   + + G +I+++ +    + + 
Sbjct: 514 DAYATYLLREKLQAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLE 573

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           ++   ++++  +        S     L   LF    ++     +         S + +L 
Sbjct: 574 RDLAYIEKNAYESIGETFNLS-SPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQ 632

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            D  L         + KL     + L +       R+         + TGR S      Q
Sbjct: 633 GDHPLVDYILEHRTLSKLKSTYVDALPKLAEPKTARVHTDFN-QTITSTGRLSSSNPNLQ 691

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                           S  +R   I  NG  LV AD + IE R+
Sbjct: 692 NIPIRS------------------------EFSRRIRQAFIPENGYLLVSADYSQIELRI 727

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++ E   ++A+ + +D++  T    F+    +++ E+R++GK +   + Y  GA+  
Sbjct: 728 LAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--REITPEERSLGKTINFGVIYGMGAQ-- 783

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
              A    L ++Q  + ++     + + Q   +    + Q       + ++G        
Sbjct: 784 -KFARESKLTVEQGRKFIE--KYHQRYAQVFEYLENSKKQAITQGYVETILGR------- 833

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                                           RR  N    +++R            R L
Sbjct: 834 --------------------------------RRYFNFDNPLLKR-----------LRGL 850

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY--DI 624
              D+  D   LN   +QL+R            +Q  S DI+   M    +    Y   +
Sbjct: 851 SLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARL 904

Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           +L VHDE+V E P   + S+   + + M + 
Sbjct: 905 LLQVHDELVLEVPREEWPSLESKIKTTMEEA 935


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/563 (16%), Positives = 187/563 (33%), Gaps = 89/563 (15%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D +++ +  N  ++ I+  +  GI +               G      +    L F   
Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQ 461

Query: 122 LTKMEE----GKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKR 176
               +     GK+ I         +  Y    A+   + W L       D      +++ 
Sbjct: 462 PISFKSVCGTGKSAITFNHVPIPAATRYAAEDADITFRLWALLKPRLSSDGAT--RIYE- 518

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRS 234
                + +R L  +   +   G  +D   +  L    A +  +L+E+I  L     +I S
Sbjct: 519 -----EVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYVLAGCRFLISS 573

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSA 288
            +Q   L   LF   G+     S+   +   + + + +LA +       IL     S   
Sbjct: 574 PKQ---LGEVLFGTMGLAGGKKSKSG-QYSTNVTELERLAAEGEAIASKILEWRQLSKLK 629

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L   V+   GR+  +    GA +TGR S      QN+P +              
Sbjct: 630 STYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIPIRT------------- 675

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R+  IA  G  L+ AD + IE R+ A +A E   ++AF   ED
Sbjct: 676 -----------EIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKED 724

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T  + F      V +E RA  K +  A+ Y     G A   +         + ++ 
Sbjct: 725 IHALTAKQLFGH----VDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYF 780

Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +   +   + D                         +S  +  +      A+   + G +
Sbjct: 781 ERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMS 840

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIV 561
            +++K+A        +++   L +     V+    +    +  VP   + + K  +  ++
Sbjct: 841 ADIIKRAM-------VRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVM 893

Query: 562 LPSSRRLVYSDVKGDCSYLNTAT 584
           + ++  +V   V  +       +
Sbjct: 894 MEAALPIVQLSVDLEVEIGTGTS 916



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTAT-------SQLMRERTYGGKLTEN 600
           ++ R  +R   I     R L +  + G   +     T        ++   +    +    
Sbjct: 775 MIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINA 834

Query: 601 IVQAISRDILCEGMKNAT----KNGYDIV---LTVHDEIVSETPDTPYFSVGTLCSL 650
            +Q +S DI+   M        K G   V   L VHDE++ E P+        +   
Sbjct: 835 PIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQ 891


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/566 (15%), Positives = 189/566 (33%), Gaps = 88/566 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114
           L   L D++V+ +  N  ++  + ++  GI+I               G  L     +   
Sbjct: 403 LKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAA 461

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
            ++ +      ++    G++ I+        +  Y    A+  ++ W+LF        E 
Sbjct: 462 RVHLNHVCISFKDVCGTGRSQISFAEVPLDKATEYAAEDADVTLRLWRLFKSRIAN--EG 519

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +++        +R L  +   +   G ++D + + +L          L+ +I  L  
Sbjct: 520 ATRVYEL------VDRPLVGVIAKMEHEGIKVDREALSRLSAEFTAGIAALEGEIHALAG 573

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLA 283
               +   T  L   LF   G       +         + + QL          +L+   
Sbjct: 574 QPF-AIGSTQQLGAILFDKMGYKGGRKGKSG-AYSTDVTILEQLKAQGAEIAGKVLDWRQ 631

Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S       + L   ++ D GR+  +    GA +TGR S      QN+P +         
Sbjct: 632 LSKLKSTYTDALQAQINKDSGRVHTSYSLSGA-QTGRLSSTDPNLQNIPIRT-------- 682

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G  ++ AD + IE R+ A +A      +AF
Sbjct: 683 ----------------EVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAF 726

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
           ANGEDI+  T  + F     +V+++ R   K +  A+ Y     G A   +  A      
Sbjct: 727 ANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQDM 782

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           + ++ +     S +                       + + ++     +      A+   
Sbjct: 783 ISRYYERFPGISLYITDTIEKARSRGYTETLFGRKTWFPRIKAPVQHERQGAERAAINAP 842

Query: 498 LIGTACELVKKAWRAKHQ-------GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
           + GT+ +++K+A               +++   + +     + EG    A   A + R++
Sbjct: 843 IQGTSADIIKRAMARMGPALAAEGLHRVKMLLQVHDELVFELPEGDVEHA--GAVIRRVM 900

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGD 576
               +  V + +P    + +    G 
Sbjct: 901 EGAAEPIVKLSVPLGVEIGHGSSWGA 926


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/566 (19%), Positives = 200/566 (35%), Gaps = 80/566 (14%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            + I        D P  + D    S   S   +   DE ++  + +   E ++    LGI
Sbjct: 331 HSEIYKLGIKTTDTPTYIID--PDSDFVSKFKEIFEDEEIVKNSFDIK-EDVVLLDKLGI 387

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++         +L      PS    +   L          E K+ +    KG   +  Y 
Sbjct: 388 NLKLP--YDDMMLMHYLIDPS---RSSYDLKVLSQSYLDYEVKSPVDLLGKG-KKALKYQ 441

Query: 147 CTRANHVQAWQLFGEYCKRD----VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
               + +  +   G     D    +E   + +  L    + E  L  +   +   G+  D
Sbjct: 442 DLDFDELGNYLASGINAIEDSKEILEDKLDEYHMLDLYKEIEIKLSKVLADMEIVGFVTD 501

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
             ++  L+E I ++  K+ E+I +L      +   T  L   LF    + ++  ++    
Sbjct: 502 KKVLEDLKENIDKDIDKITEEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTGFS 560

Query: 260 TLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           T   +L      H  I ++ +   L +L S+      +  L +A+  DGR+R T +   A
Sbjct: 561 TNAQVLEKLRDKHQIIPKIERYRELFKLRSTY-----IEGLEKAIDEDGRIRSTFRQNIA 615

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QNLP +                              +R    A  GK
Sbjct: 616 A-TGRLSSQDPNLQNLPIKT------------------------DEGRLIRKAFRAEEGK 650

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE R+LA ++G+   I AF  G DI+  T +K F+T +DKV+K QR+  K 
Sbjct: 651 ILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEAKA 710

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474
           +   + Y     G ++            +  +  +  S   + D                
Sbjct: 711 VNFGIIYGISDYGLSQNLNIPRKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLF 770

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD---LTE 526
                  +  S +  ++      A+   + GTA +++K A     + + +   D   + +
Sbjct: 771 KRRRYVPEINSRNFNVRSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQ 830

Query: 527 GFACVVQEGGSISARRVANVPRLVMR 552
               ++ E    S      + R  M 
Sbjct: 831 IHDEIILEADESSKDEAIKILRESME 856



 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M    KN  K G D  IVL +HDEI+ E  ++    
Sbjct: 787 RSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEADESSKDE 846

Query: 644 VGTL 647
              +
Sbjct: 847 AIKI 850


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/667 (17%), Positives = 219/667 (32%), Gaps = 127/667 (19%)

Query: 7   DIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAMPS-DLLQYL 61
           D ET S  P+    VG+           C +      V       TE   +P  ++L  L
Sbjct: 381 DTETTSLDPIEATLVGIG----------CCWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430

Query: 62  RD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           R     +       N+ F+RI+     GI +    +  T + +       S K + L   
Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLLHQ-GIQLAGVVF-DTMLASYVLRPEDSHKLSDLCHR 488

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--LFK 175
           + E++  +      I +  +   +           + A+  F    K   E  +   L+ 
Sbjct: 489 YLENIKSLNYKDLEIPK-TQTIANLDISRVAHYCGMDAYATFKLVPKLLAELEKAPDLYN 547

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            LI +   E+ L  +   + + G RID   +    + + Q+    ++   +       + 
Sbjct: 548 LLIKV---EQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYEAAGESF-NL 603

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL-----AKDLILNRLASSGSAIL 290
                L   LF    +      +        H+ + +L       D IL     +     
Sbjct: 604 GSPKQLSYILFDKLKLSKSKSRKIKTGYSTDHATLEKLQGEDRIIDYILEHRTLAKLKST 663

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L   V    GR+         + TGR S      QN+P +                
Sbjct: 664 YVDALPALVHPKTGRVHTDFN-QTVTTTGRLSSSNPNLQNIPIKT--------------- 707

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                      S  +R   I   G  LV AD + IE R+LA +  E   ++A+ N +D++
Sbjct: 708 ---------EFSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLVEAYQNYQDVH 758

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T    F+     ++ E+R+IGK +   + Y  GA+ F   A   GL +Q+  + +   
Sbjct: 759 RVTAQLLFDKA--NITSEERSIGKTINFGVIYGMGAQRF---ARAFGLSVQEGKEFI--- 810

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              E + Q  +             V + L     E + K +     G  + ++   +   
Sbjct: 811 ---EKYHQKYAR------------VFEYLERVKKEAIAKGFVTTILGRRRYFEFFDDKL- 854

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                +R  K +              ++      LN + +QL+R
Sbjct: 855 -------------------NRLRGEKPE--------------NLDLKKLELNFSDAQLLR 881

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645
                       +Q  S DI+   M    +        ++L VHDE+V E P   +  + 
Sbjct: 882 AAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVFEVPPHEWEELE 935

Query: 646 -TLCSLM 651
             + + M
Sbjct: 936 VKIKNTM 942


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           + D E +   D  E S + S       +  +    +N   + I  K     +I  +    
Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395

Query: 96  TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
              ++         +S   + +A+ +     K +E            + S  Y+      
Sbjct: 396 DITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206
           +  +        ++     E  + L+ +S        E  L  +   +   G ++D  ++
Sbjct: 450 LAEYMGQIICTVKETVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L     +    L+++I +L+     +      L + LF    + ++  ++       +
Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320
              + +L     +    +    I+KLN+     L   ++ +  R+  +      + TGR 
Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   IA +  KLV AD
Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   + 
Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A             ++ +         F D                      
Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
            + +S +   +++   FA+   + G+A +++K A    H+           +LQ+  +L
Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%)

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
              Q   + +   S  E+  +A  HH  +  +         +     EL   A +A + G
Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           ++    D        +       A+           + K  +   +  +    Y+    +
Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774

Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628
                             GK    N  +Q  + DI+   M N  K          ++L V
Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834

Query: 629 HDEIVSETPDTPYFSVGTLCS 649
           HDE++ E  D     V  +  
Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/560 (16%), Positives = 182/560 (32%), Gaps = 89/560 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113
              +  L++E      +++   ++LF +   +DI  K    C   LA    L  +LK   
Sbjct: 353 ESFINALQNEDTKKYVYDAKETKVLFSR---LDIDIKGIEHCVM-LASYL-LDPALKIID 407

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +A +         E   +I  F KG+    P         +   LF       V A  E+
Sbjct: 408 VAQSAQMQGIYYVESDEMI--FGKGAKMHIP---------ERTNLFKHIASE-VNAIHEV 455

Query: 174 ----------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                      K+L  L+  E  L L+   +  +G +++   + ++Q+ I     +L   
Sbjct: 456 SALQIRKLNELKQLELLTALELPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITR 515

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA------KDL 277
           I +       +      L + LF    +D     +       +   +  LA      +D+
Sbjct: 516 IHEHAGSTF-NINSPKQLGVVLFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDI 574

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +L R   S      +  L + +  D ++        A +TGR S      QN+P      
Sbjct: 575 LLYR-TLSKLQSTYVEGLQKLIGDDDKIHTRFNQVIA-QTGRLSSIDPNLQNIP------ 626

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396
                                     +R   + S    ++  AD + IE RVLA I G+ 
Sbjct: 627 ------------------VRLDEGRKIRKAFVPSEPNSVIFAADYSQIELRVLAHITGDK 668

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             ++AF  G DI+  T  K FN   ++V+ + R   K +   + Y     G ++      
Sbjct: 669 GMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVYGISDYGLSQSLGITR 728

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 +  + ++      +                            S +  ++     
Sbjct: 729 KDAQAFIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIPDITSRNFNLRGFAER 788

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + G+A +++K A    ++ V +   D        V +       +       + 
Sbjct: 789 TAMNTPIQGSAADIIKLAMVHYNEQVKET--DFKAKLLLQVHDELIFEVPKDELEAFSLF 846

Query: 552 RRHKRDVHIVLPSSRRLVYS 571
            +H  +  + L     + Y 
Sbjct: 847 VKHVMENALELKVPLEVEYD 866


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 131/368 (35%), Gaps = 58/368 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L      + D G R++  L+ +  + +     +L++ I + T     +      L
Sbjct: 452 EIEMPLTYSLYRMEDAGIRVERKLLKEYGDRLKVRIAELEQKIYEETGETF-NINSPKQL 510

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296
              LF    I     ++       +   + +LA D    RL      + KLN+     L+
Sbjct: 511 GEVLFDHMKIPGGKKTKTG--YSTAADVLEKLASDWPAVRLILDYRQLTKLNSTYADGLA 568

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  D R+ GT      + TGR S      QN+P                         
Sbjct: 569 AYIGPDERIHGTFN-QTITATGRISSTEPNLQNIP------------------------V 603

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +   G   + AD + IE RVLA ++G+   I A+   EDI+  T ++ 
Sbjct: 604 RMELGREIRKVFVPQEGCVFIDADYSQIELRVLAHMSGDQRLIGAYKQAEDIHAITASQV 663

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P+ +V+  QR   K +   + Y     G ++            ++++ +      TF
Sbjct: 664 FHVPLHEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSITRKEASEYIEKYFETYPGVKTF 723

Query: 473 EDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAWR 511
            D   AE+  L                    +MQ  +    A+   + GTA +++K A  
Sbjct: 724 LDGLVAEAKELGYAASMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMI 783

Query: 512 AKHQGVLQ 519
                + +
Sbjct: 784 RVDGALRK 791


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 135/394 (34%), Gaps = 66/394 (16%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +  ++   G  +D   +    E ++ +  +L + I +L  G   +      L 
Sbjct: 533 IEMPLVRVLASMERAGMYVDPARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQLS 592

Query: 243 MYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296
             LF   G+    + +        +   +  LAKD  + RL        K     L+TL 
Sbjct: 593 RVLFDKLGLPTAGLKKTQRGYYSTNAKVLEDLAKDYEIVRLILEYRERTKIKSTYLDTLG 652

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
               +DGR+  T      + TGR S      QN+P +                       
Sbjct: 653 ALRETDGRVHTTYN-QTITATGRLSSSNPNLQNIPTRS---------------------- 689

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  V+       G   V  D + IE R+LA ++G++  + AF  GED +  T A+ 
Sbjct: 690 --ELGHAVKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAETAARV 747

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P+++V+ + R+  K +   + Y     G ++      +     +  + +      T+
Sbjct: 748 FGVPVEEVTPQLRSRAKAVNFGIVYGQQAYGLSQALDIPMAEAREMIDAYFRAYPGVRTY 807

Query: 473 EDWEQAESHHLWMQDQ-------------------YPEFAVKDKLIGTACELVKKAWRA- 512
            D   A +      +                        A+   + G+A +++K A    
Sbjct: 808 LDETVAFAKQTGYAETMYGRRRPIPELRVPAQRMFGERTAMNHPMQGSAADIIKIAMVRV 867

Query: 513 ---------KHQGVLQLWKDLTEGFACVVQEGGS 537
                      + +LQ+  +L   F C V E  +
Sbjct: 868 AERLRTEGFAAKMILQVHDELD--FECPVGEVDA 899


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 108/625 (17%), Positives = 201/625 (32%), Gaps = 126/625 (20%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           ++  +   L   L       V  N+ F+R++FK      I     +  ++LA     P  
Sbjct: 426 KKEQVLDSLRTILESSDYPKVFQNTKFDRLIFKHQ---AINLDGVVFDTMLASYVLHPE- 481

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                 +   SE   +  EG       C+   +           +   ++  EYC  D  
Sbjct: 482 -----KSHKLSELCEQYLEGIT-----CQNYDELGISKKQTIADLDIEKV-AEYCGMDAY 530

Query: 169 ATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L      +P     L + E+ L  +   + D G  ID + + KL + + QE 
Sbjct: 531 GTFLLVEPLKNELQQVPTLEQLLLEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQEL 590

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L++      +    +      L   LF    ++     +        H+ + +L  D 
Sbjct: 591 SSLEKKAYDAAEEKF-NLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDH 649

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +         + KL     + L E V+    R+         + TGR S      QN+P
Sbjct: 650 PIIDYILEYRTLSKLKSTYIDALPELVNKKTKRIHTNFN-QSVTATGRLSSSNPNLQNIP 708

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                           S  +R   I      LV AD + IE R+LA 
Sbjct: 709 IRT------------------------EFSRQIRQAFIPQKDWLLVSADYSQIELRILAH 744

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ E   + A+ N ED++  T    F    ++++ ++R +GK +   + Y  G++     
Sbjct: 745 LSQESVLLNAYQNAEDVHTVTAKLLFEK--EEITPQERNLGKTINFGVIYGMGSQR---F 799

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           A   G+   +  + +      + + +   +   M+ +         ++G           
Sbjct: 800 AREAGVSATEGKEFI--NKYRQRYAKVFEYLENMKKEAIANGYVTTILGR---------- 847

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                                        R        + R    D   +  +   + Y+
Sbjct: 848 ----------------------------RRYFNFFDDNLYRFRGHDPQTIDLNKLNINYN 879

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNGY---DIVLT 627
           D            SQL+R            +Q  S DI+   M        Y   +++L 
Sbjct: 880 D------------SQLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQ 921

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLM 651
           VHDE+V E P+  +  +   +   M
Sbjct: 922 VHDELVFEIPEKEWEELNHKIKETM 946


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 171/520 (32%), Gaps = 79/520 (15%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVL--ARTNGLP 106
           ++ + ++L +  ++E +  + HN   F   L K  + ++      +    L  +  NG P
Sbjct: 369 ENLIATELKELWQNENIHKIGHNIKEFITWLLKHDVELNGLYFDTMIAEYLIDSIRNGYP 428

Query: 107 -SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCK 164
            +SL +  L  +       + +GK               Y       +   W +  +  +
Sbjct: 429 IASLSHKYLNRSVPSLDELLGKGKGAKKYSEIPPERLKDYSAYNVKAIFDIWPMQKKVLQ 488

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            + +            +D E  L  +  ++   G+++D   + +  E++    K L++ I
Sbjct: 489 ENRQEEL--------FNDIELPLITVLASMEYHGFKVDAAKLHEYGEVLLSRIKDLEKVI 540

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
             L      +   T  L   LF    + +V  ++    T   +L            I+  
Sbjct: 541 YMLAGEEF-NINSTKQLGTILFEKLKLPVVKSTKTGYSTDVEVLEELYYKHDIIPCIIEY 599

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +         L + ++   G++  +      + TGR S      QN+P +       
Sbjct: 600 RQLTKLYTTYAEGLEKVINPVTGKIHSSFN-QTVTATGRISSTEPNLQNIPVRH------ 652

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   I S      V AD + IE RVLA I G++  I
Sbjct: 653 ------------------EMGREIRKAFIPSSENAVFVDADYSQIELRVLAHITGDEALI 694

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF  GEDI+  T +  F+   + V+ E R   K +   + Y     G A+         
Sbjct: 695 NAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVYGISDYGLARDLGITRKEA 754

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  +        T+ D                       +  S +   +      A+
Sbjct: 755 KRYIDDYFAKYPKVKTYVDEIVRVGQEQGYVETLFHRRRYLPELASKNFHQRSFGKRVAM 814

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
              + GTA +++K A             K + +LQ+  +L
Sbjct: 815 NTPIQGTAADIIKIAMVKVYKALKESGLKSRLILQVHDEL 854



 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           V       V +             +    YL    S+   +R++G ++  N  +Q  + D
Sbjct: 768 VKTYVDEIVRVGQEQGYVETLFHRR---RYLPELASKNFHQRSFGKRVAMNTPIQGTAAD 824

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
           I+   M    K          ++L VHDE+V ET +    +V  L    M +   
Sbjct: 825 IIKIAMVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE 879


>gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c]
 gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 108/254 (42%), Positives = 146/254 (57%), Gaps = 5/254 (1%)

Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           W  F EY +RDV A R++ KRL     +  E  LW LDQTINDRG  ID DLV      +
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            + ++ L +    LT G ++++ Q  AL  +L    G+ L DM + T+   +    + + 
Sbjct: 63  ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPET 122

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLPR 
Sbjct: 123 VRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182

Query: 334 ERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             S+E++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RVLA
Sbjct: 183 TLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVLA 242

Query: 391 WIAGEDWKIKAFAN 404
           W+AGE  K+ AF  
Sbjct: 243 WLAGETPKLHAFRE 256


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/595 (17%), Positives = 186/595 (31%), Gaps = 115/595 (19%)

Query: 4   LFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP----S 55
           + ID ET S       L  + +    EQA      +A  D             MP     
Sbjct: 318 IAIDTETTSEHAVEADLVGISIAI-GEQAWYVPIDHAHTD---------THRNMPTADVQ 367

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLKNACL 114
            L+  L    ++ V  N  ++ I+ ++    D+   +     +++A        L     
Sbjct: 368 KLITALDRSDLLLVGQNIKYDLIVLQRH---DMALPQPRLFDTMIASYL-----LDANRR 419

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +    +   +      +IA        S   D       +       Y   D   T  L+
Sbjct: 420 SHGLDQLAVEFL-SHEMIAFKDVVPKGSTFRDVDIPTAAR-------YAGEDAAITLALY 471

Query: 175 KRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
               P  +          E  L  +   +   G  +D +++  L E   +   +L+E I 
Sbjct: 472 NLFAPRIEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEKIY 531

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L      +      L   LF   GI  V  ++         S +  LA    +  + + 
Sbjct: 532 ELAGEAF-NINSPKQLATLLFEKMGIPPVKKTK--TGYSTDVSVLEALAPQYEIANVLTQ 588

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL     N LSE ++   GR+  +     A+ TGR S      QN+P +      
Sbjct: 589 YRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVAN-TGRLSSSDPNLQNIPIRT----- 642

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR   + + G   V AD + IE R+ A ++G++  +
Sbjct: 643 -------------------EEGREVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESML 683

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
           K+FA  +DI+  T    F +         R + K +   + Y   A    +         
Sbjct: 684 KSFAEEKDIHAQTADAIFGSSE----PNYRRMAKAVNFGILYGISAFKLSRDLGMTPKEG 739

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAV 494
              +  +         + D + A +                      +  +++     AV
Sbjct: 740 QALIDSYFLRYPGVKAYIDHQIAFAREHGYAQTLYGRRRYLPDINSRNRNIREAAERNAV 799

Query: 495 KDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISAR 541
              + GT+ +++K A    HQ         +LQ+  +L         E  S   +
Sbjct: 800 NMPIQGTSADIIKIAMNRIHQQLAPYQARMLLQIHDELLFEVPFEQAEPFSAFLQ 854


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/509 (16%), Positives = 166/509 (32%), Gaps = 85/509 (16%)

Query: 36  AWDDEPVKLWDRTEQSAMPS-DLLQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           A  ++ + L    +    P+  +LQ L  +  +    H++     +     GI++ S  +
Sbjct: 355 AVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAKSALWMLHHH-GIELKSLAF 413

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             T V A     P++     + L        +              ++       +A+ +
Sbjct: 414 -DTMV-AAYLLNPTASGYDLIDLALEHLGIVL-------------PVNGEVSLAAKADAI 458

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
               L GE  K+       L +      + E  L  +   +   G  +D   + ++   +
Sbjct: 459 LK--LAGELVKK-----LHLQEEDRLYFEVELPLVQVLADMEMAGVTVDKQGLKEMSAEL 511

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
               + L   I  L      +      L   LF    + +   ++           + +L
Sbjct: 512 HDMIESLAHRIHTLAGEDF-NINSPKQLGHILFEKLKLPVYKKTK--TGYSTDAEVLEKL 568

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
           A++  +  L      + KL     + L+  V    GRL  T      + TGR S      
Sbjct: 569 AEEHEIVALILEYRQLAKLKSTYTDGLAALVDPQTGRLHSTF-HQTVTATGRLSSAEPNL 627

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386
           QN+P +  S                           +R   +    G  ++ AD + IE 
Sbjct: 628 QNIPIRLES------------------------GRRIRKVFVPRQKGNLILTADYSQIEL 663

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           RVLA ++ +   ++AF  G+DI+  T A+ F  P+++V+ + R+  K +   + Y     
Sbjct: 664 RVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFGIVYGISDF 723

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------- 489
           G A+  K         +  +         + D    E+ H                    
Sbjct: 724 GLARDLKVSRREAKSYIDNYFARCPGVKDYIDRVIKEAKHTGYVTTLLNRRRYLPDLFSP 783

Query: 490 --------PEFAVKDKLIGTACELVKKAW 510
                      A+   + G+A +++K A 
Sbjct: 784 NYNARSFGERAAMNTPIQGSAADIIKLAM 812



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
           R++G +   N  +Q  + DI+   M    +          +VL VHDE++ + P++    
Sbjct: 788 RSFGERAAMNTPIQGSAADIIKLAMVRVARELRERNLQAKLVLQVHDELIFDVPESEVNE 847

Query: 644 VGTLC-SLMTKNPSWAKGLPLK 664
           +  L    M         LPL 
Sbjct: 848 LVDLVRDCMENA------LPLD 863


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/530 (16%), Positives = 173/530 (32%), Gaps = 88/530 (16%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D +++ +  N  ++ I+  +  GI +               G      +    L F   
Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQ 461

Query: 122 LTKMEE----GKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKR 176
               +     GK+ I         +  Y    A+   + W L       D      +++ 
Sbjct: 462 PISFKSVCGTGKSAITFNHVPIPAATRYAAEDADITFRLWALLKPRLSSDGAT--RIYE- 518

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRS 234
                + +R L  +   +   G  +D   +  L    A +  +L+E+I  L     +I S
Sbjct: 519 -----EVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYALAGCRFLISS 573

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSA 288
            +Q   L   LF   G+     S+   +   + + + +LA +       IL     S   
Sbjct: 574 PKQ---LGEVLFGTMGLAGGKKSKSG-QYSTNVTELERLAAEGEVIASKILEWRQLSKLK 629

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L   ++   GR+  +    GA +TGR S      QN+P +              
Sbjct: 630 STYSDALIGKINPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIPIRT------------- 675

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R+  IA  G  L+ AD + IE R+ A +A E   ++AF   ED
Sbjct: 676 -----------EIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKED 724

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T  + F      V +E RA  K +  A+ Y     G A   +         + ++ 
Sbjct: 725 IHALTAKQLFGH----VDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYF 780

Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +   +   + D                         +S  +  +      A+   + G +
Sbjct: 781 ERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMS 840

Query: 503 CELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEGGSISARRVAN 545
            +++K+A       +       +++   + +     V E     A+ V  
Sbjct: 841 ADIIKRAMVRMEPALAKVGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIR 890



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 15/117 (12%)

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTAT-------SQLMRERTYGGKLTEN 600
           ++ R  +R   I     R L +  + G   +     T        ++   +    +    
Sbjct: 775 MIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINA 834

Query: 601 IVQAISRDILCEGMKNATKNGYDI-------VLTVHDEIVSETPDTPYFSVGTLCSL 650
            +Q +S DI+   M         +       +L VHDE++ E P+        +   
Sbjct: 835 PIQGMSADIIKRAMVRMEPALAKVGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQ 891


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 106/620 (17%), Positives = 200/620 (32%), Gaps = 115/620 (18%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           +Q  +   L   L  +    V  N  F+R++  +T GI +     + T + +      +S
Sbjct: 439 DQQTVLEALRPILERDRYPKVLQNVKFDRLVL-RTQGIKLAGV-VMDTMLASYVLNPDNS 496

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRD 166
                L   +   +  ++  K L     K   +           +Q +  F      +  
Sbjct: 497 HNLNSLTERYFPQIQ-LKSYKDLKIPKGKTIAELSSKTVANYCGMQVYATFKLVPKLREK 555

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +EA   + K L    + E+ L  +   +  +G RID   + +L E + ++   ++++  K
Sbjct: 556 LEAIPAIEKLL---LEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYK 612

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF    +D     +        H+ + +L  D  +       
Sbjct: 613 QAGEEF-NLGSPKQLSELLFEKLNLDRRKSRKMKTGYSTDHATLEKLQGDHPVIDTILEH 671

Query: 287 SAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + V  D  R+         + TGR S      QN+P +       
Sbjct: 672 RTLSKLKSTYVDALPKLVHKDTQRIHTDFN-QTITSTGRLSSSNPNLQNIPIRT------ 724

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +  +G  LV AD + IE R+LA ++ E   ++
Sbjct: 725 ------------------AFSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLVE 766

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCG 456
            + N +DI+  T    F    + V+ E+R +GK +   + Y  G + F       A+   
Sbjct: 767 TYRNNQDIHAVTAKLLFEK--ETVTPEERRLGKTINFGVIYGMGPQRFAREAGVSAAEGK 824

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
             + +  Q                           F   +++ G   + + K +     G
Sbjct: 825 EFIDRLKQRYPKV----------------------FGYLEQMKG---DAIAKGYVETILG 859

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                                   RR        +R  K        + + +   + KG 
Sbjct: 860 R-----------------------RRYFEFNSNRLRDAKG------KNPQEIDLDEFKG- 889

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEI 632
              +    S L+R            +Q  S DI+   M    +        ++L VHDE+
Sbjct: 890 ---IGQYDSGLLRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQVHDEL 940

Query: 633 VSETPDTPYFSVG-TLCSLM 651
           V E P   +  +   +   M
Sbjct: 941 VFEVPPDEWEELQPKIRETM 960


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 101/551 (18%), Positives = 179/551 (32%), Gaps = 97/551 (17%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           YA  D  V L +        ++LL+ L +  V     NS                     
Sbjct: 345 YAVQDTTVYLLE-------DAELLRLLDNADVTLDVFNSA-------------------- 377

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
              + A+         +       + +L      K  I+        +  + CT  ++  
Sbjct: 378 --PLYAKAMAAGGWGSSIVWDGKLAAYLLDASASKYQISELIPAYKAAAAFTCT--DYPD 433

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           A +L   + +   E T      L   ++ E  L  +   +   G  +D D + +    + 
Sbjct: 434 AGRLADLFARMKAEITACGEDALY--NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLR 491

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271
           +E +++   I   T     +      L   LF   G+     ++    T    L      
Sbjct: 492 EELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREY 551

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L +D++  R A        +  L + +  DGR+  T     A RTGR S      QN+P
Sbjct: 552 PLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP 609

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R+  +A  G  LV AD + IE R+LA 
Sbjct: 610 IRT------------------------ELGSQLRAYFVAKPGCVLVDADYSQIELRILAH 645

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KV 447
           I G++   +AF NGEDI+ +T AK +  P  +V+   R+  K +   + Y  GA    K 
Sbjct: 646 ITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKD 705

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486
                      L+ +     + S + D   A++                      +  ++
Sbjct: 706 IGVTVKEADAFLKNYLAAFPNVSGYMDKTIADAKANGYVSTLFGRRRTLPELASTNFNVR 765

Query: 487 DQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGG 536
                 A    + GTA +++K A           +   + +L +  +L      V  E  
Sbjct: 766 ASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHDELIVEAPEVEAEQA 825

Query: 537 SISARRVANVP 547
           +   R      
Sbjct: 826 ARILREEMEGC 836


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/548 (17%), Positives = 172/548 (31%), Gaps = 94/548 (17%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNG 104
           +  ++  + S L +YL    +  V  N  ++  + ++     I  K     T V A    
Sbjct: 420 ELVDREQVRSLLEEYLGSGRLSLVGQNIKYDYKVLRQW---GIMPKNIYFDTMVAAWLLD 476

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             S      LA  + ++ T                 D  P D   ++      +F  Y  
Sbjct: 477 STSVFNMDYLAEKYLDYKT-------------VHYTDIVPKDKLLSDIPLEQAVF--YGA 521

Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T  L+K    L           + E  L ++   +   G  ++  L+  L     
Sbjct: 522 EDADVTFRLYKLFSELLGARNLRSLLDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFE 581

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
                +   I  +      +      L+  LF+   I     +        S   +  L 
Sbjct: 582 GRIDAIRNQIFAICGHAF-NLNSPQQLQEVLFVERNIPTGAKTRSGF--STSTDVLEPLR 638

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            D     L      + KL     + L   ++    R+  +    G + TGR S      Q
Sbjct: 639 DDYPEVELILQYRTLNKLKTTYIDKLPLQINEKTHRIHPSFAQTG-TETGRLSCKDPNLQ 697

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +RS  +   G   + AD + IE  V
Sbjct: 698 NIPVRT------------------------EEGRRIRSAFVPQAGHVFLSADYSQIELVV 733

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA +A +     AFA G D++ +T +  F+ P+D+V+  QR I K +   + Y  G    
Sbjct: 734 LAHMADDPGLKGAFAAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTINFGVMYGMGTHSL 793

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485
           A   K   S     + Q+ +   S  +F +  +  S  +                     
Sbjct: 794 AMDLKIPHSEAKQFIDQYFERYSSVRSFVEATKTMSQQVGSVSTLLGHVRTITEINSRSA 853

Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ------LWKDLTEGFACVVQEGGS 537
             + +    AV   + G+A ++VK A       + Q      L   + +     V E   
Sbjct: 854 VERAKAERIAVNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEI 913

Query: 538 ISARRVAN 545
              + V  
Sbjct: 914 EETKAVVK 921



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 598 TENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              ++Q  + DI+   M          K G  ++L +HDE++ E P+        +  
Sbjct: 864 VNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEIEETKAVVK 921


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/571 (16%), Positives = 175/571 (30%), Gaps = 105/571 (18%)

Query: 4   LFIDIETRSP----QPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55
           L ID ET S       L  +   W   E A I          PV+  D      +  +  
Sbjct: 449 LAIDTETTSTHARGCDLVGISIAWQPGEAAYI----------PVRAPDGDPAINELIVIE 498

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L    +  V HN  F+ I+  ++ G+ +        +++A        L +    
Sbjct: 499 ILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQL--GGITMDTMVADYL-----LNSGGRN 550

Query: 116 LNFSEHLTKMEEGKAL-IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               +   +  +   L I             D    + V  +         DV+    L 
Sbjct: 551 HGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPY------ACEDVDVPIRLA 604

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L              + E  L  +   +   G  ++ D + K+ E   ++   L   +
Sbjct: 605 PTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALV 664

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
                    +      L + LF   G+ ++  ++    T   +LS   +     + +L  
Sbjct: 665 FSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQY 723

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             ++      ++ L + +    GR+  + +    + TGR S      QN+P +       
Sbjct: 724 RQATKLKNTYIDALPQLICDKTGRVHTSFR-QDVAATGRLSSSEPNLQNIPIRT------ 776

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R+   A   G  L+ AD + IE RVLA  +G++  I
Sbjct: 777 ------------------EQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALI 818

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            A+ +  DI+    A+       +V+ + R I K +   + Y     G AK         
Sbjct: 819 GAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEA 878

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------------- 489
              ++ + Q       F     A   +                                 
Sbjct: 879 RDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTE 938

Query: 490 -PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               A+   + GTA +L+K A    H+ + Q
Sbjct: 939 PERIAINMPIQGTAADLIKLAMLRVHEQLKQ 969



 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 589  RERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641
            R  T   ++  N+ +Q  + D++   M    +          ++L +HDE++ E+PD   
Sbjct: 934  RSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEEL 993

Query: 642  FSV-GTLCSLMTKNPSWAKGLPLKAE 666
             ++  T+   MT        +PLK +
Sbjct: 994  DALSDTIREAMTSVME--LDVPLKVD 1017


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 141/422 (33%), Gaps = 81/422 (19%)

Query: 157 QLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDL 205
           Q   +Y   D + T  L   L P             + E  L  + + I   G +ID + 
Sbjct: 24  QEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEE 83

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           + K    +++      +  + L      +      L++ LF    + +V  +     S  
Sbjct: 84  LYKQSADLSRRMVIAQQKAMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTN 142

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGR 319
             + +  +     L R+     ++ KL       L E +    GR+       GA+ TGR
Sbjct: 143 EEA-LEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGR 200

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P +                              +R   +A +G+KL+  
Sbjct: 201 LSSSDPNLQNIPIRTDD------------------------GRRIRRAFVAPSGRKLIAC 236

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G+   + AF +G D++    A+ F   ID+V+  +R   K +   L
Sbjct: 237 DYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGL 296

Query: 440 GYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------- 488
            Y       A+            +  +         F +  + ++      +        
Sbjct: 297 IYGMSAFGLARQLGISRGEAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLY 356

Query: 489 --------------YPEFAVKDKLIGTACELVKKAW------------RAKHQGVLQLWK 522
                             A+   + GTA +++K+A             R +   +LQ+  
Sbjct: 357 LNSIASGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHD 416

Query: 523 DL 524
           +L
Sbjct: 417 EL 418



 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551
           A+  ++ G   + V    R   + +          F    Q G S   A+    +     
Sbjct: 268 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 327

Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              +  +      +R   Y + V G   YLN+  S    +R    +   N  +Q  + DI
Sbjct: 328 SGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 387

Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +   M          G+     ++L VHDE+V E  +    + V  + + M   
Sbjct: 388 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 441


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/516 (15%), Positives = 174/516 (33%), Gaps = 62/516 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I   A A +      + RT+ +   S    +L DE+      +     I+  K  G+ + 
Sbjct: 334 ILGFAIANEHG--NFFIRTDTALSSSLFTTWLEDESKKKSVFDGK-RAIVSLKWQGVHLR 390

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                   ++A     PS  ++     + ++    +           KG+    P +   
Sbjct: 391 --GIQFDLLIASYLLNPS--QSTEDVASIAKTKQYVGVQSDEAVY-GKGAKQKVPDEQVL 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A H+          ++      +  ++    +D E  L  +   +   G ++D++ + ++
Sbjct: 446 AEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEM 505

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
            E +A++ K+++++I +L      +      L + LF    + ++  ++    T   +L 
Sbjct: 506 GEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLE 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                    + IL+           +  L + V  D     T+     ++TGR S     
Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPN 624

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385
            QN+P +                              +R   I S     +  AD + IE
Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFIPSEPDWVIFSADYSQIE 660

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA IA ++  I AF +G DI+  T    F+   ++V+   R   K +   + Y    
Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISD 720

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAES 480
            G ++            ++++ +       +                            S
Sbjct: 721 YGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITS 780

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +  ++      A+   + G+A +++KKA     + 
Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKR 816


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 156/461 (33%), Gaps = 67/461 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCA--- 416

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                       A+   L          +       T+ +    +        I+     
Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469

Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191
              A  +     A +  G Y   + + T  L +               L+D E  L  + 
Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+
Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588

Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304
            ++  +  T ++  + + + +LA+ D  L ++     ++ KL +     L E ++   GR
Sbjct: 589 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P +                              +
Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V
Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           + + R   K +   L Y   A     +A   G+D +Q    
Sbjct: 743 TTDMRRSAKAINFGLIYGMSA---FGLAKQIGVDRKQSQAY 780


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 98/596 (16%), Positives = 185/596 (31%), Gaps = 106/596 (17%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--SAMPS 55
             + +D ET +       L  + +   A +A      +  D       D   +    +P 
Sbjct: 356 RIIAVDTETSALDAMRADLVGISLATGANEACYIPLGHLNDGGGGS--DMFSEKPEQVPL 413

Query: 56  D-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           D     L   L  + V+ +  N  ++  +  +  GI +       T +L+       S  
Sbjct: 414 DDAVAALKPLLESDAVLKIGQNIKYDLNVLARY-GIAVAPID--DTMILSFDLDAGRSEG 470

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                         +          C       P+               EY   D + T
Sbjct: 471 GVGGHGMDELSERHLGHTPLSFKEVCGTGRKQIPF------GEVPLDKATEYAAEDADVT 524

Query: 171 RELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L + L P    E          R L  +   +   G ++D   + KL E  A E  KL
Sbjct: 525 WRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLSEEFATETAKL 584

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQ 272
           ++ I +L             L   LF   G               +  L+ +    +  +
Sbjct: 585 EKTIHELAGKEFT-VGSPKQLGEVLFDDLGHKGGKKGKSGQYSTDQSVLERLSG--DGAE 641

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +A  ++  R   +       + L +A++ D GR+  +    GA +TGR S      QN+P
Sbjct: 642 IADKVLEWRQ-LTKLKSTYTDALQQAINPDTGRVHTSYSLVGA-QTGRLSSTDPNLQNIP 699

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   +  NG  L+ AD + IE R+ A 
Sbjct: 700 IRT------------------------PIGRQIREAFVPENGNVLLAADYSQIELRLAAH 735

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           +A      +AFA GEDI+  T  + +     +  ++ RA  K +  A+ Y     G A  
Sbjct: 736 MADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINFAILYGISRWGLAGR 791

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
            K         +  + +      ++                       + +  S +   +
Sbjct: 792 LKIEPDEAQELIDTYFKRFPGIQSYIHETLETVRERGYSETLFGRKTWFPRIGSKNQAER 851

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEG 535
                 A+   + GT+ +++K+A       +       +++   + +     + EG
Sbjct: 852 QGSERAAINAPIQGTSADIIKRAMARMMPALEDAGLEHVRMLLQVHDELVFELPEG 907


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 96/550 (17%), Positives = 185/550 (33%), Gaps = 110/550 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            KL+++ ET               E   +   A  +D    K++  T++       ++++
Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFDG---KVYISTDEEL----FVKFI 356

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK----NACLALN 117
            D  +     N      L+      +I  +  +    LA     PSS      N C +  
Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEPSSKDYSDKNLCASYE 413

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +  +   E+ +   A  C   +     D  +A+  +                       
Sbjct: 414 IALPVCTDEQNEKYEAFACYAELCEKLGDKIKAHGQEKL--------------------- 452

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             LS+ E  L  +   + + G  +D   +    E+++ + K+L+  I +       +   
Sbjct: 453 --LSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYESAGCEF-NINS 509

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT--- 294
              L + LF   G+     ++    +      +  L  +  +  +      + KLN+   
Sbjct: 510 PKQLGVVLFENLGLPCKKKTKSGYSTNAE--VLESLRYEHPVVEMVLRYRTLSKLNSTYC 567

Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + ++ DGR+         +RTGR S      QN+P +                   
Sbjct: 568 EGLLKVIADDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRT------------------ 608

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R    A +G  LV AD + IE RVLA I+G+   IKAF + EDI+  T
Sbjct: 609 ------ELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAIT 662

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468
            ++ FN P+D V+   R+  K +   + Y  G    AK            ++ +  +   
Sbjct: 663 ASQVFNMPLDMVTPIMRSRAKAVNFGIVYGIGAFSLAKDIGVSNKEAKHYIESYLAHYSG 722

Query: 469 TSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             ++                      +  +  S    ++      A    + GTA +++K
Sbjct: 723 VDSYMKNVVEKANADGYVETMFGRRRNLPELTSSKHMIRAFGERVARNMPIQGTAADIIK 782

Query: 508 KAWRAKHQGV 517
            A     + +
Sbjct: 783 IAMIKVDERM 792



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R +G ++  N+ +Q  + DI+   M    +          +VL VHDE++ E P     
Sbjct: 760 IRAFGERVARNMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQDESM 819

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 820 RVALIVQ 826


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 92/564 (16%), Positives = 184/564 (32%), Gaps = 97/564 (17%)

Query: 1   MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +  +  D ET    PL           A +   A++W+          ++     +++
Sbjct: 373 MKQPSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIAFPKEKEAAQEII 422

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113
           + LR       +  +  N  ++  + +K    DI  K  +  ++LA              
Sbjct: 423 ELLRPFFEATEIEKIGQNLKYDLKVLRKY---DIVVKGQLFDTMLAHYLINPDMRHNMDI 479

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           LA  +  +         LI +  KG       D   A+  +       Y   D + T +L
Sbjct: 480 LAETYLNYTP--VSITELIGK--KGKNQKSMRDVPVADQTE-------YAVEDADITLQL 528

Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            +               +D E  L  +   +   G  +D   +  L + +  +   L+++
Sbjct: 529 KEHFSKELGEANTQKLFTDIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKN 588

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I          +     L   LF    +        T +   +   ++ LAKD  +    
Sbjct: 589 IYAEAGEEFNIA-SPKQLGEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADV 647

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L   V    +   T      + TGR S      QN+P +     
Sbjct: 648 LEYRGLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNPNLQNIPIRTER-- 705

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    VR   +       L+ AD + IE R++A ++ E+ 
Sbjct: 706 ----------------------GRQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEET 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF NGEDI+ +T +K F+ P+++V++EQR+  K +   + Y     G +        
Sbjct: 744 MMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRG 803

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492
                +  + +       +   +   +                      +  ++      
Sbjct: 804 EAKELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGRRRYLNAINGSNAIVRGAAERN 863

Query: 493 AVKDKLIGTACELVKKAWRAKHQG 516
           AV   + G+A +++K A    ++ 
Sbjct: 864 AVNAPIQGSAADIIKIAMINIYRK 887


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 127/370 (34%), Gaps = 54/370 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L      + +RG +++ + + +  E +    K  +E+I K+      +      L
Sbjct: 563 EIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMAGEEF-NINSPKQL 621

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF    +     ++    T   +L    +     + +LN    +       + L   
Sbjct: 622 GVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQVAKLKSTYTDGLEGY 681

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V  DGR+   L     + TGR S      QN+P +                         
Sbjct: 682 VKEDGRIHCKLNQL-VTATGRLSSTEPNLQNIPIR------------------------M 716

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G   V AD + IE R++A ++G++  IKA+   EDI+  T +  F 
Sbjct: 717 ELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRITASHVFG 776

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            P+D+V+  QR   K +   + Y     G  +            +  + +       + D
Sbjct: 777 VPLDEVTDLQRRNAKAVNFGIIYGISSFGLGENLGISRKDAEKYINDYFKAYPQVKKYLD 836

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  S++   +      A+   + GTA +++K A  + 
Sbjct: 837 SLVETGIEKGFVKTYFGRIRPIPELNSNNFMKRQFGERIAMNSPVQGTAADIIKIAMNSV 896

Query: 514 HQGVLQLWKD 523
           +  +   + D
Sbjct: 897 NARLKSEFPD 906


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 99/599 (16%), Positives = 195/599 (32%), Gaps = 106/599 (17%)

Query: 2   SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAM 53
             + +D ET S       L  V +     QA      +     + ++P ++     ++  
Sbjct: 356 RLVAVDTETTSLDCMLCDLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQIG----KAEA 411

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            + L   L D+ V+ V  N  ++  +  +  GI +       T +++       S     
Sbjct: 412 LAALKPLLEDDAVLKVFQNGKYDLNVLARE-GIAVAPID--DTMIISFALDAGRSESGIG 468

Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                 E     +          C     + P+     +         EY   D + T  
Sbjct: 469 GGHGMDELAERHLGHPCISFKELCGTGRKAIPFAEVPLD------KATEYAAEDADVTWR 522

Query: 173 LFKRL---IPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L   L   +P+          +R L  +   +   G ++D   + KL E  A E K+L+ 
Sbjct: 523 LHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLSEEFATETKRLEG 582

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLA 274
           +I ++             L   LF   G               +  L+ +    +  ++A
Sbjct: 583 EIHEIAGQEFT-VGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQSVLEKLSG--DGAEIA 639

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++  R   +       + L EA++   GR+  +    GA +TGR S      QN+P +
Sbjct: 640 AKVLEWRQ-LAKLKSTYTDALQEAINPRSGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIR 697

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G  L+ AD + IE R+ A +A
Sbjct: 698 T------------------------EIGRQIRDAFVAEEGNVLLAADYSQIELRLAAHMA 733

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 +AFA GEDI+  T  + F     +V+++ RA  K +  A+ Y     G A    
Sbjct: 734 DVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLG 789

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
             A      +  + +       +                       + +  S +   +  
Sbjct: 790 VEADEAQAMIDTYFKRFPGIQKYILHTLEYVREKGYSETLFGRKTWFPRINSKNQAERQG 849

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEGGSISA 540
               A+   + GT+ +++K+A    +  +       +++   + +     + E    +A
Sbjct: 850 SERAAINAPIQGTSADIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVFELPEADVAAA 908


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              SVLA   GL     +  + L +    +             + + ++           
Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 410

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +LF     R +E    L   L    + ER L  +   +   G R+D+  +  L   +
Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E  +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L
Sbjct: 464 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L + +    GRL        A+ TGR   C    
Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLCCCDPNL 581

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   IA  G  LV  D + IE R
Sbjct: 582 QNIPVRT------------------------PLGQRIRRGFIAEEGWLLVALDYSQIELR 617

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 678 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534
             +++     A    + GTA +L+K A               +LQ+  +L         E
Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797

Query: 535 GGSISARRVAN 545
             +  A+ V  
Sbjct: 798 AVARLAKEVME 808



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           + G   E V    R   + +   +   ++              A+           + + 
Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 705

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   RR  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   M
Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
                   + G  ++L VHDE+V E P     +V  L   +M
Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 133/374 (35%), Gaps = 59/374 (15%)

Query: 177 LIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           L+PL +  E  L      +  RG R+D + +    + +     +L++ I +L      + 
Sbjct: 590 LLPLFAGIEMPLVYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELVGVEF-NI 648

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                L   LF   G+     ++    +      + +L+ +  + +L      + KL   
Sbjct: 649 NSPKQLGEILFQRLGLSYGKKTKTGYSTSAE--VLEKLSSEHPVIKLILQYRQLTKLKST 706

Query: 293 --NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             + L   V  DGR+ GT     A+ TGR S      QN+P +                 
Sbjct: 707 YADGLVSYVEGDGRIHGTFNQTIAA-TGRLSSTEPNLQNIPIR----------------- 748

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   I  +G   + AD + IE R+LA ++ +   I+A+   +DI+ 
Sbjct: 749 -------MELGRKIRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHR 801

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466
            T ++ F+TP D+V+  QR+  K +   + Y   +    +            + ++    
Sbjct: 802 LTASEVFHTPFDEVTSAQRSNAKAVNFGIVYGISSFSLGQDLDITRKEAEEYINKYFMTY 861

Query: 467 KSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACEL 505
               T+ D    E     +                            A+   + GTA ++
Sbjct: 862 PGVKTYLDGLIEEGKETGVVKTLYGRIRPVPNLTNSNFMKRSAEERIAMNSPIQGTAADI 921

Query: 506 VKKAWRAKHQGVLQ 519
           +K A    +Q + +
Sbjct: 922 MKLAMIHVNQVLKE 935


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 101/543 (18%), Positives = 178/543 (32%), Gaps = 84/543 (15%)

Query: 42  VKLWDRTEQSAMPSD-LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           V L   T ++ +P + ++  LR    D     +AHN+ F+  + ++  GI +    +  T
Sbjct: 411 VPLGHTTGEAQLPRERVIAALRPFFADPARSRIAHNAKFDIEVLERA-GIPVAGVAF-DT 468

Query: 97  SVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            + A       +LK+       LA         + +GK  +         + PY    A+
Sbjct: 469 MLAAALLDKRRNLKDLAFYELNLAAPLESIEALIGKGKNQVTFADVPIARATPYAAADAD 528

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
                +   E   R   +  ++F RL      E  L  +   +   G  +D+  +  L E
Sbjct: 529 MTLRLKPALEAKLRAAGSVADVFYRL------EMPLVPVLVRMEQAGILLDVPYMRALGE 582

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDMSEG-TLKSILSHSN 269
            + +E +++++ I  +      +      L   LF     +    +    T +  L+   
Sbjct: 583 RMGRELEQIEQQIYAIAGQTF-NINSGDQLSEVLFGPKINLPTTGLDRTRTGRYSLTAQA 641

Query: 270 ITQLAK-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           + +L         +LIL     S      ++ L   V+   GR+       GA+ TGR S
Sbjct: 642 LEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLS 700

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              VR   IA+ G  L+ AD 
Sbjct: 701 SNSPNLQNIPTRT------------------------EEGREVRRGFIAAPGHLLIAADY 736

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA + G+   I+ F  G DI+  T A+ F      V K QR I K +   + Y
Sbjct: 737 SQIELRVLAHMTGDPNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIY 796

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484
                G A+            +            + D                       
Sbjct: 797 GISPFGLAQRLGISREQARGLIDSLFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMF 856

Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRAKH------QGVLQLWKDLTEGFACV 531
                   +      A+   +  TA +++K A  A        Q   ++   + +     
Sbjct: 857 DLRVSGPRRQAAEREAINHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIFE 916

Query: 532 VQE 534
             E
Sbjct: 917 APE 919


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 95/571 (16%), Positives = 175/571 (30%), Gaps = 105/571 (18%)

Query: 4   LFIDIETRSP----QPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55
           L ID ET S       L  +   W   E A I          PV+  D      +  +  
Sbjct: 397 LAIDTETTSTHARGCDLVGISIAWQPGEAAYI----------PVRAPDGDPAINELIVIE 446

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L    +  V HN  F+ I+  ++ G+ +        +++A        L +    
Sbjct: 447 TLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQL--GGITMDTMVADYL-----LNSGGRN 498

Query: 116 LNFSEHLTKMEEGKAL-IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               +   +  +   L I             D    + V  +         DV+    L 
Sbjct: 499 HGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPY------ACEDVDVPIRLA 552

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L              + E  L  +   +   G  ++ D + K+ E   ++   L   +
Sbjct: 553 PTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALV 612

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
                    +      L + LF   G+ ++  ++    T   +LS   +     + +L  
Sbjct: 613 FSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQY 671

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             ++      ++ L + +    GR+  + +    + TGR S      QN+P +       
Sbjct: 672 RQATKLKNTYIDALPQLICDKTGRVHTSFR-QDVAATGRLSSSEPNLQNIPIRT------ 724

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R+   A   G  L+ AD + IE RVLA  +G++  I
Sbjct: 725 ------------------EQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALI 766

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            A+ +  DI+    A+       +V+ + R I K +   + Y     G AK         
Sbjct: 767 GAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEA 826

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------------- 489
              ++ + Q       F     A   +                                 
Sbjct: 827 RDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTE 886

Query: 490 -PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               A+   + GTA +L+K A    H+ + Q
Sbjct: 887 PERIAINMPIQGTAADLIKLAMLRVHEQLKQ 917



 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + D++   M    +          ++L +HDE++ E+PD    ++  +    MT  
Sbjct: 896 IQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDMIREAMTSV 955

Query: 655 PSWAKGLPLKAE 666
                 +PLK +
Sbjct: 956 ME--LDVPLKVD 965


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/496 (17%), Positives = 161/496 (32%), Gaps = 75/496 (15%)

Query: 56  DLLQYLRDETVMCVAHNSLFE-------RILFK-KTLGIDIPSKRWICTSVLARTNGLP- 106
           +  + L  +     A +   E       R +      GID+          +A     P 
Sbjct: 349 EAEEALTSDVFKKWAEDDQKEIYTFDAKRTVVALGWAGIDL--SNTTFDIQMASYLIDPA 406

Query: 107 -SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             S + A +A   +    + +E     A + KG   + P     + H+          K+
Sbjct: 407 SGSHEIADIANRKNGIQVQTDE-----AVYGKGKKQAIPEAEELSQHLGRKAAAILDLKK 461

Query: 166 DVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++E       R   L  D E  L ++   +   G  +D   +  + + + +   KL++ I
Sbjct: 462 NLEQELR-DNRQWELFQDLEMPLSVILGRMEANGVSVDQQELETIGKDLTERLAKLEQQI 520

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +       +      L   LF   G+ ++  ++    T   +L          D IL  
Sbjct: 521 YEAAGQSF-NINSPKQLGKVLFEDLGLPVLKKTKTGYSTSADVLEKLKGEHDVIDHILFY 579

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + +    G++         ++TGR S      QN+P         
Sbjct: 580 RQLGKLNSTYIEGLLKVIHPKTGKIHTIFN-QAVTQTGRLSSTEPNLQNIP--------- 629

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S  G KL  AD + IE RVLA I+ ++  I
Sbjct: 630 ---------------VRLEEGRKIRRAFVPSKPGSKLFAADYSQIELRVLAHISKDENLI 674

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF  G DI+  T +  F    ++V+ E R   K +   + Y     G ++         
Sbjct: 675 SAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVYGISDYGLSQNLGISRKKA 734

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAV 494
              + ++ ++     T+ +   AE+                          +      A+
Sbjct: 735 QTFIDKYFESYPGVKTYMEDIVAEAREQGYVTTMLQRRRYLPDLTSRNFNQRSFAERTAM 794

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +++KKA 
Sbjct: 795 NTPIQGSAADIIKKAM 810



 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLCS-LMTKN 654
           +Q  + DI+ + M +      +     V+   VHDE++ E P+    ++  L   +M   
Sbjct: 798 IQGSAADIIKKAMVDMATELERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMEST 857

Query: 655 PS 656
             
Sbjct: 858 IE 859


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 84/509 (16%), Positives = 172/509 (33%), Gaps = 81/509 (15%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-G 104
           D++E +A+  +   +    T+  V  N  ++  +       D+P K  +  +++A     
Sbjct: 408 DQSETTAILEEFRPFFESTTIEKVGQNLKYDIKVLSNY---DMPVKGQLFDTMIAHYLIN 464

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                    L+  +  +        +++    K   +               +   EY  
Sbjct: 465 PDMRHNMDVLSETYLNYQP-----VSIVELIGKKGKNQLSMR------QVPLEQQTEYAV 513

Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T +L +  I            SD E  L  +   +   G  +D D + +L + +A
Sbjct: 514 EDADITYQLKEHFIKELESGHLTKLFSDVEVPLVSVLSAMEIEGINLDPDFLGELSKALA 573

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
            +  +L++DI +       +      L   LF    +        T +   +   ++ LA
Sbjct: 574 VDIDRLEKDIYEQAGEEF-NIGSPKQLGPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLA 632

Query: 275 KDL-----ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           KD      IL            ++ L   ++       T+     + TGR S      QN
Sbjct: 633 KDHQIVADILEWRQYRKLQSTYVDALPNEINPKTNRIHTVYAQAVAATGRLSSNNPNLQN 692

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388
           +P +                              VR   +       L+ AD + IE R+
Sbjct: 693 IPIRTER------------------------GRQVRKAFVPRDENYVLLAADYSQIELRI 728

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           +A ++ ED  ++AF +G DI+ +T ++ FN P+++V++EQR+  K +   + Y     G 
Sbjct: 729 IAALSKEDTMMQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGL 788

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------------- 484
           +       S     +  + +       +   + A +                        
Sbjct: 789 SNQTDLTRSESKELIDTYYETYPKLKAYMSNQVAFARENGYVETVLGRRRYLKDINSRNA 848

Query: 485 -MQDQYPEFAVKDKLIGTACELVKKAWRA 512
            ++      AV   + G+A +++K A   
Sbjct: 849 IVRGAAERNAVNAPIQGSAADIIKLAMIN 877


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 81/516 (15%), Positives = 173/516 (33%), Gaps = 62/516 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I   A A +      + RT+ +   S    +L DE+      +     I+  K  G+ + 
Sbjct: 334 ILGFAIANEHG--NFFIRTDTALSSSLFTTWLEDESKKKSVFDGK-RAIVSLKWQGVHLR 390

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                   ++A     PS  ++     + ++                KG+    P +   
Sbjct: 391 --GIQFDLLIASYLLNPS--QSTEDVASIAKTKQYAGVQSDEAVY-GKGAKQKVPDEQVL 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A H+          ++      +  ++    +D E  L  +   +   G ++D++ + ++
Sbjct: 446 AEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEM 505

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
            E +A++ K+++++I +L      +      L + LF    + ++  ++    T   +L 
Sbjct: 506 GEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLE 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                    + IL+           +  L + V  D     T+     ++TGR S     
Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPN 624

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385
            QN+P +                              +R   I S     +  AD + IE
Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFIPSEPDWVIFSADYSQIE 660

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA IA ++  I AF +G DI+  T    F+   ++V+   R   K +   + Y    
Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISD 720

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAES 480
            G ++            ++++ +       +                            S
Sbjct: 721 YGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITS 780

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +  ++      A+   + G+A +++KKA     + 
Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKR 816


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 85/544 (15%), Positives = 182/544 (33%), Gaps = 85/544 (15%)

Query: 30  ITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           I    ++ + E    + + D +++ A+   + + L DE +  + H+   E    +     
Sbjct: 346 ILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHE---IRHFYVH 402

Query: 87  DIPSKRWICTSVLARTNGLPS----SLKNACLAL---NFSEHLTKMEEGKALIARFCKGS 139
           DI  K     +++      P+    +LK+                  +GK LI+      
Sbjct: 403 DIEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPK 462

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            D   Y C R + +       +   +      EL K      + E  L  +   +  +G 
Sbjct: 463 EDLMKYLCQRVSVIGKIYPEIKAKMQ----ELELEKLYY---EVELPLVEVLAAMEYKGI 515

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
           ++D  ++  L+    ++   L + I +L +    +      L   LF    +  +  ++ 
Sbjct: 516 KVDRSMLEILEIEFGEQIDLLTKAIHELAETNF-NINSPKQLGEVLFEKLELPPIKKTKT 574

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315
              T   +L            IL     +      ++ L   ++   GR+         +
Sbjct: 575 GYSTNAEVLEKLQDQHDIIPKILEYRQVTKLKSTYVDGLLNIINPETGRIHSNFN-QTVT 633

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                                +R   +A+   +
Sbjct: 634 TTGRISSTEPNLQNIP------------------------IKLEMGRRLRKVFVANENHQ 669

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + +E RVLA I  ++  + AF   +DI+  T A+ F+ P+++V+   R+  K +
Sbjct: 670 FIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAV 729

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G ++            +  +     S   + D                 
Sbjct: 730 NFGIVYGISDYGLSQNLNITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFN 789

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQL 520
                 + +S +  ++      A+   + G+A +++K A    ++           +LQ+
Sbjct: 790 RRRYLPELKSRNFNIRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQGLTSKLILQV 849

Query: 521 WKDL 524
             +L
Sbjct: 850 HDEL 853



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTP 640
            R++G ++  N  +Q  + DI+   M    +   + G    ++L VHDE++ E PD  
Sbjct: 804 IRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNE 861


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 135/392 (34%), Gaps = 65/392 (16%)

Query: 156 WQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           WQ      +   +    EL++      D E  L  +   +   G  +D + +L   E + 
Sbjct: 449 WQAKNRIFQELKDTEQWELYR------DVEEPLVPVLYRMEKAGILVDKEALLSYGEELK 502

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +    L E+I  +      +      L   LF    +     ++    + +    + +L 
Sbjct: 503 KNIAMLQEEIYAMAGEEF-NINSPQQLGGILFEKMQLPGGKKTKTGYSTAVD--VLEKLQ 559

Query: 275 KDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +D  +           KLN+     LS  V  D R+ G+ Q    + TGR S      QN
Sbjct: 560 EDYPIVGKILEYRTYSKLNSTYAEGLSNYVGEDQRIHGSFQ-QMVTATGRLSSTEPNLQN 618

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                               RS  I   G   + AD + +E R+L
Sbjct: 619 IPIRT------------------------EMGRVFRSVFIPKEGSVFLDADYSQVELRLL 654

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++ ++  I+A+    DI+  T ++ F+ P+++V+ E R   K +   + Y     G +
Sbjct: 655 ASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVYGISAFGLS 714

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484
           +            ++++  +      + D E A +                      +  
Sbjct: 715 EGLSISRQEAKEYIERYFTSYPKVKEYLDGEVAFAREHSFVKTLFGRRRPLPEIHASNFM 774

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +      A+   + GTA +++KKA     Q 
Sbjct: 775 RRSFSERVAMNAPIQGTAADIIKKAMVIVDQK 806



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+ + M    +  ++      IVL +HDE++ E       +V  +
Sbjct: 788 IQGTAADIIKKAMVIVDQKLSEKNCQSRIVLQIHDELLLEVVKEELETVKDI 839


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 132/382 (34%), Gaps = 64/382 (16%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            + E  L      +   G RI+ + + K  E + ++  +L+ +I ++      +      
Sbjct: 472 LEIEMPLVFTLFDMEQAGVRIEAEELKKYGEQLGEQIVQLESEIYEMAGENF-NINSPKQ 530

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L + LF    +     ++    T   +L          D IL     +       + L+ 
Sbjct: 531 LGVILFEKLQMPHAKKTKTGYSTAADVLEKLAPEFPIVDKILEYRQLTKLKSTYADGLAN 590

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +  DGR+ GT      + TGR S      QN+P                          
Sbjct: 591 YIGPDGRIHGTFN-QTITATGRISSTEPNLQNIP------------------------VR 625

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +   G   + AD + IE R+LA  +G+   I+A+   +DI+  T ++ F
Sbjct: 626 MELGRLIRKVFVPQEGYVFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVF 685

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            TP D+V+  QR   K +   + Y     G ++            ++ + +       F 
Sbjct: 686 KTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASQYIESYFETYPGIKKFL 745

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
           D                       + +S +   ++     A+   + GTA +++K A   
Sbjct: 746 DDSVTHAKEEGYAVTLFGRRRPIPELKSSNFMQRNFGERVAMNAPIQGTAADIMKIAMIG 805

Query: 511 --------RAKHQGVLQLWKDL 524
                   R K + +LQ+  +L
Sbjct: 806 VNRELKEKRMKSRMILQVHDEL 827


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 154/520 (29%), Gaps = 97/520 (18%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
                + + + +   D  V    HN+  F R         D         S++A     P
Sbjct: 356 AADLEILAGVRRLFADAAVAKHMHNAKDFLRWA------PDFDLANICFDSMVAAYLVNP 409

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +                      +        +   P     A      +      +  
Sbjct: 410 LAANQQLED--------------VVHQYLNLVLVPDGPAAP--ATAADCIRRLYPVLR-- 451

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             A    ++        E  L  +   +   G  +D D +  L E       +L   I  
Sbjct: 452 --AELRGYELDYLFDRVELPLTRVLADMELAGVAVDRDQLEALSEEFGTRAGELAARICT 509

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L   LF   G+     ++           +  LA+   +  L    
Sbjct: 510 LAGEDF-NLNSPRQLGYILFEKLGLPAGKKTK--TGYSTDAGVLLDLAEKHEIAALLLEY 566

Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             ++KL T     L+  V    GRL  TL     + TGR S      QN+P +       
Sbjct: 567 RQLIKLKTTYADGLAALVDPATGRLHTTL-HQTVTNTGRLSSAEPNLQNIPIR------- 618

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   I  +  + L+ AD + IE R+LA ++G+   I
Sbjct: 619 -----------------MEEGRRIRKVFIPRDPARVLLTADYSQIELRILAHLSGDPALI 661

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF + +DI+  T A+ F  P++ V+ E R+  K +   + Y     G A+  K   +  
Sbjct: 662 TAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGIIYGISDFGLARDLKVTRAEA 721

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494
              +Q++   +     + D     +                                 AV
Sbjct: 722 REYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRRRPLPELFSANHTVRSFGERAAV 781

Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
              + GTA +++K A    H            +LQ+  +L
Sbjct: 782 NTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHDEL 821



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 27/142 (19%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-------DVKGDCSYLNTATSQLMRE 590
             AR         +   K  +   + S+R   Y            +    N         
Sbjct: 719 AEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRRRPLPELFSANHTVR----- 773

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFS 643
            ++G +   N  +Q  + DI+   M        +      ++L VHDE++ + P     +
Sbjct: 774 -SFGERAAVNTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHDELLFDVPAEEVCT 832

Query: 644 VGTLC-SLMTKNPSWAKGLPLK 664
           V  L  + M         LPL 
Sbjct: 833 VAPLVKAEMETV------LPLN 848


>gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87]
 gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87]
          Length = 887

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 85/523 (16%), Positives = 177/523 (33%), Gaps = 65/523 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I    +  DD    +    E      DL+Q+L D+  +   +++     +    L IDI 
Sbjct: 344 ILKFGFYADDS--HVVINAEDIKQYQDLVQWLEDKNTIKTVYDAKK-TYVAAHRLNIDIQ 400

Query: 90  SKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           + ++    + +       S+ +   +   + ++  K       ++ + KG     P +  
Sbjct: 401 NVQF-DVMLSSYIIDPSRSIDDVKSVVSLYGQNYVKDN-----VSVYGKGKKHQVPEEEV 454

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              HV +        K ++EA  E + ++  L D E  L  +   + + G   D++ + +
Sbjct: 455 LNKHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQ 514

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           ++  I ++   L ++I +       +      L + LF    + ++  ++    T   +L
Sbjct: 515 MENEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVL 573

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                     + IL     S      +  L + +S D R+        A +TGR S    
Sbjct: 574 EQLQGEHPIIEHILEYRQLSKLQSTYVEGLQKVISKDQRIHTRFNQTLA-QTGRLSSVDP 632

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGI 384
             QN+P +                              +R     ++    ++ AD + I
Sbjct: 633 NLQNIPIR------------------------LEEGRKIRKAFKPTDKDSVILSADYSQI 668

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E RVLA I  ++   +AF NG DI+  T  K FN   ++V    R   K +   + Y   
Sbjct: 669 ELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNFGIVYGIS 728

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAE 479
             G ++            +  +  +      +                            
Sbjct: 729 DYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAEGYVETLLHRRRYIPDIT 788

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S +  ++      A+   + G+A +++K A    ++ V     
Sbjct: 789 SRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFYEKVKDTNY 831


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 87/560 (15%), Positives = 172/560 (30%), Gaps = 97/560 (17%)

Query: 41  PVKLW--DRTEQSAMPSDLLQYLRD-------ETVMCVAHNSLFERILFKKTLGIDIPSK 91
           PVKL   +   Q+  P  L + + +       + +  + HN  F+    +     +    
Sbjct: 398 PVKLPPPELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPC 457

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T + A       +  +     +    L         IA            D     
Sbjct: 458 AIFDTMIAAWLLDPDRTSFSLDSLASSLLKLQT-------IAYKDVVPKGKIFSDV---- 506

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
               ++    Y   D + T + ++ L+P              E  L  L   +   G  +
Sbjct: 507 ---PYEQAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFL 563

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
             + + +  E + +E    + +I  +       +     L+  LF    +     ++   
Sbjct: 564 KKEELAEFSEELGKEIIVHEREIFDIVGHEFNIA-SPKQLQEVLFTELKLPTGKKTK--T 620

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASR 316
                 S +  LA + ++        A+ KL     + L      +GR+  +    G + 
Sbjct: 621 GYSTDTSVLEVLASEHVIPAKILEYRALTKLKSTYTDALPALADKNGRVHTSFIQTG-TA 679

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                          A   +R    A  GK L
Sbjct: 680 TGRLSSRDPNLQNIPIR------------------------DEAGRRIRKAFQAEKGKNL 715

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD A IE  +LA ++ +   ++AF  G D++  T A  F  PI +V  + R I K + 
Sbjct: 716 ISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTIN 775

Query: 437 LALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---- 488
             + Y   A       +         ++ + +       F +  +  +      +     
Sbjct: 776 FGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFMEELKESARRKGYVETLMGR 835

Query: 489 -----------------YPEFAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLT 525
                                A+   + G+A ++VK A          H+   +L   + 
Sbjct: 836 RRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVH 895

Query: 526 EGFACVVQEGGSISARRVAN 545
           +   C   E  + + + +  
Sbjct: 896 DELICEAPEKETETVKTLLR 915



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 22/219 (10%)

Query: 454 HCGLDLQQFSQNVKSTSTFE-DWEQAESHHLWMQDQYPEFAV-----KDKLIGTACELVK 507
             G  +++  Q  K  +    D+ Q E   L    Q            D    TA  +  
Sbjct: 698 EAGRRIRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFG 757

Query: 508 KAWRAKHQGVLQLWKDLTEGF-----ACVVQEGGSISARRVANVPRLVMRRHKR---DVH 559
                    + ++ K +  G      A  +     I  R+ A+      + +      + 
Sbjct: 758 MPIGEVLPDMRRIAKTINFGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFME 817

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT--ENIVQAISRDILCEGMKNA 617
            +  S+RR  Y +          A +   +    G +       +Q  + DI+   M   
Sbjct: 818 ELKESARRKGYVETLMGRRRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKV 877

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                       ++L VHDE++ E P+    +V TL   
Sbjct: 878 QNALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQ 916


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 90/583 (15%), Positives = 185/583 (31%), Gaps = 105/583 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCR 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +N+   R + +K LGID           LA     P   +    +L  
Sbjct: 376 EMFESKEIKKITYNAKNPRTILRK-LGIDFN--GIKFDINLAAYLIDPVRKEYEISSLAS 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                 +         F K    +             +++  E   +D +    L+K   
Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVL-EEKIKDQDMEELLYK--- 476

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 477 ----VEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEKF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R+  K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
               H+           +LQ+  +L         E      ++
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELERIKALVKK 849


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 89/527 (16%), Positives = 159/527 (30%), Gaps = 92/527 (17%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
             V+ V  N  ++  +        +  K  +  ++L+     P  +     LA  +  + 
Sbjct: 405 ADVLIVGQNLKYDLTVLA---SYGVKPKGRLFDTMLSHYVVQPELAHNMDYLASVYLNYR 461

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179
                 + LI    +G  +    D              EY   D + T  L   L     
Sbjct: 462 PI--PIEQLIGPKGRGQRNMGDLDPKDV---------FEYACEDADVTLRLMAPLEKAMR 510

Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   +   G  +D + + ++         KL+ +I +L     
Sbjct: 511 ENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIYQLAGHPF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                   +   LF    ID       + +   S   + +L+    +     +   + KL
Sbjct: 571 MI-TSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILAHRGLKKL 629

Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                  L + V+   G L  T      + TGR S      QN+P               
Sbjct: 630 LSTYVEALPKLVNPQTGHLHTTFN-QAVTSTGRLSSSNPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                      G     +R   I   G     AD + IE R++A ++ +   I+AF  GE
Sbjct: 674 ---------VRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEAFKKGE 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T A+ F   + +VS+++R   K     + Y     G A+      +     +  +
Sbjct: 725 DIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYGISAFGLAERMDVSRTEARELIDNY 784

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
                    + D                          SH+  ++      AV   + GT
Sbjct: 785 FSTYPKVKEYMDSSIEKARRRGYIETAFGRRQYLADINSHNAVVRGYAERVAVNAPIQGT 844

Query: 502 ACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSI 538
           A +++K A     Q           +LQ+  +L         E    
Sbjct: 845 AADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNFSIPPAELECAKA 891


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 91/532 (17%), Positives = 172/532 (32%), Gaps = 97/532 (18%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNFS 119
            + ++  V  N  ++ ++ K   G ++     I  ++LA     P      +   A    
Sbjct: 441 NNASITWVGQNIKYDLLMLK-WYGFELQGN--IFDTMLAHYVIEPDGKSSMDLLSAKFLG 497

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                + E   LI +  KG  +    +  +           EY   D + T +L    +P
Sbjct: 498 YQPVSITE---LIGKKGKGQGNMRDIEIEKI---------KEYAAEDADITLQLKNVFLP 545

Query: 180 LS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           L           + E  L  +   +   G RID   +     ++ ++  + ++ + +   
Sbjct: 546 LIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQAG 605

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLAS 284
                +     L   LF    +D       T +       + +LA        IL+    
Sbjct: 606 VKFNLA-SPKQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKLANQHKICNDILSFREL 664

Query: 285 SGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342
           +      ++ L + ++   GR+  +      + TGR S      QN+P R ER  E    
Sbjct: 665 TKLKNTYVDALPQLINSKTGRVHTSYA-QAVAVTGRLSSTNPNLQNIPVRTERGRE---- 719

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   I       LV AD + IE R++A I+ +    +A
Sbjct: 720 ---------------------IRKAFIPRDENHVLVSADYSQIELRIVAAISADVNMCEA 758

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F  G+DI+  T AK FN    +V+KE R   K +   + Y  G    A       +    
Sbjct: 759 FKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGIIYGQGAFGLADNLGISRTEAKA 818

Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496
            +  + +   +   + D     +                      +  ++      A+  
Sbjct: 819 IIDNYKKQFPNIQQYMDNTINFAKETGYVETLMGRKRWLKDINSANFTVRGFAERNAINS 878

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538
            + GTA +++K A             K + +LQ+  +L         E    
Sbjct: 879 PIQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDELVFDVLKEELEKVKP 930


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
            Chicago]
          Length = 1015

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 95/559 (16%), Positives = 167/559 (29%), Gaps = 92/559 (16%)

Query: 55   SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112
              L +   DET+  V HN  F+  +  +    +  +     T V A            + 
Sbjct: 494  HQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDV 553

Query: 113  CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              A  F       EE  A    F        PY+C              Y   D + T  
Sbjct: 554  LAASFFQIRTITFEEVVAKGQTFA-----HVPYECA-----------VRYAAEDADITFR 597

Query: 173  LFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            L+  L    +           E  L  +   + + G  +  D+V +L    +   ++ + 
Sbjct: 598  LYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEH 657

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            DI  L      +      L+  LF    +      + T      HS + +LA+   +   
Sbjct: 658  DIFSLAGHEF-NIGSPKQLQTVLFQELHLPPGK--KNTQGYSTDHSVLKKLARKHPIAEK 714

Query: 283  ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                  + KL      +L++     GR+  +    G + TGR S      QN+P +    
Sbjct: 715  ILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIG-TATGRLSSRNPNLQNIPIKS--- 770

Query: 338  EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                      +R    A+ G +L+ AD   IE  VLA ++ +  
Sbjct: 771  ---------------------TEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRN 809

Query: 398  KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMAS 453
             + AF    DI+  T A  FN  ID V    R I K +   + Y   A       K    
Sbjct: 810  LLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQK 869

Query: 454  HCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEF 492
                 + ++ +       F                           +S +   + +    
Sbjct: 870  EAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERM 929

Query: 493  AVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            A+  ++  +A ++VK A        A+     QL   + +          +   + +   
Sbjct: 930  ALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFA 989

Query: 547  PRLVMRRHKRDVHIVLPSS 565
                       + I + S 
Sbjct: 990  EMEHAVELSIPLRIHVESG 1008



 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLT 627
           G   Y+ T  S+   ER    ++  N  +Q+ + DI+   M    +          ++L 
Sbjct: 907 GRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQ 966

Query: 628 VHDEIVSETPDTPYFSVGTL 647
           VHDE++ E P      V  +
Sbjct: 967 VHDELIFEAPAAETAIVKEI 986


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 95/559 (16%), Positives = 167/559 (29%), Gaps = 92/559 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112
             L +   DET+  V HN  F+  +  +    +  +     T V A            + 
Sbjct: 476 HQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDV 535

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             A  F       EE  A    F        PY+C              Y   D + T  
Sbjct: 536 LAASFFQIRTITFEEVVAKGQTFA-----HVPYECA-----------VRYAAEDADITFR 579

Query: 173 LFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L    +           E  L  +   + + G  +  D+V +L    +   ++ + 
Sbjct: 580 LYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEH 639

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           DI  L      +      L+  LF    +      + T      HS + +LA+   +   
Sbjct: 640 DIFSLAGHEF-NIGSPKQLQTVLFQELHLPPGK--KNTQGYSTDHSVLKKLARKHPIAEK 696

Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                 + KL      +L++     GR+  +    G + TGR S      QN+P +    
Sbjct: 697 ILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIG-TATGRLSSRNPNLQNIPIKS--- 752

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R    A+ G +L+ AD   IE  VLA ++ +  
Sbjct: 753 ---------------------TEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRN 791

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMAS 453
            + AF    DI+  T A  FN  ID V    R I K +   + Y   A       K    
Sbjct: 792 LLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQK 851

Query: 454 HCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEF 492
                + ++ +       F                           +S +   + +    
Sbjct: 852 EAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERM 911

Query: 493 AVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           A+  ++  +A ++VK A        A+     QL   + +          +   + +   
Sbjct: 912 ALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFA 971

Query: 547 PRLVMRRHKRDVHIVLPSS 565
                      + I + S 
Sbjct: 972 EMEHAVELSIPLRIHVESG 990



 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLT 627
           G   Y+ T  S+   ER    ++  N  +Q+ + DI+   M    +          ++L 
Sbjct: 889 GRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQ 948

Query: 628 VHDEIVSETPDTPYFSVGTL 647
           VHDE++ E P      V  +
Sbjct: 949 VHDELIFEAPAAETAIVKEI 968


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 131/372 (35%), Gaps = 58/372 (15%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D E  L      +   G RI+ + +    E +  + ++L+++I +       +      
Sbjct: 472 TDIEMPLVFTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYEAAGEEF-NINSPKQ 530

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           L + LF   G+     ++       +   + +LA D  +         + KL     + L
Sbjct: 531 LGVILFDKMGLKGGKKTK--TGYSTAADVLDKLAPDYPVVAQILEYRQLTKLKSTYADGL 588

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           S  +S DGR+ G       + TGR S      QN+P                        
Sbjct: 589 SNYISGDGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------ 623

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   I  +G   + AD + IE RVLA  +G++  I A+   +DI+  T ++
Sbjct: 624 VRMELGRLIRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQ 683

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P  +V+  QR   K +   + Y     G ++            +  + +       
Sbjct: 684 VFHVPFGEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFKTYPGIKL 743

Query: 472 FEDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAW 510
           F D   A +  +                    +MQ  +    A+   + GTA +++K A 
Sbjct: 744 FLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 803

Query: 511 RAKHQGVLQLWK 522
              ++ + +   
Sbjct: 804 IGVNRRLKEKHM 815


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/686 (16%), Positives = 211/686 (30%), Gaps = 173/686 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAMPS 55
           + ID+ET S  P           +A I   + A  D                 ++  +  
Sbjct: 324 ISIDLETSSLDP----------HEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLL 373

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNAC 113
            L + L D     V  N  F+  + +K     I        +++A     P S       
Sbjct: 374 RLKELLEDSGTKIVGQNLKFDYEILEKH---GIEPVVPHFDTMIAAYLLNPDSRRFNLDD 430

Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           LAL F  +     +++     L  +F K S+                +   +Y   D + 
Sbjct: 431 LALKFLGYRTTSFSELMNKNQLKDQFEKVSV----------------EEAAKYSVEDADI 474

Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
              L++ L                E +L  +   +   G  ++++ +  L E   +   K
Sbjct: 475 ALRLYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGK 534

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           + E++ +L      +      +   LF   G++    ++     T  ++L          
Sbjct: 535 IREELFELAGEPF-NPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPII 593

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +L+           L+TL   V+   GR+  +    G + TGR S      QNLP   
Sbjct: 594 QKLLDYRKYQKLKSTYLDTLPTLVNPVTGRIHASYHQTG-TGTGRLSSSNPNMQNLP--- 649

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIA 393
                                  G     +R C++      K++ AD + IE RVLA  +
Sbjct: 650 ---------------------IKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFS 688

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  I AF NGED++  T ++ +   +  V+ E R +GK++  ++ Y            
Sbjct: 689 EDERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGIS--------- 739

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                     +  L ++    E  + +                 
Sbjct: 740 ----------------------PYGLARRLKIKTHIAENMISNYF-------------NA 764

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +           V+ E       R     +  +   +    + +    R+  +  
Sbjct: 765 YPGVRKF-------INEVIHEAKEKGYVRTLFGRKREIPHFRTRNKMKIQEGERIAINTP 817

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                                       +Q  + DI+   M    K           +L 
Sbjct: 818 ----------------------------IQGTAADIMKLAMIKIHKMVKEEGLEAFPILQ 849

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTK 653
           VHDE+V E P T    V  +C ++T+
Sbjct: 850 VHDELVFEAPATE---VDRVCDILTR 872


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/518 (16%), Positives = 182/518 (35%), Gaps = 63/518 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    + +D E   + D       P +L+++L +E    V +++    ++  +   ++I
Sbjct: 334 DILKFGF-YDKERYIVVDADNIKDYP-ELIKWLENENSKKVVYDAKKTFVIAHR---LNI 388

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
             +  +  ++LA     PS   +   ++  + H T ++E    ++ + KG     P    
Sbjct: 389 NIQNIVFDAMLASYIFDPSRTIDDVYSVVTNYHQTYVKED---VSIYGKGKKRHVPDTEI 445

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              H+ +     +  K  +E   E  +++  L D E  L  +   + + G   D++ +  
Sbjct: 446 LNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQH 505

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           +Q+ + ++ + L + I         +      L + LF    + ++  ++    T   +L
Sbjct: 506 MQQELQEKLELLVQRIHDAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVL 564

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                     + IL     +      +  L + +S+D R+        A +TGR S    
Sbjct: 565 EQLQNEHPIINDILEYRQLAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDP 623

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P +                              +R     S     ++ AD + I
Sbjct: 624 NLQNIPIR------------------------LEEGRKIRKAFKPSSEDSVILSADYSQI 659

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E RVLA I  +D   +AF +G+DI+  T  K F    ++V+   R   K +   + Y   
Sbjct: 660 ELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYGIS 719

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAE 479
             G ++          + +  +  +      +                            
Sbjct: 720 DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRRRYIPDIT 779

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           S +  ++      A+   + G+A +++K A     + V
Sbjct: 780 SRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQV 817



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 99/307 (32%), Gaps = 41/307 (13%)

Query: 384 IEARVLAWI--AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK------VSKEQRAIGKVM 435
           +E R LA +     +   K  +N + I+       FN  + +      V    +     +
Sbjct: 578 LEYRQLAKLQSTYVEGLQKVISNDKRIHTR-----FNQTLAQTGRLSSVDPNLQN----I 628

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
            + L      +     +S   + L      ++        +       ++  Q    A  
Sbjct: 629 PIRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATA 688

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            K+ G   E V    R +    + G++     +++             A+   +      
Sbjct: 689 RKVFGVEAEEVTDLMRRQAKAVNFGIV---YGISDYGLSQSLNITRKEAKIFIDDYLASF 745

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              K+ +  ++  ++   Y +       Y+   TS+    R +  +   N  +Q  + DI
Sbjct: 746 PGVKQYMSDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADI 805

Query: 610 LCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGT----LCSLMTKNPSWAK 659
           +   M    K      Y   ++L VHDE++ E P +    V      +  +M        
Sbjct: 806 IKLAMVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSE---VEEFSLFVEDIMEHALD--L 860

Query: 660 GLPLKAE 666
            +PLK +
Sbjct: 861 DVPLKVD 867


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 187/563 (33%), Gaps = 100/563 (17%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +L ID ET S       L  + +     +A      + +           ++  +   L 
Sbjct: 345 ELAIDTETSSLDAHQTDLVGISLSTKIGKACYIPIGHKFKG-------CLKKETVIKKLK 397

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D++V  +  N  F+ I+  K  GI++ S             G      +    ++ 
Sbjct: 398 PLLEDKSVKKIGQNIKFDFIVLYKH-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHL 456

Query: 119 SEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                  +E    GK  I  F    +D                   EY   D + T  L+
Sbjct: 457 QHKTISFKEIVGTGKKEIN-FSDVELDKAM----------------EYAAEDADITYRLY 499

Query: 175 K------RLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           K      +L  L++     E+ L  +   +   G +ID   +  L E   ++  KL++++
Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILNRLA 283
            K++      +     L   ++    I ++  +        + S +  LA K     +L 
Sbjct: 560 FKISKKKFNIA-SPKQLGEIIYNDLKIAVLKKTRKG-SFATNASVLEDLAFKGHEFPKLI 617

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L E ++ + +   T     A+ TGR +      QN+P +     
Sbjct: 618 LDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSED-- 675

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G  L+ AD   IE R+LA +A     
Sbjct: 676 ----------------------GKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            KAF+N EDI+  T ++ FN  I KV ++ R   K +   + Y     G AK        
Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHE 773

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               L  +         + D                     +      +  +++     A
Sbjct: 774 ADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAA 833

Query: 494 VKDKLIGTACELVKKAWRAKHQG 516
           +   + G+A E+++ A    ++ 
Sbjct: 834 INAPIQGSASEIMRLAMIRLNKK 856



 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 566 RRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNGY- 622
           R+  Y  ++ G  S+ N    +    R +  +   N  +Q  + +I+   M    K    
Sbjct: 800 RKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGSASEIMRLAMIRLNKKFES 859

Query: 623 ------DIVLTVHDEIVSETPDTPYFSVGTL 647
                  I+L +HDE++ E P     ++  +
Sbjct: 860 IKNNKSKILLQIHDELIFEVPVKEVKNITEI 890


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/518 (16%), Positives = 182/518 (35%), Gaps = 63/518 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    + +D E   + D       P +L+++L +E    V +++    ++  +   ++I
Sbjct: 334 DILKFGF-YDKERYIVVDADNIKDYP-ELIKWLENENSKKVVYDAKKTFVIAHR---LNI 388

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
             +  +  ++LA     PS   +   ++  + H T ++E    ++ + KG     P    
Sbjct: 389 NIQNIVFDAMLASYIIDPSRTIDDVYSVVTNYHQTYVKED---VSIYGKGKKRHVPDTEI 445

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              H+ +     +  K  +E   E  +++  L D E  L  +   + + G   D++ +  
Sbjct: 446 LNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQH 505

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           +Q+ + ++ + L + I         +      L + LF    + ++  ++    T   +L
Sbjct: 506 MQQELQEKLELLVQRIHDAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVL 564

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                     + IL     +      +  L + +S+D R+        A +TGR S    
Sbjct: 565 EQLQNEHPIINDILEYRQLAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDP 623

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P +                              +R     S     ++ AD + I
Sbjct: 624 NLQNIPIR------------------------LEEGRKIRKAFKPSSEDSVILSADYSQI 659

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E RVLA I  +D   +AF +G+DI+  T  K F    ++V+   R   K +   + Y   
Sbjct: 660 ELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYGIS 719

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAE 479
             G ++          + +  +  +      +                            
Sbjct: 720 DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRRRYIPDIT 779

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           S +  ++      A+   + G+A +++K A     + V
Sbjct: 780 SRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQV 817



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 99/307 (32%), Gaps = 41/307 (13%)

Query: 384 IEARVLAWI--AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK------VSKEQRAIGKVM 435
           +E R LA +     +   K  +N + I+       FN  + +      V    +     +
Sbjct: 578 LEYRQLAKLQSTYVEGLQKVISNDKRIHTR-----FNQTLAQTGRLSSVDPNLQN----I 628

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
            + L      +     +S   + L      ++        +       ++  Q    A  
Sbjct: 629 PIRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATA 688

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            K+ G   E V    R +    + G++     +++             A+   +      
Sbjct: 689 RKVFGVEAEEVTDLMRRQAKAVNFGIV---YGISDYGLSQSLNITRKEAKIFIDDYLASF 745

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              K+ +  ++  ++   Y +       Y+   TS+    R +  +   N  +Q  + DI
Sbjct: 746 PGVKQYMSDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADI 805

Query: 610 LCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGT----LCSLMTKNPSWAK 659
           +   M    K      Y   ++L VHDE++ E P +    V      +  +M        
Sbjct: 806 IKLAMVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSE---VEEFSLFVEDIMEHALD--L 860

Query: 660 GLPLKAE 666
            +PLK +
Sbjct: 861 DVPLKVD 867


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/503 (17%), Positives = 169/503 (33%), Gaps = 85/503 (16%)

Query: 53  MPSDLLQYLRDETVMCVA---------HNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           +P++L   L  ET    A         +++    +  +      I  K      ++A   
Sbjct: 347 IPAEL--ALSSETFKKWAEDESKKKIVYDAKRTEVSLRHH---GIHLKGVEFDLLIASYI 401

Query: 104 GLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
             PS       +      ++   T         A + KG+    P     A H+      
Sbjct: 402 INPSESIEDFASVAKRHGYNGVQTDD-------AVYGKGAKRKIPAQEELAGHLARKAAA 454

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            E  +  +E   +  ++     D E  L L+   +  +G ++DL+ +  + E I Q+   
Sbjct: 455 LEALRDKLEDELKENRQYELFYDLEMPLSLILADMESQGVKVDLERLQAMGEQINQKLGD 514

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           ++E I +L      +      L + LF   G+  V  ++       S   + +L     +
Sbjct: 515 IEERIHELAGEAF-NINSPKQLGVILFEKLGLPPVKKTKTG--YSTSADVLEKLEDKHEI 571

Query: 280 NRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            R       + KL +      L       G++         ++TGR S      QN+P +
Sbjct: 572 IREILQYRQLGKLQSTYIEGLLKVTDKKTGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR 630

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392
                                         +R   + S  G  +  AD + IE RVLA I
Sbjct: 631 ------------------------LEEGRKIRQAFVPSEKGWVIFAADYSQIELRVLAHI 666

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           AG++  I+AF   +D++  T  + F+    +V+   R   K +   + Y     G ++  
Sbjct: 667 AGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNFGIVYGISDYGLSQSL 726

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487
                  G  + ++ ++      + D                       +  S +  ++ 
Sbjct: 727 GITRKEAGQFIDRYLESYPGVREYMDDIIQEAKQKGYVSTLLHRRRYLPEITSRNFNLRS 786

Query: 488 QYPEFAVKDKLIGTACELVKKAW 510
                A+   + G+A +++KKA 
Sbjct: 787 FAERTAMNTPIQGSAADVIKKAM 809


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 179/576 (31%), Gaps = 97/576 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAMPSDLL 58
           D ET S       L  +G              +      D      WD  +QS  P    
Sbjct: 364 DTETTSLDPRDAQLVGIGCCWSERDVAYLPLGHRQGSNLD------WDLVKQSLQPIW-- 415

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACL 114
               D        N  ++  +F+      I  +      +LA     P +       A  
Sbjct: 416 ---EDPNRPKSLQNCKYDLSIFRAH---SIRLQGIQFDPMLASYVLNPEASHNLADLAAS 469

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN      +   GKA          D P           A+  +        E  ++  
Sbjct: 470 YLNLPTTSYEKLLGKAE------SLADLPIAKVAEYCGTDAYCAYRLV-PILTEKLQQTD 522

Query: 175 KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            RL  L    E  L  + + +   G RID + + +  + + +E   L++        +  
Sbjct: 523 PRLWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQAGEVF- 581

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L   LF    +D+    +         S + +L  D  +         + KL 
Sbjct: 582 NLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVLEKLEGDHPVIETILQYRTLAKLK 641

Query: 293 ----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L   V  D GR+  +      + TGR S      QN+P +              
Sbjct: 642 STYVDALPALVRRDTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIRS------------- 687

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   +   G  L  AD + IE R+LA ++ E   I+ F +GED
Sbjct: 688 -----------EFSRRIRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLIECFRSGED 736

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFS 463
           ++  T    F     +V+ E+R + K +   + Y  GA+ F   A    +     L++F+
Sbjct: 737 VHTLTARLLFEK--QEVTSEERRLAKTINYGVIYGMGAQRFARTAGVSLAEAKEFLRRFN 794

Query: 464 QNVKSTSTFEDWEQAESHH-------LWMQDQYP--------------EFAVKDKLIGTA 502
           +       +    +A           L  +  +P                AV   + G+A
Sbjct: 795 ERYAGVFAYLRATEAFVEKHGYVETLLGRRRYFPNLSQLSGHRKQAELRAAVNAPIQGSA 854

Query: 503 CELVKKAWRAKHQG----VLQLWKDLTEGFACVVQE 534
            +++K A     +       +L   + +     V+ 
Sbjct: 855 SDIIKVAMVRLQEKLQNFRSRLLLQVHDELVFEVEP 890


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/507 (17%), Positives = 170/507 (33%), Gaps = 88/507 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L     ++ +  V+HN      +FKK   + I        + +A    + SS     L  
Sbjct: 379 LKDIFENDKIEKVSHNIKVPYTVFKK---MGINFTSVKFDTEIAAYL-IDSSRGEYGLNS 434

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              ++L  M +G+          I        +        +F    K+       + + 
Sbjct: 435 IIQDYLKIMLQGEE-------DEIRVKENSLLK-------DVFETLNKQ--IKELNMEEL 478

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E+ L L+   +   G+++D   + +L E    E  KL +DI  L +    +  
Sbjct: 479 LY---EVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDIYGLAEEEF-NIN 534

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L          + I      +      + 
Sbjct: 535 SPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYYRQFTKLYSTYIE 594

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L   +  DG++  +      + TGR S      QN+P +                    
Sbjct: 595 GLKAVIDKDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------- 634

Query: 354 ADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   +       ++ AD + IE RVLA IA ++  I AF N  DI+  T
Sbjct: 635 -----EMGREIRKVFVPEDENSIILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKT 689

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468
            ++ F  PID+V+K QR+  K +   + Y  G    AK  K         +  + +    
Sbjct: 690 ASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIGDFSLAKDLKISRKEAKNYIDTYFERYPG 749

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + D                       + ++    ++      A+   + G+A +++K
Sbjct: 750 VKRYMDNVIKQAEDNLYVTTIMNRRRFIPEIKNSKKMVKAFGERLAMNTPIQGSAADIIK 809

Query: 508 KAWRA----------KHQGVLQLWKDL 524
            +             K + +LQ+  +L
Sbjct: 810 MSMVNVYNILKSKNLKSKVILQVHDEL 836



 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 584 TSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSET 636
           + ++++   +G +L  N  +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 SKKMVK--AFGERLAMNTPIQGSAADIIKMSMVNVYNILKSKNLKSKVILQVHDELILNV 840

Query: 637 PDTPYFSVGTLCS-LM 651
                  V  L    M
Sbjct: 841 YKDELEEVKELVKNQM 856


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 101/619 (16%), Positives = 191/619 (30%), Gaps = 119/619 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------KLWDRTEQSAMPSDL 57
             D ET S  PL           A +   + A  +             +  E++      
Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411

Query: 58  LQY------LRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSS-- 108
                    L D  +  + HN  F+ +      L   I +  +  T + A       S  
Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISANLF-DTMIAAWLLDPARSSY 470

Query: 109 ----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               L  + L +        +++G+                           +    Y  
Sbjct: 471 GMDKLAESILGVKTIRFKDLVKQGQNFSDI--------------------PLKEACPYAA 510

Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T   +K+ +PL           D E  +  L   +  +G  +  + +    + + 
Sbjct: 511 EDADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELG 570

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271
           +E +  ++DI +L       +     L+  LF    +     ++    T  S+L +    
Sbjct: 571 KELEDCEKDIYRLVGHEFNIA-SPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASE 629

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 IL+  A +       +TL +    +GR+  +    G + TGR S      QN+P
Sbjct: 630 DPVPAKILDYRALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIP 688

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                        G     +R    A  G+ L+ AD + IE  +LA 
Sbjct: 689 IR------------------------GNEGRKIREAFQAEKGRVLISADYSQIELVILAH 724

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447
           ++ +   ++AF  G D++  T +  F   I  VS++ R I K +   + Y       A  
Sbjct: 725 LSKDQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASS 784

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------- 488
            +         ++ +       S F      E+      +                    
Sbjct: 785 LRIPRKRADEFIKAYFATYSGVSGFMANVCQEAEQRGYVETLMGRRRYLPAINSKNKVEK 844

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV--A 544
                 AV   + GTA ++VK A     + + +  + L       V +   I A      
Sbjct: 845 AGAERIAVNTPIQGTAADIVKLAMLEVDKALKK--QKLDASILLQVHDELIIEAAESERE 902

Query: 545 NVPRLVMRRHKRDVHIVLP 563
            V  LV  + +  + + +P
Sbjct: 903 KVMSLVKEKMEGVIKLSVP 921


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 95/553 (17%), Positives = 180/553 (32%), Gaps = 93/553 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITL--CAYAWDDEPVKLWDRTEQSAMPSD--- 56
             + +D ET S             +     L   + A +    +     + SA+  D   
Sbjct: 371 RHIAVDTETTS------------LDTFEAELAGISIAVETGKARFISFAQ-SALDRDKTV 417

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSL 109
             L   L + ++  +  N  ++ ++ KK  GI++    +  T + +             L
Sbjct: 418 EILKPLLENPSLPKIGQNLKYDMLVLKKY-GIELSPVAF-DTMLASYVLNPEEKHNLDDL 475

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L    +     +  GK     F         Y C  A+     +      ++ ++ 
Sbjct: 476 AAHHLGYRTTTFDELVGTGKTKQHIFEVDPEKLSDYACQDADLALQLE---GVFRKKLDG 532

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             EL        + E  L  +   +   G  ID   + K  E + +E + L E I     
Sbjct: 533 ETELLWLC---ENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKELELLTETIYAAAG 589

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASS 285
               +      L   LF +  +     ++      ++ +   + +  +A+DL+  R +  
Sbjct: 590 SAF-NIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYR-SLQ 647

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 ++ L + V+   GRL  T   +  + TGR S      QN+P             
Sbjct: 648 KLKSTYIDALPKMVNPLTGRLHTTFNQF-ITATGRLSSSNPNLQNIP------------- 693

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                   I  PLG     +R   I S     L+ AD + IE R+ A I+G+   ++AF 
Sbjct: 694 --------IRSPLG---KEIRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLLEAFR 742

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           N EDI+  T    F+T  D+++ + R   K +   + Y     G ++            +
Sbjct: 743 NREDIHTATAKVIFDT--DEITSDMRRKAKEVNFGVLYGIMPFGLSRRLNIPQKEAKAII 800

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
             +                                      S +  ++      A+   +
Sbjct: 801 DTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTNLKKAAERAAMNTPI 860

Query: 499 IGTACELVKKAWR 511
            GTA +++K A  
Sbjct: 861 QGTAADIIKCAMN 873


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/563 (18%), Positives = 187/563 (33%), Gaps = 100/563 (17%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +L ID ET S       L  + +     QA      + +           ++  +   L 
Sbjct: 345 ELAIDTETSSLDAHQTDLVGISLSTKIGQACYIPIGHKFKG-------CLKKETVIKKLK 397

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D++V  +  N  F+ I+  K  GI++ S             G      +    ++ 
Sbjct: 398 PLLEDKSVKKIGQNIKFDFIVLYKQ-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHL 456

Query: 119 SEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                  +E    GK  I  F    +D                   EY   D + T  L+
Sbjct: 457 QHKTISFKEIVGTGKKEIN-FSDVELDKAM----------------EYAAEDADITYRLY 499

Query: 175 K------RLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           K      +L  L++     E+ L  +   +   G +ID   +  L E   ++  KL++++
Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILNRLA 283
            K++      +     L   ++    I ++  +        + S +  LA K     +L 
Sbjct: 560 FKISKKEFNIA-SPKQLGEIIYNDLKIAVLKKTRKG-SFATNASVLEDLAFKGHEFPKLI 617

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L E ++ + +   T     A+ TGR +      QN+P +     
Sbjct: 618 LDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSED-- 675

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G  L+ AD   IE R+LA +A     
Sbjct: 676 ----------------------GKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            KAF+N EDI+  T ++ FN  I KV ++ R   K +   + Y     G AK        
Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHE 773

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               L  +         + D                     +      +  +++     A
Sbjct: 774 ADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAA 833

Query: 494 VKDKLIGTACELVKKAWRAKHQG 516
           +   + G+A E+++ A    ++ 
Sbjct: 834 INAPIQGSASEIMRLAMIRLNKK 856



 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 566 RRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNGY- 622
           R+  Y  ++ G  S+ N    +    R +  +   N  +Q  + +I+   M    K    
Sbjct: 800 RKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGSASEIMRLAMIRLNKKFES 859

Query: 623 ------DIVLTVHDEIVSETPDTPYFSVGTL 647
                  I+L +HDE++ E P     ++  +
Sbjct: 860 IKNNKSKILLQIHDELIFEVPVKEVKNITEI 890


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/542 (14%), Positives = 175/542 (32%), Gaps = 99/542 (18%)

Query: 32  LCAYAWDDEPVKL-WDRTEQSAMPSDL---LQYLRDETVMCVAHNSL----FERILFKKT 83
           L A+A     V L ++  +   +P D+    +YL       ++H +     F     K+ 
Sbjct: 336 LFAHASGYGRVSLCYEAEKIVTIPCDMDADFEYLT----GKLSHLAKSVKRFSMCGLKEY 391

Query: 84  L-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           L  +   +      +++A     P         +        ++E      + C  +  +
Sbjct: 392 LEWLPELTSENGFDAIVAAYLLNPLKNDYNAEDVAREHLNLLIDEKLDEGTKSCYEAYTA 451

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                     ++   +F  +                   + E  L      +   G +++
Sbjct: 452 YACVPVLEKKLEENGMFCLFN------------------EIEMPLVFTLYDMEQAGVKVE 493

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + + +  E +     +L+++I ++      +      L + LF    +     ++    
Sbjct: 494 GEELKRYGEELGARIVELEKEIYEMAGEEF-NINSPKQLGVILFEKLEMPHAKKTKTG-- 550

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA +  +         + KL     + L+  +  DGR+         + T
Sbjct: 551 YSTAADVLDKLAPEYPIVAKILEYRQLAKLKSTYADGLANYIGMDGRIHSKFN-QTITAT 609

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R   +   G   V
Sbjct: 610 GRISSTEPNLQNIP------------------------VRMELGRLIRKVFVPKEGCVFV 645

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA  +G++  I+A+    DI+  T ++ F+ P D+V+  QR   K +  
Sbjct: 646 DADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNF 705

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---- 489
            + Y     G ++            ++ + ++     TF D   +++      +      
Sbjct: 706 GIVYGISSFGLSQDLSISRKEAAQYIEHYFESYPGIKTFLDKCVSDAKEKGYAETLYGRR 765

Query: 490 -----------------PEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWK 522
                               A+   + GTA +++K A             K + +LQ+  
Sbjct: 766 RPMPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIHVNEELKKRNLKSRMILQVHD 825

Query: 523 DL 524
           +L
Sbjct: 826 EL 827



 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M +             ++L VHDE++ E  +T   
Sbjct: 778 QRSFGERVAMNAPIQGTAADIIKIAMIHVNEELKKRNLKSRMILQVHDELLIEADETELE 837

Query: 643 SVGTL 647
            V  +
Sbjct: 838 EVQQI 842


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113
               +++ ++       +S    ++  +  GI++    +  T + A      +S  +   
Sbjct: 359 EVFKEWVENDDQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +A ++  H+   +E       + KG+  + P +   + H+    L  +  +  +    E 
Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +L    + E  L L+   +   G ++D+D + ++ E +  + K+ +E I ++      
Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGTKLKEYEEKIHEIAGEPF- 530

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF   G+ +V  ++    T   +L          D IL           
Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590

Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L +    D  ++         ++TGR S      QN+P +                
Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633

Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S     +  AD + IE RVLA I+ ++  I+AF N  DI
Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T    F+   D+V+   R   K +   + Y     G ++         G  + ++ +
Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           + +    + +                       +  S +  ++      A+   + G+A 
Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805

Query: 504 ELVKKAW 510
           +++KKA 
Sbjct: 806 DIIKKAM 812



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M   
Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 860 L--ALDVPLKVD 869


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 130/377 (34%), Gaps = 57/377 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L    + E+ L  +   +   G R+D+  +  L   +A+E ++L+E++ +L      +
Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L   LF    +  +  ++ T K   S + +  L +   +         + KL  
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L   V    GRL        A+ TGR S      QN+P +               
Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI
Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           +  T +  F  P + V    R   K +   + Y   A    +            ++++ Q
Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEASAFIERYFQ 700

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
           +      + +    E                          +++     A    + GTA 
Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760

Query: 504 ELVKKAWRAKHQGVLQL 520
           +L+K A       + Q+
Sbjct: 761 DLMKLAMVKLFPRLRQM 777



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D
Sbjct: 702 FPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAAD 761

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           ++   M        + G  ++L VHDE++ E P      V  L  
Sbjct: 762 LMKLAMVKLFPRLRQMGARMLLQVHDELLLEAPQARAEEVAALAK 806


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 154/467 (32%), Gaps = 86/467 (18%)

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+P        +LA     PS+     +A  +    T+    +AL+A           
Sbjct: 363 GLDLPPSD--DPMLLAYLLD-PSNTTPEGVARRYGGEWTEDAAQRALLA----------- 408

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                       +   +     +E   +L   L    + E+ L  +   +   G R+D+ 
Sbjct: 409 ------------ERLQQNLLERLEGEEKL---LWLYREVEKPLSRVLAHMEATGVRLDVA 453

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            +  L   +  E K+L+E++ +L      +      L   LF    +  +  ++ T K  
Sbjct: 454 YLKALSLEVEAELKRLEEEVYRLAGHPF-NLNSRDQLERVLFDELKLPALGKTQKTGKRS 512

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318
            S + +  L +   +         + KL     + L   V    GRL        A+ TG
Sbjct: 513 TSAAVLEALREAHPIVEKILQHRELSKLKSTYIDPLPGLVHPRTGRLHTRFN-QTATATG 571

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P +                              +R   +A  G  LV 
Sbjct: 572 RLSSSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGFLLVA 607

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P++ V    R   K +   
Sbjct: 608 LDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAKTVNFG 667

Query: 439 LGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------- 475
           + Y   A    +            ++++ Q+      + +                    
Sbjct: 668 VLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEGGRQRGYVETLFGRRR 727

Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                 +    +++     A    + GTA +L+K A       + + 
Sbjct: 728 YVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLKET 774



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555
           + G   E V    R   +  +            + QE        VA + R      + +
Sbjct: 645 MFGVPLEAVDPRMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 703

Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +   L   R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   
Sbjct: 704 AWIEKTLEGGRQRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 763

Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           M        + G  ++L VHDE++ E P     +V  L   +M
Sbjct: 764 MVKLFPRLKETGARMLLQVHDELLLEAPKDRAEAVAALAKEVM 806


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/513 (18%), Positives = 172/513 (33%), Gaps = 87/513 (16%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            + D T      +DL++ L +  V     NS                        + A+ 
Sbjct: 346 AVQDTTVYPLEDADLVRLLDNADVTLDVFNSA----------------------PLYAKA 383

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                   +       + +L      K  I+        +  + CT  ++  A +L   +
Sbjct: 384 MAAGGWGSSIVWDGKLAAYLLDASASKYQISELIPAYKAAAAFTCT--DYPDAGRLADLF 441

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   E T      L   ++ E  L  +   +   G  +D D + +    + +E +++  
Sbjct: 442 ARMKAEITACGEDALY--NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLT 499

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I   T     +      L   LF   G+     ++    T    L       L +D++ 
Sbjct: 500 RIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREYPLVEDVLQ 559

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R A        +  L + +  DGR+  T     A RTGR S      QN+P +      
Sbjct: 560 YR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRT----- 612

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R+  +A  G  LV AD + IE R+LA I G++   
Sbjct: 613 -------------------ELGSQLRAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQ 653

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
           +AF NGEDI+ +T AK +  P  +V+   R+  K +   + Y  GA    K         
Sbjct: 654 QAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKDIGVTVKEA 713

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              L+ +     S S + D   A++                      +  ++      A 
Sbjct: 714 DAFLKNYLAAFPSVSGYMDKTIADAKANGYVSTLFGRRRTLPELASTNFNVRASGERMAR 773

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
              + GTA +++K A        +++WK L + 
Sbjct: 774 NTPIQGTAADVIKLAM-------VRVWKRLRDE 799


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113
               +++ ++       +S    ++  +  GI++    +  T + A      +S  +   
Sbjct: 359 EVFKEWVENDDQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +A ++  H+   +E       + KG+  + P +   + H+    L  +  +  +    E 
Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +L    + E  L L+   +   G ++D+D + ++ E +  + K+ +E I ++      
Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF- 530

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF   G+ +V  ++    T   +L          D IL           
Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590

Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L +    D  ++         ++TGR S      QN+P +                
Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633

Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S     +  AD + IE RVLA I+ ++  I+AF N  DI
Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T    F+   D+V+   R   K +   + Y     G ++         G  + ++ +
Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           + +    + +                       +  S +  ++      A+   + G+A 
Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805

Query: 504 ELVKKAW 510
           +++KKA 
Sbjct: 806 DIIKKAM 812



 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M   
Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 860 L--ALDVPLKVD 869


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 68/401 (16%)

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             +++   E  + L   ++ E  L  +  ++   G R D + + +  + + ++ + L + 
Sbjct: 439 AENLKLQLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEALTKQ 498

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I  L  G    +     L   L+   G+     ++    +      + +LA    + RL 
Sbjct: 499 IYDLAGGEFNIA-SPKQLGEVLYEKLGLPAKKKTKSGYSTNAE--VLEELADKHPIVRLV 555

Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                + KL     + L + V SDGR+    +    +RTGR S      QN+P ++    
Sbjct: 556 LEYRTLTKLSSTYVDGLLKEVESDGRVHSVFK-QTETRTGRISSTEPNMQNIPVRK---- 610

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  G  L+ AD + IE RVLA + G++  
Sbjct: 611 --------------------EIGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENM 650

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454
            K F  G DI+  T ++ F  P D V  E R+  K +   + Y  GA    K      + 
Sbjct: 651 RKTFEEGTDIHAMTASQVFGIPADMVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVAE 710

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               ++ +  N    S F D                       +  + +  MQ      A
Sbjct: 711 AKQYIKNYLDNFPKVSQFMDKTVEDGIKNGYVTTIFGRRRYIPELSATNKVMQAFGKRAA 770

Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
           +   + G A +++K A    +Q           +LQ+  +L
Sbjct: 771 MNAPIQGAAADIIKIAMVKVYQRLKEEKLDARLILQVHDEL 811



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             +  + +   +    +  Y   + G   Y+   ++     + +G +   N  +Q  + D
Sbjct: 722 FPKVSQFMDKTVEDGIKNGYVTTIFGRRRYIPELSATNKVMQAFGKRAAMNAPIQGAAAD 781

Query: 609 ILCEGMKNA------TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651
           I+   M          K    ++L VHDE++ E  P+    +   L   M
Sbjct: 782 IIKIAMVKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEEM 831


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/555 (17%), Positives = 187/555 (33%), Gaps = 87/555 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           K+ +D ET S       L   G+   AE A     ++A               ++   L 
Sbjct: 373 KIAVDTETTSLDTFEAEL--AGISISAEPAKARFISFAGTG-------LDRGRSI-EILR 422

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-NACLALN 117
             L +  +     N  ++ ++ K   G+++    +  T + +           +   AL+
Sbjct: 423 PLLENPAIPKTGQNLKYDILVLKNY-GLELGPVGF-DTMLASYVLDPDGKHNLDDMAALH 480

Query: 118 FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                TK +E    GK  +  +         Y C  A+     +       R++EA   L
Sbjct: 481 LRLKTTKYDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLE---GAFTRNLEAEPRL 537

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +        E  L  +   +  +G  ID   + +    +  + + L E I         
Sbjct: 538 MELC---QTIEFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHAAAGTDF- 593

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L   LF + G+     ++      ++ +   + +  +  DL+L R +      
Sbjct: 594 NIDSPKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYR-SLQKLKT 652

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L + V+   GR+  +   +  + TGR S      QN+P                 
Sbjct: 653 TYIDALPKMVNPRTGRVHTSFNQH-VTATGRLSSSNPNLQNIP----------------- 694

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
               I  PLG     +R   I +     L+ AD + IE R+ A I+G+   I+AF NG D
Sbjct: 695 ----IRTPLG---REIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNGLD 747

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T    F+T  + ++ + R   K +   + Y     G +K      +     +  + 
Sbjct: 748 IHAETARVIFDT--EDITADMRRKAKEVNFGVLYGIQPFGLSKRLNIPRNEAREIIDTYR 805

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +      +  +                          S +  +Q      A+   + GTA
Sbjct: 806 EKYPGLFSSLEGVIEEGRKNGFVTTLLGRRRYLRDLTSRNSNVQKAAERAAMNTPIQGTA 865

Query: 503 CELVKKAWRAKHQGV 517
            +++K A     + +
Sbjct: 866 ADIIKCAMNLCSRRI 880


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/507 (16%), Positives = 177/507 (34%), Gaps = 89/507 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L     +E +  V H+S    ++  K    +I +K     + +A     PS        L
Sbjct: 378 LKNLFENEKIKKVCHDSKKVYVVLNKH---NITAKNIAFDTKIAAYLLQPSKSDYMLKDL 434

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                L  ++E                 YD  + N     +   E  ++D+     + + 
Sbjct: 435 IEEMLLLSLKE-----------------YDNIKINETYYIKDIYEKLEKDI-KESNMEEL 476

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L  +   E  L  +  ++   G+R+D + + ++ E   +E + L+++I +L D    + +
Sbjct: 477 LYTV---ELPLVEVLASMECAGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEF-NIK 532

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L          + I+     +      + 
Sbjct: 533 SPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKIIEYRQITKLDSTYVE 592

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L   +  DG++  +      + TGR S      QN+P +                    
Sbjct: 593 GLKNVIDGDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKH------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   + +N + ++  AD + IE R+L+ IA ++  I AF + +DI+  T
Sbjct: 633 -----EMGREIRKVFVPNNNESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTIT 687

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKS 468
            ++ F  PID+V+   R+  K +   + Y  GA    K            +  +     +
Sbjct: 688 ASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPN 747

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + D                       + +S +  ++      A+   + G+A +++K
Sbjct: 748 VKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQGSAADIIK 807

Query: 508 KAWRA----------KHQGVLQLWKDL 524
            A             K   +LQ+  +L
Sbjct: 808 LAMVEVYNELKNRNLKSTLILQVHDEL 834


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 143/413 (34%), Gaps = 79/413 (19%)

Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              +     +L + L+P           +  E  L  +  ++ + G+ +D D + +L + 
Sbjct: 444 AAEEAHLVWQLKEALLPQLGQAGLLPLFTTIEMPLIEVLASMEEVGFSVDTDQLSELGKE 503

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           +  +  +L+  I  L      +      L   LF    +  +  ++    + +    + +
Sbjct: 504 LESQLSRLESRIFALAGEHF-NINSPKQLAEVLFQRLKLTPLKRTKTGYSTNVE--VLQR 560

Query: 273 LAKDLILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           LA    L     +  ++ KL +      L  A  + GR+  +      + TGR S     
Sbjct: 561 LAVTHELPAEVLNYRSLAKLKSTYVDVLLRLAERTSGRIHTSFN-QTVTATGRLSSSEPN 619

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                              +R   +AS G +L+ AD + IE 
Sbjct: 620 LQNIPVRT------------------------EVGRRIRQAFVASEGHRLLSADYSQIEL 655

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-- 444
           R+LA ++ +   I AF  G D++ +T A+ F    + V+ E R   KV+   + Y     
Sbjct: 656 RILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRAKVINFGIVYGMSPF 715

Query: 445 --AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------- 489
             A   +       L + ++ Q       F D    E+  L     +             
Sbjct: 716 GLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICEARELGFVSTFWGRRRAIPELKSS 775

Query: 490 --------PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
                      AV   + G+A +L+K A  A  +           +LQ+  +L
Sbjct: 776 DQTVRQLGERLAVNTPIQGSAADLIKVAMIAISRRLRSEQLETRMILQIHDEL 828



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 594 GGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           G +L  N  +Q  + D++   M        + +    ++L +HDE++ E P+        
Sbjct: 783 GERLAVNTPIQGSAADLIKVAMIAISRRLRSEQLETRMILQIHDELLFEVPEVEL----D 838

Query: 647 LCSLMTKNP-SWAKGL--PLKAE 666
           +   M      WA  L  PLK +
Sbjct: 839 VARRMATEEMEWAATLSVPLKVD 861


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 119/657 (18%), Positives = 206/657 (31%), Gaps = 165/657 (25%)

Query: 49  EQSAMPSDL-----LQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           +   +P  L     LQ L              N+ ++R++  +     +P    +  ++L
Sbjct: 435 QGDPIPDQLPLETVLQALAPWLASGEHPKALQNAKYDRLILLRH---GLPLAGVVMDTLL 491

Query: 100 ARTN-GLPSSLKNACLALN--------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
           A       +      +A          FS+ + K +EGKA    F +  ++S        
Sbjct: 492 ADYLRDAAAKHGLDAMAQRDYGISPTLFSDLVGKAKEGKASN--FSEVPLESAA------ 543

Query: 151 NHVQAWQLFGEYCKRDVEATREL-------FKRLIP-----LSDGERDLWLLDQTINDRG 198
                     +YC  DV  TR+L        + L P     LS  E  L  +   +   G
Sbjct: 544 ----------QYCGMDVHLTRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVLAVMEATG 593

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            RID+  +  L   I    ++L+    +  +     +     L   LF   G+D      
Sbjct: 594 IRIDVPYLEALSCEIGTNLERLEASAKEAAEIDFNLA-SPKQLGDLLFNTLGLDRKKSRR 652

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFY 312
                    + + +L  D  +  L      + KL     + L + V +  GR+       
Sbjct: 653 TKTGYSTDATVLEKLEHDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-Q 711

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P +                           S  +R   +  +
Sbjct: 712 AVTATGRLSSSNPNLQNIPVRT------------------------EYSRRIRKAFLPQD 747

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  L+ AD + IE R+L  ++GE+   +A+ +G+D++  T     +   D+VS ++R +G
Sbjct: 748 GWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DEVSPDERRLG 805

Query: 433 KVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           K +   + Y  GA+ F        S     L ++ Q       F + +            
Sbjct: 806 KTINFGVIYGMGAQRFARETGVSQSEAKDFLSKYKQRYPKVFAFLELQ------------ 853

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+    + T                                    +  RR  +  R
Sbjct: 854 -ERLALSQGYVET-----------------------------------ILGRRRPFHFDR 877

Query: 549 LVMRRHKRD--VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + R      + I L  +RR                 +Q +R            +Q  S
Sbjct: 878 NGLGRLNGMDPLEINLEVARR-------------GGMEAQQLRAAANAP------IQGSS 918

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656
            DI+   M               ++L VHDE+V ET       V  L    M     
Sbjct: 919 ADIIKLAMVQLQAKLESKNLPARLLLQVHDELVLETEPEALAVVEELVVQTMKNAID 975


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113
               +++ ++       +S    ++  +  GI++    +  T + A      +S  +   
Sbjct: 359 EVFKEWVENDEQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +A ++  H+   +E       + KG+  + P +   + H+    L  +  +  +    E 
Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +L    + E  L L+   +   G ++D+D + ++ E +  + K+ +E I ++      
Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF- 530

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF   G+ +V  ++    T   +L          D IL           
Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590

Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L +    D  ++         ++TGR S      QN+P +                
Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633

Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S     +  AD + IE RVLA I+ ++  I+AF N  DI
Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T    F+   D+V+   R   K +   + Y     G ++         G  + ++ +
Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           + +    + +                       +  S +  ++      A+   + G+A 
Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805

Query: 504 ELVKKAW 510
           +++KKA 
Sbjct: 806 DIIKKAM 812



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M   
Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 860 L--ALDVPLKVD 869


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/497 (17%), Positives = 175/497 (35%), Gaps = 73/497 (14%)

Query: 53  MPSDLLQYLRDETVMCVAHNS-----LFE---RILFKKTLGIDIPSKRWICTSVLARTNG 104
           +P D+   +  E     A N      LF+    ++  +  GI++    +  T + A    
Sbjct: 350 IPKDI--AVESEVFKEWAENDEQKKWLFDSKRAVVALRWQGIELKGAEF-DTLLAAYIIN 406

Query: 105 LPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             +S  +   +A ++  H+   +E       + KG+  + P +   + H+    L  +  
Sbjct: 407 PGNSYDDVASVAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLVRKALAIQSL 461

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +  +    E   +L    + E  L L+   +   G ++D+D + ++ E +  + K+ +E 
Sbjct: 462 REKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEK 521

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I ++      +      L + LF   G+ +V  ++    T   +L          D IL 
Sbjct: 522 IHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQ 580

Query: 281 RLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      +  L +    D  ++         ++TGR S      QN+P +      
Sbjct: 581 YRQIGKLQSTYIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR------ 633

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   + S     +  AD + IE RVLA I+ +   
Sbjct: 634 ------------------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNL 675

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF N  DI+  T    F+   D+V+   R   K +   + Y     G ++        
Sbjct: 676 IEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 735

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
            G  + Q+ ++ +    + +                       +  S +  ++      A
Sbjct: 736 AGAFIDQYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTA 795

Query: 494 VKDKLIGTACELVKKAW 510
           +   + G+A +++KKA 
Sbjct: 796 MNTPIQGSAADIIKKAM 812



 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M   
Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPQEEIEILEKLVPEVMEHA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 860 L--ALDVPLKVD 869


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/545 (17%), Positives = 180/545 (33%), Gaps = 102/545 (18%)

Query: 34  AYAWD---------DEPVKLWDRTEQSAM---PSDLLQY------LRDETVMCVAHNSLF 75
            YA           D  V     T  S +    + LLQ       L D+ V  V  ++  
Sbjct: 347 GYAIYLENLSKNYHDSEVVAVAWTNGSEIFTGDARLLQADLFKAWLSDDQVTKVVFDAKR 406

Query: 76  ERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEEGKALIA 133
            +++    LGID      +   ++     +   +S   A +A  F       +E     A
Sbjct: 407 TKVML-DYLGID--FAGVVDDVLIGSYLLHARDNSNDLAEVAREFDMDDLSYDE-----A 458

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------G 183
            + KG+    P         +  +   E+  R V     L + + P  +           
Sbjct: 459 IYGKGAKRGVP---------EEAETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKI 509

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L L+   +   G  +D   ++ +Q    +    L+ DI K       +      L +
Sbjct: 510 ELPLALVLANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGHEF-NVNSPKQLGV 568

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF   G+ ++  ++    T + +L          DLILN    +      +  L E + 
Sbjct: 569 ILFEEMGLPVIKKTKTGYSTAQDVLEKLAGQAPIIDLILNYRQLNKLQSTYVEGLQEFIH 628

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DG++    Q    + TGR S      QN+P +                           
Sbjct: 629 EDGKIHSRFQ-QTLTSTGRLSSADPNLQNIPIRS------------------------EE 663

Query: 361 SDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +R   + S     +  +D + IE RVLA I+G+    +AF N EDI+ +T  K +N 
Sbjct: 664 GRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNV 723

Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE-- 473
           P ++V+   R   K +   + Y     G ++            +  + +N      +   
Sbjct: 724 PKEEVTSNMRRNAKAVNFGIVYGISDYGLSQNLNISRPEAKNFIDTYLENYPGVQAYMKD 783

Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                   ++ +  ++      A+   + GTA +++K A     
Sbjct: 784 VVEKAKEDGYVETLFNRRRYLPDLKAKNFNVRSFAERNAMNTPIQGTAADIIKIAMVKMD 843

Query: 515 QGVLQ 519
           + + +
Sbjct: 844 EALKE 848


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 172/508 (33%), Gaps = 72/508 (14%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           E+ L    L      + +    V        S L   C     + +L +  +    I   
Sbjct: 346 EQGLILAFLASGCKKRSFDAKPVYRYAFAADSGLTGLCFDGAIAAYLHEATKASYEIPAL 405

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
           C+        D      + A     +     +EA          + + E  L  +  ++ 
Sbjct: 406 CRSFHLPYEEDMGDTADIAALPGLCDALANKLEAE----GLTRLMEEIELPLVEVLASME 461

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  +D D V +  + ++ E ++L+E+I  L       +     L   LF    I    
Sbjct: 462 HTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLAGKQFNIA-SPKQLGQVLFEDLEIPHPQ 520

Query: 256 MSEGTLKSILSHS--NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGT 308
             + T     S +   + +L     +  L      + KLN+     L + V+ DGR+   
Sbjct: 521 GKKKTKTGSFSTNAEVLEKLRGAYPIVSLILRYRQLTKLNSTYVAGLLKTVAPDGRIHTC 580

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            +    +RTGR S      QN+P +                              +R   
Sbjct: 581 FK-QTETRTGRISSTEPNMQNIPVRT------------------------ELGKEMRKFF 615

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G+ L+ AD + IE R+LA +  +    +AF +G DI+ +T A+ F  P + V+ + 
Sbjct: 616 VAPRGRILLDADYSQIELRILANLCEDANMQQAFLSGADIHASTAAQVFGVPREAVTPQM 675

Query: 429 RAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------- 475
           R+  K +   + Y  GA    +            ++++ +N      F            
Sbjct: 676 RSAAKAVNFGIIYGIGAYSLSQDIGVSVREADRYIKRYLENFPRVEQFMTRIVEDAERTG 735

Query: 476 ------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------- 516
                        + +SH+   Q      A+   + GTA +++K A    ++        
Sbjct: 736 FVSTLFGRRREVPELKSHNKIQQAAGRRIAMNTPIQGTAADIIKIAMIRVYRRLAREQLD 795

Query: 517 ---VLQLWKDLTEGFACVVQEGGSISAR 541
              +LQ+  +L    A    +  ++  R
Sbjct: 796 ARLILQVHDELIVEAAVQDADRAAVILR 823


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 138/408 (33%), Gaps = 65/408 (15%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E+ L  +   +   G R+D+  +  L   +  E ++L+E++ +L      +  
Sbjct: 425 LWLYEEVEKPLSRVLAHMEATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLN 483

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILK 291
               L   LF   G+  +  +E T K   S + +  L +     D IL     S      
Sbjct: 484 SRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTY 543

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L   V     RL        A+ TGR S      QN+P +                 
Sbjct: 544 IDPLPALVHPKTNRLHTRFN-QTATATGRLSSSDPNLQNIPVRT---------------- 586

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +A  G KLVV D + IE RVLA ++G++  I+ F  G+DI+ 
Sbjct: 587 --------PLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHT 638

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466
            T +  F  P + V    R   K +   + Y   A                 ++++ Q+ 
Sbjct: 639 QTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERYFQSY 698

Query: 467 KSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACEL 505
                + +   AE                          +++     A    + GTA +L
Sbjct: 699 PKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAADL 758

Query: 506 VKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +K A               +LQ+  +L         E  +  A+R   
Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTME 806



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 698 YPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAAD 757

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           ++   M        + G  ++L VHDE+V E P      V  
Sbjct: 758 LMKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQ 799


>gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 223

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 114/215 (53%), Gaps = 5/215 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++ EPVK+WD T+   MP DL  YL D
Sbjct: 10  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K  L ID+P  R   T V A  +GLP +L + C   N +   
Sbjct: 69  PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
           TK +EGKALI  FCK    +S     T   H + W  F  Y   D+ A RE+++ L    
Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           ++  E  LW LDQ IN RG  +D++L       + 
Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/685 (17%), Positives = 217/685 (31%), Gaps = 153/685 (22%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAY-------AWDDEPVKLWDRTEQSAM 53
            +D ET    P    L  +GV        +   AY       + D +PV+L        +
Sbjct: 388 ALDTETTDLNPFKAELVGIGV---CWGEELDALAYIPLGHNGSADSQPVQLP----LETV 440

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            + L  +L  E       N+ F+R++  +     +     +  ++LA        L++A 
Sbjct: 441 VTALAPWLGSEDHPKALQNAKFDRLILMRH---GLALDGVVIDTLLADY------LRDAA 491

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                 E + + E G    A            D          +   +YC  DV  TR L
Sbjct: 492 AKHGL-ELMAEREFGFQPTAYSDLVGKKQTFADV-------PLEAASQYCAMDVHVTRRL 543

Query: 174 F------------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                        + L  L   E+ L  +   +   G RID+  + +L   +    ++L+
Sbjct: 544 ALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMGTTLERLE 603

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            +  +        +     L   LF   G+D               + + +L  D  +  
Sbjct: 604 TEAKEAAGVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLGDDHPVVP 662

Query: 282 LASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L      + KL     + L + V +  GR+         + TGR S      QN+P +  
Sbjct: 663 LVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVRT- 720

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                    S  +R   +   G  L+ AD + IE R+L  ++GE
Sbjct: 721 -----------------------EYSRRIRKAFLPQAGWTLLSADYSQIELRILTHLSGE 757

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +   +A+ +G+D++  T     +   D+VS ++R +GK +   + Y  GA+         
Sbjct: 758 EVLQEAYRSGDDVHALTARLLLDK--DEVSADERRLGKTINFGVIYGMGAQ--------- 806

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                               FA +  +  +  +     ++ ++ 
Sbjct: 807 -----------------------------------RFARETGVSQSEAKDFLSKYKQRYP 831

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYSDV 573
            V    +               +  RR  +  R  + R   K  + I L  +RR      
Sbjct: 832 KVFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKEPLEIDLDVARR------ 885

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYD--IVLT 627
                      +Q +R            +Q  S DI+   M          G    ++L 
Sbjct: 886 -------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAALTSQGLPARLLLQ 932

Query: 628 VHDEIVSET-PDTPYFSVGTLCSLM 651
           VHDE+V E  PD    +   +   M
Sbjct: 933 VHDELVLEVEPDALETTRDMVVRTM 957


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113
               +++ ++       +S    ++  +  GI++    +  T + A      +S  +   
Sbjct: 359 EVFKEWVENDEQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +A ++  H+   +E       + KG+  + P +   + H+    L  +  +  +    E 
Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +L    + E  L L+   +   G ++D+D + ++ E +  + K+ +E I ++      
Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF- 530

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF   G+ +V  ++    T   +L          D IL           
Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590

Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L +    D  ++         ++TGR S      QN+P +                
Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633

Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S     +  AD + IE RVLA I+ ++  I+AF N  DI
Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T    F+   D+V+   R   K +   + Y     G ++         G  + ++ +
Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           + +    + +                       +  S +  ++      A+   + G+A 
Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805

Query: 504 ELVKKAW 510
           +++KKA 
Sbjct: 806 DIIKKAM 812



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M   
Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 860 L--ALDVPLKVD 869


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 126/368 (34%), Gaps = 57/368 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + ER +  +   +   G R+D   +    E +A++   L+ ++ +L      +     
Sbjct: 466 YEEIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAGNPNLNLNSRD 525

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            L   LF    +     +  T K   + S +  L     +  L      + KL     + 
Sbjct: 526 QLAELLFEKLELQAGRKT-STGKRSTAVSALEPLKDAHPVVPLILEYRELAKLKSTYLDP 584

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L   ++   GRL  T     A+ TGR S      QN+P +                    
Sbjct: 585 LPRLINPHTGRLHTTFN-QTATATGRLSSANPNLQNIPVRT------------------- 624

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +A  G  L+VAD + IE R+LA I GE+  ++ F  GEDI+  T 
Sbjct: 625 -----AVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDIHRRTA 679

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST 469
           A+ F  P + V+ E R + KV+   + Y       A+      +     ++ + +     
Sbjct: 680 AQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRLARELSIPYAEADAFIRSYFEGYPKV 739

Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508
             + D   A +                      +   ++     A    + GT  ++VK 
Sbjct: 740 RAYIDETLAFARDKGYVETLFGRRRPIPDIRSSNRNAREYAERTAYNMPIQGTQADIVKL 799

Query: 509 AWRAKHQG 516
           A       
Sbjct: 800 AMVRLLPR 807


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/626 (17%), Positives = 196/626 (31%), Gaps = 132/626 (21%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             +   L   L       V  N+ F+R++FK      I     +  ++LA     P    
Sbjct: 428 EQVLDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPE--- 481

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               +   SE   +  EG   +     G              V       EYC  D  AT
Sbjct: 482 ---KSHKLSELCEQYLEGITSLDYKDLGIGKKQTIADLDIETV------AEYCGMDAYAT 532

Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L             L + E+ L  +   + D G  ID + + KL + + Q    
Sbjct: 533 FLLVEPLKNELKTLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLS 592

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+E+  +       +      L   LF    ++     +        H+ + +L  D  +
Sbjct: 593 LEENAYQAAGEKF-NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPI 651

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                    + KL     + L E V   D R+         + TGR S      QN+P +
Sbjct: 652 IDYILEYRTLSKLKSTYIDALPELVDKIDQRIHTNFN-QSVTATGRLSSSNPNLQNIPIR 710

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                      S  +R   I      LV AD + IE R+LA ++
Sbjct: 711 T------------------------EFSRQIRQAFIPQQDWLLVSADYSQIELRILAHLS 746

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            E   + A+ N +D++  T    F+   ++++ ++R +GK +   + Y  G++     A 
Sbjct: 747 QEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQR---FAR 801

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+   +  + +      + + +   +   M+ +         ++G             
Sbjct: 802 EAGVSAVEGKEFI--NKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------------ 847

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                                             R        ++        R    D 
Sbjct: 848 ----------------------------------RRYFNFFDDNL-------YRFRGHDP 866

Query: 574 KG-DCSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVL 626
           +  D + +N     SQL+R            +Q  S DI+   M    +  + Y   ++L
Sbjct: 867 QNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLL 920

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLM 651
            VHDE+V E P   +  +   +   M
Sbjct: 921 QVHDELVFEIPHQEWEELEDKIKETM 946


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/499 (18%), Positives = 175/499 (35%), Gaps = 81/499 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  YL DETV  V  N  ++    K  L   I  K +  T +L+ +  L + +    L L
Sbjct: 399 LKPYLEDETVKKVGQNIKYD---LKIFLKYGIELKSFEDTMLLSYS--LDAGVNRHNLDL 453

Query: 117 NFSEHLTKM--------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
               HL             GK+ +        ++  Y C  A+  ++ + LF +   +  
Sbjct: 454 LAKTHLDHDNIKFKDVVGTGKSEVTFDEVLIDNAYRYACEDADVTLKLYNLFKDRIVK-- 511

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   ++++ L      E  L  +   + + G +ID  ++ KL    + + K L++ I KL
Sbjct: 512 EKCFQIYETL------EIPLVDVLARMENNGIKIDQVILKKLSNSFSADLKTLEKKIYKL 565

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA------KDLILNR 281
           +      +  T  L   L+    I     ++       + + +  LA        L+L  
Sbjct: 566 SGEEFNIA-STKQLGDILYEKLKISGTKKTKKG-NFATNVNVLEDLASKGNEFPKLVLEW 623

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       ++L E +  +  R+  +     A+ TGR +      QN+P + +     
Sbjct: 624 RQKSKLKNTYTDSLPEYIDKNTKRIHTSF-LLAATSTGRLASADPNLQNIPIKSK----- 677

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +RS  ++  G  ++ AD + IE RVLA +A      K
Sbjct: 678 -------------------EGKLIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKELKK 718

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF N EDI+  T ++ F   I K++++ R   K +   + Y     G AK          
Sbjct: 719 AFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLAKQISVSNPEAE 778

Query: 457 LDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVK 495
             L  + +       +                       +      +  ++      A+ 
Sbjct: 779 QFLFSYFKKFPEIRDYMQETLEFCRKNGFVQTMFNRKCHFPNINDKNHTLKSFQERAAIN 838

Query: 496 DKLIGTACELVKKAWRAKH 514
             + G A ++++ A     
Sbjct: 839 APIQGAAADIIRFAMINID 857


>gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 921

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/605 (16%), Positives = 199/605 (32%), Gaps = 117/605 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53
             L +D ET SP P       A AE     L   ++ ++      V +       +  + 
Sbjct: 344 RVLSVDTETTSPNP-------AMAE-----LLGISFSNQEKTGFYVSVKNSASLFQDKSF 391

Query: 54  -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
              ++ ++L       V  V  N  ++ I+ +               ++LA     P   
Sbjct: 392 SLEEIREHLGPVLSSQVPKVGQNIKYDLIVLENH---GFILNNIQFDTMLASYVIQPEGR 448

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           ++    L       K       I             + T  +     +   EY   D + 
Sbjct: 449 RHNMDVL------AKDLLNYDTITYDDLVGTGKKKKELTDIDP----EQVAEYAAEDADI 498

Query: 170 TRELFKRLI---------PLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L++            P+    E  L  +   +   G  +D+    +L     +E + 
Sbjct: 499 TFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 558

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+ +I K        +  T  L+  LF    +  V  ++        H  + +L  +  +
Sbjct: 559 LESEIHKQAGRSFNIA-STKELQKILFDDLKLKTVKKTQ--TGYSTDHEVLEELLGEHPI 615

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                      KL     + L + V+   GR+  +     A+ TGR S      QN+P +
Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIR 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392
           +R                            +R    + S+  +++  D + IE R++A I
Sbjct: 675 DR------------------------EGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           + +   ++A+ +G DI++ T A  +  P  +V+ E R   KV+  ++ Y     G ++  
Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSRNL 770

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487
           +         ++++        ++ D                          S H   ++
Sbjct: 771 RIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRLIVDINSTHKSAKE 830

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGS 537
                A+   + GT+ +++K A    H+ +          LQ+  +L        +E   
Sbjct: 831 AAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKEKEEFK 890

Query: 538 ISARR 542
           IS ++
Sbjct: 891 ISMKK 895


>gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 921

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/605 (16%), Positives = 199/605 (32%), Gaps = 117/605 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53
             L +D ET SP P       A AE     L   ++ ++      V +       +  + 
Sbjct: 344 RVLSVDTETTSPNP-------AMAE-----LLGISFSNQEKTGFYVSVKNSASLFQDKSF 391

Query: 54  -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
              ++ ++L       V  V  N  ++ I+ +               ++LA     P   
Sbjct: 392 SLEEIREHLGPVLSSQVPKVGQNIKYDLIVLENH---GFILNNIQFDTMLASYVIQPEGR 448

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           ++    L       K       I             + T  +     +   EY   D + 
Sbjct: 449 RHNMDVL------AKDLLNYDTITYDDLVGTGKKKKELTDIDP----EQVAEYAAEDADI 498

Query: 170 TRELFKRLI---------PLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L++            P+    E  L  +   +   G  +D+    +L     +E + 
Sbjct: 499 TFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 558

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+ +I +        +  T  L+  LF    +  V  ++        H  + +L  +  +
Sbjct: 559 LESEIHRQAGRSFNIA-STKELQKILFDDLKLKTVKKTQ--TGYSTDHEVLEELLGEHPI 615

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                      KL     + L + V+   GR+  +     A+ TGR S      QN+P +
Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIR 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392
           +R                            +R    + S+  +++  D + IE R++A I
Sbjct: 675 DR------------------------EGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           + +   ++A+ +G DI++ T A  +  P  +V+ E R   KV+  ++ Y     G ++  
Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSRNL 770

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487
           +         ++++        ++ D                          S H   ++
Sbjct: 771 RIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPIVDINSTHKSAKE 830

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGS 537
                A+   + GT+ +++K A    H+ +          LQ+  +L        +E   
Sbjct: 831 AAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKEKEEFK 890

Query: 538 ISARR 542
           IS ++
Sbjct: 891 ISMKK 895


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 111/626 (17%), Positives = 197/626 (31%), Gaps = 132/626 (21%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             +   L   L       V  N+ F+R++FK      I     +  ++LA     P    
Sbjct: 428 EQVFDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPE--- 481

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               +   SE   +  EG   +     G              V       EYC  D  AT
Sbjct: 482 ---KSHKLSELCEQYLEGITSLDYKDLGIGKKQTIADLDIETV------AEYCGMDAYAT 532

Query: 171 ----RELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                 L   L PLS       + E+ L  +   + D G  ID + + KL + + Q    
Sbjct: 533 FLLVEPLKNELKPLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLS 592

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+E+  +       +      L   LF    ++     +        H+ + +L  D  +
Sbjct: 593 LEENAYQAAGEKF-NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPI 651

Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                    + KL     + L E V   D R+         + TGR S      QN+P +
Sbjct: 652 IDYILEYRTLSKLKSTYIDALPELVDKIDQRIHTNFN-QSVTATGRLSSSNPNLQNIPIR 710

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                      S  +R   I      LV AD + IE R+LA ++
Sbjct: 711 T------------------------EFSRRIRQAFIPQQDWLLVSADYSQIELRILAHLS 746

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            E   + A+ N +D++  T    F+   ++++ ++R +GK +   + Y  G++     A 
Sbjct: 747 QEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQR---FAR 801

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+   +  + +      + + +   +   M+ +         ++G             
Sbjct: 802 EAGVSAVEGKEFI--NKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------------ 847

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                                             R        ++        R    D 
Sbjct: 848 ----------------------------------RRYFNFFDDNL-------YRFRGHDP 866

Query: 574 KG-DCSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVL 626
           +  D + +N     SQL+R            +Q  S DI+   M    +  + Y   ++L
Sbjct: 867 QNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLL 920

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLM 651
            VHDE+V E P   +  +   +   M
Sbjct: 921 QVHDELVFEIPHQEWEELEDKIKETM 946


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/581 (16%), Positives = 197/581 (33%), Gaps = 83/581 (14%)

Query: 2   SKLFIDIETRSPQ--PLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
                D+ET S        VG V+   + +      + + + P +L    +   +   L 
Sbjct: 332 KTFVFDLETTSLDYMNATIVGWVFLVDKNSFYVPVGHDYLNAPKQL----DFKDVLDQLK 387

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALN 117
             L D ++  V  N  ++  +      ID+       T V +     + +      L+  
Sbjct: 388 LILEDVSIGKVGQNLKYDAHILANY-QIDLQGISD-DTMVKSYCLNSVATRHNIDDLSEY 445

Query: 118 FSEHL-----TKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATR 171
           +  H          +GK  I  F +  +++  PY C    +V    L       ++    
Sbjct: 446 YLNHKTIHFDDIAGKGKKQIT-FNQVDLETAFPYAC---EYVIVTDLLNHVLDEEIVQYP 501

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L K      + E  L  +   +   G  +D++ +   Q  I Q+ K +   + +L   I
Sbjct: 502 KLVKL---YQNLELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMKDIQAQVFELAGDI 558

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----DLILNRLASSGS 287
                    ++  LF   G+ L  + +    +  ++    +L      DLIL+    +  
Sbjct: 559 FNLE-SPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLLDHPLVDLILSYRTLTKL 617

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               L  L + +  +     T      + TGR S      QN+P + +            
Sbjct: 618 NSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNIPIRSK------------ 665

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A     ++ AD + IE R++A ++ +   + AF + +D
Sbjct: 666 ------------QGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKD 713

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFS 463
           ++  T +  FN PI++V+K+ R   K +   L Y   A    K            +  + 
Sbjct: 714 VHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMSAFGLTKQIDVSIIEAKQYIDTYF 773

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            N      + D                       Q  S +  +Q      A+   + G++
Sbjct: 774 DNYPGVLHYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHALRTAINAPMQGSS 833

Query: 503 CELVKK------AWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
            +++KK      AW  ++   +++   + +     V E  +
Sbjct: 834 ADIIKKSMLDIHAWIGENNPDIRMIMQVHDELVFEVSESKA 874



 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 16/119 (13%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
             V +    +    K   ++     RRL    +      L       +R           
Sbjct: 777 PGVLHYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHA---LRTAINAP----- 828

Query: 601 IVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652
            +Q  S DI+ + M +             +++ VHDE+V E  ++        +  LM 
Sbjct: 829 -MQGSSADIIKKSMLDIHAWIGENNPDIRMIMQVHDELVFEVSESKADEFAHKIQGLMA 886


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 126/382 (32%), Gaps = 58/382 (15%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +E      + +      E  L  +   +   G  ++   +   +    +    L  +I  
Sbjct: 457 METELAAQELMHLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHT 516

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L   LF   G+    + +       +   +  L     +     + 
Sbjct: 517 LAGTEF-NISSPKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTY 575

Query: 287 SAILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               KL  T  + + +      GR+  +      + TGR S      QN+P +       
Sbjct: 576 RMWTKLRSTYLDGIGALIRPATGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT------ 628

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR+      G   L+ AD + IE R+LA ++G+   I
Sbjct: 629 ------------------EEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLI 670

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF  G+DI+  T A+ F  P+D V+ EQR   K +   + Y     G A+         
Sbjct: 671 DAFRQGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREA 730

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH--------------------HLWMQDQYPE-FAV 494
           G  + ++ +      TF D   A++H                      +MQ  + E  A+
Sbjct: 731 GGYIDRYFERYHGVRTFLDKIVADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAM 790

Query: 495 KDKLIGTACELVKKAWRAKHQG 516
              + GTA +L+K A    +  
Sbjct: 791 NTPIQGTAADLIKIAMVRAYDA 812


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 132/371 (35%), Gaps = 59/371 (15%)

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             L + E  L  +  ++   G ++D + + +L +   +  KKL+E+I +L      +   
Sbjct: 453 FVLYNIEIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELAGTRF-NLNS 511

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----- 292
              L   LF    + L    +G      S S +  L     + R       + KL     
Sbjct: 512 PKQLSEVLFER--LKLPSGKKGKTGYSTSSSVLQNLINAHPIVRKILQYRELYKLKSTYV 569

Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + +   V+   GR+       G + TGR S      QN+P +                  
Sbjct: 570 DAIPNLVNPQTGRVHTKFNPTG-TATGRISSSEPNLQNIPIKS----------------- 611

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   ++ +G  LV  D + IE R++A ++ E   I AF  GEDI+  
Sbjct: 612 -------EEGRKIRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRR 664

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467
           T ++ F  P ++V    R+  K +   + Y     G ++            +  + ++  
Sbjct: 665 TASEIFGVPEEEVDDLLRSRAKAVNFGIIYGISSFGLSETVSITPEEAEKFIDSYFKHYP 724

Query: 468 STSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELV 506
               F D    E+                      +  +++ Y   A+   + GTA +++
Sbjct: 725 RVKLFIDKTIHEAREKLYVKTLFGRKRYIPEIKSINKQVRNAYERIAINAPIQGTAADII 784

Query: 507 KKAWRAKHQGV 517
           K A    ++ +
Sbjct: 785 KLAMIEIYKEI 795



 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYLNTATSQLMRERTY 593
              A +  +       R K  +   +  +R  +Y      +        + ++ +R   Y
Sbjct: 709 PEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGRKRYIPEIKSINKQVR-NAY 767

Query: 594 GGKLTENIVQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
                   +Q  + DI+   M    K          I+L +HDE++ E P+         
Sbjct: 768 ERIAINAPIQGTAADIIKLAMIEIYKEIENKNLKSRILLQIHDELILEVPEEEM----EF 823

Query: 648 CSLMTK 653
             LM K
Sbjct: 824 TPLMAK 829


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 142/424 (33%), Gaps = 65/424 (15%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +E    L+       + ER L  +   +  RG ++D+D +L L + +A E ++L+ +I +
Sbjct: 428 LEGEERLWWLYR---EVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELERLEAEIHR 484

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L   L+   G+     +  T K   S S +  L     +       
Sbjct: 485 LAGHPF-NLNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLETLRGAHPIVEKILQY 543

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + V    GRL       G + TGR S      QN+P +       
Sbjct: 544 RELAKLKGTYLDPLPKLVHPRTGRLHTRFHQTG-TATGRLSSSDPNLQNIPIRT------ 596

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  G  LVVAD + IE RVLA ++G++  I+
Sbjct: 597 ------------------EIGRRIRKGFVAGEGYLLVVADYSQIELRVLAHLSGDENLIR 638

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456
            F  G DI+  T A  F     +V   +R   K +   + Y   A    +          
Sbjct: 639 IFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLYGMSAHRLSRELGIDYGEAQ 698

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495
             + ++  +      F +    E+                         +++     A  
Sbjct: 699 AFIDRYFDSYPGVRAFMERVLEEARERGYVETLFGRRRHVPELLSKARNVREAAERVAFN 758

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDL-----TEGFACVVQEGGSISARRVANVPRLV 550
             + GTA +L+K A       +  L   L      E      +E  + +AR V       
Sbjct: 759 MPVQGTAADLIKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKATMEEA 818

Query: 551 MRRH 554
            R  
Sbjct: 819 WRLD 822



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
           VQ  + D++   M          G  ++L VHDE+V E P+        +    T   +W
Sbjct: 761 VQGTAADLIKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKA-TMEEAW 819

Query: 658 AKGLPLKAE 666
              +PL  E
Sbjct: 820 RLDVPLAVE 828


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/506 (17%), Positives = 167/506 (33%), Gaps = 73/506 (14%)

Query: 53  MPSDLLQYLRDETVMCVA-----HNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLP 106
           +P+D+   L        A     H  +F+    K   L  +I  +  I  S+LA     P
Sbjct: 350 IPTDI--ALNSNIFKAWAEDPQKHKIVFDAKRTKVALLRNNINMQGIIFDSLLASYLLNP 407

Query: 107 SSLKNACLA---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           +   +   A         +   EE       F KG+    P       HV          
Sbjct: 408 AENNHDIPAIANRKSRSDVQFDEEV------FGKGAKQKVPEADVLNEHVVRKTQLLFDL 461

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             ++E      ++   L + E  L L+   +   G ++D+D +  + E + +    L+++
Sbjct: 462 YPEMEEELGNNEQYELLKELEMPLALILAEVEHYGVQVDIDKLKDMGEDLKERLSTLEQE 521

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           + +L      +      L   LF   G+ ++  ++    T   +L            +L 
Sbjct: 522 VYELAGETF-NLNSPKQLGPILFEKLGLPVIKKTKTGYSTAADVLEQLENEHDIIPKLLM 580

Query: 281 RLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      +  L + V  D  R+         ++TGR S      QN+P +      
Sbjct: 581 YRQLGKLQSTYIEGLLKVVRKDTSRIHTRYN-QALTQTGRLSSIEPNLQNIPIR------ 633

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   + S +   +  AD + IE RVLA IAG++  
Sbjct: 634 ------------------LEEGRKIRQAFVPSKDNWIMFAADYSQIELRVLAHIAGDEKL 675

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           IKAF    DI+  T    F+   D+V+   R   K +   + Y     G ++        
Sbjct: 676 IKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 735

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFA 493
               ++++  +     T+ D    E+ H                       M+      A
Sbjct: 736 AKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTIMKRRRYLPDITSRNFNMRSFAERTA 795

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQ 519
           +   + G+A +++KKA       + +
Sbjct: 796 MNTPIQGSAADIIKKAMIDLDHRLKE 821


>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
 gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
          Length = 975

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 124/366 (33%), Gaps = 56/366 (15%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            +  L  +   + + G RID  ++ ++   +A E   L E I   +     +      L 
Sbjct: 576 IDLPLVPVLLRMEEAGVRIDPAVLNEMSSRLAVEIDNLAEKIYADSGHRF-NINSPKQLG 634

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297
             LF    +              +   + +LA++  +  L      + KL +     L  
Sbjct: 635 DVLFNKMDLPKPMKYGKGKVVSTAQDVLEELAENHPIAALVIEHRQLQKLKSTYLDQLPS 694

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
               +GR+  T    G + TGR S      QN+P +                        
Sbjct: 695 LSDREGRIHTTFNQVG-TATGRLSSTNPNLQNIPTRT----------------------- 730

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R+  IA+ G  L+ AD + IE R++A  + +   + A+  G+DI+  T A+ F
Sbjct: 731 -AIGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTAAEVF 789

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
               + + KE RA  K +   + Y     G A             ++ +    K    F 
Sbjct: 790 GVDAETMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVARTYIETYYDRYKGIKRFI 849

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D                         +S +  M+      A+   L GTA +L+K A  +
Sbjct: 850 DETLETVRLAGAVSTHFGRVRPIPDIQSRNPNMRGFAERTAINTPLQGTAADLIKLAMIS 909

Query: 513 KHQGVL 518
             + + 
Sbjct: 910 LDREIR 915


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/570 (18%), Positives = 173/570 (30%), Gaps = 92/570 (16%)

Query: 3   KLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +L +D+   S +P+     GV    E  QAV     + +   P +L      S + + + 
Sbjct: 327 RLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLGAPAQL----SMSDIDAVMG 382

Query: 59  QYLRDETVMCVAHNSLF-ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             L D  +  V H+  F E IL +  +G+          ++LA     P         L 
Sbjct: 383 PLLADPELPKVGHDVKFCEVILLRHRIGLV----GVSFDTMLASYLLDPEGKNQLHE-LA 437

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             E   KM+                      RA           Y     +    L  RL
Sbjct: 438 ERELGAKMQT--------LDEVAPKRRGQAQRALDEIELGEASSYGAAFADVALSLTDRL 489

Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            P          L   E  L  +   +   G  +D   + +L   +  E   L++   ++
Sbjct: 490 RPRLRAEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 549

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
               I  +     L   LF    +     ++           +  L+++     +     
Sbjct: 550 VGHDINLA-SPKQLEAVLFDELKLRSQRKTK--TGRSTDADVLEALSEEHPFPGVVLEHR 606

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           AI KL     + L   V    GR+         + TGR S      QN+P +        
Sbjct: 607 AIAKLKGTYVDALPRLVHPGTGRIHTRWG-QAVAATGRLSSQDPNLQNIPIRT------- 658

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G  +V AD + IE RVLA ++ +   + A
Sbjct: 659 -----------------ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDA 701

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGL 457
           F  G+D++V T  + F      V+ E R   K +   + Y  G            +    
Sbjct: 702 FRTGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESALAKRLDISRAEAAR 761

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKD 496
            +  +    +    F +   AE+                          + Q    A   
Sbjct: 762 FIDAYFARYRGVHEFMEGTMAEAKRSESVRTLLGRRRLLPDLRSSDRMRRAQAERIAQNT 821

Query: 497 KLIGTACELVKKAW-RAKHQGVLQLWKDLT 525
            + GTA +L+K A  R     V      LT
Sbjct: 822 PIQGTAADLLKLAMVRVPRPVVPGARMVLT 851



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 602 VQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM------ 651
           +Q  + D+L   M    +    G  +VLTVHDE+  E P          +   M      
Sbjct: 823 IQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFPL 882

Query: 652 --------TKNPSWAK 659
                      P+WA 
Sbjct: 883 DVPLVVDVGHGPTWAD 898


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 129/382 (33%), Gaps = 58/382 (15%)

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E  RE    L      +  L  +   +   G RID +++  L + +A +  ++ + I + 
Sbjct: 512 EVERE--DTLKVYEQIDLPLAPVLLAMEQHGVRIDSEMLRALGDRLAADMHRVSQQIYEQ 569

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L   LF    +              +   + +LA    + RL     
Sbjct: 570 AGHRF-NINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLEELAAHNDVPRLVLEFR 628

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            + KL     ++L     S GR+  T    G + TGR S      QN+P +         
Sbjct: 629 QLAKLKSNYVDSLPLLADSQGRVHTTFHQVG-TATGRLSSTNPNLQNIPVRT-------- 679

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+  IA+ G+KL+ AD + IE R++A  + +   + A+
Sbjct: 680 ----------------ALGREIRAAFIAAPGRKLLSADYSQIELRLMAHFSEDPLLLNAY 723

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
           + G+DI+  T ++ F    + + KE R   K +   + Y     G A+            
Sbjct: 724 STGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGIVYGISPFGLAQQLGIDQHEARQY 783

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           +  +    +    + D                         +S +   +      AV   
Sbjct: 784 IDTYFARYQGVRAYIDRVLEQTRREQRVRTLFGRVRPIPDIQSRNANQRGFAERTAVNTP 843

Query: 498 LIGTACELVKKAWRAKHQGVLQ 519
           L GTA +L+K A       + +
Sbjct: 844 LQGTAADLIKLAMIRIDARIKK 865


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 138/408 (33%), Gaps = 65/408 (15%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E+ L  +   +   G R+D+  +  L   +  E ++L+E++ +L      +  
Sbjct: 425 LWLYEEVEKPLSRVLAHMEATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLN 483

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILK 291
               L   LF   G+  +  +E T K   S + +  L +     D IL     S      
Sbjct: 484 SRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTY 543

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L   V     RL        A+ TGR S      QN+P +                 
Sbjct: 544 IDPLPALVHPKTNRLHTRFN-QTATATGRLSSSDPNLQNIPVRT---------------- 586

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +A  G +LVV D + IE RVLA ++G++  I+ F  G+DI+ 
Sbjct: 587 --------PLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHT 638

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466
            T +  F  P + V    R   K +   + Y   A                 ++++ Q+ 
Sbjct: 639 QTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERYFQSY 698

Query: 467 KSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACEL 505
                + +   AE                          +++     A    + GTA +L
Sbjct: 699 PKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAADL 758

Query: 506 VKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +K A               +LQ+  +L         E  +  A+R   
Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTME 806



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             + +  +   L   R   Y +   G   Y+    S++   R    ++  N+ VQ  + D
Sbjct: 698 YPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAAD 757

Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           ++   M        + G  ++L VHDE+V E P      V  
Sbjct: 758 LMKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQ 799


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 135/403 (33%), Gaps = 65/403 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D ER L  +   +  RG R+D   +  L + +    ++LD  I +L      S      L
Sbjct: 458 DVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARAQELDARIQELAGHPF-SVNSRDQL 516

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+   G+     ++ T K   + S +  L  +  +  L      + KL     + L 
Sbjct: 517 ESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEHPIIPLLLEYRELTKLKGTYLDPLP 576

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             V+   GRL  T     A  TGR S      QN+P +  +                   
Sbjct: 577 NLVNPLTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRSET------------------- 616

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+
Sbjct: 617 -----GREIRKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIHRRTAAQ 671

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471
                 D V+  QR   K +   + Y   A           +     ++++         
Sbjct: 672 VLGVMEDLVTPNQRRAAKTVNFGVLYGMSAHRLSNDLGISFAEASRFIERYFATYPRIRE 731

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D   A                        +  M++     A    + GTA +++K A 
Sbjct: 732 YIDATLAFGREHGYVETMYGRRRLVPELRSANRTMREAGERVAYNMPIQGTAADIIKIAM 791

Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
               +         +LQ+  +L         +  +   RRV  
Sbjct: 792 VELDEQLSALGARLLLQVHDELLIEAPSDRADEVAALTRRVME 834


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 141/385 (36%), Gaps = 63/385 (16%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF +  ++D     ELF+RL      E  L  +   +   G  ID        + +  +
Sbjct: 499 QLFEQRMEKD--GLLELFRRL------EMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQ 550

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
             +L   + +L      + R    L   LF   G+     ++G    T +  L       
Sbjct: 551 LDQLTAHVYELAGTQF-NIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQH 609

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              D IL            L+ L   V   GR+  T     A+ TGR S      QN+P 
Sbjct: 610 PVVDSILQYRKLEKMRSTYLDPLPRLVDPQGRIHTTFN-QKATATGRLSSSNPNLQNIP- 667

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                    G     +RSC IA  G+ LV AD + +E RVLA +
Sbjct: 668 -----------------------VRGPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHV 704

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----F 448
           + +   ++AF NGEDI+  T A  ++ P D+VS +QR   K +   L Y  GA+      
Sbjct: 705 SQDPALLEAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGAQKLAQEL 764

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEFA-------- 493
           K   +     + ++ + ++    F +  +A +            +   P+          
Sbjct: 765 KISTTQAKDFIARYFERLQGLKEFYEGVEASARKHGFVTTLGGRRRLLPDINSASGQAAA 824

Query: 494 ------VKDKLIGTACELVKKAWRA 512
                 +   + G+A +++K A  A
Sbjct: 825 LARRQAINTVIQGSAADIIKLAMLA 849



 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 598 TENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-L 650
              ++Q  + DI+   M          +    ++L VHDE++ E P       G L + L
Sbjct: 831 INTVIQGSAADIIKLAMLAVARDERLRELDARLLLQVHDELLLEVPADAAEEAGALVARL 890

Query: 651 M 651
           M
Sbjct: 891 M 891


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 116/655 (17%), Positives = 217/655 (33%), Gaps = 136/655 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQ-----------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
           C +   +  V                   + + S L + L          N+ F+R++FK
Sbjct: 410 CCWGMGENDVAYIPLGHNITTNLEKNLQLNTVLSTLDKILASRDYPKTFQNAKFDRLIFK 469

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
              G+ +     I   +LA     P        LAL +      + E   ++ +  K   
Sbjct: 470 -YQGVTL--DGVIFDPMLASYLLNPDHTHNLTDLALRYLGLQ--LTEYDHIVQKSGKKEP 524

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189
                D   + H  A      YC + V AT +L  +L             L D E+ L +
Sbjct: 525 QKTIADI--SIHTVA-----NYCGKQVYATWQLVGKLREELNKIPALFKLLVDVEQPLEV 577

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +  RG  I+   + +L + I  +   L+    K+      +      L   LF   
Sbjct: 578 VLAEMEHRGVIINSAYLQQLSQYIESDLATLEIKATKIAGEKF-NLGSPKQLSYILFEKL 636

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVS-S 301
           G+      + +       + + +L +       D I+     +      ++ L E V+  
Sbjct: 637 GLSTKYSRKISTGYSTDAATLEKLQEVDETGFVDAIIEYRTLAKLKSTYVDALPELVNHK 696

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             R+  +     A+ TGR S      QN+P +                           S
Sbjct: 697 TQRIHTSFN-QTATATGRLSSSNPNLQNIPIRT------------------------AFS 731

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   +  +G  +V AD + IE R+LA ++ E   I+A++N +DI+  T    F+   
Sbjct: 732 RQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK-- 789

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           + V+ E+R   K +   + Y  G       +   G+D    ++ ++              
Sbjct: 790 EDVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQ-------------- 832

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                    +F  +  L+ T  E +KK                 +  +    E      R
Sbjct: 833 ---------KFNQRYPLVFTYLETIKK-----------------QAISQGYVETILGRRR 866

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                 + +     +D+         +  + +K     L    + L+R            
Sbjct: 867 YFDFTNKTLREFKGKDLQ-------EIELNKLKN----LGPYDAGLLRSAANAP------ 909

Query: 602 VQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           +Q  S DI+   M    +    Y   ++L VHDE+V E P + +  +   + S+M
Sbjct: 910 IQGSSADIIKIAMVRLHQVLRPYQTKLLLQVHDELVFEVPPSEWDELQLQIKSVM 964


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/530 (16%), Positives = 184/530 (34%), Gaps = 68/530 (12%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           Y +   I    + +D     + D  +    P +L+++L +ET   + +++    ++  + 
Sbjct: 328 YLQD-TILKFGF-YDGVDHVVIDSDQLKEYP-ELIKWLENETTEKIVYDAKKTYVVAHR- 383

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSID 141
             +DI  K  +   +LA     PS        +  N++++  + +     I+ + KG   
Sbjct: 384 --LDIDIKNIVFDVMLASYIIDPSRTIDDVNSVVSNYNQNFVQDD-----ISIYGKGKKR 436

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             P D     H+ +       CKR++ A  E  +++  L + E  L  +   + + G   
Sbjct: 437 HVPEDTILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYT 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D++ + ++Q  I  +   L  +I +       +      L + LF    + ++  ++   
Sbjct: 497 DINDLRQMQSEIQGKLDLLISNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKTGY 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L          D IL     S      +  L + +S D R+        A +TG
Sbjct: 556 STAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISKDNRIHTRFNQTLA-QTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R      SN   ++
Sbjct: 615 RLSSVDPNLQNIP------------------------VRLEEGRKIRKAFKPTSNDSVIL 650

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I  ++   +AF N +D++  T  K F+   ++V+   R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAKAVNF 710

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE-------------------- 473
            + Y     G ++            +  +  +      +                     
Sbjct: 711 GIVYGISDYGLSQSLNITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKADGYVETLLHRR 770

Query: 474 -DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                  S +  ++      A+   + G+A +++K A     + + Q   
Sbjct: 771 RYIPDINSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDRQIKQTSY 820



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETP--DTPYFSVGTLCSLM 651
           +Q  + DI+   M    +   +  Y   ++L VHDE++ E P  +   FS+  +  +M
Sbjct: 796 IQGSAADIIKLAMVEFDRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSL-FVEEIM 852


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 167/505 (33%), Gaps = 64/505 (12%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
            +E+   P  L  +L D+ +  V H+     I+  +           + T V A      
Sbjct: 369 LSEEQVFPV-LFPFLADKKIALVGHDLKTVLIVLSQKGVKVQNPL--LDTMVAAYILNPA 425

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                      ++     +    K +     K S  S P +  R    +  +  GE    
Sbjct: 426 RRGYELSEIVQDYLHRQVEPLRKKLVGGSSPKQSPASFPPERLRDFACRRVEAIGELAST 485

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +E   E   R +     E  L  +   + ++G  +DL L+ ++ + +       +  I 
Sbjct: 486 LIEKMEETGLREL-FDSVEMPLVAVLAAMEEKGVLLDLHLLKEMSQELGHLLSLSEAKIY 544

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L       +     L+  LF    +     ++G          ++ LA +  L     +
Sbjct: 545 ALAGERFNIA-SPKQLQTILFEKLNLPKGKKTKGG--YSTDVEVLSNLALNHELPAEILA 601

Query: 286 GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             ++ KL     + L   ++   GR+  +     A+ TGR S      QN+P +      
Sbjct: 602 YRSMAKLKSTYIDALPSLINIRTGRIHTSYNQTVAA-TGRLSSSNPNLQNIPIRTL---- 656

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  +V AD + IE RVLA ++ +   I
Sbjct: 657 --------------------EGKRIRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLI 696

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455
            AFA GEDI+  T A  F    + ++ E R   KV+   + Y   A    +         
Sbjct: 697 NAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAFGLSRELGIPQKQA 756

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +  +S  T+ D                       +  S +  ++      A+
Sbjct: 757 QAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAERMAI 816

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519
              + GTA +L+K A       + +
Sbjct: 817 NAPIQGTAADLIKMAMLRIADLIRE 841



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 16/128 (12%)

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNTATSQL-M 588
           Q+               V       +             + +    + + +N A  QL  
Sbjct: 753 QKQAQAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAE 812

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYF 642
           R            +Q  + D++   M          G    + + VHDE+V E P     
Sbjct: 813 RMAINAP------IQGTAADLIKMAMLRIADLIREKGMKSAMTMQVHDELVFEVPQEEKI 866

Query: 643 SVGTLCSL 650
           ++  L   
Sbjct: 867 ALMNLVRQ 874


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 95/575 (16%), Positives = 178/575 (30%), Gaps = 115/575 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------KLWDRTEQSAMPSDLLQ 59
           D ET S  PL           A +   + A  +             +  E++        
Sbjct: 372 DCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKD 421

Query: 60  Y------LRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---- 108
                  L D  +  + HN  F+ +      L   I +  +  T + A       S    
Sbjct: 422 AQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISANLF-DTMIAAWLLDPARSSYGM 480

Query: 109 --LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             L  + L +        ++ G+     F    ++                    Y   D
Sbjct: 481 DKLAESILGVKTIRFKDLVKTGQN----FSDIPLN----------------EACPYAAED 520

Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T   +K+ +PL           D E  +  L   +  +G  +  + +    + + +E
Sbjct: 521 ADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKE 580

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
            +  ++DI +L       +     L+  LF    +     ++    T  S+L +      
Sbjct: 581 LEDCEKDIYRLVGHEFNIA-SPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDP 639

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
               IL+  A +       +TL +    +GR+  +    G + TGR S      QN+P +
Sbjct: 640 VPAKILDYRALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIPIR 698

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                   G     +R    A  G+ L+ AD + IE  +LA ++
Sbjct: 699 ------------------------GNEGRKIREAFQAEKGRVLISADYSQIELVILAHLS 734

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   ++AF  G D++  T +  F   I  VS++ R I K +   + Y       A   +
Sbjct: 735 KDQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASSLR 794

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------- 488
                    ++ +       S F      E+      +                      
Sbjct: 795 IPRKRADEFIKAYFATYSGVSGFMAQVCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAG 854

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
               AV   + GTA ++VK A     + + +   D
Sbjct: 855 AERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLD 889


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 68/402 (16%), Positives = 137/402 (34%), Gaps = 68/402 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  L  +   + + G+++D+  V    E++  E +++ ++I         +   T 
Sbjct: 489 LHDIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEF-NINSTR 547

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294
            L   LF   G+     ++       +   + +L     +  L      + KL++     
Sbjct: 548 ELGAILFDKLGLPTGKKTK--TGYSTNVDVLEKLIPKHPIAGLVLEYRKLTKLSSTYVTG 605

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +    D R+    +    +RTGR S      QN+P +                     
Sbjct: 606 LLKVTGPDQRVHSVFR-QTETRTGRISSTEPNMQNIPIRT-------------------- 644

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   +A  G  L+ AD + IE R+LA I+ +   I AF  G DI+  T +
Sbjct: 645 ----ELGSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATAS 700

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  P + +  E R   K +   + Y  GA    +      +     ++ +        
Sbjct: 701 QVFGVPAEVLPAELRRRAKAINFGIVYGIGAYSLSQDINVSVAEAKEYIENYLHTYSGVR 760

Query: 471 -TFEDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKA 509
               D  ++ +   +++  +                       A+   + GTA +++K A
Sbjct: 761 QYMNDIVESSAKSGYVKTMFGRVRHLPEITSSNHNTKAFGERVALNTPIQGTAADIIKIA 820

Query: 510 WRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
               +          Q +LQ+  +L    +        +  +
Sbjct: 821 MVKVYRRLKEEGLSAQLILQVHDELLIEVSKADAPRAKVILK 862



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGK 596
             A+             ++ ++ ++ SS +  Y     G   +L   TS     + +G +
Sbjct: 743 AEAKEYIENYLHTYSGVRQYMNDIVESSAKSGYVKTMFGRVRHLPEITSSNHNTKAFGER 802

Query: 597 LTENI-VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTL 647
           +  N  +Q  + DI+   M    +   + G    ++L VHDE++ E           +
Sbjct: 803 VALNTPIQGTAADIIKIAMVKVYRRLKEEGLSAQLILQVHDELLIEVSKADAPRAKVI 860


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 103/509 (20%), Positives = 180/509 (35%), Gaps = 82/509 (16%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS 107
           E + +   L  +   E +    +N   +        GI I    + +  +      G   
Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISYDLALAEHLTNGGGKI 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCK-- 164
           S ++  +   F+E             RF K   +S  P         Q +  F  Y    
Sbjct: 407 SFQSLLVNHGFTETAH----------RFAKEWGNSGLPIGRLPEQPEQYFGEFVAYLPII 456

Query: 165 RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           +D    E  R+    +  LSD E  L  +  ++   G  +D++ +  L+ L   E   L 
Sbjct: 457 KDAILEEINRKNLNHI--LSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLT 514

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-----HSNITQLAKD 276
           E+I  L+ G   + +    L   L+   G+  +D ++ T   +L      H  I +L   
Sbjct: 515 EEIYDLSGGPF-NIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLAF 573

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             + +L S+      +  L + V S   R+  +    GA  TGR +      QN+P +  
Sbjct: 574 RTIEKLLSTY-----VKALPKQVDSHTQRIHPSFDQTGAV-TGRLACRDPNLQNIPIRSE 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAG 394
                                       +R    ++      + AD + IE R LA ++ 
Sbjct: 628 R------------------------GILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +   + Y     G AKV K 
Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVLKI 723

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------------HHLWMQDQYP 490
                   +Q +       + F +    ++                         +    
Sbjct: 724 SIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEFPGSRAASG 783

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            FAV  ++ G+A EL+K A     Q + Q
Sbjct: 784 RFAVNTRIQGSAAELIKLAMLDISQAIKQ 812


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 140/396 (35%), Gaps = 65/396 (16%)

Query: 155 AWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           AW+       +  +     L+      +D E  L      +   G +++   + +  + +
Sbjct: 510 AWKAAAPLAGQLKDTGMYSLY------TDIEMPLIYSLFHMEQEGVKVERAELKEYGDRL 563

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
                KL+++I + T     +      L   LF    +     ++       +   + +L
Sbjct: 564 KVGIAKLEQEIYQETGHEF-NINSPKQLGEILFEQMELPGGKKTKTG--YSTAADVLEKL 620

Query: 274 AKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           A D  + +       + KLN+     L+  +  DGR+ G       + TGR S      Q
Sbjct: 621 APDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRIHGKFN-QTITATGRISSTEPNLQ 679

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R   +   G   V AD + IE R+
Sbjct: 680 NIP------------------------VRMALGREIRKVFVPKEGCVFVDADYSQIELRI 715

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           LA ++G++  I+A+ + +DI+  T ++ F+ P+D+V+  QR   K +   + Y     G 
Sbjct: 716 LAHMSGDERLIEAYRSAQDIHAITASQVFHVPLDEVTPLQRRNAKAVNFGIVYGISAFGL 775

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483
           ++            + ++ +      TF D                       + +S + 
Sbjct: 776 SEGLSISRKEAVEYIDKYFETYPGVKTFLDGLVKQGKEQGYVTTLYGRRRPIPELKSANF 835

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +      A+   + GTA +++K A  A  + + +
Sbjct: 836 MQRQFGERVAMNSPIQGTAADVMKIAMIAVDRELKK 871


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 101/553 (18%), Positives = 183/553 (33%), Gaps = 97/553 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------AMPSDL 57
           L +D ET S             +     L   +   +P + W                 L
Sbjct: 375 LAVDTETTS------------LDTFQAELVGISLSIKPKQAWFVYFGKGGVDRRVALDML 422

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L + ++     N  ++ ++ KK  GIDI    +  T + +      +      LAL 
Sbjct: 423 KPVLENPSLRKTGQNLKYDLLVLKKY-GIDINPVAF-DTMLASYVLDPEAKHNLDDLALR 480

Query: 118 -FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             S   T  +E    GK  ++       +   Y C  A+     Q         V   + 
Sbjct: 481 HLSIKTTTYDELVADGKKKMSILDVPPGELSDYACQDADLALRLQE--------VFKEKL 532

Query: 173 LFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           L ++  L    + E  L  +  T+   G  ID D + K +  ++++  +L E I +   G
Sbjct: 533 LQEKDLLWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFE-ASG 591

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L   LF I G+     ++       +   +  LA    + +      ++ 
Sbjct: 592 RVFNLDSPKQLAHILFDILGLPSGKATKTGF--STNVQVLEDLAPIHPVAQDLLEYRSLQ 649

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL       L + ++   G+L  +   +  + TGR S      QN+P +           
Sbjct: 650 KLRNTYIEALPKMINPLTGKLHTSFNQH-VTATGRLSSSHPNLQNIPIRTL--------- 699

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   I S     L+ AD + IE RV A I+G++  ++AF 
Sbjct: 700 ---------------IGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEAFR 744

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           N EDI+  T    FNT   +++ E R   K +   + Y     G ++      +     +
Sbjct: 745 NREDIHSATARTIFNTT--EITPEMRRKAKEVNFGVLYGIMPFGLSRRLNISRNEAKNII 802

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
             +++                                    S +  MQ      A+   +
Sbjct: 803 DTYTEKYPGIFNALQQIISDGKERGYVSTLLGRRRYIPDLNSRNKNMQKAAERAAMNTPI 862

Query: 499 IGTACELVKKAWR 511
            GTA +++K A  
Sbjct: 863 QGTAADIIKCAMN 875



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    ++L VHDE++ ETP+     + TL  
Sbjct: 862 IQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHDELLFETPENEKHRLKTLVE 915


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 178/554 (32%), Gaps = 72/554 (12%)

Query: 7   DIET-RSPQP---LPKVGVWAYAEQAVIT---LCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           D+ET         L    +    E        +  +    +   +    E     SDL++
Sbjct: 316 DVETDFQHIDFKNLSHATIHFELEDTNYLKDNILKFGLYTDDTHIVINAEDIKQHSDLIE 375

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNA-CLALN 117
           +L D   +   +++    +   +   +DI  +      +LA        ++ +   +   
Sbjct: 376 WLEDAQTVKTVYDAKKTYVAAHR---LDINIQNVQFDVMLASYIIDPSRAIDDVKSVVSL 432

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           + ++  K       ++ + KG     P D     HV +        K  +E   + + ++
Sbjct: 433 YGQNYVKDN-----VSIYGKGKKHHIPEDNILNEHVASITEAIASAKPLMEEQLKEYNQV 487

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             L+D E  L  +   + + G   D++ +  ++  I ++   L ++I +       +   
Sbjct: 488 ELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAGEEF-NINS 546

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L + LF    + ++  ++    T   +L          + IL     S      +  
Sbjct: 547 PKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLKGEHPIIEHILEYRQLSKLQSTYVEG 606

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +S D R+        A +TGR S      QN+P +                     
Sbjct: 607 LQKVISKDNRIHTRFNQTLA-QTGRLSSVDPNLQNIPIR--------------------- 644

Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R      S    ++ AD + IE RVLA I  ++   +AF +G DI+  T 
Sbjct: 645 ---LEEGRKIRKAFKPTSEDSVILSADYSQIELRVLAHITQDESLKEAFIHGHDIHTATA 701

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            K FN   + V    R   K +   + Y     G ++            +  +  +    
Sbjct: 702 MKVFNVEANDVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGV 761

Query: 470 STFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             +                            S +  ++      A+   + G+A +++K 
Sbjct: 762 KQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKL 821

Query: 509 AWRAKHQGVLQLWK 522
           A    ++ V     
Sbjct: 822 AMVKFNEKVKNTNY 835


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 136/392 (34%), Gaps = 66/392 (16%)

Query: 161 EYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
              KRD+E      + L PL  + E  L  +   +   G R+D   +  L E  + E  +
Sbjct: 473 PALKRDLEI-----RGLWPLYHNLELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIAR 527

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+E+I KL      +      L   LF   G+     ++           + +LA    +
Sbjct: 528 LEEEIYKLAGTTF-NLNSPKQLAEILFDKLGLPPQKKTK--TGYSTGADVLEKLAPYHEI 584

Query: 280 NRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +       ++KL +     L + +    G++    Q    + TGR S      QN+P  
Sbjct: 585 VQRILDWRQLIKLQSTYIEGLLKVIRPETGKIHTCFQ-QAVTATGRLSSTDPNLQNIP-- 641

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392
                                         +R   I S  G K+V AD + IE RVLA  
Sbjct: 642 ----------------------VRVEEGRRLRQAFIPSESGWKIVSADYSQIELRVLAHF 679

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           + +   ++AF +  DI+  T A+ F  P ++V+   R   K +   + Y     G ++  
Sbjct: 680 SKDPALVQAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVYGISDYGLSQNL 739

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487
                     + ++        ++ +   A +                      +  ++ 
Sbjct: 740 GIPRKEAAEFIARYFAKFPRVKSYMEETVAAARKNGFVTTLLGRRRYLPDIHSSNYNLRS 799

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                A+   + G+A +++K+A     + + +
Sbjct: 800 FAERTAMNTPIQGSAADIIKRAMVEVDRRLTE 831


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/559 (16%), Positives = 166/559 (29%), Gaps = 92/559 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112
             L +   DET+  V HN  F+  +  +    +  +     T V A            + 
Sbjct: 476 HQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDV 535

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             A  F       EE  A    F        PY+C              Y   D + T  
Sbjct: 536 LAASFFQIRTITFEEVVAKGQTFA-----HVPYECA-----------VRYAAEDADITFR 579

Query: 173 LFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L+  L    +           E  L  +   + + G  +  D+V +L    +   ++ + 
Sbjct: 580 LYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEH 639

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           DI  L      +      L+  LF    +      + T      HS + +LA+   +   
Sbjct: 640 DIFSLAGHEF-NIGSPKQLQTVLFQELHLPPGK--KNTQGYSTDHSVLKKLARKHPIAEK 696

Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                 + KL      +L++     GR+  +    G + TGR S      QN+P +    
Sbjct: 697 ILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIG-TATGRLSSRNPNLQNIPIKS--- 752

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R    A+ G +L+ AD   IE   LA ++ +  
Sbjct: 753 ---------------------TEGRKIRQAFQATVGHELISADYTQIELVALAHLSQDRN 791

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMAS 453
            + AF    DI+  T A  FN  ID V    R I K +   + Y   A       K    
Sbjct: 792 LLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQK 851

Query: 454 HCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEF 492
                + ++ +       F                           +S +   + +    
Sbjct: 852 EAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERM 911

Query: 493 AVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           A+  ++  +A ++VK A        A+     QL   + +          +   + +   
Sbjct: 912 ALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFA 971

Query: 547 PRLVMRRHKRDVHIVLPSS 565
                      + I + S 
Sbjct: 972 EMEHAVELSIPLRIHVESG 990



 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLT 627
           G   Y+ T  S+   ER    ++  N  +Q+ + DI+   M    +          ++L 
Sbjct: 889 GRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQ 948

Query: 628 VHDEIVSETPDTPYFSVGTL 647
           VHDE++ E P      V  +
Sbjct: 949 VHDELIFEAPAAETAIVKEI 968


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 93/537 (17%), Positives = 179/537 (33%), Gaps = 85/537 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A+++D                 DL +    E    V+H    + ++     GI+  SK 
Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLREIFEREDCEFVSHEIK-DFLVKLSYKGIECKSK- 383

Query: 93  WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++ T+++A       S  +    L          H     +GK               Y 
Sbjct: 384 YLDTAIMAYLLNPSESNYDLDRVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 443

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           C R NH+   +              ++ K L    + E  L  + +++   G+ +D +++
Sbjct: 444 CGRCNHLFELKDKLMSFIE----EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLDRNVL 496

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +L E I +   ++ + I K       +      L  +LF    + ++  ++    T   
Sbjct: 497 KELSEKIDERISEILDKIYKEAGYQF-NVNSPKQLGEFLFEKLNLPVIKKTKTGYSTDSE 555

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            I+     +      +      +  + R+    +   A+ TGR S  
Sbjct: 556 VLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVAA-TGRISST 614

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382
               QN+P +E                             +R   I       +V AD +
Sbjct: 615 EPNLQNIPVRE------------------------EFGRQIRRAFIPRTKDGYIVSADYS 650

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V+ E R   KV+   + Y 
Sbjct: 651 QIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVNFGIIYG 710

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477
               G AK  K         +  + +  K    + +                       +
Sbjct: 711 ISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMNRRRYIPE 770

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
             S +   + Q    A+   + G+A +++K A    +Q           +LQ+  +L
Sbjct: 771 INSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDEL 827


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/523 (16%), Positives = 188/523 (35%), Gaps = 71/523 (13%)

Query: 32  LCAYAWDDEP-VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           + A A+ +E  V + D  + +       ++L D +V     ++     +     G D+  
Sbjct: 339 VIAVAFGNEKNVFVTDL-DTAVASEVFKKWLSDASVEKHLFDTK-AAKVLAHRFGFDLKG 396

Query: 91  KRWICTSVLARTNGLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
            ++   S+LA        +K    +A      +   +E     A + KG     P D   
Sbjct: 397 AKY-DVSLLAYLVDTNDIVKEISDVARRVDVTILSSDE-----AVYGKGVKIQIPEDKEV 450

Query: 150 ANHVQAWQLFGEY-CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            N   A ++F        +    E  ++     + E  L  +   +  +G R+D + +++
Sbjct: 451 WNQHLAAKVFTIAKAPEKLLKRLEENEQTHLYWEMELPLSDILARMEIQGIRVDRERLVE 510

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           +     +  K+++++I +L      +   T  L + LF   G+ ++  ++    + +   
Sbjct: 511 MGVEFEERLKEIEQEIYELAGEEF-NINSTKQLGVILFEKMGLPVIKKTKTGYSTAVD-- 567

Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA    +  L      + KLN+     L   +  DG++         ++TGR S  
Sbjct: 568 VLEKLAHQAPIVELILEYRQLAKLNSTYVEGLQAYIQEDGKIHTRF-IQNLTQTGRLSSV 626

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382
               QN+P + +                            +R   +   +  K++ +D +
Sbjct: 627 DPNLQNIPIRTK------------------------EGRRIRYAFLPEHDDWKILSSDYS 662

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGY 441
            IE RVLA IAG+   I+AF N  DI+  T  + F     D V+ E R   K +   + Y
Sbjct: 663 QIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAKAVNFGIVY 722

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------- 481
                G ++            + ++ +  +    F +    E+                 
Sbjct: 723 GISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHRRRYLP 782

Query: 482 -----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                +  ++      A+   + G+A +++K A     + + +
Sbjct: 783 DIHSSNFNLRSFAERTAMNSPIQGSAADILKMAMIELDREMRE 825



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN 654
           +Q  + DIL   M    +         +++L VHDE++ E P     S+ +L   +M   
Sbjct: 804 IQGSAADILKMAMIELDREMRERKFKANLLLQVHDELIFEVPQDELESLQSLVEGVMENA 863

Query: 655 PSWAKGLPLKAE 666
            S    +PL+A+
Sbjct: 864 VS--LKVPLRAD 873


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/584 (17%), Positives = 185/584 (31%), Gaps = 129/584 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---------------DDEPVKLWDR 47
            L ID ET S QP        +AE     +  Y++               ++E     D 
Sbjct: 382 SLVIDTETTSVQP-------RWAE-----IVGYSFCYRDGEAWYLPIRAPENEQALCLDA 429

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-P 106
           T  + +       L D  +  V  N  ++ ++  ++ GI++    +  T V         
Sbjct: 430 TAVADL---FRPVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAAF-DTMVADYLIDPGE 484

Query: 107 SSLKNACLALNFSEHL-----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
            S     LA     H      + +  GK  I       +D  P                +
Sbjct: 485 RSHNLDELARRHLGHQNIEIESLIGTGKKQIR------MDQVPLAAI-----------TD 527

Query: 162 YCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D      L   L P  +           E  L  +   +  RG ++D   +++L  
Sbjct: 528 YAAEDALVPYRLLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELST 587

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
             + +   L+ +I  +  G   +      L   LF    + ++  ++      +    + 
Sbjct: 588 DFSTKITALENEIYAINHGEF-NIDSRLQLAKLLFEDLKLPILKKTK--TGPSMDAEVLE 644

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
            LA+   L +       + KL     ++L E +    GR+  +L+    + TGR S    
Sbjct: 645 DLARLHELPKKVLEYRHLAKLRSTYVDSLQELIHPVTGRVHTSLK-QDVAATGRLSSQDP 703

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P +                              +RS       G KL+ AD + I
Sbjct: 704 NLQNIPVRT------------------------AEGRAIRSAFQPGIEGWKLMAADYSQI 739

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E RVLA  +G+    +AFA+  DI+    ++ +      V+ E R   K +   + Y   
Sbjct: 740 ELRVLAHFSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQS 799

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA---------------------- 478
             G A+            +  +         F                            
Sbjct: 800 PFGLARSLGIENDEAAAFISAYFAQYPGVDDFMRETLIGCRKQGYVTTIAGRRRPVTGVR 859

Query: 479 ESHHLWMQDQY---PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           + H +  + Q       A+   + G+A +++K+A    H+ + +
Sbjct: 860 DPHAVNDKRQRTLPERIAINTVIQGSAADIIKRAMITVHRRLKE 903


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++        ++  +E ++ 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEDILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             ++        KK LGID     + C       +          L  N+      ++EG
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435

Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           +  +    F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ +++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A S +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANSSNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N++       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANSSNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 86/519 (16%), Positives = 181/519 (34%), Gaps = 89/519 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---A 112
           D    L  + +    +N   + +     +  +I  K       +A      +S       
Sbjct: 368 DFKAVLESKDIKKYGYNMKEDYVAL---MPYEIALKGMSFDIAIAEYLIDSTSTNTSECG 424

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW------QLFGEYCKRD 166
            +A+ +     K +E         KG       D T+   +  +       +     K  
Sbjct: 425 AIAMKYLMKSVKSKE-----ELLGKGVKAKKFEDLTK-EELSGYISSILNTVVNAMPKMK 478

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E      ++L    D E  L  +   +   G ++D +++ +L +   +    L+E+I  
Sbjct: 479 EEIESTKIEKLFD--DVEMPLVEVLGNMEYTGIKVDKEMLDELGKEFTKIISSLEEEIYG 536

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L + LF    + ++  ++    +      + +L     +       
Sbjct: 537 YAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYSTNAE--VLEKLKDKHPIIDKIGEY 593

Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             I+KLN+     L+  ++  DGR+  T      + TGR S      QN+P         
Sbjct: 594 RQIVKLNSTYVEGLTALINPIDGRIHSTFN-QTITTTGRISSTEPNLQNIP--------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R+  ++ + K+LV AD + +E RVLA ++G+   I 
Sbjct: 644 ---------------VRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLAHMSGDQNMID 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +GEDI+  T ++ FN P+++V+ E R+  K +   + Y     G ++          
Sbjct: 689 AFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIYGKTDFGLSEDLNIPVPQAK 748

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             ++ +    +    F D                       + +S +   +++    A+ 
Sbjct: 749 QYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFNRRRYIPEIKSKNFMERNRGKRAAMN 808

Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
             + G+A +++K A             + + +LQ+  +L
Sbjct: 809 APIQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDEL 847



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 8/120 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK- 596
             A++          + K  +  ++ ++ +  YS    +                  GK 
Sbjct: 745 PQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFNRRRYIPEIKSKNFMERNRGKR 804

Query: 597 -LTENIVQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649
                 +Q  + DI+   M    +   K      ++L VHDE++ ETP      V  +  
Sbjct: 805 AAMNAPIQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDELIVETPIDELEKVEKIVR 864


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 101/558 (18%), Positives = 183/558 (32%), Gaps = 101/558 (18%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
             +    +  +   A       A+     + W        P  L++ LRD + +    + 
Sbjct: 330 ADIRGCALGRFDGSA-------AFVQGEARDW--------PQPLVECLRDGSKLKAVQDL 374

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133
               +   +  GID+    +  T V A     P+   +   A+       ++  G+    
Sbjct: 375 KPLLLALHRQ-GIDM-PGPYFDTMV-ADYLLNPNRRAHTLEAIAMDLLSYQLGAGEREDT 431

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDL 187
              KG       D          +  GE      +    L +RL          D E  L
Sbjct: 432 --SKGPQSLFDVDEALV------RRTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVEMPL 483

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   I   G+ +D+  +  L + +  E +++   I +L  G   +      L   LF 
Sbjct: 484 VPVLAEIERNGFLLDVAGLQALSKELEHELEQMVGSIYRLGGGEF-NIGSPKQLATVLFE 542

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD 302
             G+  +  ++           +TQLA    L     +   + KL     + L + V+ +
Sbjct: 543 TLGLKPLRKTK--TGYSTDEDTLTQLASQHELPAQILNYRTLTKLKSTYVDALPQLVNPE 600

Query: 303 G-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             RL  +L    A+ TGR S      QN+P                          G   
Sbjct: 601 TKRLHTSLNQTVAA-TGRLSSTDPNLQNIP------------------------VKGDYG 635

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   IA  G +L+ AD + +E R+LA ++ +   ++ F  GEDI++ T  + FN P 
Sbjct: 636 LRIREAFIAPPGHQLLCADYSQVEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPA 695

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
            +V+++ R   K +   + Y     G A       +     ++ F +   +     D   
Sbjct: 696 GEVTRDMRRAAKSVVFGIVYGISPFGLASNIGVPQADAKKYIETFFEKFAAVRALMDRNI 755

Query: 478 AESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKHQG 516
            +                                  AV   + G+A +L+K A    HQ 
Sbjct: 756 DDGKTKGYTTTILGRRRPIPELQGGDPSQRGVGERMAVNSPIQGSAADLIKVAMIKVHQR 815

Query: 517 ----------VLQLWKDL 524
                     +LQ+  +L
Sbjct: 816 LQNELPRCKMILQVHDEL 833



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 453 SHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL-VKKAW 510
              GL +++             D+ Q E   L    Q P      ++     ++ +  A 
Sbjct: 632 GDYGLRIREAFIAPPGHQLLCADYSQVEPRILAHLSQDPRLL---QVFEKGEDIHMATAM 688

Query: 511 RAKHQGVLQLWKDLTEGFACVV----QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +    ++ +D+      VV                 VP+   +++         + R
Sbjct: 689 EIFNLPAGEVTRDMRRAAKSVVFGIVYGISPFGLASNIGVPQADAKKYIETFFEKFAAVR 748

Query: 567 RLVYSDVKGDCSYLNTATSQLMR------------ERTYGGKLTENI-VQAISRDILCEG 613
            L+  ++    +   T T    R            +R  G ++  N  +Q  + D++   
Sbjct: 749 ALMDRNIDDGKTKGYTTTILGRRRPIPELQGGDPSQRGVGERMAVNSPIQGSAADLIKVA 808

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL--PLK 664
           M    +          ++L VHDE++ E P+        L  + M    + A GL  PLK
Sbjct: 809 MIKVHQRLQNELPRCKMILQVHDELIFEVPEQELEQAKQLVKAEMEATGA-ALGLSVPLK 867

Query: 665 AE 666
            +
Sbjct: 868 VD 869


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 105/609 (17%), Positives = 193/609 (31%), Gaps = 100/609 (16%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDET 65
           D ET S   L        AE   I+ C  A     V    D+   + +      +  +E 
Sbjct: 365 DTETTSVNALE-------AELVGISFCWSAHKGYYVPFPTDKAATTKLLETFRPFFENEH 417

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           +  V  N  ++  + +    I++    +  T +               L+  +  +    
Sbjct: 418 IGKVGQNLKYDLKVLQNY-NIEVRGALF-DTMIAHYLLNPDMRHNMDILSETYLNYTPIA 475

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL---FKRLIP--- 179
            E   LI +              R+          EY   D + T +L   FK  +P   
Sbjct: 476 IES--LIGK----------GKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFKEEMPKVN 523

Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                +D E  L  +   +   G  +D+  + +  + +  +  +L+  I +        +
Sbjct: 524 AEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQAGENFNLA 583

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAIL 290
                L   LF    ID       T +   S   +   A        IL           
Sbjct: 584 -SPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILEWRQVQKLKST 642

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L   V+   GR+  T      + TGR S      QN+P +                
Sbjct: 643 YVDALPLEVNKLTGRVHTTY-MQTVAATGRLSSNNPNLQNIPIRT--------------- 686

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         VR   IA      L+ AD + IE R++A ++ E   I +F   EDI
Sbjct: 687 ---------PRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDI 737

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           + +T AK F+ P+++V++EQR+  K +   + Y     G +       S     +  +  
Sbjct: 738 HRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLSRSESKELIDTYYA 797

Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
              +   +                            S +  ++      AV   + G+A 
Sbjct: 798 TYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNAVNAPIQGSAA 857

Query: 504 ELVKKAW-RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           +++K A  R +H+ + Q             +    +    V +VP+  +   K  +   +
Sbjct: 858 DIIKIAMIRIQHELIRQ---------QLQTRMLLQVHDELVFDVPKTELNTVKPLIKEAM 908

Query: 563 PSSRRLVYS 571
            S+  L   
Sbjct: 909 ESAFTLAVP 917



 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M               ++L VHDE+V + P T   +V   +   M   
Sbjct: 852 IQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNTVKPLIKEAMESA 911

Query: 655 PSWAKGLPLKAE 666
            + A  +PL A+
Sbjct: 912 FTLA--VPLVAD 921


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/580 (16%), Positives = 181/580 (31%), Gaps = 107/580 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDLL 58
            ++  D ET         G  A A   V    +    +    PV   D+ +  A+    L
Sbjct: 366 QEISFDTET--------TGTDANAVDLVGMSFSIKAGEGWYIPVP-ADKAQAQAIVDSFL 416

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
                  +  +  N  ++ I+ K      +     +  ++LA     P   +   L    
Sbjct: 417 PLFNTTHITLIGQNIKYDMIVMK---WYGVEFNGPVFDTMLAHYLIEPEGRRGMDL---L 470

Query: 119 SEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           S    + E    + LI +  KG  +    +  +           EY   D + T +L ++
Sbjct: 471 SAQYLQYEPVSIETLIGKKGKGQGNMRDVEIDKI---------KEYAVEDADITLQLKEK 521

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             PL           D E  L  +   +   G  +D+  +      +  E K+ +E +  
Sbjct: 522 FAPLLPLKAVDKVFYDVENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVYT 581

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNR 281
                   +     L   LF    +D       T +       + +LA        IL  
Sbjct: 582 QAGVRFNLA-SPKQLGEVLFEKLLLDPKAKKTKTGQYATGEDVLAKLANKHQIVEDILVF 640

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   ++    R+  +      + TGR S      QN+P +       
Sbjct: 641 RELSKLKSTYVDALPLMLNKRTNRVHTSYN-QAVAVTGRLSSNNPNLQNIPIRTDR---- 695

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR   +A      L+ AD + IE R++A I+G+   I
Sbjct: 696 --------------------GREVRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMI 735

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF  G DI+  T AK +   +  V+ + R   K +   + Y     G ++         
Sbjct: 736 DAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVSAFGLSENLGIARGEA 795

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  +     S   + D                      +   S +  ++      A+
Sbjct: 796 KTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGRKRWLKDINSSNAVVRGYAERNAI 855

Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
              + GTA +++K A  + H          + +LQ+  +L
Sbjct: 856 NMPIQGTAADMIKLAMISIHKTLKKENLRSRMILQVHDEL 895


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/570 (17%), Positives = 188/570 (32%), Gaps = 106/570 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSD-----LL 58
           +D+ET S  P+           A I   + +   +              +        L 
Sbjct: 321 LDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALNNLK 370

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +++   +  N  ++  + K      I   R    +++A     P   +     L  
Sbjct: 371 SILENQSAKIIGQNLKYDYSVLKMH---GIEPVRPSFDTMIAAYLLNPDEKRFNLDELAM 427

Query: 119 SEHLTKMEEGKALIA----RFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATREL 173
                KM   + L       F   +       D T+            Y   D + TR L
Sbjct: 428 KFLNYKMISFEELFKDTSPLFGAVTFADVSVEDATK------------YSAEDADITRRL 475

Query: 174 FK----------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           ++           L  L   E  L  +   +   G  +++D +  L    A    +L + 
Sbjct: 476 YEILNIKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQ 535

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I         +      +   LF    I     +  T +       + +L+++  + RL 
Sbjct: 536 IYNHAGEAF-NLNSPKQVAHILFDKLKIQPTKKT-STGEPSTRADVLEELSEEHPIVRLI 593

Query: 284 SSGSAILK-----LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                  K     L+ L + V    GR+  +    G + TGR S      QNLP +    
Sbjct: 594 LEYRKYQKIKSTYLDVLPKLVHPETGRIHSSFHQTG-TATGRLSSSDPNLQNLPSK---- 648

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396
                                  S  +R  ++   +  K++ AD + IE RVLA ++ + 
Sbjct: 649 --------------------QEESREIRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQ 688

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------------ 444
             I+AF   EDI+  T ++ F  P ++V+ + R+IGK++  ++ Y               
Sbjct: 689 NLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSPYGLSQRTGLSY 748

Query: 445 --AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPE 491
             A+ F          ++++   + S +    +            Q  S +  ++ +   
Sbjct: 749 DQAQKFIGEYFSLYPSVKEYFAKIVSYAKTHGYVRTMFGRRREVPQLRSKNASVRQEGER 808

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            A+   + GTA +++K A    +  + Q+ 
Sbjct: 809 IAINTPIQGTAADIMKLAMINLYDKIKQMR 838



 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M N             ++L VHDE+V E PD     V  L  
Sbjct: 815 IQGTAADIMKLAMINLYDKIKQMRLQSKMILQVHDELVFEVPDEEVEIVKNLVR 868


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 95/538 (17%), Positives = 190/538 (35%), Gaps = 91/538 (16%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           + D   +       +  +P  +   L +  +    ++   + IL K     +I       
Sbjct: 343 SLDGNEIYYV---NEDELPQ-IKTLLSNPEIKKHGYDLKEDYILLK---PYEIELNSMDF 395

Query: 96  TSVLARTN---GLPSSLKNACLALNFSEHLTKMEE---GKALI-ARFCKGSIDS-PPYDC 147
              +A         +S + + +A+ +     K +E   GK     +F +   D    Y  
Sbjct: 396 DITIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKGAKAKKFDEIEFDELSAYIG 455

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
              N V    L  E   ++ E    LF         E  L  +  ++   G ++D D + 
Sbjct: 456 DILNTVNGVYLKMEEKLKETE-MDGLFYH------VEMPLVEVLGSMEYIGMKVDKDQLN 508

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           +L+E       +L+ +I +L      +      L + LF   G+ ++  ++    +    
Sbjct: 509 ELKEKFTTIINELENEIFELAGEPF-NINSPKQLGVVLFEKLGLPVIKKTKTGYSTNAE- 566

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWS 321
             + +L     +    +    I+KLN+     L + ++   GR+  +      + TGR S
Sbjct: 567 -VLEKLRDKHEIIDKITEYRQIVKLNSTYVEGLLKIINPKTGRIHSSFN-QTITTTGRIS 624

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   +A    KLV AD 
Sbjct: 625 STEPNMQNIP------------------------VKTEMGRDIRKVFVADENCKLVDADY 660

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E RVLA ++G++  I AF +GEDI+  T ++ F+  I  V+ +QR   K +   + Y
Sbjct: 661 SQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTSKQRIEAKAINFGIIY 720

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WE 476
                G ++      +     +  +         F D                       
Sbjct: 721 GKTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEFMDEAVESATETGYATTILNRRRYIP 780

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
           + ++ +  +++Q   FA+   + G+A +++K A             K + +LQ+  +L
Sbjct: 781 EIKASNFIVRNQGKRFAMNAPIQGSAADIIKVAMVNVYNKLKENNMKSKLILQVHDEL 838



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M N             ++L VHDE++ E  D        +  
Sbjct: 802 IQGSAADIIKVAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVR 855


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/563 (18%), Positives = 191/563 (33%), Gaps = 99/563 (17%)

Query: 2   SKLFIDIETRS----PQPLPKVGVW-AYAEQAVITLCAYAWDDEPV------KLWDRTEQ 50
            +++ID+ET S       +    V     E   I          PV      +  D    
Sbjct: 357 EEIYIDLETTSVTAMEADIVGWAVAAKPGEAFYI----------PVRGPAGQQTMD---N 403

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNG 104
             +       L +  +     N  ++ +++K+       +G+D     ++  +  AR++G
Sbjct: 404 QEVLDIFRPLLENPRIAISNQNIKYDLLVWKRHGIELQKIGMDPMVGHYLLDAG-ARSHG 462

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           L SSL +  L          +  GK    R  +  ID      +         L      
Sbjct: 463 L-SSLADEFLKHRMIPISELIGTGKNQ-KRMDEIDIDQVAEYASEDADA---ALQIADII 517

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           RD    +EL+       D ER L  +   +   G R+D + + +  EL+ +  ++L E++
Sbjct: 518 RDKLHEQELWNL---YQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVEELLEEL 574

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             + D    +      LR  LF   G+ +   ++         S + +LA    L     
Sbjct: 575 EGMADRPF-NPDSPKQLREVLFDEIGLPVQKRTK--TGPSTDQSVLEKLAPLHPLPAKII 631

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     ++L + ++   GR+  +     A+ TGR S      QN+P +     
Sbjct: 632 EYRQLAKLKGTYLDSLPKLINQQTGRIHASFNQVVAA-TGRLSSSDPNLQNIPIRT---- 686

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    VR   I    G +L+  D + IE RVLA  +G+  
Sbjct: 687 --------------------PEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAA 726

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AF +G+DI+    A+ F      V  + R + K +   + Y     G A        
Sbjct: 727 LQEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSPYGLAAALNIPQE 786

Query: 454 HCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWM--------------------QDQYPEF 492
                +  +       S F E+  +  +   +                     ++     
Sbjct: 787 QAAEFIDDYFMRYPGVSQFIEETLEQCARSGYAYTMLGRRRPITGIKNTGGRNRNMPERT 846

Query: 493 AVKDKLIGTACELVKKAWRAKHQ 515
           A+   + G+A +L+K A    H+
Sbjct: 847 AINTVIQGSAADLIKLAMLNVHR 869


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
          Length = 1036

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 86/509 (16%), Positives = 167/509 (32%), Gaps = 85/509 (16%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D  ++  +  ++  +  D ++   A N+ F+  +     GI++ +  +  T V +     
Sbjct: 505 DLDKEE-ILKEIKPFFADSSLKFFAQNAKFDLQML-HYAGIEVKNIDF-DTLVASFICNP 561

Query: 106 PS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                    L+L++  +     E         KG       D          +    YC 
Sbjct: 562 SRQFHDLDSLSLHYLNYRKISTES-----LIGKGKKQISMAD-------LPVERVATYCC 609

Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            DV+ T  L   L              + +  L  +   + + G  I+L  + K+    +
Sbjct: 610 EDVDITLRLRNELEAELHRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFS 669

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
            E KK +E I  L      +      + + LF   G+     +        S   +  LA
Sbjct: 670 AELKKCEEQIHALAGHEF-NINSPKQVGVVLFEEMGLKAGKKT--ATGYSTSAEVLENLA 726

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  + R       + KL     + L + VS  D R+        A+ TGR +      Q
Sbjct: 727 AESEIVRAILRHRTLSKLISTYADALPKEVSELDQRIHTRFSQTTAA-TGRLASTQPNLQ 785

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +RS   A  G   +  D + IE R+
Sbjct: 786 NIPTRT------------------------AEGKSIRSAFQAPEGHHFISCDYSQIELRI 821

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           +A ++ +   ++AF N  D++  T +  F T + +V+K+QR   K +   + +  G    
Sbjct: 822 MAELSQDPGLLEAFNNDFDVHTHTASLVFETELSEVTKQQRYAAKAVNFGIMFGQGPYGL 881

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HL 483
           AK     A      +  + +       F      ++                      + 
Sbjct: 882 AKEIGVSADEAKQFISNYFKRYPDVQKFMAKCVEDARDKGYSETSFGRRRYLPEMLSSNG 941

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRA 512
            ++      +V   + GTA +++K A   
Sbjct: 942 RIRSGAERISVNSPIQGTAADIIKIAMIK 970



 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 588  MRERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTP 640
             R R+   +++ N  +Q  + DI+   M               ++L +HDE++ E PD  
Sbjct: 941  GRIRSGAERISVNSPIQGTAADIIKIAMIKVADELEKRQLKSKMLLQIHDELLFEVPDDE 1000

Query: 641  YFSVGTLC-SLMTKNP 655
               +  L   +MT  P
Sbjct: 1001 LEIMKELIPQIMTDIP 1016


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/626 (16%), Positives = 195/626 (31%), Gaps = 123/626 (19%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           ++  +   L   L          N+ F+R++FK   GI++    +  T + +       S
Sbjct: 378 KKETVLEALRPILESNKYPKALQNAKFDRLIFK-VQGINLAGVVF-DTMLASYVLNPDDS 435

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L+  + +     +  K L     K    +     T A          EYC  DV 
Sbjct: 436 HNLTELSRKYLDSGILAKSYKQL--SLSKKQTIADLDIPTAA----------EYCGLDVY 483

Query: 169 ATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           AT  +  +L       P     L D E+ L  +   +  +G RI++D + +L   + ++ 
Sbjct: 484 ATYLIVPKLRKELQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKL 543

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           +++++   +       +      L   LF    +      +           + +L  D 
Sbjct: 544 EEIEKQAYQEAGTEF-NLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDH 602

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +         + KL     + L E V     R+         + TGR S      QN+P
Sbjct: 603 PIIDSILEHRTLAKLKSTYVDALPELVHPQTQRIHTDFN-QAITTTGRLSSSNPNLQNIP 661

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                           S  +R   +   G  LV AD + IE R+LA 
Sbjct: 662 IRT------------------------EFSRQIRQAFLPEPGWLLVSADYSQIELRILAH 697

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           ++ E   ++A+    DI+  T    F    I  V+ E+R  GK +   + Y  GA     
Sbjct: 698 LSDEPILVEAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGA---LR 754

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +    ++  +  + ++                                           
Sbjct: 755 FSREMKVNTNKAKEFIERF----------------------------------------- 773

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
              +Q   +L++ L E     + +G   +        R         +  +  S    + 
Sbjct: 774 ---NQQYEKLFEYLEEQKKQAISQGYVTTLLG----RRRYFHFESPSLKALKESPLEDI- 825

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY--DIVL 626
                +   +    +Q +R            +Q  S DI+   M         Y   ++L
Sbjct: 826 --PLDELKKIGQNDAQFLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYRAKLLL 877

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLM 651
            VHDE+V E P   +  +   +   M
Sbjct: 878 QVHDELVFEVPPEEWEELQPQIKQTM 903


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 65/399 (16%)

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            Q +  +    K  +E   +  +    L + E  L  +  ++   G ++D + +  L + 
Sbjct: 427 PQKYAAYLFPLKTILEERIKKEELEFVLFNIETPLIPVLYSMEKWGIKVDKEYLKSLSDE 486

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS--------I 264
             +  KKL+E+I +L      +      L   LF    +      +    +        +
Sbjct: 487 FCERIKKLEEEIYELAGMKF-NLNSPKQLSEVLFERLKLPSGKKGKTGYSTSSLVLQNLL 545

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
            +H  + ++ +   L +L S+      ++ +   ++S  GR+       G + TGR S  
Sbjct: 546 NAHPIVIKILQYRELYKLKSTY-----IDAIPNLINSQTGRVHTKFNPTG-TATGRISSS 599

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +                              +R   IA +G   V  D + 
Sbjct: 600 EPNLQNIPIKS------------------------EEGRKIRRAFIADDGYYFVSLDYSQ 635

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R++A ++ E   I AF  GEDI+  T A+ F  P D+V    R+  K +   + Y  
Sbjct: 636 IELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDDLLRSRAKAVNFGIIYGI 695

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481
              G ++            +  + ++      F D    E+                   
Sbjct: 696 SSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDKTIYEAREKLYVKTLFGRKRYIPEI 755

Query: 482 ---HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +  +++ Y   A+   + GTA +++K A    ++ +
Sbjct: 756 RSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIYKEI 794



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 17/218 (7%)

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           + F     +  + L      ++  +      +  S     +D +   A   ++ G   + 
Sbjct: 618 RAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTA--AEIFGVPEDE 675

Query: 506 VKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
           V    R++ + V   +   ++              A +  +       R K  +   +  
Sbjct: 676 VDDLLRSRAKAVNFGIIYGISSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDKTIYE 735

Query: 565 SRRLVYSDV---KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNA 617
           +R  +Y      +        + ++ +R   Y        +Q  + DI+   M    K  
Sbjct: 736 AREKLYVKTLFGRKRYIPEIRSINKQVR-NAYERIAINAPIQGTAADIIKLAMIEIYKEI 794

Query: 618 TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
            +      I+L +HDE++ E P+           LM K
Sbjct: 795 EEKNLKSRILLQIHDELILEVPEEEM----EFTPLMAK 828


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 81/555 (14%), Positives = 181/555 (32%), Gaps = 96/555 (17%)

Query: 27  QAVITLCAYAWDDEPVKLWDRT--EQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKK 82
            A +   A+   +           ++  +P+     +    +T++ V  N  ++  + KK
Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSID 141
             GI +     I   ++A     P  L N   LA  +  +     E      +  + S+ 
Sbjct: 431 Y-GIRMNYP--IFDILIAHYLINPEYLHNLDFLAKTYLNYRIINTEELIGSKKESQLSVR 487

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLD 191
             P             L  +Y   + +   +L     P+             E  L  + 
Sbjct: 488 QVP-----------LSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVL 536

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             + + G ++D+  +     ++ +  + +++ I +++   I +      +   LF    I
Sbjct: 537 SDMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQISG-KIFNVNSPKMVGEILFDHLKI 595

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRL 305
                   + +   S   +  L K   +           KL     +TL   VS  D ++
Sbjct: 596 IENSKKTKSGQYATSEGILENLKKKHPIVGEILKYRKSKKLLTTYIDTLPTLVSFIDKKI 655

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P +++                            +R
Sbjct: 656 HTTYN-QATTATGRLSSNSPNLQNIPIRDK------------------------EGKEIR 690

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              I  +    + AD + IE R++A ++ +   ++AF NG+DI+    +  F  P+ +++
Sbjct: 691 RVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAEIT 750

Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            + R   K+    + Y     G A+  +         + ++         + D   A + 
Sbjct: 751 CDMRRKAKITNFGIIYGISVFGLAEQLQVSRFIAKELINKYFMIFPDIKNYIDRSIAIAR 810

Query: 482 HLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG---- 516
                                   ++      ++   + G+A +++K A    H+     
Sbjct: 811 KDGYVETIFRRKRFLPDINSRNSVVRKYAERNSINAPIQGSAADIIKVAMNRIHRRLIDN 870

Query: 517 ------VLQLWKDLT 525
                 ++Q+  +L 
Sbjct: 871 DLQSKMIIQVHDELN 885


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 130/368 (35%), Gaps = 58/368 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  +      + + G  +  + +    E +  +  KL+++I + T+    +      L
Sbjct: 492 DIEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDTETEF-NINSPKQL 550

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF    +     ++       +   + +LA +  + R       + KL     + L+
Sbjct: 551 GEILFDRMKMPGGKKTKTG--YSTAADVLEKLAPEYPVVRKVLDYRQLTKLKSTYADGLA 608

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  DGR+ GT      + TGR S      QN+P                         
Sbjct: 609 AFIREDGRIHGTFN-QTITATGRISSTEPNLQNIP------------------------V 643

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +   G  L+ AD + IE RVLA ++G++  I A+   EDI+  T ++ 
Sbjct: 644 RMELGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITASEV 703

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P+++V+  QR   K +   + Y     G ++            + ++ +       F
Sbjct: 704 FHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEALEYINRYFETYPEVKKF 763

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D                       + +S +   +      A+   + GTA +++K A  
Sbjct: 764 LDHLVELGKEQGYVETMFGRRRPIPELKSANFMQRSFGERVAMNSPIQGTAADIIKIAMI 823

Query: 512 AKHQGVLQ 519
              Q + +
Sbjct: 824 RVDQRLRK 831



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M    +          +VL VHDE++ ET      
Sbjct: 797 QRSFGERVAMNSPIQGTAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELE 856

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 857 KVQKVLE 863


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 84/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++        ++  +E ++ 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEDILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             ++        KK LGID     + C       +          L  N+      ++EG
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435

Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           +  +    F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ +++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++        ++  +E ++ 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKAFKEFFENEDILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             ++        KK LGID     + C       +          L  N+      ++EG
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYNLLSLINNYLSKFPNVKEG 435

Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           +  +    F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ D++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 91/533 (17%), Positives = 173/533 (32%), Gaps = 96/533 (18%)

Query: 49  EQSAMPSD-LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           + S + +D ++  L     D     V  N+ ++ ++ +      +         +LA   
Sbjct: 409 QGSNLETDAVVAALTPYWQDRERPKVLQNAKYDWLVLRNY---GVALAGIAFDPMLASYV 465

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             P    N  + L  +     M   +AL+ +    +ID+                   YC
Sbjct: 466 LDPEGKHNL-MTLAQNHLQITMGSYEALVPK--GQTIDAVEIAAVSR-----------YC 511

Query: 164 KRDVEATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             D   T  L   L    D            E  L  +   + +RG RID   + +L + 
Sbjct: 512 GEDAAVTLRLVPVLQAKLDEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQE 571

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           + ++ + L+++   L      +      L   LF   G+      + +L      + + +
Sbjct: 572 LDRDLESLEQEAYTLAGSKF-NLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEK 630

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
           L  D  +     S   + KL     + L   V     R+         + TGR S     
Sbjct: 631 LRDDHPIVEAILSYRTLAKLKSTYVDALPLLVDPRTDRVHTDFN-QTVTTTGRLSSSNPN 689

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                           S  +R   +   G  LV AD + IE 
Sbjct: 690 LQNIPVRT------------------------SFSRRIRRAFVPEPGWLLVAADYSQIEL 725

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA +  E   ++AF  G D++  T         ++V+ E+R + K++   + Y  GA+
Sbjct: 726 RILAHLTQEPVLLEAFQTGGDVHTLTARLLLG--REEVTSEERRLAKIINYGVVYGMGAR 783

Query: 447 VF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYP----- 490
            F       A+     ++ F +   +   F +  +  +         L  +  +      
Sbjct: 784 RFARETGVSATEAEDFIKAFYRRYPAVFGFMEQTRRMAVEQGYVETLLGRRRYFRGLGQL 843

Query: 491 ---------EFAVKDKLIGTACELVKKAWRAKHQ----GVLQLWKDLTEGFAC 530
                      A    + GTA +++K A     Q       +L   + +    
Sbjct: 844 NQRDREGALRAAFNAPIQGTAADIIKIAMVRLEQTLAGRRTRLLLQVHDELVF 896


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 130/377 (34%), Gaps = 57/377 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L    + E+ L  +   +   G R+D+  +  L   +A+E ++L+E++ +L      +
Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L   LF    +  +  ++ T K   S + +  L +   +         + KL  
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L   V    GRL        A+ TGR S      QN+P +               
Sbjct: 546 TYVDPLPSLVHPNTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI
Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           +  T +  F  P + V    R   K +   + Y   A    +            ++++ Q
Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
           +      + +    E                          +++     A    + GTA 
Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760

Query: 504 ELVKKAWRAKHQGVLQL 520
           +L+K A       + ++
Sbjct: 761 DLMKLAMVKLFPRLREM 777



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555
           + G   E V    R   +  +            + QE        VA + R      + +
Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706

Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +   L   R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   
Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766

Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           M        + G  ++L VHDE++ E P      V  L  
Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQAGAEEVAALAK 806


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 191/561 (34%), Gaps = 70/561 (12%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +D E   +    + +  P +L+ +L DET     H++    I  K++   DI  +  +  
Sbjct: 338 YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DIAIENVVFD 393

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           ++LA     PS         +   H  +      +     KG     P D     H+ + 
Sbjct: 394 TMLASYIIDPSR--TIEDVHSVMTHFDQTFVQDDVSVY-GKGKSFHIPEDGVLDKHIASI 450

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                  +  +    E  ++   LS+ E  L L+   +   G   D+D + +++ +I  E
Sbjct: 451 LDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDTLKEMETVIQTE 510

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
             +L E I +       +      L + LF    + ++  ++    T   +L        
Sbjct: 511 LDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAVDVLEKLQNAHP 569

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             D IL     S      +  L + +  DGR+        A +TGR S      QN+P +
Sbjct: 570 IIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSSVDPNLQNIPIR 628

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWI 392
                                         +R    ++     ++ AD + IE RVLA I
Sbjct: 629 ------------------------LEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHI 664

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
            G+    +AF + ED++ TT  K FN   D+V+   R   K +   + Y     G ++  
Sbjct: 665 TGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNFGIVYGISDYGLSQSL 724

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487
                     +  +  +      + D                          S +  ++ 
Sbjct: 725 GITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRG 784

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                A+   + G+A +++K A        +Q  +++ +      Q    +    +  VP
Sbjct: 785 FAERTAMNSPIQGSAADIIKLAM-------VQFHREVQKTSFKA-QLLLQVHDELIFEVP 836

Query: 548 RLVMRRHKRDVHIVLPSSRRL 568
           +  +    + V  ++  + +L
Sbjct: 837 KDEVDEFGKFVEEIMAHALQL 857



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 16/170 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            K+   A + V    R +    + G++     +++             A+R  +      
Sbjct: 686 MKVFNVAADEVTSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKEAQRFIDDYLNHF 742

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
              K  +  ++  +++  Y +       Y+   TS+    R +  +   N  +Q  + DI
Sbjct: 743 PGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAERTAMNSPIQGSAADI 802

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652
           +   M    +          ++L VHDE++ E P       G  +  +M 
Sbjct: 803 IKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMA 852


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 84/502 (16%), Positives = 164/502 (32%), Gaps = 90/502 (17%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCV-----AHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
              +   P+D L  + D TV+        H++    IL ++ LG       +  T + A 
Sbjct: 365 LAGEELQPADKLTRILD-TVLWTKGWVCFHDAKRTDILLRR-LGNKPVRAGF-DTMLAAY 421

Query: 102 TNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                 S L  A L++ +        E       FC  +      D          +   
Sbjct: 422 LLDPSVSNLDLAALSIKYLGQELSPGEDY---RSFCAQA------DIILRLVPVLHEKLA 472

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           E    D+              D E  L  +   +   G ++D + +  +   ++ E  ++
Sbjct: 473 ELNMLDL------------YFDVEMPLLHILADMEFSGVKLDKEYLEAMSVDLSTEIDRI 520

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
             DI +L      +   T  L   LF   G+ ++  ++           +  LA+   + 
Sbjct: 521 TGDIYRLAGEEF-NINSTRQLGTILFEKLGLPVIKKTK--TGYSTDVEVLETLAERHEIV 577

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                   ++KL     + L   ++   G++  T      + TGR S      QN+P + 
Sbjct: 578 ARVLHYRQLVKLKSTYVDGLIPLINPVTGKVHTTFN-QTVTATGRLSSTEPNLQNIPIR- 635

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIA 393
                                        +R   + S  G  ++ AD + IE R+LA ++
Sbjct: 636 -----------------------MEEGRRIRKAFVPSEPGWIILSADYSQIELRILAHLS 672

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           G++  ++AF N EDI+  T A+ F   +++V+ E R+  K +   + Y     G AK   
Sbjct: 673 GDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFGIVYGISDFGLAKNIS 732

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489
                    ++ +         + +     +                             
Sbjct: 733 VSRKEARQYIENYFARYAGIKKYLEETVRLAREQGYVTTLLNRRRYLPDILSPNRNIRSF 792

Query: 490 -PEFAVKDKLIGTACELVKKAW 510
               A+   + G+A +++K A 
Sbjct: 793 GERTAMNTPIQGSAADIIKLAM 814


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 100/571 (17%), Positives = 185/571 (32%), Gaps = 115/571 (20%)

Query: 1   MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M +  +  D ET    PL          QA +   A++        W++T+   +P    
Sbjct: 372 MKQTSVCFDTETTDLDPL----------QAELVGIAFS--------WEKTKGFYVPFPSE 413

Query: 55  ----SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GL 105
                 L++ LR     E +  +  N  ++  +  K    D+  K  +  +++A      
Sbjct: 414 KEEVQKLIEALRPFFEAEEIEKIGQNLKYDIKVLAKY---DVEVKGKLFDTMIAHYLINP 470

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                   LA  +  +     E   LI +  K           +           EY   
Sbjct: 471 DMRHNMDVLAETYLNYTPVSIE--ELIGKKGKNQKSMADVPVDQQT---------EYAVE 519

Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           D + T +L +                + E  L  +   +   G  +D + +  L E +  
Sbjct: 520 DADVTLQLKEHFQKELGEANTQKLFDEIEIPLVQVLADMELEGINLDQEFLGSLSEALNN 579

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +   L++ I +       +      L   LF    +        T +   +   ++ LA 
Sbjct: 580 DIASLEKSIYEEAGEEF-NIGSPKQLGEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAP 638

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           D  + +       + KL     + L   V+   GR+         + TGR S      QN
Sbjct: 639 DHEIVQHVLDYRGLSKLKSTYVDALPAQVNAKTGRVHTDY-MQTVAATGRLSSNNPNLQN 697

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388
           +P +                              VR   +       L+ AD + IE R+
Sbjct: 698 IPIRTER------------------------GRQVRKAFVPRNEDYVLLAADYSQIELRI 733

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           +A ++ E+  +KAF  GEDI+ +T AK FN PID+V++EQR+  K +   + Y     G 
Sbjct: 734 IAALSQEETMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVSAFGL 793

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------------- 484
           +       S     +  + +       +   +   +                        
Sbjct: 794 SNQTDLTRSESKELIDTYYKTYPKLRNYMSEQVDFARENGYVSTVLGRRRYLKDINSSNA 853

Query: 485 -MQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            ++      AV   + G+A +++K A    H
Sbjct: 854 VVRGAAERNAVNAPIQGSAADIIKIAMIKIH 884


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 149/463 (32%), Gaps = 78/463 (16%)

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---------LS 181
           L+A     +  + P    R      W    E        T  L + L P           
Sbjct: 452 LVAYLLDPANTNMPIVAERYLRT-TW---PEDAATRAAITYRLLQDLPPHLDEARRKLYE 507

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E+ L  + + +  RG R+D D +  L E +A     L+ +I +L      + R    L
Sbjct: 508 EVEKPLSAVLKRMEVRGVRLDSDYLRGLSEALAGRIATLEAEIHRLAGREF-AIRSRDQL 566

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+   G+     ++ T K   + S +  L  +  +         + KL     + L 
Sbjct: 567 ETVLYDELGLASGKKTKLTGKRSTAVSALEPLRNEHPIIPALLEYRELEKLRGTYLDPLP 626

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             V+   GRL  T     A+ TGR S      QN+P +                      
Sbjct: 627 NLVNPRTGRLHTTFSQTTAA-TGRLSSLNPNLQNIPIRS--------------------- 664

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA  G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+
Sbjct: 665 ---ELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQ 721

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471
                 D ++  QR   K +   + Y   A           +     +  +         
Sbjct: 722 VLGLAEDAITPNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEAAQFIDVYFNTYPGIRR 781

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                       + +S +  +++     A    + GTA +++K A 
Sbjct: 782 YIERTLDFGREHGYVETLYGRRRYVPELKSQNRVIREAGERLAYNMPIQGTAADIIKIAM 841

Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
               Q         +LQ+  +L         +  +   R V  
Sbjct: 842 VRLDQELDALGARLLLQVHDELLIEAPATQADRVAALTREVME 884



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 17/192 (8%)

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
           A +    MQ  + E A  D    TA +++  A  A      +  K +  G    +     
Sbjct: 697 AIADDPLMQQAFREGA--DIHRRTAAQVLGLAEDAITPNQRRAAKTVNFGVLYGMSAHRL 754

Query: 538 --------ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLM 588
                     A +  +V        +R +   L   R   Y +   G   Y+    SQ  
Sbjct: 755 SNELGIPYAEAAQFIDVYFNTYPGIRRYIERTLDFGREHGYVETLYGRRRYVPELKSQNR 814

Query: 589 RERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643
             R  G +L  N+ +Q  + DI+   M    +     G  ++L VHDE++ E P T    
Sbjct: 815 VIREAGERLAYNMPIQGTAADIIKIAMVRLDQELDALGARLLLQVHDELLIEAPATQADR 874

Query: 644 VGTLC-SLMTKN 654
           V  L   +M + 
Sbjct: 875 VAALTREVMEQA 886


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 165/511 (32%), Gaps = 109/511 (21%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--------LKNACLA 115
           E+V    H++     +      I++ +     T V A      +S        L++  + 
Sbjct: 386 ESVKKYFHDAKQALWMLHHH-SIELKALA-ADTMVSAYLLNPTASNYDINDVALEHLGMV 443

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L        M      I R  +                   +LF +  +R  +       
Sbjct: 444 LPAEGETA-MASRAEAIRRLAQ-------------------KLFEKLAERQED------- 476

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           RL  L+  E  L  +   +   G  +D   +  +   +    + L   I +L      + 
Sbjct: 477 RL--LTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELAGENF-NI 533

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                L   LF    + ++  ++           + +LA++  +  L      + KL   
Sbjct: 534 NSPKQLGPILFEKLKLPVLKKTK--TGYSTDAEVLEKLAEEHEIVALILEYRQMAKLKST 591

Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L+  V    GRL  T      + TGR S      QN+P +                
Sbjct: 592 YTDGLAALVDPQTGRLHSTF-HQTVTATGRLSSAEPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   I    G  ++ AD + IE RVLA ++ ++  + AF  G+DI
Sbjct: 635 --------LETGRKIRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDI 686

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T ++ F  P+D+V+ E R+  K +   + Y     G A+  K         +  +  
Sbjct: 687 HTRTASEVFGVPMDQVTSEMRSRAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFA 746

Query: 465 NVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------AVKDKLIGTAC 503
                  + D    E+         L  +   PE               A+   + GTA 
Sbjct: 747 RCPGVRQYIDRVIKEAKETGYVNTLLNRRRYLPELFSKNFNIRNFGERAAMNTPIQGTAA 806

Query: 504 ELVKKAWRA----------KHQGVLQLWKDL 524
           +++K A               Q VLQ+  +L
Sbjct: 807 DIIKLAMVKISQQLKEQNLSSQMVLQVHDEL 837



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 15/166 (9%)

Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551
           ++ G   + V    R++    + G++    D        V    +             V 
Sbjct: 693 EVFGVPMDQVTSEMRSRAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFARCPGVR 752

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
           +   R +     +       + +    YL    S+    R +G +   N  +Q  + DI+
Sbjct: 753 QYIDRVIKEAKETGYVNTLLNRR---RYLPELFSKNFNIRNFGERAAMNTPIQGTAADII 809

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
              M   ++          +VL VHDE++ + P+    S+  L   
Sbjct: 810 KLAMVKISQQLKEQNLSSQMVLQVHDELIFDAPENEIESLIMLVRQ 855


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 97/558 (17%), Positives = 190/558 (34%), Gaps = 75/558 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S+L     D+T+  ++ +   E +L  K   +DI         +L      PS       
Sbjct: 355 SELKNIFEDKTINKISFDIKEEMVLLDK---LDIDLIGPYDDLMLMHYLIDPSRSSYDLK 411

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD----VEAT 170
            L+ S    +++  ++LI +       +  Y     + +            D    V   
Sbjct: 412 LLSQSYLTYELDSDESLIGK----GAKTKKYAEVDQDDLAKLLASQVNAIEDSRDKVFKN 467

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
              ++ +    + E+ L  +  ++   G+  D  ++  L+  + ++ + +  +I  L   
Sbjct: 468 LAEYEMVDLYENIEKRLARVLASMEIIGFGTDRKILEGLKADLEKQIEAITSEIYDLAGS 527

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +   T  L   LF    + +V  ++           + +L     +         I 
Sbjct: 528 EF-NINSTKQLGEVLFKDLDLPVVKKTKTGF--STDAKVLEKLRDKHPIIEKIERYREIY 584

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL       L  A+  DGR+R T +   AS TGR S      QNLP +            
Sbjct: 585 KLRSTYIEGLENAIDEDGRIRSTFRQNIAS-TGRLSSQEPNLQNLPIKT----------- 632

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R    A  GK L+ AD + IE R+LA +A +     AF  G
Sbjct: 633 -------------DEGRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNRG 679

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T ++ F+TP+D+V+K QR+  K +   + Y     G ++            + +
Sbjct: 680 IDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRPRAKEYIDK 739

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           + ++      + D                       +  S +  ++      A+   + G
Sbjct: 740 YKKSYPQIKEYMDDVVQLARSQGYIETLFKRRRYIPEISSRNFNVRSFGERIALNTPIQG 799

Query: 501 TACELVKKAWRAKHQGVLQLWKD------LTEGFACVVQEGGSISARRVANVPRLVMRRH 554
           TA +++K A    +  + +   D      + +       E     AR +         + 
Sbjct: 800 TAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAAKL 859

Query: 555 KRDVHIVLPSSRRLVYSD 572
           K D+ + +     +  S 
Sbjct: 860 KVDLLVDIGFGESMYESK 877



 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
           +        +       +       V +             +    Y+   +S+    R+
Sbjct: 730 RPRAKEYIDKYKKSYPQIKEYMDDVVQLARSQGYIETLFKRR---RYIPEISSRNFNVRS 786

Query: 593 YGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           +G ++  N  +Q  + DI+   M               I+L +HDEI+ E+ +       
Sbjct: 787 FGERIALNTPIQGTAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESSEKDKEKAR 846

Query: 646 TL 647
            +
Sbjct: 847 DI 848


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 79/512 (15%), Positives = 173/512 (33%), Gaps = 64/512 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I   A A ++     +  T+++     L+Q+L+DE       ++    +        +I
Sbjct: 331 DILGLAIAHNNG--CYYIPTDEALRSEALIQWLKDERKEKWLFDAKRAVVAL---GWKNI 385

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                     +A     PS+  +     + ++H  K        A + KG+    P +  
Sbjct: 386 ELAGSTFDLQMASYLLDPST--SFHEVSDVTKHHRK-GHVHEDEAVYGKGAKRRIPDEKE 442

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              H+          K  VE   +  ++L   ++ E  L ++   +   G ++D++ + +
Sbjct: 443 LGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQLEQ 502

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           + E +    ++L++ I +L      +      L   LF    + ++  ++    T   +L
Sbjct: 503 MGEDLNARLEELEQTIHELAGVSF-NINSPKQLGEILFEKLQLPVIKKTKTGYSTSADVL 561

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                     D IL+           ++ L + V    G++         ++TGR S   
Sbjct: 562 EKLAGQHEIIDHILHYRQLGKLNSTYIDGLLKVVHKGTGKVHTRFN-QALTQTGRLSSTD 620

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383
              QN+P +                              +R   + S     ++ AD + 
Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFVPSEKDWFILAADYSQ 656

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA  A ++  ++AF    D++  T    F+   ++V+   R   K +   + Y  
Sbjct: 657 IELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNFGIVYGI 716

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G ++            ++++  +      + D                         
Sbjct: 717 SDYGLSQNLGITRKEAATFIERYFASYPKVKEYLDHVIDEAREKGYVTTLLKRRRYLPDL 776

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            S +   +      A+   + GTA +++K+A 
Sbjct: 777 TSRNFNQRSFAERTAMNTPIQGTAADIIKQAM 808


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 171/507 (33%), Gaps = 78/507 (15%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-G 104
           D+ E   +  D   +   E +  + HN  ++  +        +P K  +  +++A     
Sbjct: 446 DQAETQRILEDFRPFFESE-IEKIGHNLKYDIKVLSTY---KMPVKGKLFDTMIAHYLIN 501

Query: 105 LPSSLKNACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANHV-QAWQ 157
                    LA  +  +          ++GK  ++       +   Y    A+   Q  Q
Sbjct: 502 PDMRHNMDVLAETYLNYQPISIAELIGKKGKNQLSMRSVPLKEQTEYAVEDADITFQLKQ 561

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           LF        E       +L   +D E  L  +   +   G  ++ D + +L   +  + 
Sbjct: 562 LFTG------ELENGNVTKLF--NDIELPLVSVLTAMEIEGINVNTDFLKELSVALTADI 613

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
            +L++ I +        +     L + LF    +        T +       ++ LAK+ 
Sbjct: 614 DRLEKSIYEQAGEEFNIA-SPKQLGIVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEH 672

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            + +         KL     + L   V+   GR+         + TGR S      QN+P
Sbjct: 673 DIIKDIQEYRQYKKLQSTYVDALPNEVNPKTGRIHTQY-MQAVAATGRLSSNNPNLQNIP 731

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
            +                              VR   +       L+ AD + IE R++A
Sbjct: 732 IRTAR------------------------GREVRKAFVPRDENHVLLAADYSQIELRIIA 767

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            ++ E+  I AF NGEDI+ +T AK FN P+++V+++QR+  K +   + Y     G + 
Sbjct: 768 ALSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVSAFGLSN 827

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWM 485
                 S     +  + +       +                        +   S +  +
Sbjct: 828 QTDLSRSEAKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAVV 887

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA 512
           ++     AV   + G+A +++K A   
Sbjct: 888 RNGAERNAVNAPIQGSAADIIKLAMIN 914


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 84/533 (15%), Positives = 181/533 (33%), Gaps = 85/533 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           +   L DE +  + +    + +  K      + +  DI    ++  S  + +  +  S+ 
Sbjct: 358 IRTILEDEDIEKIGYEMKADYVALKPYGIDLRNMAFDIAIAEYVIDSKTSTSYDID-SIS 416

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEA 169
           +  +          + +G   +            Y     +  + ++    +    D   
Sbjct: 417 SKYIYKTIMSKEDLLGKGAKALDYRQVDLEKLDQYVSGMLSTIIGSYPKMKKIIDED--- 473

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +L        D E  L  +   +   G  +D D++  L +   +   K +++I +L  
Sbjct: 474 --QLSMLFY---DVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKTEKNIHELAG 528

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF   G+ ++  ++    +      + +L     +  + +   ++
Sbjct: 529 QDF-NVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAE--VLEKLRDKHEIINMITEYRSV 585

Query: 290 LKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +KL     + +   V+  DGR+  +      + TGR S      QN+P +          
Sbjct: 586 VKLKSTYVDGIEALVNAKDGRIHSSFN-QTITTTGRISSTDPNMQNIPVRT--------- 635

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +   LV AD + +E RVLA ++ +   I+AF 
Sbjct: 636 ---------------DMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFN 680

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +GEDI+  T ++ FN   ++V+ E R+  K +   + Y     G A+            +
Sbjct: 681 SGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIYGKSDFGLAQDLNISQKKAKEYI 740

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLW-------MQDQYPEF--------------AVKDKL 498
           + +    ++   F D   +E+            +   PE               A+   +
Sbjct: 741 ESYFNKYETIKAFMDHIVSEAEEKGYSTTIFNRRRYIPEIKSSNFVEKNRGKRAAMNAPI 800

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            G+A +++K A             K + +LQ+  +L             +  R
Sbjct: 801 QGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATADELTQVEVLLR 853



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+   M        + G    ++L VHDE++ E        V  L
Sbjct: 800 IQGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATADELTQVEVL 851


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 138/386 (35%), Gaps = 65/386 (16%)

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
              ++ ER L  +   +   G+++D D +L+  + I  +   L++ I ++      +   
Sbjct: 447 FVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAGEWF-NINS 505

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L   LF    + ++  ++    T   +L           LIL+    +         
Sbjct: 506 PKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQG 565

Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L +A++   GR+  T    G + TGR +      QN+P +                    
Sbjct: 566 LLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY------------------- 605

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T 
Sbjct: 606 -----DEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTA 660

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           A+ F   ID V+ E R+  K +   + Y     G A+  K         + ++ +     
Sbjct: 661 AEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKV 720

Query: 470 STFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             + D                      +  +S +   ++     A+   + G+A +++K 
Sbjct: 721 KEYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYAERIAMNSPIQGSAADIMKL 780

Query: 509 AWRAKHQG----------VLQLWKDL 524
           A    +Q           +LQ+  +L
Sbjct: 781 AMIKVYQKLKENNLKSKIILQVHDEL 806



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 15/165 (9%)

Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVM 551
           ++ G   + V    R++    + G++    D        + ++  +    R       V 
Sbjct: 662 EVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
                 V     +   L   + +    Y+    S     R Y  ++  N  +Q  + DI+
Sbjct: 722 EYLDNIVKFARDNGYVLTLFNRR---RYVKDIKSANRNARNYAERIAMNSPIQGSAADIM 778

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              M    +          I+L VHDE++ E P      V  +  
Sbjct: 779 KLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVK 823


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 125/368 (33%), Gaps = 58/368 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L      +   G  ++ + +    + +     +L+++I  +      +      L
Sbjct: 473 EIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGNRIVELEKEIYDMAGETF-NINSPKQL 531

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
            + LF    +     ++       +   + +LA +  +         + KL     + L+
Sbjct: 532 GVILFEKLEMPHAKKTKTG--YSTAADVLDKLAPEYPIVAKILEYRQLTKLKSTYADGLA 589

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  DGR+ G       + TGR S      QN+P                         
Sbjct: 590 TFIGPDGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------V 624

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +   G   V AD + IE R+LA  +G++  I+A+    DI+  T ++ 
Sbjct: 625 RMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQV 684

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P D+V+  QR   K +   + Y     G ++            ++ + +      TF
Sbjct: 685 FHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAARYIEHYFETYPGIKTF 744

Query: 473 EDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAWR 511
            D   A++                       +MQ  +    A+   + GTA +++K A  
Sbjct: 745 LDQCVADAKEKGYAVTLFGRRRPVPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMI 804

Query: 512 AKHQGVLQ 519
                + +
Sbjct: 805 RVSDEMKK 812


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 132/360 (36%), Gaps = 55/360 (15%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +   G ++D + +    E + ++  ++ ED+ +   G   + R    L  
Sbjct: 473 ELPLIPVLADMESAGVKLDAEALADFLEEVQKDLDRITEDVYREAQGPF-NIRSAQQLGD 531

Query: 244 YLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            LF    + +   + G    T + +L   +      D +L            L  L   +
Sbjct: 532 VLFNRLKLPVSGKTRGGQASTSQDVLEKLSGHHPVVDALLEFRKLEKLRSTYLEPLPRLM 591

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DGR+R T     A+ TGR S      QN+P                          G 
Sbjct: 592 GGDGRIRTTFNQL-ATATGRLSSSNPNLQNIP------------------------VRGA 626

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R+C  A  GKKL+ AD + IE RVLA ++ ++  + AF  G DI+  T +  F+ 
Sbjct: 627 LGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLFDA 686

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474
           P  +++ +QR   K +   L Y  G    A+  K   S     + ++ + ++    F + 
Sbjct: 687 PPSEITPDQRRNAKTINFGLIYGMGPQKLAQELKIPLSEAKAFMARYFERLQGLKHFYEN 746

Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                   ++     +      A+   + G+A +++K A  A H
Sbjct: 747 VEEMAREQGYVTTLAGRRRPLPDIQAESQQARSLARRQAINTLIQGSAADIIKLAMLAVH 806


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 86/519 (16%), Positives = 170/519 (32%), Gaps = 70/519 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNAC 113
             ++L D  +  ++ +   + IL        +          LA           L +  
Sbjct: 361 FRKWLEDGDLPKISADLKRDSILLDHQ---GLTLAGVTFDVGLAAYLVDVEKIKDLTSLA 417

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L+    +   E        + KG   + P +   A H+       +     +    + 
Sbjct: 418 TYLDLGIQVQLDEVV------YGKGVKQALPENERLAQHLADKVSLLDQAVAPLTQQLDD 471

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                   D E  L  +   +  RG  +D+  + ++ +L+    ++L+ +I  L      
Sbjct: 472 LGMTQLYQDMEFPLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQAF- 530

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF   G+ ++  ++    T   +L            +L     +     
Sbjct: 531 NPNSPKQLGEILFERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGT 590

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L  L + + +DG++         ++TGR S      QN+P +                 
Sbjct: 591 YLAGLPKFIQADGKIHTRFV-QTLTQTGRLSSADPNLQNIPIR----------------- 632

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   + S  G +L  AD + IE RVLA I+G+    +AF  G+DI+
Sbjct: 633 -------MEEGRKIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIH 685

Query: 410 VTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
             T  + F    D+ V+ + R   K +   + Y     G ++            + ++  
Sbjct: 686 AATARRVFGLAEDEAVNSDMRRQAKAVNFGIVYGISDYGLSQNLDMPRKEAKAFIDRYLA 745

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
                STF     A++                      +  ++      A+   + GTA 
Sbjct: 746 EYPGISTFMQEIVAQAKKDGYVSTLWGRRRALPDIYSSNFNLRSFAERTAMNTPIQGTAA 805

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           +++K A  A  Q + Q  +DL       V +   + A +
Sbjct: 806 DIIKVAMVALDQAIRQ--RDLQARLLLQVHDELILEAPQ 842



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M    +          ++L VHDE++ E P      +  L   +M
Sbjct: 800 IQGTAADIIKVAMVALDQAIRQRDLQARLLLQVHDELILEAPQEEIAILEELVPEVM 856


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 115/677 (16%), Positives = 214/677 (31%), Gaps = 153/677 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--------DRTEQSAMP-S 55
            +D ET S  P           QA +      W +   +L         + ++ + +P  
Sbjct: 393 ALDTETTSLNPF----------QAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPLD 442

Query: 56  DLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
            +L  L              N+ ++R++  +     +P    +  ++LA    L  +   
Sbjct: 443 QVLGALAPWLSSAAHPKTLQNAKYDRLILLRH---GLPLAGVVMDTLLADY--LRDANAK 497

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L L    +   +    + +           P     +           YC  DV  T 
Sbjct: 498 HGLELLAQRNFGFLPTSYSEL----------VPKGANFSAVPM--AQAALYCGMDVHVTY 545

Query: 172 ELFKRLI--------PLS----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            L   L         PL+      E  L  +   +   G RID D + +L   +    ++
Sbjct: 546 RLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKATLER 605

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+ D  +        +     L   LF   G+D     +         + + +L     +
Sbjct: 606 LESDAKEAAGTDFNLA-SPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLEDAHPV 664

Query: 280 NRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L      + KL     + L   + +  GR+         + TGR S      QN+P +
Sbjct: 665 VPLVLEHRTLSKLKSTYVDALPALMEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVR 723

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                      S  +R   +   G  L+ AD + IE R+LA ++
Sbjct: 724 T------------------------EFSRRIRKAFLPEAGWTLISADYSQIELRILAHLS 759

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           GE+  +KA+ +G+D++  T    F+   D+V+ ++R +GK +   + Y  G + F   A 
Sbjct: 760 GEEVLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLGKTINFGVIYGMGVQRF---AR 814

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+   +  + +                   + +YP+     +L               
Sbjct: 815 ETGVSQAEAKEFLSK----------------YKQRYPKVFAFLELQERLA---------- 848

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                     L+ G+   +       A   + + R +    K  + I L  +RR      
Sbjct: 849 ----------LSRGYVETILGRRRPFAFDPSGLGRHL---GKDPLEIELEVARR------ 889

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                      +Q +R            +Q  S DI+   M    +          ++L 
Sbjct: 890 -------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQQRLTESALPARLLLQ 936

Query: 628 VHDEIVSETPDTPYFSV 644
           VHDE+V E       +V
Sbjct: 937 VHDELVLEAAPEALETV 953


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 85/557 (15%), Positives = 176/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++      L ++  +E ++ 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LAQEEENIKALKEFFENEDILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL--TKME 126
             ++        KK LGI+     + C       +          L  N+       K  
Sbjct: 377 NGYSIKNALTALKK-LGIEFKGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKDG 435

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E   +   F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ D++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 106/609 (17%), Positives = 194/609 (31%), Gaps = 100/609 (16%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDET 65
           D ET S   L        AE   I+ C  A     V    D+ E + +      +  +E 
Sbjct: 365 DTETTSVNALE-------AELVGISFCWSAHKGYYVPFPTDKVEATKLLETFRPFFENER 417

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           +  V  N  ++  + +    I++    +  T +               L+  +  +    
Sbjct: 418 IGKVGQNLKYDLKVLQNY-NIEVRGALF-DTMIAHYLLNPDMRHNMDILSETYLNYTPIA 475

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL---FKRLIP--- 179
            E   LI +              R+          EY   D + T +L   FK  +P   
Sbjct: 476 IES--LIGK----------GKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFKEEMPKVN 523

Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                +D E  L  +   +   G  +D+  + +  + +  +  +L+  I +        +
Sbjct: 524 AEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQAGESFNLA 583

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAIL 290
                L   LF    ID       T +   S   +   A        IL           
Sbjct: 584 -SPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILEWRQVQKLKST 642

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L   V+   GR+  T      + TGR S      QN+P +                
Sbjct: 643 YVDALPLEVNKLTGRVHTTY-MQTVAATGRLSSNNPNLQNIPIRT--------------- 686

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         VR   IA      L+ AD + IE R++A ++ E   I +F   EDI
Sbjct: 687 ---------PRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDI 737

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           + +T AK F+ P+++V++EQR+  K +   + Y     G +       S     +  +  
Sbjct: 738 HRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLSRSESKELIDTYYA 797

Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
              +   +                            S +  ++      AV   + G+A 
Sbjct: 798 TYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNAVNAPIQGSAA 857

Query: 504 ELVKKAW-RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           +++K A  R +H+ + Q             +    +    V +VP+  +   K  +   +
Sbjct: 858 DIIKIAMIRIQHELIRQ---------QLQTRMLLQVHDELVFDVPKTELNIVKPLIKEAM 908

Query: 563 PSSRRLVYS 571
            S+  L   
Sbjct: 909 ESAFNLAVP 917


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 89/487 (18%), Positives = 162/487 (33%), Gaps = 79/487 (16%)

Query: 94  ICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               ++A     P   +      A   L       K   GK    +  K   +    DC 
Sbjct: 418 YFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKED-EKKAVDCA 476

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                 AW+      ++  E       R     D E  L  +   + + G R D   + +
Sbjct: 477 CYEVYTAWKSKPVLLQKLKEMNMLTLYR-----DIELPLVFVLYDMENEGIRADGIKLKE 531

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + +A    +L++ I +       +      L + LF   G+     ++       +  
Sbjct: 532 YGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTK--TGYSTAAD 588

Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA +  +         + KL     + LS  ++SDG++  TL     + TGR S  
Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLN-QTITATGRLSST 647

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +                              +R   +   G   V +D + 
Sbjct: 648 EPNLQNIPIR------------------------IELGKLIRKVFLPEEGDLFVDSDYSQ 683

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA ++G++  I+AF NG+DI+ +T +  F+TP D+V+  QR   K +   + Y  
Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGI 743

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481
              G +             +  +         F D    ++                   
Sbjct: 744 SAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPEL 803

Query: 482 --HLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGF 528
               +MQ Q+    A+   + GTA +++K A    H            +LQ+  +L    
Sbjct: 804 NSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIET 863

Query: 529 ACVVQEG 535
               ++ 
Sbjct: 864 KEAEKDK 870


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 87/525 (16%), Positives = 176/525 (33%), Gaps = 86/525 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114
           L   L D+ V+ V  N  ++  + ++  GI++               G  L     +   
Sbjct: 403 LKPLLEDDAVLKVGQNLKYDMTVLRRH-GIEVVPYDDTIVMSFDLEAGKSLSGHGMDEAA 461

Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
             +        ++    GK  I+        +  Y    A+  ++ W+ F        E 
Sbjct: 462 RQHLGHECISFKDVVGTGKNQISFAEVPLPRATEYAAEDADVTLRLWKRFKARIAN--EG 519

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T  +++        +R L  +   +  +G ++D + + +L          L+ +I ++  
Sbjct: 520 TNRVYEL------VDRPLVGVIAKMEHQGIKVDREALSRLSAEFTAGIAALETEIHEIAG 573

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSH--SNITQLAKDLILNRLA 283
               +   T  L   LF   G          +  T  +IL    +    +A  ++  R  
Sbjct: 574 QPF-AIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKAQGAPIAAKVLEWRQL 632

Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           S   +    + L   ++ D GR+  +    GA +TGR S      QN+P +         
Sbjct: 633 SKLKST-YTDALQAQINKDSGRVHTSYSLTGA-QTGRLSSTDPNLQNIPIRT-------- 682

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G  ++ AD + IE R+ A +A      +AF
Sbjct: 683 ----------------EVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAF 726

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
           A GEDI+  T  + F     +V++E R   K +  A+ Y     G A   +  A      
Sbjct: 727 AAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYGISRWGLAGRLEISADEAQDM 782

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDK 497
           + ++ +     S + +    ++                          +      A+   
Sbjct: 783 ISRYYERFPGISIYINETIEKARERGYTETLFGRKTWFPRIKASIQHERQGAERAAINAP 842

Query: 498 LIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEG 535
           + GT+ +++K+A       +       +++   + +     V EG
Sbjct: 843 IQGTSADIIKRAMVRMGPALEAAGLSGVRMLLQVHDELVFEVPEG 887


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 140/434 (32%), Gaps = 69/434 (15%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           + W++ GE           L+       + ER L  +   +   G R+D+  +  L   +
Sbjct: 414 ELWRILGERLAG----EEALWWLYR---EVERPLAGVLAEMEHAGVRVDVAYLEALSAEL 466

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            +E   ++ ++ +L      +      L + L+   G+     ++ T +   S + +  L
Sbjct: 467 GREIAAIEAEVHRLAGRAF-NLNSRDQLEVILYDELGLTPTRRTQKTGRRSTSAAALEAL 525

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
                +     +   + KL     + L   V    GR+       G + TGR S      
Sbjct: 526 VGAHPIVERILAYRELSKLKGTYLDPLPRLVHPATGRIHTRYHQTG-TATGRLSSSDPNL 584

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   +A  G  LV AD + IE R
Sbjct: 585 QNIPVRT------------------------EVGRRIRRAFVAEPGYVLVAADYSQIELR 620

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++   + F    DI+  T +  F  P + V   +R   K +   + Y      
Sbjct: 621 VLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEAVDPFRRRAAKTVNFGVLYGMSPHR 680

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
             +      +     +Q++ ++      + +                          S +
Sbjct: 681 LSRELGIEYAEAERFIQRYFESYPRVQAYIERTLEQAREKGYVETLFGRRRYIPDIRSRN 740

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL-----TEGFACVVQEGGS 537
             +++     A    + GTA +L+K A       +  L   L      E      QE   
Sbjct: 741 RNVREAAERMAFNMPVQGTAADLMKLAMVKLAPEIRSLGARLILQVHDELVLEAPQERAE 800

Query: 538 ISARRVANVPRLVM 551
             AR V  V     
Sbjct: 801 AVARVVREVMEGAW 814



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
           VQ  + D++   M          G  ++L VHDE+V E P     +V  +   +M    +
Sbjct: 756 VQGTAADLMKLAMVKLAPEIRSLGARLILQVHDELVLEAPQERAEAVARVVREVMEG--A 813

Query: 657 WAKGLPLKAE 666
           WA  +PL+ E
Sbjct: 814 WALDVPLEVE 823


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++        ++  +E ++ 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEAILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             ++        KK LGID     + C       +          L  N+      ++EG
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435

Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           +  +    F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ D++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/505 (17%), Positives = 165/505 (32%), Gaps = 82/505 (16%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
            +      +  +E +  V  N  ++  + +   G+++    +  T +             
Sbjct: 400 KLIEQFRPFFENEQIAKVGQNLKYDLKVLQNY-GVEVQGALF-DTMIAHYLLNPDMRHNM 457

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L+  +  +     E   LI +              R+          EY   D + T 
Sbjct: 458 DILSETYLNYTPIAIES--LIGK----------GKAQRSMRTVPIDEVKEYAVEDADVTW 505

Query: 172 EL---FKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           +L   F+  +P        +D E  L  +   +   G  +D+D + +  + +  +  +L+
Sbjct: 506 QLKNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLE 565

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL---- 277
             I +        +     L   LF    ID       T +   S   +   A       
Sbjct: 566 TAIAQQAGETFNLA-SPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVA 624

Query: 278 -ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            IL            ++ L   V+   GR+  T      + TGR S      QN+P +  
Sbjct: 625 DILEWRQVQKLKSTYVDALPLEVNKSTGRVHTTY-MQTVAATGRLSSNNPNLQNIPIRT- 682

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       VR   IA      L+ AD + IE R++A ++ 
Sbjct: 683 -----------------------PRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSE 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           E   I++F +GEDI+  T AK FN P+++V++EQR+  K +   + Y     G +     
Sbjct: 720 EHNMIESFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTDL 779

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489
             S     +  +     +   + +                          SH+  ++   
Sbjct: 780 SRSESKELIDTYYATYPNLRNYINRQIEFAREHGYVETILGRRRYLPDIHSHNQVVRGGA 839

Query: 490 PEFAVKDKLIGTACELVKKAWRAKH 514
              AV   + G+A +++K A    H
Sbjct: 840 ERNAVNAPIQGSAADIIKIAMIRIH 864


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/458 (17%), Positives = 152/458 (33%), Gaps = 67/458 (14%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              +VLA   GL  +  +  + L +    +     + +  R+     +   +    +  +
Sbjct: 356 KDLAVLALREGLDLAPGDDPMLLAYLLDPSNTTP-EGVARRYGGEWTEDAAHRALLSERL 414

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
               L     +          K L    + E+ L  +   +   G R+D+  +  L   +
Sbjct: 415 HRNLLKRLEGEE---------KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLEL 465

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A+E ++L+E++ +L      +      L   LF    +  +  ++ T K   S + +  L
Sbjct: 466 AEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEAL 524

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +         + KL     + L   V    GRL        A+ TGR S      
Sbjct: 525 REAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNL 583

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   +A  G  LV  D + IE R
Sbjct: 584 QNIPVRT------------------------PLGQRIRRAFVAEAGWALVALDYSQIELR 619

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445
           VLA ++G++  I+ F  G+DI+  T +  F  P + V    R   K +   + Y   A  
Sbjct: 620 VLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHR 679

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484
             +            ++++ Q+      + +    E                        
Sbjct: 680 LSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARV 739

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             +++     A    + GTA +L+K A       + ++
Sbjct: 740 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLREM 777



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555
           + G   E V    R   +  +            + QE        VA + R      + +
Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706

Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +   L   R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   
Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766

Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           M        + G  ++L VHDE++ E P      V  L  
Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 133/383 (34%), Gaps = 68/383 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  +D   + +  + +A    +L+  I +L      +      L
Sbjct: 481 DIEMPLVFVLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELAGTKF-NINSPKQL 539

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF    +     ++       +   + +LA +  +         + KL     + L+
Sbjct: 540 GTVLFEDMKLPSGKKTKSG--YSTAADVLEKLAPEYPVVAKILEYRQLTKLKSTYADGLA 597

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  DGR+ G       + TGR S      QN+P                         
Sbjct: 598 VYILEDGRIHGHFN-QTITATGRISSTEPNLQNIP------------------------V 632

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +   G   + AD + IE R+LA ++ +D  I A+   +DI+  T ++ 
Sbjct: 633 RMEIGRQIRKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQV 692

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P+D+V++ QR+  K +   + Y     G ++            ++Q+         F
Sbjct: 693 FHVPLDEVTRTQRSNAKAVNFGIIYGISSFGLSQDLSISRKEASEYIEQYFATYPHIKEF 752

Query: 473 EDWEQAESH--------------------HLWMQDQY-PEFAVKDKLIGTACELVKKAWR 511
            D   A +                       +MQ Q+    A+   + G+A +++K A  
Sbjct: 753 IDGLVASAKKNGYSTTMFGRRRPVPELNSSNFMQRQFGERIAMNSPIQGSAADIIKIAMI 812

Query: 512 A----------KHQGVLQLWKDL 524
                      K + +LQ+  +L
Sbjct: 813 NVSRALKDNNLKSKMILQVHDEL 835


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/465 (15%), Positives = 146/465 (31%), Gaps = 77/465 (16%)

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L  S        GK  I      S+      C        ++     CK+      E 
Sbjct: 283 EYLGLSLEKKIDLFGKKSIREADDKSVVQYACKCAFV----CFKAEPLICKK-----LEK 333

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            + L    + E  L  +  ++   G     D +    + +     +L++ I +       
Sbjct: 334 LQMLDLFYNIEMPLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYEAAGVEF- 392

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L   LF   G+     ++       +   + +LA D  +         + KL 
Sbjct: 393 NINSPKQLGEILFERLGLPAEKKTKSG--YSTAADVLEKLAPDYPIVADILEYRGLAKLK 450

Query: 293 ----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               + L+  +  DGR+  +      + TGR S      QN+P +               
Sbjct: 451 STYADGLAAYIEEDGRIHTSFN-QTITATGRISSTEPNLQNIPMRT-------------- 495

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +         AD + IE R+LA ++ +   I A+  G+DI
Sbjct: 496 ----------ELGRLIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDI 545

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T +K F+ P ++V+  QR   K +   + Y     G ++            + ++ +
Sbjct: 546 HGITASKVFHVPFEEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISVKEAKEYMDKYFE 605

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +++                       + ++ +  M+      A+   + GTA 
Sbjct: 606 TYPGVKAYQERVIADAKEKGYSLTMFGRRRPIPELKASNYMMRQFGERVAMNAPIQGTAA 665

Query: 504 ELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSI 538
           +++K A    +            +LQ+  +L        +E  + 
Sbjct: 666 DIMKIAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEEEKVTA 710



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYS---DVKGDCSYLNTATSQLMRERTYGGKLT 598
           +       V    +R +         L          +    N    Q      +G ++ 
Sbjct: 602 KYFETYPGVKAYQERVIADAKEKGYSLTMFGRRRPIPELKASNYMMRQ------FGERVA 655

Query: 599 ENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            N  +Q  + DI+   M N        K    ++L +HDE+V ET          + +L+
Sbjct: 656 MNAPIQGTAADIMKIAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEE---EKVTALL 712

Query: 652 TKNPSWAKGL--PLKAE 666
           T+    A  L  PL AE
Sbjct: 713 TQEMERAADLSVPLLAE 729


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++        ++  +E ++ 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEAILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             ++        KK LGID     + C       +          L  N+      ++EG
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435

Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           +  +    F K                +                         + D E  
Sbjct: 436 EEDLVGITFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ D++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 129/674 (19%), Positives = 217/674 (32%), Gaps = 146/674 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRT--EQSA----MPSDLL 58
           D ET S  PL           A +     AW  EP  V        +       +  DLL
Sbjct: 401 DTETDSLDPLV----------ANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLL 450

Query: 59  -QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L +     V  N+ F+R +        I     +  ++LA     P          N
Sbjct: 451 GEILGNAIYPKVLQNAKFDRRVLAHH---GIELGGVVLDTMLASYVLQPE------ETHN 501

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            ++   +   G   ++    G       D T A+     +  G+YC  D  AT  L  +L
Sbjct: 502 LTDLCRRYNLGLVALSYKDLGLKK----DQTIADLPL--ETAGQYCGLDCYATYLLASKL 555

Query: 178 ------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                  P     L + E+ L  +   + DRG RID D +  L + +A+    ++    +
Sbjct: 556 QKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYE 615

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                   S     L   LF   G+D     +        H+ + +L  D  +       
Sbjct: 616 AAGESFNLS-SPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEH 674

Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L E V+    R+         + TGR S      QN+P +       
Sbjct: 675 RTLAKLKSTYVDALPELVNGQTQRIHTDFN-QAVTSTGRLSSSNPNLQNIPIRS------ 727

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +      LV AD + IE R+LA ++ E   ++
Sbjct: 728 ------------------DFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQ 769

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A+ + +D++  T    F    + ++  +R +GK +   + Y  GA+ F   A   G+   
Sbjct: 770 AYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGAQRF---ARETGISAV 824

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-VKDKLIGTACELVKKAWRAKHQGVLQ 519
           +  + +                      +  +A V D L     E + K +     G  +
Sbjct: 825 EGREFID-------------------RYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRR 865

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
            +  +TE                                 +   +   L   DVK     
Sbjct: 866 YFNFVTEALR-----------------------------QLRGKTVTELDLVDVK----- 891

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYDIVL--TVHDEIVSE 635
           +N   +QL+R            +Q  S DI+   M    K    Y   +   VHDE++ E
Sbjct: 892 MNYNDAQLLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLLQVHDELIFE 945

Query: 636 TPDTPYFSVGTLCS 649
            P   +  +  L  
Sbjct: 946 MPPEEWEELAPLIQ 959


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/692 (17%), Positives = 212/692 (30%), Gaps = 170/692 (24%)

Query: 5   FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQ 59
            ID ET S  P     VG+             +  + + +         +       + Q
Sbjct: 388 AIDTETTSLNPFKAELVGLG----------FCWGENLDDIAYIPLGHNSQGELKDQSIRQ 437

Query: 60  YLRDETVM-------------CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
            L  + V+              V  N+ ++R++F   L   IP +  +  ++LA      
Sbjct: 438 QLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLIF---LHNGIPLEGVVMDTLLADYLSNS 494

Query: 107 S---SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
           +   SL         F+    K   GK     F    ID+                   Y
Sbjct: 495 TNKHSLDEIAKREYGFTPINFKELVGKGET--FKDVDIDTA----------------SIY 536

Query: 163 CKRDVEATRELFKRLIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           C  DV  TR+L  R+              L   E+ L  +   +  RG  ID+  + +L 
Sbjct: 537 CGMDVYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELS 596

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           + + Q  K L+E   K       +      L   LF    +D     +         + +
Sbjct: 597 KELNQTLKGLEEQAYKSAGFEF-NLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVL 655

Query: 271 TQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324
            +L  D  L  L      + KL     + L + V +  GR+         + TGR S   
Sbjct: 656 ERLEADHPLVPLLVEHRTLSKLVSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSN 714

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P +                           S  +R   +     KL+ AD + I
Sbjct: 715 PNLQNIPIRT------------------------EFSRRIRKAFLPQENWKLISADYSQI 750

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA ++GE+   +A+ NG+D++  T         + ++  +R +GK +   + Y  G
Sbjct: 751 ELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYGMG 808

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           A+                                             FA    L  +  +
Sbjct: 809 AQ--------------------------------------------RFARSTGLNQSEAK 824

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVL 562
                ++ ++  V    +               +  RR  N  +  + R      ++I L
Sbjct: 825 DFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGRRRYFNFDKNGLGRLLGSDPMNIDL 884

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
             +RR                 +Q +R            +Q  S DI+   M        
Sbjct: 885 KRARRA-------------GMEAQQLRAAANAP------IQGSSADIIKIAMVQLATKLK 925

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                 +++L VHDE+V E   +    V  + 
Sbjct: 926 VSGVAANLLLQVHDELVLEVEPSVIEEVKNIV 957


>gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 504

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 126/415 (30%), Gaps = 77/415 (18%)

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T +L   L              D E  L  +   I   G  +D + + +   
Sbjct: 73  YACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSA 132

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
               + ++++++I +L       +     +   LF    I        T + + S   + 
Sbjct: 133 HFTAQMEQIEKEIYELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLE 191

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
            L     +         + KL     + L   ++   GR+  +      + TGR S    
Sbjct: 192 SLRHKHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFN-QTVTATGRLSSSNP 250

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                              +R   I   G     AD + IE
Sbjct: 251 NLQNIPIR------------------------DENGKEIRKAFIPDEGCLFFSADYSQIE 286

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            R++A ++ +   I AF +  DI+  T AK +   +  V  + R   K     + Y    
Sbjct: 287 LRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV 346

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480
            G A+            +  + +       + D                          S
Sbjct: 347 FGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINS 406

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
            +  ++      A+   + G+A +++K A    +Q           +LQ+  +L 
Sbjct: 407 RNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 461


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/557 (15%), Positives = 176/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+               Y   +  +K  +  ++        ++  +E ++ 
Sbjct: 329 EKYSTIEIDKI------------FINYDEKNYLIKFKELVKEEDNIKAFKEFFENEDILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             ++        KK LGID     + C       +          L  N+      ++EG
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435

Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           +  +    F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ D++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRREAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 130/377 (34%), Gaps = 57/377 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L    + E+ L  +   +   G R+D+  +  L   +A+E ++L+E++ +L      +
Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L   LF    +  +  ++ T K   S + +  L +   +         + KL  
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L   V    GRL        A+ TGR S      QN+P +               
Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI
Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           +  T +  F  P + V    R   K +   + Y   A    +            ++++ Q
Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
           +      + +    E                          +++     A    + GTA 
Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760

Query: 504 ELVKKAWRAKHQGVLQL 520
           +L+K A       + ++
Sbjct: 761 DLMKLAMVKLFPRLREM 777



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555
           + G   E V    R   +  +            + QE        VA + R      + +
Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706

Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +   L   R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   
Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766

Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           M        + G  ++L VHDE++ E P      V  L  
Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/557 (15%), Positives = 175/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++        ++  +E ++ 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEDILK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL--TKME 126
             ++        KK LGID     + C       +          L  N+       K  
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKDG 435

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E   +   F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ D++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 179/509 (35%), Gaps = 82/509 (16%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS 107
           E + +   L  +   E +    +N   +        GI I    + +  +      G   
Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISYDLALAEHLTNGGGKI 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCK-- 164
           S ++  +   F+E             RF K   +S  P         Q +  F  Y    
Sbjct: 407 SFQSLLVNHGFTETAH----------RFAKEWGNSGLPIGRLPEQPEQYFGEFVAYLPII 456

Query: 165 RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           +D    E  R+    +  LSD E  L  +  ++   G  +D++ +  L+ L   E   L 
Sbjct: 457 KDAILEEINRKNLNHI--LSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLT 514

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-----HSNITQLAKD 276
           E+I  L+     + +    L   L+   G+  +D ++ T   +L      H  I +L   
Sbjct: 515 EEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLAF 573

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             + +L S+      +  L + V S   R+  +    GA  TGR +      QN+P +  
Sbjct: 574 RTIEKLLSTY-----VKALPKQVDSHTQRIHPSFDQTGAV-TGRLACRDPNLQNIPIRSE 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAG 394
                                       +R    ++      + AD + IE R LA ++ 
Sbjct: 628 R------------------------GILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +   + Y     G AKV K 
Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVLKI 723

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------------HHLWMQDQYP 490
                   +Q +       + F +    ++                         +    
Sbjct: 724 SIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEFPGSRAASG 783

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            FAV  ++ G+A EL+K A     Q + Q
Sbjct: 784 RFAVNTRIQGSAAELIKLAMLDISQAIKQ 812


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 115/655 (17%), Positives = 217/655 (33%), Gaps = 136/655 (20%)

Query: 33  CAYAWDDEPVKLWDRTE------QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFK 81
           C +   +  V             +  +P     S L + L          N+ F+R++FK
Sbjct: 410 CCWGTGENDVAYIPLGHNITSNLEKNLPLNTVLSTLEKILVSGDYPKTFQNAKFDRLIFK 469

Query: 82  KTLGIDIPSKRWICTSVLART-NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
              GI +     +   +LA        +     LAL +      + E   ++ +  K   
Sbjct: 470 -YQGITL--DGVVFDPMLASYVLNPDRTHNLTDLALRYLGLQ--LTEYDDIVQKSGKKER 524

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189
                D   + H  A      YC + V AT +L  +L             L D E+ L +
Sbjct: 525 QKTIADI--SIHTVA-----NYCGKQVYATWQLVGKLREELNEIPALFKLLVDVEQPLEV 577

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +  RG  I+   + +L + I  +   L+    K+      +      L   LF   
Sbjct: 578 VLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIAGEKF-NLGSPKQLSYILFEKL 636

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVS-S 301
           G+      + +       + + +L +       D I+     +      ++ L E V+  
Sbjct: 637 GLSTKYSRKISTGYSTDAATLEKLQEVDQTGFVDAIIEYRTLAKLKSTYVDALPELVNHK 696

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             R+        A+ TGR S      QN+P +                           S
Sbjct: 697 TQRIHTNFN-QTATATGRLSSSNPNLQNIPIRT------------------------AFS 731

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   +  +G  +V AD + IE R+LA ++ E   I+A++N +DI+  T    F+   
Sbjct: 732 RQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK-- 789

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           + V+ E+R   K +   + Y  G       +   G+D    ++ ++              
Sbjct: 790 EDVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQ-------------- 832

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                    +F  +  L+ T  E +KK                 +  +    E      R
Sbjct: 833 ---------KFNQRYPLVFTYLETIKK-----------------QAISQGYVETILGRRR 866

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                 + + +   +D+         +  + +K     L    + L+R            
Sbjct: 867 YFDFTNKTLQQLKGKDLQ-------EIELNKLKN----LGPYDAGLLRSAANAP------ 909

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
           +Q  S DI+   M    +        ++L VHDE+V E P + +  +   + S+M
Sbjct: 910 IQGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDELVFEVPPSEWDELQLQIKSVM 964


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 179/527 (33%), Gaps = 82/527 (15%)

Query: 28  AVITLCAY-AWDDEPVKLWDRTEQSAMPSDLLQ----YLRDETVMCVAHNSLFERILFKK 82
            +    A+ +  D  V+ W        PS++L      L D  +    H    ++++  +
Sbjct: 381 PIYLPMAHRSLSDGAVQQW-------KPSEVLAKVGPLLSDAKLPKYTHALKDQQVVLSR 433

Query: 83  TLGIDIPSKRWICTSVLARTNGLPS-------SLKNACLALNFSEHLTKMEEGKALIARF 135
              +++  +  +  ++LA     P+        L          +  + + +GK  +   
Sbjct: 434 A-DLNVEVRNVVGDTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRESIVGKGKKRVGFD 492

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTI 194
                 + P+   RA              +   E T++L+      ++ E  L  +   +
Sbjct: 493 QVAVAVAGPWAGERAGLAATLGPHMVAAAKAAGEQTQKLY------AEVELPLARVLARL 546

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             RG  +D   + +  + +  +   L   + +     +        L   LF   G+   
Sbjct: 547 ERRGVLLDEAELQRQNDELGGQIDALKSTLQEEAGYAVD-PNSPKQLGKLLFEERGLPAK 605

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310
             ++    T    L   ++      +IL+  + +      L+TL + V+   GRL    +
Sbjct: 606 KKTKTGYSTDAQTLEELSLLDPIVKVILDYRSLAKLKNTYLDTLPKLVNPNTGRLHTHFR 665

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P +                              +R   +A
Sbjct: 666 -QAVAATGRLSSREPNLQNIPIRT------------------------EQGRRIRRGFVA 700

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G +LV  D + IE RVLA ++ +   +KAF +G D++  T A+ F  P  +V+ EQR 
Sbjct: 701 PEGMQLVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQRR 760

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-- 484
           + K +   + Y     G A+         G  ++ + + +   S++ +     +      
Sbjct: 761 VAKAVNFGVIYGQSAFGLARQLGIPQGRAGKYIKAYFKKIPGVSSYMNALIDTAKDTGFA 820

Query: 485 -------------------MQDQYPEFAVKDKLIGTACELVKKAWRA 512
                               +      A    + G+A +++K A   
Sbjct: 821 ETIFGRRRRIPELRRRGAVARSYGERIARNTPIQGSAADILKIAMVE 867



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNAT-----KNGYDIVLTVHDEIVSETPDTPYFSV 644
           R+YG ++  N  +Q  + DIL   M         K    ++LTVHDE++ E        +
Sbjct: 841 RSYGERIARNTPIQGSAADILKIAMVEVERLLDDKPWARMLLTVHDELIFECETDKVQEL 900

Query: 645 GTLCS 649
             L  
Sbjct: 901 IGLVK 905


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/511 (18%), Positives = 170/511 (33%), Gaps = 83/511 (16%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
                 L     +  +   AH+  ++  + K      I        ++LA     P   +
Sbjct: 356 EKALKKLAPLFENSRIGFYAHHLKYDLHILKNY---GISLANISFDTILASYILTPHLRQ 412

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           ++  AL              LI +  K  I        +            YC  DV+ T
Sbjct: 413 HSLDALTLEHFGKTKIPTSDLIGK-GKNQITMLEVPIEKV---------CAYCCEDVDYT 462

Query: 171 RELFK---------RLIPLSDGERDLW-LLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L +         +L PL          +   +   G  +D  ++  L++ +  + ++L
Sbjct: 463 YRLKQIFASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRL 522

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           + +I  + D    + +    L   LF    I     +        S   +  L  +  + 
Sbjct: 523 ENEIHAIADEPF-NLKSPKQLSGILFEKMKIPPPKKT--ATGYSTSAEVLETLQNEYAIA 579

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +      ++ KL      TL + ++   GR+  T     A+ TGR S      Q +P   
Sbjct: 580 KKMLEFRSLEKLRSSYIETLPKEINPKTGRIHPTFNQSVAA-TGRLSCQDPNLQQIP--- 635

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIA 393
                             I  PLG     VR        G   + AD + IE R+LA  +
Sbjct: 636 ------------------IRTPLG---REVRKAFRPEKQGWSYLSADYSQIELRLLAHFS 674

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
            +   I AF N EDI+  T A   N P+++V+KEQR   K +   + Y     G +K   
Sbjct: 675 EDPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNFGILYGQQAWGLSKELG 734

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    ++ + Q  +    F +                       + +S +  ++  
Sbjct: 735 ISLEEASAFIKTYFQRYQRVKDFVESCKEKTRKTGRAMTIIGRERPIPEIDSKNPQIRGA 794

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               AV   L GTA +L+KKA     + +++
Sbjct: 795 AERLAVNTPLQGTAADLIKKAMIVIDEKLMR 825


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/583 (14%), Positives = 184/583 (31%), Gaps = 105/583 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCK 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +++   R + +K   + I          LA     P   +    +L  
Sbjct: 376 EMFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                 +         F K    +             +++  E  K      +++ + L 
Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            +   E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSEEEF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R+  K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
               H+           +LQ+  +L         E      ++
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/583 (14%), Positives = 184/583 (31%), Gaps = 105/583 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCR 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +++   R + +K   + I          LA     P   +    +L  
Sbjct: 376 EMFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLINPVRKEYEISSLAS 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                 +         F K    +             +++  E  K      +++ + L 
Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            +   E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R+  K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
               H+           +LQ+  +L         E      ++
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/556 (16%), Positives = 184/556 (33%), Gaps = 79/556 (14%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            +  +A  ++    +  TE +   ++   ++ D+ +    ++               +  
Sbjct: 329 MIVGFAVYNDSEAYFIGTEDALNCTNFKNFISDKKIEKYGYDIKK---SINAAKWHGLEI 385

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPPYDCT 148
           + ++    LA     PS          + E+      EE       + KG+    P    
Sbjct: 386 ENYVFDLQLASYILNPSLKDEIRSVCEYYEYYDVFYDEEV------YGKGAKKKVPETSR 439

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVL 207
            A H+   Q    Y  +D    +   +    L  D E  +  +   +  +G ++D  ++ 
Sbjct: 440 VAEHLIK-QAKAIYILKDQAIEKLNNENQFELYKDVEMPVAKILARMEFQGAKVDSVVLK 498

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +L+E   +E   L+++I  L +     +     L   LF   G+     ++    T   I
Sbjct: 499 QLEEQFGREINILEKEIHTLANREFNIA-SPKQLGEVLFEDLGLPNGKKTKTGYSTSVDI 557

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L+         D +L     S      +  L + V  DG++         ++TGR S   
Sbjct: 558 LNKLKDIHPIIDKVLKYRTLSKLYSTYIIGLQDQVFIDGKIHTIYN-QALTQTGRLSSTD 616

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   +      LV  D + I
Sbjct: 617 PNLQNIP------------------------VKTPEGKLIRKAFVP-EYDYLVSFDYSQI 651

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA +AG    IKAF   +DI+  T ++ F  P ++V    R   K +   + Y   
Sbjct: 652 ELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGIIYGMS 711

Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479
               A+            ++++ +N      + D                       +  
Sbjct: 712 DFGLAEQVGVSVGEAREFIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKRFIREIN 771

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLT-EGF 528
             +   Q+     A+   + G+A +++K A             K + +LQ+  +L  + +
Sbjct: 772 EKNYMRQEFGKRLAMNSPIQGSAADIIKVAMIKVDELLKKHQLKSKMILQVHDELIFDVY 831

Query: 529 ACVVQEGGSISARRVA 544
              +QE   I A+ + 
Sbjct: 832 QEELQEVMEIVAKGMT 847



 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 14/144 (9%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             +R       +      ++     +       + K     +N      MR+  +G +L 
Sbjct: 729 FIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKRFIREIN--EKNYMRQE-FGKRLA 785

Query: 599 ENI-VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL- 650
            N  +Q  + DI+   M          +    ++L VHDE++ +        V  + +  
Sbjct: 786 MNSPIQGSAADIIKVAMIKVDELLKKHQLKSKMILQVHDELIFDVYQEELQEVMEIVAKG 845

Query: 651 MTKNPSWAKGLPLKAEG-YEAKRY 673
           MT        + LKAEG Y    Y
Sbjct: 846 MTTAIK--MDVELKAEGSYAVNWY 867


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 160/493 (32%), Gaps = 64/493 (12%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           S    +L D  V     N    R +   K  G +I         + +       +  +  
Sbjct: 354 SKFKAWLEDGRVKKTVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLA 410

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                  +     + ++  A + KG+  S       A HV        Y K  +E     
Sbjct: 411 TIAKLKGYH----QVQSDEAVYGKGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVE 466

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++       E  L ++   +  +G +ID   + ++ E + ++ +K++  I +       
Sbjct: 467 NEQFELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF- 525

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF    + ++  ++    T   +L     T      IL           
Sbjct: 526 NINSPKQLGVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQST 585

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L + +   DG++         ++TGR S      QN+P +                
Sbjct: 586 YIEGLKKVIHESDGKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR---------------- 628

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S  G  +  AD + IE RVLA IA ++  I AF +  DI
Sbjct: 629 --------LEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDI 680

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T    F+   ++V+   R   K +   + Y     G ++            ++++ +
Sbjct: 681 HTKTAMDVFHVEREEVTANMRRQAKAVNFGIVYGISDYGLSQSLGITRKAAATFIERYLK 740

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           +      + D                       +  S +  ++      A+   + GTA 
Sbjct: 741 SFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGTAA 800

Query: 504 ELVKKAWRAKHQG 516
           +++KKA     + 
Sbjct: 801 DIIKKAMIEMDKR 813


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 135/386 (34%), Gaps = 65/386 (16%)

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
              ++ ER L  +   +   G+++D D +L+  + I  +   L++ I ++      +   
Sbjct: 447 FVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAGEWF-NINS 505

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L   LF    + ++  ++    T   +L           LIL+    +         
Sbjct: 506 PKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQG 565

Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L +A++   GR+  T    G + TGR +      QN+P +                    
Sbjct: 566 LLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY------------------- 605

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T 
Sbjct: 606 -----DEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTA 660

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           A+ F   ID V+ E R+  K +   + Y     G A+  K         + ++ +     
Sbjct: 661 AEIFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKV 720

Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508
             + D     +                      +   +      A+   + G+A +++K 
Sbjct: 721 KEYLDNIVKFARENGYVLTLFNRKRYIKDINSTNRNTRSYAERIAMNSPIQGSAADIMKL 780

Query: 509 AWRAKHQG----------VLQLWKDL 524
           A    +Q           +LQ+  +L
Sbjct: 781 AMIKVYQKLKENNLKAKIILQVHDEL 806



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 15/165 (9%)

Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVM 551
           ++ G   + V    R++    + G++    D        + ++  +    R       V 
Sbjct: 662 EIFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
                 V     +   L   + K     +N+        R+Y  ++  N  +Q  + DI+
Sbjct: 722 EYLDNIVKFARENGYVLTLFNRKRYIKDINSTNR---NTRSYAERIAMNSPIQGSAADIM 778

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              M    +          I+L VHDE++ E P      V  +  
Sbjct: 779 KLAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVKRIVK 823


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/502 (15%), Positives = 158/502 (31%), Gaps = 82/502 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            ++  +L       + HN  F+ R+     + +  P      T ++              
Sbjct: 442 KEVKTFLSTSKAEKIGHNLKFDLRVFLAHGIEVAGPFFD---TMLVHALVEPDQRHGMDY 498

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L+  +  +          I         + P        ++      EY   D + T +L
Sbjct: 499 LSERYLGY------SPVSITTLIGEKKGATPQKSMAEVPLEPLA---EYAAEDADVTLQL 549

Query: 174 FKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            ++L P  +           E  L  +   +   G ++D+  + +  + +  +   L E 
Sbjct: 550 SQKLRPELERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVLRER 609

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I    D    +      L   LF    +        T +   +   +  L     +    
Sbjct: 610 IQGYVDWPF-NLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPIIDDI 668

Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            +     KL     + L  AV+    R+  T     A+ TGR +      QN+P +    
Sbjct: 669 LAYRECTKLKSTYVDALPAAVNPLTHRVHTTFHQLMAA-TGRMASTDPNLQNIPIRT--- 724

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   +    G  L+ AD + IE RV+A ++ + 
Sbjct: 725 ---------------------DQGREIRKAFVPEKEGWVLMSADYSQIELRVMAELSADP 763

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-----KVFKTM 451
             ++AF  G DI+  T AK +   +D+V  E R   K++   + Y   A     ++  T 
Sbjct: 764 AMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFGLSQRLGNTS 823

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
            +     ++ + +       + +    ++                      ++ ++    
Sbjct: 824 RTEAAQIIENYFKQYPGVKRYMEDIVTQARTQGYVETLTGRRRYLRDINSSNMTVRSATE 883

Query: 491 EFAVKDKLIGTACELVKKAWRA 512
             A+   + GTA +++K A   
Sbjct: 884 RVAMNAPIQGTAADMIKLAMVN 905


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 105/575 (18%), Positives = 181/575 (31%), Gaps = 95/575 (16%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAMPSDLL 58
           D ET S       L  +G              +      D      W+  +QS  P    
Sbjct: 367 DTETTSLDPRDAQLVGIGCCWSEGDIAYLPIGHRQGSNLD------WELVKQSLQPLW-- 418

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLA 115
               D        N  ++  +F+   GI +   ++    + +      +S      A   
Sbjct: 419 ---EDPNRPKSLQNCKYDLSIFRAH-GIRLQGIQF-DPMLASYVLDPEASHNLADLAATH 473

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN      K   GK       +   D P           A+  +        E  ++   
Sbjct: 474 LNLPTTSYKKLLGKE------QSIADIPISKVAEYCGTDAYCAYRLV-PILTEKLQKTDP 526

Query: 176 RLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           RL  L    E  L  + + +   G R+D + + +  + + QE + L++           +
Sbjct: 527 RLWDLFIQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQELQSLEQKAYAQAGETF-N 585

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L   LF    +D+    +         S + +L  D  L         + KL  
Sbjct: 586 LNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGDHPLIETIVQYRTLAKLKS 645

Query: 293 ---NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L   V SD GR+         + TGR S      QN+P +               
Sbjct: 646 TYVDALPALVRSDTGRVHTDFN-QTVTATGRLSSSNPNLQNIPIRT-------------- 690

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                       S  +R   I   G  L  AD + IE R+LA ++ E   ++ F +GED+
Sbjct: 691 ----------EFSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEGFRSGEDV 740

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQ 464
           +  T          +++ E+R + K +   + Y  GA+ F   A    S     LQ+F++
Sbjct: 741 HTLTARLL--LEKQEITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQRFNE 798

Query: 465 NV-------KSTSTFEDWEQAESHHLWMQDQYP--------------EFAVKDKLIGTAC 503
                    +ST  F +        L  +  +P                AV   + G+A 
Sbjct: 799 RYAGIFAYLRSTEAFVEKHGYVETILGRRRYFPNLSRLTGHRKQAELRAAVNAPIQGSAS 858

Query: 504 ELVKKAWRAKHQG----VLQLWKDLTEGFACVVQE 534
           +++K A     Q       +L   + +     V  
Sbjct: 859 DIIKVAMVRLRQKLQNFRSRLLLQVHDELVFEVDP 893


>gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/505 (14%), Positives = 162/505 (32%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P+  +   + LA+                         + +     + KG
Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          ++ ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPEQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF   G+ L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA+++DG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             +Q + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V  G   + R++  
Sbjct: 829 LLQVHDEIVLEVPNGELTAVRQLVK 853



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/526 (15%), Positives = 173/526 (32%), Gaps = 82/526 (15%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKNACLALN 117
            DET      ++    I  ++     I  K      +LA         PS   +      
Sbjct: 362 EDETKKKTVFDAKRTVIALRRH---GIELKGIEFDLLLASYLINPSESPSDFADVAKLHG 418

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL---FGEYCKRDVEATRELF 174
           F+       E ++  A + KG+    P       H+    +         RDV    +  
Sbjct: 419 FN-------EVQSDEAVYGKGAKLKLPDREIYEEHIARKAVGLTKLAETCRDVLKEND-- 469

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            +L    D E  L L+   +   G ++D+D + ++ + +    ++++++I +L      +
Sbjct: 470 -QLSLFYDLEMPLALILADMEWTGVKVDVDRLTEMGDELHNRLQEIEKEIYELAGQEF-N 527

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L   LF   G+ ++  ++    T   +L     +      IL            
Sbjct: 528 INSPKQLGHILFEKMGLPVIKKTKTGYSTSADVLEKLESSHEIVRYILEYRQLGKLQSTY 587

Query: 292 LNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L + V  +  ++         ++TGR S      QN+P +                 
Sbjct: 588 IDGLLKVVHQNTHKVHTRFN-QALTQTGRLSSADPNLQNIPIR----------------- 629

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   + S     +  AD + IE RVLA I+G+   I+AF    DI+
Sbjct: 630 -------LEEGRKIRQAFVPSEKDWVIFSADYSQIELRVLAHISGDQKLIEAFREDMDIH 682

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T    F+   ++V+   R   K +   + Y     G ++         G  ++++  +
Sbjct: 683 TKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGQFIERYFAS 742

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + D                       +  S +  ++      A+   + G+A +
Sbjct: 743 YPDVKEYMDEIVREAKRKGYVTTLLHRRRYLPEITSRNFNVRSFAERTAMNTPIQGSAAD 802

Query: 505 LVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
           ++KKA         K Q   ++   + +     V      + +++ 
Sbjct: 803 IIKKAMIDMAERLKKEQLKSRMLLQVHDELIFEVPPDEIETMKKIV 848


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/493 (15%), Positives = 159/493 (32%), Gaps = 64/493 (12%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           S    +L D  V     N    R +   K  G +I         + +       +  +  
Sbjct: 354 SKFKAWLEDGRVKKTVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLA 410

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                  +     + ++  A + KG+  S       A HV        Y K  +E     
Sbjct: 411 TIAKLKGYH----QVQSDEAVYGKGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVE 466

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++       E  L ++   +  +G +ID   + ++ E + ++ +K++  I +       
Sbjct: 467 NEQFELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF- 525

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF    + ++  ++    T   +L     T      IL           
Sbjct: 526 NINSPKQLGVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQST 585

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L + +   DG++         ++TGR S      QN+P +                
Sbjct: 586 YIEGLKKVIHESDGKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR---------------- 628

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S     +  AD + IE RVLA IA ++  I AF +  DI
Sbjct: 629 --------LEEGKKIRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDI 680

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T    F+   ++V+   R   K +   + Y     G ++            ++++ +
Sbjct: 681 HTKTAMDVFHVEREEVTSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKAAATFIERYLK 740

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           +      + D                       +  S +  ++      A+   + GTA 
Sbjct: 741 SFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGTAA 800

Query: 504 ELVKKAWRAKHQG 516
           +++KKA     + 
Sbjct: 801 DIIKKAMIEMDKR 813


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/487 (18%), Positives = 162/487 (33%), Gaps = 79/487 (16%)

Query: 94  ICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               ++A     P   +      A   L       K   GK    +  K   +    DC 
Sbjct: 418 YFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKED-EKKAVDCA 476

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                 AW+      ++  E       R     D E  L  +   + + G R D   + +
Sbjct: 477 CYEVYTAWKSKPVLLQKLKEMDMLTLYR-----DIELPLVFVLYDMENEGIRADGIKLKE 531

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
             + +A    +L++ I +       +      L + LF   G+     ++       +  
Sbjct: 532 YGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTK--TGYSTAAD 588

Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +LA +  +         + KL     + LS  ++SDG++  TL     + TGR S  
Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLN-QTITATGRLSST 647

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P +                              +R   +   G   V +D + 
Sbjct: 648 EPNLQNIPIR------------------------IELGKLIRKVFLPEEGDLFVDSDYSQ 683

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA ++G++  I+AF NG+DI+ +T +  F+TP D+V+  QR   K +   + Y  
Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGI 743

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481
              G +             +  +         F D    ++                   
Sbjct: 744 SAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPEL 803

Query: 482 --HLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGF 528
               +MQ Q+    A+   + GTA +++K A    H            +LQ+  +L    
Sbjct: 804 NSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIET 863

Query: 529 ACVVQEG 535
               ++ 
Sbjct: 864 KEAEKDK 870


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/511 (16%), Positives = 175/511 (34%), Gaps = 97/511 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNA 112
           L     +E +  V H+S    ++ KK    +I +K     + +A     PS     LK+ 
Sbjct: 378 LKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIAFDTKIAAYLLQPSKSDYMLKDL 434

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              +         +  K     + K   +    D  ++N                    E
Sbjct: 435 IEEMLLLSLKD-DDNIKINETYYIKDVYEKLEKDIKKSN------------------MEE 475

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L      L   E  L  +  ++   G+R+D + + ++ E   +E + L+++I +L D   
Sbjct: 476 L------LYTVELPLIEVLASMECEGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEF 529

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            + +    L   LF    + ++  ++    T   +L     +    + I+     +    
Sbjct: 530 -NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIIEKIIEYRQITKLDS 588

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L   +  D ++  +      + TGR S      QN+P +                
Sbjct: 589 TYVEGLKNVIDEDAKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKH--------------- 632

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + +N + ++  AD + IE R+L+ IA ++  I AF + +DI
Sbjct: 633 ---------EMGREIRKVFVPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDI 683

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           +  T ++ F  PID+V+   R+  K +   + Y  GA    K            +  +  
Sbjct: 684 HTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFS 743

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
              +   + D                       + +S +  ++      A+   + G+A 
Sbjct: 744 RYPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQGSAA 803

Query: 504 ELVKKAWRA----------KHQGVLQLWKDL 524
           +++K A             K   +LQ+  +L
Sbjct: 804 DIIKLAMVEVYNELKNRNLKSTLILQVHDEL 834


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 128/369 (34%), Gaps = 58/369 (15%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L      +   G  ID   + +  E +A   K+L+  I +       +      L 
Sbjct: 510 IEMPLVFTLADMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAGEEF-NINSPKQLG 568

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297
           + LF    +     ++       +   + +LA +  +         + KL     + L+ 
Sbjct: 569 VILFEKLEMPYGKKTKTG--YSTAADVLDKLAPEYPIVADILEYRQLTKLKSTYADGLAN 626

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +  DGR+  +      + TGR S      QN+P +                        
Sbjct: 627 YIKEDGRIHTSFN-QTITVTGRLSSTEPNLQNIPMR------------------------ 661

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   + + G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F
Sbjct: 662 IELGRLIRKAFLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVF 721

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           + P D+V+  QR   K +   + Y     G ++            ++++ +      TF 
Sbjct: 722 HIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFL 781

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D                       +  S +   +      A+   + GTA +++K A   
Sbjct: 782 DGLVEDAKKNGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIR 841

Query: 513 KHQGVLQLW 521
            H  +L+  
Sbjct: 842 VHDRLLEEH 850



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M               +++TVHDE++ ET +    
Sbjct: 814 QRSFGERVAMNAPIQGTAADIIKIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEID 873

Query: 643 SVGTL 647
            V  +
Sbjct: 874 RVKEI 878


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/619 (17%), Positives = 195/619 (31%), Gaps = 126/619 (20%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L  +    V  N+ F+R++FK      I     +  ++LA     P        
Sbjct: 45  DSLRTILESKNYPKVFQNTKFDRLIFKHQ---GINLDGVVFDTMLASYVLHPE------K 95

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +   SE   +  EG         G            + V       EYC  D  AT  L 
Sbjct: 96  SHKLSELCEQYLEGITSQNYKELGIGKKQTIADLEIDKV------AEYCGMDAYATFLLV 149

Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + L             L + E+ L  +   + D G  ID + + +L + + ++   L+E 
Sbjct: 150 EPLKNELKQVSSLEKLLLEVEQPLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEEK 209

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             ++  G   +      L   LF    ++     +        H+ + +L  D  +    
Sbjct: 210 AYEVAGGKF-NLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLDKLKGDHPIIDYI 268

Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L E V     R+         + TGR S      QN+P +    
Sbjct: 269 LEYRTLSKLKSTYIDALPELVDTKTKRIHTNFN-QSVTATGRLSSSNPNLQNIPIRT--- 324

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                  S  +R   I      LV AD + IE R+LA ++ E  
Sbjct: 325 ---------------------EFSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPV 363

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + A+ N ED++  T    F    +K++ ++R +GK +   + Y  G++     A   G+
Sbjct: 364 LLNAYQNTEDVHTVTAKLLFEK--EKITSQERNLGKTINFGVIYGMGSQR---FAREAGV 418

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +  + +      + + +   +   M+ +         ++G                 
Sbjct: 419 TAAEGKEFI--NKYRQRYAKVFEYLESMKKEAIANGYVTTILGR---------------- 460

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                                  R        + R    D   +  +   + Y+D     
Sbjct: 461 ----------------------RRYFNFFDDNLYRFRGHDPQTIDLNQLNINYND----- 493

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIV 633
                  SQL+R            +Q  S DI+   M    +  N     ++L VHDE+V
Sbjct: 494 -------SQLLRAAANAP------IQGSSADIIKIAMVKIQEILNHCQANLLLQVHDELV 540

Query: 634 SETPDTPYFSVG-TLCSLM 651
            E P   +  +   +   M
Sbjct: 541 FEIPVKEWEKLENKIKETM 559


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 143/442 (32%), Gaps = 68/442 (15%)

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           SLK             +   GK  I        +               +L  +  + D 
Sbjct: 524 SLKEGKEQEKTEPVREEQTAGKVSIRTALNP-AEQCICHMAYTAWKSRERLTKKLEELD- 581

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +ELF  +      E  L      +   G  +  + +    E +  + ++L+++I   
Sbjct: 582 --MKELFYTI------EMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGE 633

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L   LF    +     ++       +   + +LA +  + +      
Sbjct: 634 TGEHF-NINSPKQLGEILFGKMELPYGKKTKTG--YSTAADVLEKLAPEYPVVQKILDYR 690

Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            + KL     + L+  +  DGR+ GT      + TGR S      QN+P           
Sbjct: 691 QLTKLKSTYADGLAGYIREDGRIHGTFN-QTITATGRLSSTEPNLQNIP----------- 738

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +   G   V AD + IE RVLA ++G++  I+A+
Sbjct: 739 -------------VRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAY 785

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
              EDI+  T ++ F+ P+++V+  QR   K +   + Y     G ++            
Sbjct: 786 RKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSITRKEALEY 845

Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497
           + ++ +       F D                       +  S +   +      A+   
Sbjct: 846 INRYFETYPDVKKFLDRLVEEGKEKGYVTTMFKRRRPVPELSSKNFMQRSFGERVAMNSP 905

Query: 498 LIGTACELVKKAWRAKHQGVLQ 519
           + GTA +++K A       + +
Sbjct: 906 IQGTAADIIKIAMNRVDNRLRR 927


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 128/383 (33%), Gaps = 69/383 (18%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           ER L  +   + + G  +D   + +L    +     L+    +L       S     LR+
Sbjct: 637 ERPLIEILADMEEAGVALDRARLRQLSRDFSARLTDLERQAHQLAGEPFNLS-SPPQLRV 695

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298
            LF   G+     +    ++  +   + +LA    L ++      I KL     + L   
Sbjct: 696 ILFERLGLPPRGKTPKG-EASTAQEVLEELAALHQLPKVLLEHRRIEKLKNTYLDALPNL 754

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
              DGR+R T    G + TGR S      QN+P +                         
Sbjct: 755 THPDGRIRATFN-QGVTATGRLSSSEPNLQNIPVRT------------------------ 789

Query: 359 LASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                VR   +A +   + L+ AD + IE RVLA  + +   ++AF    DI+    AK 
Sbjct: 790 EEGRQVRQAFVAGDPARQVLLTADYSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKI 849

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F   +D V+ +QR + K +   + Y     G A       S     +  +         F
Sbjct: 850 FGVALDSVTSDQRRMAKTVNFGVIYGLSAHGLASRLGISQSEAAAFINAYFDQYPHVEAF 909

Query: 473 EDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWR 511
                 ++      +                          A+   + G+A +L+K+A  
Sbjct: 910 MTRVLTQARDTGRVETLEGRRRAINGIKHVEGRHRNLAERTAINTVIQGSAADLIKRAMI 969

Query: 512 AKHQG----------VLQLWKDL 524
           A  Q           +LQ+  +L
Sbjct: 970 AVDQRLKETKLPARMILQIHDEL 992


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/492 (18%), Positives = 172/492 (34%), Gaps = 71/492 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLK 110
             L + +  E V+    +  F  ++  +   I + +   +     A   G  +    SL 
Sbjct: 480 DVLRKLMESEAVLKSGLDIKFISVMLAQH-KITLRTTDDVQLMSYALDAGRGAHDIESLA 538

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEA 169
              LA    +H   +  G+  ++        +  Y    A+ + + W L         E 
Sbjct: 539 QKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGAETADIIIRLWLLMKARLIS--ER 596

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +L+++I K+  
Sbjct: 597 MNNVYESL------ERPLIGVLARMERRGIMIDRQVLSRLSGDFAQTASRLEDEIRKIAG 650

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288
             I +      L   +F   G+     ++ T     S S +  LA++  +  R       
Sbjct: 651 EDI-NPGSPKQLGDVIFGKMGLPGGQKTK-TGAWSTSASILEDLAEEGHVFPRKILDWRQ 708

Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KL     + L   V+   +   T     A+ TGR S      QN+P +          
Sbjct: 709 VSKLKSTYTDALPNYVNPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------- 761

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA  G KLV AD + IE R+LA IA      +AF 
Sbjct: 762 -----------------GRKIRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVLKQAFH 804

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +  DI+  T ++ F  P+  +  E R   K +   + Y     G A          G  +
Sbjct: 805 DKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYI 864

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++ +       + D                     +   ++ +  ++      A+  +L
Sbjct: 865 KKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKASNASLRAFNERAAINARL 924

Query: 499 IGTACELVKKAW 510
            GTA +++++A 
Sbjct: 925 QGTAADIIRRAM 936



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 18/95 (18%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN--- 620
            R+  Y D+K   +            R +  +   N  +Q  + DI+   M         
Sbjct: 896 GRKCHYPDIKASNA----------SLRAFNERAAINARLQGTAADIIRRAMIRMEDALAE 945

Query: 621 ---GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLM 651
                 ++L VHDE+V E PD+    ++  +  +M
Sbjct: 946 KKLAARMLLQVHDELVFEVPDSEVGDTIPVIQEVM 980


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/637 (17%), Positives = 201/637 (31%), Gaps = 142/637 (22%)

Query: 51  SAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
             +P   +L  L              N+ ++R++  +     +  +  +  ++LA    L
Sbjct: 438 EQLPLETVLTALAPWLASSNHPKTLQNAKYDRLILLRH---GVALEGVVIDTLLADY--L 492

Query: 106 PSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +     L L               L+ +  K +    P +               YC 
Sbjct: 493 RDAAAKHGLELMAEREFGFQPTAFTDLVGK--KQTFADVPLEPAS-----------LYCG 539

Query: 165 RDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            DV  TR L             +L+PL +  E+ L  +   +   G RID+  +  L E 
Sbjct: 540 MDVHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEE 599

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           +    ++L+ D           +     L   LF   G+D               + + +
Sbjct: 600 MGSTLQQLESDAKAAAGVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEK 658

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           L  D  +  L      + KL     + L + V +  GR+         + TGR S     
Sbjct: 659 LGNDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPN 717

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                           S  +R   +   G  L+ AD + IE 
Sbjct: 718 LQNIPVRT------------------------EYSRRIRKAFLPQEGWTLLSADYSQIEL 753

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+ +G+D++  T     +   ++VS ++R +GK +   + Y  GA+
Sbjct: 754 RILTHLSGEEVLQEAYRSGDDVHALTARLLLDK--NEVSPDERRLGKTINFGVIYGMGAQ 811

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            F   A   G+   +  + +        ++Q         +     A+    + T     
Sbjct: 812 RF---ARETGVSQSEAKEFLA------RYKQRYPKVFAFLELQERLALSRGYVET----- 857

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPS 564
                                          +  RR  +  R  + R   K  + I L  
Sbjct: 858 ------------------------------ILGRRRPFHFDRNGLGRLLGKAPLEIDLNV 887

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
           +RR                 +Q +R            +Q  S DI+   M          
Sbjct: 888 ARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALQRQ 928

Query: 621 --GYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654
                ++L VHDE+V E  P+    +   +   M + 
Sbjct: 929 GLPAQLLLQVHDELVLEVAPNALDATRELVVQTMEQA 965


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 173/517 (33%), Gaps = 87/517 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSS 108
             L++     +V  + HN  ++  + ++       L  D     W+  +        P +
Sbjct: 391 ERLVRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLAFDTMVAAWLLDTTANSYGMDPLA 450

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L +     K    K     F   S+++       A        F E  +R + 
Sbjct: 451 ----ASLLGYKTISFKDVVPKD--GLFQDISVETATRYA--AEDADITFRFYELFRRQL- 501

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             R L K    L   E  L  +   +   G  +  D +      + ++   +++DI +  
Sbjct: 502 KERGLEKLFFEL---EMPLVPILAEMECAGITLLSDRLEAYGRELEKDLGTIEDDIWQAC 558

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +   T  L+  LF    +  +  ++    + +S   + +LA++ ++  L     +
Sbjct: 559 GHSF-NINSTKQLQQVLFEERKLTPIKKTKTGYSTDIS--VLEELAREDVVPLLVLRHRS 615

Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + KL     + L + V+   GR+   L   G + TGR S      QN+P +         
Sbjct: 616 LAKLKSTYVDALPKLVNPETGRIHTQLIQTG-TATGRLSSKDPNLQNIPIR--------- 665

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +RS  + + G   + AD + IE  VLA ++ +    +AF
Sbjct: 666 ---------------DEDGRRIRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAF 710

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLD 458
            +G D++  T +  F+     VS EQR I K +   + Y   A    +      S     
Sbjct: 711 RSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAFRLSRELGISRSRADSF 770

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           +  + +      +F                            S +   +      AV   
Sbjct: 771 ISAYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRERSIPAINSRNKTEKAGAERIAVNTP 830

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           + GTA ++VK A  A          K + VLQ+  +L
Sbjct: 831 IQGTAADIVKLAMLAVSRRMASEELKSKMVLQIHDEL 867



 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 598 TENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647
               +Q  + DI+   M   ++          +VL +HDE++ E P      +  L
Sbjct: 827 VNTPIQGTAADIVKLAMLAVSRRMASEELKSKMVLQIHDELLFEVPFDEADRMEGL 882


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 104/585 (17%), Positives = 208/585 (35%), Gaps = 100/585 (17%)

Query: 2   SKLFIDIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            ++  D ET S      K+  +++    + +     A+++   P  L        +   L
Sbjct: 313 KEIAFDTETTSVDSHNAKIVGFSFCWDEKSSFYVPLAHSYLGAPDML-----DKNIAKRL 367

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           ++ +   T   +  N  ++  + +   G++ P  ++  T +LA      +S+    LA  
Sbjct: 368 IEAIY--TKFIIGQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMDNLAKR 424

Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + ++ T   E        F    + +     +    +   + + ++C        +L K 
Sbjct: 425 YFDYDTIKFENVVKKGENFSSVDVKNAANYASEDAWI-TLKFYKKFCGILSTELLDLAKN 483

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L      E     +   + + G ++D+  + ++   IA++ K L  +I  L+     +  
Sbjct: 484 L------EFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNEIYDLSGENF-NIN 536

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNRLASSGSA 288
            T  L   LF   G+     ++    T +S LS     H+ + ++     L +L S+ + 
Sbjct: 537 STKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILAYRELYKLQSTYTE 596

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
            L    L      + R+       G + TGR S      QN+P                 
Sbjct: 597 PLLALALKN---DENRIFSNFLQTG-TSTGRLSSKNPNLQNIPAH--------------- 637

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G  +  +R+C ++ +G   V  D + IE R+LA  + +   ++AF   EDI
Sbjct: 638 ---------GSMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDI 688

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQ 464
           +  T    F T      KE+RA+ K +   L Y  GA           S     ++++ +
Sbjct: 689 HSRTAISIFGTS----DKEKRAVAKTINFGLIYGMGASKLSNELGISRSDAKDYIEKYFK 744

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACE 504
              S   F +  ++E+                            Y   +V  K  G+A +
Sbjct: 745 AFASIKNFMENLKSEAKKNGYTTTLFGRKRYFDFANATPMQFAMYERESVNTKFQGSAAD 804

Query: 505 LVKKAWRAKHQ---------------GVLQLWKDLTEGFACVVQE 534
           ++KKA                      + ++  D++E F   +QE
Sbjct: 805 IIKKAMVEISPFLNENTRLLLQIHDELIFEVRDDMSESFGKKMQE 849



 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDE 631
           G   Y + A +  M+   Y  +      Q  + DI+ + M   +        ++L +HDE
Sbjct: 771 GRKRYFDFANATPMQFAMYERESVNTKFQGSAADIIKKAMVEISPFLNENTRLLLQIHDE 830

Query: 632 IVSETPDTPYFSV-GTLCSLM 651
           ++ E  D    S    +  +M
Sbjct: 831 LIFEVRDDMSESFGKKMQEIM 851


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/557 (15%), Positives = 177/557 (31%), Gaps = 104/557 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E  S   + K+ +  Y E+       Y  + +        ++        ++  +E  + 
Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKAFKEFFENEDTLK 376

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             ++        KK LGID     + C       +          L  N+      ++EG
Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435

Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           +  +    F K                +                         + D E  
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +  ++   G++++ D++ +L     +E ++  ++I +L D    +      L   LF
Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L          + I      S      +  L   + +DG
Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   I    G  L+ AD + IE RVLA I+G++  I AF +  DI+  T ++ F  P++
Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685

Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472
           +V+   R+  K +   + Y  G    ++            +  + +       +      
Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
                              +A + +  ++      A+   + GTA +++K A    +   
Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805

Query: 515 -------QGVLQLWKDL 524
                  + +LQ+  +L
Sbjct: 806 KELNLNSKLILQVHDEL 822



 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           +     + +H        L   + +      N +       +  G +L  N  +Q  + D
Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           I+   M N             ++L VHDE++          V  L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 127/703 (18%), Positives = 220/703 (31%), Gaps = 170/703 (24%)

Query: 5   FIDIETRSPQP-----LPKVGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            +D ET S        L  VGV      +        +    EP  L D +    +P D 
Sbjct: 392 ALDTET-SDLNPFKAQLVGVGVCWGPELDDLAYIPVGHRPSAEP-SLEDSSAIQQLPLDT 449

Query: 58  LQY-----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKN 111
           +       L          N+ ++R++  +     +P    +  ++LA       +    
Sbjct: 450 VLAQLAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLADYLRDAAAKHGL 506

Query: 112 ACLALN--------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             +A          FS+ + K ++GKA    F +  I+                    YC
Sbjct: 507 DAMAERDYGIQPTLFSDLVGKAKDGKASC--FAEVEINQAA----------------LYC 548

Query: 164 KRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             DV  TR L             RL+PL D  E  L  +   +   G RID   +  L  
Sbjct: 549 GMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAALST 608

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +AQ  ++L+ +  +        +     L   LF   G+D               + + 
Sbjct: 609 EMAQTLERLETEAKQAAGMEFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLE 667

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVF 325
           +L +D  +  L      + KL     + L + V +  GR+         + TGR S    
Sbjct: 668 KLEQDHPVVPLVLEHRTLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNP 726

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                           S  +R   +   G +L+ AD + IE
Sbjct: 727 NLQNIPVRT------------------------EFSRRIRKAFLPQAGWQLLSADYSQIE 762

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+L  ++GE+   +A+ +G+D++  T           V+ ++R +GK +   + Y  GA
Sbjct: 763 LRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIYGMGA 820

Query: 446 KVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
           + F        +     L ++ +       F + +                A+    + T
Sbjct: 821 QRFARETGVSQAQAKEFLSKYKERYPKVFAFLELQ-------------ERLALSRGYVET 867

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVH 559
                                               +  RR  +  R  + R   K  + 
Sbjct: 868 -----------------------------------ILGRRRPFHFDRNGLGRLLGKDPLE 892

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
           I L  +RR                 +Q +R            +Q  S DI+   M     
Sbjct: 893 IDLEVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQA 933

Query: 620 NGYD------IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655
                     ++L VHDE+V E   T    V  L  + M +  
Sbjct: 934 ALEQQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQAI 976


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 144/407 (35%), Gaps = 68/407 (16%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L   ++ E  L  +  ++   G R D D + +  + + ++ + L   I  L  G    
Sbjct: 451 EMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTSQIYDLAGGEFNI 510

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
           +     L   LF   G+     ++    +      + +LA    +  L      + KL  
Sbjct: 511 A-SPKQLGEVLFEKLGLPAKKKTKSGYSTNAE--VLEELADKHPIVGLVLEYRTLTKLNS 567

Query: 293 ---NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
              ++L + V +DGR+R   +    +RTGR S      QN+P ++               
Sbjct: 568 TYVDSLLKEVEADGRVRSVFK-QTETRTGRISSTEPNMQNIPVRK--------------- 611

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A +G   + AD + IE RVLA + G++   K FA+G DI+
Sbjct: 612 ---------EIGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIH 662

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQN 465
             T ++ F  P D V  E R+  K +   + Y  GA    K            ++ +  N
Sbjct: 663 TMTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVKEAKQYIKNYLDN 722

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               S F D                       +  + +  MQ      A+   + G A +
Sbjct: 723 FPKVSEFMDKTVEDGIKNGYVTTIFGRRRYIPELAATNKVMQAFGKRAAMNAPIQGAAAD 782

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541
           ++K A    ++           +LQ+  +L        +E      +
Sbjct: 783 IIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAILK 829



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
             +    +   +    +  Y   + G   Y+    +     + +G +   N  +Q  + D
Sbjct: 723 FPKVSEFMDKTVEDGIKNGYVTTIFGRRRYIPELAATNKVMQAFGKRAAMNAPIQGAAAD 782

Query: 609 ILCEGM------KNATKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654
           I+   M        A K    ++L VHDE++ E  PD    +   L   M K 
Sbjct: 783 IIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAILKEEMEKA 835


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/683 (16%), Positives = 216/683 (31%), Gaps = 144/683 (21%)

Query: 1   MSKLFIDIETRSPQP----LPKVGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54
           +  + +D ET +  P    L  +GV      +        +     P +L +      +P
Sbjct: 385 LKPVALDTETTALNPFCAELVGLGVCWGEGLQDLAYIPIGH---HPPAELLEAEAACQLP 441

Query: 55  -SDLLQY----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
              +L+     L          N+ ++R++  +     +  +  +  ++LA    L  + 
Sbjct: 442 LEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH---GLALEGVVMDTLLADY--LRDAA 496

Query: 110 KNACLALNFSEHLTKMEEGKALI----ARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCK 164
               L +           G + +      F   +I +   Y     +  +   L      
Sbjct: 497 AKHGLEVMAEREFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLALRLRAQL 556

Query: 165 RDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            D+ A      +L+PL +  E+ L  +   +   G RIDL  +  L   + +  ++L+E 
Sbjct: 557 EDMGA------KLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVELGETLERLEEQ 610

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +        +     L   LF   G++               + + +L  D  +  L 
Sbjct: 611 AREAAGVDFNLA-SPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLV 669

Query: 284 SSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                + KL     + L + V S  GR+         + TGR S      QN+P +    
Sbjct: 670 LEHRVLSKLRSTYVDALPQLVESETGRVHTDFN-QAVTATGRLSSSNPNLQNIPIRT--- 725

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                  S  +R   +     +L+ AD + IE R+L  ++GE+ 
Sbjct: 726 ---------------------EFSRRIRKAFLPQENWQLLSADYSQIELRILTHLSGEEV 764

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMAS 453
             +AF NG+D++  T     +   D+VS ++R +GK +   + Y  GA+ F        +
Sbjct: 765 LQEAFRNGDDVHALTARLLLDK--DEVSSDERRLGKTINFGVIYGMGAQRFARSTGVSQA 822

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                L ++ Q      TF + +                A+ +  + T            
Sbjct: 823 EAKDFLSRYKQRYAKVFTFLELQ-------------ERLALSEGYVETLL---------- 859

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-- 571
                                      RR  +  R  +              R L     
Sbjct: 860 -------------------------GRRRPFHFDRNGL-------------GRLLGKDPM 881

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625
           D+  D +      +Q +R            +Q  S DI+   M    +          ++
Sbjct: 882 DIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKLTAADLPARLL 935

Query: 626 LTVHDEIVSETPDTPYFSVGTLC 648
           L VHDE+V E   T    V  L 
Sbjct: 936 LQVHDELVLEVDPTALEDVQQLV 958


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/509 (16%), Positives = 159/509 (31%), Gaps = 96/509 (18%)

Query: 117  NFSEHLTKMEEGKALIARFCKGSIDS--PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              + +L   +         C   + +   P      +    + L       +  A R L+
Sbjct: 559  GLAAYLLNSDANDYSWQTLCSAYLPTFVYPDTTDDTDEPNEYAL-------EAIAVRALY 611

Query: 175  KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              L  L           + E  L  +   +   G   D  L+ +    ++ E   +  ++
Sbjct: 612  PVLRELLHTDGSDDLFYELELPLIPVLLHMERNGIYCDKHLLAEQSRALSHELNAMSLEL 671

Query: 225  VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLI 278
             +L      +      L   LF + G+    + +       T    L+  ++      LI
Sbjct: 672  RRLAQQDF-NIDSPMQLSHVLFDVWGLPTKGLKKTRRGYYSTNAQTLASLSMADERVQLI 730

Query: 279  LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
            L+           L+ L   + SDGR+  T     A+ TGR S      QN+P +     
Sbjct: 731  LDYRERMKIKNTYLDALVHDIRSDGRIHSTFNQTIAA-TGRLSSSDPNLQNIPTRS---- 785

Query: 339  ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                     VR   +       +  D + IE R+LA ++ ++  
Sbjct: 786  --------------------SLGHRVRKAFVLPRNHLFLACDYSQIELRLLAHLSQDEHL 825

Query: 399  IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            I AF  G D +  T A+ F+   D+V+   R+  K +   + Y     G A   K     
Sbjct: 826  IHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVYGQQAFGLATSLKISRKE 885

Query: 455  CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
                + ++ +       F D                       Q +S +  ++      A
Sbjct: 886  AQEMIDRYFEAYPGVRKFLDESVQFAREHSYVPTMYGRKRHIAQIDSRNFQLRSFAERTA 945

Query: 494  VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            +   + G+A +++K A               + +LQ+  +L         E         
Sbjct: 946  MNHPMQGSAADIIKLAMIEVEKQFAQLGLASKLILQIHDELDFEVVPEELE--------- 996

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              V  +V R  +  V + +P    + Y+D
Sbjct: 997  -RVSSVVKRAMEGVVTLRVPLIAEISYAD 1024


>gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 876

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/602 (15%), Positives = 200/602 (33%), Gaps = 75/602 (12%)

Query: 14  QPLPKVGVWAYAEQAVIT---LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
             L +  +    E +      +  +        +    ++    SDL+ +L +       
Sbjct: 312 NDLDEATIHFELEDSNYLKDNILKFGLYTGEHHVVINADEIKQFSDLVNWLENPNTAKTV 371

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEHLTKMEEGK 129
           +++     +    L IDI + ++    + +       ++ +    ++ + +H  +     
Sbjct: 372 YDAKK-TYVVAHRLDIDIQNIQF-DVMLSSYIIDPSRTIDDVNSVVSLYGQHYVQDN--- 426

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
             +A + KG     P D     HV +        K +++   + + +   L+D E  L  
Sbjct: 427 --VAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQLKEYNQESLLADLELPLAE 484

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   + + G   D++ +  +++ I ++   L ++I +       +      L + LF   
Sbjct: 485 ILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETL 543

Query: 250 GIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
            + ++  ++    T   +L          D IL     S      +  L + +S D R+ 
Sbjct: 544 ELPVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISEDNRIH 603

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                  A +TGR S      QN+P +                              +R 
Sbjct: 604 TRFNQTLA-QTGRLSSVDPNLQNIPIR------------------------LEEGRKIRK 638

Query: 367 CIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
                S    ++ AD + IE RVLA I  ++   +AF NG DI+  T  K F+   D+V 
Sbjct: 639 AFKPTSTDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGADEVD 698

Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE-------- 473
              R   K +   + Y     G ++            +  +  +      +         
Sbjct: 699 SLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAK 758

Query: 474 -------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                              S +  ++      A+   + G+A +++K A        +Q 
Sbjct: 759 AQDFVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAM-------VQF 811

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            K++        +    +    +  VP+  +    + V  ++ S+  L    +K + SY 
Sbjct: 812 NKEVQHTKYHA-KLLLQVHDELIFEVPKDEVESFSQFVEDIMESALELDVP-LKVESSYG 869

Query: 581 NT 582
            T
Sbjct: 870 AT 871


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/518 (16%), Positives = 164/518 (31%), Gaps = 86/518 (16%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTN 103
           WD T+  A  + L+++L   T   + H+S  F+  L K  LG++         + +A   
Sbjct: 349 WDLTDTEAK-AVLIEFLESATYQKIVHDSKNFKHELLKVGLGLNGVC----FDTFIAAYL 403

Query: 104 GLPSSLKNACLAL-----------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
             P++       L           N    L K +  K  +    +  I++       A  
Sbjct: 404 LHPTNKSYDLAELEELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLA-- 461

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                L      ++    + + +      D E  L  +   +   G ++D + +    E 
Sbjct: 462 -----LSVTEAMKEALQEQNMTRLFY---DIEMPLIDVLFDMEVEGIKVDPEGLRSYGEE 513

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           +      L   I +       +      L + LF   GI     ++    +      +  
Sbjct: 514 LQGLLDTLTTSIYEAAGESF-NINSPKQLGVILFEKLGIPCAKKTKTGYSTAAE--VLEA 570

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           L  D  +           KL     + L   ++   ++  T      + TGR S      
Sbjct: 571 LKNDYPIVAQILEYRQYAKLKSTYVDGLLNVLTEQNKIHSTFN-QTITATGRLSSTEPNL 629

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386
           QN+P                                +R   + S      +  D + IE 
Sbjct: 630 QNIP------------------------VKFEMGKKIRQLFVPSSENHIFLDGDYSQIEL 665

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA ++G+   IKAF    DI+  T ++ F+ P + V+  QR+  K +   + Y   A 
Sbjct: 666 RVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNAKAVNFGIVYGISAF 725

Query: 447 V----FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481
                 K         +  + +       + D                       +  + 
Sbjct: 726 ALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQNGYVETLYHRKREIPEILAS 785

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           +  M++     A+   + GT+ +++K A    HQ + +
Sbjct: 786 NYNMREFGKRVAMNTPIQGTSADIIKIAMIRVHQKLKE 823


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 176/552 (31%), Gaps = 99/552 (17%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           AY+ D  P K+ +          L     D  +    HN   E I      GI +   + 
Sbjct: 365 AYSLDGPPDKILEI---------LKTICEDGNIKKYCHNGK-ETIRLLHRNGITLR--QL 412

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
              +++A     P+S       ++             L A         P          
Sbjct: 413 AFDTMIAAYLLNPASSNQDLEDISLEH----------LNAVLPGEDRKLPAQAHCIMELA 462

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           Q      +   +D         RL    + E  L  +   +   G  +D   +  + E +
Sbjct: 463 QLLDNKLKLYGQD---------RLF--YEIEIPLAGILAEMEIEGVAVDKKQLEAMSEEL 511

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI 270
            ++ +KL ++I +LT     +      L   LF    + ++  ++    T   +L     
Sbjct: 512 GRQIEKLADEIYRLTGREF-NINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADVLEELAA 570

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
              A   IL     +       + L+  ++   G+L  T      + TGR S      QN
Sbjct: 571 AHEAVAKILEYRQMAKLKSTYADGLAALINPETGKLHTTF-HQTVTNTGRLSSSDPNLQN 629

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388
           +P +                          A   +R   I       L+ AD + IE RV
Sbjct: 630 IPIR------------------------LEAGRLIRKVFIPGRPENLLLTADYSQIELRV 665

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           LA I+G+   IKAF NGEDI+  T A+ F    ++V++E R   K +   + Y     G 
Sbjct: 666 LAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYGLSDFGL 725

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HL 483
           A+  K         ++ +         + +    E+                      + 
Sbjct: 726 ARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNRRRYLPDLFSPNR 785

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQ 533
            ++      A+   + G+A +++K A    H          + +LQ+  +L      V  
Sbjct: 786 TIRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQVHDELIFDAPAVEI 845

Query: 534 EGGSISARRVAN 545
           +      +R   
Sbjct: 846 DQLKDLVKRCME 857



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R++G +   N  +Q  + DI+   M N  +          ++L VHDE++ + P     
Sbjct: 787 IRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQVHDELIFDAPAVEID 846

Query: 643 SVGTLCS 649
            +  L  
Sbjct: 847 QLKDLVK 853


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 125/367 (34%), Gaps = 58/367 (15%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L      +   G  +  + +    E +  + ++L+++I   T     +      L 
Sbjct: 589 IEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGETGEHF-NINSPKQLG 647

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297
             LF    +     ++       +   + +LA +  + +       + KL     + L+ 
Sbjct: 648 EILFGKMELPYGKKTKTG--YSTAADVLEKLAPEYPVVQKILDYRQLTKLKSTYADGLAG 705

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +  DGR+ GT      + TGR S      QN+P                          
Sbjct: 706 YIREDGRIHGTFN-QTITATGRLSSTEPNLQNIP------------------------VR 740

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +   G   V AD + IE RVLA ++G++  I+A+   EDI+  T ++ F
Sbjct: 741 MELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAITASEVF 800

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           + P+++V+  QR   K +   + Y     G ++            + ++ +       F 
Sbjct: 801 HVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSITRKEALEYINRYFETYPDVKKFL 860

Query: 474 DW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D                       +  S +   +      A+   + GTA +++K A   
Sbjct: 861 DRLVEEGKEKGYVTTMFKRRRPVPELSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNR 920

Query: 513 KHQGVLQ 519
               + +
Sbjct: 921 VDNRLRR 927


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/537 (17%), Positives = 179/537 (33%), Gaps = 85/537 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A+++D                 DL +    E    V+H    + ++     GI+  SK 
Sbjct: 95  IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSK- 147

Query: 93  WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++ T+++A       S  +    L          H     +GK               Y 
Sbjct: 148 YLDTAIMAYLLNPSESNYDLERVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 207

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           C R +H+   +              ++ K L    + E  L  + +++   G+ +D +++
Sbjct: 208 CGRCSHLFELKDKLMAFIE----EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLDRNVL 260

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +L E I +   ++ + I K       +      L  +LF    + ++  ++    T   
Sbjct: 261 KELSEKIDERISEILDKIYKEAGYQF-NVNSPKQLGEFLFEKLNLPVIKKTKTGYSTDSE 319

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            I+     +      +      +  + R+    +   A+ TGR S  
Sbjct: 320 VLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVAA-TGRISST 378

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382
               QN+P +E                             +R   I       +V AD +
Sbjct: 379 EPNLQNIPVRE------------------------EFGRQIRRAFIPRTKDGYIVSADYS 414

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V+ E R   KV+   + Y 
Sbjct: 415 QIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVNFGIIYG 474

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477
               G AK  K         +  + +  K    + +                       +
Sbjct: 475 ISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMNRRRYIPE 534

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
             S +   + Q    A+   + G+A +++K A    +Q           +LQ+  +L
Sbjct: 535 INSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDEL 591


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 101/593 (17%), Positives = 191/593 (32%), Gaps = 103/593 (17%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAM 53
             + +D ET S       L  V +      A     A+     + D+P ++         
Sbjct: 357 RLVAVDTETSSLDAMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQV----AMEDA 412

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            + L   L D++V+ V  N  ++  +  + +GID+               G    +    
Sbjct: 413 LAALKLLLEDDSVLKVFQNGKYDLNVLAR-VGIDVSPIEDTMVMSFDLDAGRGEGMGGGH 471

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                SE     +         C     + P+               EY   D + T  L
Sbjct: 472 GMDELSERHLLHKP--LAFKDVCGTGKKAIPF------GEVPLDRATEYAAEDADVTLRL 523

Query: 174 FKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           ++ L P    E          R L  +   +   G ++D   + KL E  A     L+++
Sbjct: 524 YRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLSEEFATTTASLEKE 583

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLAK 275
           I ++      +      L   LF   G               +  L+++        +A 
Sbjct: 584 IHEIAGQQF-AVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLENLAKDEAAKPIAD 642

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            ++  R   S       + L   ++   GR+  +    GA +TGR S      QN+P + 
Sbjct: 643 KVLEWR-HLSKLKSTYTDALQAQINPETGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIRT 700

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +  +G  L+ AD + IE R+ A +A 
Sbjct: 701 ------------------------EIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMAD 736

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
            D   +AFANGEDI+  T  + F     +V+++ RA  K +  A+ Y     G A   + 
Sbjct: 737 VDTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLEV 792

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                   +  + Q       +                       + +  S +   +   
Sbjct: 793 EPDEAQDMIDTYFQRFPGIQRYIMETLETVRERGYSETLFGRKTWFPRITSKNQAERQGS 852

Query: 490 PEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEG 535
              A+   + GT+ +++K+A        R +  G +++   + +     + +G
Sbjct: 853 ERAAINAPIQGTSADIIKRAMARMLPALRDEGLGNVRMLLQVHDELVFELPDG 905


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/565 (15%), Positives = 180/565 (31%), Gaps = 105/565 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCK 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +++   R + +K   + I          LA     P   +    +L  
Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                 +         F K    +             +++  E   +D +    L+K   
Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVL-EEKIKDQDMEELLYK--- 476

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 477 ----VEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R+  K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDL 524
               H+           +LQ+  +L
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDEL 831


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 169/534 (31%), Gaps = 92/534 (17%)

Query: 24  YAEQAVITLCAYAWDDE--PVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI 78
           Y +     LC +A ++E  P  +      T    + ++L +    + +    H    +  
Sbjct: 344 YLDD----LCIFACNEEYAPANIIFSEKLTC-ETVVNELREIFESKDIEKYGH----DLK 394

Query: 79  LFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
              K L    I  +  I  + +A     P+   +       SE   K       I     
Sbjct: 395 NLYKYLKSHGIELENVIFDTFIAAYILEPTR--STYTISELSEDKLKQSITPVEILYDKH 452

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDL 187
           G       D + +          E C   V A   L ++L P+             E  L
Sbjct: 453 GKRLEQGQDVSSS----------EVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPL 502

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +  RG+++D++ +    + +      L+ +I         +      L + LF 
Sbjct: 503 VEVLANMELRGFKVDVENLKAYSKELDSRLVILENEIYMQAGETF-NINSPKQLGVILFE 561

Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
             G+ +   ++    T   +L   +      + IL             + L   +  DG+
Sbjct: 562 KLGLPVGKKTKTGYSTSAEVLEQLSYKHEIVERILEYRQLMKLKSTYADGLLSVLEQDGK 621

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +         + TGR S      QN+P                                +
Sbjct: 622 IHSNFN-QTVTATGRISSTEPNLQNIP------------------------VKLEMGRKI 656

Query: 365 RSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   I +N    L+ AD + IE RVLA I G+   I+AF N EDI+ TT +K F  P ++
Sbjct: 657 RKVFIPTNSDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPEE 716

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE------ 473
           VS   R+  K +   + Y  G    +K            +  +         +       
Sbjct: 717 VSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVTKKEARKYIDDYLDKYSKVKEYMSDTVEK 776

Query: 474 ---------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                             + +S +  M+      A+   + G+A +++K +   
Sbjct: 777 GKEFGFVTTLYNRRRYLPELKSSNFNMRSFGERVAMNTPIQGSAADIIKISMVK 830


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/521 (17%), Positives = 180/521 (34%), Gaps = 83/521 (15%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNG 104
            +MP +++  + DE +  +  N   + I  +        +G DI    +I  S  + +  
Sbjct: 381 ESMPKEIVDLIEDEDIEKIGCNIKSDYINLRPYGIRLGKIGFDISIAEYIIDSKTSTSYD 440

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               + +  +    +     + +G            D   +     N +           
Sbjct: 441 FDV-IASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGIMNTLSGVVPKMRQII 499

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D +  + L+       D E  L  +   +   G  +D   + +L  L     K L+  I
Sbjct: 500 KDDDMEKLLY-------DVEIPLIEVLGDMEYIGIHVDKKTLDELGVLFNDRIKYLETKI 552

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             ++     +      L + LF    + ++  ++    +      + +L     +  + +
Sbjct: 553 YDISGEKF-NINSPKQLGLILFEKLELPVIKKTKTGYSTNAE--VLEKLRDKHPIIDMIT 609

Query: 285 SGSAILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               ++KL  T  E +++     DGR+  +     A+ TGR S      QN+P +     
Sbjct: 610 DYRTVVKLKSTYVEGINNLINPLDGRIHSSFNQAIAT-TGRISSTDPNMQNIPVRT---- 664

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  G KLV AD + +E RVLA ++G++  
Sbjct: 665 --------------------DLGRQLRRVFVAGQGSKLVDADYSQVELRVLADMSGDEDM 704

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF  G DI+  T ++ F  P D+VS E R+  K +   + Y     G AK      + 
Sbjct: 705 IEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIYGKSDFGLAKDLDISIAK 764

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------A 493
               ++ +         F D   +++            +   PE               A
Sbjct: 765 AKEYIENYFARFPKIKGFMDHIVSDAEEKGYSTTIFGRRRYIPEIKSSNFVEKNRGIRAA 824

Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
           +   + G+A +++K A    H            +LQ+  +L
Sbjct: 825 MNAPIQGSAADIIKIAMVNVHNRLEEEGLKSNLILQVHDEL 865



 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+   M        + G    ++L VHDE++ E+P      V  L
Sbjct: 829 IQGSAADIIKIAMVNVHNRLEEEGLKSNLILQVHDELIVESPIEEVERVRVL 880


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 151/489 (30%), Gaps = 116/489 (23%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L  +   E  L  +   +   G  +D   +      +      L E I     G   +
Sbjct: 458 QLLELMDSLELPLIPVLADMEAVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGSF-N 516

Query: 235 SRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            R    L   LF    +     + G    T + +L   +      D IL           
Sbjct: 517 IRSAQQLGDILFNQLELPAAKKTRGGQASTSQEVLEKLSGQHPIIDTILEYRKLEKLRST 576

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L  L   +  DGR+  T     A+ TGR S      QN+P +                 
Sbjct: 577 YLEPLPRLIGKDGRVHTTFNQL-ATATGRLSSSNPNLQNIPIR----------------- 618

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G     +RSC  AS G  L+ AD + +E RVLA  + +   + AF  G DI+ 
Sbjct: 619 -------GSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHT 671

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T +  +    ++V+ ++R   K +   L Y  G +    +A      L +  + ++   
Sbjct: 672 RTASLLYEKSQEEVTADERRNAKTINFGLIYGMGPQ---KLAQELNTTLNEAKKFIQ--R 726

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
            FE  +  +  +  ++    E+     + G                  +L  D+      
Sbjct: 727 YFEHLQAIKKFYDQVEHSAKEYGYVTTIAG----------------RRRLLPDI------ 764

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                  H  ++ +   + R+ +                     
Sbjct: 765 -----------------------HSENIQLQALARRQAI--------------------- 780

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644
                     I+Q  + DI+   M          K    ++L VHDE+V E P+     V
Sbjct: 781 --------NTIIQGSAADIIKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAPEDNAKEV 832

Query: 645 -GTLCSLMT 652
              +  LM+
Sbjct: 833 GKRIAMLMS 841


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/583 (14%), Positives = 184/583 (31%), Gaps = 105/583 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCK 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +++   R + +K   + I          LA     P   +    +L  
Sbjct: 376 EMFEGKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                 +         F K    +             +++  E  K      +++ + L 
Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            +   E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R+  K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
               H+           +LQ+  +L         E      ++
Sbjct: 807 MVNVHKKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 113/643 (17%), Positives = 201/643 (31%), Gaps = 146/643 (22%)

Query: 49  EQSAMPSDL-----LQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
            + ++P  L     L  L              N+ ++R++  +     I  +  +  ++L
Sbjct: 432 SEDSIPEQLSLETVLTALAPWLASSNHPKTLQNAKYDRLILLRH---GIALEGVVIDTLL 488

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           A    L  +     L L               L+ +  K +    P +            
Sbjct: 489 ADY--LRDASAKHGLELMAEREFGFQPTSFTDLVGK--KQTFADVPLEPAS--------- 535

Query: 159 FGEYCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLV 206
              YC  DV  TR L             +L+PL +  E+ L  +   +   G RID+  +
Sbjct: 536 --LYCGMDVHVTRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYL 593

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
             L E +    ++L+ D           +     L   LF   G+D              
Sbjct: 594 QGLSEEMGSTLQQLESDAKAAAGVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTD 652

Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRW 320
            + + +L  D  +  L      + KL     + L + V +  GR+         + TGR 
Sbjct: 653 ATVLEKLGNDHPVVPLVLDHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRL 711

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P +                           S  +R   +   G  L+ AD
Sbjct: 712 SSSNPNLQNIPVRT------------------------EYSRRIRKAFLPQEGWTLLSAD 747

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+L  ++GE    +A+  G+D++  T     +   D+VS ++R +GK +   + 
Sbjct: 748 YSQIELRILTHLSGEKVLQEAYRGGDDVHALTARLLLDK--DEVSPDERRLGKTINFGVI 805

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y  GA+ F   A   G+   +  + +        ++Q         +     A+    + 
Sbjct: 806 YGMGAQRF---ARETGVSQSEAKEFLVK------YKQRYPKVFAFLELQERLALSRGYVE 856

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDV 558
           T                                    +  RR  +  R  + R   K  +
Sbjct: 857 T-----------------------------------ILGRRRPFHFDRNGLGRLLGKDPL 881

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I L  +RR                 +Q +R            +Q  S DI+   M    
Sbjct: 882 EIDLDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQ 922

Query: 619 KN------GYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654
                      ++L VHDE+V E  PD    +   +   M + 
Sbjct: 923 DALLRQGLPAQLLLQVHDELVLEVAPDALETTRDLVVRTMEQA 965


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/573 (17%), Positives = 189/573 (32%), Gaps = 109/573 (19%)

Query: 5   FIDIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             D ET S      K+  +++A   E+A     A+++   P ++     ++A+ S    Y
Sbjct: 378 SFDTETTSIDSKSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAAKAAIDSLFRGY 437

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                   V  N  ++  + K    I+ P  R+  T VLA      +++    ++  +  
Sbjct: 438 -------VVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISPRYL- 488

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                         F         +     +    +         D   T  L+ +L  L
Sbjct: 489 --------GYETVHFGDVVKKGETFASVELDAATIY------ASEDAWVTLRLYFKLKGL 534

Query: 181 SD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +          E     +   +   G +ID++++ +L     +  + L ++I +L    
Sbjct: 535 LEPALFKLAQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELCGEQ 594

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLA 283
             +      L   LF   G+     ++         LK + + H  + ++     L +L 
Sbjct: 595 F-NINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYRELFKLQ 653

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S+    L    L++A     R+R      G + TGR +      QN+P +          
Sbjct: 654 STYCEPLLQLALADA---QNRVRSNFLQTG-TATGRLASKNPNLQNIPAR---------- 699

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G  +  VR C +A  G  L+  D + IE R+LA  + +   + AF 
Sbjct: 700 --------------GTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAAFR 745

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDL 459
             EDI+  T    F           R I K +   L Y  GA           +     +
Sbjct: 746 ADEDIHARTAISIFGDAQ----PAHRTIAKSINFGLIYGMGAGKLSDSLGIARAEAKGYI 801

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++     +   F                       ++ A + +  +   Y   AV  K 
Sbjct: 802 ERYFAAFSTIKEFLQSIKSDAKADGYVSTLFGRRRYFDFANARNNMVYASYEREAVNTKF 861

Query: 499 IGTACELVKKAWRAKHQ-------GVLQLWKDL 524
            G+A +++KKA              +LQ+  +L
Sbjct: 862 QGSAADIIKKAMVDISPLLNGEARLILQIHDEL 894


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 72/502 (14%)

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +                          A   +      E              D+   + 
Sbjct: 383 LAIADVKNAMQYIPNVNQSVCFDTIVAAYLLNPLKNDYESADIAREYLDILIDDNQIDEA 442

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            ++ +            RD     E+ +      + E  L      +   G ++  + + 
Sbjct: 443 QKSCYEAYTAYESSKILRDRLKETEMEQLF---DEIEMPLVFTLYDMEQNGVKVAAEALH 499

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
              E + Q+   L++DI +LT     +      L + LF   G+     ++       S 
Sbjct: 500 IYGEQLGQKIVDLEKDIYELTGETF-NINSPKQLGVILFEKLGLPHGKKTKTG--YSTSA 556

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA +  +         + KL     + L+  +  DGR+ G       + TGR S 
Sbjct: 557 DILDKLAPEYPVVSKILEYRQLTKLKSTYADGLAGYIKDDGRIHGKFN-QTITATGRISS 615

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   I  +G   V AD +
Sbjct: 616 TEPNLQNIP------------------------VRMELGRLIRKVFIPEDGYVFVDADYS 651

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA  +G++  I A+    DI+  T ++ F+TP ++V+  QR   K +   + Y 
Sbjct: 652 QIELRILAHCSGDEQLINAYKEARDIHRITASQVFHTPFEEVTDLQRRNAKAVNFGIVYG 711

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477
               G ++            ++ + +   S   F D                       +
Sbjct: 712 ISSFGLSQDLSITKKEAAQYIESYFETYPSIKGFLDDAVEHAKENGYVTTVFGRRRPVPE 771

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT-E 526
             S +   +      A+   + GTA +++K A    ++           VLQ+  +L  E
Sbjct: 772 LSSSNFMQRSFGERVAMNAPIQGTAADIMKIAMNGVNRRLKENNMRSKLVLQVHDELLIE 831

Query: 527 GFACVVQEGGSISARRVANVPR 548
            +   +++   I +  + N  +
Sbjct: 832 AYEEELEDVKEILSHEMVNAAK 853


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/563 (16%), Positives = 197/563 (34%), Gaps = 74/563 (13%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +D E   +    + +  P +L+ +L DET     H++    I  K++   DI  +  +  
Sbjct: 338 YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DIAIENVVFD 393

Query: 97  SVLARTN-GLPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           ++LA        ++++    + +F +   + +     ++ + KG     P D     H+ 
Sbjct: 394 TMLASYIIDPSRTIEDVQSVMTHFDQTFVQDD-----VSVYGKGKSFHIPEDDILDKHIA 448

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           +        +  +    E  ++   LS+ E  L L+   +   G   D+D + +++ +I 
Sbjct: 449 SILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDTLKEMETVIQ 508

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271
            E  +L E I +       +      L + LF    + ++  ++    T   +L      
Sbjct: 509 TELDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAVDVLEKLQNA 567

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               D IL     S      +  L + +  DGR+        A +TGR S      QN+P
Sbjct: 568 HPIIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSSVDPNLQNIP 626

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
            +                              +R    ++     ++ AD + IE RVLA
Sbjct: 627 IR------------------------LEEGRKIRKAFKSTHEDYVILAADYSQIELRVLA 662

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            I G+    +AF + ED++ TT  K FN    +V+   R   K +   + Y     G ++
Sbjct: 663 HITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNFGIVYGISDYGLSQ 722

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485
                       +  +  +      + D                          S +  +
Sbjct: 723 SLGITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNL 782

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +      A+   + G+A +++K A        +Q  +++ +      Q    +    +  
Sbjct: 783 RGFAERTAMNSPIQGSAADIIKLAM-------VQFHREVQKTSFKA-QLLLQVHDELIFE 834

Query: 546 VPRLVMRRHKRDVHIVLPSSRRL 568
           VP+  +    + V  ++  + +L
Sbjct: 835 VPKDEVDEFGKFVEEIMAHALQL 857


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 137/380 (36%), Gaps = 65/380 (17%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +   G  +DLD        +  E  +L  D+ K   G   + R +  L  
Sbjct: 471 EMPLIPVLADMEAAGIAVDLDAFAAFLREVQGELDRLTRDVYKAAGGEF-NIRSSQQLAE 529

Query: 244 YLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            LF   G+     ++G    T + +L   +      D IL            L  L   V
Sbjct: 530 LLFGTLGLPTGGKTKGGQTSTAQDVLEKLSGRHPVVDAILEFRKLEKLRSTYLEPLPRLV 589

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  T     A+ TGR S      QN+P                          G 
Sbjct: 590 DGAGRIHTTFNQL-ATATGRLSSSNPNLQNIP------------------------VRGD 624

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R+C  A+ G +LV AD + +E RVLA ++ +   + AF  G DI+  T +  ++ 
Sbjct: 625 LGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDV 684

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             D+VS +QR   K +   L Y  G    A+  +   +     ++++   ++    F D 
Sbjct: 685 AQDQVSTDQRRNAKTINFGLIYGMGPQKLAQELRIPLTEAKAFIERYFSKLQKLREFYDE 744

Query: 476 EQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            +  +  L                      ++ Q    A+   + G+A +++K A  A H
Sbjct: 745 AETTARELGYVTTMAGRRRLLPEIHSENTQLKSQARRQAINTLIQGSAADIIKLAMLAAH 804

Query: 515 ----------QGVLQLWKDL 524
                     + +LQ+  +L
Sbjct: 805 ADPELRALNARLILQVHDEL 824


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 92/537 (17%), Positives = 179/537 (33%), Gaps = 85/537 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A+++D                 DL +    E    V+H    + ++     GI+  SK 
Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSK- 383

Query: 93  WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++ T+++A       S  +    L          H     +GK               Y 
Sbjct: 384 YLDTAIMAYLLNPSESNYDLERVLKRYLKVDILSHEEVFGKGKDRRRYEEVSEEVMAEYI 443

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           C R +H+   +              ++ K L    + E  L  + +++   G+ +D +++
Sbjct: 444 CGRCSHLFELKDKLMAFIE----EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLDRNVL 496

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +L E I +   ++ + I K       +      L  +LF    + ++  ++    T   
Sbjct: 497 KELSEKIDERISEILDKIYKEAGYQF-NVNSPKQLGEFLFEKLNLPVIKKTKTGYSTDSE 555

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            I+     +      +      +  + R+    +   A+ TGR S  
Sbjct: 556 VLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVAA-TGRISST 614

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382
               QN+P +E                             +R   I       +V AD +
Sbjct: 615 EPNLQNIPVRE------------------------EFGRQIRRAFIPRTKDGYIVSADYS 650

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V+ E R   KV+   + Y 
Sbjct: 651 QIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVNFGIIYG 710

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477
               G AK  K         +  + +  K    + +                       +
Sbjct: 711 ISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMNRRRYIPE 770

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
             S +   + Q    A+   + G+A +++K A    +Q           +LQ+  +L
Sbjct: 771 INSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDEL 827


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/517 (14%), Positives = 166/517 (32%), Gaps = 90/517 (17%)

Query: 38  DDEPVKLWDRTEQS-AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           + E V +++  +   A    L  +L +E +  + HN  F  ++ K+     +        
Sbjct: 344 NGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY---GLKFDGVRGD 400

Query: 97  SVLARTNGLPSSLKNACLALNF----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           ++L      P           F         KM+ G                    +  H
Sbjct: 401 TLLLSYVLDPGFSGETLSEHLFHYLGEVVDEKMDPG--------------LAVRGLKKLH 446

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
               +  G    +D+     L+K        E  L  +   +   G ++D  ++ ++ + 
Sbjct: 447 QVLEEKLGS---QDL---VNLYKV------VELPLSPVLADMEFTGIKVDPRILAEISQE 494

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           +A    +    I ++      +   T  L   LF   G+  V  ++    T   +L    
Sbjct: 495 LALRIAEDQARIYQVAGQEF-NINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELY 553

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +    + I+     +      ++T    +    GR+    +    + TGR S      Q
Sbjct: 554 GSHEIIEHIVEYRTLAKLKSTYVDTFPGYIHPETGRVHTVFK-QAVTATGRLSSVEPNLQ 612

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P +                              +R   +       L+  D + I+ R
Sbjct: 613 NIPIR------------------------MEEGRRIRKAFVPGDENHILLSCDYSQIDLR 648

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443
            LA ++G++  I+ F  G DI+  T ++ F  P+D+V+ + R   K +   + Y     G
Sbjct: 649 SLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNFGIVYGISDFG 708

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------H 482
            A+            ++++  +      +     A                        +
Sbjct: 709 LARGTGVTREEAKAYIERYLDSYPGVRRYMQEVVAMGREKGYVSTVLGRRRYLPDLLSSN 768

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             ++      A+   + GT+ +++K A  + ++ + +
Sbjct: 769 RTVRSMAERMALNAPIQGTSADIIKLAMLSVYRELKR 805


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/505 (14%), Positives = 161/505 (31%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P+  +   + LA+                       + + +     + KG
Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILLTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          +  ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF   G+ L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA++SDG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIASDGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             +Q + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V      + R++  
Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c]
 gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 252

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 129/258 (50%), Gaps = 13/258 (5%)

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           ++KEQR IGKV ELALGY GG   F   A+   +DL+  +            E  E    
Sbjct: 1   MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQ-AVFPPLLLQEATELLEW 59

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
              +  P F + D+    AC++ K+AWR  H  +   W+ L       +    +      
Sbjct: 60  TKANHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT--- 115

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKL 597
                + ++  +  + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL
Sbjct: 116 --CCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA+SRD+L   M      GY IVLTVHDEI++E  D P F+   L +LM   P W
Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A+GLPL AEG++  RYRK
Sbjct: 234 AEGLPLAAEGFDTYRYRK 251


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/561 (16%), Positives = 170/561 (30%), Gaps = 79/561 (14%)

Query: 50  QSAMPSDLLQYL----RDETVMCVAHNSLFERI--LFKKTLGIDIPSKRWICTSVLARTN 103
               P   L+ L     D   +  A  + F+ +  L  +   +   +KR++       + 
Sbjct: 341 GGTAPFVRLEALALVYEDACRIVRAGTAHFDAVTALLAERPVVLWNAKRYVHA---GLSI 397

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           G  +        L   E   +  E  A     C G     P D +     +         
Sbjct: 398 GADAFDLELGDYLLHPEESRRDIERTAFA--LC-GDAAEAPADLSDEQRAEREAQLAARL 454

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              ++A       L    D E  L  +   +   G  ++   + + +         L E+
Sbjct: 455 HSPLQAALAEAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEE 514

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRL 282
           I  L      +      L   LF    +      + T      +   + +L     +   
Sbjct: 515 IHALAGMEF-NISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDK 573

Query: 283 ASSGSAILKLN-TLSEAVS-----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
             +     KL  T  + +        GR+         + TGR S      QN+P +   
Sbjct: 574 VLTYRMWTKLRSTYLDGIGALIRPETGRVYTNFN-QTVTATGRLSSSDPNLQNIPVRT-- 630

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395
                                      VR+      G   L+ AD + IE R+LA ++G+
Sbjct: 631 ----------------------EEGRAVRALFEPGEGYDVLLSADYSQIELRILAHMSGD 668

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I AF +G+DI+  T A+ F  PID V+ EQR   K +   + Y     G ++  +  
Sbjct: 669 ATLIDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVYGLSDYGLSRDLRIP 728

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------HLWMQDQYPE 491
                  ++++ +       F D   A++H                      +MQ  + E
Sbjct: 729 RKEAAGYIERYFERYHGVREFLDKTVADAHANGYVTTLYGRRRELSAINSRNYMQRSFAE 788

Query: 492 -FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A+   + GTA +L+K A    H        D         +    +    V       
Sbjct: 789 RMAMNTPIQGTAADLIKIAMIRAH--------DALHAAGVKSRILLQVHDELVLEAAEAE 840

Query: 551 MRRHKRDVHIVLPSSRRLVYS 571
           + +    +   +  +  L   
Sbjct: 841 IAQVSGLLRTAMSGAAELAVP 861



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYF 642
           +R++  ++  N  +Q  + D++   M  A    +       I+L VHDE+V E  +    
Sbjct: 783 QRSFAERMAMNTPIQGTAADLIKIAMIRAHDALHAAGVKSRILLQVHDELVLEAAEAE-- 840

Query: 643 SVGTLCSLMTKNPSWAKGL--PLKAE 666
            +  +  L+    S A  L  PL  +
Sbjct: 841 -IAQVSGLLRTAMSGAAELAVPLAVD 865


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 151/442 (34%), Gaps = 61/442 (13%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           H+            +     E++       + E  L     ++   G R+  + +    E
Sbjct: 386 HLAYTAYATREPIENALKETEMWNVYR---EIELPLIFTLDSMEKWGIRVKGEELKSYGE 442

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268
            +     +L++ I +       +      L + LF   GI     ++    T   IL   
Sbjct: 443 KLQVRIAELEKLIYEQAGEEF-NINSPKQLGVILFEKMGIPGGRKTKTGYSTAADILEKL 501

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
              Q   + IL     +       + LS  + +DGR+  T      + TGR S      Q
Sbjct: 502 APEQPIVNDILEYRQLTKLKSTYADGLSAVIEADGRIHSTFN-QTITATGRISSTEPNLQ 560

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R   +  +G   + AD + IE RV
Sbjct: 561 NIP------------------------VRMELGRLIRKVFVPEDGYVFLDADYSQIELRV 596

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           LA ++G++  I+A+   EDI+  T ++ F+ P D+V+  QR   K +   + Y     G 
Sbjct: 597 LAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGL 656

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483
           ++            ++++ +       F D                       + +S + 
Sbjct: 657 SQDLSITRKEAAEYIEKYFETYPKIKGFLDGLVADGKEKGYVSTMLGRRRPIPELKSGNF 716

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR- 542
             +      A+   + GTA +++K A    +Q + +  + L       V +   I  ++ 
Sbjct: 717 MQRSFGERVAMNSPIQGTAADIIKIAMNRVYQRLKE--EGLQSRLVLQVHDELLIETKKE 774

Query: 543 -VANVPRLVMRRHKRDVHIVLP 563
            V  V R++    K  VH+ + 
Sbjct: 775 EVETVSRILEEEMKGAVHLSVE 796



 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M    +   + G    +VL VHDE++ ET      
Sbjct: 718 QRSFGERVAMNSPIQGTAADIIKIAMNRVYQRLKEEGLQSRLVLQVHDELLIETKKEEVE 777

Query: 643 SVGTLCS 649
           +V  +  
Sbjct: 778 TVSRILE 784


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 126/698 (18%), Positives = 217/698 (31%), Gaps = 161/698 (23%)

Query: 5    FIDIETRSPQP----LPKVGVWAYAEQAVIT---LCAYAWDDEPVKLWDRTEQ--SAMP- 54
             +D ET S  P    L  VGV A+ E           +       +  D      + +P 
Sbjct: 419  ALDTETTSLNPFRAELVGVGV-AWGEGPADLAYIPIGHRVGSSG-ETPDLLSPPPAQLPL 476

Query: 55   SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
              +L  L              N+ ++R++  +     +P +  +  ++LA    L  +  
Sbjct: 477  DQVLTALAPWLGSAQHPKALQNAKYDRLILLRH---GLPLEGVVMDTLLADY--LRDANA 531

Query: 111  NACLALNFSEHLTKMEEGKALI----ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
               L L    +   +    + +    A F    I                +    YC  D
Sbjct: 532  KHGLELLAQRNFGFLPTSYSELVPKGADFSAVPI----------------EQAALYCGMD 575

Query: 167  VEATREL-------FKRLIP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            V  TR L        + L P     L   E  L  +   +   G RID   + +L   + 
Sbjct: 576  VHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAELSSELG 635

Query: 215  QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
            Q  ++L+ D           +     L   LF   G+D     +         + + +L 
Sbjct: 636  QTLQRLEADAKAAAGTDFNLA-SPKQLGELLFDTLGLDRKKSRKTKTGWSTDAAVLEKLE 694

Query: 275  KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                +  L      + KL     + L   +    GR+         + TGR S      Q
Sbjct: 695  DAHPVVSLVLEHRTLSKLKSTYVDALPALMEPETGRVHTDFN-QAVTATGRLSSSNPNLQ 753

Query: 329  NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            N+P +                           S  +R   +   G +L+ AD + IE R+
Sbjct: 754  NIPIRT------------------------EFSRRIRKAFLPEAGWQLISADYSQIELRI 789

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            LA ++GE+  ++A+  G+D++  T         D+VS ++R +GK +   + Y  GA+  
Sbjct: 790  LAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIYGMGAQ-- 845

Query: 449  KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                                       FA +  +  T  +    
Sbjct: 846  ------------------------------------------RFARETGVSQTQAKEFLS 863

Query: 509  AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR---VANVPRLVMRRHKRDVHIVLPSS 565
             ++ ++  V     +L E  A       +I  RR     +   L     K  + I L  +
Sbjct: 864  KYKQRYPKVFAFL-ELQERLALSRGYVETILGRRRPFAFDPSGLGRHLGKDPLEIDLDIA 922

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG 621
            RR                 +Q +R            +Q  S DI+   M         +G
Sbjct: 923  RR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQLAASG 963

Query: 622  YD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
                ++L VHDE+V E       +V TL    M +   
Sbjct: 964  LPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE 1001


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 167/501 (33%), Gaps = 66/501 (13%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           TE++        + R +       ++    +      G+D+    +     +A       
Sbjct: 349 TEKAVKSDAFRAFARSQEKKKWLFDAKRAVVALA-WHGVDLNGVDF--DLQMASYL---- 401

Query: 108 SLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            L  +  +   S+  T+   G        + KG+  S P +   A H+          K 
Sbjct: 402 -LDPSLSSHEISDIATRKGTGGVAEDEAVYGKGAKRSLPEEAALAEHLCRKANAMFTLKS 460

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +E      ++L  L   E  L ++   +   G R+D + + ++ + ++     L++ I 
Sbjct: 461 TLEDELAQNEQLELLKKLEMPLSVVLGRMEKEGVRVDREQLEEMGKDLSDRLNTLEKAIH 520

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           K       +      L + LF   G+  V  ++    T   +L     T    + +L   
Sbjct: 521 KEAGEPF-NINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLAGTHPIIEHLLLYR 579

Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                    +  L + +    G++         ++TGR S      QN+P +        
Sbjct: 580 QLGKLYSTYIEGLLKVIDSETGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------- 630

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +AS  G K+V AD + IE RVLA I+G++   +
Sbjct: 631 ----------------LEEGRKIRKAFVASKEGWKIVAADYSQIELRVLAHISGDERMKE 674

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T    F+   ++V+   R   K +   + Y     G ++          
Sbjct: 675 AFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAK 734

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             + ++  +      + +                       + +S +   +      A+ 
Sbjct: 735 DFIDRYLASYPQVKAYMENVVKEAKEKGYVQTLLARRRYLPELKSRNFNQRSFAERTAMN 794

Query: 496 DKLIGTACELVKKAWRAKHQG 516
             + GTA +++K+A     + 
Sbjct: 795 TPIQGTAADIIKRAMVKMSEA 815


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 101/610 (16%), Positives = 202/610 (33%), Gaps = 109/610 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L D        N+ F+R++  +  GI +    +  T + +       S     L
Sbjct: 461 EALRPILEDNNYPKALQNAKFDRLIL-RCQGIKLAGVVF-DTMLASYVIDPEGSHNLTAL 518

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCK-----RDV 167
              + E   K+   K+      K    +       AN+  +  +  F    K      ++
Sbjct: 519 CKEYLED-PKLTA-KSYKDLVSKEQTIADLAIPIVANYCGMDVYTTFQLVSKLREKLEEL 576

Query: 168 EATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +A + L   L  L    E+ L  +   +  +G RI+ + + +L + +  + + +++   +
Sbjct: 577 DAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELENKLQLIEQTAYE 636

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +      S      L   LF    +D+              + + +L  D  + +     
Sbjct: 637 VAGEEF-SLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKLQDDHEVVKTILEH 695

Query: 287 SAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             + KL     + L + V  D GR+        A+ TGR S      QN+P +       
Sbjct: 696 RTLSKLKSTYVDALPQLVRPDTGRVHTDFN-QAATGTGRLSSSNPNLQNIPIRT------ 748

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +   G  +V AD + IE R+LA +  E   ++
Sbjct: 749 ------------------EFSRQIRKAFLPKEGWLMVSADYSQIELRILAHLTQEPVLVE 790

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A+   +D++  T    F    + V+ ++R +GK +   + Y  GA              Q
Sbjct: 791 AYKTNQDVHTVTAKLLFEK--ETVTPDERRLGKTINFGVIYGMGA--------------Q 834

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +F+++V+  S  +     E  +      +      + L     + + + + +   G  + 
Sbjct: 835 RFARSVEGVSPTQAKLFIERFNQRYSRVF------EYLNRVKKDAIAQGYVSTILGRRRY 888

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
           +K                           V +    DV  +  ++ + +           
Sbjct: 889 FK----------------------FEGESVRKLKDSDVQDINLATLKNI----------- 915

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSET 636
               +QL+R            +Q  S DI+   M             ++L VHDE+V E 
Sbjct: 916 GQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILKDRQARLLLQVHDELVLEV 969

Query: 637 PDTPYFSVGT 646
           P   +  +  
Sbjct: 970 PPDEWEELQH 979


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/496 (15%), Positives = 152/496 (30%), Gaps = 88/496 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             + + L D TV    H++           G+ + S     T +          L     
Sbjct: 431 EVVRRALADPTVPKAVHDAK-----AAMHAGLPLESVE-HDTMLYEYL------LDPTYT 478

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +          ++ R       + P +     H    +L        +    +++
Sbjct: 479 TYRLPD---------VVLRRLNLKLAGTLP-EAADMTHRLTTKLHKLVEDGGL---MKVY 525

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +      D +R L  +   +   G ++D D++ ++   + ++   L   I  L+     +
Sbjct: 526 E------DIDRPLVTVLYAMEAAGVKLDCDVLAEMSTRLQRDADALARKIYGLSGQEF-N 578

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L   LF    +              +   +  LA +  + +L        KL  
Sbjct: 579 INSPKQLGDVLFNKLNLPKPVKYGKGKTISTAVDVLEGLAGEHEVPKLVLEYRQFTKLKS 638

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L     +  GRL  T     A+ TGR S      QN+P +               
Sbjct: 639 TYVDALPNLCHAGTGRLHTTFA-QAATSTGRLSSVNPNLQNIPIRT-------------- 683

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R+  +A  G  L+ AD + IE R+LA  + +   + A+ N  DI
Sbjct: 684 ----------ELGREIRAAFVAEKGNVLLAADYSQIELRLLAHFSQDRLLVDAYNNDRDI 733

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T ++ F  P   +  E R   K +   + Y     G ++            ++ + +
Sbjct: 734 HALTASEVFGVPPMMIDAEHRRRAKAVNFGIVYGISPFGLSQQLGIDTKESKRYIESYFE 793

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A    L GTA 
Sbjct: 794 RYSGVREWLNSVLEQVRKDEKVSTLFGRIRPIPDIHSRNPNLRGFAERTATNTPLQGTAA 853

Query: 504 ELVKKAWRAKHQGVLQ 519
           +L+K A    H+ +++
Sbjct: 854 DLIKLAMIRIHRDLIE 869



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 603 QAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCS 649
           Q  + D++   M    ++         ++L VHDE+V E P      V  L  
Sbjct: 849 QGTAADLIKLAMIRIHRDLIERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQ 901


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/505 (14%), Positives = 159/505 (31%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P   +   + LA+                         + +     + KG
Sbjct: 381 VLLSHYGIELPVASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          +  ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPEKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF   G+ L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA+++DG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             ++ + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V      + R++  
Sbjct: 829 LLQVHDEIVLEVPADELTAVRQLVK 853



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P     +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IKLA--VPLVAD 869


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 127/382 (33%), Gaps = 58/382 (15%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +E        +      E  L  +   +   G  +D   + + +    +    L  +I  
Sbjct: 457 METELAAQGLMQLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHT 516

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L   LF   G+    + +       +   +  L     +     + 
Sbjct: 517 LAGAEF-NISSPKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTY 575

Query: 287 SAILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               KL  T  + + +      GR+  +      + TGR S      QN+P +       
Sbjct: 576 RMWTKLRSTYLDGIGALIRPATGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT------ 628

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR+      G   L+ AD + IE R+LA ++G+   I
Sbjct: 629 ------------------EEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLI 670

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +G+DI+  T A+ F  P+D V+ EQR   K +   + Y     G A+         
Sbjct: 671 DAFRHGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREA 730

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH--------------------HLWMQDQYPE-FAV 494
           G  + ++ +      TF D   A++H                      +MQ  + E  A+
Sbjct: 731 GGYIDRYFERYHGVRTFLDKIVADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAM 790

Query: 495 KDKLIGTACELVKKAWRAKHQG 516
              + GTA +L+K A    +  
Sbjct: 791 NTPIQGTAADLIKIAMVRAYDA 812


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 163/473 (34%), Gaps = 73/473 (15%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD-CTRANH 152
           I  + +      P   +  C  +   ++ + M +G+A +  F K  +     +       
Sbjct: 395 IADAAIGAYLLNPLKGQYPCEDI-AKDYASLMIKGRAEL--FGKAPLAKVMEEQPEELAQ 451

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
              +  +       V   +    +++ L  D E  L      + + G R++   +    E
Sbjct: 452 YACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVYTLYDMQEVGIRVNAQELKAYGE 511

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +     +L+++I +       +      L + LF    +     ++       +   + 
Sbjct: 512 ELYVRIVELEQEIYRDAGEEF-NINSPKQLGVILFEKLKLPGAKKTKSGF--STAADVLE 568

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           +LA D  +         + KL     + L+  +++DGR+ GT      + TGR S     
Sbjct: 569 KLAPDYAIVAKILEYRQLAKLKSTYADGLAGFIAADGRIHGTFN-QTITATGRISSTDPN 627

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                              +R   IA  G  L+ AD + IE 
Sbjct: 628 LQNIPVRT------------------------ELGRLLRKVFIAKEGYVLIDADYSQIEL 663

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           RVLA ++G++  I AF +  DI+  T ++ F+ P D+V+  QR   K +   + Y     
Sbjct: 664 RVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISAF 723

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------- 489
           G ++         G  + ++ Q       F D    E+      +               
Sbjct: 724 GLSEDLHISVKEAGEYIDKYFQTYPKVKDFLDNAVKEAKEKGYAETLFHRRRPVPELKSG 783

Query: 490 --------PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
                      A+   + GTA +++K A    ++           +LQ+  +L
Sbjct: 784 NFMQRSFGERVAMNSPIQGTAADIIKIAMIRVNERLRAEQFQSRLILQIHDEL 836



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M          +    ++L +HDE++ E   +   
Sbjct: 787 QRSFGERVAMNSPIQGTAADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVE 846

Query: 643 SVGTLCSL 650
           +V  L + 
Sbjct: 847 AVKELLAQ 854


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 99/541 (18%), Positives = 174/541 (32%), Gaps = 97/541 (17%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +     +AHN+ F+ +   K  GI +    +  TS+ A      S       A     
Sbjct: 392 LLEGGPKKIAHNAKFDYMALYKH-GIRVSPL-YFDTSIAAFLLNETSVGLKDLAATRLGI 449

Query: 121 HLTKM----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +T +     +GK           +   Y C  A+    ++LF    K      R+L   
Sbjct: 450 QMTTIDSLIGKGKNQKTMLEVSVDECARYACADADMT--FRLFTMLEKE--IVERKLQDL 505

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              L   E  L  +   +   G  ID D +  L   + ++ + ++  I ++      + +
Sbjct: 506 FYTL---EMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEIAGYEF-NLK 561

Query: 237 QTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L  +LF   G+           T  + L   +      DLIL+    +      ++
Sbjct: 562 SPQQLSKFLFQDLGLKGIRKTSKGYSTDAATLEALSGQHPVIDLILSYRQLTKLKDTYVD 621

Query: 294 TLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            L   VS S GRL        A  TGR +      QN+P +                   
Sbjct: 622 ALPLMVSRSTGRLHTNFSQTSAV-TGRLASSDPNLQNIPIRS------------------ 662

Query: 353 IADPLGLASDCVRSCIIAS----------NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                      VR   +A               L+ AD + IE RVLA +  E    +AF
Sbjct: 663 ------SLGKEVRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAF 716

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458
           +   DI+  T ++ F  PI+ V    R +GK +   + Y       A+          L 
Sbjct: 717 SRDIDIHALTASRLFGVPIESVDDNMRRMGKTINFGIIYGMSGFRLARDTGLEQREANLF 776

Query: 459 LQQFSQNVKSTSTFEDWEQAESH-------HLWMQDQYPEF--------------AVKDK 497
           ++++         + +    E+         L  +   P+               A+   
Sbjct: 777 VKRYMDQFPRVKAYFEQLIKEAEKKGYVETPLGRRRYLPDITSSNPQRREAARRAAINMP 836

Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKD---------LTEGFACVVQEGGSI 538
           + G A +++K+A    H            +LQ+  +         L      +V+E  + 
Sbjct: 837 IQGMAADIIKQAMIDVHSALEREGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTA 896

Query: 539 S 539
            
Sbjct: 897 F 897



 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q ++ DI+ + M +             ++L VHDE++ E  ++        +   M+  
Sbjct: 837 IQGMAADIIKQAMIDVHSALEREGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTA 896


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 102/569 (17%), Positives = 188/569 (33%), Gaps = 108/569 (18%)

Query: 5   FIDIETRS----PQPLPKVGV-WAYAEQAVITLCAYAWDDEP-----VKLWDRTEQSAMP 54
            ID ET S       L  + + +   E   I    +    +P     +KL D        
Sbjct: 358 AIDTETNSLDTMVANLVGISLSYRPGEAFYI-PIGHQNKSDPSIKKQLKLKDVL------ 410

Query: 55  SDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           S +  YL D TV  V  N  ++ RI  K   GI + S         +   G      +  
Sbjct: 411 SVIKPYLEDPTVKKVGQNIKYDYRIFLKH--GIQMNSIEDTMLMSYSLDAGKNRHGMDLL 468

Query: 114 LALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             L+ +      ++    GK+ +  F    I                +   +Y   D + 
Sbjct: 469 SELHLNHKTISFKDVAGIGKSQVT-FDFVDI----------------EQAKDYACEDADI 511

Query: 170 TRELFKR----------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L+K           L    + E+ L  +  ++ + G +ID +++ KL +    E + 
Sbjct: 512 TLRLYKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQN 571

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278
           L++ I K+      +      L   ++    I     ++       + + +  LA     
Sbjct: 572 LEKKIFKIAKEEF-NIGSPKQLGDVIYEKLKIAGSKKTKKG-NFATNVAVLEDLASQGHE 629

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +L  +     KL     +TL   +++  +   T     A+ TGR +      QN+P  
Sbjct: 630 FPKLVLNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIP-- 687

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                    +    +RS  ++    KL+ AD + IE R+LA + 
Sbjct: 688 ----------------------IKNIEGKEIRSAFVSDKNSKLISADYSQIEMRILAHMG 725

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                 KAF N EDI+  T ++ F+  + KV ++ R   K +   + Y     G AK   
Sbjct: 726 DVKELKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIYGISSYGLAKQIS 785

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
              S     L+ +         F +                     +      +  ++  
Sbjct: 786 VSNSEAENFLKSYFGKFPEIRDFMNENITFCRKNGYVKTLFDRKCHFPNINDKNHTLRTF 845

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                +   + GTA +L++ A     + +
Sbjct: 846 QERACINAPIQGTAADLLRLAMIQIDKKI 874



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           +Q  + D+L   M    K          +++ VHDE++ E  +    SV   +   M
Sbjct: 855 IQGTAADLLRLAMIQIDKKISAKEIPASLLIQVHDELLLECKEKDVSSVQQKIAHEM 911


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 163/493 (33%), Gaps = 92/493 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           SDL   L D  +  + H+  + R +  K +G+D     +   ++LA     PS  +    
Sbjct: 363 SDLKAVLADPGITKIIHDGKYARTVLAK-IGMDFV---YNFDTMLAAYLLDPSKPRYDLE 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           ++ F     ++           KG+ D            +      + C     A  ELF
Sbjct: 419 SVVFDNLGVEL-----------KGTEDPGRRVAYLIPLKEIMSEKLKSC-----AMEELF 462

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                    E  L  +   +   G ++D + +  L     ++ ++L  +I +L      +
Sbjct: 463 ------FGVEMPLSFVLSDMEMTGIKVDPEKLESLSREFGEKLEELTGEIYRLAGVEF-N 515

Query: 235 SRQTYALRMYLFLITGIDLVDMSEG---TLKSILS-----HSNITQLAKDLILNRLASSG 286
                 L   LF    + ++   +    T   +L      H  + ++ +   L ++ S+ 
Sbjct: 516 INSPKQLGEVLFEKLNLPVIKKKKSGYSTDAEVLEKLKNAHPVVEKILEYRFLMKMKSTY 575

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           +     + L   V     R+         + TGR S      QN+P              
Sbjct: 576 A-----DGLLALVDKSTYRIHSNFN-QTITATGRISSTEPNLQNIP-------------- 615

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +A      L+  D + IE RVLA ++G++  I+AF  
Sbjct: 616 ----------VKTDIGRKIRGVFVAESPEHVLLSGDYSQIELRVLAHLSGDEGLIEAFIK 665

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           GEDI+  T ++ F  P ++V+   R   K +   + Y     G A+      +     ++
Sbjct: 666 GEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIYGISDYGLAQNLGISTAEAREYIE 725

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            +         +                         +  S +  ++      A+   + 
Sbjct: 726 NYLNRYPKVRDYIRETIRNARMSGYVTTILNRRRYIPEINSRNYNLRSFAERVAMNTPIQ 785

Query: 500 GTACELVKKAWRA 512
           G+A +++K A   
Sbjct: 786 GSAADIIKVAMVK 798


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 88/527 (16%), Positives = 177/527 (33%), Gaps = 80/527 (15%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           +AE A I     ++  E +         +M  +LL+ L    V   A           + 
Sbjct: 344 FAENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALV--HVAKHA----------GRF 390

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           +  D+ S        L    GL  + +  C     + +L    +         +  +   
Sbjct: 391 VVFDLKSS-------LPYLKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLM 443

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRID 202
               T    +  ++ +  +   +V   +   + +  L ++ E  L      +   G R++
Sbjct: 444 IDPKTELEKMVCYEAYAAFASSEVLEEKLKKEEMWKLFTEIEMPLVFTLFHMEQNGVRVE 503

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +    E +  +  +L+++I +L      +      L + LF    +     ++    
Sbjct: 504 AEELKSYGEQLGGKIVQLEKEIYELAGEEF-NINSPKQLGVVLFEHLSLPNGKKTKTG-- 560

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASR 316
              +   + +LA D  +         + KL     + L+  +  D  R+ G       + 
Sbjct: 561 YSTAADVLDKLAPDYPIVAKILEYRQLAKLKSTYADGLAVFIHEDDHRIHGKFN-QTVTA 619

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                              +R   +   G   
Sbjct: 620 TGRISSTEPNLQNIPAR------------------------VELGRLIRKVFVPEEGYVF 655

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE RVLA  +G+   I+A+   +DI+  T ++ F+TP D+V+  QR   K + 
Sbjct: 656 VDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTDLQRRNAKAVN 715

Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------- 483
             + Y     G ++            + ++ +       F D   A +            
Sbjct: 716 FGIVYGISSFGLSQDLSITRKEAAEYIDRYFETYPGIKKFLDDAVAHAKEQGYVVTLFGR 775

Query: 484 -----------WMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                      +MQ Q+    A+   + GTA +++K A  A  + + 
Sbjct: 776 RRPVPELSSSNFMQRQFGERVAMNSPIQGTAADIMKIAMIAVDKELR 822


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 93/530 (17%), Positives = 168/530 (31%), Gaps = 85/530 (16%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E     + L   L  + V+ V  N  ++  +  +  GI +       T +++       S
Sbjct: 413 ETEVALAKLKPLLESDAVVKVGQNIKYDLNVLARH-GIAVAP--IEDTMIVSFALDAGRS 469

Query: 109 LKNACLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                      E     +          C     + P+     +         EY   D 
Sbjct: 470 QDGIGGGHGMDELAQRHLGHTCLTFKEICGTGKKAIPFGEVPID------RATEYAAEDA 523

Query: 168 EATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T  L+  L P    E          R L  +   +   G ++D   +  L E  A+E 
Sbjct: 524 DVTSRLYTHLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIKVDRQQLAALSERFARET 583

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNIT-- 271
            +L+ +I ++             L   LF   G             T +S+L   + T  
Sbjct: 584 ARLEGEIHEIAGQEFT-VGSPKQLGDILFDKMGYKGGKKGKSGQYSTDQSVLEKLDATGA 642

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            +A  ++  R   +       + L +A++    R+  +    GA +TGR S      QN+
Sbjct: 643 PIATKVLEWRQ-LAKLKSTYTDALQQAINPKTNRVHTSYSLVGA-QTGRLSSTDPNLQNI 700

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                              +R   +A  G  L+ AD + IE R+ A
Sbjct: 701 PIRT------------------------EIGREIRQAFVADEGNVLLAADYSQIELRLAA 736

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            +A      +AFA GEDI+  T  + F      V ++ RA  K +  A+ Y     G A 
Sbjct: 737 HMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGISRWGLAG 792

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485
                A      +  +         +                       + +  S +   
Sbjct: 793 RLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGYSQTLFGRKTWFPRINSKNQAE 852

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ--LWKDLTEGFACVVQ 533
           +      AV   + GT+ +++K+A       + +  L  D  +G   ++Q
Sbjct: 853 RQGSERAAVNAPIQGTSADIIKRAMARMGPALAEAGLKPDAPDGVRMLLQ 902


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 84/546 (15%), Positives = 171/546 (31%), Gaps = 92/546 (16%)

Query: 55  SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSL 109
           S+ L  LR    D ++  + HN  F+  +         P       ++LA     P    
Sbjct: 399 SEALDALRPLFADNSITKIGHNLKFDLAILAAQ---SCPVDGPCYDTMLAHALIEPEQRH 455

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               LA ++  +           +     +    P D +  +     Q   +Y   D + 
Sbjct: 456 NLDTLAEDYLRY------STIRFSELMPDAKKGSPLDYSSVDP----QALADYATEDADV 505

Query: 170 TRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T +L++   P  +           E  L  +   +   G R+  + + +   ++  +   
Sbjct: 506 TLQLWECFKPKLEESGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVLEGQIAT 565

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-- 277
           L + +         +      L   LF    +        T +   +   ++ LA     
Sbjct: 566 LKDAVYAAAGREF-NLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSLAPKHPI 624

Query: 278 ---ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              +L     S      ++ L  AV    GR+         + TGR S      QN+P +
Sbjct: 625 VADLLEYRQLSKLKSTYIDALPNAVDPVSGRVHTHYG-QVQTATGRLSSNDPNLQNIPVR 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +   G  L+ AD + IE R+LA + 
Sbjct: 684 S------------------------AQGREIRKAFVPREGWTLLAADYSQIELRILAALT 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-----KVF 448
            ++  + AF  G DI+  T AK F    D VS++QR+  K++   + Y   A     ++ 
Sbjct: 720 ADEGLLTAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYGISAFGLAQRLG 779

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487
               +     +  +         +   +Q  +                      +  ++ 
Sbjct: 780 TVSRTEAQNIIDNYFAQFPGIPGYMQAQQESARAKGYVATVCGRRRYLRDINSGNGTIRA 839

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISAR 541
                A+   + GTA +++K A    H  ++      ++   + +     +  G   + R
Sbjct: 840 AAERNAINMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPGEESALR 899

Query: 542 RVANVP 547
           ++    
Sbjct: 900 QLVTGG 905



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGK 596
             A+ + +            +     S+R   Y   V G   YL    S     R    +
Sbjct: 784 TEAQNIIDNYFAQFPGIPGYMQAQQESARAKGYVATVCGRRRYLRDINSGNGTIRAAAER 843

Query: 597 LTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC 648
              N+ +Q  + D++   M        D      ++L VHDE++ +       ++  L 
Sbjct: 844 NAINMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPGEESALRQLV 902


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 133/369 (36%), Gaps = 58/369 (15%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           ++ E  L      + + G     + + +  + +A    +L++ I +       +      
Sbjct: 527 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQ 585

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           L + LF    +     ++       +   + +LA +  +         + KL     + L
Sbjct: 586 LGVILFEKLSMPYGKKTKTG--YSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGL 643

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              ++ DGR+  +      + TGR S      QN+P +                      
Sbjct: 644 VNYIAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPMR---------------------- 680

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +   G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++
Sbjct: 681 --IELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQ 738

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P D+V+  QR   K +   + Y     G ++            ++++ +      T
Sbjct: 739 VFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKT 798

Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510
           F D   AE+                       +MQ  +    A+   + GTA +++K A 
Sbjct: 799 FLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 858

Query: 511 RAKHQGVLQ 519
              H  +L+
Sbjct: 859 IRVHDRLLK 867



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M               ++LTVHDE++ ET      
Sbjct: 833 QRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEED 892

Query: 643 SVGTLCS 649
           +V  +  
Sbjct: 893 AVRKILE 899


>gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P+  +   + LA+                         + +     + KG
Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          +  ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF   G+ L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA+++DG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             ++ + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTENNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V      + R++  
Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 110/616 (17%), Positives = 215/616 (34%), Gaps = 103/616 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           L +YL D TV  V HN+ F+  +L +  + +   +   +    +   N    +LKN    
Sbjct: 191 LKRYLTDPTVGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMKILNENEPSVALKNLAT- 249

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYD-----CTRANHVQAWQLFGEYCKRDVEAT 170
             + +      E       F K      P D       +  H+  W+L+  +    +   
Sbjct: 250 -RYGKFFGFDGESHTFEDLFGKACFADVPLDMALIYAAKDTHL-TWELYK-WQMEHLTKR 306

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +L K    L   E  L  +   +   G+ +D     +  E +  E  ++++ +V     
Sbjct: 307 EDLLKLYREL---ENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKTLVAHFGE 363

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNITQLAKDLILNRLASSG 286
           I  +      L   L+   G+         +K++      H  I  L K   L +L  + 
Sbjct: 364 I--NFNSPAQLAEVLYDRLGLPQGKERSTDVKTLKGLKGRHPGIEPLLKYRELTKLLGTY 421

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                +  L   + +DGR+ G+     A+ TGR++      QNLP               
Sbjct: 422 -----VEALPHQLKADGRIHGSFN-QVATVTGRFASREPNLQNLP--------------- 460

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             R  I+A  G  L+  D + IE R+LA ++G+    + +  GE
Sbjct: 461 ---------------PRARRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKGE 505

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           D+Y T  A+ F  P+ +     + R + K+  LA+ Y        T++   G+ +++  +
Sbjct: 506 DLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTS---MFTLSEQLGISVEEAHR 562

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
            ++       +++    + +++D + EF  K++ + T     ++    + Q ++      
Sbjct: 563 FIEGF-----YDEYPDVYAFIKDTW-EFVKKNEYVATLYGRKRRFPGHREQAIVY----- 611

Query: 525 TEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                    +  +    +     R  +     + +               K         
Sbjct: 612 ---------DQLAAKICKALGTERVPLDFWSNKGI--------------PKDLKRKFGAV 648

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDT 639
             ++ R R          +Q  + DI+   + N        G+ I  TVHDE +    DT
Sbjct: 649 KGEVERVRRMA---VNARIQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLLVRDT 705

Query: 640 PYF-SVGTLCSLMTKN 654
                V  L + M + 
Sbjct: 706 ITLAEVEELEACMVRA 721


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 76/411 (18%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF +    D +   ++++      D E  L  +   +   G  ID  L+ +    +  +
Sbjct: 529 RLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKMEQNGVLIDTKLLDQQTAQLNTK 581

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKS--ILSHSNITQL 273
            ++L+E   ++     + S     L   LF   G+ L     + T+      S   +++L
Sbjct: 582 ARELEEQAFEVAGENFKLS-SPKQLGEILFDKMGVVLEGAKPKKTISGNYSTSEEVLSEL 640

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
           A++  L ++A     I KL       L + V   DGR+  T +    + TGR S      
Sbjct: 641 AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGRLSSTNPNL 699

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              VR   I+++G KL+ AD + IE R
Sbjct: 700 QNIPIRT------------------------EEGRKVREAFISASGCKLISADYSQIELR 735

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444
           ++A ++ +   ++AF N EDI+  T A+ F    DKV+   R I KV+   L Y      
Sbjct: 736 IMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFG 795

Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQY--- 489
            AK            + +F         + +  +A +             LW+ + +   
Sbjct: 796 LAKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHAGG 855

Query: 490 ------PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
                    A+   + GTA +L+K +  A          K + +LQ+  +L
Sbjct: 856 ARRAAAERAAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDEL 906



 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + D++   M        + G    ++L +HDE++ E P+     V   L  +M
Sbjct: 871 QGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 926


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 129/377 (34%), Gaps = 57/377 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L    + E+ L  +   +   G R D+  +  L   +A+E ++L+E++ +L      +
Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L   LF    +  +  ++ T K   S + +  L +   +         + KL  
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L   V    GRL        A+ TGR S      QN+P +               
Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI
Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           +  T +  F  P + V    R   K +   + Y   A    +            ++++ Q
Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
           +      + +    E                          +++     A    + GTA 
Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760

Query: 504 ELVKKAWRAKHQGVLQL 520
           +L+K A       + ++
Sbjct: 761 DLMKLAMVKLFPRLREM 777



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555
           + G   E V    R   +  +            + QE        VA + R      + +
Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706

Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +   L   R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   
Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766

Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           M        + G  ++L VHDE++ E P      V  L  
Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 133/369 (36%), Gaps = 58/369 (15%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           ++ E  L      + + G     + + +  + +A    +L++ I +       +      
Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQ 589

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           L + LF    +     ++       +   + +LA +  +         + KL     + L
Sbjct: 590 LGVILFEKLSMPYGKKTKTG--YSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGL 647

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              ++ DGR+  +      + TGR S      QN+P +                      
Sbjct: 648 VNYIAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPMR---------------------- 684

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +   G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++
Sbjct: 685 --IELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQ 742

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P D+V+  QR   K +   + Y     G ++            ++++ +      T
Sbjct: 743 VFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKT 802

Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510
           F D   AE+                       +MQ  +    A+   + GTA +++K A 
Sbjct: 803 FLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 862

Query: 511 RAKHQGVLQ 519
              H  +L+
Sbjct: 863 IRVHDRLLK 871



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M               ++LTVHDE++ ET      
Sbjct: 837 QRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEED 896

Query: 643 SVGTLCS 649
           +V  +  
Sbjct: 897 AVRKILE 903


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 129/377 (34%), Gaps = 57/377 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L    + E+ L  +   +   G R D+  +  L   +A+E ++L+E++ +L      +
Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L   LF    +  +  ++ T K   S + +  L +   +         + KL  
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L   V    GRL        A+ TGR S      QN+P +               
Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI
Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           +  T +  F  P + V    R   K +   + Y   A    +            ++++ Q
Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
           +      + +    E                          +++     A    + GTA 
Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760

Query: 504 ELVKKAWRAKHQGVLQL 520
           +L+K A       + ++
Sbjct: 761 DLMKLAMVKLFPRLREM 777



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555
           + G   E V    R   +  +            + QE        VA + R      + +
Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706

Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +   L   R+  Y +   G   Y+    +++   R    ++  N+ VQ  + D++   
Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766

Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           M        + G  ++L VHDE++ E P      V  L  
Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 133/369 (36%), Gaps = 58/369 (15%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           ++ E  L      + + G     + + +  + +A    +L++ I +       +      
Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQ 589

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           L + LF    +     ++       +   + +LA +  +         + KL     + L
Sbjct: 590 LGVILFEKLSMPYGKKTKTG--YSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGL 647

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              ++ DGR+  +      + TGR S      QN+P +                      
Sbjct: 648 VNYIAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPMR---------------------- 684

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +   G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++
Sbjct: 685 --IELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQ 742

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P D+V+  QR   K +   + Y     G ++            ++++ +      T
Sbjct: 743 VFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKT 802

Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510
           F D   AE+                       +MQ  +    A+   + GTA +++K A 
Sbjct: 803 FLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 862

Query: 511 RAKHQGVLQ 519
              H  +L+
Sbjct: 863 IRVHDRLLK 871



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M               ++LTVHDE++ ET      
Sbjct: 837 QRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEED 896

Query: 643 SVGTLCS 649
           +V  +  
Sbjct: 897 AVRKILE 903


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/519 (15%), Positives = 174/519 (33%), Gaps = 62/519 (11%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I   A A +      + RT+ +        +L DET      +     +  K   GI++ 
Sbjct: 334 ILGFALANEHG--HFFIRTDTALSSPLFTAWLEDETKKKSVFDGKRAIVALK-WKGIELR 390

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                   ++A     PS  ++     + ++    M           KG+  + P +   
Sbjct: 391 --GIEFDLLIASYLLNPS--QSTEDVASVAKTKQYMAVQSDEAVY-GKGAKQTVPEEKAL 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A H+          +++     +  ++    +D E  L  +   +   G ++D++ + ++
Sbjct: 446 AEHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVDVERLKEM 505

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
            E + ++ + ++++I +L      +      L + LF    + ++  ++    T   +L 
Sbjct: 506 GEELTEQLRAVEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLE 564

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                    + IL+           +  L + V  D     T+     ++TGR S     
Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGRLSSTEPN 624

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            QN+P +                              +R   + S     +  AD + IE
Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFVPSKPDWVIFSADYSQIE 660

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA IA ++  I AF +  DI+  T    F+   D+V+   R   K +   + Y    
Sbjct: 661 LRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGISD 720

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G ++            ++++ +       + +                          S
Sbjct: 721 YGLSQNLNIPRKEAAEFIRRYFEIFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITS 780

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  ++      A+   + G+A +++KKA       + Q
Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLADRLKQ 819



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLV 550
             +     + V    R +    + G++    D        + ++  +   RR   +   V
Sbjct: 689 MDIFHVTADEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNIPRKEAAEFIRRYFEIFPGV 748

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
            +  +  V               +    YL   TS+    R++  +   N  +Q  + DI
Sbjct: 749 KQYMENIVQEAKQKGYVTTLLHRR---RYLPDITSRNFNLRSFAERTAMNTPIQGSAADI 805

Query: 610 LCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
           + + M +        K    ++L VHDE++ E P      +  +   +M    
Sbjct: 806 IKKAMIDLADRLKQEKLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENAI 858


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 127/372 (34%), Gaps = 63/372 (16%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           REL+  L      E  L  +   +  RG  ID          +  E  +L  ++      
Sbjct: 514 RELYNTL------ELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYAAAGT 567

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASS 285
              + R    L   LF    +     ++G  ++  S   + +LA        IL      
Sbjct: 568 TF-NIRSAQQLGDVLFKTLNLPSPRKTKGG-QASTSQQTLEKLAGRHAVVDSILQFRKLE 625

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 L+ L   V   GR+  T     A+ TGR S      QN+P              
Sbjct: 626 KMRSTYLDPLPRLVDGQGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------- 670

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                       G     +R+C IA  G+ LV AD + +E RVLA ++ +   + AF  G
Sbjct: 671 ----------VRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQG 720

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461
           EDI+  T A  ++    +VS +QR   K +   L Y  GA+      K   +     + +
Sbjct: 721 EDIHARTAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGAQKLGQELKISTAEAKEFITR 780

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500
           + + +     F +  +A +                                 A+   + G
Sbjct: 781 YFERLTGLKAFYENVEATAKRQGYVTTLGGRRRLLPDILSANGQAFALARRQAINTVIQG 840

Query: 501 TACELVKKAWRA 512
           +A +++K A  A
Sbjct: 841 SAADIIKLAMLA 852



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPD-TPYFSVGTLCSL 650
              ++Q  + DI+   M          +    ++L VHDE++ ETP+ T   +   + +L
Sbjct: 834 INTVIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELLLETPEATAEAAGARVAAL 893

Query: 651 MTKNPSWAKG 660
           M+     A G
Sbjct: 894 MSSV---APG 900


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/493 (17%), Positives = 168/493 (34%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +   S  L +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 348 AEMALADSQFLAWLADETKKKSMFDAKRAAVALK-WKGIELR--GVAFDLLLAAYLLNPA 404

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 405 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 461

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++ + +++ I +L
Sbjct: 462 LDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYEL 521

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 522 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 580

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 581 GKLQSTYIEGLLKVVHPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 629

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S    L+  AD + IE RVLA IA +D  I+AF
Sbjct: 630 --------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAF 675

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 676 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 735

Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                          S +  ++      A+   
Sbjct: 736 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTP 795

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 796 IQGSAADIIKKAM 808



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A              KR +  ++  +++  Y         YL   TS+    R++  + 
Sbjct: 731 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERT 790

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
             N  +Q  + DI+ + M +             ++L VHDE++ E P      +  L   
Sbjct: 791 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 850

Query: 650 LMTKNPSWAKGLPLKAE 666
           +M +    A  +PLK +
Sbjct: 851 VMEQAV--ALRVPLKVD 865


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 83/502 (16%), Positives = 176/502 (35%), Gaps = 88/502 (17%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+ +  ++H+     ++ +K    DI +K +I  + +A     PS        +   + 
Sbjct: 385 EDKNIKKISHDIKNVYVVLRKY---DIDAKNFIFDTKIASYLLEPSKSDYILREIILEKL 441

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              +++        CK                + + +   Y K   E      + L    
Sbjct: 442 SINIDDSDEE----CKI--------------KETYCIKEIYEKLQKEIKEANMEELF--Y 481

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +  ++   G+++D D + ++ E    E K L+++I KL      + +    L
Sbjct: 482 NVELPLTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAGEDF-NIKSPKQL 540

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L     +      I++    +      +  L   
Sbjct: 541 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIDYRQITKLDSTYVEGLKHV 600

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++  +      + TGR S      QN+P +                         
Sbjct: 601 IDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKH------------------------ 635

Query: 359 LASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +A+N + ++  AD + IE RVLA IA ++  I AF + +DI+  T ++ F
Sbjct: 636 EMGREIRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVF 695

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P+++V+   R+  K +   + Y  GA    K            +  +     +   + 
Sbjct: 696 RVPVEEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYI 755

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
           D                       + +S +  ++      A+   + G+A +++K A   
Sbjct: 756 DDIINKSEQDGFVTTIMNRKRYIPEIQSRNRIVRSFGERLAMNTPIQGSAADIIKLAMVH 815

Query: 511 --------RAKHQGVLQLWKDL 524
                     K   +LQ+  +L
Sbjct: 816 VYEELIKRNLKSTLILQVHDEL 837


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 83/504 (16%), Positives = 164/504 (32%), Gaps = 81/504 (16%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           WD  ++      L ++L D        +   + +        D   K       LA    
Sbjct: 354 WDVAKE---WKALCEWLADPAKEKWVFDGKRDTVGLA---WHDFAIKGISFDVYLASYL- 406

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQA-----WQ 157
               L  A           +  + + L     + KG+    P     + HV       WQ
Sbjct: 407 ----LNAAESNPTLDSIAAQYAQTRVLSDEEVYGKGAKRLVPEMDVLSEHVAHKAAAIWQ 462

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                 ++  E   E   +L  L + E  L ++   +  +G +++ + ++++ E + ++ 
Sbjct: 463 SVPVLREQLAENEME---KL--LGELEAPLSMVLALMEKQGVKVNSERLVQMGEDLDKKL 517

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L + I +L  G   +      L   LF    + ++  ++       S   + +LA   
Sbjct: 518 AGLTDQIYELAGGAF-NINSPKQLGEILFDRLSLPVLKKTK--TGPSTSADVLEKLAPYH 574

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            +     +   + KL       L++ + +      TL     + TGR S      QN+P 
Sbjct: 575 PIIDAILTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYNQATTATGRLSSTDPNLQNIPI 634

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAW 391
           +                              +R   I S  G  ++ AD + IE R+LA 
Sbjct: 635 R------------------------MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAH 670

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           I+ ++  I AF  G DI+  T    F    ++V+   R   K +   + Y     G ++ 
Sbjct: 671 ISQDENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVNFGIVYGISDYGLSQN 730

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                   G  ++++         + D                          S +  ++
Sbjct: 731 LNITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHVTTLLNRRRYLPDIRSSNFNLR 790

Query: 487 DQYPEFAVKDKLIGTACELVKKAW 510
                 A+   + GTA +++K A 
Sbjct: 791 SFAERTAMNTPIQGTAADVIKLAM 814



 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKN----ATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + D++   M        + G    ++L VHDE+V E PD     +  L   +M
Sbjct: 802 IQGTAADVIKLAMIRMQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRKLVPEVM 858


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 84/493 (17%), Positives = 168/493 (34%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +   S  L +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 348 AEMALADSQFLAWLADETKKKSMFDAKRAAVALK-WKGIELR--GVAFDLLLAAYLLNPA 404

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 405 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPS 461

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++ + +++ I +L
Sbjct: 462 LDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYEL 521

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 522 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 580

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 581 GKLQSTYIEGLLKVVHPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 629

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S    L+  AD + IE RVLA IA +D  I+AF
Sbjct: 630 --------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAF 675

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 676 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGVVYGISDYGLAQNLNITRKEAAEF 735

Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                          S +  ++      A+   
Sbjct: 736 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTP 795

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 796 IQGSAADIIKKAM 808



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A              KR +  ++  +++  Y         YL   TS+    R++  + 
Sbjct: 731 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERT 790

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
             N  +Q  + DI+ + M +             ++L VHDE++ E P      +  L   
Sbjct: 791 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 850

Query: 650 LMTKNPSWAKGLPLKAE 666
           +M +    A  +PLK +
Sbjct: 851 VMEQAV--ALRVPLKVD 865


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 125/697 (17%), Positives = 221/697 (31%), Gaps = 172/697 (24%)

Query: 1   MSKLFIDIETRSPQP----LPKVGVWAYAEQAV---ITLCAYAWDD--EPVK------LW 45
           +  + ID ET S  P    L  +G+  + E+          +  +D  E         L 
Sbjct: 384 IQPVAIDTETTSLNPFQSELVGIGLC-WGERPEQIAYIPLGHITEDLFEDQSSNLQLPLI 442

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVL 99
           D  +       L  +L       V  N+ ++R++F +       + +D     ++C    
Sbjct: 443 DVIKG------LSPWLGSSEHPKVLQNAKYDRLIFLQYGIPLEGVIMDTLLADYLCDVTH 496

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
             +    +  +      NF+E + K E        F   SI +                 
Sbjct: 497 RHSLEAMAKREFGFTPTNFNEIVGKDET-------FKNVSISTA---------------- 533

Query: 160 GEYCKRDVEATRELF-----------KRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVL 207
             YC  DV  TR+L+           ++LI L +  E+ L  +   +  RG RID+  + 
Sbjct: 534 SLYCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLK 593

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           +L   + +  K +++   K+       S     L   LF   G+D               
Sbjct: 594 ELSIELNKALKNIEKSAYKIAKTDFNLS-SPKQLGEVLFEQLGLDKKKSRRTKTGWSTDA 652

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321
           + + +L  D  +  L      + KL       L + V +  GR+         + TGR S
Sbjct: 653 NVLERLQGDNPIVPLVIEHRTLSKLLSTYVEALPQLVEAQTGRVHTDFN-QAVTATGRLS 711

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                           S  +R   +   G +L+ AD 
Sbjct: 712 SSNPNLQNIPIRT------------------------EFSRRIRKAFLPREGWQLLSADY 747

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA ++GE    +A+ NG+D++  T     +   + ++  +R +GK +   + Y
Sbjct: 748 SQIELRILAHLSGEASLQEAYRNGDDVHALTAKILLDK--ESITSNERRLGKTINFGVIY 805

Query: 442 QGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
             G + F        S     L ++ +   +  ++ + +                A+   
Sbjct: 806 GMGVQRFARSTGVSQSEAKDFLNRYKERYTNVFSYLELQ-------------ERLALSKG 852

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
            + T                     D                         L     K  
Sbjct: 853 FVETIL-----------GRRRHFHFDKN----------------------GLGRLLGKNP 879

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           + I L  +RR                 +Q +R            +Q  S DI+   M   
Sbjct: 880 LEIDLKLARRA-------------GMEAQQLRAAANAP------IQGSSADIIKVAMVKL 920

Query: 618 TKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
            K     G    ++L VHDE+V E   T    V  L 
Sbjct: 921 DKELKNEGLPANLLLQVHDELVLEVDPTATEQVKALV 957


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 80/512 (15%), Positives = 167/512 (32%), Gaps = 89/512 (17%)

Query: 73  SLFERILFKKTLGIDIPSKRWIC-TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           ++F+    KK L       +  C    +A     P         +   +    ++E   +
Sbjct: 384 AMFD---LKKYLPHVKAPDQEKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLMIDEKADV 440

Query: 132 IARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           + + C  +          R              K   E    LF      +D E  L   
Sbjct: 441 MTKACYEAYTAFAAVKPLRD-------------KMQAEGMYHLF------TDIEMPLVFT 481

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G +++ + +    E +     +L+++I ++      +      L + LF    
Sbjct: 482 LFDMEQAGIQVEAEALKFYGEQLGGRIVELEKEIYEMAGETF-NINSPKQLGVVLFDHMQ 540

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
           +     ++    T   +L          + IL     +       + L+  + +DGR+ G
Sbjct: 541 LPNGKKTKTGYSTAADVLDKLAPDYPVVEKILEYRQLTKLKSTYADGLAVYIGADGRIHG 600

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                  + TGR S      QN+P                                +R  
Sbjct: 601 KFN-QTITATGRISSTEPNLQNIP------------------------VRMELGRLIRKV 635

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +   G   + AD + IE R+LA  +G++  I+A+ +  DI+  T ++ F+TP ++V++ 
Sbjct: 636 FVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTEL 695

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA----- 478
           QR   K +   + Y     G ++            ++ + +       F D   A     
Sbjct: 696 QRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAQYIENYFETYPGIKRFLDDTVAHAKEE 755

Query: 479 ----------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------ 516
                           +S +   ++     A+   + G+A +++K A    ++       
Sbjct: 756 GYVVTLFGRRRPVPELKSSNFMQRNFGERVAMNAPIQGSAADIMKIAMIGVNRELKEKGL 815

Query: 517 ----VLQLWKDLT-EGFACVVQEGGSISARRV 543
               +LQ+  +L  E     + E   I  R++
Sbjct: 816 RSRMILQVHDELLIEAHREEIGEVQEILKRQM 847


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 89/538 (16%), Positives = 173/538 (32%), Gaps = 89/538 (16%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--QYLRDETVMCVAHNSLFERILFKKT 83
           E+  I     AW +E  +++     S +P   +   YL ++T        L   +  K  
Sbjct: 329 EKGQILGLGLAWGEEETEVY-----SILPQGFVTEDYLIEKTQEFCQQGKLIASLNIKAM 383

Query: 84  LGI-DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF--CKGSI 140
           L   D+ S   +  + LA     P                T  +  K  +      K  +
Sbjct: 384 LRYMDLKSHNDMFDAGLAAYLLNP-----------LKSEYTYDDIAKEFLGEMFPAKEDL 432

Query: 141 DSPPYDCTRANHVQA----------WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                    AN  +           +              +E  K L   +D E  L   
Sbjct: 433 LGKLSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELY--TDMEMPLLFT 490

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ++ + + +  E +    + L+++I +       +      L + LF    
Sbjct: 491 LADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKLE 549

Query: 251 IDLVDMSE---GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
           +     ++    T   +L       +L  D++  R   +       + L+  ++ DGR+ 
Sbjct: 550 LPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAEDGRIH 608

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T      + TGR S      QN+P +                              +R 
Sbjct: 609 STFN-QTITATGRISSTEPNLQNIPVRT------------------------ELGRLLRK 643

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             I  +G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+ 
Sbjct: 644 VFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTP 703

Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
            QR   K +   + Y     G ++            ++ + Q       F D    E+  
Sbjct: 704 LQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKE 763

Query: 483 LWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                          A+   + GTA +++K A    ++ + +
Sbjct: 764 KGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKE 821



 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M    K          +VL VHDE++ ET      
Sbjct: 787 QRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVE 846

Query: 643 SVGTLCSL 650
            V  +   
Sbjct: 847 QVSAILEQ 854


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 100/574 (17%), Positives = 200/574 (34%), Gaps = 101/574 (17%)

Query: 46  DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D T ++ +  ++L YL+    +E  + + HN  +++++  +  GI +     I       
Sbjct: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVL 496

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
            +G  SS   A +A  +  +  K            K    S P D    + VQ      E
Sbjct: 497 DSG-RSSHDIASIAQKWLSYTRK---------EILKSRKSSIPIDKISDSQVQ------E 540

Query: 162 YCKRDVEATRELFKRLIPLSDGERDL---WLLDQ-------TINDRGYRIDLDLVLKLQE 211
           +   +     +L+  L P    E+ L     LD+        +   G +ID DL+ ++  
Sbjct: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            I++    L+E+I  L+      S     L   LF          ++ T +   +  ++ 
Sbjct: 601 EISKNLLSLEENIYDLSGEKFNLS-SPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLE 658

Query: 272 QL-------AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           Q+        K+++  R  S   +    ++L   ++   +   T     ++ TGR +   
Sbjct: 659 QINCGDNPIIKNILEWRQLSKIKST-YADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P +                              +R   I+   KKL+ AD + I
Sbjct: 718 PNLQNIPIKT------------------------DLGQKIRRAFISPPTKKLISADYSQI 753

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA IA      + F N  DI+    A+ F   I+KVS + R   K +  ++ Y   
Sbjct: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813

Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479
               A   +   S     ++++         + +                     +++  
Sbjct: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           S    +++     A+   + G+A ++ ++A  + H+ +        E      +    I 
Sbjct: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--------EDHKLATKMLLQIH 925

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              V  VP   +        I++ S  +     +
Sbjct: 926 DELVFEVPEEEITTAS---QIIVHSMEKACLPKI 956


>gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b]
 gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b]
          Length = 864

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 94/585 (16%), Positives = 186/585 (31%), Gaps = 119/585 (20%)

Query: 2   SKLFIDIE----------TRSPQPLPKVGVWAYAEQAVITL------------------- 32
             LF+D++          T S +P+ K      AE+  I L                   
Sbjct: 267 KTLFMDLQFKSLIGKLADTSSEEPVEK------AERPTIALVDQDLSRAVLMLEQLHDDY 320

Query: 33  -----CAYAWDDEP-VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
                   A   E  V + D T        + +++ DET   +  ++    I  K+   +
Sbjct: 321 FEEDVIGVAIASERGVTIGDVTLLE--DERVKEWIEDETKTTICLDAKQTIIQLKRH-QL 377

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            +     +  +         +SL +      +     +   GK       K   ++  + 
Sbjct: 378 ALRGYEDLLVAGYLLNLSGGTSLSSIAAHFTYPLEEDETVYGKGAK---IKVPEENVFHA 434

Query: 147 CTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                    + LF        E  + EL++ L      E+ L  +   +   G  ++++ 
Sbjct: 435 HLAEKAYAIYTLFERVVSELKENEQTELYEAL------EKPLVSVLAEMEWAGIHVNVET 488

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  ++  + +    L+  I +L      +      L + LF    +  V  ++    T  
Sbjct: 489 LQHMETDLRERLNALEITIHELAGEPF-NINSPKQLGVVLFEKLSLPPVKKTKTGYSTAA 547

Query: 263 SILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            +L      H  I ++     L +L S+      +  L + V  DG++         ++T
Sbjct: 548 DVLEKLAPLHPIIEKIMHYRELGKLQSTY-----VEGLQKVVKDDGKIHTRYT-QTLTQT 601

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKL 376
           GR S      QN+P +                              +R    AS  G  L
Sbjct: 602 GRLSSVNPNLQNIPIR------------------------LEEGRRIRKAFTASEPGWVL 637

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
              D + IE R++A ++ ++  + AF + EDI+ +T A  F    ++V+   R   K + 
Sbjct: 638 YAVDYSQIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVN 697

Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------ 474
             + Y     G ++            +  + +      TF D                  
Sbjct: 698 FGIIYGISDYGLSQNLGITRKEAQTFIDTYFEQFPGVKTFMDAAIERAREHGFVETMLKR 757

Query: 475 ---WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                   S +  ++      A+   + GTA +++KKA       
Sbjct: 758 RRNIPDIHSRNFNLRGFAERTAINTPIQGTAADIIKKAMIDVDHA 802



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P     ++  L    M + 
Sbjct: 784 IQGTAADIIKKAMIDVDHALNASKLQSKLLLQVHDELIFEGPTEEMEALEKLVTEAMEQT 843

Query: 655 PSWAKGLPLKAEG 667
            +    +PL+A+G
Sbjct: 844 VT--LDVPLRADG 854


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 162/505 (32%), Gaps = 80/505 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   L +  +     N  ++ ++ K   GI +    +  T + +             L
Sbjct: 416 ERLKPVLENPDIRKTGQNLKYDLLVLKNY-GISLTPVAF-DTMLASYVLDPEEKHNLDDL 473

Query: 115 ALNFSE------HLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
           A                 EGK         S     Y C  A+  ++  ++F      D 
Sbjct: 474 AARHLSIRTTTFDELTAGEGKKRTHILDVPSAQLSDYGCQDADIALRLQEVFEAKLLED- 532

Query: 168 EATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                  +RL+ L    E  L  +   +  +G  ID   + K  +L+  +   L   I  
Sbjct: 533 -------QRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHA 585

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF   G+     ++    + +    + +LA    +       
Sbjct: 586 AAGTPF-NLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVE--VLEELAPLHPIIGDLLEY 642

Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            ++ KL     + L + ++   GRL  +   +  + TGR S      QN+P +       
Sbjct: 643 RSLQKLKTTYIDALPKMINPGTGRLHTSFNQH-VTATGRLSSSNPNLQNIPVRT------ 695

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                              A   +R   I S     ++ AD + IE R+ A I+G++  I
Sbjct: 696 ------------------TAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLI 737

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF N EDI+  T    F+T  D+++ + R   K +   + Y     G +K      S  
Sbjct: 738 EAFRNREDIHRATAKVIFST--DEITSDMRRKAKEVNFGVLYGIQPYGLSKRLNIPQSEA 795

Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494
              ++ ++                                     S +  +Q      A+
Sbjct: 796 KAIIETYTTKYPGLFHALLEIIEEGKRKGYVTTLLGRRRYIPDLNSRNGNIQKAAGRAAM 855

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519
              + GTA +++K A     + + +
Sbjct: 856 NTPIQGTAADIIKCAMNLCDRQIKK 880


>gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
 gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
          Length = 889

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 90/592 (15%), Positives = 195/592 (32%), Gaps = 89/592 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   +L+   ++T + V ++    ++L  +  G+D+ +  
Sbjct: 349 FAWSCGD---KLYATDKLELLQDPILKEFLEKTPLKV-YDFKKAKVLLNR-FGLDLQAPA 403

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               N       +++       + KG   + P   T   H
Sbjct: 404 F--DSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPERETFLEH 457

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           +             VE    L ++L        L D E+ L L+   +   G ++  + +
Sbjct: 458 L------VRKVAVLVETEPVLLEKLSENGQLDLLYDMEQPLALVLAKMEIAGIKVKKETL 511

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       +KL ++I +L      +      L   LF   G+ +    +       +
Sbjct: 512 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPIEYTKKTKTGYSTA 570

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + + +DG++         ++TGR S
Sbjct: 571 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 629

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 630 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 665

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 666 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 725

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +             +  + +       + D                     
Sbjct: 726 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 785

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                S +  ++      A+   + G+A +++K A     + ++              + 
Sbjct: 786 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGRYQ--------TKM 837

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    V  VP+  +   K+ V   +  + +L    +  +   +    ++
Sbjct: 838 LLQVHDEIVLEVPKSELASIKKLVKQTMEEAIQLSVPLIADENEGVTWYEAK 889


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 178/511 (34%), Gaps = 86/511 (16%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS 107
           E + +   L  +   E +    +N   +        GI I    + +  +      G   
Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISYDLALAEHLTNGGGKI 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK--- 164
           S ++  +   F+E             RF K   +            + +  FGE      
Sbjct: 407 SFQSLLVNHGFTETAH----------RFAKEWGNLGLPIGRLPEQPEQY--FGELVAYLP 454

Query: 165 --RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             +D    E  R+    +  LSD E  L  +  ++   G  +D++ +  L+ L   E   
Sbjct: 455 IIKDAILEEINRKNLNHI--LSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAV 512

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-----HSNITQLA 274
           L E+I  L+     + +    L   L+   G+  +D ++ T   +L      H  I +L 
Sbjct: 513 LTEEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLL 571

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
               + +L S+      +  L + V S   R+  +    G + TGR +      QN+P +
Sbjct: 572 AFRTIEKLLSTY-----VKALPKQVDSHTQRIHPSFDQTG-TVTGRLACRDPNLQNIPIR 625

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392
                                         +R    ++      + AD + IE R LA +
Sbjct: 626 SER------------------------GILLRKAFRLSEKNSYFLSADYSQIELRFLAHL 661

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           + +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +   + Y     G AKV 
Sbjct: 662 SQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVL 721

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------------HHLWMQDQ 488
           K         +Q +       + F +    ++                         +  
Sbjct: 722 KISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEFPGSRAA 781

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              FAV  ++ G+A EL+K A     Q + Q
Sbjct: 782 SGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 168/512 (32%), Gaps = 79/512 (15%)

Query: 48  TEQS-AMPSD-LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           T     +P D ++  LR    D     VAHN+ F+  + ++  G+ +    +  T + A 
Sbjct: 424 TTGEMQLPRDRVIAALRSFFADPARPKVAHNAKFDIEVLERA-GMPVAGLSF-DTMLAAG 481

Query: 102 TNGLPSSLKNAC-----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                 +LK+       LA         + +GK  +         +  Y    A+     
Sbjct: 482 LLDKRRNLKDLAFYELELAEPLDAIGDLIGKGKNQVTFAEVPIARATRYAAADADMTLRL 541

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q   E   R   +  ++F RL      E  L  +   +   G  +D+  +  L E + +E
Sbjct: 542 QPALEAKLRAAGSLADMFYRL------EMPLVPVLVRMEQSGILLDVPYMRALGERMGRE 595

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDMSEG-TLKSILSHSNITQLA 274
             ++++ I  +      +      L   LF     +    +    T +  L+   + +L 
Sbjct: 596 LAQIEQQIFAIAGKPF-NINSGDQLSEVLFGPKINLPTTGLERTRTGRYSLTAQALEELQ 654

Query: 275 K-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                   +LIL     S      ++ L   V+   GR+       GA+ TGR S     
Sbjct: 655 ASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPN 713

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                              VR   IA+ G  L+ AD + IE 
Sbjct: 714 LQNIPTRT------------------------EEGREVRRGFIAAPGHVLIAADYSQIEL 749

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           RVLA I G+   I+ F  G DI+  T A+ F    + V K QR I K +   + Y     
Sbjct: 750 RVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIYGISPF 809

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------ 484
           G A+            +            + D       +                    
Sbjct: 810 GLAQRLGISREQARNLIDSLFNQFPRIRDYIDRTLETGRNEGYVQSLFGRRRPMFDLRTS 869

Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
              +      A+   +  TA +++K A  A  
Sbjct: 870 GPRRQAAEREAINHPIQSTAADIMKLAMIAVD 901


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 132/382 (34%), Gaps = 65/382 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G+++D +++  + + + +E +K+ ++I +L D    +      L
Sbjct: 483 EVELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELADEEF-NVNSPKQL 541

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL---NRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    +      + +    +I         +      +  L   
Sbjct: 542 GKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKIGYYRQLTKLYSTYVEGLKNV 601

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DGR+  +      + TGR S      QN+P +                         
Sbjct: 602 IDEDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------ 636

Query: 359 LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                VR   + +     ++ AD + IE RVLA IA ++  I AF +  DI+  T ++ F
Sbjct: 637 EMGREVRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKTASEVF 696

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             PID+V+   R   K +   + Y  G    AK  K         +  + +   +   + 
Sbjct: 697 KVPIDEVTVNMRGNAKAVNFGIVYGIGDFSLAKDLKISRKEAKGYIDTYFERYPNVKKYM 756

Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512
           D    ++                                 A+   + G+A +++K A   
Sbjct: 757 DETIDKAKRDMYVTTILNRRRFIPEIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVK 816

Query: 513 ----------KHQGVLQLWKDL 524
                     K + +LQ+  +L
Sbjct: 817 VFNVLKERDLKSKIILQVHDEL 838



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 81/272 (29%), Gaps = 30/272 (11%)

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG---YQGGAKVFKTMA 452
           +           I+ +     FN     V+   R       L      Y+ G +V K   
Sbjct: 596 EGLKNVIDEDGRIHSS-----FN---QTVTTTGRLSSTEPNLQNIPIKYEMGREVRKVFV 647

Query: 453 SHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            +    +   +         +   +  E+   A  HH  +  +      K  +      +
Sbjct: 648 PNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNM 707

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPS 564
              A +A + G++    D +      +       A+   +         K+ +   +  +
Sbjct: 708 RGNA-KAVNFGIVYGIGDFSLAKDLKISRK---EAKGYIDTYFERYPNVKKYMDETIDKA 763

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------ 617
            R +  + +     ++    ++    +  G +L  N  +Q  + DI+   M         
Sbjct: 764 KRDMYVTTILNRRRFIPEIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVKVFNVLKE 823

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                 I+L VHDE++          + ++  
Sbjct: 824 RDLKSKIILQVHDELILNVYKDELEEIKSIVK 855


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/515 (17%), Positives = 168/515 (32%), Gaps = 67/515 (13%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I   A  +D     + D  +    P +L+ +L ++    + +++    I+  +   +DI
Sbjct: 332 DILKFAL-YDGSNHVVIDADKVHDYP-ELIAWLENDKTEKIVYDAKKSYIVAHR---LDI 386

Query: 89  PSKRWICTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
             K  +   +LA     PS        +   F +H  K       I  F KG     P D
Sbjct: 387 AIKHIVFDVMLASYIIDPSRTIDDVNSVVSYFDQHYVK-----ESIEVFGKGKKRHVPED 441

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               +HV          K  +EA  E + +   L D E  L  +   + + G       +
Sbjct: 442 EILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIYTVATDL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++++ I  +   L  +I         +      L + LF    + ++  ++    T   
Sbjct: 502 QEMEKEIQAKLDVLINNIYNAAGESF-NINSPKQLGVVLFETLELPVIKKTKTGYSTAVD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          D IL     S      +  L + +S D R+        A +TGR S  
Sbjct: 561 VLEQLQGQHPIIDYILEYRTLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-QTGRLSSV 619

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLA 382
               QN+P +                              +R    +S+    +  AD +
Sbjct: 620 DPNLQNIPIR------------------------LEEGRRIRKAFKSSDDNNVIFSADYS 655

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I  ++   +AF N EDI+  T  K FN   D+V    R   K +   + Y 
Sbjct: 656 QIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKAVNFGIVYG 715

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477
               G ++            +  +  +      + +                        
Sbjct: 716 ISDYGLSQSLGITRKQAKQFIDDYLDSFPGVKQYMEDIVKDCKAQGYVETLLHRRRYIPD 775

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
             S +  ++      A+   + G+A +++K A   
Sbjct: 776 ITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVN 810



 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M N       T     ++L VHDE++ E P     +    +  +M   
Sbjct: 796 IQGSAADIIKLAMVNFVNEVKHTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDNA 855

Query: 655 PSWAKGLPLKAE 666
              A  +PLK E
Sbjct: 856 L--ALDVPLKVE 865


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/608 (15%), Positives = 197/608 (32%), Gaps = 101/608 (16%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
              PL   G   +AE+        A                    L     D+ V+ V H
Sbjct: 386 CYIPLGHGGTDMFAEKPEQIAMGDAL-----------------ERLGALFADDAVLKVGH 428

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE---- 127
           N  ++  +  +  G+ +           A   G      +    L+        ++    
Sbjct: 429 NLKYDIGVLAQH-GVTVAPYDDTLLMSFALDAGKHQHGLDELAKLHLDHVCLSFKDVCGT 487

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
           GK+ I  F +  +D           V          +  +E    +++        +R L
Sbjct: 488 GKSQI-SFAEVQLDRATEYAAEDAEVAWRLWKLLKLRLPLEGGTRVYEM------VDRPL 540

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             + + +   G  +D D + KL    A E  +++ +I  L      +      L   LF 
Sbjct: 541 AAVVEGMERAGIMVDRDYLAKLSGEFANEMLRIEGEIHALAGQPF-AIGSPRQLGEILFD 599

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS 301
             G+      +         + + +L +D + + R       + KL     + L E V++
Sbjct: 600 KMGLKGGRKGKSG-DWSTDQNELERLERDGVPIARKILEWRQLAKLKSTYTDALQEQVNA 658

Query: 302 D-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
             GR+  +    GA +TGR S      QN+P +                           
Sbjct: 659 TTGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIRT------------------------EV 693

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   IA+ G  L+ AD + IE R+ A +A      +AFA G+DI+  T  + F   
Sbjct: 694 GRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHAATAIELFG-- 751

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474
             +V+++ R   K +  ++ Y     G A   +         + ++ +     S +    
Sbjct: 752 --EVNRDTRGKAKTVNFSILYGISRWGLAGRLEITPDEAQALISRYFERFPGISDYISDT 809

Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA--- 512
                              + + ++ +   +      A+   + GT+ +L+K+A      
Sbjct: 810 LETARARGYTETLFGRKTWFPRIKAANQNERAGSERAAINAPIQGTSADLIKRAMARMPG 869

Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                    +++   + +       E  + +A  V  +  ++M   +  + + +P    +
Sbjct: 870 ALADAGLADVKMLLQVHDELVFEAPEDKAAAAGEV--IRAVMMGAAEPALKLSVPLEVEI 927

Query: 569 VYSDVKGD 576
                 GD
Sbjct: 928 GTGKSWGD 935


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/579 (15%), Positives = 187/579 (32%), Gaps = 104/579 (17%)

Query: 17  PKVGVWAYAEQAVITLCA-------Y-AWDDEPVKLWDR------TEQSAMPSDLLQYLR 62
            +  ++ Y E   I L +       Y ++ DE V   D       T++  +     +   
Sbjct: 322 KENKLYLYFELEDIVLFSKSRIKILYVSFKDE-VYRIDFETLLKNTKEEFI-EVCKEIFE 379

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
            + +  + ++S   R + +K   + +          LA     P   +    +L      
Sbjct: 380 SKEIKKITYDSKNPRTVLRK---LGMEFNGINFDINLAAYLIDPVRKEYEISSL------ 430

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 + L     +   D         N +       E   +D +    L+K       
Sbjct: 431 ----ASEYLFKNINREDEDL---KIKEVNIMPKLYKVLEEKIKDQDIEELLYK------- 476

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E+ L      +   G+++D +++L+L++    E +    +I  +++    +      L 
Sbjct: 477 IEQPLTETLSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMSEEEF-NINSPKQLG 535

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + ++  ++    T   +L          D I      +      +  L  A+
Sbjct: 536 KILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAAI 595

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DG++         + TGR S      QN+P +                          
Sbjct: 596 DEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY------------------------E 630

Query: 360 ASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   I  +    ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F 
Sbjct: 631 MGREIRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASEVFK 690

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            PID+V+   R+  K +   + Y  G    ++            +  + +   +   + +
Sbjct: 691 VPIDEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKIYLE 750

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                 ++ +S +  ++      A+   + G+A +++K A    
Sbjct: 751 NIVEEAIQKGYVTTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNV 810

Query: 514 HQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
           H+           +LQ+  +L         E      +R
Sbjct: 811 HRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKR 849


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/583 (14%), Positives = 183/583 (31%), Gaps = 105/583 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCK 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +++   R + +K   + I          LA     P   +    +L  
Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                 +         F K    +             +++  E  K      +++ + L 
Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            +   E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R   K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAIEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
               H+           +LQ+  +L         E      ++
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains,
           putative [Streptococcus sanguinis SK36]
          Length = 880

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF  
Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELVTIARLYGQTILPTDDEVYGKGAKRALPEQEQLFKH 448

Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             +           ++       +L  L + E+ L  +   +   G +++ + +  +Q  
Sbjct: 449 LARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             +  + L ++I  L      +      L   LF   G+ L    +       +   + +
Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    +         I KL +     L EA+++DG++         ++TGR S      
Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386
           QN+P                                +R   +       L+ +D + IE 
Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442
           RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y    
Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480
            G A             +Q + +       + +                          S
Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            +  +++     A+   + G+A +++K A     + +       ++   + +     V  
Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842

Query: 535 GGSISARRVAN 545
               + R++  
Sbjct: 843 DELTAVRKLVK 853



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMETA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 129/370 (34%), Gaps = 56/370 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           +   E  L  +   +   G  ++   + +  E +A   + +++ I ++      +     
Sbjct: 476 MKTVELPLVEVLAAMEQNGVYVNRAHLAEKTEEVADRLQTIEQSIYEMAGHTF-NLNSPK 534

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + +   ++    T   +L    +     + IL     S      L+ ++
Sbjct: 535 QLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHPIVEQILAYRLWSKLKSTYLDGIT 594

Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             + +D GR+  +      + TGR S      QN+P +                      
Sbjct: 595 GLIRTDTGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT--------------------- 632

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R+      G   L+ AD + IE R+LA ++G++  I  F  G+DI+  T A
Sbjct: 633 ---EEGRMIRALFEPGEGYDYLLSADYSQIELRLLAHMSGDENFIDVFKRGQDIHARTAA 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  P+++V+ E R   K +   + Y     G A+         G  + ++ +      
Sbjct: 690 EVFGIPLEEVTPELRRHAKAVNFGIVYGISDFGLARNLHISRKEAGDYISRYFERYPGVR 749

Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509
            F D   AE+H                                A+   + GTA +++K A
Sbjct: 750 AFMDKVVAEAHETGYVTTMFGRRRELPAIKSRNFNQRMLAERMAMNTPIQGTAADVIKLA 809

Query: 510 WRAKHQGVLQ 519
             A +  + +
Sbjct: 810 MIAAYHRLKE 819



 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + D++   M        + G    I+L VHDE+V E  ++    V  +
Sbjct: 798 IQGTAADVIKLAMIAAYHRLKEAGVKSRILLQVHDELVLEVVESELDVVQAI 849


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 130/406 (32%), Gaps = 70/406 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G +++  ++ ++   +  + ++L  DI  L      +   T   
Sbjct: 536 DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLAGESF-NINSTQQF 594

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT------L 295
              LF   G+ ++  ++           + +LA    +         ++KL +      L
Sbjct: 595 GKILFEKLGLPVIKRTK--TGYSTDVEVLEELADRHPIVPKVLEYRQLMKLKSTYVEGLL 652

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
                 DGR+  +      + TGR S      QN+P                        
Sbjct: 653 PLIDGEDGRIHTSFN-QAVTATGRLSSTEPNLQNIP------------------------ 687

Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R    A  +   L+ AD + IE R+LA ++G+     AFA  +DI+  T +
Sbjct: 688 VRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRTAS 747

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  P++ V+ E R   K +   + Y     G ++    + +     +  +        
Sbjct: 748 EVFGVPMENVTSEMRRRAKAVNFGIVYGISDFGLSRDLGVLRAEARQYIDGYFDRYSGVK 807

Query: 471 TFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKA 509
            + D   AE+                                 A+   + GTA +++K A
Sbjct: 808 GYIDEIIAEARRQGYVTTLLGRRRRLPDLFVKNKIRQNFGERAAMNTPIQGTAADIIKAA 867

Query: 510 WRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                        K + +LQ+  +L            +   R    
Sbjct: 868 MVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAALIRETME 913



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 16/217 (7%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           +  +A+       +   ++    +F+D   A++  +  +     F V  + + +    ++
Sbjct: 707 WTLLAADYSQIELRILAHLSGDPSFKD-AFAKNQDIHTRTASEVFGVPMENVTSE---MR 762

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSR 566
           +  +A + G++    D        V       AR+  +         K  +  I+  + R
Sbjct: 763 RRAKAVNFGIVYGISDFGLSRDLGVL---RAEARQYIDGYFDRYSGVKGYIDEIIAEARR 819

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA----TKNG 621
           +   + + G    L     +    + +G +   N  +Q  + DI+   M          G
Sbjct: 820 QGYVTTLLGRRRRLPDLFVKNKIRQNFGERAAMNTPIQGTAADIIKAAMVRIPGLLAAKG 879

Query: 622 YDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
               +   VHDE++ E P         L    M +  
Sbjct: 880 LKTRMLLQVHDELIFEAPKEELSEAAALIRETMEQTI 916


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/560 (16%), Positives = 180/560 (32%), Gaps = 101/560 (18%)

Query: 7   DIETR-SPQPLP-KVGVW-------AYAEQAVITLCAYAWDDE--PVKLW---DRTEQSA 52
           D+++  S   L  KV V+       +Y +     LC +A ++E  P  +      T Q A
Sbjct: 318 DLQSYISAIKLSGKVAVYYHVDPTGSYMDD----LCIFACNEEYAPANIVFSEKLTCQEA 373

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKN 111
           + ++L +    + +    H    +     K L    I  +  I  + +A     P+    
Sbjct: 374 L-NELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTY 428

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L   +    +   + L  +  K          +            E C   V A  
Sbjct: 429 TISELYEDKLKQSITPVEILYDKHGKRLQQEQDISSS------------EVCAAAVNAIY 476

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L ++L P+           + E  L  +   +  RG+++D++ +    + +      L+
Sbjct: 477 VLIQKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILE 536

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278
            +I         +      L + LF   G+ +   ++    T   +L   +      + I
Sbjct: 537 NEIYMQAGETF-NINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVERI 595

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L             + L   +  DG++         + TGR S      QN+P       
Sbjct: 596 LEYRQLMKLKSTYADGLLSVLEQDGKIHSNFN-QTVTATGRISSTEPNLQNIP------- 647

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I +N    L+ AD + IE RVLA I  +  
Sbjct: 648 -----------------VKLEMGRKIRKVFIPTNQDYVLLDADYSQIELRVLAHITDDSN 690

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453
            I+AF   EDI+ TT +K F  P ++VS   R+  K +   + Y  G    +K       
Sbjct: 691 MIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVTKK 750

Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492
                +  +         +                         + +S +  M+      
Sbjct: 751 EARQYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNRRRYLPELKSSNFNMRSFGERV 810

Query: 493 AVKDKLIGTACELVKKAWRA 512
           A+   + G+A +++K +   
Sbjct: 811 AMNTPIQGSAADIIKISMVK 830


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 136/382 (35%), Gaps = 66/382 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E         +  RG R+D   + +    +    K+L + I++       +      L
Sbjct: 488 NVELPTVYTLHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIEYAGKDF-NINSPKQL 546

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSH-SNITQLAKDLILNRLASSGSAILKLNTLSE 297
              LF    +     ++    T   +L    N+  +  D++  R  S  ++   +  L  
Sbjct: 547 GPVLFEDMALPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQLSKLNSTYAI-GLGS 605

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +SSDGR+ GT      + TGR S      QN+P +                        
Sbjct: 606 FISSDGRIHGTFN-QTITATGRISSTDPNLQNIPMR------------------------ 640

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   I  +G   V AD + +E RVLA ++ +     AF N  DI+ TT ++ F
Sbjct: 641 MELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVF 700

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             PID+V+  QR   K +   + Y     G ++            ++++    KS  T+ 
Sbjct: 701 GVPIDEVTPLQRRHAKAVNFGIVYGISAFGLSEDLGISRKEASDFIEKYYDTYKSIKTYL 760

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D                       + +S +   +      A+   + G+A +++K A   
Sbjct: 761 DGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQRSFGERVAMNSPIQGSAADIIKIAMLH 820

Query: 513 KH----------QGVLQLWKDL 524
            +          + +LQ+  +L
Sbjct: 821 VNIKLKELGLKSRLILQIHDEL 842



 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M        + G    ++L +HDE++ ET      
Sbjct: 793 QRSFGERVAMNSPIQGSAADIIKIAMLHVNIKLKELGLKSRLILQIHDELLIETAKDEVD 852

Query: 643 SVGTL 647
           +V  +
Sbjct: 853 TVRKI 857


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/524 (15%), Positives = 170/524 (32%), Gaps = 65/524 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    +  + +   +    E       L+Q+L D+    + +++     +    LGI+I
Sbjct: 359 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 415

Query: 89  PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +  +    + +       S+ +   +   + ++  K       I  F KG     P + 
Sbjct: 416 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 469

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+ +           +++  E + ++  L D E  L  +   + + G   D++ + 
Sbjct: 470 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 529

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++  I ++   L  +I +       +      L + LF    + ++  ++    T   +
Sbjct: 530 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 588

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          D IL     +      +  L + +S D R+        A +TGR S   
Sbjct: 589 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 647

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P +                              +R      S    ++ AD + 
Sbjct: 648 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 683

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +   + Y  
Sbjct: 684 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 743

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G ++            +  +  +      +                           
Sbjct: 744 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 803

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            S +  ++      A+   + G+A +++K A     + + +   
Sbjct: 804 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 847



 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M         TK    ++L VHDE++ E P +        +  +M + 
Sbjct: 823 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 882


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 130/379 (34%), Gaps = 58/379 (15%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E  + L    D E  L      +   G R + + +      +     +L+++I ++   
Sbjct: 466 LEETQMLHLFEDIEMPLVFTLYDMERNGIRAEGEALKVYSSQLGGRISELEKEIYEMAGE 525

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L + LF    +     ++       + S + +LA D  +         + 
Sbjct: 526 SF-NINSPKQLGVILFEKLLLPGSKKTKSG--YSTAASVLDKLAPDYPIVSKVLEYRQLT 582

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L   +  DGR+         + TGR S      QN+P              
Sbjct: 583 KLKSTYADGLVNYIEEDGRIHSKFN-QTITATGRISSTEPNLQNIP-------------- 627

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +  +G   V AD + IE RVLA  +G+   I+A+   
Sbjct: 628 ----------VRVELGRLIRKVFVPEDGYIFVDADYSQIELRVLAHCSGDANLIEAYREE 677

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           +DI+  T ++ F+ P ++V+  QR   K +   + Y     G ++            ++ 
Sbjct: 678 KDIHRITASQVFHIPFEEVTPLQRRNAKAVNFGIVYGISSFGLSEDLSIGRKEAAKYIED 737

Query: 462 FSQNVKSTSTFEDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIG 500
           + +      TF D   A +  +                    +MQ  +    A+   + G
Sbjct: 738 YFKTYPGIKTFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNAPIQG 797

Query: 501 TACELVKKAWRAKHQGVLQ 519
           TA +++K A    ++ + +
Sbjct: 798 TAADIMKIAMIGVNRRLKE 816


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/394 (15%), Positives = 135/394 (34%), Gaps = 65/394 (16%)

Query: 156 WQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           W+      ++  +     L+K      + E  L      +   G +++   + +    + 
Sbjct: 501 WKAAAPLTRQLKDTGMYALYK------EIEMPLIYSLYHMEQEGVKVERAELEEYGNRLK 554

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
                L+++I + T     +      L   LF    +     ++       +   + +LA
Sbjct: 555 VRIVDLEQEIYRDTGKEF-NINSPKQLGEILFEDMKMPGGKKTK--TGYSTAADVLDKLA 611

Query: 275 KDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
            D  + +       + KLN+     L+  +  DGR+ G       + TGR S      QN
Sbjct: 612 PDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRIHGKFN-QTITATGRISSTEPNLQN 670

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +   G   V AD + IE R+L
Sbjct: 671 IP------------------------VRMELGREIRKVFVPKEGCVFVDADYSQIELRIL 706

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++G++  I+A+ + +DI+  T ++ F+ P+ +V+  QR   K +   + Y     G +
Sbjct: 707 AHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNFGIVYGISAFGLS 766

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484
           +            + ++ +       F D                       + +S +  
Sbjct: 767 EDLSISRKEAVEYINKYFETYPGVKIFLDGLVSQGKEQGYVTTLYGRRRPIPELKSANFM 826

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
            +      A+   + G+A +++K A  A  + + 
Sbjct: 827 QRQFGERVAMNSPIQGSAADIMKIAMIAVDRELR 860


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/583 (14%), Positives = 187/583 (32%), Gaps = 105/583 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCK 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +++   R + +K   + I          LA     P   +    +L  
Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSL-A 431

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           SE+L K    +  I +  + ++    Y                    +    +++ + L 
Sbjct: 432 SEYLFKNINREDEILKIKEVNMMPKLYKVL----------------EEKIKEQDMEELLY 475

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            +   E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R   K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAVEKGYVNTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
               H+           +LQ+  +L         E      ++
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKK 849


>gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
 gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
          Length = 889

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/596 (14%), Positives = 195/596 (32%), Gaps = 97/596 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   +L+   ++T + V ++    ++L  +  G+D+ +  
Sbjct: 349 FAWSCGD---KLYATDKLELLQDPILKDFLEKTPLKV-YDFKKAKVLLNR-FGLDLQAPA 403

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               N       +++       + KG   + P   T    
Sbjct: 404 F--DSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPERET---- 453

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRID 202
                 F E+  R V    E    L+           L + E+ L  +   +   G ++ 
Sbjct: 454 ------FLEHLARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +L++Q       +KL ++I +L      +      L   LF   G+ +    +    
Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPIEYTKKTKTG 566

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA    + +       I K+ +     L + + +DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G +             +  + +       + D                 
Sbjct: 722 NFGVVYGISDFGLSNNLGISRKDAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 781

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                    S +  ++      A+   + G+A +++K A     + +++           
Sbjct: 782 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQ------- 834

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +    +    V  VP+  +   K+ V   +  + +L    +  +   +    ++
Sbjct: 835 -TKMLLQVHDEIVLEVPKSELAAIKKLVKQTMEEAIQLSVPLIADENEGVTWYEAK 889


>gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF  
Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLFEH 448

Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             +           ++       +L  L + E+ L  +   +   G +++ + +  +Q  
Sbjct: 449 LARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             +  + L ++I  L      +      L   LF   G+ L    +       +   + +
Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    +         I KL +     L EA+++DG++         ++TGR S      
Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386
           QN+P                                +R   +       L+ +D + IE 
Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442
           RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y    
Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480
            G A             +Q + +       + +                          S
Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            +  +++     A+   + G+A +++K A     + +       ++   + +     V  
Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842

Query: 535 GGSISARRVAN 545
               + R++  
Sbjct: 843 DELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/524 (15%), Positives = 171/524 (32%), Gaps = 65/524 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    +  + +   +    E       L+Q+L D+    + +++     +    LGI+I
Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388

Query: 89  PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +  +    + +       S+ +   +   + ++  K       I  F KG     P + 
Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+ +           +++  E + ++  L D E  L  +   + + G   D++ + 
Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++  I ++   L  +I +       +      L + LF    + ++  ++    T   +
Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          D IL     +      +  L + +S D R+        A +TGR S   
Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P +                              +R      S    ++ AD + 
Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +   + Y  
Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G ++            +  +  +      +                           
Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            S ++ ++      A+   + G+A +++K A     + + +   
Sbjct: 777 TSRNVNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820



 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M         TK    ++L VHDE++ E P +        +  +M + 
Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 105/614 (17%), Positives = 193/614 (31%), Gaps = 132/614 (21%)

Query: 72  NSLFERILFKKTLGIDIPSKRW---ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           N+  E  +       DI        I    +A     P  L+N     + +     M   
Sbjct: 366 NAKAELTILNIKENNDILENDDAESIFDISIAAYLLNP--LQNTYDYDDIAREYLGMN-V 422

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEAT-RELFKRLIPLSDGER 185
            A    F K   +  P D    N ++   +  +  Y  +D      +  + L   ++ E 
Sbjct: 423 PAFDEIFPKTKKNETPSDEIPENILKYACYNAYVAYKAKDALTEKLKETEMLDIYNNVEI 482

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L      +   G  +  D + +  E +      L++DI         +      L   L
Sbjct: 483 PLTYALYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGHEF-NINSPKQLGEIL 541

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300
           F    +     ++    +  S   + +L  D            + KL     + L+  + 
Sbjct: 542 FGEMQLPGGKKTKTGYSTSAS--VLEKLEPDYPFVSKILEYRQLAKLKSTYADGLAVYIG 599

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            D R+ G       + TGR S      QN+P                     +  PLG  
Sbjct: 600 EDNRIHGKFN-QTITATGRISSTEPNLQNIP---------------------VRMPLG-- 635

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   I   G   + AD + IE R+LA ++ +   I A+ + +DI+  T +  F+ P
Sbjct: 636 -REIRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVP 694

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +++V+KEQR+  K +   + Y   +     +++   +  ++  Q +K    F  +     
Sbjct: 695 LEEVTKEQRSNAKAVNFGIVYGISS---FGLSNDLSISRKEAEQYIKD--YFISYP---- 745

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                        +K+ L  +  E  +K +     G  +   +LT G             
Sbjct: 746 ------------GIKNYLDNSVKEAKEKGYSVTMFGRRRPIPELTSG------------- 780

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                              +      R+  +                             
Sbjct: 781 -----------------NFMQRQFGERVAMNSP--------------------------- 796

Query: 601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN 654
            +Q  + DI+   M N  K          IVL VHDE++ E  +     V  +  ++ +N
Sbjct: 797 -IQGSAADIMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENE---VEQVKDILKRN 852

Query: 655 PSWAKGL--PLKAE 666
              A  L  PL  +
Sbjct: 853 MEQAAHLNVPLDVD 866


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/524 (15%), Positives = 170/524 (32%), Gaps = 65/524 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    +  + +   +    E       L+Q+L D+    + +++     +    LGI+I
Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388

Query: 89  PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +  +    + +       S+ +   +   + ++  K       I  F KG     P + 
Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+ +           +++  E + ++  L D E  L  +   + + G   D++ + 
Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++  I ++   L  +I +       +      L + LF    + ++  ++    T   +
Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          D IL     +      +  L + +S D R+        A +TGR S   
Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P +                              +R      S    ++ AD + 
Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +   + Y  
Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G ++            +  +  +      +                           
Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            S +  ++      A+   + G+A +++K A     + + +   
Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820



 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M         TK    ++L VHDE++ E P +        +  +M + 
Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 65/384 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + ER L  +   +   G+++D D +++  + I  +  KL+  I ++      +     
Sbjct: 449 YENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWF-NINSPK 507

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + ++  ++    T   +L           LIL+    +         L 
Sbjct: 508 QLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLL 567

Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           +A++   GR+  T    G + TGR +      QN+P +                      
Sbjct: 568 QAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY--------------------- 605

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+
Sbjct: 606 ---DEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAE 662

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F   I  V+ E R+  K +   + Y     G A+  K         + ++ +       
Sbjct: 663 VFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVKE 722

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D     +                      +  ++      A+   + G+A +++K A 
Sbjct: 723 YIDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAM 782

Query: 511 RAKHQG----------VLQLWKDL 524
              +Q           +LQ+  +L
Sbjct: 783 IKVYQKLKENNLKSKIILQVHDEL 806



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 11/147 (7%)

Query: 511 RAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +A + G++    D        + ++  +    R       V       V     +   L 
Sbjct: 680 KAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVKEYIDNTVKFARDNGFVLT 739

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GY 622
             + K    Y+    S     R Y  ++  N  +Q  + DI+   M    +         
Sbjct: 740 LFNRK---RYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKS 796

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS 649
            I+L VHDE++ E P      V  +  
Sbjct: 797 KIILQVHDELLIEAPYEEKDIVKEIVK 823


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 76/411 (18%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF +    D +   ++++      D E  L  +   +   G  ID  L+ +    +  +
Sbjct: 470 RLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKMEQNGVLIDTKLLDQQTAQLNTK 522

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKS--ILSHSNITQL 273
            ++L+E   ++     + S     L   LF   G+ L     + T+      S   +++L
Sbjct: 523 ARELEEQAFEVAGENFKLS-SPKQLGEILFDKMGVVLEGAKPKKTISGNYSTSEEVLSEL 581

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
           A++  L ++A     I KL       L + V   DGR+  T +    + TGR S      
Sbjct: 582 AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGRLSSTNPNL 640

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              VR   I+++G KL+ AD + IE R
Sbjct: 641 QNIPIRT------------------------EEGRKVREAFISASGCKLISADYSQIELR 676

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444
           ++A ++ +   ++AF N EDI+  T A+ F    DKV+   R I KV+   L Y      
Sbjct: 677 IMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFG 736

Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQY--- 489
            AK            + +F         + +  +A +             LW+ + +   
Sbjct: 737 LAKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHAGG 796

Query: 490 ------PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
                    A+   + GTA +L+K +  A          K + +LQ+  +L
Sbjct: 797 ARRAAAERAAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDEL 847



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + D++   M        + G    ++L +HDE++ E P+     V   L  +M
Sbjct: 812 QGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 867


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/532 (15%), Positives = 165/532 (31%), Gaps = 89/532 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       D   V + +  + +  P +L+++L ++      +++          L ID
Sbjct: 331 ADILKFGIQADGHFV-VINAEQINDYP-ELVEWLENDQTRKRVYDAKK-TYAEAHRLNID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPP-- 144
           I +  +    + +       S+ +   +  N+ ++          +  + KG     P  
Sbjct: 388 IKNVSF-DIMLASYILDPSRSIDDVYSVVHNYGQNYV-----AEEVNIYGKGRKRQIPED 441

Query: 145 ----------YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      D    +    +    E+ + D      LF+ L      E  L  +   +
Sbjct: 442 EVLDTYIASILDAISESTPIMYDQLEEFNQLD------LFESL------ELPLARILGEM 489

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            + G   D+D + ++++ I  +   L   I         +      L + LF    + ++
Sbjct: 490 EELGIYTDVDELKEMEKEIQGKLDTLITRIHDAAGEDF-NINSPKQLGVVLFENLKLPVI 548

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             ++    T   +L          D IL     S      +  L + + +D R+      
Sbjct: 549 KKTKTGYSTAVDVLEQLQGEHPIIDDILEYRQLSKLQSTYIEGLQKVIQNDHRIHTHFNQ 608

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IA 370
             A +TGR S      QN+P                                +R     A
Sbjct: 609 TLA-QTGRLSSVDPNLQNIP------------------------VRLEEGRRIRKAFKPA 643

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  ++ AD + IE RVLA I  ++  IKAF  G DI+  T  K F    D+V    R 
Sbjct: 644 EPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRR 703

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------- 473
             K +   + Y     G ++            +  +  +      +              
Sbjct: 704 QAKAVNFGIVYGISDYGLSQSLGITRKAAKQFIDDYLDSFPGVKQYMSDIVKDAKAKGYV 763

Query: 474 --------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                         S +   +      A+   + G+A +++K A     + +
Sbjct: 764 ETLLHRRRYIPDITSRNFNRRSFAERTAMNTPIQGSAADIIKLAMVNFDKEI 815


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/523 (14%), Positives = 177/523 (33%), Gaps = 76/523 (14%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLKNACLALN 117
            DET     +++    +  +   G+ +    +     +A     PS     + +      
Sbjct: 363 EDETKKKTVYDAKRSEVSLRHH-GVHLKGADF--DLYIASYLINPSQTIEDMASIAKNHG 419

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           ++         ++  A + KG+    P +   A H+          K  +++  +  ++ 
Sbjct: 420 YNA-------IQSDEAFYGKGAKRRIPEEKELAGHLARKAAALMTLKEKLDSELKENQQS 472

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
               D E  L L+   +   G ++DL+ +  + + +  +  ++++ I +L      +   
Sbjct: 473 ELFYDLEMPLSLILADMESTGIKVDLERLKTMGQDLLSKLDEIEKRIHELAGEAF-NINS 531

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L + LF   G+  +  ++    T   +L     +      IL+           +  
Sbjct: 532 PKQLGVILFEKLGLPAIKKTKTGYSTSADVLEKLENSHEIIRDILHYRQLGKLQSTYIEG 591

Query: 295 LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L + V+   G++         ++TGR S      QN+P +                    
Sbjct: 592 LLKVVNYETGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 630

Query: 354 ADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   + S  G  +  AD + IE RVLA IA ++  I+AF    DI+  T
Sbjct: 631 ----LEEGRKIRQAFVPSEPGWAIFAADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKT 686

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
             + F+   ++V+   R   K +   + Y     G ++         G  + ++ ++   
Sbjct: 687 AMEVFHVNANEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAGKFIDRYLESYPG 746

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + D                       +  S +  ++      A+   + G+A +++K
Sbjct: 747 VKQYMDDIIHDAKQKGYVSTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIK 806

Query: 508 KAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544
           KA       +       +L   + +     V E    + +++ 
Sbjct: 807 KAMIDMADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIV 849


>gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF  
Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLFEH 448

Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             +           ++       +L  L + E+ L  +   +   G +++ + +  +Q  
Sbjct: 449 LARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             +  + L ++I  L      +      L   LF   G+ L    +       +   + +
Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    +         I KL +     L EA+++DG++         ++TGR S      
Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386
           QN+P                                +R   +       L+ +D + IE 
Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442
           RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y    
Sbjct: 663 RVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480
            G A             +Q + +       + +                          S
Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            +  +++     A+   + G+A +++K A     + +       ++   + +     V  
Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842

Query: 535 GGSISARRVAN 545
               + R++  
Sbjct: 843 DELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/512 (16%), Positives = 170/512 (33%), Gaps = 74/512 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +   L DE +  + ++   E +     L  DI  +       +A+    P +      
Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSL---LPYDISLRGIKYDLKIAKYLLSPDNNSYDIS 416

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--- 171
            +     L+ ++  +     F KG  +      T+    + +    +      +      
Sbjct: 417 EIAMEYGLSHLQSHEEF---FGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTAI 473

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              +      D E  L  +   +   G  ID   +   +   AQ   +L+ +I +L    
Sbjct: 474 RDSEMTKLFEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELAGEE 533

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L + LF    +  V  ++    T  ++L   +        I++    +   
Sbjct: 534 F-NINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIISYRQYTKLQ 592

Query: 289 ILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +  L   ++ +  R+  +     A+ TGR S      QN+P                
Sbjct: 593 STYVEGLLNIINPNTERIHSSFNQTIAA-TGRISSTEPNLQNIP---------------- 635

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   IA  G  LV +D + IE RVLA I+ E+  I+AF+   D
Sbjct: 636 --------VRLEIGRNLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEALIQAFSKDAD 687

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T ++ F   I +V+KEQR   K +   + Y     G +          G  ++ + 
Sbjct: 688 IHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYGISDFGLSNNLGITKKKAGQYIKTYL 747

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
              K+   +                         Q +  ++ +++     A+   + G+A
Sbjct: 748 DRYKNIEKYMQDVVAFGEEHGYVTTILGRRRSIPQLKQKNIMIKNLGKRLAMNTPIQGSA 807

Query: 503 CELVKKAWRA----------KHQGVLQLWKDL 524
            +++K A             K + +LQ+  +L
Sbjct: 808 ADIIKIAMVRVSNRLKRENLKSKLILQVHDEL 839



 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 594 GGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           G +L  N  +Q  + DI+   M               ++L VHDE++ E        +  
Sbjct: 794 GKRLAMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDELIIEATADEQDYIKA 853

Query: 647 LC-SLMTKN 654
           L    M+K 
Sbjct: 854 LLQEEMSKA 862


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 165/516 (31%), Gaps = 104/516 (20%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG----LPSSLKNA 112
           L   L D++V+ V  N  ++  +  +  GI +               G    +P      
Sbjct: 466 LKPLLEDDSVLKVGQNIKYDLTVLARH-GIAVAPIDDTMVMSFCLDAGRGEPMPFGHGMD 524

Query: 113 CLALN-FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            LA         K ++    GK  I  F +  +     D TR            Y   D 
Sbjct: 525 ELAERHLGHTTIKFKDVAGTGKKAI-SFAEVPLP----DATR------------YAAEDA 567

Query: 168 EATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           E T  L   L P    E          R L  +  T+   G ++D + +  L    A   
Sbjct: 568 EVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLATLSGEFATRI 627

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSN 269
             L+  I +              L   LF   G               +  L+++ S   
Sbjct: 628 AALESVIHEKAGTTFTI-GSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQSVLETLASQG- 685

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             ++A  ++  R  S   +    + L  A++   GR+  +    GA +TGR S      Q
Sbjct: 686 -AEVATLVLEWRQLSKLKST-YTDALQAAINPATGRVHTSYSLVGA-QTGRLSSNDPNLQ 742

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                              +R   +A  G  L+ AD + IE R+
Sbjct: 743 NIPVRT------------------------EIGRQIRDAFVAEPGHVLLSADYSQIELRL 778

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
            A IA      +AFA+GEDI+  T  + F     +V+++ R   K +  A+ Y     G 
Sbjct: 779 AAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILYGISRWGL 834

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483
           A    T A      + ++ +       +                       + +  S   
Sbjct: 835 ATRLGTSADEAQAMIDRYFERFPGIQRYIHETLEHVRDRGYSETLFGRKTWFPRIASKTQ 894

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +      A+   + GT  +++K+A       +++
Sbjct: 895 AERAGSERAAINAPIQGTCADIIKRAMARMTPALVE 930


>gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P+  +   + LA+                         + +     + KG
Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          +  ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF   G+ L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA+++DG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             +Q + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V      + R++  
Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 155/479 (32%), Gaps = 79/479 (16%)

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGK 129
           HN +F+       L   + S+             + P+                K EE  
Sbjct: 392 HNDMFDA-GLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAANEKEEE-- 448

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            L    C  +  +     +    ++             E  +EL+      +D E  L  
Sbjct: 449 -LAKSVCYMAYTALKSRTSLLEALEK------------ENMKELY------TDMEMPLLF 489

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               +   G  ++ + + +  E +    + L+++I +       +      L + LF   
Sbjct: 490 TLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKL 548

Query: 250 GIDLVDMSE---GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
            +     ++    T   +L       +L  D++  R   +       + L+  ++ DGR+
Sbjct: 549 ELPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAEDGRI 607

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      + TGR S      QN+P +                              +R
Sbjct: 608 HSTFN-QTITATGRISSTEPNLQNIPVRT------------------------ELGRLLR 642

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              I  +G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+
Sbjct: 643 KVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVT 702

Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
             QR   K +   + Y     G ++            ++ + Q       F D    E+ 
Sbjct: 703 PLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGFLDGLVEEAK 762

Query: 482 HLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                           A+   + GTA +++K A    ++ + +
Sbjct: 763 EKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKE 821



 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M    K          +VL VHDE++ ET      
Sbjct: 787 QRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVE 846

Query: 643 SVGTLCSL 650
            V  +   
Sbjct: 847 QVSAILEQ 854


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 139/402 (34%), Gaps = 68/402 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +  +G ++D  +   L   +  E +   + I  L      +      L
Sbjct: 501 DMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQL 559

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+    + +  + +G          + +LA+   L        ++ KL     +TL 
Sbjct: 560 AQVLYEKLQLPI--LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLP 617

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             V+ DGR+  T     A+ TGR S      QN+P +                       
Sbjct: 618 GLVAKDGRIHTTY-HQAATATGRLSSSDPNLQNIPVRT---------------------- 654

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +A  G +LV AD + +E R+LA IA +   + AF + EDI+  T A+ 
Sbjct: 655 --ELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEI 712

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST-ST 471
           F    DKV ++QR + K +   + Y     G +             ++++          
Sbjct: 713 FGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTRLSISVEEARDIIERYFTRYAGIRRY 772

Query: 472 FEDWEQAESHHLWMQDQYPE--------------------FAVKDKLIGTACELVKKAWR 511
            ED  +      +++  +                       A+   + GTA +L+KKA  
Sbjct: 773 LEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAERAAINMPIQGTAADLIKKAML 832

Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543
           A  +           +LQ+  +L         +     AR+ 
Sbjct: 833 AVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQC 874



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLCSL-MT 652
           +Q  + D++ + M    +         V+   VHDE++ E P+     V  L    M+
Sbjct: 819 IQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMS 876


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 121/363 (33%), Gaps = 54/363 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L      +   G R++ D + +  + +A +  +L+++I +       +      L
Sbjct: 473 DIEMPLVFTLFDMEQNGIRVEADALKQYGDQLAGKIAELEKEIYEEAGETF-NINSPKQL 531

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF    +     ++    T   +L            IL     +       + L+  
Sbjct: 532 GVVLFENMKLPGGRKTKTGYSTAADVLEKLAPEHPVVAKILEYRQYTKLKSTYADGLANY 591

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DGR+ G       + TGR S      QN+P                           
Sbjct: 592 IQDDGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VRM 626

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   I   G + V AD + IE RVLA  +G++  I+A+    DI+  T ++ F+
Sbjct: 627 ELGRLIRKVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFH 686

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            P D+V+ +QR   K +   + Y     G ++            +  +        TF D
Sbjct: 687 IPFDEVTPQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFATYPGIKTFLD 746

Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  S +   +      A+   + G A +++K A    
Sbjct: 747 HAVTHAKEEGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGAAADIIKIAMIRV 806

Query: 514 HQG 516
           +Q 
Sbjct: 807 NQR 809


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 972

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/521 (17%), Positives = 172/521 (33%), Gaps = 107/521 (20%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL 105
             S  P    + L       V HN+ F+  +  +T G+    I S   I T + A     
Sbjct: 446 SGSKQPDSAKRSL-------VFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSP 498

Query: 106 P-SSLKNACLALNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
             + L      +   +H        +  GK  I  F +  I     D T           
Sbjct: 499 GQTGLGLDNQVMQLLQHEMIPIENLIGRGKKQIT-FNRTPIK----DAT----------- 542

Query: 160 GEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKL 209
            EY   D   T  L+  L                E  L  +   +   G  +D  ++ KL
Sbjct: 543 -EYGAEDAVYTLRLWAPLRAKLQKYDYEKYFFSQEMPLLKVLYQMEGVGAFVDTKILKKL 601

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---SEGTLKSIL- 265
           Q  +    +KL+++I  +      +      L   LF   G+  +         L+ +  
Sbjct: 602 QTDLEHRIEKLEKEICDMAGCEF-NIGSPKQLGEVLFDTLGLPEIKKRSTDAAVLEELSF 660

Query: 266 --SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
             +H  +  + +   L ++ S+  ++     L   V+ D  R+  +   +G + TGR S 
Sbjct: 661 RSAHPIVFAVIEYRELKKMQSTYVSV-----LPTLVNPDTKRIHTSFIQWG-TATGRLSS 714

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P +                              +R+  +       ++  D 
Sbjct: 715 RDPNLQNIPVRS------------------------DLGKQIRAAFVPQNPNNVILAVDY 750

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA ++G++  I+++  G DI+  T A      ++ V+ + R   KV+   + Y
Sbjct: 751 SQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTADMRRDAKVVNFGVLY 810

Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------- 488
              A    +  K   +     +  + +  +    F D  +A +H     +          
Sbjct: 811 GMTAFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAHRDGYVETLSGRRRYIA 870

Query: 489 ------------YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                           AV   + G+A +L+K A     + +
Sbjct: 871 GIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRI 911



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               VQ  + D++   M    K          ++L VHDE+V E P     ++  +  
Sbjct: 888 VNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQVHDELVFECPKDQVEALSAMVK 945


>gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
 gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
          Length = 881

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/534 (14%), Positives = 170/534 (31%), Gaps = 87/534 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           + I   A++  +        T+  ++  D  L  +L D        ++    +   + +G
Sbjct: 334 SEIVGFAWSNGN----RIYVTDNLSLLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVG 389

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                      S+LA          ++   L    H   + E +   A + KG+    P 
Sbjct: 390 ---SPNGIQFDSLLACYL---LDTNDSSNDLALVAHRYGLTEIETDEAVYGKGAKKGLPE 443

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTIN 195
           D          + F  +  R V   ++L  +L              + E  L  +   + 
Sbjct: 444 DN---------ERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEME 494

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  +D   ++ ++   A +   ++E I    +    +      L + LF   G+ ++ 
Sbjct: 495 ITGIHVDAQRLIAMKSEFATKLHDIEEKIYAQANERF-NLNSPKQLGVILFEKMGLPVIK 553

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            ++    T   +L    +     + IL     +      +  L   + SDG++       
Sbjct: 554 KTKTGYSTAVDVLEQLKVQAPIVEDILTYRQIAKIQSTYVEGLLRMIQSDGKVHTRYV-Q 612

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             ++TGR S      QN+P +                              +R   +  N
Sbjct: 613 TLTQTGRLSSVDPNLQNIPIR------------------------LEEGRKIRQAFVPRN 648

Query: 373 -GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRA 430
               +  +D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R 
Sbjct: 649 KNWVIYSSDYSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRR 708

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------ 474
             K +   + Y     G ++            +  + +       + +            
Sbjct: 709 QAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYFERYPGVKAYMENVVEQAKKDGYV 768

Query: 475 ---------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                         + +  ++      A+   + G+A +++K A    ++ + +
Sbjct: 769 ETLYHRRRYLPDLYAKNYNIRSFAERTAINSPIQGSAADILKIAMIEMNKRLKE 822



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M          K    ++L VHDE+V E P+     V  L   +M   
Sbjct: 801 IQGSAADILKIAMIEMNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHA 860

Query: 655 PSWAKGLPLKAE 666
            + A  +PL  +
Sbjct: 861 VTLA--IPLVTD 870


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 125/693 (18%), Positives = 218/693 (31%), Gaps = 155/693 (22%)

Query: 4   LFIDIETRSPQP----LPKVGV-WAYAEQAVITLCAY-AWDDEPV-KLWDRTEQSAMP-S 55
           + ID ET    P    L  VGV W  A  A     AY     +P  +L + T    +P  
Sbjct: 400 IAIDTETTDLNPFKAELVGVGVCWGEANDA----LAYIPIGHKPPSELTEATPPQQLPLE 455

Query: 56  DLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSL 109
            +L  L              N+ ++R++  +     +     +  ++LA           
Sbjct: 456 TVLMALSPWLASPQHPKALQNAKYDRLILLRH---GLTLNGVVIDTLLADYLRDAAAKHG 512

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +      F    T   +       F    I+                    YC  DV  
Sbjct: 513 LDVMSEREFGFRPTTYGDLVGKKQTFADVEIEPA----------------SLYCGMDVHV 556

Query: 170 TRELF-----------KRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           TR L             +L+PL +  E+ L  +   +   G RID+  +  L + +    
Sbjct: 557 TRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTL 616

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
            +L+ +  ++ +     +     L   LF   G+D               + + +L  D 
Sbjct: 617 NRLETEAKQVAEVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLEHDH 675

Query: 278 ILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +  L      + KL     + L + V +  GR+         + TGR S      QN+P
Sbjct: 676 PVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIP 734

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                           S  +R   +   G  L+ AD + IE R+L  
Sbjct: 735 VRT------------------------EYSRRIRKAFLPQEGWTLLSADYSQIELRILTH 770

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++GE+   +A+  G+D++  T     +   D+VS +QR +GK +   + Y  GA+ F   
Sbjct: 771 LSGEEVLQEAYRTGDDVHALTARLLLDK--DEVSADQRRLGKTINFGVIYGMGAQRF--- 825

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           A   G+   +  + +        ++Q         +     A+    + T          
Sbjct: 826 ARETGVSSAEAKEFL------TKYKQRYPKVFAFLELQERLALSRGYVET---------- 869

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLV 569
                                     +  RR  +  R  + R   K  + I L  +RR  
Sbjct: 870 -------------------------ILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARR-- 902

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYD 623
                          +Q +R            +Q  S DI+   M               
Sbjct: 903 -----------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAMLLSQGIPAR 945

Query: 624 IVLTVHDEIVSET-PDTPYFSVGTLCSLMTKNP 655
           ++L VHDE+V E  PD    +   + + M    
Sbjct: 946 LLLQVHDELVLEVAPDALDTTRNLVVNTMENAI 978


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 66/391 (16%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +  ++   G  +D   +    + +  + + L+  I +L  G   +      L 
Sbjct: 532 IEMPLVRVLASMERAGMYVDPARLAAQSDELVGQIQALEARIRELAGGEEFNLSSPMQLS 591

Query: 243 MYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296
             LF   G+    + +        +   +  LAK+  + RL        K     L+TL 
Sbjct: 592 RILFDTLGLPTAGLKKTQRGYYSTNAKVLEDLAKNHEIVRLILEFREKTKIKSTYLDTLG 651

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                DGR+  T      + TGR S      QN+P +                       
Sbjct: 652 PLRRHDGRVHTTYN-QTITATGRLSSSSPNLQNIPTRS---------------------- 688

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  V+       G   V  D + IE R+LA ++G++  + AF  GED +  T A+ 
Sbjct: 689 --ELGHAVKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAARV 746

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P+D+V+ + R+  K +   + Y     G ++      +     +  + +      T+
Sbjct: 747 FGVPVDEVTPQLRSRAKAVNFGIVYGQQAYGLSQTLDIPMAEAREMIDAYFRAYPGVRTY 806

Query: 473 EDWEQAESHHLWMQDQ-------------------YPEFAVKDKLIGTACELVKKAWRAK 513
            D     +      +                        A+   + G+A +++K A    
Sbjct: 807 LDETVTFAKQTGYAETMYGRRRPIPELRIPAQRMFGERTAMNHPMQGSAADIIKIAMVHV 866

Query: 514 HQG----------VLQLWKDLTEGFACVVQE 534
            +           +LQ+  +L   F C V E
Sbjct: 867 AERLRAEGFTAKMILQVHDELD--FECPVGE 895


>gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF  
Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLFEH 448

Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             +           ++       +L  L + E+ L  +   +   G +++ + +  +Q  
Sbjct: 449 LARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             +  + L ++I  L      +      L   LF   G+ L    +       +   + +
Sbjct: 509 NEKTLESLTQEIYDLAGQKF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    +         I KL +     L EA+++DG++         ++TGR S      
Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386
           QN+P                                +R   +       L+ +D + IE 
Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442
           RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y    
Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480
            G A             +Q + +       + +                          S
Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            +  +++     A+   + G+A +++K A     + +       ++   + +     V  
Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842

Query: 535 GGSISARRVAN 545
               + R++  
Sbjct: 843 DELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 152/450 (33%), Gaps = 87/450 (19%)

Query: 154 QAWQLFGEYCKRDVEATRE--------LFKRLIP--------------LSDGERDLWLLD 191
           +   LF  Y   D+EA R+        L KRL                  + ER L  + 
Sbjct: 401 ELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVL 460

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G+++D D +L+  + I  +  KL+  I ++      +      L   LF    +
Sbjct: 461 YEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWF-NINSPKQLSYILFEKLKL 519

Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307
            ++  ++    T   +L           LIL+    +         L +A++   GR+  
Sbjct: 520 PVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHT 579

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T    G + TGR +      QN+P +                              +R  
Sbjct: 580 TFIQTG-TATGRLASSDPNLQNIPVKY------------------------DEGKLIRKV 614

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I  V+ E
Sbjct: 615 FVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPE 674

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-- 481
            R+  K +   + Y     G A+  K         + ++ +       + D     +   
Sbjct: 675 MRSQAKAVNFGIVYGISDYGLARDVKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDN 734

Query: 482 -------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------ 516
                              +  ++      A+   + G+A +++K A    +Q       
Sbjct: 735 GFVLTLFNRKRYVKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNL 794

Query: 517 ----VLQLWKDLTEGFACVVQEGGSISARR 542
               +LQ+  +L        ++      +R
Sbjct: 795 KSKIILQVHDELLIEAPYEEKDIVKRIVKR 824



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R Y  ++  N  +Q  + DI+   M    +          I+L VHDE++ E P     
Sbjct: 757 LRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKD 816

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 817 IVKRIVK 823


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 152/450 (33%), Gaps = 87/450 (19%)

Query: 154 QAWQLFGEYCKRDVEATRE--------LFKRLIP--------------LSDGERDLWLLD 191
           +   LF  Y   D+EA R+        L KRL                  + ER L  + 
Sbjct: 401 ELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVL 460

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G+++D D +L+  + I  +  KL+  I ++      +      L   LF    +
Sbjct: 461 YEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWF-NINSPKQLSYILFEKLKL 519

Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307
            ++  ++    T   +L           LIL+    +         L +A++   GR+  
Sbjct: 520 PVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHT 579

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T    G + TGR +      QN+P +                              +R  
Sbjct: 580 TFIQTG-TATGRLASSDPNLQNIPVKY------------------------DEGKLIRKV 614

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F   I  V+ E
Sbjct: 615 FVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPE 674

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-- 481
            R+  K +   + Y     G A+  K         + ++ +       + D     +   
Sbjct: 675 MRSQAKAVNFGIVYGISDYGLARDVKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDN 734

Query: 482 -------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------ 516
                              +  ++      A+   + G+A +++K A    +Q       
Sbjct: 735 GFVLTLFNRKRYVKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNL 794

Query: 517 ----VLQLWKDLTEGFACVVQEGGSISARR 542
               +LQ+  +L        ++      +R
Sbjct: 795 KSKIILQVHDELLIEAPYEEKDIVKRIVKR 824



 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R Y  ++  N  +Q  + DI+   M    +          I+L VHDE++ E P     
Sbjct: 757 LRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKD 816

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 817 IVKRIVK 823


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/543 (18%), Positives = 185/543 (34%), Gaps = 75/543 (13%)

Query: 14  QPLPKVGVW----AYAEQAVITLCAY--AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
             + K GV+     + E   I   AY  A      K +             +Y   + + 
Sbjct: 324 DDIEKDGVFYFKSIFEEDNYIHSNAYKIAIKTSSSKTYIYNPDEKFVEKFKKYFEADNIK 383

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            V+ +   E I+    LGI+I    +  T ++        S  +      FS+   K  E
Sbjct: 384 KVSFDIK-EDIVLFDKLGINISLP-YDDTMLMHYLIDPSRSSYDL---KTFSQAFLKY-E 437

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------ 181
            +       KG       D    N  +         +  ++    L ++L  LS      
Sbjct: 438 VENEEDLLGKGKSKKSYKDLDSDNLGKYLASIVNAIEDSLDI---LTQKLEELSMYDLYK 494

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G+  D + + K+++ ++ E   L++ I +L      +      L
Sbjct: 495 DCEIKLSKVLADMEITGFICDKNELEKIKDEVSLELGDLEKIIYELAGSEF-NINSPKQL 553

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          + I             L +L E 
Sbjct: 554 SKILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIEKIERYREMYKLKSTYLESLEEC 613

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DGR+R T +    + TGR S      QNLP +                         
Sbjct: 614 IDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLPIRT------------------------ 648

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R    A +GK L+ AD + IE RVLA +A +    +AF+   DI+  T ++ F+
Sbjct: 649 EEGRKIRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTKTASEVFS 708

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE- 473
           TPID+V+K QR+  K +   + Y     G ++            ++ +         +  
Sbjct: 709 TPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRKRAKEYIENYLDTYPEIKKYMK 768

Query: 474 --------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  S +  ++      A+   + GTA +++K A    
Sbjct: 769 DIVKKAKEDGYVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPIQGTAADIIKFAMINS 828

Query: 514 HQG 516
           +Q 
Sbjct: 829 YQN 831



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612
           K+ +  ++  ++   Y + +     Y+    S+    R++G ++  N  +Q  + DI+  
Sbjct: 764 KKYMKDIVKKAKEDGYVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPIQGTAADIIKF 823

Query: 613 GM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            M          K    IVL +HDEI+ E           +
Sbjct: 824 AMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKEI 864


>gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/510 (15%), Positives = 173/510 (33%), Gaps = 94/510 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + +   DE +  ++H+     ++ +K    DI +K +   + +A     PS        +
Sbjct: 380 IKKLFEDENIKKISHDIKNIYVILRKY---DIDAKNFSFDTKIAAYLLQPSKSDYILRDI 436

Query: 117 NFSEHLTKMEEGKALIA---RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
              +    + E          +C   I        ++ +++  +LF              
Sbjct: 437 ILEKLSINIHESDEESKIKETYCIKEIYEKLQKEIKSANME--ELFYN------------ 482

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                     E  L  +  ++   G++ID D + ++ E    + + L+++I +  D    
Sbjct: 483 ---------VELPLVKVLASMECEGFKIDKDRLTEIGEKFKVKIETLEKEIHEFADEDF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           + +    L   LF    + ++  ++    T   +L     +      I+     +     
Sbjct: 533 NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIEYRQITKLDST 592

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L   +  DG++  +      + TGR S      QN+P +                 
Sbjct: 593 YVEGLKHVIDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY---------------- 635

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   + +N + ++  AD + IE RVLA IA ++  I AF + +DI+
Sbjct: 636 --------EMGREIRKVFVPNNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIH 687

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQN 465
             T ++ F   ID+V+   R+  K +   + Y  GA    K            +  +   
Sbjct: 688 TITASEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSR 747

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
             +   + D                       + +S +  ++      A+   + G+A +
Sbjct: 748 YPNVKKYIDEIISKAEQDGFVTTIMNRKRYIPEVQSRNKIVRSFGERLAMNTPIQGSAAD 807

Query: 505 LVKKAW----------RAKHQGVLQLWKDL 524
           ++K A             K   +LQ+  +L
Sbjct: 808 VIKLAMVHVYEELIKRNLKSTLILQVHDEL 837


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 139/402 (34%), Gaps = 65/402 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + ER L  +   +   G+++D D +L+  + I  +  KL+  I ++      +     
Sbjct: 449 YENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKILKLETQIYQIAGEWF-NINSPK 507

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + ++  ++    T   +L           LIL+    +         L 
Sbjct: 508 QLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLL 567

Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           +A++   GR+  T    G + TGR +      QN+P +                      
Sbjct: 568 QAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY--------------------- 605

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+
Sbjct: 606 ---DEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQTAAE 662

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F   I  V+ E R+  K +   + Y     G A+  K         + ++ +       
Sbjct: 663 VFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKE 722

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D                      +  +S +   +      A+   + G+A +++K A 
Sbjct: 723 YLDNIVRFARENGYVLTLFNRKRYVKDIKSANRNARSYAERIAMNSPIQGSAADIMKLAM 782

Query: 511 RAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
              +Q           +LQ+  +L        ++      +R
Sbjct: 783 IKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVKR 824



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 11/147 (7%)

Query: 511 RAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +A + G++    D        + ++  +    +       V       V     +   L 
Sbjct: 680 KAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLDNIVRFARENGYVLT 739

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GY 622
             + K    Y+    S     R+Y  ++  N  +Q  + DI+   M    +         
Sbjct: 740 LFNRK---RYVKDIKSANRNARSYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKS 796

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS 649
            I+L VHDE++ E P      V  +  
Sbjct: 797 KIILQVHDELLIEAPYEEKDIVKRIVK 823


>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1]
 gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 876

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 65/384 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + ER L  +   +   G+++D D +++  + I  +  KL+  I ++      +     
Sbjct: 449 YENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWF-NINSPK 507

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + ++  ++    T   +L           LIL+    +         L 
Sbjct: 508 QLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLL 567

Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           +A++   GR+  T    G + TGR +      QN+P +                      
Sbjct: 568 QAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY--------------------- 605

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+
Sbjct: 606 ---DEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAE 662

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F   I  V+ E R+  K +   + Y     G A+  K         + ++ +       
Sbjct: 663 VFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKE 722

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D     +                      +  ++      A+   + G+A +++K A 
Sbjct: 723 YLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAM 782

Query: 511 RAKHQG----------VLQLWKDL 524
              +Q           +LQ+  +L
Sbjct: 783 IKVYQKLKENNLKSKIILQVHDEL 806



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 11/147 (7%)

Query: 511 RAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +A + G++    D        + ++  +    +       V       V     +   L 
Sbjct: 680 KAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLT 739

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GY 622
             + K    Y+    S     R Y  ++  N  +Q  + DI+   M    +         
Sbjct: 740 LFNRK---RYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKS 796

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS 649
            I+L VHDE++ E P      V  +  
Sbjct: 797 KIILQVHDELLIEAPYEEKDIVKEIVK 823


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/509 (15%), Positives = 168/509 (33%), Gaps = 75/509 (14%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-- 103
           D   +S        ++ D     V +++   +++ K   G+ +  +      ++A     
Sbjct: 361 DLVRES---QAFKNWIEDPHAKKVLYDAKRSQVILK---GLGMDLEGVSDDVLIASYLIH 414

Query: 104 --GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              L   + N     N   +L    E      +       +  YD   A       L   
Sbjct: 415 ARDLSGDVANVAREFNLD-YLAYDSEVYGKGKKVAVPEDKTRLYDHLVAKVSVINDLLPI 473

Query: 162 YCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              R + +   EL++++      E  L  +   +   G  +D   ++ L +   ++  +L
Sbjct: 474 IKDRLEADEMVELYRKI------ELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQL 527

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL----AKD 276
            E+I +       +   T  L   LF   G+     ++       + S + +L      D
Sbjct: 528 QEEIYREAGVEF-NINSTQQLSKVLFEDMGLKGGKKTKSG-NYSTAQSELEKLQGVPIID 585

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           LIL     +      +  + + +  DG++         + TGR S      QN+P +   
Sbjct: 586 LILAYRQLAKLQSTYVQGILDYIHQDGKVHSRF-IQTLTTTGRLSSADPNLQNIPIRT-- 642

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGE 395
                                      +R   + S     +  +D + IE RVLA ++G+
Sbjct: 643 ----------------------EEGRKIRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGD 680

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
               +AF   +DI+  T AK F+     +SK++R   K +   + Y     G ++     
Sbjct: 681 PHLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVNFGIVYGISDYGLSQNLSIS 740

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYP 490
                  + ++ +     + + D                         ++ +  ++    
Sbjct: 741 RQEAKAFIDKYFEIYPKVAEYMDKSVEIAREAGYAKTLFNRRRYLPDLKAKNYNVRSFAE 800

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             A+   + GTA +++K A     Q + +
Sbjct: 801 RTAMNSPIQGTAADIIKVAMVEMDQALKE 829



 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++       +   +   V     + V I   +       + +    YL    ++    
Sbjct: 739 ISRQEAKAFIDKYFEIYPKVAEYMDKSVEIAREAGYAKTLFNRR---RYLPDLKAKNYNV 795

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
           R++  +   N  +Q  + DI+   M    +         +++L VHDE++ E        
Sbjct: 796 RSFAERTAMNSPIQGTAADIIKVAMVEMDQALKEHQLQANLLLQVHDELIFEVAKEDLED 855

Query: 644 VGTLCS 649
           +  L  
Sbjct: 856 LAALVK 861


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/684 (17%), Positives = 213/684 (31%), Gaps = 148/684 (21%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-------EQSAMPS 55
           D ET         L  +G            C +  D   +             E++ +  
Sbjct: 385 DTETTGLDPREVDLVGIG------------CCWGRDPGNIAYIPIAHHNGNQLEKTQIFQ 432

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L  E    V  N+ F+R +F       I     +  ++LA    L   +K+    
Sbjct: 433 ALKPILETEKYPKVFQNAKFDRAIFAHQ---GISLAGVVFDTMLASYV-LHPEMKHNLTD 488

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L+           + L     K   D           ++   +  EYC  DV  T  + +
Sbjct: 489 LSL----------RYLGNIIAKSYKDLGLTKKQTIADLEI-SVAAEYCGLDVYTTYLVCQ 537

Query: 176 RL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +L       P     L   E  L  +   + + G RID D + +L E +  +   L+   
Sbjct: 538 KLKVELKDYPDLEKLLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKA 597

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
               D    +      L   LF   G++     +       +H+ + +L  D  +     
Sbjct: 598 YNAADERF-NLNSPKQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYIL 656

Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L   VS    R+         + TGR S      QN+P +     
Sbjct: 657 EYRTLAKLKSTYIDALPTLVSPKTDRIHTDFN-QTLTSTGRLSSSNPNLQNIPVRT---- 711

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                 S  +R   I      LV AD + IE R+L  ++ E   
Sbjct: 712 --------------------EFSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPIL 751

Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           ++A+  GED++  T    F+      V+  +R IGK++   + Y  GA+ F   A   G+
Sbjct: 752 LQAYQAGEDVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGAQRF---AREAGV 808

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
             ++    +                             D+      ++ +     K Q +
Sbjct: 809 SKEEGRAFI-----------------------------DRYHERYAKVFEYLELVKKQAI 839

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            Q       G+   + +      R    +   ++     D   +   S    Y+D     
Sbjct: 840 AQ-------GYVSTILQRR----RNFDFISNCLIELKGSDPKAIDLDSLDYAYNDA---- 884

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIV 633
                   QL+R            +Q  S DI+   M    +    Y   ++L VHDE+V
Sbjct: 885 --------QLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELV 930

Query: 634 SETPDTPYFSV-GTLCSLMTKNPS 656
            E P   +  +   + + M +   
Sbjct: 931 FEMPPEEWEELGSKIKTTMEQAVP 954


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 100/581 (17%), Positives = 189/581 (32%), Gaps = 106/581 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSD--- 56
            K+ +D+ET S  P              I   + A D+            A  +P +   
Sbjct: 325 KKIALDLETTSLDPFEG----------KIVGISIAVDEGKAFYIPIAHVGAKNIPIESVK 374

Query: 57  -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             L+ L +       HN  F+     + LGI+     +  + + A     P+  K     
Sbjct: 375 KFLRDLFNSGKTVGGHNIKFDLKFISR-LGIEPQIPSF-DSMIEAYLLN-PNEKKFNLDE 431

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L+      KM   + L+       + +  +     +    +         D + +  +  
Sbjct: 432 LSLKLLGHKMISYEDLVK--DTIPLFAGDFSYIPVDTAVKYS------CEDADMSLRIHN 483

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L PL             E  + L+   +   G   D+  +  L + + ++   L   I 
Sbjct: 484 LLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALSNRIF 543

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           ++T     +      L   LF    +  V  +  T         +  LA +  + +L   
Sbjct: 544 EITGEAF-NLNSPKQLGYILFEKLKLPSVKST-STGAYSTDVEVLEYLANEYEIAKLILE 601

Query: 286 GSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              I KL     + +   V+ +  R+  +    G + TGR S      QNLP +      
Sbjct: 602 YRKIQKLKSTYVDAIPNMVNKNTKRVHASFNQTG-TATGRLSSSDPNLQNLPGRS----- 655

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R  +    +G  ++ AD + IE RVLA I  +   
Sbjct: 656 -------------------DEGKEIRMAVKPQKDGWYILGADYSQIELRVLAHITEDPNL 696

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I AF   +DI++ T  K F    + +++  R IGK++  A+ Y     G AK        
Sbjct: 697 INAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVYGVSPYGLAKRTGLDVKD 756

Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493
               ++ +    K+   +                      D  Q  S    ++ +    A
Sbjct: 757 TKKMIEAYLDYYKNVQEYMANIKEFAKKNGYVRTMFGRKRDIPQINSKDQNIRAEGERIA 816

Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
           +   + G+A +++K A           + +   +LQ+  +L
Sbjct: 817 INTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHDEL 857


>gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11]
 gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46]
          Length = 876

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 113/649 (17%), Positives = 200/649 (30%), Gaps = 144/649 (22%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNG 104
             +   L  +L   +      N+ ++R++  +       + +D     ++  +    +  
Sbjct: 448 EVVLEQLAPWLSSPSHPKALQNAKYDRLILLRHGLVLGGVVMDTLLADYLRDAAAKHSLD 507

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +          FS+ + K ++GKA             P D               YC 
Sbjct: 508 GMAERDYGITPTLFSDLVGKAKDGKA-------SCFAEVPSD-----------QAALYCA 549

Query: 165 RDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            DV  TR L            ++L  L D  E  L  +   +   G RIDL  +  L + 
Sbjct: 550 MDVHLTRRLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKE 609

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           + +   +L+ D  +        +     L   LF   G+D               + + +
Sbjct: 610 MGETLTRLEADAKQAAGVDFNLA-SPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDK 668

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           LA D  +  L      + KL     + L + V +  GR+         + TGR S     
Sbjct: 669 LADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPN 727

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                           S  +R   +      L+ AD + IE 
Sbjct: 728 LQNIPVRT------------------------EYSRRIRKAFLPQEHWTLLSADYSQIEL 763

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+ +G+D++  T         D VS ++R +GK +   + Y  GA+
Sbjct: 764 RILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGMGAQ 821

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                        FA +  +  T  +  
Sbjct: 822 --------------------------------------------RFARETGVSQTDAKEF 837

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +R ++  V    +               +  RR  +  R  +              R
Sbjct: 838 LSKYRERYPKVFAFLELQERLALSRGYVETIMGRRRPFHFDRNGL-------------GR 884

Query: 567 RLVYS--DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            L     ++  D +      +Q +R            +Q  S DI+   M          
Sbjct: 885 LLGKDPFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQH 938

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666
                ++L VHDE+V E   +    V  L  S M K       +PL AE
Sbjct: 939 SLPARLLLQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAE 985


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 125/365 (34%), Gaps = 54/365 (14%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L      +   G R++ + +    E +  +  +L+++I         +      L 
Sbjct: 473 IEMPLLFTLFAMEQAGVRVEAEALRFYGEQLGTKIVELEKEIYAQAGEAF-NINSPKQLG 531

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           + LF    +     ++    T   +L          + IL     +       + L+  +
Sbjct: 532 VILFEKLKLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYI 591

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
            +DGR+ G       + TGR S      QN+P                            
Sbjct: 592 CADGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VRME 626

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   I   G   V AD + IE R+LA  +G+   I A+   +DI+  T ++ F+T
Sbjct: 627 LGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHT 686

Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           P D+V++ QR   K +   + Y     G ++            + ++ +       F D 
Sbjct: 687 PFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLDD 746

Query: 476 EQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAWRAKH 514
             A +  +                    +MQ  +    A+   + GTA +++K A    H
Sbjct: 747 TVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGVH 806

Query: 515 QGVLQ 519
           + + +
Sbjct: 807 RELTE 811


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 127/371 (34%), Gaps = 63/371 (16%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           EL++ L      E  L  +   +  RG  ID          +      L   + +     
Sbjct: 514 ELYESL------ELPLTPILADMERRGIAIDAAAFESFLSDVQGRLDTLTAAVYEAAGRE 567

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI-----LNRLASSG 286
             + R    L   LF    +     ++G  ++  S   + +LA         L       
Sbjct: 568 F-NIRSAQQLGDVLFSTLELPSPRKTKGG-QASTSQDTLEKLAGRHPVVDSVLEFRKLEK 625

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                L+ L   +  +GR+  T     A+ TGR S      QN+P               
Sbjct: 626 MRSTYLDPLPRLMDGNGRIHTTFN-QKATATGRLSSSNPNLQNIP--------------- 669

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                      G     +R+C IA+ G  LV AD + +E RVLA ++ +   ++AF NGE
Sbjct: 670 ---------VRGDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGE 720

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQF 462
           DI+  T A  ++   D+VS +QR   K +   L Y  GA+      K   S     + ++
Sbjct: 721 DIHARTAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGAQKLGQDLKISTSEAKEFIARY 780

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGT 501
              +     F D  +A +                                 A+   + G+
Sbjct: 781 FSRLTGLKEFYDSVEATAKRQGYVTTLGGRRRLLPDIHSPNGQAYALARRQAINTVIQGS 840

Query: 502 ACELVKKAWRA 512
           A +++K A  A
Sbjct: 841 AADIIKLAMLA 851



 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 598 TENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650
              ++Q  + DI+   M          ++   ++L VHDE++ E P+    +    +  L
Sbjct: 833 INTVIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLLEVPEASARAAGARVADL 892

Query: 651 MTKNPS 656
           M+    
Sbjct: 893 MSSVKP 898


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/514 (17%), Positives = 175/514 (34%), Gaps = 66/514 (12%)

Query: 28  AVITLCAYAW-DDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
             +TL   A   D+ V   D       + + L  + R E      +N   +    K   G
Sbjct: 324 PSLTLMGVALASDDDVYYVDIEHALDDVLTPLQYFFRREDTTFYGYNIKRDNHALKNA-G 382

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I + +        +A    L   L N    +++   L       +      +    S P 
Sbjct: 383 IHVHN--------IALDLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQLSLPI 434

Query: 146 DCTRANHVQAWQLFGEYC---KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             + AN  Q +  F  +    K+ +    ++        + E  L  +  TI   G  +D
Sbjct: 435 AKSPANPAQYFGGFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLD 494

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           ++ + +L+ ++++E   L +DI  L      + +    L   L+   G+  +D +  T  
Sbjct: 495 VEDLQELERILSEELAMLTDDIYTLAGAPF-NIKSPKQLSEVLYNKLGLKPIDKARSTKA 553

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
            +L   +      + IL   A        +  L   V     R+  T    G + TGR +
Sbjct: 554 EVLEALSGEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQMG-TVTGRLA 612

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVAD 380
                 QN+P +                              +R            + AD
Sbjct: 613 CQDPNLQNIPIRSER------------------------GRLLRKAFCNTHQNNYFLSAD 648

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R LA ++ ++    AF + EDI+  T ++ F+ P+++V+K+QR   K +   + 
Sbjct: 649 YSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII 708

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------- 480
           Y     G +K+ K   S     +  +       + F +   +++                
Sbjct: 709 YGQQAYGLSKILKISVSEAQKLIDAYFDRYPEVARFINETVSQACENLRVKTLLGRERII 768

Query: 481 ----HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                    +      AV  ++ G+A EL+K A 
Sbjct: 769 DNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 125/365 (34%), Gaps = 54/365 (14%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L      +   G R++ + +    E +  +  +L+++I         +      L 
Sbjct: 473 IEMPLLFTLFAMEQAGVRVEAEALRLYGEQLGTKIVELEKEIYAQAGEAF-NINSPKQLG 531

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           + LF    +     ++    T   +L          + IL     +       + L+  +
Sbjct: 532 VILFEKLRLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYI 591

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
            +DGR+ G       + TGR S      QN+P                            
Sbjct: 592 CADGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VRME 626

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   I   G   V AD + IE R+LA  +G+   I A+   +DI+  T ++ F+T
Sbjct: 627 LGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHT 686

Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           P D+V++ QR   K +   + Y     G ++            + ++ +       F D 
Sbjct: 687 PFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLDD 746

Query: 476 EQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAWRAKH 514
             A +  +                    +MQ  +    A+   + GTA +++K A    H
Sbjct: 747 TVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGVH 806

Query: 515 QGVLQ 519
           + + +
Sbjct: 807 RELTE 811


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/527 (16%), Positives = 176/527 (33%), Gaps = 88/527 (16%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103
            D  ++      L   L+ ++V     N+   +I+    LGI +  +      +LA    
Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAK-AQIVGLHRLGIPL--ENINFDLLLASYLL 410

Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLF 159
                 + L        +   +   EE       + KG+  + P D  T  +H+      
Sbjct: 411 NTNDNSNDLGQVAQEHGYD-DVRTDEEV------YGKGAKRAVPDDDETFFSHLATKARA 463

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            E  ++D+ A  +  K+    +D E  L  +   +   G  +D   +  +   + +   +
Sbjct: 464 IEQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSE 523

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           ++  I +       +   T  L   LF    + ++  ++    + +    + +LA    +
Sbjct: 524 IESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVD--VLEKLADKSPI 580

Query: 280 NRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                    I KL +     L + + S+ +   T      ++TGR S      QN+P   
Sbjct: 581 VEQILEYRQIAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP--- 637

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393
                                        +R   + S  G ++  +D + +E RVLA I 
Sbjct: 638 ---------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHIT 676

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVF 448
           G+    + F NGEDI+ +T  + F+   D ++ +  R   K +   + Y     G A+  
Sbjct: 677 GDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDYGLAQRI 736

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QD 487
               +     +Q +         + +   A +                          + 
Sbjct: 737 HVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYLPDIHAKSFNKRS 796

Query: 488 QYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
                A+   + G+A +++K A             K + +LQ+  +L
Sbjct: 797 FAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHDEL 843



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M        K      ++L +HDE+V E P      +  L 
Sbjct: 807 IQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHDELVFEAPKEEIPVLSELV 859


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/555 (15%), Positives = 165/555 (29%), Gaps = 105/555 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSD----LL 58
            +D ET S                   L   +   +P +        +   P      L 
Sbjct: 380 ALDTETTS------------LNTFEAELVGISISVKPQEAVFIYCSPEGLKPEKALSILK 427

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  +     N  ++ ++ K   GI +    +  T + +       +     LA   
Sbjct: 428 PVLENPAIEKWGQNLKYDILVLKNY-GIQLAPTGF-DTMLASYVINPEETHNLDDLAQRH 485

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---- 174
            ++ T         +  C     + P            +    Y  +D +    L     
Sbjct: 486 LQYRT------TTYSELCGTGKKAVPLR------QVPLEALKNYACQDADIALRLQNTLE 533

Query: 175 KRLIPLSDGER-------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           K+L    + E         L  +   +  RG  +D   + K    +A     L E I   
Sbjct: 534 KQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIYA- 592

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T G   +      L   LF   G+     ++       +   + +LA    + +      
Sbjct: 593 TAGSTFNIDSPKQLGEILFTRLGLPAKKTTK--TGYSTNVQVLEELAMIHPIAQDILEYR 650

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL       L + ++   G+L  +   +  + TGR S      QN+P +        
Sbjct: 651 SLQKLRSTYIEALPKILNPATGKLHTSFNQH-ITATGRLSSSNPNLQNIPIRT------- 702

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIK 400
                                 +R   IAS  +  +  AD + IE R+ A ++G+   I+
Sbjct: 703 -----------------ELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIE 745

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF N EDI+  T    F+T  + V+ + R   K +   + Y     G +           
Sbjct: 746 AFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYGIQPYGLSMRLNISQKEAK 803

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +  +           D                          S +  ++      A+ 
Sbjct: 804 AIIDTYKSKYPGLFEALDALVRQAAENGFVTTLLGRRRYIAALNSRNGNIRKAAERAAMN 863

Query: 496 DKLIGTACELVKKAW 510
             + GTA +++K A 
Sbjct: 864 TPVQGTAADIIKYAM 878


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/492 (15%), Positives = 162/492 (32%), Gaps = 79/492 (16%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF E
Sbjct: 390 LPAATFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF-E 447

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +  R V+   E  + +            L + E+ L  +   +   G +++ + +  +Q 
Sbjct: 448 HLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEIAGIKVERETLQGMQA 507

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
              +  + L ++I  L      +      L   LF   G+ L    +       +   + 
Sbjct: 508 ENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLE 566

Query: 272 QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           +LA    +         I KL +     L EA+++DG++         ++TGR S     
Sbjct: 567 RLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPN 625

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385
            QN+P                                +R   +       L+ +D + IE
Sbjct: 626 LQNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIE 661

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ-- 442
            RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y   
Sbjct: 662 LRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGIS 721

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAE 479
             G A             +Q + +       + +                          
Sbjct: 722 DFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDIN 781

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQ 533
           S +  +++     A+   + G+A +++K A     + +       ++   + +     V 
Sbjct: 782 SRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVP 841

Query: 534 EGGSISARRVAN 545
                + R++  
Sbjct: 842 NDELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +      + +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++   +++ I +L
Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYEL 523

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G  +  AD + IE RVLA IA +D  I+AF
Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                     +    S +  ++      A+   
Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 798 IQGSAADIIKKAM 810



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A              KR +  ++  +++  Y         Y    TS+    R++  + 
Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
             N  +Q  + DI+ + M +             ++L VHDE++ E P      +  L   
Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852

Query: 650 LMTKNPS 656
           +M +   
Sbjct: 853 VMEQAVE 859


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 131/376 (34%), Gaps = 62/376 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            REL++      + E  L      + + G  +D + +L     + ++  ++ E I +   
Sbjct: 463 ERELYR------EIELPLVFTLHEMEESGILVDREALLSYGAELREKIGEIRERIYREAG 516

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH-SNITQLAKDLILNRLASS 285
               +      L   LF   G+     ++    T   +L   S   QLA D++  R  S 
Sbjct: 517 EEF-NLNSPQQLGQILFEKLGLPGGRKTKTGYSTAADVLEKLSEENQLASDILEYRTYSK 575

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            ++      L   +  DGR+ G       + TGR S      QN+P +            
Sbjct: 576 LNST-YAEGLLSWIREDGRIHGHFN-QMVTATGRISSTDPNLQNIPIRT----------- 622

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                              R   I   G   + AD + +E R+LA ++G++  I+A+ N 
Sbjct: 623 -------------EMGRRFRRVFIPKEGSIFIDADYSQVELRILAALSGDEKLIRAYQNA 669

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           +DI+  T ++ F+ P+ +V+ + R   K +   + Y     G ++            +++
Sbjct: 670 DDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVYGISAFGLSEGLSISRQEAKEYIER 729

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIG 500
           + +       F D E   +                                 A+   + G
Sbjct: 730 YFETYPGVKKFLDGEVELARKQGYVRTIFGRKRPVPDISSSNFARRSFGERVAMNSPIQG 789

Query: 501 TACELVKKAWRAKHQG 516
           +A +++KKA     + 
Sbjct: 790 SAADIMKKAMNEVSRA 805



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 11/130 (8%)

Query: 529 ACVVQEGGSISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSD-VKGDCSYLNTAT 584
           A  + EG SIS +            +   K+ +   +  +R+  Y   + G    +   +
Sbjct: 709 AFGLSEGLSISRQEAKEYIERYFETYPGVKKFLDGEVELARKQGYVRTIFGRKRPVPDIS 768

Query: 585 SQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
           S     R++G ++  N  +Q  + DI+ + M   ++          IVL VHDE++ ETP
Sbjct: 769 SSNFARRSFGERVAMNSPIQGSAADIMKKAMNEVSRALKAGAFRARIVLQVHDELLLETP 828

Query: 638 DTPYFSVGTL 647
           +     V  L
Sbjct: 829 EKEADQVEEL 838


>gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 876

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 91/573 (15%), Positives = 194/573 (33%), Gaps = 72/573 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+   + G+A +++K A     Q +    K+ T     ++Q    +    +  VP+ 
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +      V  ++ ++ +L    +K D SY  T
Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871


>gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
 gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
          Length = 1022

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 126/377 (33%), Gaps = 62/377 (16%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E++++L      +  L  +   +   G R+D +L+ ++   +A     L E I   +   
Sbjct: 618 EVYEQL------DLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYASSGHR 671

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +      L   LF    +              +   +  LA+   +  +      + K
Sbjct: 672 F-NINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYRQLQK 730

Query: 292 LNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           L +     L      +GR+  T    G + TGR S      QN+P +             
Sbjct: 731 LKSTYLDQLPSLTDVNGRIHTTFNQVG-TATGRLSSINPNLQNIPIRT------------ 777

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R+  IA+ G  L+ AD + IE R++A  + +   + A+  G+
Sbjct: 778 ------------AVGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLDAYRTGK 825

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T A+ F      + KE RA  K +   + Y     G A             ++++
Sbjct: 826 DIHTLTAAEVFEVDAATMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVAKAYIERY 885

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
               K  +TF +                         +S +   +      AV   L GT
Sbjct: 886 FDRYKGVATFIEQTLETVRRDQAVKTAFGRVRPIPDIQSRNPNQRGFAERTAVNTPLQGT 945

Query: 502 ACELVKKAWRAKHQGVL 518
           A +L+K A       + 
Sbjct: 946 AADLIKIAMLRIDAAIR 962


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 100/573 (17%), Positives = 193/573 (33%), Gaps = 91/573 (15%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           D   V   +  ++   P +LL+ L      E +    +N   +    +      I     
Sbjct: 344 DGNRVVYVELKQR---PEELLEILCKFFSREDLSFYGYNIKRDLHALRNA---GIVIYNV 397

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
            C   LA    +    + +  +L  S          A+ AR+ K              + 
Sbjct: 398 SCDLALAEHL-IHGGARTSFQSLLVSHGWA------AVAARYVKEWGHHALPLVQLPENP 450

Query: 154 QAW----QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           + +           K  +    +  +      + E  L  +  ++   G  +D   ++ L
Sbjct: 451 EKYFGELVALLPQIKESLLEELQKKQLTDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSL 510

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS--- 266
           +  + Q+   L E+I  L      + +    L   L+   GI  +D ++ T   +L    
Sbjct: 511 EHSLEQDLAILTEEIYTLAGEPF-NIKSPKQLANILYNKLGITPLDKAKSTRAEVLEALR 569

Query: 267 --HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
             H  I +L     L +L S+      +  L   V+    R+  T +  G + TGR +  
Sbjct: 570 EEHKIIEKLLMFRALEKLLSTY-----VKALPRQVAPQTQRIHATFEQMG-TATGRLACR 623

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLA 382
               QN+P++      L                        R    +       + AD +
Sbjct: 624 DPNLQNIPKRSSRGLSL------------------------REAFLVPCETVSFLAADYS 659

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA ++ ++  + AF  GEDI+  T ++ F+ P+D+V+K+QR   K +   + Y 
Sbjct: 660 QIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTVNFGIIYG 719

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------ 480
               G +K+ K   S     +Q + +     + F +   A +                  
Sbjct: 720 QQAYGLSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAASHDLKVTTMLGRERVIDN 779

Query: 481 --HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
              H  ++      AV  ++ G+A EL+K A     + +        +      +    I
Sbjct: 780 WDEHPGIRASSGRLAVNTRIQGSAAELIKCAMLEISKEI--------QDRKLQSRMLLQI 831

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +  VP   M+     V   + ++  L   
Sbjct: 832 HDELIFEVPDGEMQEMCALVQEKMEAAMTLTVP 864


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 99/611 (16%), Positives = 186/611 (30%), Gaps = 107/611 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQSAMPSDLLQ 59
            +D ET S       L  +G+    E     L       +  K   D+     + S L  
Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEENDD--LFYIPLGHQTKKETPDQLSIEDVFSKLRN 441

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---- 115
           ++ D        NS F+R +F       +  K     ++LA                   
Sbjct: 442 WIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSEISFRL 498

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             F     K   GK     F      S           +  ++F E   ++ +   +LF+
Sbjct: 499 FGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSKEKDELIKLFE 558

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 + E  L  +   +   G  ID+  + KL + +    + ++  + +L D     S
Sbjct: 559 ------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELADESFNLS 612

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
                L   LF    +D     +           + +L  +  + +       + KL   
Sbjct: 613 -SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLSKLLST 671

Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   ++   GR+        A+ TGR S      QN+P +                
Sbjct: 672 YIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT--------------- 715

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                      S  +R   +     KL+ AD + IE R+LA +A E+  I AF   +DI+
Sbjct: 716 ---------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIH 766

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQN 465
             T    F    +++S ++R +GK +   + Y  G K F              L ++ + 
Sbjct: 767 SLTARLIFEK--EEISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYKER 824

Query: 466 VKSTSTFEDWEQ---------------------------------------AESHHLWMQ 486
                 F + ++                                         +    M+
Sbjct: 825 YSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLLGKDPYEIDLQAARRAGME 884

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGG 536
            Q    A    + G++ +++K A    ++           +LQ+  +L         E  
Sbjct: 885 AQSLRAAANAPIQGSSADIIKIAMVQLNKKFTEMNVPAKMLLQVHDELLFEVEPDSLEIT 944

Query: 537 SISARRVANVP 547
           +   ++     
Sbjct: 945 TKLVKKTMEDC 955


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 102/577 (17%), Positives = 178/577 (30%), Gaps = 112/577 (19%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAM 53
             + ID ET +       L  V +      A      +     + ++P+++ DR E  A 
Sbjct: 358 RVVAIDTETSALDAMRADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQV-DRAEALAA 416

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-----TNGLPSS 108
              L   L  + V+ V  N  ++  +  +  GI +                    GL   
Sbjct: 417 LKPL---LESDAVLKVGQNIKYDLNILARQ-GIMVSPIDDTMVMSFCLDAGRSETGLAGH 472

Query: 109 LKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +     +      K +E    GK  I+       + P  D TR            Y  
Sbjct: 473 GMDELSERHLLHTTMKFKELCGTGKKAISF-----AEVPLADATR------------YAA 515

Query: 165 RDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T  L +   P   GE          R L  +   +   G ++D + +  L    A
Sbjct: 516 EDADVTWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERLSGLSTEFA 575

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
            +  +L+  I +              L   LF             T +     S +  LA
Sbjct: 576 AQIARLEGVIHEKCGMSFTI-GSPKQLGEVLFDKL-GYKGGKKGKTGQYSTDQSVLEGLA 633

Query: 275 KD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
                   L+L     S       + L  A++   GR+  +    GA +TGR S      
Sbjct: 634 AQGAEVATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTSYSLVGA-QTGRLSSNEPNL 692

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P +                              +R   +A  G  L+ AD + IE R
Sbjct: 693 QNIPIRT------------------------EIGRQIRDAFVAEPGNVLLAADYSQIELR 728

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443
           + A +A      +AFA GEDI+  T  + F T    V ++ R   K +  A+ Y     G
Sbjct: 729 LAAHMADVPALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAILYGISRWG 784

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
                   A      + ++ +       +                       + +  S +
Sbjct: 785 LGGRLGVSADEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLFGRKTWFPRISSKN 844

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              +      A+   + GT+ +++K+A       + +
Sbjct: 845 QAERQGSERAAINAPIQGTSADIIKRAMARMMPALTE 881


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/502 (16%), Positives = 166/502 (33%), Gaps = 74/502 (14%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+         LFE     K           +    +     L         A      
Sbjct: 366 EDKNKAVELFKLLFENEGISKVGYDVKVPCSILYKMGIRF---LKLEFDIKIAAYLIDSS 422

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            +   E K +I ++    I            V   +++ E  K+  EA  E  + L  + 
Sbjct: 423 RS-DYELKDIIRQYTGVEISEDDEKFFSKETVLFSKVYSELTKKIEEAHME--ELLYKV- 478

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L  +  ++   G+++D D +++ +     E  K+ ++I  L++    +      L
Sbjct: 479 --EQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLSEEEF-NINSPKQL 535

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          + I+     +      +  L   
Sbjct: 536 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQLTKLYSTYIEGLKAV 595

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  D ++  +      + TGR S      QN+P +                         
Sbjct: 596 IQEDDKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------ 630

Query: 359 LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +       ++ AD + IE RVLA IA ++  I AF N  DI+  T ++ F
Sbjct: 631 EMGKEIRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEVF 690

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             PID+V+  QR+  K +   + Y  G    AK  K       L +  + +       + 
Sbjct: 691 KVPIDEVTSAQRSNAKAVNFGIVYGIGDFSLAKNLKISRKEAKLYIDTYFERYPKVKLYM 750

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D                       + +S +  ++      A+   + G+A +++K A   
Sbjct: 751 DDIVKEAKVNSYVTTLMNRRRFIPEIKSSNKIVRSFGERLAMNTPIQGSAADIIKIAMVN 810

Query: 513 KHQG----------VLQLWKDL 524
            ++           +LQ+  +L
Sbjct: 811 VYRRLEENKLKSKLILQVHDEL 832


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/583 (14%), Positives = 183/583 (31%), Gaps = 105/583 (18%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58
                L     + Y E   I L +       YA   + V   D        +        
Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCK 375

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +    + +  + +++   R + +K   + I          LA     P   +    +L  
Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIEFDINLAAYLIDPVRKEYEISSLAS 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                 +         F +    +             +++  E  K      +++ + L 
Sbjct: 433 EYLFKNINR----EDEFLRIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            +   E+ L      +   G+++D D++L+L++    E +    +I  +++    +    
Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          D I      +      +  L
Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A+  DG++         + TGR S      QN+P +                      
Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T +
Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  PI++V+   R   K +   + Y  G    ++            +  + +   +  
Sbjct: 687 EVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                      ++ +S +  ++      A+   + G+A +++K A
Sbjct: 747 LYLENIVEEAIEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
               H+           +LQ+  +L         E      ++
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849


>gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00]
          Length = 876

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821


>gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635]
 gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635]
          Length = 876

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 139/392 (35%), Gaps = 60/392 (15%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D E  L      +   G + +   + +  + +  +   L++ I + T     +      
Sbjct: 199 TDIEMPLIYSLFHMEQVGIKAERVRLKEYGDRLKVQIAVLEQKIYEETGETF-NINSPKQ 257

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295
           L   LF    +     ++       +   + +LA D  + ++      + KLN+     L
Sbjct: 258 LGEVLFDHMKLPNGKKTKSG--YSTAADVLDKLAPDYPVVQMILDYRQLTKLNSTYAEGL 315

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           +  +  D R+ GT      + TGR S      QN+P                        
Sbjct: 316 AVYIGPDERIHGTFN-QTITATGRISSTEPNLQNIP------------------------ 350

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +  +G   + AD + IE RVLA ++G++  I A+ + EDI+  T ++
Sbjct: 351 VRMELGREIRKIFVPEDGYVFIDADYSQIELRVLAHMSGDERLIGAYRHAEDIHAITASE 410

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+TP+D+V+  QR   K +   + Y     G ++            + ++ +       
Sbjct: 411 VFHTPLDEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSISRKEATEYINKYFETYPGVKE 470

Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510
           F D   A++                       +MQ  +    A+   + GTA +++K A 
Sbjct: 471 FLDRLVADAKETGYAVSMFGRRRPVPELKSANFMQRSFGERVAMNSPIQGTAADIMKIAM 530

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
               + +    K L       V +   I  R+
Sbjct: 531 IRVDRALKA--KGLKSRIVLQVHDELLIETRK 560


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +      + +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++   +++ I +L
Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G  +  AD + IE RVLA IA +D  I+AF
Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                     +    S +  ++      A+   
Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 798 IQGSAADIIKKAM 810



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A              KR +  ++  +++  Y         Y    TS+    R++  + 
Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
             N  +Q  + DI+ + M +             ++L VHDE++ E P      +  L   
Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852

Query: 650 LMTKNPS 656
           +M +   
Sbjct: 853 VMEQAVE 859


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 167/555 (30%), Gaps = 66/555 (11%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLG 85
              I   A A         D T+        L   L D     V H         +    
Sbjct: 375 DGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVK---WALRALWA 431

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                      + +A     P         L       ++ E  A  A+       +   
Sbjct: 432 RGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQLTLDLEGTGDD 491

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
             T    +    L        ++A     + L  L + E  L  +   + D G   DL  
Sbjct: 492 QDTARRELALRALATVELALALDAELTRREGLDLLHNLELPLAEVLARMEDAGIAADLTY 551

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           +  L+   A   ++  ++  +L      +      L+  LF   G+      +    +  
Sbjct: 552 LRDLEAEFAAAVRQAVDEAHRLVGREF-NLGSPKQLQQILFDELGLPKTKRIKTGYTTDA 610

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
                     D  L  +        KL T    L + ++ DGR+  T      + TGR S
Sbjct: 611 DALAWLAAQTDNELPVILLRHRDQTKLRTTVEGLIKTIAEDGRIHTTF-HQTVTATGRLS 669

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                          A   +R   +   G + L+ AD
Sbjct: 670 SAEPNLQNIPVRT------------------------DAGRRIRRAFVVGEGYEQLLTAD 705

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ ++  I+AF +G D +    ++ F  P+D+V  E RA  K M   L 
Sbjct: 706 YSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAMNYGLA 765

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481
           Y     G A+          + ++++  +      + +     +                
Sbjct: 766 YGLSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEAVVVRARREGYTATILGRRRYL 825

Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFA 529
                 +   ++     A+   + G+A +++K A     + +       ++   + +   
Sbjct: 826 PDLNSDNRQRREMAERMALNAPIQGSAADIIKLAMLRVDRALRENGLASRMLLQVHDELV 885

Query: 530 CVVQEGGSISARRVA 544
             V  G   + R + 
Sbjct: 886 LEVAPGELDTVRELV 900



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 23/274 (8%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  A    I+         T   +   P  +    +   G+ +  A     G +  
Sbjct: 642 EGLIKTIAEDGRIHTTFHQTVTATGRLSSAEPNLQNIPVRTDAGRRIRRAFVVGEGYEQL 701

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +  +  E +      H  +  +     V D++ G A   +K 
Sbjct: 702 LT-ADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPV-DQVDGEARARIKA 759

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                + G+     D        +    +             +R +     +V+ + R  
Sbjct: 760 M----NYGLAYGLSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEA--VVVRARREG 813

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------G 621
             + + G   YL    S   + R    ++  N  +Q  + DI+   M    +        
Sbjct: 814 YTATILGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKLAMLRVDRALRENGLA 873

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
             ++L VHDE+V E       +V  L    M++ 
Sbjct: 874 SRMLLQVHDELVLEVAPGELDTVRELVVEHMSQA 907


>gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 876

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 78/503 (15%), Positives = 167/503 (33%), Gaps = 63/503 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRA 512
              A+   + G+A +++K A   
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVK 810


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +      + +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++   +++ I +L
Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G  +  AD + IE RVLA IA +D  I+AF
Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                     +    S +  ++      A+   
Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 798 IQGSAADIIKKAM 810



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A              KR +  ++  +++  Y         Y    TS+    R++  + 
Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
             N  +Q  + DI+ + M +             ++L VHDE++ E P      +  L   
Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852

Query: 650 LMTKNPS 656
           +M +   
Sbjct: 853 VMEQAVE 859


>gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
 gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
          Length = 876

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GENHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +      + +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++   +++ I +L
Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G  +  AD + IE RVLA IA +D  I+AF
Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                     +    S +  ++      A+   
Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 798 IQGSAADIIKKAM 810



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A              KR +  ++  +++  Y         Y    TS+    R++  + 
Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
             N  +Q  + DI+ + M +             ++L VHDE++ E P      +  L   
Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852

Query: 650 LMTKNPS 656
           +M +   
Sbjct: 853 VMEQAVE 859


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 192/618 (31%), Gaps = 142/618 (22%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L          N+ ++R++  +     +  +  +  ++LA    L  +     L +    
Sbjct: 453 LASNDHPKALQNAKYDRLILLRH---GLALEGVVMDTLLADY--LRDAAAKHGLEVMAER 507

Query: 121 HLTKMEEGKALI----ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF-- 174
                  G + +      F   +I +                   YC  DV  TR L   
Sbjct: 508 EFKITPTGFSELVGKGQTFADVAIPTA----------------SLYCGMDVHLTRRLAIR 551

Query: 175 ---------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                     +L+PL +  E+ L  +   +   G RIDL  + +L   +    +KL++  
Sbjct: 552 LRAQLENMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLKELSIELGNTLEKLEQQA 611

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +        +     L   LF   G++               + + +L  D  +  L  
Sbjct: 612 QEAAGVNFNLA-SPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVL 670

Query: 285 SGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL     + L + V S  GR+         + TGR S      QN+P +     
Sbjct: 671 EHRVLSKLRSTYVDALPQLVESETGRVHTDFN-QAVTATGRLSSSNPNLQNIPIRT---- 725

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                 S  +R   +     KL+ AD + IE R+L  ++GE+  
Sbjct: 726 --------------------EFSRRIRKAFLPQENWKLLSADYSQIELRILTHLSGEEVL 765

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            +AF NG+D++  T     +   D+VS+++R +GK +   + Y  GA+ F         +
Sbjct: 766 QEAFRNGDDVHALTARLLLDK--DEVSEDERRLGKTINFGVIYGMGAQRFSRSTGLSQAE 823

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
            + F    K         Q  +      +     A+    + T                 
Sbjct: 824 AKDFLSRYK---------QRYAKVFTFLELQERLALSKGYVETLL--------------- 859

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS--DVKGD 576
                                 RR  +  R  +              R L     D+  D
Sbjct: 860 --------------------GRRRPFHFDRNGL-------------GRLLGKDPMDIDLD 886

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYD--IVLTVHD 630
            +      +Q +R            +Q  S DI+   M    +  T       ++L VHD
Sbjct: 887 VARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQLTAADLPARLLLQVHD 940

Query: 631 EIVSETPDTPYFSVGTLC 648
           E+V E   T    V  L 
Sbjct: 941 ELVLEVDPTALEDVQQLV 958


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 105/631 (16%), Positives = 195/631 (30%), Gaps = 106/631 (16%)

Query: 3    KLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMP--- 54
                D ET S       L  VG+ ++A        AY          D  E  + +P   
Sbjct: 455  HFAFDTETTSEDQRKADL--VGL-SFAMAPGE---AYYIPVGHTTTVDGQEPGTQLPLSH 508

Query: 55   --SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
                L     D ++    HN+ ++  +    L   I  +     S+LA     P      
Sbjct: 509  VLVQLKPIFEDASIGKYMHNAKYDIAVM---LRYGIQVEGLSFDSMLAAYLIEPGRRGLG 565

Query: 113  CLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                 F      M     LI    K  S+   P                +Y   D + T 
Sbjct: 566  LKEQAFQRLSILMTPITELIGSGSKIISMAQVPIR-----------RAADYAGSDADMTL 614

Query: 172  EL----------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L             L      E  L  +   +   G  +D + + +  E + ++ +K +
Sbjct: 615  RLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQLRKAE 674

Query: 222  EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278
            + I         +      L   LF+   +     ++        ++ +      A D +
Sbjct: 675  QTIYDAVGHHF-NVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPAIDSL 733

Query: 279  LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L     S      ++ L   +    GR+  +     AS +GR S      QN+P +    
Sbjct: 734  LEYRQLSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIAS-SGRLSSSNPNLQNIPVRT--- 789

Query: 338  EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                      +R   IA     L+ AD + IE R+LA I  E  
Sbjct: 790  ---------------------ELGRQIRRAFIADPSYVLLTADYSQIELRILANITNEPR 828

Query: 398  KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAKVFKTMA-S 453
             ++AF  GEDI+  T A  F+ P+++V+++QR + K +  A+ Y     G      M   
Sbjct: 829  LVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVVYAVLYGQSAYGLSQVTGMRPG 888

Query: 454  HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEF 492
                 ++++ +   +   + +    ++      +                          
Sbjct: 889  DAADFIKRYHETFPNIKVYVESTLEQARRQGYVNTCFGRKRFIPDMRVLSHVERQALERE 948

Query: 493  AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            AV   + G+  +L+K A             K + +LQ+  +L         E      + 
Sbjct: 949  AVNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQVHDELVFEVPVEELERAKRIVKA 1008

Query: 543  VANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            V      ++   K  + + + S +    ++ 
Sbjct: 1009 VMEGIGALLVPQKVPIKVDMKSGKNWFAAEP 1039



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 602  VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCS 649
            +Q  + D++   M          G     +L VHDE+V E P         +  
Sbjct: 954  IQGSNADLIKVAMLRLQHAFLQNGMKTRMILQVHDELVFEVPVEELERAKRIVK 1007


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/524 (15%), Positives = 171/524 (32%), Gaps = 65/524 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    +  + +   +    +      +L+++L D+    + +++     +    LGI+I
Sbjct: 332 AILKFGFYTNHQ--HVVINADDVKNYKNLVRWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +  +    + +       S+ +    +  + ++  K       I  F KG     P + 
Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVGLYGQNYVKDN-----ITVFGKGKKHHIPEES 442

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+ +           +++  E + ++  L D E  L  +   + + G   D++ + 
Sbjct: 443 ILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++  I ++   L  +I +       +      L + LF    + ++  ++    T   +
Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          D IL     S      +  L + +S D R+        A +TGR S   
Sbjct: 562 LEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSVD 620

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P +                              +R      S    ++ AD + 
Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +   + Y  
Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G ++            +  +  +      +                           
Sbjct: 717 SDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            S +  ++      A+   + G+A +++K A     + + +   
Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820



 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M         TK    ++L VHDE++ E P +        +  +M + 
Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 85/542 (15%), Positives = 175/542 (32%), Gaps = 86/542 (15%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYLRDE--TVMCVAHNS 73
           VGV  +AE+  +   A A   E    V++               YL D+   V      +
Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGE--------YLADKLAQVAKQTQIA 374

Query: 74  LFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
            F   +  K + +    + W  T  + +A     P         +            + +
Sbjct: 375 AFHVKVLLKYVNV----ETWTQTFGAEVAAYLLNPLKTAYDYEDIGKEYLGQIFPGRQEV 430

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK----RLIPLSDGERDL 187
           + +  KG  D+          +  +  +     +       L +    R+    + E  L
Sbjct: 431 VGK--KGDKDALAEKPEEMKRLGCFMAYVALAVK-APLEEALREAGMERIF--QEIEMPL 485

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
                ++   G +++ + +    E +     +L++ I         +      L   LF 
Sbjct: 486 VFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQICGQAGEDF-NINSPKQLGAILFE 544

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD 302
              +     ++       +   + +LA    + R       + KL     + L+  +  D
Sbjct: 545 KMKLPGGKKTKTG--YSTAADVLDKLAPKHPIVRDILEYRQLTKLKSTYADGLAGYIGED 602

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  T      + TGR S      QN+P +                             
Sbjct: 603 GRIHSTF-HQTITATGRISSTEPNLQNIPIR------------------------MELGR 637

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+TP +
Sbjct: 638 LIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHTPFE 697

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---- 474
           +V+  QR   K +   + Y     G ++            ++++         F D    
Sbjct: 698 EVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAADYIERYFSTYPKIKGFLDGLVK 757

Query: 475 -----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              + +S +   +      A+   + GTA +++K A    +  +
Sbjct: 758 KGKEDGYVTTMFGRRRPIPELKSSNFMQRSFGERIAMNSPIQGTAADIIKIAMNRVYSRL 817

Query: 518 LQ 519
            Q
Sbjct: 818 RQ 819


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 172/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  ++  A + KG+  + P +   A H+       W L   + 
Sbjct: 407 VDDVAAAAKMKQY----EAVRSDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ E +A++ + +++ 
Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 517

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPILKKTKTGYSTSADVLEKLAPYHEIVENILH 576

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 577 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 629

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 630 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 672

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 673 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 732

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 733 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 792

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 793 NTPIQGSAADIIKKAMIDLN 812



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 744

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 745 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 804

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 805 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 847


>gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 876

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 91/573 (15%), Positives = 194/573 (33%), Gaps = 72/573 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V     
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVAFITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                 + +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKVFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+   + G+A +++K A     Q +    K+ T     ++Q    +    +  VP+ 
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +      V  ++ ++ +L    +K D SY  T
Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKVFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
 gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GENHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 KRTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAKRTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 172/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 351 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 408

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  ++  A + KG+  + P +   A H+       W L   + 
Sbjct: 409 VDDVAAAAKMKQY----EAVRSDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 464

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ E +A++ + +++ 
Sbjct: 465 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 519

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 520 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 578

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 579 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 631

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 632 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 674

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 675 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 734

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 735 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 794

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 795 NTPIQGSAADIIKKAMIDLN 814



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 746

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 747 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 806

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 807 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 849


>gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
          Length = 876

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 91/573 (15%), Positives = 193/573 (33%), Gaps = 72/573 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +      +L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNSKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+   + G+A +++K A     Q +    K+ T     ++Q    +    +  VP+ 
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +      V  ++ ++ +L    +K D SY  T
Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 166/493 (33%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +      + +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++   +++ I +L
Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G  +  AD + IE RVLA IA +D  I+AF
Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                          S +  ++      A+   
Sbjct: 738 IERYFASFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTP 797

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 798 IQGSAADIIKKAM 810



 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
           R++  ++  N  +Q  + DI+ + M +             ++L VHDE++ E P      
Sbjct: 786 RSFAERMAMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEE--- 842

Query: 644 VGTLCSLMTKNPSWAKGL--PLKAE 666
           +  LC L+ +    A  L  PLK +
Sbjct: 843 MERLCRLVPEVMEQAVELRVPLKVD 867


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 166/493 (33%), Gaps = 62/493 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            E +      + +L DET      ++    +  K   GI++         +LA     P+
Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                  A+     + + E  +   A + KG+  S P + T A H+          +R  
Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  ++   L   E+ L  +   +   G ++D   + ++   +A++   +++ I +L
Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYEL 523

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    + ++  ++    T   +L          + IL+    
Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L + V  D G++         ++TGR S      QN+P +          
Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G  +  AD + IE RVLA IA +D  I+AF
Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
               DI+  T    F+   ++V+   R   K +   + Y     G A+            
Sbjct: 678 RRDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737

Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497
           ++++  +      + +                          S +  ++      A+   
Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTP 797

Query: 498 LIGTACELVKKAW 510
           + G+A +++KKA 
Sbjct: 798 IQGSAADIIKKAM 810



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A              KR +  ++  +++  Y         YL   TS+    R++  + 
Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERT 792

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
             N  +Q  + DI+ + M +             ++L VHDE++ E P      +  L   
Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852

Query: 650 LMTKNPS 656
           +M +   
Sbjct: 853 VMEQAVE 859


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 81/503 (16%), Positives = 169/503 (33%), Gaps = 78/503 (15%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103
            D  +++     L   L+ ++V     N+   +I+    LGI +  +      +LA    
Sbjct: 358 VDLLKEAP----LKDLLQSDSVKKNVFNAK-AQIVGLHRLGIPL--ENINFDLLLASYLL 410

Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLF 159
                 + L        +   +   EE       + KG+  + P D  T  +H+      
Sbjct: 411 NTNDNSNDLGQVAQEHGYD-DVRTDEEV------YGKGAKRTVPDDDETFFSHLATKARA 463

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            E  ++D+ A  +  K+    +D E  L  +   +   G  +D   +  +   + +   +
Sbjct: 464 IEQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSE 523

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           ++  I +       +   T  L   LF    + ++  ++    + +    + +LA    +
Sbjct: 524 IESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVD--VLEKLADKSPI 580

Query: 280 NRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                    I KL +     L + + S+ +   T      ++TGR S      QN+P   
Sbjct: 581 VEQILEYRQIAKLQSTYIAGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP--- 637

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393
                                        +R   + S  G ++  +D + +E RVLA I 
Sbjct: 638 ---------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHIT 676

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVF 448
           G+    + F NGEDI+ +T  + F+   D ++ +  R   K +   + Y     G A+  
Sbjct: 677 GDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDYGLAQRI 736

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QD 487
               +     +Q +         + +   A +                          + 
Sbjct: 737 HVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYLPDIHAKSFSKRS 796

Query: 488 QYPEFAVKDKLIGTACELVKKAW 510
                A+   + G+A +++K A 
Sbjct: 797 FAERTAMNTPIQGSAADIIKIAM 819


>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus]
 gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20]
 gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131]
 gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 876

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 169/514 (32%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +      +L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNSKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 145/449 (32%), Gaps = 64/449 (14%)

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG+  + P      +H+          ++ +        +L  L + E+ L  +   +
Sbjct: 432 YGKGAKRALPEKAILLSHLARKVTVLVETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G +++ + +  +Q    +   +L ++I  L      +      L   LF   G+   
Sbjct: 492 EIAGIKVERETLQTMQTENEEVLARLTQEIYDLAGEEF-NINSPKQLGGILFEKLGLPTS 550

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
              +       +   + +LA    +         I K+ +     L + + +DG++    
Sbjct: 551 FTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRY 610

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P +                              +R   +
Sbjct: 611 -LQDLTQTGRLSSVDPNLQNIPIR------------------------LEQGRLIRKAFV 645

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+G++  I+AF +G DI+ +T  + F     + V+  
Sbjct: 646 PEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPN 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473
            R   K +   + Y     G A             +  + +       +           
Sbjct: 706 DRRNAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDK 765

Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV----- 517
                      +     S +  ++      A+   + G+A +++K A     Q +     
Sbjct: 766 GYVETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNF 825

Query: 518 -LQLWKDLTEGFACVVQEGGSISARRVAN 545
             ++   + +     V E    + + +  
Sbjct: 826 KTRMLLQVHDEIVLEVPENELTAIKTLVK 854


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/542 (17%), Positives = 187/542 (34%), Gaps = 87/542 (16%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I   A+++ ++ V   D  +      DL +    E      H    + ++     GI+ 
Sbjct: 17  EIKKIAFSFGEDTVY-IDVFQIE----DLKEIFEKEEFEFTTHEIK-DFLVKLSYKGIEC 70

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDS 142
            SK +I T+++A       S  +    L          +     +G+        G    
Sbjct: 71  KSK-YIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDIL 129

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y C+R  H+   +              ++ K L    + E  L  + + +   G+ +D
Sbjct: 130 ADYICSRCVHLFDLREKLMNFIE----EMDMKKLL---LEIEMPLVEVLKLMEVSGFTLD 182

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
            +++ +L + I     ++ + I K       +      L  +LF    + ++  ++    
Sbjct: 183 KEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEKLNLPVIKKTKTGYS 241

Query: 260 TLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L        +  D+I  R   +      ++     +  + R+    +    + TG
Sbjct: 242 TDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDENNRVHSNFK-QMVTATG 299

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P +E                             +R   I       +V
Sbjct: 300 RISSTEPNLQNIPIRE------------------------EFGRQIRRAFIPRTKDGYIV 335

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P++KV+ E R   K +  
Sbjct: 336 SADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF 395

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
            + Y     G ++  K         +  + +  K    + +                   
Sbjct: 396 GIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRR 455

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK 522
               +  S +   + Q    A+   + G+A +++K A             K Q +LQ+  
Sbjct: 456 RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHD 515

Query: 523 DL 524
           +L
Sbjct: 516 EL 517



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 17/200 (8%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523
            + S    +   +  +H    +     F   + + + TA E+ K         + +  K 
Sbjct: 333 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKA 392

Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR----DVHIVLPSSRRLVYSDVK 574
           +  G    + + G      IS +           R+K        IV  +      + + 
Sbjct: 393 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIM 452

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLT 627
               Y+    S+   +R+   +L  N  +Q  + DI+   M    ++         ++L 
Sbjct: 453 NRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQ 512

Query: 628 VHDEIVSETPDTPYFSVGTL 647
           VHDE+V +T       V  +
Sbjct: 513 VHDELVVDTYKDEVEIVKKI 532


>gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 876

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 169/514 (32%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +      +L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNSKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/492 (15%), Positives = 162/492 (32%), Gaps = 79/492 (16%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF E
Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF-E 447

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +  R V+   E  + +            L + E+ L  +   +   G +++ + +  +Q 
Sbjct: 448 HLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQT 507

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
              +  + L ++I  L      +      L   LF   G+ L    +       +   + 
Sbjct: 508 ENEKTLESLTQEIYDLAGQEF-NINSPKQLGTVLFEDMGLPLEYTKKTKTGYSTAVDVLE 566

Query: 272 QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           +LA    +         I KL +     L EA+++DG++         ++TGR S     
Sbjct: 567 RLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPN 625

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385
            QN+P                                +R   +       L+ +D + IE
Sbjct: 626 LQNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIE 661

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ-- 442
            RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y   
Sbjct: 662 LRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGIS 721

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAE 479
             G A             +Q + +       + +                          
Sbjct: 722 DFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDIN 781

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQ 533
           S +  +++     A+   + G+A +++K A     + +       ++   + +     V 
Sbjct: 782 SRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVP 841

Query: 534 EGGSISARRVAN 545
                + R++  
Sbjct: 842 NDELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 136/390 (34%), Gaps = 65/390 (16%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           + W    +  ++  E    L++ L      E  +  +   +  RG R+DLD + +    +
Sbjct: 471 RLWPRLHQQLQQ--EKLLRLYEDL------ELPVLRVLAAMETRGIRVDLDFLQRFGREV 522

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            +E   L+E+I ++        +    L   LF    +     ++G       +  +T L
Sbjct: 523 EKELASLEEEIHEMAGEPF-LIQSPPQLAAILFDRLQLPTQKKTKGRTAYSTDNEVLTAL 581

Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
           A    +     +   + KL     + L + V    GR+  T     A+ TGR S      
Sbjct: 582 ADYHPIAAKVIAYRTLGKLKATYVDGLCKQVHPASGRIHTTFVQSVAA-TGRLSSRDPNL 640

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                          G     +R   + S+G   +  D + IE R
Sbjct: 641 QNIP------------------------VRGELGAQLRQAFLPSSGYIFISGDYSQIELR 676

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444
           +LA  + +   ++AF  GED++  T A+ F    + VS+E R   KV+   + Y      
Sbjct: 677 LLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVINFGIIYGMSAFG 736

Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
            AK            + ++         + D                          S +
Sbjct: 737 LAKQLNVSQRLAQDFINRYFARHTGVKRYFDQALDTARQKGWVTTLLGRRRPIPHLHSSN 796

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
             ++ +    A+   L G+A +L+KKA  A
Sbjct: 797 RNLRQEAERSALNTPLQGSAADLIKKAMLA 826


>gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF  
Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTVLPTDDEVYGKGAKRALPEQEQLFEH 448

Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             +           ++       +L  L + E+ L  +   +   G +++ + +  +Q  
Sbjct: 449 LARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERENLQGMQAE 508

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             +  + L ++I  L      +      L   LF   G+ L    +       +   + +
Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    +         I KL +     L EA+++DG++         ++TGR S      
Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386
           QN+P                                +R   +       L+ +D + IE 
Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442
           RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y    
Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480
            G A             +Q + +       + +                          S
Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534
            +  +++     A+   + G+A +++K A     + +       ++   + +     V  
Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPA 842

Query: 535 GGSISARRVAN 545
               + R++  
Sbjct: 843 DELTAVRQLVK 853



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P     +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IKLA--VPLVAD 869


>gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P+  +   + LA+                         + +     + KG
Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          +  ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF   G+ L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA+++DG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             +Q + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V      + R++  
Sbjct: 829 LLQVHDEIVLEVPNDELTAVRKLVK 853



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 90/556 (16%), Positives = 170/556 (30%), Gaps = 100/556 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L  ++ D        NS F+R +F       +  K     ++LA              
Sbjct: 437 SKLRNWIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSE 493

Query: 115 A----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                  F   L K   GK     F      S           +  ++F E   ++ +  
Sbjct: 494 ISFRLFGFKPPLFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSKEKDEL 553

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +LF+      + E  L  +   +   G  ID+  + KL + +    + ++  + +L   
Sbjct: 554 IKLFE------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAGE 607

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S     L   LF    +D     +           + +L  +  + +       + 
Sbjct: 608 NFNLS-SPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLS 666

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   ++   GR+        A+ TGR S      QN+P +           
Sbjct: 667 KLLSTYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT---------- 715

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                           S  +R   +     KL+ AD + IE R+LA +A E+  I AF  
Sbjct: 716 --------------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHK 761

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQ 460
            +DI+  T    F    +++S E+R +GK +   + Y  G K F              L 
Sbjct: 762 NDDIHSLTARLIFEK--EEISSEERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLI 819

Query: 461 QFSQNVKSTSTFEDWEQ---------------------------------------AESH 481
           ++ +       F + ++                                         + 
Sbjct: 820 KYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSAR 879

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACV 531
              M+ Q    A    + G++ +++K A    ++           +LQ+  +L       
Sbjct: 880 RAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNIPAKMLLQVHDELLFEVEPD 939

Query: 532 VQEGGSISARRVANVP 547
             E  +   ++     
Sbjct: 940 SLEITTKLVKKTMEDC 955


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 134/397 (33%), Gaps = 69/397 (17%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E  K L      E  L  +   +  RG  +D   + +  + +  +     E I +    
Sbjct: 491 LEDDKSLELFETIEMGLLPVLAAMERRGLFVDPAKLAEQSKELGADIASRVERIHEAAGE 550

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNIT-QLAKDLILNRLA 283
              +      L   LF + G+    + +       T   +LS    T Q+  D++  R  
Sbjct: 551 TF-NLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTNAKVLSDLADTYQIVADVLEYRER 609

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +   +   L+ L   +  D R+  T     A+ TGR S      QN+P +          
Sbjct: 610 AKIKST-YLDALPALIRGDHRIHTTFNQTVAA-TGRLSSSDPNLQNIPTRS--------- 658

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR+     +G   +  D + IE R+LA ++G++  I AF 
Sbjct: 659 ---------------ELGHRVRTAFTVPSGHVFLACDYSQIELRLLAHLSGDEHLIAAFQ 703

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +G D +  T ++ F  P+++V+ E R+  K +   + Y     G A   K   +     +
Sbjct: 704 SGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGIVYGQQAYGLATSLKIPRAEAQDMI 763

Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498
            ++         + D     +                     H+  +       A+   +
Sbjct: 764 DRYFAAYPGVRAYLDESVRIAHEKGYAVTMYGRKRHIREFGQHNRQLIAFGERTAMNHPM 823

Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLT 525
            G+A +++K A     +           +LQ+  +L 
Sbjct: 824 QGSAADIIKIAMIRVEKRLRKEGCAAKLILQIHDELD 860


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 137/421 (32%), Gaps = 71/421 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D E  L      +   G  +DL  +  ++    +    L+++I  L      +     
Sbjct: 473 YEDLELPLAYTLARMERTGVAVDLQALDAMKTEFRERIGALEQEIYSLAGEEF-NLNSPK 531

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-----LNT 294
            L   LF   G+  +  ++           + +LA    +         ++K     L  
Sbjct: 532 QLGQILFDKLGLPALKKTKTG--YSTDAKVLEELAPHHEVVAKILKYRTLIKILTTYLEG 589

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           LS+ V+   GR+         + TGR S      QN+P +                    
Sbjct: 590 LSKLVNEQTGRIHTHFN-QTVTATGRLSSTEPNLQNIPIR-------------------- 628

Query: 354 ADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     VR   +    G  L+ AD + IE R+LA ++ +   I +F   EDI+  T
Sbjct: 629 ----LEEGRRVRRAFVPGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            A+ F    + V+ E R   K +   + Y     G ++  K         + ++ + +  
Sbjct: 685 AAEVFGVLPEDVTPELRDRAKAVNFGIVYGISDYGLSQQLKIPRQEAKEYISRYFERLPG 744

Query: 469 TSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              F                            + +   +      A+   + GTA +++K
Sbjct: 745 VRDFIHNVVEDAKKNGYVTTLLNRRRYLPDINAKNFNQRSFAERTAMNTPIQGTAADIIK 804

Query: 508 KAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            A             +Q+   + +     V+E        + NV RLV ++ +  + + +
Sbjct: 805 LAMLRVEEALAGMDDVQMVLQVHDDLVFEVKEES------LINVARLVKKQMESALELAV 858

Query: 563 P 563
           P
Sbjct: 859 P 859



 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 602 VQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M    +         +VL VHD++V E  +    +V  L    M
Sbjct: 795 IQGTAADIIKLAMLRVEEALAGMDDVQMVLQVHDDLVFEVKEESLINVARLVKKQM 850


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 139/402 (34%), Gaps = 68/402 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +  +G ++D  +   L   +  E +   + I  L      +      L
Sbjct: 454 DMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQL 512

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+    + +  + +G          + +LA+   L        ++ KL     +TL 
Sbjct: 513 AQVLYEKLQLPI--LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLP 570

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             V+ DGR+  T     A+ TGR S      QN+P +                       
Sbjct: 571 GLVAKDGRIHTTY-HQAATATGRLSSSDPNLQNIPVRT---------------------- 607

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +A  G +LV AD + +E R+LA IA +   + AF + EDI+  T A+ 
Sbjct: 608 --ELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEI 665

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST-ST 471
           F    DKV ++QR + K +   + Y     G +             ++++          
Sbjct: 666 FGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTRLSISVEEARDIIERYFTRYAGIRRY 725

Query: 472 FEDWEQAESHHLWMQDQYPE--------------------FAVKDKLIGTACELVKKAWR 511
            ED  +      +++  +                       A+   + GTA +L+KKA  
Sbjct: 726 LEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAERAAINMPIQGTAADLIKKAML 785

Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543
           A  +           +LQ+  +L         +     AR+ 
Sbjct: 786 AVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQC 827



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLCSL 650
           +Q  + D++ + M    +         V+   VHDE++ E P+     V  L   
Sbjct: 772 IQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQ 826


>gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 877

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 84/546 (15%), Positives = 182/546 (33%), Gaps = 77/546 (14%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           ID        + K G+  YA+   I + A     E +  +         ++L+++L ++ 
Sbjct: 324 IDGSNYLKDKILKFGL--YAQNQYIVISA-----EDIHQY---------TELIEWLENDH 367

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
              +  ++     +    L I++    +    + +       ++++    +++       
Sbjct: 368 NNKIVFDAKK-TYVAAHRLEINLQHIDF-DVMLASYIINPSRTIEDVQSVVSYYNQNF-- 423

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
              K+ IA + KG     P D     H+ A       CK  +        ++  L++ E 
Sbjct: 424 --VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQMDLLNNLEL 481

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   + + G   D++ + ++Q  + ++   L  +I +       +      L + L
Sbjct: 482 PLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESF-NINSPKQLGIVL 540

Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
           F    + ++  ++    T   +L          D IL     S      +  L + +S D
Sbjct: 541 FETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKLQSTYVEGLQKVISDD 600

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            R+        A +TGR S      QN+P +                             
Sbjct: 601 QRIHTRFNQTLA-QTGRLSSIDPNLQNIPIR------------------------LEEGR 635

Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R      S+   ++ AD + IE RVLA +  ++   +AF +G+DI+  T  K F    
Sbjct: 636 KIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEK 695

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---- 473
           D+V+   R   K +   + Y     G ++            +  +  +      +     
Sbjct: 696 DQVNDLMRRQAKAVNFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIV 755

Query: 474 -----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                  S +  ++      A+   + G+A +++K A     + 
Sbjct: 756 KDAKANGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKN 815

Query: 517 VLQLWK 522
           V +   
Sbjct: 816 VRETNY 821


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 129/382 (33%), Gaps = 65/382 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E+ L  +   +  RG  +D+  + +L E + +E   L+ +I +L      +      L
Sbjct: 447 EVEKPLAAVLAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLAGHPF-NVNSRDQL 505

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+   G+        T K   + S + ++     +         + KL     + L 
Sbjct: 506 EAILYDELGLQAGGKKTTTGKRSTAASVLEEMRSLHPIVGKILDYRELAKLKGTYLDPLP 565

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + +    GRL        A+ TGR S      QN+P +                      
Sbjct: 566 KLIHPKTGRLHTRFNQTVAA-TGRLSSSDPNLQNIPVRT--------------------- 603

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +A  G  LVVAD + IE R+LA ++G++   K F    DI+  T A 
Sbjct: 604 ---EVGRKIRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAW 660

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471
            F    +KV  + R   K +   + Y   A           +     ++++  +      
Sbjct: 661 MFGLEPEKVDPQHRRAAKTINFGVLYGMSAHRLSGELGISYAEASGFIERYFASYPKVRL 720

Query: 472 FEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAW 510
           + +   AE                          +++     A    + GTA +L+K A 
Sbjct: 721 WIEKTLAEGRERGYVETMFGRRRFVADLESKNRAIKEAAERMAFNMPVQGTAADLMKLAM 780

Query: 511 RAKHQG--------VLQLWKDL 524
              +          VLQ+  +L
Sbjct: 781 VKLYPKLKERGAHLVLQVHDEL 802



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
            +   L   R   Y +   G   ++    S+    +    ++  N+ VQ  + D++   M
Sbjct: 721 WIEKTLAEGRERGYVETMFGRRRFVADLESKNRAIKEAAERMAFNMPVQGTAADLMKLAM 780

Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663
                   + G  +VL VHDE+V E P+     V  + C +M     W   +PL
Sbjct: 781 VKLYPKLKERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQNV--WELDVPL 832


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 86/548 (15%), Positives = 174/548 (31%), Gaps = 87/548 (15%)

Query: 17  PKVGVWAYA--EQA---VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVA 70
            + G++  A  E      +   A A  D    +      Q    ++L ++L D       
Sbjct: 326 TEHGLYVEAIGENPHQAEVLGLAAAVGD-TAYVVPVAALQQPFTAELRKWLEDADKPK-- 382

Query: 71  HNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            N  F+    +  LG       W        LA        L      L  +    +  +
Sbjct: 383 -NG-FDTHKIELALG--WRGIEWHGAAFDVQLAAYL-----LDPTDTNLTLNALCDRYGQ 433

Query: 128 GKA--LIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATRELFKRLIPLSDG 183
                  A + KG+    P + T   H+ A    +         +  +     L    + 
Sbjct: 434 SSVPHDEAVYGKGAKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELY--FEL 491

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E+ L ++   +  +G +++   + +L   +  +      +I +L +    +      L  
Sbjct: 492 EQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLAEMEF-NIGSPKQLGE 550

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT------LSE 297
            LF   G+ +   ++           + +LA    +  L      + KL +      L E
Sbjct: 551 VLFEKLGLPVQKKTK--TGYSTDAEVLEKLAPYHEIVPLILHYRTLSKLQSTYIEGLLKE 608

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
                G++  T      + TGR S      QN+P +                        
Sbjct: 609 VRPETGKIH-TYYRQTIAATGRLSSQFPNLQNIPIR------------------------ 643

Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   + S  G  ++ AD + IE RVLA I+G++   +AF +  DI+  T    
Sbjct: 644 LEEGRQIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDV 703

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F    D+V    R   K +   + Y     G ++            ++Q+ +  +    +
Sbjct: 704 FGVSADQVDSNMRRSAKAVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFEVFQGVRKY 763

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D                         ++ +  ++      A+   + GTA +++K A  
Sbjct: 764 MDDIVMQARRDGFVTTLLERRRYLPDIKASNFNLRSFAERTAMNTPIQGTAADIIKLAMV 823

Query: 512 AKHQGVLQ 519
             ++ + +
Sbjct: 824 RMNETLRE 831



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 36/193 (18%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDL----------TEGFACVVQEGGSISAR 541
             + G + + V    R      + G++    D            E    + Q        
Sbjct: 701 MDVFGVSADQVDSNMRRSAKAVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFEVFQGV 760

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           R      ++  R    V  +L   R L         S  N         R++  +   N 
Sbjct: 761 RKYMDDIVMQARRDGFVTTLLERRRYL----PDIKASNFN--------LRSFAERTAMNT 808

Query: 602 -VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETP-DTPYFSVGTLCSLMTK 653
            +Q  + DI+   M        + G    ++L VHDE+V E P +        + S M  
Sbjct: 809 PIQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMKELVPSTMAG 868

Query: 654 NPSWAKGLPLKAE 666
             +    +PLKA+
Sbjct: 869 ALT--LDVPLKAD 879


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 119/677 (17%), Positives = 219/677 (32%), Gaps = 146/677 (21%)

Query: 7   DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDL--- 57
           D ET +       L  +G            C +    + V            +  DL   
Sbjct: 392 DTETTALEPRDADLVGIG------------CCWGMQPDEVAYIPLGHKTGENLHKDLVLE 439

Query: 58  --LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS------L 109
                L          N+ F+R++ K   GI++     +   +LA     P S      L
Sbjct: 440 GLRPILESADYPKALQNAKFDRLVLK-CQGINL--AGVVFDPMLASYILNPDSSHNLMDL 496

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDV 167
               L L    +L  + +GK +        I S    C     + A+  FG     + ++
Sbjct: 497 GQRYLGLIAKSYLDLVPKGKTIAD----IDIPSVADYC----GMDAYSTFGLVPKLREEL 548

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +    L K L+   + E+ L  +   +   G RI+   + +L + +  E  +L E+  K+
Sbjct: 549 DKIPTLSKLLV---EVEQPLEAVLAQMEYTGVRINSAYLKELSQHLETELARLKEEATKI 605

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-------LILN 280
                 +      L   LF   G+      +         + + +L +D        I+ 
Sbjct: 606 AGENF-NLGSPKQLSQILFEKLGLSTKHSRKIQTGFSTDAATLEKLQEDDKSGFVEAIIE 664

Query: 281 RLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S      ++ L   V  D  R+        A+ TGR S      QN+P +      
Sbjct: 665 YRTLSKLKSTYVDALPALVRPDTQRVHTDFN-QAATSTGRLSSSNPNLQNIPIRT----- 718

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                S  +R   +   G  +V AD + IE R+LA ++ E   +
Sbjct: 719 -------------------AFSRQIRKAFLPEAGWLMVAADYSQIELRILAHLSQEPILV 759

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +A+   ED++  T    F    +K++ E+R I K +   + Y  G+      +   G+D 
Sbjct: 760 QAYQQNEDVHTVTGRLVFEK--EKITSEERGIAKTINFGVIYGMGS---LRFSRSTGIDK 814

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              ++ +K  +  E + +  ++   ++ +       + ++G                   
Sbjct: 815 NIANEFIKRFN--ERYPKVFAYLEQVKKEAIALGYVETILGR------------------ 854

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                                RR  +     +RR K       P    L           
Sbjct: 855 ---------------------RRYFDFTNNSLRRLKGSN----PEDIDLS------KLKN 883

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSE 635
           L    + L+R            +Q  + DI+   M    +    Y   ++L VHDE+V E
Sbjct: 884 LGPYDAGLLRSAANAP------IQGSNADIIKIAMVRLHEVLKNYQARLLLQVHDELVFE 937

Query: 636 TPDTPYFSVG-TLCSLM 651
            P   +  +   + S+M
Sbjct: 938 IPPDEWEELQPQIKSVM 954


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 106/579 (18%), Positives = 196/579 (33%), Gaps = 100/579 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           +  D+ET S  P         A+   I L    ++   + L+   ++  +  +++  L +
Sbjct: 338 ISFDLETSSLDPYQ-------ADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVDLLNN 390

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLALNFSEH 121
           + V+    N  ++  + K      I   +    S++A     P S       LA  + ++
Sbjct: 391 KKVI--GQNLKYDITVLK---VNGIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLDY 445

Query: 122 LT-KMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            T K +E  GK  I     G ID                   EY   D +    LF+ L 
Sbjct: 446 KTIKYKEVMGKD-IKLLTLGDIDKKRV--------------VEYAGEDADIAYRLFEVLK 490

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           P              E     +   +   G   DL  + KL+E   ++   L  ++ K+ 
Sbjct: 491 PKLEEFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMKKIV 550

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      +   LF   G+     ++     T    L          + +L     
Sbjct: 551 GYDF-NPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYRKY 609

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  + + V+   GR+  +    G + TGR S      QNLP +E   E +  T
Sbjct: 610 QKLLSTYIIAIPKLVNKKTGRVHTSFNQTG-TATGRLSSSEPNLQNLPIREEDGERIRST 668

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
           ++A                         +   L+ AD + IE RVLA +  ++  I AF 
Sbjct: 669 VKAQK-----------------------DDYVLLSADYSQIELRVLAHLTNDETLINAFN 705

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           NGEDI+  T A  F   ID V    R +GKV+  +L Y     G A+  K         +
Sbjct: 706 NGEDIHALTAAAIFGVKIDDVDYNMRRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFM 765

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWM-----------------QDQYPEFAVKDKLIGTA 502
            ++ +  +    +++     +                      + +     +   + G+A
Sbjct: 766 NRYFKTYQKVKEYQESSLKIATQKGYVETIFGRKRFLKNIKTGKSELKRIVINTPIQGSA 825

Query: 503 CELVKKAWRAKHQG-------VLQLWKDLTEGFACVVQE 534
            +++K A    ++        +LQ+  ++       + E
Sbjct: 826 ADIMKLAMINLYKKLPKEAKLILQVHDEVVIELPEKIVE 864



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 9/119 (7%)

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
           E       R     + V    +  + I             K     + T  S+L R    
Sbjct: 759 EDAKDFMNRYFKTYQKVKEYQESSLKIATQKGYVETIFGRKRFLKNIKTGKSELKRIVIN 818

Query: 594 GGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                   +Q  + DI+   M N  K       ++L VHDE+V E P+        +  
Sbjct: 819 TP------IQGSAADIMKLAMINLYKKLPKEAKLILQVHDEVVIELPEKIVEETKKMVQ 871


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 107/598 (17%), Positives = 205/598 (34%), Gaps = 101/598 (16%)

Query: 5   FIDIETRSPQP--LPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ID+ET S  P     VGV    +         A+  D      W + ++  +  +L + 
Sbjct: 326 AIDLETSSLDPHCAKIVGVSISIDEGSGYYIPIAHESDG-----W-QADRDYVLKNLKKL 379

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D +   +  N  F+  +     GI      +   ++LA     P + +     L    
Sbjct: 380 LEDRSTKIIGQNLKFDYSVLA-VNGIHPVVPDF--DTMLAAYLLSPDAKRFNLDELAMKF 436

Query: 121 HLTKMEEGKALIAR------FCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEAT 170
              K  + + L+ +      F K  ++        D   +  + +      Y +   E  
Sbjct: 437 LGYKTIKFEDLMKKNQLGDDFTKVPLEEAARYSVEDADISLRLSSVLRKKIYEQELEEIF 496

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           R++   LIP+             +   G   D+  +  L E   +   K+ E++  LT  
Sbjct: 497 RKVELALIPVL----------ADLELNGVYFDVPSLKNLSEKYGKILDKILEELFDLTGE 546

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSG 286
              +      +   LF   G+     ++G    T    L        A   +L+      
Sbjct: 547 QF-NPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQKLLDYRKYQK 605

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                L++L E V+   GR+  +    G + TGR S      QNLP +            
Sbjct: 606 LKSTYLDSLPELVNKVTGRIHTSYHQTG-TGTGRLSSSNPNMQNLPIR------------ 652

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R C+I    G K+V AD + IE R+LA ++ +   + AF N
Sbjct: 653 ------------DEEGKEIRKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFKN 700

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            +D++  T +  +     +VS+EQR IGK++  ++ Y     G A   +   +     + 
Sbjct: 701 DKDVHSLTASNLYGIKESEVSEEQRRIGKMINFSIIYGISSYGLASRLRIPTNVAEEMIS 760

Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499
            + +       F                      +  Q ++ +  +  +    A+   + 
Sbjct: 761 NYFKAFPEVRAFIRDTISEAKEKCFVRTMFGRKREIPQFKTKNRNVIQEGERIAINTPIQ 820

Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLT-EGFACVVQEGGSISARRVANV 546
           GTA +++K A             +   +LQ+  ++  E     +++   I    ++ V
Sbjct: 821 GTAADIMKMAMIKIYNLLKEKEMESFAILQVHDEMVYEAPEKEIEKLKEILKEGMSEV 878


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 95/612 (15%), Positives = 183/612 (29%), Gaps = 109/612 (17%)

Query: 5   FIDIETRS----PQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            +D ET S       L  +G+      +        +    E            + S + 
Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQ---LSIEEVFSKIR 440

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA--- 115
            ++ D        NS F+R +F       +  K     ++LA                  
Sbjct: 441 TWIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSEISFR 497

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              F     K   GK     F      S           +  ++F E    + +   +LF
Sbjct: 498 LFGFKPPSFKETVGKNKDFSFVDIDEASVYCGYDVFLTFKIVKIFKERFSMEKDELIKLF 557

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +      + E  L  +   +   G  ID+  + KL + +    + ++  + +L +G    
Sbjct: 558 E------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEGNFNL 611

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
           S     L   LF    +D     +           + +L  +  + +       + KL  
Sbjct: 612 S-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQYLIKHRTLSKLLS 670

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L   ++   GR+        A+ TGR S      QN+P +               
Sbjct: 671 TYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT-------------- 715

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                       S  +R   +     KL+ AD + IE R+LA +A E+  I AF   +DI
Sbjct: 716 ----------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDI 765

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQ 464
           +  T    F    +++S ++R +GK +   + Y  G K F              L ++ +
Sbjct: 766 HSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYKE 823

Query: 465 NVKSTSTFEDWEQ---------------------------------------AESHHLWM 485
                  F + ++                                         +    M
Sbjct: 824 RYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGM 883

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535
           + Q    A    + G++ +++K A    ++           +LQ+  +L         E 
Sbjct: 884 EAQSLRAAANAPIQGSSADIIKIAMVQINKKFIEMNVPAKMLLQVHDELLFEVEPDSLEI 943

Query: 536 GSISARRVANVP 547
            +   ++     
Sbjct: 944 TTKLVKKTMEDC 955


>gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 73/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P+  +   + LA+                         + +     + KG
Sbjct: 381 VLLSHYGIELPAAAF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          +  ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF   G+ L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA+++DG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             ++ + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V      + R++  
Sbjct: 829 LLQVHDEIVLEVPADELTAVRQLVK 853



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P     +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IKLA--VPLVAD 869


>gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
 gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
          Length = 877

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 179/529 (33%), Gaps = 89/529 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   +L+   ++T + V ++    ++L  + LG+++ +  
Sbjct: 337 FAWSCGD---KLYTTDKLELLQEPILKEFLEKTPLKV-YDFKKAKVLLNR-LGLNLQAPA 391

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               N       +++       + KG   + P        
Sbjct: 392 Y--DSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPER------ 439

Query: 153 VQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202
               + F E+  R V    E    L ++L        L D E+ L  +   +   G ++ 
Sbjct: 440 ----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 495

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +L++Q       ++L ++I +L      +      L + LF   G+ L    +    
Sbjct: 496 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA    + +       I K+ +     L + +  DG++         ++T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQT 613

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 709

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G +             +  + +       + D                 
Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                    S +  ++      A+   + G+A +++K A     + +++
Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 818


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 86/540 (15%), Positives = 173/540 (32%), Gaps = 89/540 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +  V+ +  N  F   L K+    +I     I   +L         L       N   
Sbjct: 424 LENPAVVKIGQNMKFNYSLLKRH---NINLSGKIFDVILEFYI-----LYGTTNYQNIKR 475

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
            L K      L  +    + ++      +  + ++      Y  + + A  +L + L P 
Sbjct: 476 FLNKETFNSILNFQQSYDNYNNYIVKEIKNIYQESL-----YAIQLILAIFDLHQILWPQ 530

Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  L  +   I   G  ID  L+      +      L     +L  
Sbjct: 531 LYSNDKLKKIFQEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLAG 590

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L+  L+    + ++  +     S  +   + +L+    + ++     ++
Sbjct: 591 TSF-NLDSIKQLQEILYKKQKLPILKKTPSGSPST-NEEVLKKLSHKYPIPKIILKYRSL 648

Query: 290 LKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            KL     N L   V+++  R+  +      + TGR S      QN+P +          
Sbjct: 649 SKLKSTYTNKLISMVNTESNRIHTSYN-QTRTATGRLSSANPNLQNIPNR---------- 697

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +   +V AD + IE R++A ++ +   I  F 
Sbjct: 698 --------------NHDGRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFL 743

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDL 459
           +G+DI+ TT ++ F T ++ V+ EQR   K +   L Y   A       S         +
Sbjct: 744 SGKDIHTTTASEIFVTSLNLVTNEQRHQAKTINFGLIYGMSAFGLSKQLSVTCYEAQKYV 803

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
            ++ Q       +                            S +L  +      A+   +
Sbjct: 804 DRYFQRYPGVMQYIQHIKDNVYKYGYVSTLEGRKLYLPNIYSKNLSKKKGAERAAINAPM 863

Query: 499 IGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551
            G+A +++KKA      W  +    +Q+   + +     VQ      + +++  +     
Sbjct: 864 QGSAADIIKKAMISINYWLKQDDIPVQMIMQVHDELVFEVQNNFIDTAIKQIKKLMEECF 923


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 78/497 (15%), Positives = 164/497 (32%), Gaps = 73/497 (14%)

Query: 53  MPSDLLQY-------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           +P+D+          L DE       ++    +  K   GI++    +    +LA     
Sbjct: 345 IPTDIALASSRFKRWLEDEQCKKSVFDAKRAIVALK-WNGIELKGVDF--DLLLAAYLLN 401

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P+           ++     +          KG+  + P     A H+          K 
Sbjct: 402 PT--DANGDVAAVAKTKQYTDVQSDEEVY-GKGAKQAIPPTNVLAEHLVRKAKAIASLKE 458

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                 +  ++   L   E  L  +   +   G ++D+D + ++ +    + +++++ I 
Sbjct: 459 TYIQELKRNEQFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFTAQLEQIEQRIY 518

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +L      +      L   LF    + +V  ++       S   + +LA    +      
Sbjct: 519 ELAGTTF-NINSPKQLGTILFEKLQLPIVKKTKTG--YSTSADVLEKLAPYHEIIEQILH 575

Query: 286 GSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL +     L + V  D G++    Q    ++TGR S      QN+P +      
Sbjct: 576 YRQLGKLQSTYVEGLMKVVRKDTGKVHTIFQ-QALTQTGRLSSTEPNLQNIPIR------ 628

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   + S +   +  AD + IE RVLA IA ++  
Sbjct: 629 ------------------IEEGRKIRQAFVPSSDDWVIFAADYSQIELRVLAHIANDENL 670

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I AF +  DI+  T    F+   D+V+   R   K +   + Y     G ++        
Sbjct: 671 IAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 730

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               ++++ ++      + +                          S +  ++      A
Sbjct: 731 AAEFIERYFRSYPGVKRYMEEVVQDAKQKGYVTTLLHRRRYLPDITSGNFNVRSFAERTA 790

Query: 494 VKDKLIGTACELVKKAW 510
           +   + G+A +++KKA 
Sbjct: 791 MNTPIQGSAADIIKKAM 807


>gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
          Length = 877

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/546 (15%), Positives = 182/546 (33%), Gaps = 77/546 (14%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           ID        + K G+  YA+   I + A     E +  +         ++L+++L ++ 
Sbjct: 324 IDGSNYLKDKILKFGL--YAQNQYIVISA-----EDIHQY---------TELIEWLENDH 367

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
              +  ++     +    L I++    +    + +       ++++    +++       
Sbjct: 368 NNKIVFDAKK-TYVAAHRLEINLQHIDF-DVMLASYIIDPSRTIEDVQSVVSYYNQNF-- 423

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
              K+ IA + KG     P D     H+ A       CK  +        ++  L++ E 
Sbjct: 424 --VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQMDLLNNLEL 481

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   + + G   D++ + ++Q  + ++   L  +I +       +      L + L
Sbjct: 482 PLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESF-NINSPKQLGIVL 540

Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
           F    + ++  ++    T   +L          D IL     S      +  L + +S D
Sbjct: 541 FETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKLQSTYVEGLQKVISDD 600

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            R+        A +TGR S      QN+P +                             
Sbjct: 601 QRIHTRFNQTLA-QTGRLSSIDPNLQNIPIR------------------------LEEGR 635

Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R      S+   ++ AD + IE RVLA +  ++   +AF +G+DI+  T  K F    
Sbjct: 636 KIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEK 695

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---- 473
           D+V+   R   K +   + Y     G ++            +  +  +      +     
Sbjct: 696 DQVNDLMRRQAKAVNFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIV 755

Query: 474 -----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                  S +  ++      A+   + G+A +++K A     + 
Sbjct: 756 KDAKANGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKN 815

Query: 517 VLQLWK 522
           V +   
Sbjct: 816 VRETNY 821


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 138/406 (33%), Gaps = 69/406 (16%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D E  L      +   G ++  + +    + +  +  +L+ +I ++      +      
Sbjct: 472 TDIEMPLAFTLFDMEQAGVKVKAEELKVYGQQLGGKINELETEIYEIAGETF-NINSPKQ 530

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           L + LF    +     ++       +   + +LA D  +         + KL     + L
Sbjct: 531 LGVVLFEHLNLPNGKKTKTG--YSTAADVLEKLAPDYPIVSKILEYRQLAKLKSTYADGL 588

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           +  +  DGR+ G       + TGR S      QN+P                        
Sbjct: 589 ANFIQEDGRIHGKFN-QTVTATGRISSTEPNLQNIP------------------------ 623

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +       V AD + IE R+LA  +G++  I A+    DI+  T ++
Sbjct: 624 VRMELGRLIRKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQ 683

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P D+V+  +R   K +   + Y     G ++         G  +  + +      T
Sbjct: 684 VFHIPFDEVTDLERRNAKAVNFGIVYGISSFGLSQDLSITRKEAGEYIDNYFKTYPGIKT 743

Query: 472 FEDWEQA---------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F D   A                     ES +   +      A+   + GTA +++K A 
Sbjct: 744 FLDDTVAHAKEQGYVVTLFGRRRPVPELESGNFMQRSFGERVAMNAPIQGTAADIMKIAM 803

Query: 511 RAKH----------QGVLQLWKDLT-EGFACVVQEGGSISARRVAN 545
              +          + VLQ+  +L  E +   V+E  SI  R +  
Sbjct: 804 IGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEE 849


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/499 (15%), Positives = 168/499 (33%), Gaps = 68/499 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            DL     DE +  + +++  + I+    L   I  K     S++         L +   
Sbjct: 359 EDLRALFEDEKIEKIGYDAKEDVIIL---LSKKIDLKNLTYDSMIVEYL-----LDSTAS 410

Query: 115 ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           +  F   ++K + G  K   +   KG       D  +    + +        +  E   E
Sbjct: 411 SFEFQNIISKYDLGSYKDEQSLLGKGVKKKSYSDLEKDELFKYFSFILNGSFKLKEIQME 470

Query: 173 LFKRLIPLS---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             + L  +    + E  L  +   +   G + ++ ++  + + +    + L   I +++ 
Sbjct: 471 KLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEISG 530

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +   T  L   LF    + ++  ++    T + +L          + IL     + 
Sbjct: 531 EEF-NINSTKQLGEILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPIIENILEYRKLTK 589

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   ++   GR+       G + TGR S      QN+P +            
Sbjct: 590 LKNTYIDGLKALINEKTGRIHSRFNQTG-TSTGRISSTEPNLQNIPIRS----------- 637

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +AS    LV  D + IE RVLA ++ +   ++AF +G
Sbjct: 638 -------------EEGRLIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHG 684

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T ++ F+   + V+   R+  K +   + Y     G ++            +  
Sbjct: 685 MDIHTKTASEVFHVDKEDVTDLLRSRAKAVNFGIVYGISDFGLSRQLGITRELAKEYIDG 744

Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500
           +  N K    + D+                      +  + +  ++      A+   + G
Sbjct: 745 YFDNFKKVKEYMDYEIETGKKQGYVKTIFNRRRYIPELSAKNFNIRSFGERIALNTPIQG 804

Query: 501 TACELVKKAWRAKHQGVLQ 519
           +A +++K A    +  + +
Sbjct: 805 SAADIIKIAMVKVYGEIKK 823



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
            ++ K  +   + + ++  Y   +     Y+   +++    R++G ++  N  +Q  + D
Sbjct: 749 FKKVKEYMDYEIETGKKQGYVKTIFNRRRYIPELSAKNFNIRSFGERIALNTPIQGSAAD 808

Query: 609 ILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           I+   M               ++LT+HDE+V +  +     +  +  LM
Sbjct: 809 IIKIAMVKVYGEIKKRNLKSKLILTIHDELVVDAVNDE---LEVVEELM 854


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 866

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 157/495 (31%), Gaps = 83/495 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +   L    +    HN+ F ++L  +  GI++       T +LA  +           
Sbjct: 366 QWIKALLESAVIKKYLHNAKFIQVLLLRH-GIELRGVA-GDTMLLAYVDDPAFEGDELDA 423

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L     L   E                        N ++  +L+ +   +     REL 
Sbjct: 424 CLKKHLQLNIAENNL-----------------AALVNTIR--ELYFQLEGQIPAELREL- 463

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                L + E  +  +   +   G +++   + ++ E +A      +E I +L      +
Sbjct: 464 -----LQEVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGHEERIFELAGSSF-N 517

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L   LF   G+ ++   +    T   +L            ILN    S      
Sbjct: 518 INSPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEIIAHILNYRQLSKIKSTY 577

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            + L E +    GR+    +    + TGR S      QN+P +                 
Sbjct: 578 ADALQELIHPETGRVHTIFK-QAQTATGRLSSVEPNLQNIPIR----------------- 619

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +A      ++ AD + I+ R LA I+G++  I+ F +G DI+
Sbjct: 620 -------MEEGRRIRQAFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSGVDIH 672

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T  + F+ P++ V  E R   K +   + Y     G A+            +  +  +
Sbjct: 673 TRTAVEIFHVPVEWVDSELRRRAKAVNFGIIYGISDFGLARDTGVSRKEARKYIDNYLNS 732

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + +                       +  + +  +Q      A+   + GT+ +
Sbjct: 733 YPGVKKYMEDIVEFGRRHGYVETLLKRRRYLPELNARNKMVQAFGRRMALNTPVQGTSAD 792

Query: 505 LVKKAWRAKHQGVLQ 519
           ++K A     + + +
Sbjct: 793 IIKLAMIKVDEEIRK 807


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W L   + 
Sbjct: 407 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ E +A++ + +++ 
Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 517

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 576

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 577 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 629

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 630 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 672

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 673 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 732

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 733 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 792

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 793 NTPIQGSAADIIKKAMIDLN 812



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 744

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 745 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 804

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 805 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 847


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 351 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 408

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W L   + 
Sbjct: 409 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 464

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ E +A++ + +++ 
Sbjct: 465 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 519

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 520 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 578

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 579 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 631

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 632 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 674

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 675 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 734

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 735 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 794

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 795 NTPIQGSAADIIKKAMIDLN 814



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 746

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 747 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 806

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 807 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 849


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 171/504 (33%), Gaps = 87/504 (17%)

Query: 53  MPSDL-------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           +P+D+        ++LRDE+   V +++    +  K+     +        S+LA     
Sbjct: 346 IPTDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ---GLELNGVSFDSLLAAYIIN 402

Query: 106 PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-----ANHVQAW 156
           P+       +       S  +   E+     A+    ++D+      R      +  +  
Sbjct: 403 PAQNHEDFASVGKEYGLSS-VQSDEQVYGKGAKQAVPNLDALSEHVARKASMLWDLTEKL 461

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +   +   +D          L    D E  L  +   +  +G ++D   +  + + +  +
Sbjct: 462 KTALKENHQDA---------LF--FDLELPLAFILGEMEYQGVKVDRTRLTSMGKELGGK 510

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
            K+L+E I  L      +      L + LF    + ++  ++    T   +L        
Sbjct: 511 LKELEEKIYDLAGETF-NINSPKQLGVILFEKLELPVIKKTKTGYSTSADVLEKLQSKHE 569

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + IL+           +  L + +  D  ++         ++TGR S      QN+P 
Sbjct: 570 IVEYILHYRQLGKLNSTYIEGLLKVIHEDSDKVHTRFN-QALTQTGRLSSTDPNLQNIPI 628

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAW 391
           +                              +R   + S  G  +  AD + IE RVLA 
Sbjct: 629 R------------------------LEEGRKIRQAFVPSKEGWVIFAADYSQIELRVLAH 664

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           I+G++  ++AF   ED++  T  + F+   D V+ E R   K +   + Y     G ++ 
Sbjct: 665 ISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNFGIVYGISDFGLSQS 724

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                   G  ++++     +   + +                       +  S +  ++
Sbjct: 725 LNITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYVSTLLNRRRYIPELTSRNFNLR 784

Query: 487 DQYPEFAVKDKLIGTACELVKKAW 510
                 A+   + G+A +++K+A 
Sbjct: 785 SFGERTAMNTPIQGSAADIIKQAM 808


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 132/381 (34%), Gaps = 65/381 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            ER L  +   +   G+++D D +++  + I  +  KL+  I ++      +      L 
Sbjct: 452 IERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWF-NINSPKQLS 510

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + ++  ++    T   +L           LIL+    +         L +A+
Sbjct: 511 YILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQAI 570

Query: 300 SSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  T    G + TGR +      QN+P +                         
Sbjct: 571 NPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY------------------------ 605

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F 
Sbjct: 606 DEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFG 665

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             I  V+ E R+  K +   + Y     G A+  K         + ++ +       + D
Sbjct: 666 VDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLD 725

Query: 475 WEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                +                      +  ++      A+   + G+  +++K A    
Sbjct: 726 NTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSPADIMKLAMIKV 785

Query: 514 HQG----------VLQLWKDL 524
           +Q           +LQ+  +L
Sbjct: 786 YQKLKENNLKSKIILQVHDEL 806



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R Y  ++  N  +Q    DI+   M    +          I+L VHDE++ E P     
Sbjct: 757 LRGYAERIAMNSPIQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKD 816

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 817 IVKEIVK 823


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 142/402 (35%), Gaps = 55/402 (13%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + +  L  +  ++   G RID DL+ K  E +A++  ++++ I +       +     
Sbjct: 469 YQELDLPLARVLLSMERLGVRIDKDLLAKQSEELAKDIAEIEKQIHEAAGESF-NVGSPK 527

Query: 240 ALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            L + LF   G+     ++ G          +      L+L     S      ++ L   
Sbjct: 528 QLGVILFEKLGLPAGKKTKTGYSTDEEVLLGLEHPIAKLVLQWREMSKLKSTYVDALPTM 587

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +   D R+  +      + TGR S      QN+P +                        
Sbjct: 588 IDPKDERVHTSFN-QALTTTGRLSSTQPNLQNIPIRTAR--------------------- 625

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 VR   IA+   KL+  D + IE R+LA I+ +    KAFA   DI+  T A+ F
Sbjct: 626 ---GQQVRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVF 682

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P+  V+ E R   K +   + Y  G    A+      +     ++++    K+   + 
Sbjct: 683 GVPLKDVTAEHRRSAKAVNFGIAYGQGAFGLAENLGISRTEAKDIIERYFNRFKNVREYI 742

Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512
           D     +H     +                          A+   + GTA +LVKKA   
Sbjct: 743 DGTIKMAHEKGYVETLFGRRRYIDELQSKNMALKKFGERAAINAPIQGTASDLVKKAMIE 802

Query: 513 KHQGV-LQLWKDLTEGFACV-VQEGGSISARRVANVPRLVMR 552
             + V +++   + +       +E     + ++ ++   VM+
Sbjct: 803 VFEKVPVRMLLQVHDELIFEDFEENLQKHSPQLVSIMENVMK 844



 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           R  N  + V       + +              G   Y++   S+ M  + +G +   N 
Sbjct: 730 RYFNRFKNVREYIDGTIKMAHEKGYVETLF---GRRRYIDELQSKNMALKKFGERAAINA 786

Query: 602 -VQAISRDILCEGMKNA-TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651
            +Q  + D++ + M     K    ++L VHDE++ E   +        L S+M
Sbjct: 787 PIQGTASDLVKKAMIEVFEKVPVRMLLQVHDELIFEDFEENLQKHSPQLVSIM 839


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/524 (15%), Positives = 169/524 (32%), Gaps = 65/524 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    +  + +   +    E       L+Q+L D+    + +++     +    LGI+I
Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388

Query: 89  PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +  +    + +       S+ +   +   + ++  K       I  F KG     P + 
Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+ +           +++  E + +   L D E  L  +   + + G   D++ + 
Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIYTDINDLK 502

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++  I ++   L  +I +       +      L + LF    + ++  ++    T   +
Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          D IL     +      +  L + +S D R+        A +TGR S   
Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P +                              +R      S    ++ AD + 
Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +   + Y  
Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G ++            +  +  +      +                           
Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            S +  ++      A+   + G+A +++K A     + + +   
Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820



 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M         TK    ++L VHDE++ E P +        +  +M + 
Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 146/419 (34%), Gaps = 74/419 (17%)

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
                  D E   EL +++      E  L  +  ++ D G  ID   V      + +  +
Sbjct: 429 KKLRSVIDKEGMTELLEKI------ELPLTEVLASMEDIGICIDKQGVEDFGTYLTEMIE 482

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +  + +          +     L   LF   G+     ++    +      + +L  D  
Sbjct: 483 ETQQMVYDDAGHSFNIA-SPKQLGTVLFEEMGLPAKKKTKSGYSTNAE--VLEELRNDAP 539

Query: 279 LNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           +           KLN+     L + ++ DGR+    +    +RTGR S      QN+P +
Sbjct: 540 IVDNVLKFRQYTKLNSTYVVGLLDKIADDGRIHTWFR-QTETRTGRISSTEPNMQNIPVR 598

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G+KLV AD + IE RV+A + 
Sbjct: 599 T------------------------ELGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLC 634

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
           G+   I+AF +GEDI+ +T A+ F+ P   V+ E R+  K +   + Y  G    AK   
Sbjct: 635 GDKNMIEAFNSGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGAFSLAKDIG 694

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQ 488
           T  +     +  +    +  + F +                       +  S +  MQ  
Sbjct: 695 TSVAKAKKYINDYLAKYEKVNEFMETTVDNAFKDGYVTTMFGRKRRIPELSSSNKMMQAA 754

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGS 537
               A+   + GTA +L+K A    +          + +LQ+  +L    +    E  +
Sbjct: 755 GKRIAMNTPVQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEASESDAEHAA 813


>gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 222

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 106/271 (39%), Gaps = 61/271 (22%)

Query: 416 AFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            FN  ++K  V+   R  GK+ ELALGY G     K+M                      
Sbjct: 1   MFNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG--------------------- 39

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A++  +     + +  AWR  +  + +LW D+       V+
Sbjct: 40  -------------------ALEMGIEEEELQPLVTAWRQSNSNITKLWWDVDRAVKVCVK 80

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------AT 584
           +        +  +           + IVLPS RRL Y   +   +              T
Sbjct: 81  QKTPTETHGIKFI------YQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGT 134

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  +YG K  ENIV AISRDIL   M+  T     IV  VHDEI+ E      FS 
Sbjct: 135 KKWERIESYGPKFVENIVHAISRDILYHAMQ--TLKNCSIVAHVHDEIIIEADMRMSFSA 192

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +C  M + PSWA GL L A+GYE + Y+K
Sbjct: 193 --ICEQMARTPSWANGLLLSADGYECQFYQK 221


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 189/617 (30%), Gaps = 133/617 (21%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L          N+ ++R++  +     +  +  +  ++LA        L++A        
Sbjct: 464 LESARHPKTLQNAKYDRLILLRH---GLSLEGVVMDTLLADY------LRDANAKHGLEV 514

Query: 121 HLTKMEEGKALIARFC-KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174
                         F    +  S                   YC  DV  T  L      
Sbjct: 515 L---------AERNFGFTPTSFSELVAKGETFAAVPIAAAARYCAMDVHVTWRLTPLLRG 565

Query: 175 ------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                 + L  L D  E  L  +   +   G RID   +  L E +A     L+    + 
Sbjct: 566 QLQQLGEALPKLLDQVELPLEPVLARMEATGIRIDKPYLATLSEELAGTLASLEAGAREA 625

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  +     L   LF   G++     +         + + +LA D  +  L     
Sbjct: 626 AGVEFNLA-SPKQLGELLFETLGLERKKSRKTKTGWSTDAAVLEKLAGDHPVVPLVLEHR 684

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   V    GR+         + TGR S      QN+P +        
Sbjct: 685 TLSKLKSTYVDALPALVEPETGRVHTDFN-QAVTATGRLSSSNPNLQNIPIRT------- 736

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                              S  +R   +   G +L+ AD + IE R+L  ++GE+  ++A
Sbjct: 737 -----------------EFSRRIRKAFLPQEGWQLISADYSQIELRILTHLSGEEVLVEA 779

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           +ANG+D++  T     +   D+V+ ++R +GK +   + Y  GA+ F   A   G+   Q
Sbjct: 780 YANGDDVHALTARLLLDK--DEVTADERRLGKTINFGVIYGMGAQRF---ARETGVSQSQ 834

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             + +        ++Q         +     A+    + T                    
Sbjct: 835 AKEFLSK------YKQRYPKVFAFLELQERLALSRGYVETI------------------- 869

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
             L          GG    R             K    I L  +RR              
Sbjct: 870 --LGRRRPFAFDPGGLGRLRG------------KPPEEIELEVARRA------------- 902

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSE 635
              +Q +R            +Q  S DI+   M    +    +G    ++L VHDE+V E
Sbjct: 903 GMEAQQLRAAANAP------IQGSSADIIKLAMVQLDQQLRASGLPARLLLQVHDELVLE 956

Query: 636 -TPDTPYFSVGTLCSLM 651
             P+     +  +  +M
Sbjct: 957 AAPEALEPVLAAVKQVM 973


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/529 (15%), Positives = 173/529 (32%), Gaps = 77/529 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFER--ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             ++L +  +        F+R  +L  + LGI++   R    S LA+             
Sbjct: 363 FKEFLENTALKVY----DFKRSKVLLSR-LGIEL--SRPAFDSRLAKYLLSTVDNNEIVT 415

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                   TK+ E +A+   + KG+  + P      +H+          ++ +       
Sbjct: 416 IAGL-YGKTKLAEDEAV---YGKGAKRALPEKAILLSHLARKVTVLIETEKPMTDLLRQH 471

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            +L  L + E+ L  +   +   G +++ + +  +Q    +   +L ++I  L      +
Sbjct: 472 DQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQAENERILTRLTQEIYDLAGEEF-N 530

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                 L   LF   G+      +       +   + +LA    +         I K+ +
Sbjct: 531 INSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQS 590

Query: 295 -----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L + + +DG++         ++TGR S      QN+P +                
Sbjct: 591 TYVMGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPIR---------------- 633

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +       L+ +D + IE RVLA I+G+   I+AF +G DI
Sbjct: 634 --------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADI 685

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + FN    + V+   R   K +   + Y     G A             +  + 
Sbjct: 686 HTSTAMRVFNIERPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYF 745

Query: 464 QNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       +                      +     S +  ++      A+   + G+A
Sbjct: 746 ERYPGIKNYMENVVREARDKGYVETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSA 805

Query: 503 CELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVAN 545
            +++K A     Q +       ++   + +     V E    + + +  
Sbjct: 806 ADILKIAMIRLGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVK 854



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN 654
           +Q  + DIL   M    +   D      ++L VHDEIV E P+    ++  L   +M   
Sbjct: 801 IQGSAADILKIAMIRLGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVKDIMESA 860

Query: 655 PSWAKGLPLKAE 666
                 +PLKA+
Sbjct: 861 IE--LSVPLKAD 870


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 177/572 (30%), Gaps = 101/572 (17%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAE--QAVITLCAYAWDDE-PVKLWDRTEQSAMPSDL 57
            +D ET S       L  +G+    E          +    E P +L        + S L
Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQL----SIEDVFSKL 439

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-- 115
             ++ D        NS F+R +F       +  K     ++LA                 
Sbjct: 440 RTWIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSEISF 496

Query: 116 --LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
               F     K   GK     F   +  S           +  ++F E   ++ +   +L
Sbjct: 497 RLFGFKPPSFKETVGKNKDFSFVDINEASIYCGYDVFLTFKIVKIFKERFSKEKDELIKL 556

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           FK      + E  L  +   +   G  ID+  + KL + +    + ++  + +L D    
Sbjct: 557 FK------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIENKVFELADENFN 610

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
            S     L   LF    +D     +           + +L  +  + +       I KL 
Sbjct: 611 LS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEHEIIQHLIKHRTISKLL 669

Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L   ++   GR+        A+ TGR S      QN+P +              
Sbjct: 670 STYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT------------- 715

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   +     KL+ AD + IE R+LA +A E+  I AF   +D
Sbjct: 716 -----------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDD 764

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFS 463
           I+  T    F    +++S ++R +GK +   + Y  G K F              L ++ 
Sbjct: 765 IHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYK 822

Query: 464 QNVKSTSTFEDWEQ---------------------------------------AESHHLW 484
           +       F + ++                                         +    
Sbjct: 823 ERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAG 882

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           M+ Q    A    + G++ +++K A    ++ 
Sbjct: 883 MEAQSLRAAANAPIQGSSADIIKIAMVQLNKK 914


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/519 (16%), Positives = 174/519 (33%), Gaps = 92/519 (17%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
               + HN  ++ +L K+     +     +  +++A     P             E+   
Sbjct: 435 DTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAP------------EENHNL 479

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAW--QLFGEYCKRDVEATRELFKRLIPLS- 181
            +  ++++        D    D T  + ++    +    Y   D + +  L   L     
Sbjct: 480 DDVARSVLNYKMVPIADLIG-DETDRDSMREVDVETAAPYACEDADISYRLADELEAQLE 538

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +  T+   G R+D D++ ++   + +    ++E++ +L     
Sbjct: 539 DGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEF 598

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L   LF    + +V  +  T K     S + +L+ +  +  L     +  KL
Sbjct: 599 -NINSTQQLGEILFEKLDLPVVSKTP-TGKPSTKESVLQELSTEHEIPGLVLDWRSTYKL 656

Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++L E V    GRL  +      + TGR S      QN+P +             
Sbjct: 657 KSTYLDSLGELVHPETGRLHTSFN-QTRTATGRLSSSDPNLQNIPIRT------------ 703

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +  +G  L+ AD A IE R+LA ++G+D     F  G 
Sbjct: 704 ------------EMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGG 751

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+    A+ +    + V+ EQR+  K +   + Y     G A+  +         ++Q+
Sbjct: 752 DIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQDIIKQY 811

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            ++    S   +                         +S +   +      AV   + GT
Sbjct: 812 RKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNMPIQGT 871

Query: 502 ACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQE 534
             +++K A    H  +       Q+   + +     V  
Sbjct: 872 QADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPP 910


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/492 (15%), Positives = 162/492 (32%), Gaps = 79/492 (16%)

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161
           LP++  +A LA      + +  E   +   + +    + D       +    +  QLF E
Sbjct: 390 LPAASFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF-E 447

Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +  R V+   E  + +            L + E+ L  +   +   G +++ + +  +Q 
Sbjct: 448 HLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQV 507

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
              +  + L ++I  L      +      L   LF   G+ L    +       +   + 
Sbjct: 508 ENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLSLEYTKKTKTGYSTAVDVLE 566

Query: 272 QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           +LA    +         I KL +     L EA+++DG++         ++TGR S     
Sbjct: 567 RLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPN 625

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385
            QN+P                                +R   +       L+ +D + IE
Sbjct: 626 LQNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIE 661

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ-- 442
            RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K +   + Y   
Sbjct: 662 LRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRRNAKAVNFGVVYGIS 721

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAE 479
             G A             ++ + +       + +                          
Sbjct: 722 DFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDIN 781

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQ 533
           S +  +++     A+   + G+A +++K A     + +       ++   + +     V 
Sbjct: 782 SRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVP 841

Query: 534 EGGSISARRVAN 545
                + R++  
Sbjct: 842 NDELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 166/492 (33%), Gaps = 62/492 (12%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      L +L DET      +S    +  K   GI++    +         +   ++
Sbjct: 349 ETALADPKFLAWLGDETKKKTMFDSKRAAVALK-WKGIELRGVVFDLLLAAYLLDPAQAA 407

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
              A +A      + + E  ++  A + KG+  + P + T A H+          +  + 
Sbjct: 408 GDVAAVA-----KMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLVRKAAAIWALEEPLM 462

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                 ++   L++ E+ L  +   +   G ++D   + ++   + ++ + ++  I +L 
Sbjct: 463 DELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA 522

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    + ++  ++    T   +L          + IL+     
Sbjct: 523 GQEF-NINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLG 581

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 +  L + V    G++         ++TGR S      QN+P +           
Sbjct: 582 KLQSTYIEGLLKVVHPVTGKVHTMFN-QALTQTGRLSSVEPNLQNIPIR----------- 629

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   + S    L+  AD + IE RVLA IA +D  I+AF 
Sbjct: 630 -------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFR 676

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            G DI+  T    F+   + V+   R   K +   + Y     G A+            +
Sbjct: 677 RGLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFI 736

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                          S +  ++      A+   +
Sbjct: 737 ERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPI 796

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 797 QGSAADIIKKAM 808


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 130/364 (35%), Gaps = 57/364 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           + + E  L  +   +  RG RI+          + +E  +L +++  +  G   + R + 
Sbjct: 526 MEELEMPLIPVLADMELRGIRINRAEFSGFLAEVQKELDRLTQEVYAVAGGQF-NIRSSQ 584

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNT 294
            L   LF   G+     ++G  ++  S + + +LA      D IL            L  
Sbjct: 585 QLGELLFGTLGLKAGSKTKGG-QASTSQAVLEKLAGKHPVIDTILEYRKLEKLRSTYLEP 643

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L      + R+  T     A+ TGR S      QN+P                       
Sbjct: 644 LPRLAQENDRIHTTFNQL-ATATGRLSSSQPNLQNIP----------------------- 679

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
              G     +R C  A+ G KLV AD + IE RVLA ++ +   I++F   EDI+  T  
Sbjct: 680 -VRGPMGQRMRRCFTAAPGNKLVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAG 738

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
             ++     V+ +QR   K +   L Y  G    A+  K   +     ++++   +    
Sbjct: 739 LLYDVTAADVTPDQRRNAKTINFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLK 798

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F D  +  +                      +  ++ Q    A+   + G+A +++K A
Sbjct: 799 EFYDNVEQSAREHGFVTTLAGRRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKIA 858

Query: 510 WRAK 513
               
Sbjct: 859 MLKA 862


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 127/367 (34%), Gaps = 58/367 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  L     ++   G  +  + +    E ++    +L++ I +       +     
Sbjct: 449 YTQIELPLIFTLDSMEKWGISVKSEELKSYGEKLSVRIGELEKQIWQQAGEEF-NINSPK 507

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            + + LF   G+     ++       +   + +LA +  + +       + KL     + 
Sbjct: 508 QMGVILFEKLGLKGGKKTKTG--YSTAADILEKLAPEYPIVKDILEYRQLAKLKSTYADG 565

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L   ++ DGR+  T      + TGR S      QN+P                       
Sbjct: 566 LVGEIAEDGRIHSTFN-QTITATGRISSTEPNLQNIP----------------------- 601

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   +   G   + AD + IE RVLA ++G++  I+A+   +DI+  T +
Sbjct: 602 -VRMELGRLIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQDIHRHTAS 660

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F+ P D+V+  QR   K +   + Y     G ++            ++++ +      
Sbjct: 661 EVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIERYFETYPKIK 720

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F D                       + +S +   +      A+   + GTA +++K A
Sbjct: 721 GFLDGLVEEGKEKGYVTTMFGRRRPIPELKSGNFMQRSFGERVAMNSPIQGTAADIIKIA 780

Query: 510 WRAKHQG 516
               ++ 
Sbjct: 781 MNRVYRR 787


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/519 (16%), Positives = 175/519 (33%), Gaps = 92/519 (17%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
               + HN  ++ +L K+     +     +  +++A     P             E+   
Sbjct: 412 DTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAP------------EENHNL 456

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL--FGEYCKRDVEATRELFKRLIPLS- 181
            +  ++++        D    D T  + ++  ++     Y   D + +  L   L     
Sbjct: 457 DDVARSVLNYKMVPIADLIG-DETDRDSMREVEVETAAPYACEDADISYRLADELEAQLE 515

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +  T+   G R+D D++ ++   + +    ++E++ +L     
Sbjct: 516 DGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEF 575

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L   LF    + +V  +  T K     S + +L+ +  +  L     +  KL
Sbjct: 576 -NINSTQQLGEILFEKLDLPVVSKTP-TGKPSTKESVLQELSTEHEIPGLVLDWRSTYKL 633

Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++L E V    GRL  +      + TGR S      QN+P +             
Sbjct: 634 KSTYLDSLGELVHPETGRLHTSFN-QTRTATGRLSSSDPNLQNIPIRT------------ 680

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +  +G  L+ AD A IE R+LA ++G+D     F  G 
Sbjct: 681 ------------EMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGG 728

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+    A+ +    + V+ EQR+  K +   + Y     G A+  +         ++Q+
Sbjct: 729 DIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQDIIKQY 788

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            ++    S   +                         +S +   +      AV   + GT
Sbjct: 789 RKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNMPIQGT 848

Query: 502 ACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQE 534
             +++K A    H  +       Q+   + +     V  
Sbjct: 849 QADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPP 887


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 123/365 (33%), Gaps = 58/365 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G  ++   +++      +   ++++DI  L      +      L
Sbjct: 491 EIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGTEF-NISSPKQL 549

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLS 296
              LF   G+    M +       +   + ++       D +L     S      L  + 
Sbjct: 550 GEVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIG 609

Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             +  D GR+  +      + TGR S      QN+P +                      
Sbjct: 610 ALIRPDTGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT--------------------- 647

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   VR+      G   L+ AD + IE R+LA ++G++  I AF  G+DI+  T +
Sbjct: 648 ---EEGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTAS 704

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  P+ +V+  QR   K +   + Y     G ++            ++++ +      
Sbjct: 705 EVFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVR 764

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F D   A++H                     +   +      A+   + GTA +L+K A
Sbjct: 765 AFLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIA 824

Query: 510 WRAKH 514
                
Sbjct: 825 MIRAD 829



 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R+   ++  N  +Q  + D++   M  A            I+L VHDE+V E  +    
Sbjct: 800 QRSNAERMAMNTPIQGTAADLIKIAMIRADAALRAAGVKSRILLQVHDELVLEVVNDE-- 857

Query: 643 SVGTLCSLMTKNPSWAKGL--PLKAE 666
            +  +  L+T   S A  L  PL  +
Sbjct: 858 -IAQVTELLTAAMSGAAQLAVPLAVD 882


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 166/492 (33%), Gaps = 62/492 (12%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      L +L DET      +S    +  K   GI++    +         +   ++
Sbjct: 349 ETALADPKFLAWLGDETKKKTMFDSKRAAVALK-WKGIELRGVVFDLLLAAYLLDPAQAA 407

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
              A +A      + + E  ++  A + KG+  + P + T A H+          +  + 
Sbjct: 408 GDVAAVA-----KMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLARKAAAIWALEEPLM 462

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                 ++   L++ E+ L  +   +   G ++D   + ++   + ++ + ++  I +L 
Sbjct: 463 DELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA 522

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    + ++  ++    T   +L          + IL+     
Sbjct: 523 GQEF-NINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLG 581

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 +  L + V    G++         ++TGR S      QN+P +           
Sbjct: 582 KLQSTYIEGLLKVVHPVTGKVHTMFN-QALTQTGRLSSVEPNLQNIPIR----------- 629

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   + S    L+  AD + IE RVLA IA +D  I+AF 
Sbjct: 630 -------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFR 676

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            G DI+  T    F+   + V+   R   K +   + Y     G A+            +
Sbjct: 677 RGLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFI 736

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                          S +  ++      A+   +
Sbjct: 737 ERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPI 796

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 797 QGSAADIIKKAM 808


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 142/420 (33%), Gaps = 76/420 (18%)

Query: 154 QAWQLFGEYCKRD---VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +A+  F      D    EA  +   RL    + E  L      +   G +++ + +    
Sbjct: 447 EAYTAFAAASVLDNKLKEAEMD---RLF--YEIEMPLVFTLYEMESAGVKVEAEALKLYG 501

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           + + ++  +L+  I ++      +      L + LF    +     ++       +   +
Sbjct: 502 DQLGEQIIQLEHQIYEMAGEEF-NINSPKQLGVILFEKLNMPHAKKTKTG--YSTAADVL 558

Query: 271 TQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA++  +         + KL     + L+  +  DGR+ G       + TGR S    
Sbjct: 559 EKLAEEYPIVSKILEYRQLAKLKSTYADGLAVFIGDDGRIHGKFN-QTVTATGRLSSTEP 617

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R   +       V AD + IE
Sbjct: 618 NLQNIP------------------------VRMELGRMIRKVFVPKEDCVFVDADYSQIE 653

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA  +G++  IKA+    DI+  T ++ F+TP D+V+  QR   K +   + Y    
Sbjct: 654 LRVLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISS 713

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G +             ++ + +       F D                       + +S
Sbjct: 714 FGLSMDLSITRKEAAEYIEHYFETYPGVKKFLDDSVENAKEKGYAVTLFGRRRPVPELKS 773

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFAC 530
            +   ++     A+   + GTA +++K A    H+           +LQ+  +L     C
Sbjct: 774 SNFMQRNFGERVAMNAPIQGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAEC 833


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 105/614 (17%), Positives = 198/614 (32%), Gaps = 117/614 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   L          N  F+R++F +  GI +    +  T + +      +      ++
Sbjct: 432 ELSPILTSADYPKTFQNGKFDRLVF-RCQGIKLAGIVF-DTMLASYVLNPDTPHNLNDIS 489

Query: 116 LNFSEHLTKMEEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +   + K  E            SI S  Y C    H   +QL  +  + ++E    L 
Sbjct: 490 LRYLGLILKSYEDLVPKGQTIADISIASVGYYCCLQVHA-TFQL-VQKLREELEKFPALH 547

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L    + E+ L  +   +   G  I+   + +L + +  +  KL+E    +      +
Sbjct: 548 KLL---LEVEQPLEAVLAEMEYTGVCINSAYLHELSQQLEIDLAKLEETATSIAGETF-N 603

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLASSGS 287
                 L + LF   G+      +         + + +L +       D ++     S  
Sbjct: 604 LGSPKQLSVILFDKLGLSTKYSRKIKTGYSTDVATLEKLQEVDETGFVDAMMEYRTLSKL 663

Query: 288 AILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L   V  D  RL         + TGR S      QN+P +             
Sbjct: 664 KSTYVDALPALVRPDTQRLHTNFN-QTVTATGRLSSSNPNLQNIPIRT------------ 710

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                         S  +R   +  +G  +  AD + IE R+LA ++ E   ++A+   E
Sbjct: 711 ------------AFSRQIRKAFLPESGYLMAAADYSQIELRILAHLSQEPILLQAYQQNE 758

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T    F      ++ ++R I K +   + Y  G+      +   G+D    ++ +
Sbjct: 759 DIHTVTARLVFEKS--DITSDERRIAKTINFGVIYGMGS---LRFSRSTGIDKSIANEFI 813

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
           K  +  E + Q  ++   ++ Q       + ++G                          
Sbjct: 814 KRFN--ERYPQVFAYLEGVKKQAISQGYVETILG-------------------------- 845

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT 582
                                       +R V     S R+L  S  +         L  
Sbjct: 846 ---------------------------RRRYVDFKNDSLRKLKNSKPEDIDLSKLKNLGP 878

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPD 638
             + L+R            +Q  S DI+   M        K    ++L VHDE+V E P 
Sbjct: 879 EDAGLLRSAANAP------IQGSSADIIKIAMIRMHEVLQKYQARLLLQVHDELVFEVPP 932

Query: 639 TPYFSVG-TLCSLM 651
             +  +   + S+M
Sbjct: 933 QEWEELQPQIKSVM 946


>gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
          Length = 950

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/545 (15%), Positives = 168/545 (30%), Gaps = 95/545 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNA 112
           L   L +  +  + HN  F   L K+    +I     I   +L       +S    +K  
Sbjct: 426 LKPILENIKIKKIGHNMKFIFSLLKQH---NIHLSGPIFDVILELYVLYGTSNYQNIKRF 482

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSID---------SPPYDCTRANHVQAWQLFGEYC 163
                  +H+ K ++         K +I          +         H   W    ++ 
Sbjct: 483 LNKTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCSTQLIYAISNLHQILWTEIKQHN 542

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +          K++    + E  L  +   I D G  ID   +      +  +   L   
Sbjct: 543 E---------LKKIF--INIEIPLISVLSRIEDYGVLIDKKFLYSHSIKLNSQLNNLKTQ 591

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +LT     +      L+  L+    + +   +     S  S   + +L+K   + ++ 
Sbjct: 592 AYQLTGSSF-NLDSPKQLQEILYNQEKLPIFKKTPHGAPST-SEEVLKKLSKKHSIPKII 649

Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
               ++ KL     N L   ++    R+  +      + TGR S      QN+P +    
Sbjct: 650 LKYRSLSKLKSTYTNKLISMINKKSNRIHTSYN-QTRTSTGRLSSTNPNLQNIPNRNYD- 707

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA     ++ AD + IE R++A ++ +  
Sbjct: 708 -----------------------GRKIRQAFIAPENSLIISADYSQIELRIMAHLSRDLK 744

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS---- 453
            I  F   +DI+ TT ++ F T +  V+ EQR   K +   L Y   A       S    
Sbjct: 745 LINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMTAFGLSKQLSVTCQ 804

Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492
                + ++ Q       +  +                         S ++  +      
Sbjct: 805 EAQKYVDRYFQRYPGVMQYMQYIKDYAKKNGYVSTLDGRKLYLPDIYSSNISQKKGAERS 864

Query: 493 AVKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARR 542
           A+   + G+A +++K+A  +              ++Q+  +L         +      R+
Sbjct: 865 AINAPMQGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNTFVDIAVKQIRK 924

Query: 543 VANVP 547
           +    
Sbjct: 925 LMEEC 929



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 20/122 (16%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL--MRERTYGGKLT 598
             V    + +    K++ ++     R+L   D+     Y +  + +    R         
Sbjct: 818 PGVMQYMQYIKDYAKKNGYVSTLDGRKLYLPDI-----YSSNISQKKGAERSAINAP--- 869

Query: 599 ENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
              +Q  + DI+   M               +++ VHDE+V E  +T    +V  +  LM
Sbjct: 870 ---MQGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNTFVDIAVKQIRKLM 926

Query: 652 TK 653
            +
Sbjct: 927 EE 928


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 170/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W L   + 
Sbjct: 407 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ E +A++   +++ 
Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQR 517

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 576

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 577 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 629

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 630 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 672

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 673 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 732

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 733 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 792

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 793 NTPIQGSAADIIKKAMIDLN 812



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 744

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 745 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 804

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 805 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 847


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/521 (16%), Positives = 170/521 (32%), Gaps = 70/521 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW +E  +++  T+   + S+  Q    + V        F+R  +    LGID+P+
Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA+                    L    +       + KG+  + P      
Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAIPEKEVLL 445

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +H+       +  K  +        +   L D E  L  +   +   G ++D   + ++ 
Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEMAGIKVDGQTLNEMA 505

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                   KL +DI ++      +      L + LF   G+ L    +       +   +
Sbjct: 506 VENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + +  DG++         ++TGR S    
Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRY-MQDLTQTGRLSSVDP 623

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P                                +R   + S     L+ +D + I
Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTKDAVLLSSDYSQI 659

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G +             +  + +       + D                         
Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDI 779

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            S +  +++     A+   + G+A +++K A     + +++
Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820


>gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 876

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 156/475 (32%), Gaps = 68/475 (14%)

Query: 80  FKKTLGI-DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
            K +L    +     +  + +A     P         +        +     LI +    
Sbjct: 377 LKHSLPFAKLSYGDTVYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSKTDLIKKMSYK 436

Query: 139 SIDSPPYDC-TRANHVQAWQLF---GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              +   D  TR   + A+  F       +R      E   R     + E  L      +
Sbjct: 437 DACAKEQDNFTRMAGLMAYTAFAAGKPLSERLAAEGMEDLYR-----NIELPLIYTLFHM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            D G  +  + +      + ++   L+++I ++T     +      L   LF    I   
Sbjct: 492 EDEGIAVRREELTAYGGKLKKQIAVLEKEIWEMTGQEF-NINSPKQLGEILFEKMQIKGG 550

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
             ++       +   + +LA D  + +         KLN+     L   +  DGR+    
Sbjct: 551 KKTKTG--YSTAADVLEKLAPDYPVIQKILDYRQYTKLNSTYADGLGTYIKEDGRIHSRF 608

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P +                              +R   +
Sbjct: 609 N-QTITATGRISSTEPNLQNIPIR------------------------MELGREIRKVFV 643

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             NG   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P+++V+  QR
Sbjct: 644 PRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQR 703

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K +   + Y     G ++            ++++ +      +F D           
Sbjct: 704 RNAKAVNFGIVYGISAFGLSEDLSISRKEAMEYIERYFETYPQVKSFLDSLVAHAKEQGY 763

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                       + +S +   +      A+   + GTA +++K A     + + +
Sbjct: 764 VTTMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVDERLRR 818



 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M    +          ++L VHDE++ ET +    
Sbjct: 784 QRSFGERVAMNSPIQGTAADIIKIAMIRVDERLRRENLRSRLILQVHDELLIETAEDEKE 843

Query: 643 SVGTL 647
           +V  +
Sbjct: 844 TVMKI 848


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 129/383 (33%), Gaps = 66/383 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E  L  +   +   G  ++++ +  +   +      L E I +L      +      L
Sbjct: 481 RVELPLTRVLGAMESYGVAVNMETLDLMGIELEGGLAALTEAIYELAGEEF-NLNSPKQL 539

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF   G+  V  ++    T  ++L            ++     +      ++ L   
Sbjct: 540 AVILFEKLGLPPVKRTKTGFSTDAAVLEELACRHPIAAKLVEYRQLAKLKSTYVDGLKPL 599

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           V+   G L  +      + TGR S      QN+P                          
Sbjct: 600 VNPRTGSLHTSFN-QTVTATGRLSSSEPNLQNIP------------------------VR 634

Query: 358 GLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   +    G+ L+ AD + IE R+LA I+G++  I AF  GEDI+  T A+ 
Sbjct: 635 LELGRRLRKAFVPHGPGRLLLAADYSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEV 694

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P+ +V+   R   K +   + Y     G ++      S     ++++ +  +    +
Sbjct: 695 FGVPLGEVTPAMRRSAKAVNFGIVYGISDYGLSRDLGISRSEAHDYIERYFRRYRGVKAY 754

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            +   A +                      +  ++      A+   + GTA +++K A  
Sbjct: 755 LEEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFGERTAMNTPIQGTAADIIKMAMV 814

Query: 512 A----------KHQGVLQLWKDL 524
                        + +LQ+  +L
Sbjct: 815 KIFRLLEAQYPAARMILQVHDEL 837


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 171/501 (34%), Gaps = 73/501 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTS--VLARTNGLPSSLKN 111
            +  +Y  DE +  V+ +   E I+    LGI+I      I     ++  +         
Sbjct: 256 DNFKKYFEDENINKVSFDIK-EDIVLFNKLGIEINFPYDDIMLMHYLIDPSRSSYDLKTF 314

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD----- 166
           +   L +     +   GK           +   Y       +  +         D     
Sbjct: 315 SQAFLKYEVLNEEDLLGKG---------RNKKSYKDLSEKELGKYLSSIINAIEDSLDIL 365

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +  +EL    +   D E  L  +   +   G+  D + + K+++ ++ E + L++ I +
Sbjct: 366 TDKLKELSMYEL-YKDCEIKLSKVLADMEITGFVCDKNELEKIKDEVSVELEGLEKIIYE 424

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L + LF    + ++  ++    T   +L            I     
Sbjct: 425 LAGSEF-NINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERYRE 483

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   L +L E +  DGR+R T +    + TGR S      QNLP +          
Sbjct: 484 MYKLKSTYLESLEECIDGDGRIRSTFK-QNVTATGRLSSTEPNLQNLPIRT--------- 533

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R    A N K L+ AD + IE RVLA +A +    +AF+
Sbjct: 534 ---------------EEGRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEAFS 578

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +  DI+  T ++ FNTPID+V+K QR+  K +   + Y     G ++            +
Sbjct: 579 HDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRKRAKEYI 638

Query: 460 QQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKL 498
           + +         +                         +  S +  ++      A+   +
Sbjct: 639 ENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPI 698

Query: 499 IGTACELVKKAWRAKHQGVLQ 519
            G+A +++K A    ++ + +
Sbjct: 699 QGSAADIIKFAMINSYENLKK 719



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M          K    IVL +HDEI+ E        
Sbjct: 686 RSFGERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLQK 745

Query: 644 VGTL 647
              +
Sbjct: 746 AKEI 749


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/542 (17%), Positives = 187/542 (34%), Gaps = 87/542 (16%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I   A+++ ++ V   D  +      DL +    E      H    + ++     GI+ 
Sbjct: 328 EIKKIAFSFGEDTVY-IDVFQIE----DLKEIFEKEEFEFTTHEIK-DFLVKLSYKGIEC 381

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDS 142
            SK +I T+V+A       S  +    L          +     +G+        G    
Sbjct: 382 KSK-YIDTAVMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDIL 440

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y C+R  H+   +              ++ K L    + E  L  + + +   G+ +D
Sbjct: 441 ADYICSRCVHLFDLREKLMNFIE----EMDMKKLL---LEIEMPLVEVLKLMEVSGFTLD 493

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
            +++ +L + I     ++ + I K       +      L  +LF    + ++  ++    
Sbjct: 494 KEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEKLNLPVIKKTKTGYS 552

Query: 260 TLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L        +  D+I  R   +      ++     +  + R+    +    + TG
Sbjct: 553 TDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDENNRVHSNFK-QMVTATG 610

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P +E                             +R   I       +V
Sbjct: 611 RISSTEPNLQNIPIRE------------------------EFGRQIRRAFIPRTKDGYIV 646

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P++KV+ E R   K +  
Sbjct: 647 SADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF 706

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
            + Y     G ++  K         +  + +  K    + +                   
Sbjct: 707 GIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRR 766

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK 522
               +  S +   + Q    A+   + G+A +++K A             K Q +LQ+  
Sbjct: 767 RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHD 826

Query: 523 DL 524
           +L
Sbjct: 827 EL 828



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 17/200 (8%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523
            + S    +   +  +H    +     F   + + + TA E+ K         + +  K 
Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKA 703

Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR----DVHIVLPSSRRLVYSDVK 574
           +  G    + + G      IS +           R+K        IV  +      + + 
Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIM 763

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLT 627
               Y+    S+   +R+   +L  N  +Q  + DI+   M    ++         ++L 
Sbjct: 764 NRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQ 823

Query: 628 VHDEIVSETPDTPYFSVGTL 647
           VHDE+V +T       V  +
Sbjct: 824 VHDELVVDTYKDEVDIVKKI 843


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDILMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDILMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
 gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
          Length = 889

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 176/529 (33%), Gaps = 89/529 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   +L+   ++T + V ++    ++L  + LG+++ +  
Sbjct: 349 FAWSCGD---KLYATDKLELLQDPILKEFLEKTSLKV-YDFKKAKVLLNR-LGLNLQAPA 403

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               N        ++       + KG   + P        
Sbjct: 404 F--DSRLAKYLLSTVENNEISTIANLYGQTYLADD----ETFYGKGVKKAIPER------ 451

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRID 202
               + F E+  R V    E    L+           L D E+ L  +   +   G ++ 
Sbjct: 452 ----EKFLEHLARKVAVLVETEPVLLEKLGEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +L++Q       +KL ++I +L      +      L + LF   G+ L    +    
Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA    + +       I K+ +     L + +  DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVGLQDWILDDGKIHTRYV-QDLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G +             +  + +       + D                 
Sbjct: 722 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 781

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                    S +  ++      A+   + G+A +++K A     + +++
Sbjct: 782 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 140/394 (35%), Gaps = 65/394 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G  +D+  + + +++  ++ K+ +    +L      +      L
Sbjct: 497 EMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDETLNLSSPKQL 556

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSE 297
           ++ LF   G+     ++    +         +           +     K    L+ L +
Sbjct: 557 QVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTLDGLIK 616

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           AV  DGR+  T      + TGR S      QN+P +                        
Sbjct: 617 AVGDDGRIHTTFN-QTVASTGRLSSTEPNLQNIPVRT----------------------- 652

Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
             A   +RS  +   G K L+ AD + IE RV+A ++ +   I+A+  GED++    +K 
Sbjct: 653 -PAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHNFVGSKV 711

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P+D+V+ E R   K M   L Y     G ++     A    + ++ + +       +
Sbjct: 712 FDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLNIPAGEAKVIMESYFERFGGVKRY 771

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW- 510
            D    ++                      +   ++     A+   + GTA +++K A  
Sbjct: 772 LDQVVEQARKDGFTSTLFGRRRYLPELSSDNRVARENAERAALNAPIQGTAADIIKIAML 831

Query: 511 ---------RAKHQGVLQLWKDLTEGFACVVQEG 535
                      + + +LQ+  +L    A   QE 
Sbjct: 832 RVDARLTAENCQSRVLLQVHDELVLEVASGEQEK 865



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M               ++L VHDE+V E        V  L  
Sbjct: 818 IQGTAADIIKIAMLRVDARLTAENCQSRVLLQVHDELVLEVASGEQEKVQQLVE 871


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/580 (15%), Positives = 185/580 (31%), Gaps = 78/580 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW +E  +++  T+   + S+  Q    + V        F+R  +    LGID+P+
Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA+                    L    +       + KG+  + P      
Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAIPEKEVLL 445

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +H+       +  K  +        +   L D E  L  +   +   G ++D   + ++ 
Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEMAGIKVDGQTLNEMA 505

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                   KL +DI ++      +      L + LF   G+ L    +       +   +
Sbjct: 506 VENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + +  DG++         ++TGR S    
Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRY-MQDLTQTGRLSSVDP 623

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P                                +R   + S     L+ +D + I
Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTKDAVLLSSDYSQI 659

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G +             +  + +       + D                         
Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRELPDI 779

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            S +  +++     A+   + G+A +++K A     + +++             +    +
Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGY--------KTKMLLQV 831

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               +  VPR  +   K  V   + ++  L    +  +  
Sbjct: 832 HDEIILEVPRDELLAMKALVKETMEAAVELAVPLIADENE 871


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 351 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 408

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 409 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 464

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 465 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 519

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 520 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 578

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 579 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 631

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 632 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 674

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 675 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 734

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 735 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 794

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 795 NTPIQGSAADIIKKAMIDLN 814



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 746

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 747 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 806

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 807 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 849


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 140/384 (36%), Gaps = 65/384 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E+ L  +  ++   G+++D D + +++E    E  K+ ++I  L++    +     
Sbjct: 479 LYEVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKEIYFLSEEEF-NINSPK 537

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + ++  ++    T   +L   +      + I+     +      +  L 
Sbjct: 538 QLGKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIYYRQLTKLYSTYIEGLK 597

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  DG++         + TGR S      QN+P +                       
Sbjct: 598 GVIEEDGKIHSNFN-QTVTTTGRLSSTEPNLQNIPIKY---------------------- 634

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   I  N    ++ AD + IE RVLA I+G++  I AF N  DI+  T ++
Sbjct: 635 --EMGKEIRKIFIPDNRDCVILSADYSQIELRVLAHISGDENLINAFINHNDIHTKTASE 692

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471
            FN P+ +V+  QR+  K +   + Y  G    A+            +  + +       
Sbjct: 693 VFNVPLGEVTSTQRSNAKAVNFGIVYGIGDFSLARNLNIPRKEAKSYIDAYFEKYPKVKL 752

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                       + +S +  ++     FA+   + G+A +++K A 
Sbjct: 753 YMNDIVKQAEKNFYVTTILNRRRFIPEIKSSNKIIKALGERFAMNTPIQGSAADIIKIAM 812

Query: 511 RA----------KHQGVLQLWKDL 524
                       K + +LQ+  +L
Sbjct: 813 VNVFNRLKDNNFKSKIILQVHDEL 836



 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642
            +  G +   N  +Q  + DI+   M         N +   I+L VHDE+V         
Sbjct: 787 IKALGERFAMNTPIQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYKDELK 846

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 847 DVKDIVK 853


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/529 (15%), Positives = 174/529 (32%), Gaps = 66/529 (12%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           Y + A I    +  + +   +    +      +L+Q+L D+    + +++     +    
Sbjct: 328 YLKDA-ILKFGFYTNHQ--HVVINADDVKDYKNLVQWLEDKNTTKIVYDAKK-TYVSAHR 383

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           LGI+I +  +    + +       S+ +   +   + ++  K       I  F KG    
Sbjct: 384 LGINIENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITVFGKGKKHH 437

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +     H+ +           +++  E + ++  L D E  L  +   + + G   D
Sbjct: 438 IPEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTD 497

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           ++ + +++  I ++   L  +I +       +      L + LF    + ++  ++    
Sbjct: 498 INDLKEMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYS 556

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          D IL     S      +  L + +S D R+        A +TGR
Sbjct: 557 TAVDVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P +                              +R      S    ++ 
Sbjct: 616 LSSVDPNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILS 651

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +   
Sbjct: 652 ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFG 711

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE--------------------- 473
           + Y     G ++            +  +  +      +                      
Sbjct: 712 IVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRR 771

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                 S +  ++      A+   + G+A +++K A     + + +   
Sbjct: 772 YIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820



 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M         TK    ++L VHDE++ E P +        +  +M + 
Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/503 (16%), Positives = 169/503 (33%), Gaps = 78/503 (15%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103
            D  +++     L   L+ ++V     N+   +I+    LGI +  +      +LA    
Sbjct: 358 VDLLKEAP----LKDLLQSDSVKKNVFNAK-AQIVGLHRLGIPL--ENINFDLLLASYLL 410

Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLF 159
                 + L        +   +   EE       + KG+  + P D  T  +H+      
Sbjct: 411 NTNDNSNDLGQVAQEHGYD-DVRTDEEV------YGKGAKRAVPDDDETFFSHLATKARA 463

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            E+ ++D  A  +  K+    +D E  L  +   +   G  +D   +  +   + +   +
Sbjct: 464 IEHLRKDFFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSE 523

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           ++  I +       +   T  L   LF    + ++  ++    + +    + +LA    +
Sbjct: 524 IESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVD--VLEKLADKSPI 580

Query: 280 NRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                    I KL +     L + + S+ +   T      ++TGR S      QN+P   
Sbjct: 581 VEQILEYRQIAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP--- 637

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393
                                        +R   + S  G ++  +D + +E RVLA I 
Sbjct: 638 ---------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHIT 676

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVF 448
           G+    + F NGEDI+ +T  + F+   D ++ +  R   K +   + Y     G A+  
Sbjct: 677 GDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDYGLAQRI 736

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QD 487
               +     +Q +         + +   A +                          + 
Sbjct: 737 HVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYLPDIHAKSFSKRS 796

Query: 488 QYPEFAVKDKLIGTACELVKKAW 510
                A+   + G+A +++K A 
Sbjct: 797 FAERTAMNTPIQGSAADIIKIAM 819


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/521 (16%), Positives = 170/521 (32%), Gaps = 70/521 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW +E  +++  T+   + S+  Q    + V        F+R  +    LGID+P+
Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA+                    L    +       + KG+  + P      
Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAIPEKEVLL 445

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +H+       +  K  +        +   L D E  L  +   +   G ++D   + ++ 
Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEMAGIKVDGQTLNEMA 505

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                   KL +DI ++      +      L + LF   G+ L    +       +   +
Sbjct: 506 VENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + +  DG++         ++TGR S    
Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRY-MQDLTQTGRLSSVDP 623

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P                                +R   + S     L+ +D + I
Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTKDAVLLSSDYSQI 659

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G +             +  + +       + D                         
Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDI 779

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            S +  +++     A+   + G+A +++K A     + +++
Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/524 (15%), Positives = 169/524 (32%), Gaps = 65/524 (12%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    +  + +   +    E       L+Q+L D+    + +++     +    LGI+I
Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388

Query: 89  PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +  +    + +       S+ +   +   + ++  K       I  F KG     P + 
Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+ +           +++  E + ++  L D E  L  +   + + G   D++ + 
Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++  I ++   L  +I +       +      L + LF    + ++  ++    T   +
Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          D IL     +      +  L + +S D R+        A +TGR S   
Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P +                              +R      S    ++ AD + 
Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RVLA I  ++    AF N  DI+  T  K FN   D+V    R   K +   + Y  
Sbjct: 657 IELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G ++            +  +  +      +                           
Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            S +  ++      A+   + G+A +++K A     + + +   
Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820



 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M         TK    ++L VHDE++ E P +        +  +M + 
Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 186/540 (34%), Gaps = 88/540 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-I 86
            V    A+ +   P + W     SA+P  L   L D  V  VAH    +     + L  +
Sbjct: 380 PVYLPLAHRYLGVPAQ-W-----SALPEALRALLADPAVEIVAH----DVKSLARLLRTL 429

Query: 87  DIPSKRWI-CTSVLARTNGLPSSLK-----NACLALNFSEHLTKMEEGKALIARFCKGSI 140
           D P    +  T + A   G    L+      A +        + +  G++ I  F    I
Sbjct: 430 DAPLAGVLGDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIG-FEAVDI 488

Query: 141 DSPPYDCTRANHVQA--WQLFGE---YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
            +       A       W   GE   +   D  A R+L          E  L LL   I 
Sbjct: 489 SAAAMRAGGAAAAVLASWPRLGEQLEHAGGD-GALRKLHDE------LELPLALLLAEIE 541

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
           + G  +D+  +  L + +  +   ++  + +L      +      L   LF   G+    
Sbjct: 542 EHGITLDVPYLRALADELGGQLAGIERQVYELAGEEF-NLGSPKQLGHMLFEKLGLRADK 600

Query: 256 MSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308
           M    T     +H  +  +A+   +         +LKL     + L   V+   GR+  +
Sbjct: 601 MRRTKTGSYSTNHEILESMAESHAIIPPIIEHRELLKLKGTYLDALPPLVNPHTGRIHTS 660

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 + TGR S      QN+P ++                             +R   
Sbjct: 661 FN-QAVAATGRLSSQDPNLQNIPIRK------------------------DIGRRIRRAF 695

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A+ GK LV  D + IE RV+A ++G++  ++AF N  D++  T A+ F+ P +++  ++
Sbjct: 696 VAAPGKTLVSIDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDE 755

Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------- 474
           R + K +   L Y     G A+      +     ++++ +   +   + D          
Sbjct: 756 RRVAKAVNYGLMYGQSEFGLAQSLGISRAQAAHYMERYFERFSTVRAYMDQVVADARAEG 815

Query: 475 -----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                          ++ +   +      A    + G+A +++K A       + +   D
Sbjct: 816 AAVTLLGRRRPIPDLDARNQQRRRAAERVAQNTPVQGSAADIIKLAMLRVAAHLARGEWD 875



 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654
           VQ  + DI+   M     +         ++LTVHDE+V E  P+        + + M   
Sbjct: 850 VQGSAADIIKLAMLRVAAHLARGEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEG- 908

Query: 655 PSWAKGLPLKA 665
            ++A  +PL A
Sbjct: 909 -AYALDVPLVA 918


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 131/365 (35%), Gaps = 58/365 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L      + + G R+  D +    E + +   +L+  I +       +      L
Sbjct: 487 EVEMPLVYTLCHMEEAGIRVLPDELETYGENLKEGIARLETSIYEAAGEKF-NINSPKQL 545

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAILKLNTLS 296
            + LF    +     ++       +   + +LA D+     IL     +       + L+
Sbjct: 546 GVILFEKMQLPGGKKTKTG--YSTAADVLEKLAVDVPFVADILEYRQLTKLKSTYADGLA 603

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +++DGR+  T +    + TGR S      QN+P +                       
Sbjct: 604 ACIAADGRIHTTFK-QTITATGRISSTEPNLQNIPTR----------------------- 639

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R C +  +G   V AD + IE RVLA ++G++  I+A+ + EDI+  T ++ 
Sbjct: 640 -IELGRQIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITASQV 698

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P+ +V+   R   K +   + Y   A                 +  + +       +
Sbjct: 699 FHVPLSEVTPLMRRNAKAVNFGIVYGISAHGLSEDLNISRKEAQEYIDSYYEAYPGIRGY 758

Query: 473 ED--------WEQAESHHL------------WMQDQY-PEFAVKDKLIGTACELVKKAWR 511
            +         E +E+++             +MQ Q+    A    + GTA +++K A  
Sbjct: 759 LESLVETAKKKEYSETYYGRRRPMPELSSGNFMQRQFGERVAKNAPIQGTAADIIKIAMN 818

Query: 512 AKHQG 516
              Q 
Sbjct: 819 RVDQR 823



 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 27/106 (25%)

Query: 569 VYSDVKGDCSYLNTATSQLMRERTY--------------------GGKLTENI-VQAISR 607
            Y  ++G    L     +     TY                    G ++ +N  +Q  + 
Sbjct: 751 AYPGIRGYLESLVETAKKKEYSETYYGRRRPMPELSSGNFMQRQFGERVAKNAPIQGTAA 810

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           DI+   M    +          ++L VHDE++ ET +     V  +
Sbjct: 811 DIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREI 856


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 169/499 (33%), Gaps = 76/499 (15%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +   S  L +L DET      ++    +  K   GI++         +LA     P+ 
Sbjct: 349 ETALADSQFLAWLADETKKKSMFDAKRAVVALK-WKGIELR--GVAFDLLLAAYLLNPAQ 405

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
                 A+     + + E  ++  A + KG   S P + T A H+       W L   + 
Sbjct: 406 DAGDIAAV---AKMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF- 461

Query: 164 KRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                   +L        L+  E+ L  +   +   G  +D   + ++   +A++ + ++
Sbjct: 462 ------MDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIE 515

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278
           + I +L      +      L + LF    + ++  ++    T   +L          + I
Sbjct: 516 QRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENI 574

Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+           +  L + V  D G++         ++TGR S      QN+P +    
Sbjct: 575 LHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---- 629

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396
                                     +R   + S    L+  AD + IE RVLA IA +D
Sbjct: 630 --------------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDD 669

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+AF    DI+  T    F+   ++V+   R   K +   + Y     G A+      
Sbjct: 670 NLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITR 729

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 ++++  +      + +                          S +  ++     
Sbjct: 730 KEAAEFIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAER 789

Query: 492 FAVKDKLIGTACELVKKAW 510
            A+   + G+A +++KKA 
Sbjct: 790 TAMNTPIQGSAADIIKKAM 808



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M + 
Sbjct: 796 IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQA 855


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/502 (17%), Positives = 175/502 (34%), Gaps = 69/502 (13%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-- 108
             + S L +   +E ++ + HN  +++++ ++  GI I     I        +G  S   
Sbjct: 195 EEILSYLKKIFENEHLLKIGHNIKYDKLVLQRY-GIIIRGFEDIMLMSYVLDSGRYSHDI 253

Query: 109 --LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165
             +    L  +       ++ GK  I+     +     Y   ++N  +Q W L     K 
Sbjct: 254 ANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQEYVVEKSNVILQLWLLL--RAKL 311

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E    +++RL      ++ +  +   +   G +ID  L+ ++   I+++   L+E I 
Sbjct: 312 IAEKLLHVYERL------DKPMIDIVAQMETTGIQIDRQLLAQVSSEISKDLLCLEEKIH 365

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ-LAKDLILN 280
            L      +      L   LF          ++     T    L   N    +  + IL 
Sbjct: 366 NLAGEKF-NISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQINCQDNILIEHILE 424

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               S       ++L   ++   +   T     ++ TGR +      QN+P         
Sbjct: 425 WRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASLEPNLQNIP--------- 475

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA   KKL+ AD + IE R+LA +A  +   +
Sbjct: 476 ---------------VKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQ 520

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456
           AF N  DI+    ++ F   I++VS   R   K +  ++ Y       A   K   S   
Sbjct: 521 AFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIYGISPFRLANQLKIKRSEAT 580

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +Q++         + +                     +++  S  + +++     A+ 
Sbjct: 581 DYIQRYFDRFPGIHEYIEKTKNFARKNSYVETIFGRRIYYDEINSPKVSIRNLNERAAIN 640

Query: 496 DKLIGTACELVKKAWRAKHQGV 517
             + G+A ++ ++A    H+ +
Sbjct: 641 APIQGSAADITRRAMILVHKSI 662


>gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 680

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/592 (14%), Positives = 194/592 (32%), Gaps = 89/592 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   + + +L+   ++T + V ++    ++L  +  G+D+ +  
Sbjct: 140 FAWSCGD---KLYATDKLELLQNPILKDFLEKTPLKV-YDFKKAKVLLNR-FGLDLQAPA 194

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               +       +++       + KG   + P   T   H
Sbjct: 195 F--DSRLAKYLLSTVENNEISTIASLYGQTYLVDD----ETFYGKGVKKAIPERETFLEH 248

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           +             VE    L ++L        L D E+ L  +   +   G ++  + +
Sbjct: 249 L------ARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKMEIAGIKVKKETL 302

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       +KL ++I +L      +      L   LF   G  +    +       +
Sbjct: 303 LEMQAGNELVIEKLTQEIYELAGEEF-NINSPKQLGELLFENLGFPIEYTKKTKTGYSTA 361

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + + +DG++         ++TGR S
Sbjct: 362 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 420

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 421 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 456

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 457 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 516

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +             +  + +       + D                     
Sbjct: 517 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 576

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                S +  ++      A+   + G+A +++K A     + ++              + 
Sbjct: 577 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 628

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    V  VP+  +   K+ V   +  + +L    +  +   +    ++
Sbjct: 629 LLQVHDEIVLEVPKSELAAIKKIVKQTMEEAIQLSVPLIADENEGVTWYEAK 680


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/546 (16%), Positives = 189/546 (34%), Gaps = 87/546 (15%)

Query: 11  RSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            S   + K          +  +    +  I   A+++ ++ V   D  +      DL + 
Sbjct: 300 WSKVDIKKLIALLQDSKSIAFYPLIYEGEIKKIAFSFGNDTVY-IDGFQI----KDLKEI 354

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN--- 117
              E      H    + ++     GI+  SK ++ T+++A       S  +    L    
Sbjct: 355 FEKEKFEFTTHEIK-DFLVKLSYKGIECKSK-YMDTAIMAYLLNPSESNYDLDRVLKKYL 412

Query: 118 ---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                 +     +G+        G      Y C+R  H+   +        +++  + L 
Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMD-MKRL- 470

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                L + E  L  + +++   G+ +D +++ +L + I     ++ + I K       +
Sbjct: 471 -----LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-N 524

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290
                 L  +LF    + ++  ++    T   +L        +  D+I  R   +     
Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKST 583

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++     +  + R+    +    + TGR S      QN+P +E                
Sbjct: 584 YIDGFLPLMDENNRVHSNFK-QMVTSTGRISSTEPNLQNIPIRE---------------- 626

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   I       +V AD + IE RVLA ++G++  I++F N EDI+
Sbjct: 627 --------EFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
           + T ++ F  P++KV+ E R + K +   + Y     G ++  K         +  + + 
Sbjct: 679 LRTASEVFKVPMEKVTPEMRRVAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFER 738

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            K    + +                       +  S +   + Q    A+   + G+A +
Sbjct: 739 YKGVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAAD 798

Query: 505 LVKKAW 510
           ++K A 
Sbjct: 799 IIKMAM 804



 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 23/203 (11%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523
            + S    +   +  +H    +     F   + + + TA E+ K         + ++ K 
Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRVAKA 703

Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR-------DVHIVLPSSRRLVYS 571
           +  G    + + G      IS +           R+K         V     +   +   
Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIM 763

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDI 624
           + +    Y+    S+   +R+   +L  N  +Q  + DI+   M          K    +
Sbjct: 764 NRR---RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLKLKSKL 820

Query: 625 VLTVHDEIVSETPDTPYFSVGTL 647
           +L VHDE+V +T       V  +
Sbjct: 821 ILQVHDELVVDTYKDEVEIVKKI 843


>gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 936

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/553 (15%), Positives = 172/553 (31%), Gaps = 99/553 (17%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             + S L   L +E +  V  +  F   + K+    +I         +L         L 
Sbjct: 406 EEILSILQPTLENEKIKKVGQHLKFSYSILKRY---NINLAGMAFDVILELYI-----LY 457

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRD 166
                 +    L K          F   +     YD    N     +Q  QL   Y  + 
Sbjct: 458 GTANYHDIKNFLDKDT--------FNVVTNFKKNYDNYNENNILSDLQNIQLQSLYAAKF 509

Query: 167 VEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           +++   L   L P             + E  L  +   I + G  ID  L+      +  
Sbjct: 510 IKSLFNLHHTLWPKIEANNKLKKIFEEVEMPLISILSRIENYGVLIDKKLLNTHAVELDY 569

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
               L+ +  +L       +  T  L+  L+    + ++  +     S  +   + +L+K
Sbjct: 570 RLHALELEAYQLVGTPFNLA-STKQLQEILYNQQKLPILKKTPKGAPST-NEEVLKKLSK 627

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
              + R+     A+ KL     N L   ++    R+  +      + TGR S      QN
Sbjct: 628 KYSMPRIILQYRALSKLQSTYINKLIAMINKKSNRVHTSYN-QTRTSTGRLSSTSPNLQN 686

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   IA     +V AD + IE R++
Sbjct: 687 IPNRNYD------------------------GRKIRQAFIAPKNFLIVAADYSQIELRIM 722

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ +   I  F + +DI+  T ++ F T +  V+ EQR   K +   L Y   A    
Sbjct: 723 AHLSQDIELINDFLSEKDIHTATASEIFVTALHLVTDEQRQRAKTINFGLIYGMSAFGLA 782

Query: 450 TMA----SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQY----- 489
                        + ++         +                 +   L++ D Y     
Sbjct: 783 RQLSVTCKEAQKYVDRYFNRYPGVMKYMQHIREHANKYGYVSTLDGRRLYLPDIYSANIL 842

Query: 490 -----PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534
                   A+   + G+A +++KKA  +            + ++Q+  +L       + +
Sbjct: 843 QKKGAERAAINAPMQGSAADIIKKAMISIDNWLQKDEIPARIIMQVHDELVFEVHNDIVD 902

Query: 535 GGSISARRVANVP 547
                 +++    
Sbjct: 903 PVVKKIKKLMEEC 915



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTE 599
             V    + +     +  ++     RRL   D+       N    +   R          
Sbjct: 804 PGVMKYMQHIREHANKYGYVSTLDGRRLYLPDIYSA----NILQKKGAERAAINAP---- 855

Query: 600 NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMT 652
             +Q  + DI+ + M +             I++ VHDE+V E   D     V  +  LM 
Sbjct: 856 --MQGSAADIIKKAMISIDNWLQKDEIPARIIMQVHDELVFEVHNDIVDPVVKKIKKLME 913

Query: 653 K 653
           +
Sbjct: 914 E 914


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 169/499 (33%), Gaps = 76/499 (15%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +   S  L +L DET      ++    +  K   GI++         +LA     P+ 
Sbjct: 351 ETALADSQFLAWLADETKKKSMFDAKRAVVALK-WKGIELR--GVAFDLLLAAYLLNPAQ 407

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
                 A+     + + E  ++  A + KG   S P + T A H+       W L   + 
Sbjct: 408 DAGDIAAV---AKMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF- 463

Query: 164 KRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                   +L        L+  E+ L  +   +   G  +D   + ++   +A++ + ++
Sbjct: 464 ------MDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIE 517

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278
           + I +L      +      L + LF    + ++  ++    T   +L          + I
Sbjct: 518 QRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENI 576

Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+           +  L + V  D G++         ++TGR S      QN+P +    
Sbjct: 577 LHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---- 631

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396
                                     +R   + S    L+  AD + IE RVLA IA +D
Sbjct: 632 --------------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDD 671

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+AF    DI+  T    F+   ++V+   R   K +   + Y     G A+      
Sbjct: 672 NLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITR 731

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 ++++  +      + +                          S +  ++     
Sbjct: 732 KEAAEFIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAER 791

Query: 492 FAVKDKLIGTACELVKKAW 510
            A+   + G+A +++KKA 
Sbjct: 792 TAMNTPIQGSAADIIKKAM 810



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M + 
Sbjct: 798 IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQA 857


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 140/410 (34%), Gaps = 73/410 (17%)

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +  +    ++  EA  E           ER        +   G  ++ D + +  + + 
Sbjct: 458 PFHAYPLVLEKLREAEMEEL-----YLTIERPTVATLYDMEKYGITVEKDALKEYGDQLV 512

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              ++L+++I +       +      L + LF    +     ++       S   + +LA
Sbjct: 513 GRIEELEKNIYEQAGKTF-NINSPKQLGVILFEDLKMPFAKKTKTG--YSTSADILEKLA 569

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
            D  +         + KL     + L+  +  DG++         + TGR S      QN
Sbjct: 570 PDYPIVSNILEYRQLTKLKSTYADGLAAFIQEDGKIHSIF-HQKVTATGRLSSSDPNLQN 628

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                     I  PLG     +R   +  +G   V AD + IE RVL
Sbjct: 629 IP---------------------IRMPLG---RAIRKVFVPDSGYVFVSADYSQIELRVL 664

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A +AG++  I A+ +GEDI+  T ++ F  P ++V+   R   K +   + Y     G +
Sbjct: 665 AHMAGDEHLIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNFGIVYGISAFGLS 724

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484
           +  K         + ++        T+ D   A +                      +  
Sbjct: 725 QDLKISRKEASEYIDKYFATYPGIKTYLDGNVAFAKKEGYVKTLYGRVRPIPELSSSNFM 784

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            +      A+   + GTA +++K A               + +LQ+  +L
Sbjct: 785 QRSFGERVAMNSSIQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDEL 834



 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M          K    ++L +HDE++ ET +    
Sbjct: 785 QRSFGERVAMNSSIQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDELLIETKEDEVE 844

Query: 643 SVGTL--CSLMTKN 654
            V  +    +M   
Sbjct: 845 EVRKILKEEMMGAA 858


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 134/400 (33%), Gaps = 61/400 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L L+   +   G  +D++ + +  ++  +  ++ +     +      +      L
Sbjct: 484 DLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQL 543

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSE 297
           ++ LF   G+     ++    +         +           +     KL T    L +
Sbjct: 544 QVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTTLEGLIK 603

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           AV SDGR+  T     AS TGR S      QN+P + +                      
Sbjct: 604 AVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQD--------------------- 641

Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++    ++ 
Sbjct: 642 ---GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRV 698

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P+D+V+ E R   K M   L Y   A    +     A      +  + +       +
Sbjct: 699 FEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQY 758

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D    ++                      +   ++     A+   + GTA +++K A  
Sbjct: 759 LDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMI 818

Query: 512 AKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
              Q       V ++   + +     +        R +  
Sbjct: 819 RVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVE 858



 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 26/270 (9%)

Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IKA  +   I+ T       T   +   P  +    +   G+ +  A     G +  
Sbjct: 599 EGLIKAVGSDGRIHTTFNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETL 658

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++++  +   +     E + Q E  H +         V  ++     + V  
Sbjct: 659 LT-ADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNY---------VGSRVFEVPVDQVTP 708

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R + + +          F    Q       A+++           K+ +  V+  +R+
Sbjct: 709 ELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK 768

Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT----KNG 621
             ++    G   YL    S     R    +   N  +Q  + DI+   M        K G
Sbjct: 769 DGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDQELKKAG 828

Query: 622 Y--DIVLTVHDEIVSETPDTPYFSVGTLCS 649
               ++L VHDE+V E        V  +  
Sbjct: 829 VVSRVLLQVHDELVVEIAPNELEQVREIVE 858


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 166/506 (32%), Gaps = 71/506 (14%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
              ++ +   L   L D +V  +  N  F+ I+  K  GI++ S             G  
Sbjct: 386 CINKNDVIKKLKPLLEDPSVKKIGQNIKFDFIVLFKQ-GIEMTSMEDTMLMSYVLDAGKN 444

Query: 107 SS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGE 161
                 L    L          +  GK  I         +  Y    A+   + ++ F +
Sbjct: 445 RHNMDTLSEIHLGHKTISFKEIVGTGKKEINFSDVEIERAKDYAAEDADITFRLYKKFSK 504

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             K  +E    +++        E+ L  +   +   G  +D   +  L     ++ K L+
Sbjct: 505 NLK--LEKMINIYEIF------EKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLE 556

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILN 280
           ++I K++      +     L   ++    I  +  ++       S S +  LA K     
Sbjct: 557 KEIFKISKKDFNIA-SPKQLGEIIYNDLKIAELKKTKKG-SFATSASVLEDLAFKGHKFP 614

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +L      + KL     ++L E ++ + +   T     A+ TGR +      QN+P +  
Sbjct: 615 KLVLDWRQVSKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSE 674

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R    +     L+ AD   IE R+LA +A  
Sbjct: 675 D------------------------GRDIRKAFTSRKNHLLISADYNQIEMRILADLADV 710

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
               KAF N EDI+  T ++ FN  I KV ++QR   K +   + Y     G AK     
Sbjct: 711 KELKKAFKNDEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVS 770

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                  L  +         + +                     +      +  +++   
Sbjct: 771 NYEAEEFLDAYFAKFPEIKIYMNDTIKFCRKSGYVNNIFGRRSHFNGINDKNFNVRNFQE 830

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQG 516
             A+   + G+A E+++ A    ++ 
Sbjct: 831 RAAINAPIQGSASEIMRLAMIRLNKK 856


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 118/626 (18%), Positives = 194/626 (30%), Gaps = 138/626 (22%)

Query: 60  YLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            L D  V  + H+   + +         + L +D     ++  +          +L++A 
Sbjct: 373 MLEDPQVRKIGHDLKRDMLWLAAHEIRLRGLELDTMIASYLLDATRTTPTVETVALEHAG 432

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             AL       K  +                 Y C RA+            + D E   E
Sbjct: 433 YQALTADTVRGKGAKAPDFDRL---PPDGVLAYACERADLPLQAAE-PLRARLDQERLAE 488

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L++ L      E+ L  +   I   G ++  D +      +  +  +L   I  L     
Sbjct: 489 LYREL------EQPLIPVLADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAGEEF 542

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L   LF    +     +  T  +  +   + +LA+   L RL     A+ KL
Sbjct: 543 -NINSPRQLSAILFEKLALPTRKKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKL 601

Query: 293 -----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L + V  D GR+  +      + TGR S      QN+P               
Sbjct: 602 KGTYVDALPQLVRPDTGRVHTSFN-QAVAATGRLSSSDPNLQNIP--------------- 645

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                 I  PLG     +R   +A +G  L+ AD + IE RVLA ++ +    +AF   E
Sbjct: 646 ------IRTPLG---REIRRAFVARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNE 696

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T    F       + E R   K++  AL Y    K   T++   G+  Q      
Sbjct: 697 DIHDKTALHVFGPDSGLDAHELRRRAKIINYALLYG---KTAFTLSRDIGVTPQ------ 747

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                              A +    A+   +  V      + +
Sbjct: 748 -----------------------------------AAQAFIDAYFEGYPAVRGFLDGVID 772

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                 +E G +  R +    RLV     R+  I   + R                    
Sbjct: 773 EA----RESGEV--RTMFGRRRLVPELRNRNGQIRAAAERVT------------------ 808

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFS 643
                          +Q  + DIL   M +          ++LTVHDE++ E P     S
Sbjct: 809 -----------VNMPIQGTAADILKRAMIDLAGALPPSAPMILTVHDELLIEPPRDEADS 857

Query: 644 VGTLC-SLMTKNPSWAKGL--PLKAE 666
           V  L    M +    A  L  PL+ +
Sbjct: 858 VADLVRDRMER----AADLTVPLRVD 879


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 134/400 (33%), Gaps = 61/400 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L L+   +   G  +D++ + +  ++  +  ++ +     +      +      L
Sbjct: 484 DLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQL 543

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSE 297
           ++ LF   G+     ++    +         +           +     KL T    L +
Sbjct: 544 QVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTTLEGLIK 603

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           AV SDGR+  T     AS TGR S      QN+P + +                      
Sbjct: 604 AVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQD--------------------- 641

Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++    ++ 
Sbjct: 642 ---GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRV 698

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P+D+V+ E R   K M   L Y   A    +     A      +  + +       +
Sbjct: 699 FEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQY 758

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D    ++                      +   ++     A+   + GTA +++K A  
Sbjct: 759 LDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMI 818

Query: 512 AKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
              Q       V ++   + +     +        R +  
Sbjct: 819 RVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVE 858



 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 26/270 (9%)

Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IKA  +   I+ T       T   +   P  +    +   G+ +  A     G +  
Sbjct: 599 EGLIKAVGSDGRIHTTFNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETL 658

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++++  +   +     E + Q E  H +         V  ++     + V  
Sbjct: 659 LT-ADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNY---------VGSRVFEVPVDQVTP 708

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R + + +          F    Q       A+++           K+ +  V+  +R+
Sbjct: 709 ELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK 768

Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT----KNG 621
             ++    G   YL    S     R    +   N  +Q  + DI+   M        K G
Sbjct: 769 DGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDQELKKAG 828

Query: 622 Y--DIVLTVHDEIVSETPDTPYFSVGTLCS 649
               ++L VHDE+V E        V  +  
Sbjct: 829 VVSRVLLQVHDELVVEIAPNELEQVREIVE 858


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 188/568 (33%), Gaps = 97/568 (17%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
            A  +   + L D  V    H+     ++     GI +          L      PS  +
Sbjct: 380 EAFTAAFREVLEDAAVKKGGHDLKALSLVLAND-GITLHGA--HDDVELLSYLLNPSRRE 436

Query: 111 NACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           +A + L+     T++       EGK                D   A+H    ++   +  
Sbjct: 437 HALVDLSRERLNTELPPLPPAAEGKRGKK------------DRALADHTVE-EVATGFAI 483

Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           R  EA R L   L              D E  L  L   +  RG  +D   + +    + 
Sbjct: 484 R-AEAARRLAPELWKELEAAKLAALARDMELPLLPLLAQMERRGVLLDTAELSRTSVKVD 542

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              +   +++ +       +      L   LF    + ++   +           + +L+
Sbjct: 543 AAVEAQVKEVYRHAGREF-NIGSNPQLVEVLFTELKLPIIKRGKTG--PSADQEVLEKLS 599

Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           ++  L        ++ KL     +TL   V++DGR+  T     A+ TGR S      QN
Sbjct: 600 EEHPLPGAIIEYRSLSKLKSTYLDTLPTLVAADGRIHTTY-HQAATATGRLSSTDPNLQN 658

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R   +A+ G +LV AD + +E R+L
Sbjct: 659 IPVRT------------------------DLGREIRRAFVAAEGHQLVSADYSQVELRLL 694

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG---GAK 446
           A IA +   I+AF + EDI+  T A+ F    ++V +EQR + K++   + Y     G  
Sbjct: 695 AHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVDREQRRVAKMVNFGIAYGLSPHGLG 754

Query: 447 VFKTMASHCGLD-LQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484
               +A     D ++++         + +     +                      +  
Sbjct: 755 ARLGIAQDVARDIIERYFTRYAGIRRYLEETVDRARKTGYVETLYGRRRYMADLNSKNRG 814

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSI 538
           +       A+   + GTA +L+KKA  A  +         ++   + +       +    
Sbjct: 815 VAQAAERAAINMPIQGTAADLIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVE 874

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSR 566
             + +A      +   K  + + + + R
Sbjct: 875 QVKALAVKAMSSVADLKVPLKVEVGAGR 902


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 143/415 (34%), Gaps = 67/415 (16%)

Query: 145 YDCTRANHVQAW----QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           Y    A   + W     L   + K   E T      L   +D E  L  +   +   G  
Sbjct: 424 YRADAAFTCEKWPDAGALADLFAKMKTEITALEEDSLY--NDIEFPLAQVLADMTRIGIL 481

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D + + K    +  E + +   I   T     +      L   LF   G+     ++  
Sbjct: 482 VDKEGIEKFGVKMRSELEDVLTRIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRG 541

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T    L       L +D++  R A        +  L + ++ DGR+        A RT
Sbjct: 542 WSTDAETLEALRDYPLVEDILQYR-AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RT 599

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P +                              +R+  +A  G  LV
Sbjct: 600 GRLSSDNPNLQNIPIRT------------------------ELGSQLRAYFVARPGCVLV 635

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA + G++   +AF  GEDI+ +T AK +  P+++V+   R+  K +  
Sbjct: 636 DADYSQIELRILAHVTGDEHMQQAFLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINF 695

Query: 438 ALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------ 481
            + Y  GA    K            L+ +       S + D   +++             
Sbjct: 696 GIMYGKGAYSLSKDIGVSVKEADAFLKNYLATFPKVSGYMDKTISDARSCGYVSTLFGRR 755

Query: 482 ---------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                    +  ++      A    + GTA +++K A        +++W+ L + 
Sbjct: 756 RSLPELASNNHNIRASGERMARNTPIQGTAADVIKLAM-------VRVWRRLRDE 803


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/546 (16%), Positives = 188/546 (34%), Gaps = 87/546 (15%)

Query: 11  RSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            S   + K          +  +    +  I   A+++ ++ V   D  +      DL + 
Sbjct: 300 WSKVDIKKLIALLQDSKSIAFYPLIYEGEIKKIAFSFGNDTVY-IDGFQI----KDLKEI 354

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN--- 117
              E      H    + ++     GI+  SK ++ T+++A       S  +    L    
Sbjct: 355 FEKEKFEFTTHEIK-DFLVKLSYKGIECKSK-YMDTAIMAYLLNPSESNYDLDRVLKKYL 412

Query: 118 ---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                 +     +G+        G      Y C+R  H+   +        +++  + L 
Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMD-MKRL- 470

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                L + E  L  + +++   G+ +D +++ +L + I     ++ + I K       +
Sbjct: 471 -----LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-N 524

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290
                 L  +LF    + ++  ++    T   +L        +  D+I  R   +     
Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKST 583

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +N     +  + R+    +    + TGR S      QN+P +E                
Sbjct: 584 YINGFLPLMDENNRVHSNFK-QMVTSTGRISSTEPNLQNIPIRE---------------- 626

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   I       +V AD + IE RVLA ++G++  I++F N EDI+
Sbjct: 627 --------EFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
           + T ++ F  P++KV+ E R   K +   + Y     G ++  K         +  + + 
Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFER 738

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            K    + +                       +  S +   + Q    A+   + G+A +
Sbjct: 739 YKGVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAAD 798

Query: 505 LVKKAW 510
           ++K A 
Sbjct: 799 IIKMAM 804



 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 23/203 (11%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523
            + S    +   +  +H    +     F   + + + TA E+ K         + +  K 
Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKA 703

Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR-------DVHIVLPSSRRLVYS 571
           +  G    + + G      IS +           R+K         V     +   +   
Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIM 763

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDI 624
           + +    Y+    S+   +R+   +L  N  +Q  + DI+   M          K    +
Sbjct: 764 NRR---RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLKLKSKL 820

Query: 625 VLTVHDEIVSETPDTPYFSVGTL 647
           +L VHDE+V +T       V  +
Sbjct: 821 ILQVHDELVVDTYKDEVEIVKKI 843


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/510 (15%), Positives = 169/510 (33%), Gaps = 65/510 (12%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWIC 95
           +++E V L+ + E +   S     L+ ET +    ++     L ++    +    +    
Sbjct: 157 FNNEEV-LYLKVEDALEDSYFKNMLKHETSLRT-WDAKEMMHLLQRYGFYVPSFKEDLHL 214

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            + L  +    +    + L +   E           I    K +         R   V  
Sbjct: 215 AAFLLHSQATDTDSLISSLGIELPET----------IHDLLKKAKTVEACHIDRLLPVTC 264

Query: 156 -WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            W       + ++    +    L    + E+ L  +   + ++G  ID +++ ++     
Sbjct: 265 AWTWQLSIRQDNIFDELKKDNLLDLYENIEKPLVRILFEMENQGIHIDENVLDEIGAKTD 324

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              + L + I ++   ++ +      L   L+    +        T   +L     +   
Sbjct: 325 TILESLTQQIHEMA-HMVFNINSPKQLAGVLYDELNLKGGGKKRSTSAEVLEKLKGSHPI 383

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            D++L+    S      +  L + +  D ++         ++TGR S      QN+    
Sbjct: 384 IDVLLDYRKYSKIKSTYIEGLKKHIQQDSKIHTCFN-QAMTQTGRLSSSDPNLQNIS--- 439

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G KL+ AD + IE R+LA +A 
Sbjct: 440 ---------------------VRDEQGREIRKAFVAQKGYKLLSADYSQIELRMLAHMAN 478

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           E   I+AF  G DI+  T +  F+   + V+ + R + K +   + Y     G ++  K 
Sbjct: 479 ETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAKTVNFGIVYGQTEFGLSQQLKI 538

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
                G  ++ +  +  +   F +                       +    +   ++  
Sbjct: 539 SRKEAGEFMETYFASYPNIHQFMNQLIDFCKENGYVETMFHRRRMIPEINDKNFMTREFG 598

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              A+   + G+A +L+K A     Q + +
Sbjct: 599 KRAAMNAPIQGSAADLIKIAMIRVDQAMKE 628


>gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
 gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
          Length = 876

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/573 (15%), Positives = 193/573 (33%), Gaps = 72/573 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +     ++L+ +L +     V +++     +    LGIDI +  +    + 
Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P       +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEVDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              A+   + G+A +++K A     Q +    K+ T     ++Q    +    +  VP+ 
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +      V  ++ ++ +L    +K D SY  T
Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/546 (16%), Positives = 188/546 (34%), Gaps = 87/546 (15%)

Query: 11  RSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            S   + K          +  +    +  I   A+++ ++ V   D  +      DL + 
Sbjct: 300 WSKVDIKKLIALLQDSKSIAFYPLIYEGEIKKIAFSFGNDTVY-IDGFQI----KDLKEI 354

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN--- 117
              E      H    + ++     GI+  SK ++ T+++A       S  +    L    
Sbjct: 355 FEKEKFEFTTHEIK-DFLVKLSYKGIECKSK-YMDTAIMAYLLNPSESNYDLDRVLKKYL 412

Query: 118 ---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                 +     +G+        G      Y C+R  H+   +        +++  + L 
Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMD-MKRL- 470

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                L + E  L  + +++   G+ +D +++ +L + I     ++ + I K       +
Sbjct: 471 -----LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-N 524

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290
                 L  +LF    + ++  ++    T   +L        +  D+I  R   +     
Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKST 583

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++     +  + R+    +    + TGR S      QN+P +E                
Sbjct: 584 YIDGFLPLMDENNRVHSNFK-QMVTSTGRISSTEPNLQNIPIRE---------------- 626

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   I       +V AD + IE RVLA ++G++  I++F N EDI+
Sbjct: 627 --------EFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
           + T ++ F  P++KV+ E R   K +   + Y     G ++  K         +  + + 
Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFER 738

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            K    + +                       +  S +   + Q    A+   + G+A +
Sbjct: 739 YKGVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAAD 798

Query: 505 LVKKAW 510
           ++K A 
Sbjct: 799 IIKMAM 804



 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 23/203 (11%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523
            + S    +   +  +H    +     F   + + + TA E+ K         + +  K 
Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKA 703

Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR-------DVHIVLPSSRRLVYS 571
           +  G    + + G      IS +           R+K         V     +   +   
Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIM 763

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDI 624
           + +    Y+    S+   +R+   +L  N  +Q  + DI+   M          K    +
Sbjct: 764 NRR---RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLKLKSKL 820

Query: 625 VLTVHDEIVSETPDTPYFSVGTL 647
           +L VHDE+V +T       V  +
Sbjct: 821 ILQVHDELVVDTYKDEVEIVKKI 843


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 123/363 (33%), Gaps = 59/363 (16%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            +  L  +   +   G  +D D +  L    AQ    + E I +L      +      + 
Sbjct: 487 IDLPLVPVLAHMERIGALLDTDTLQALGSRTAQNIADISERIYELAGEKF-NIDSPQQVS 545

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297
             LF + G+     +  +         +  L+ +  L  L      + K+     + L +
Sbjct: 546 HILFDVIGLPPRKRT--SRGYSTDAKVLEDLSSEHQLPGLILEYRELAKIMGTYIDALPK 603

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
              +DGRL  +      + TGR S      QN+P +                        
Sbjct: 604 LRGADGRLHTSFN-ETVTTTGRLSSSNPNLQNIPVRT----------------------- 639

Query: 358 GLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R C I  S     V AD + IE R+LA ++G+   I AF +G D +  T A+ 
Sbjct: 640 -EFGRHIRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSATAARV 698

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P+++V+ E R+  K +   + Y     G ++  +         + ++         +
Sbjct: 699 FGVPVEEVTPELRSRAKAVNFGIVYGQQAFGLSQSLRIPFGEAQAMIDRYFTAYPVVRAY 758

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D                       +  +H+   +      A+   + GTA +++KKA  
Sbjct: 759 LDNIVAQAHEKGYALTMFGRKRHIPELRAHNAQQRAFGERIAMNHPMQGTAADIIKKAMV 818

Query: 512 AKH 514
              
Sbjct: 819 EVD 821


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/570 (15%), Positives = 189/570 (33%), Gaps = 103/570 (18%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
              P+   G   +AE+      A                  + + L   L D++V+ +  
Sbjct: 375 CYVPVGHGGKDMFAEKPDQLPLA-----------------LVLAKLKPLLEDDSVLKIGQ 417

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEE-- 127
           N  ++  + ++  GI+I               G  L     +     + +      ++  
Sbjct: 418 NLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAAKTHLNHICISFKDVC 476

Query: 128 --GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
             GK+ I+        +  Y    A+  ++ W+LF        E    +++        +
Sbjct: 477 GTGKSQISFAEVPLDKATEYAAEDADVTLRLWKLFKTRIAN--EGATRVYEL------VD 528

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
           R L  +   +   G ++D + + +L          L+ +I  L      +   T  L   
Sbjct: 529 RPLVSVIAKMEHEGIKVDREALSRLSAEFTAGIAALETEIHGLAGQPF-AIGSTQQLGAI 587

Query: 245 LFLITGIDLVDM----SEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEA 298
           LF   G          +  T  +IL    +   ++A  ++  R  S   +    + L   
Sbjct: 588 LFDKMGYKGGKKGKSGAYSTDVTILEQLKVQGAEIAGKVLDWRQLSKLKST-YTDALQAQ 646

Query: 299 VSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++ D  R+  +    GA +TGR S      QN+P +                        
Sbjct: 647 INRDTSRVHTSYSLSGA-QTGRLSSTDPNLQNIPIRT----------------------- 682

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +A  G  ++ AD + IE R+ A +A      +AFANGEDI+  T  + F
Sbjct: 683 -EVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLF 741

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                +V+++ R   K +  A+ Y     G A   +  A      + ++ +     S + 
Sbjct: 742 G----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQDMISRYYERFPGISLYI 797

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                 + + ++     +      A+   + GT+ +++K+A   
Sbjct: 798 TDTIEKARSKGYTETLFGRKTWFPRIKASVQHERQGAERAAINAPIQGTSADIIKRAMAR 857

Query: 513 KHQGV-------LQLWKDLTEGFACVVQEG 535
               +       +++   + +     + EG
Sbjct: 858 MGPALAAEGLHDVKMLLQVHDELVFELPEG 887


>gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143]
 gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143]
          Length = 877

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/565 (14%), Positives = 181/565 (32%), Gaps = 99/565 (17%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   +L+   +   +   +L+   ++T + V ++    ++L  +     +  + 
Sbjct: 337 FAWSCGD---RLYATDKLELLQEPILKEFLEKTPLKV-YDFKKAKVLLNRF---GLNLQA 389

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
               S LA+               N       +++       + KG   + P        
Sbjct: 390 PAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPER------ 439

Query: 153 VQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202
               + F E+  R V    E    L ++L        L D E+ L  +   +   G ++ 
Sbjct: 440 ----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 495

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +L++Q       ++L ++I +L      +      L + LF   G+ L    +    
Sbjct: 496 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA    + +       I K+ +     L + + +DG++         ++T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQT 613

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 709

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G +             +  + +       + D                 
Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL----------QL 520
                    S +  ++      A+   + G+A +++K A     + ++          Q+
Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQV 829

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
             ++             +  ++   
Sbjct: 830 HDEIVLEVPKAELAAVKVLVKQTME 854


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ E +A++ + +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  S+    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 551


>gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300]
 gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300]
          Length = 889

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/530 (16%), Positives = 177/530 (33%), Gaps = 91/530 (17%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   +L+   ++T + V ++    ++L  +   +D+  + 
Sbjct: 349 FAWSCGD---KLYATDKLELLQEPILKEFLEKTPLKV-YDFKKAKVLLNR---LDLNLQA 401

Query: 93  WICTSVLARTNGLPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               S LA+              A  + +     +E       + KG   + P       
Sbjct: 402 PAFDSRLAKYLLSTVENNEISTIANLYGQTYLADDEI-----FYGKGVKKAIPER----- 451

Query: 152 HVQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRI 201
                + F E+  R V    E    L ++L        L D E+ L  +   +   G ++
Sbjct: 452 -----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
             + +L++Q       +KL ++I +L      +      L + LF   G+ L    +   
Sbjct: 507 KKETLLEMQAENELIIEKLTQEIYELAGEKF-NINSPKQLGVLLFEKLGLPLEYTKKTKT 565

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316
               +   + +LA    + +       I K+ +     L + +  DG++         ++
Sbjct: 566 GYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQ 624

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   +       
Sbjct: 625 TGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSV 660

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K 
Sbjct: 661 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 720

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474
           +   + Y     G +             +  + +       + D                
Sbjct: 721 VNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLF 780

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                     S +  ++      A+   + G+A +++K A     + +++
Sbjct: 781 KRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%)

Query: 157 QLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           + F E+  R V    E    L ++L        L D E+ L  +   +   G ++  + +
Sbjct: 452 EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETL 511

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       ++L ++I +L      +      L + LF   G+ L    +       +
Sbjct: 512 LEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 570

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + +  DG++         ++TGR S
Sbjct: 571 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQTGRLS 629

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 630 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 665

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 666 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 725

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +             +  + +       + D                     
Sbjct: 726 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 785

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                S +  ++      A+   + G+A +++K A     + +++             + 
Sbjct: 786 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQ--------TKM 837

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    V  VP+  +   K  V   +  + +L    +  +        ++
Sbjct: 838 LLQVHDEIVLEVPKSELAAVKALVKQTMEEAIQLSVPLIADENEGATWYEAK 889


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/517 (15%), Positives = 164/517 (31%), Gaps = 93/517 (17%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             E      + L+ L + T   + HN+     +  K   +DI    ++  + +A      
Sbjct: 356 FEENEEKSKEYLKKLFENTSEKIIHNAKNLFTVLSK---LDIDINNFVFDTEIAAYLIES 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           S  +     L  +      ++    I                 +N    +Q   E  K  
Sbjct: 413 SDKEYTLKTLFETYLHETYQDISQEI-----------------SNLSNLYQRLKEKIK-- 453

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                ++   L  +   E  L  +   +   G+++D + + +L+E    E     ++I +
Sbjct: 454 ---ELQMEDLLYKI---ELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYE 507

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           +      +      L   LF    + ++  ++    T   +L          D I     
Sbjct: 508 MAGEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKITYYRQ 566

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            +      +  L   +  DGR+  +      + TGR S      QN+P +          
Sbjct: 567 LTKLNSTYVEGLIHVIDQDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY--------- 616

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + ++ + L+  AD + IE RVLA +A ++    A+
Sbjct: 617 ---------------EMGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKTAY 661

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLD 458
               DI+  T ++ FN P+D+V+KE+R+  K +   + Y           K         
Sbjct: 662 LEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVYGISDFALSEDLKISKKEAKQY 721

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDK 497
           +  +         +     A++      +                          A+   
Sbjct: 722 IDTYFSRYPKVKEYISSTIAKAEKELYVNTIFNRRRFIPEITSSNKIVKALGDRLAMNAP 781

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           + G+A +++K A             K   +LQ+  ++
Sbjct: 782 IQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEI 818



 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 17/202 (8%)

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +   +  E+ + A   H+ +  +         L     E    A +A + G++     ++
Sbjct: 648 LAHMADDENMKTAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAA-KAVNFGIV---YGIS 703

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYLNT 582
           +       +     A++  +       + K  +   +  + + +Y +    +       T
Sbjct: 704 DFALSEDLKISKKEAKQYIDTYFSRYPKVKEYISSTIAKAEKELYVNTIFNRRRFIPEIT 763

Query: 583 ATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSE 635
           +++++++    G +L  N  +Q  + DI+   M N        K    ++L VHDEI+  
Sbjct: 764 SSNKIVK--ALGDRLAMNAPIQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEIILN 821

Query: 636 TPDTPYFSVGTLCSL-MTKNPS 656
                  +V  L    M     
Sbjct: 822 VYKDELETVKELVKKEMESVID 843


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 195/519 (37%), Gaps = 99/519 (19%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTS--VLARTNGLP 106
                +++ +   DE ++  + +   + +L  K LGID       I     ++  +    
Sbjct: 351 DEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGALPYDDIMLMHYLIDPSRSSY 409

Query: 107 SSLKNACLALNFSEHLTKM--EEGKALIAR----FCK-----GSIDSPPYDCTR--ANHV 153
                +   L++  +  +    +GK  +      F K      S  +  YD      + +
Sbjct: 410 DMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDKLGNFMASEINAIYDAKDKLVDKL 469

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             +               +L+K      + E +L  +   +   G+  D  ++ +L+E I
Sbjct: 470 NEYH------------MYDLYK------EIEIELSKVLADMEIVGFVTDRKVLEELKEGI 511

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS---- 266
             +  +L ++I +L+     +   T  L   LF    + ++  ++    T  S+L     
Sbjct: 512 DADIDELTQEIYELSGSEF-NINSTKQLGEVLFKDLELPVIKKTKTGFSTDASVLEKLRD 570

Query: 267 -HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            H  I ++ +   L +L S+      +  L +A+  DGR+R T +   A+ TGR S    
Sbjct: 571 KHQIIPKIERYRELFKLRSTY-----IEGLEKAIDYDGRIRSTFRQNIAA-TGRLSSQDP 624

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QNLP +                              +R    A  GK L+ AD + IE
Sbjct: 625 NLQNLPIKT------------------------DEGRLIRKAFKAEEGKILIDADYSQIE 660

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            R+LA ++G++  I AF N +DI+  T +K F+TP+++V+K QR+  K +   + Y    
Sbjct: 661 LRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYGISD 720

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G ++            +  +  +  S   + D                       +  S
Sbjct: 721 YGLSQNLNISRKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLFKRRRYVPEINS 780

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  ++      A+   + GTA +++K A    ++ + +
Sbjct: 781 RNFNVRSFGQRVALNTPIQGTAADIIKIAMIETYKNLKK 819



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M          K    I+L +HDEI+ E        
Sbjct: 786 RSFGQRVALNTPIQGTAADIIKIAMIETYKNLKKEKIDAKIILQIHDEIILEASKEDEDR 845

Query: 644 VGTL 647
              +
Sbjct: 846 AIEI 849


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 114/683 (16%), Positives = 207/683 (30%), Gaps = 169/683 (24%)

Query: 2   SKLFIDIETRSPQPLPK--VGV-WAYAEQA-VITLCAYAWDDEPVKLWDRTEQSAM-PSD 56
             + ID ET S  P     VG+ + + E    I        ++   L +  + + +   +
Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEINQINQLKIEE 444

Query: 57  LLQYLRD----ETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLP 106
           ++  L+D            N+ ++R++  +       + +D     +IC + L       
Sbjct: 445 VIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGVVMDTLLADYICDATLKH----- 499

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            SL        + E   K +    ++ +   F    I S                   YC
Sbjct: 500 -SLDEIA----YREFGFKPKSFSDIVKKGEDFSYVDIKSA----------------SMYC 538

Query: 164 KRDVEATRELF------------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             DV  TR+L             K +  L + E+ L  +   I   G  ID   +  L  
Sbjct: 539 GMDVYLTRKLAIIYINRLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSL 598

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + +    +++++  +       S     L   LF    +D     +         + + 
Sbjct: 599 ELTKRLNTIEKEVYNIAGSEFNLS-SPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLE 657

Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVF 325
           +L  D  + ++      I KL     + L + +    GR+         + TGR S    
Sbjct: 658 KLESDHPIVKIIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFN-QAVTATGRLSSSNP 716

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P +                           S  +R   +     KL+ AD + IE
Sbjct: 717 NLQNIPVRT------------------------EFSRRIRKAFLPQKDWKLLSADYSQIE 752

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+L  ++GE+    A+   ED++  T    F    D +  ++R IGK +   + Y  GA
Sbjct: 753 LRILTHLSGEEVLKNAYLKNEDVHSLTAKILFEK--DAIDADERRIGKTINFGVIYGMGA 810

Query: 446 KVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
           + F              L +F +   +   F +++                A+    + T
Sbjct: 811 QRFARSTGVSLIEAKYFLSKFKERYPAVFKFLEYQ-------------ERLALSQGFVET 857

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                                                         R     +K  +   
Sbjct: 858 LL------------------------------------------GRRRYFHFNKNGL--- 872

Query: 562 LPSSRRLVYSDVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
               R L     + D +    A   +Q +R            +Q  S DI+   M     
Sbjct: 873 ---GRLLGTPPNEIDLTTARRAGMEAQQLRAAANAP------IQGSSADIIKLAMIQLHS 923

Query: 620 N------GYDIVLTVHDEIVSET 636
                     I+L VHDE+V E 
Sbjct: 924 ALRETGLAAKILLQVHDELVLEV 946


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 127/405 (31%), Gaps = 70/405 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G   D      +   +  + +KL   I +       +      L 
Sbjct: 459 IENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYEAAGEEF-NVNSPKQLG 517

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297
           + LF   G+     ++       +   +  LAK     +       I KL       L  
Sbjct: 518 VILFEKMGMPAGKKTKNG--YSTAADVLEMLAKSYPFVKDILEYRTISKLISTYLEALPL 575

Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            +    GR+  +      + TGR S      QN+P +                       
Sbjct: 576 LIRPETGRIHTSFN-QTVTATGRLSSSDPNLQNIPVRT---------------------- 612

Query: 357 LGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +RS  +   G    + +D + +E RVLA ++G++  I+AF N EDI+  T A+
Sbjct: 613 --AEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRTAAE 670

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
               P ++V+ EQR+  K +   + Y     G A          G  ++++ +       
Sbjct: 671 VLGIPFEEVTSEQRSHAKAVNFGIIYGISDFGLANQLGISRGEAGTYIKKYFERYPYIHA 730

Query: 472 FE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F                      +     S +   +      A+   + GTA +++K A 
Sbjct: 731 FMKSMVEDAQESGRAKTLFGRYRELPDIRSSNFNRRSFAERTAMNTPIQGTAADIMKLAM 790

Query: 511 RAKHQGV----------LQLWKDLTEGFACVVQEGGSISARRVAN 545
               + +          LQ+  +L        +E      +    
Sbjct: 791 IEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKTLLKETME 835



 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+   M    +   + GY   ++L VHDE+V E       ++ TL
Sbjct: 778 IQGTAADIMKLAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKTL 829


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/597 (16%), Positives = 190/597 (31%), Gaps = 110/597 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60
           ID ET         G+  + +   I   ++A         D + ++ +  D     +   
Sbjct: 354 IDFET--------TGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDT 403

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L  E +  + HN  +E  +  + +G  I +  +  T V A     P+  +     L    
Sbjct: 404 LEKEDIKVIGHNLKYEYKMM-RAIGKSIGNM-YFDTMV-AAYLINPTRGRYNMDDL---- 456

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLI 178
                      IA     +I            +    L    EY   D + T   ++   
Sbjct: 457 ----------AIAYLSYNTIKYADLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFA 506

Query: 179 PLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           PL           + E  L  +   +   G  I  + +  L +  +   +K  E I K  
Sbjct: 507 PLLKTHNLEDLFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYKEA 566

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                + +    L   LF   GI     ++    T + +L+  +      + +L     +
Sbjct: 567 GEEF-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYA 625

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 L+     ++   GR+  +      + TGR S      QN+P             
Sbjct: 626 KLKNTYLDVFPTLINEKTGRIHASFN-QTVTATGRLSSSEPNLQNIP------------- 671

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                        G     +R+  I   G  L+ AD + IE R+LA  + +   ++AF N
Sbjct: 672 -----------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKN 720

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            +DI+  T  K ++   + V+   R I K++  ++ Y     G +K            ++
Sbjct: 721 NDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIK 780

Query: 461 QFSQNVKSTSTFEDWEQAE----------------------SHHLWMQDQYPEFAVKDKL 498
            +         F +    E                      S +   +++    A+   +
Sbjct: 781 GYFSTYSRVKPFCEEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLI 840

Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
            G+A +++K A  A H+           V+Q+  +L    +    +      + +  
Sbjct: 841 QGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIME 897



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650
              ++Q  + D++   M    K          IV+ VHDE+V E  +       T+   +
Sbjct: 836 LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEI 895

Query: 651 M 651
           M
Sbjct: 896 M 896


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/558 (15%), Positives = 176/558 (31%), Gaps = 99/558 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVIT-----------LCAYAWDDEP----VKLWDRTEQ 50
           ID E  +   + +      A+                + A+AW +       K  D   +
Sbjct: 310 IDFEIVTDGSISEK---VNADDFFYLETLGENYHREQIVAFAWGNAEKIYVSKNIDLLTK 366

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
              P +   + ++             R+L      +DI        ++LA+     +   
Sbjct: 367 MKFPENTYDFKKN-------------RVLLSH---LDIELPLVKFDAMLAKYLISTTEDN 410

Query: 111 NACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                     S HL   EE       F KG+  + P D     H+          K  + 
Sbjct: 411 KISTIARLFNSGHLATDEEI------FGKGTKIALPDDAVLFEHLARKIKVLALAKEKMM 464

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           A     ++   LSD E  L  +   +   G  +  + + ++     ++   L  +I  L 
Sbjct: 465 AELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLA 524

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF    + +   ++      +  +   + ++ +   ++  R  +
Sbjct: 525 GEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQIN 583

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              +   +  L   ++ DG++         ++TGR S      QN+P             
Sbjct: 584 KVQST-YVKGLIPQIADDGKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------- 628

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   + S    L+ +D + IE RVLA I+G++  I AF +
Sbjct: 629 -----------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKH 677

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+ +T  + F     + V+   R   K +   + Y     G A+            +
Sbjct: 678 GADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYI 737

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           + + +      T+ +                          + +  ++      A+   +
Sbjct: 738 ETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPI 797

Query: 499 IGTACELVKKAWRAKHQG 516
            G+A +++K A     + 
Sbjct: 798 QGSAADILKIAMINLDKA 815


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/521 (18%), Positives = 164/521 (31%), Gaps = 94/521 (18%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           YA  D  V  +  +E      +L+  L D  V       +F+           + +  W 
Sbjct: 347 YAVQDTTV--YPLSE-----EELVSLLDDPKVTL----DVFDSAPL---YARAMAAGSWG 392

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            + V      L + L +A  +      L       A  A  C+   D+            
Sbjct: 393 SSIVWD--GKLAAYLLDASASHYLLTTLA--TSYHARSAFSCEEYPDAG----------- 437

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              L   + K   E T      L   ++ E  L  +   +   G  +D + +      + 
Sbjct: 438 --FLADLFAKMKAEITENGEDDLY--NNIEFPLAQVLADMTRTGILVDREGIEAFGVQLR 493

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271
           QE  ++   I         +      L   LF   G+     ++    T    L      
Sbjct: 494 QELDQVLTRIEMEAGTSDFNPNSPKQLGTLLFDTMGLPHGKKTKNGWSTDAETLEKLRDI 553

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L +D++  R A        +  L + +  DGR+        A RTGR S      QN+P
Sbjct: 554 PLVEDILQYR-ACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP 611

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R+  +A  G  LV AD + IE R+LA 
Sbjct: 612 IRT------------------------EMGSKLRAYFVAKPGCVLVDADYSQIELRILAH 647

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KV 447
           + G+    +AF +G DI+ +T AK +N   + V+   R+  K +   + Y  GA    K 
Sbjct: 648 VTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGAYSLSKD 707

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------ 489
                      LQ +     +   + +   A++                           
Sbjct: 708 IGVSVKEAEAFLQTYLATFPNIDGYMEKTIADARQCGYVSTLFGRRRALPELNSNNHNIR 767

Query: 490 ---PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                 A    + GTA +++K A        +++W+ L   
Sbjct: 768 ASGERMARNTPIQGTAADVIKLAM-------VRVWRRLRNE 801


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/556 (15%), Positives = 170/556 (30%), Gaps = 100/556 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L  ++ D        NS F+R +F       +  K     ++LA              
Sbjct: 437 SKLRNWIEDPKKEKALQNSKFDRQIF---FNHGLILKGVTFDTLLADYLLNNQEKHGLSE 493

Query: 115 A----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                  F     K   GK     F      S           +  ++F E   ++ +  
Sbjct: 494 ISFRLFGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKERFSKEKDEL 553

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +LF+      + E  L  +   +   G  ID+  + KL + +    + ++  + +L + 
Sbjct: 554 IKLFE------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEE 607

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S     L   LF    +D     +           + +L  +  + +       + 
Sbjct: 608 NFNLS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLS 666

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   ++   GR+        A+ TGR S      QN+P +           
Sbjct: 667 KLLSTYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT---------- 715

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                           S  +R   +     KL+ AD + IE R+LA +A E+  I AF  
Sbjct: 716 --------------EFSRRIRKAFLPEKNCKLLSADYSQIELRILAHLADEEILINAFHK 761

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQ 460
            +DI+  T    F    +++S ++R +GK +   + Y  G K F              L 
Sbjct: 762 NDDIHSLTARLIFEK--EQISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLI 819

Query: 461 QFSQNVKSTSTFEDWEQ---------------------------------------AESH 481
           ++ +       F + ++                                         + 
Sbjct: 820 KYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSAR 879

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACV 531
              M+ Q    A    + G++ +++K A    ++           +LQ+  +L       
Sbjct: 880 RAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEQD 939

Query: 532 VQEGGSISARRVANVP 547
             E  +   ++     
Sbjct: 940 SLEITTKLVKKTMEDC 955


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/538 (16%), Positives = 172/538 (31%), Gaps = 78/538 (14%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           V+L D + +      L Q+L  +T     H +     +     G  I        + LA 
Sbjct: 368 VELGDLSAED--DKALAQWLASDTP-KYFHEAKAAFHMLA---GRGIELAGIAHDTALAA 421

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
               P   +   LA  +  HL K                +S   D   A           
Sbjct: 422 YLLRPGQ-RTYALADVYQRHLQKTLSAATEQLSLLD---NSSLVDQAAA---------IM 468

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                + A  +        +D E  L  +   +   G  +D+D++   ++   ++  + +
Sbjct: 469 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 528

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L      +      L+  LF    +     ++    +                  
Sbjct: 529 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 588

Query: 282 LASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              +     K    L  L + V  DGR+  T     AS TGR S      QN+P +  + 
Sbjct: 589 HLLAHRKYQKMKTTLEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA- 646

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396
                                     +RS  I  +G  +L+ AD + IE RV+A ++ + 
Sbjct: 647 -----------------------GRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADP 683

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+A+  GED++    ++ F+ P+D+V+ E R   K M   L Y     G ++     A
Sbjct: 684 GLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPA 743

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 ++ + +       + D   A++                      +   ++    
Sbjct: 744 GEAKSIMESYFERFGGVKKYLDEVVAQARKDGYTATLFGRRRYLPELNSDNRLARENAER 803

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545
            A+   + GTA +++K A     + +     ++   + +     V  G +   R +  
Sbjct: 804 AALNAPIQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 861


>gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 876

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/514 (15%), Positives = 168/514 (32%), Gaps = 63/514 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               +    +      +L+ +L +     V +++     +    L IDI +  +    + 
Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNTKKVVYDAKK-TYVASHRLEIDIQNISF-DIMLA 398

Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       ++ +    ++ + +   K +     ++ + KG     P D     +V +   
Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              + K +++   E + ++  L+D E  L  +   + + G   D+  + ++++ I ++  
Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L  +I         +      L + LF    + ++  ++    T   +L          
Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           D IL     S      +  L + +S D R+        A +TGR S      QN+P    
Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R      S    ++ AD + IE RVLA I  
Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++   +AF NG+DI+  T  K F    D+V    R   K +   + Y     G ++    
Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   +  +  +      +                            S +  ++   
Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              A+   + G+A +++K A     Q + +    
Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
           A   K+ G   + V    R +    + G++     +++             A+   +   
Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606
                 K+ +  ++  ++ L Y +       Y+   TS+    R +  +   N  +Q  +
Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
            DI+   M    +          ++L VHDE++ E P +   S    +  +M
Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 111/617 (17%), Positives = 206/617 (33%), Gaps = 119/617 (19%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--------S 108
           L   L +        N+ F+R++FK   GI++     +  ++LA     P         S
Sbjct: 439 LRPILENANYPKTFQNAKFDRLIFK-CQGINLV--GVVFDTMLASYLINPDTTHNLSDLS 495

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L+N  L L     +      K L        ID   Y C    +   +QL  +     + 
Sbjct: 496 LRNLGLQLTEYNDIVTKTGKKELQKNIADIGIDIVAYYCGTQVYA-TFQLVDKLRCE-LN 553

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            T +L K L+   + E+ L  +   +   G RI+   + +L + +  E  KL+    ++ 
Sbjct: 554 KTPDLAKLLV---EVEQPLEAVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEIA 610

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLILNR 281
                +      L   LF   G+      +         + + +L +       D I+  
Sbjct: 611 SEKF-NLDSPKQLSYILFDKLGLSTKYSRKIQTGYSTDAATLEKLQEVDNTGFVDAIIEY 669

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             SS      ++ L   V     RL        A+ TGR S      QN+P +       
Sbjct: 670 RTSSKLKSTYVDALPALVHPQSQRLHTDFN-QTATSTGRLSSSNPNLQNIPIRT------ 722

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +  +G  +V AD + IE R+LA ++ E   ++
Sbjct: 723 ------------------AFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQ 764

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A+   EDI+  T    F    D+V+ E+R   K +   + Y  G+      A   G+D  
Sbjct: 765 AYKQNEDIHTVTAKLVFEK--DEVTSEERRFAKTINFGVIYGMGS---LKFARSTGVDKA 819

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             ++ ++  +  E + Q  ++   ++                 E + + +     G  + 
Sbjct: 820 NANEFIRRFN--ERYPQVFAYLEKVKK----------------EAISQGYVETILGRRRY 861

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY- 579
           +   ++    +                                  + +   D+       
Sbjct: 862 FDFTSKSLKEL----------------------------------KGISLEDIDLSRLKN 887

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSE 635
           L    + L+R            +Q  S DI+   M    +    Y   ++L VHDE+V E
Sbjct: 888 LGAYNAGLLRSAANAP------IQGSSADIIKIAMVQLHEVLRNYQARLLLQVHDELVFE 941

Query: 636 TPDTPYFSVG-TLCSLM 651
            P   +  +   + S+M
Sbjct: 942 VPPQEWGELQLQIKSVM 958


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 149/477 (31%), Gaps = 76/477 (15%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
            +   ++F  +  R V+   E  + ++           L D E  L  +   +   G ++
Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           + + +  +Q        +L ++I +L      +      L   LF   G+ L    +   
Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEEMGLPLEYTKKTKT 554

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316
               +   + +LA    +         I KL +     L +A+  DG++         ++
Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   + S     
Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F     + V+   R   K 
Sbjct: 650 LLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 709

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475
           +   + Y     G +             +  + +       + +                
Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769

Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                     S +  +++     A+   + G+A +++K A     + + +          
Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    +    V  VP   +   K  V   + S+  L    +  +        ++
Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVPLIADENEGSTWYEAK 878



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  K          ++L VHDEIV E P     +V  +    M   
Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857

Query: 655 PSWAKGLPLKAE 666
            S    +PL A+
Sbjct: 858 IS--LSVPLIAD 867


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 135/414 (32%), Gaps = 58/414 (14%)

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG+  + P       H+          +  +    +   +L  L D E+ L  +   +
Sbjct: 432 YGKGAKKAIPEKTALLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G +++   +  +Q       ++L ++I +L      +      L + LF   G+ L 
Sbjct: 492 EIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLGLPLE 550

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
              +       +   + +LA    +         I K+ +     L + +  DG++    
Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P                                +R   +
Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645

Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN    + V+  
Sbjct: 646 PEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPN 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473
            R   K +   + Y     G +             ++ + +       +           
Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765

Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                      +     S +  ++      A+   + G+A +++K A     Q 
Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    +   +  Y    +L VHDEIV + P     ++  L    M   
Sbjct: 801 IQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA 860

Query: 655 PSWAKGLPLKAE 666
              A  +PL+A+
Sbjct: 861 IELA--VPLEAD 870


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 89/556 (16%), Positives = 170/556 (30%), Gaps = 100/556 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S L  ++ D        NS F+R +F       +  K     ++LA              
Sbjct: 437 SKLRNWIEDPRKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSE 493

Query: 115 A----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                  F     K   GK     F      S           +  ++F E   ++ +  
Sbjct: 494 ISFRLFGFKPPSFKETVGKNKDFSFVDIGEASIYCGYDVFLTFKIVKIFKERFSKEKDEL 553

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +LF+      + E  L  +   +   G  ID+  + KL + +    + ++  + +L + 
Sbjct: 554 IKLFE------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEE 607

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               S     L   LF    +D     +           + +L  +  + +       + 
Sbjct: 608 NFNLS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLS 666

Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KL     + L   ++   GR+        A+ TGR S      QN+P +           
Sbjct: 667 KLLSTYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT---------- 715

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                           S  +R   +     KL+ AD + IE R+LA +A E+  I AF  
Sbjct: 716 --------------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHK 761

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQ 460
            +DI+  T    F    +++S E+R +GK +   + Y  G K F              L 
Sbjct: 762 NDDIHSLTARLIFEK--EQISSEERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLI 819

Query: 461 QFSQNVKSTSTFEDWEQ---------------------------------------AESH 481
           ++ +       F + ++                                         + 
Sbjct: 820 KYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSAR 879

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACV 531
              M+ Q    A    + G++ +++K A    ++           +LQ+  +L       
Sbjct: 880 RAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEQD 939

Query: 532 VQEGGSISARRVANVP 547
             E  +   ++     
Sbjct: 940 SLEITTKLVKKTMEDC 955


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/558 (15%), Positives = 176/558 (31%), Gaps = 99/558 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVIT-----------LCAYAWDDEP----VKLWDRTEQ 50
           ID E  +   + +      A+                + A+AW +       K  D   +
Sbjct: 310 IDFEIVTDGSISEK---VNADDFFYLETLGENYHREQIVAFAWGNAEKIYVSKNIDLLTK 366

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
              P +   + ++             R+L      +DI        ++LA+     +   
Sbjct: 367 MKFPENTYDFKKN-------------RVLLSH---LDIELPLVKFDAMLAKYLISTTEDN 410

Query: 111 NACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                     S HL   EE       F KG+  + P D     H+          K  + 
Sbjct: 411 KISTIARLFNSGHLATDEEI------FGKGTKIALPDDAVLFEHLARKIKVLALAKEKMM 464

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           A     ++   LSD E  L  +   +   G  +  + + ++     ++   L  +I  L 
Sbjct: 465 AELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLA 524

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF    + +   ++      +  +   + ++ +   ++  R  +
Sbjct: 525 GEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQIN 583

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              +   +  L   ++ DG++         ++TGR S      QN+P             
Sbjct: 584 KVQST-YVKGLIPQIADDGKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------- 628

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   + S    L+ +D + IE RVLA I+G++  I AF +
Sbjct: 629 -----------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKH 677

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+ +T  + F     + V+   R   K +   + Y     G A+            +
Sbjct: 678 GADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYI 737

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           + + +      T+ +                          + +  ++      A+   +
Sbjct: 738 ETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPI 797

Query: 499 IGTACELVKKAWRAKHQG 516
            G+A +++K A     + 
Sbjct: 798 QGSAADILKIAMINLDKA 815


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 149/477 (31%), Gaps = 76/477 (15%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
            +   ++F  +  R V+   E  + ++           L D E  L  +   +   G ++
Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           + + +  +Q        +L ++I +L      +      L   LF   G+ L    +   
Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEEMGLPLEYTKKTKT 554

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316
               +   + +LA    +         I KL +     L +A+  DG++         ++
Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   + S     
Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F     + V+   R   K 
Sbjct: 650 LLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 709

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475
           +   + Y     G +             +  + +       + +                
Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769

Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                     S +  +++     A+   + G+A +++K A     + + +          
Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    +    V  VP   +   K  V   + S+  L    +  +        ++
Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVPLIADENEGSTWYEAK 878



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  K          ++L VHDEIV E P     +V  +    M   
Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857

Query: 655 PSWAKGLPLKAE 666
            S    +PL A+
Sbjct: 858 IS--LSVPLIAD 867


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/501 (16%), Positives = 174/501 (34%), Gaps = 71/501 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W L   + 
Sbjct: 407 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ E +A++ + +++ 
Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 517

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT-QLAKDLIL 279
           I +L      +      L + LF    + ++  S+    T   +L       ++ ++++ 
Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILQ 576

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           +           +  L + V  D +   T+     ++TGR S      QN+P +      
Sbjct: 577 HYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------ 630

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWK 398
                                   +R   + S    L+  AD + IE RVLA IA +D  
Sbjct: 631 ------------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNL 672

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           ++AF    DI+  T    F    D+V+   R   K +   + Y     G A+        
Sbjct: 673 MEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKE 732

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               ++++ ++      + +                          S +  ++      A
Sbjct: 733 AAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMA 792

Query: 494 VKDKLIGTACELVKKAWRAKH 514
           +   + G+A +++KKA    +
Sbjct: 793 MNTPIQGSAADIIKKAMIDLN 813



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 686 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 745

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 746 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 805

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 806 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 848


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 91/534 (17%), Positives = 176/534 (32%), Gaps = 76/534 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E+  +P  L + L  E V    +N   E    K      I   +    S LA+    PS 
Sbjct: 343 EEENIPK-LKELLERENVFIYGNNLKREYTALK---PYGITLPKISFDSQLAQYILNPSE 398

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF---GEYCKR 165
           ++     +     +  +     L     KG          R    + +        +CK 
Sbjct: 399 VEQEPEKIGIKYGMPIVSPN--LEDLLGKGKKRMSFSMANRVQMDEYFAKILAIISHCKT 456

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +    +           E  L  +   +   G  ++ D++ +L++  A+   + +++I 
Sbjct: 457 KMLDMIQEEDTKFLFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIY 516

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            L      +      L + LF    + ++  ++           + +L     +     S
Sbjct: 517 DLAGEEF-NINSPKQLGVVLFEKLQLPVIKKTKTG--YSTGAEILEKLYDKHPIISKILS 573

Query: 286 GSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEE 338
              + KL +     L   ++    R+  T      + TGR S      QN+P R E   E
Sbjct: 574 YRQVSKLQSTYVIGLLSLINPTSKRIHSTFN-QTLTTTGRISSLEPNLQNIPVRTEMGRE 632

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  G  LV AD + IE RVLA +A E   
Sbjct: 633 -------------------------LRKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKM 667

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+ F    DI+  T ++ F+ P+++V+KE R+  K +   + Y     G +         
Sbjct: 668 IEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFGIVYGISDFGLSNNLNITKKQ 727

Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493
               +  +        T+ D                       + +S +  +++     A
Sbjct: 728 AKEYIDLYFARYPGIKTYMDTIVKEVEELGYSTTLCGRRRYIPEIKSSNFIVKNMGKRLA 787

Query: 494 VKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +   + G+A +++K A      W    +   +L   + +     V+E  +   R
Sbjct: 788 MNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDELLLEVREDDAKYVR 841


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/558 (15%), Positives = 176/558 (31%), Gaps = 99/558 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVIT-----------LCAYAWDDEP----VKLWDRTEQ 50
           ID E  +   + +      A+                + A+AW +       K  D   +
Sbjct: 310 IDFEIVNDGSISEK---VNADDFFYLETLGENYHREQIVAFAWGNAEKIYVSKNIDLLTK 366

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
              P +   + ++             R+L      +DI        ++LA+     +   
Sbjct: 367 MKFPENTYDFKKN-------------RVLLSH---LDIELPLVKFDAMLAKYLISTTEDN 410

Query: 111 NACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                     S HL   EE       F KG+  + P D     H+          K  + 
Sbjct: 411 KISTIARLFNSGHLATDEEI------FGKGTKIALPDDAVLFEHLARKIKVLALAKEKMM 464

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           A     ++   LSD E  L  +   +   G  +  + + ++     ++   L  +I  L 
Sbjct: 465 AELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLA 524

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF    + +   ++      +  +   + ++ +   ++  R  +
Sbjct: 525 GEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQIN 583

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              +   +  L   ++ DG++         ++TGR S      QN+P             
Sbjct: 584 KVQST-YVKGLIPQIADDGKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------- 628

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   + S    L+ +D + IE RVLA I+G++  I AF +
Sbjct: 629 -----------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKH 677

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+ +T  + F     + V+   R   K +   + Y     G A+            +
Sbjct: 678 GADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYI 737

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           + + +      T+ +                          + +  ++      A+   +
Sbjct: 738 ETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPI 797

Query: 499 IGTACELVKKAWRAKHQG 516
            G+A +++K A     + 
Sbjct: 798 QGSAADILKIAMINLDKA 815


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 192/620 (30%), Gaps = 141/620 (22%)

Query: 61  LRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           L          N+ ++R++  +       + +D     ++  +       L +       
Sbjct: 469 LASSDHPKALQNAKYDRLILLRHGLTLGGVVMDTLLADYLRDAAAKHGLDLMAQRDYGIT 528

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              F++ + K ++GKA  + F    +D                    YC  DV  TR L 
Sbjct: 529 PTLFTDLVGKAKDGKA--SSFAAVPVDQAA----------------LYCAMDVHLTRRLA 570

Query: 175 -----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                      ++L  L +  E  L  +   +   G RID+  + +L   +    ++L+ 
Sbjct: 571 LDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQELSAELGATLERLET 630

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
           +   +       +     L   LF   G++               + + +L  D  +  L
Sbjct: 631 EAQDVVGTSFNLA-SPKQLGELLFDTLGLNRKKSRRTKTGWSTDATVLEKLEGDHPVVPL 689

Query: 283 ASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL       L + V +  GR+         + TGR S      QN+P +   
Sbjct: 690 LLEHRVLSKLKSTYVEALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVRT-- 746

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                   S  +R   +   G +L+ AD + IE R+L  ++GE+
Sbjct: 747 ----------------------EFSRRIRKAFLPQEGWQLLSADYSQIELRILTHLSGEE 784

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              +A+ +G+D++  T         D+VS ++R +GK +   + Y  GA+          
Sbjct: 785 VLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIYGMGAQ---------- 832

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                              FA +  +     +     ++ ++  
Sbjct: 833 ----------------------------------RFARETGVSQVVAKDFLAKYKQRYPK 858

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYSDVK 574
           V    +               +  RR  +  R  + R   K  + I L  +RR       
Sbjct: 859 VFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARR------- 911

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTV 628
                     +Q +R            +Q  S DI+   M               ++L V
Sbjct: 912 ------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTALQQQGLPAQLLLQV 959

Query: 629 HDEIVSETPDTPYFSVGTLC 648
           HDE+V E       +V  L 
Sbjct: 960 HDELVLEVEPAALDTVRQLV 979


>gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 875

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 80/510 (15%), Positives = 163/510 (31%), Gaps = 64/510 (12%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   A  D     +   E +A    L ++L D + +    +S   +   K+  GI +   
Sbjct: 331 LLGMALSDGTKTQYIPFEIAAKSDILRRWLEDSSKIKYMSDSKASKAALKRA-GIQLAGV 389

Query: 92  RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            +    VLA     P  S  +       +  L   +          KG+  + P     A
Sbjct: 390 DF--DLVLASYINNPGLSGDDVAT---LARELGYYDVQADETVY-GKGAKRAVPEIDKLA 443

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            HV          +  +EA  +  ++     + E  L  +   +   G  ++   + K+ 
Sbjct: 444 QHVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMESEGITVNRATLEKMG 503

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
           + +  +   L+++I         +      L + LF   G+ ++  ++    T   +L  
Sbjct: 504 QELNDKLVVLEQEIYAEAGETF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEK 562

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                   + IL            +  L + +   D ++    Q    + TGR S     
Sbjct: 563 LKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQ-QALTATGRLSSTDPN 621

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            QN+P +                              +R   + S     L  AD + IE
Sbjct: 622 LQNIPIR------------------------LEEGRKIRQAFVPSKEDWILFSADYSQIE 657

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA ++ +   ++AF  G D++  T    F+   ++V    R   K +   + Y    
Sbjct: 658 LRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIVYGISD 717

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G ++            ++++  +      + D                          S
Sbjct: 718 YGLSQNLDITRKEAATFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITS 777

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +  ++      A+   + G+A +++KKA 
Sbjct: 778 SNFNLRSFAERTAMNTPIQGSAADIIKKAM 807



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  +   +M   
Sbjct: 795 IQGSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENA 854

Query: 655 PS 656
             
Sbjct: 855 IE 856


>gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
 gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
          Length = 889

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/529 (15%), Positives = 178/529 (33%), Gaps = 89/529 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   + +   ++T + V ++    ++L  + LG+++ +  
Sbjct: 349 FAWSCGD---KLYATDKLELLQEPIFKEFLEKTSLKV-YDFKKAKVLLNR-LGLNLQAPA 403

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               +       +++       + KG   + P        
Sbjct: 404 F--DSRLAKYLLSTVENNEISTIASLYSQTYLVDD----ETFYGKGVKKAIPER------ 451

Query: 153 VQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202
               + F E+  R V    E    L ++L        L D E+ L  +   +   G ++ 
Sbjct: 452 ----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +L++Q       ++L ++I +L      +      L + LF   G+ L    +    
Sbjct: 508 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA    + +       I K+ +     L + +  DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------------ 473
              + Y     G A             +  + +       +                   
Sbjct: 722 NFGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFK 781

Query: 474 ---DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              +     S +  ++      A+   + G+A +++K A     + +++
Sbjct: 782 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DIL   M    K     GY    +L VHDEIV E P +   +V  L    M + 
Sbjct: 809 IQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEA 868

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 869 IQ--LSVPLIAD 878


>gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 889

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/530 (16%), Positives = 176/530 (33%), Gaps = 91/530 (17%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   +L+   ++T + V ++    ++L  +   +D+  + 
Sbjct: 349 FAWSCGD---KLYATDKLDLLQEPILKNFLEKTPLKV-YDFKKAKVLLNR---LDLNLQA 401

Query: 93  WICTSVLARTNGLPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               S LA+              A  + +     +E       + KG   + P       
Sbjct: 402 PAFDSRLAKYLLSTVENNEISTIASLYGQTYMVDDE-----TFYGKGVKKAIPER----- 451

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
                + F E+  R V    E    LI           L D E+ L  +   +   G ++
Sbjct: 452 -----EKFLEHLARKVAVLVETEPVLIEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
             + +L++Q       ++L ++I +L D    +      L + LF   G+ L    +   
Sbjct: 507 KKETLLEMQAENEVVIEQLTQEIYELADEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKT 565

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316
               +   + +LA    + +       I K+ +     L + +  DG++         ++
Sbjct: 566 GYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVSLQDWILDDGKIHTRYV-QDLTQ 624

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   +       
Sbjct: 625 TGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSV 660

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K 
Sbjct: 661 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 720

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE----------------- 473
           +   + Y     G A             +  + +       +                  
Sbjct: 721 VNFGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLF 780

Query: 474 ----DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               +     S +  ++      A+   + G+A +++K A     + +++
Sbjct: 781 KRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DIL   M    K     GY    +L VHDEIV E P +   +V  L    M + 
Sbjct: 809 IQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEA 868

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 869 IQ--LSVPLIAD 878


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 124/357 (34%), Gaps = 55/357 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           +++ E  L  +   +   G  ID        + +A     L+ DIV L      + R + 
Sbjct: 487 VAELEMPLVPVLVAMERAGIGIDKTAFAAFADEVAGRLAILETDIVALAGKPF-NPRSSQ 545

Query: 240 ALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
            L   L+   G+     + G    T +  L          D IL            L  +
Sbjct: 546 QLGEILYTDLGLKAHGKTPGGAASTSQDALERLAGAHPLVDRILEFRKLEKLRSTYLAPM 605

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
                 D R+  TL    A+ TGR S      QN+P +                      
Sbjct: 606 PALADRDSRIHTTLNNM-ATATGRLSSSNPNLQNIPIR---------------------- 642

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
             G     +R+C  A  G +LV AD + IE RVLA ++GE   + AFA+G DI+  T A 
Sbjct: 643 --GEFGRRMRACFTAGPGNRLVAADYSQIELRVLAHLSGESALLDAFAHGADIHARTAAI 700

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471
            F+ P + ++ ++R   K +   L Y  G +                + ++ + +   S 
Sbjct: 701 LFDKPEEAIAPDERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIARYFERLPGLSA 760

Query: 472 F-EDWEQAESHHLWMQ--------------------DQYPEFAVKDKLIGTACELVK 507
           F E   +A     ++                      Q    A+   + G A +++K
Sbjct: 761 FYEGIVEAAKRDGFVTTLAGRRRLLPDIGSANSQLSSQARRQAINTVVQGGAADIIK 817



 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 18/134 (13%)

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
              ++     ++   KRD  +   + RR +  D+    S     +SQ  R+         
Sbjct: 755 LPGLSAFYEGIVEAAKRDGFVTTLAGRRRLLPDIGSANS---QLSSQARRQA------IN 805

Query: 600 NIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
            +VQ  + DI+   M  A  +         +VL +HDE++ ETP+         L  LMT
Sbjct: 806 TVVQGGAADIIKMAMLAAAGDAALAGLGAVLVLQIHDELLLETPEAAAKEAGARLAGLMT 865

Query: 653 KNPSWAKGLPLKAE 666
              S A  +PL+ +
Sbjct: 866 GVISLA--VPLEVD 877


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 138/402 (34%), Gaps = 63/402 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E  L  +   +   G  +D D++   ++   ++  + +    +L      +     
Sbjct: 478 YTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPK 537

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA--SSGSAILK----LN 293
            L+  LF     D+    +       +   I QLA       L    +     K    L 
Sbjct: 538 QLQAVLFDT--FDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLE 595

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L + +  DGR+  T      + TGR S      QN+P +  +                 
Sbjct: 596 GLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA----------------- 637

Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++   
Sbjct: 638 -------GRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYV 690

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            +K F+ P+D+V+ E R   K M   L Y     G ++     A      ++ + +    
Sbjct: 691 GSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMESYFERFGG 750

Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507
              + D    ++                      +   ++     A+   + GTA +++K
Sbjct: 751 VKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIK 810

Query: 508 KAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545
            A     + +     ++   + +     V  G +   +R+  
Sbjct: 811 VAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILE 852



 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595
           +  A+ +           KR +  V+  +R+  Y+  V G   YL    S     R    
Sbjct: 734 AREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVARENAE 793

Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
           +   N  +Q  + DI+   M    K        ++L VHDE+V E        V  +   
Sbjct: 794 RAALNAPIQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILER 853

Query: 651 -MTKNPS 656
            M K   
Sbjct: 854 EMDKAIE 860


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 146/462 (31%), Gaps = 76/462 (16%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
            +   ++F  +  R V+   E  + ++           L D E  L  +   +   G ++
Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           + + +  +Q        +L ++I +L      +      L + LF   G+ L    +   
Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGIILFEEMGLPLEYTKKTKT 554

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316
               +   + +LA    +         I KL +     L +A+  DG++         ++
Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   + S     
Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F     + V+   R   K 
Sbjct: 650 LLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 709

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475
           +   + Y     G +             +  + +       + +                
Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769

Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                     S +  +++     A+   + G+A +++K A     + + +          
Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              +    +    V  VP   +   K  V   + S+  L   
Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVP 863



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  K          ++L VHDEIV E P     +V  +    M   
Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857

Query: 655 PS 656
            S
Sbjct: 858 IS 859


>gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/505 (14%), Positives = 159/505 (31%), Gaps = 70/505 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +     GI++P+  +   + LA+                         + +     + KG
Sbjct: 381 VLLSHYGIELPAAAF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +  + P       H+          +  ++       +L  L + E+ L  +   +   G
Sbjct: 435 AKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++ + +  +Q    +  + L ++I  L      +      L   LF    + L    +
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMRLPLEYTKK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
                  +   + +LA    +         I KL +     L EA+++DG++        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAI 431
              L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRRN 708

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K +   + Y     G A             ++ + +       + +             
Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520
                        S +  +++     A+   + G+A +++K A     + +       ++
Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828

Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545
              + +     V      + R++  
Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    +V  L    M   
Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 860 IELA--VPLVAD 869


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 147/426 (34%), Gaps = 67/426 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D +  L  +   +   G  +D D + +L      E  +L   I+++      +      L
Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF + G+  +  ++    T  ++L   +       L+L     +      ++ L   
Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALPRM 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            + DGR+         + TGR S      QN+P +                         
Sbjct: 595 RADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIPVRT------------------------ 629

Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R C +    G K + AD + IE R+LA ++ ++  + AF +G D +  T ++ F
Sbjct: 630 EFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P++ V+ E R+  K +   + Y     G ++            ++++ +       + 
Sbjct: 690 GLPVEDVTPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYL 749

Query: 474 DWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAWRA 512
           D   AE+                          +      A+   + G+A +++K A   
Sbjct: 750 DRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMTE 809

Query: 513 KHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             + ++      +L   + +     V EG       +  +  +V    +  V + +P   
Sbjct: 810 VQRRIMERGFEAKLLLQVHDELDFSVPEG------EIEELSAIVKDVMEHIVDLRVPLDV 863

Query: 567 RLVYSD 572
            + Y+D
Sbjct: 864 DVSYAD 869


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 112/636 (17%), Positives = 206/636 (32%), Gaps = 140/636 (22%)

Query: 48  TEQSAMPSDLLQY-----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           T+   +  D++       L          N+ F+R++F   L   I     +   +LA  
Sbjct: 426 TKGENLNQDIVLAALRPILESADYPKTFQNAKFDRLVF---LVQGINLTGVVFDPMLASY 482

Query: 103 NGLPSS------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
              P +      L    L L    ++  + +GK  IA     ++ +          +Q +
Sbjct: 483 VLNPDTSHNLTDLTQRYLGLTIQNYVDLVPKGKT-IADINISAVANYCC-------LQVY 534

Query: 157 QLFGEYCK--RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             F    K   ++  T  L K L    + E+ L  +  T+   G RI+   + +L + + 
Sbjct: 535 ATFQLVAKLREELAKTPNLDKLLR---EVEQPLESVLATVEYTGVRINSAYLHELSQQLE 591

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---------DMSEGTLKSIL 265
            +  KL E   +L      +      L   LF   G+                 TL+  L
Sbjct: 592 IDLAKLQEQATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEK-L 649

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCV 324
              + T     +I  R  S   +   ++ L   V  D  R+        A+ TGR S   
Sbjct: 650 QEVDDTGFVNAIIEYRTLSKLKST-YVDALPALVRPDTQRVHTDFN-QTATSTGRLSSSN 707

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P +                           S  +R   +  +G  +  AD + I
Sbjct: 708 PNLQNIPIRT------------------------AFSRQIRKAFLPESGWLMAAADYSQI 743

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA ++ E   ++A+   EDI+  T    F    + V+ ++R I K +   + Y  G
Sbjct: 744 ELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--EDVNSDERRIAKTINFGVIYGMG 801

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           +      +   G+D    ++ +K  +  E + +  ++   ++ Q       + ++G    
Sbjct: 802 S---LKFSRSTGIDKNVANEFIKRFN--ERYAKIFAYLEGVKKQAISLGYVETILG---- 852

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                                                             +R       S
Sbjct: 853 -------------------------------------------------RRRYFDFTNNS 863

Query: 565 SRRLVYSDVK----GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
            R+L  S  +         L    + L+R            +Q  S DI+   M    + 
Sbjct: 864 LRKLKGSKPEDIDLSKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVQIHEV 917

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
                  ++L VHDE+V E P   +  +   + S+M
Sbjct: 918 LKKYQARLLLQVHDELVFEVPPQEWAELQPQIKSVM 953


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 140/422 (33%), Gaps = 58/422 (13%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY----CKRDVEATRELFKRLIPLSDGER 185
           A    F K  +++   D +    V  +  +  Y        V A  +    L    + E 
Sbjct: 447 AQADLFGKTKLNAALEDDSMLEAVTTYACYNAYVAFAAFEKVIAEIKEEGMLDIYENIEM 506

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L      +  +G  +D + + +    ++    +L++ I         +      L + L
Sbjct: 507 PLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYSQAGEEF-NINSPKQLGVIL 565

Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
           F   GI+    ++    T   +L   + T      IL     +       + L+  V  D
Sbjct: 566 FEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQLAKLKSTYADGLAACVDED 625

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+R T      + TGR S      QN+P +                             
Sbjct: 626 GRIRSTF-MQTVTATGRISSTEPNLQNIPIR------------------------MELGR 660

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R           + AD + IE RVLA ++G++  I AF  G+DI+ +T +  FNTP D
Sbjct: 661 EIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTASLVFNTPFD 720

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---- 474
           +V+  QR   K +   + Y     G AK            +  +         F +    
Sbjct: 721 EVTDLQRRRAKAVNFGIVYGISAFGLAKDIGVGRKEAQEYIDNYFVAYPKMHEFLEGLKS 780

Query: 475 -----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              +  S +   +      A+   + GTA +++K A    H  +
Sbjct: 781 HAKEKGYVTTMYGRRRPIPELASSNFMTRQFGERVAMNSPIQGTAADIIKIAMVNVHDRL 840

Query: 518 LQ 519
           L+
Sbjct: 841 LK 842


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 120/690 (17%), Positives = 210/690 (30%), Gaps = 161/690 (23%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITLCAY-AWDDEPVKLWDRTEQSAMP----- 54
            +D ET +  P    L  +GV A+ E       AY     +P    D   ++  P     
Sbjct: 389 ALDTETTALNPFQAELVGLGV-AWGEGLTEL--AYIPIGHQPPVADDLLSETPTPPRQLP 445

Query: 55  -SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPS 107
             ++L  L              N+ ++R++  +     +P    +  ++LA         
Sbjct: 446 LDEVLTALAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLADYLRDANAK 502

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                    N     T   E     A F    +                +    YC  DV
Sbjct: 503 HGLEVLAQRNLGFTPTSYGELVPKGASFAAVPV----------------EAAALYCGMDV 546

Query: 168 EATREL-------FKRLIP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
             TR L        + L P     L   E  L  +   +   G RID   + +L E +  
Sbjct: 547 HVTRRLSPLLRRQLEELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQELSEELGA 606

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
              +L+ +           +     L   LF   G+D               + + +L  
Sbjct: 607 TLARLEAEARAAAGVEFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGWSTDANVLEKLED 665

Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           D  +  L      + KL     + L   +    GR+         + TGR S      QN
Sbjct: 666 DHPVVPLVLEHRTLSKLKSTYVDALPSLMEPETGRVHTDFN-QAVTATGRLSSSNPNLQN 724

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                           S  +R   +   G  L+ AD + IE R+L
Sbjct: 725 IPIRT------------------------EFSRRIRKAFLPQEGWSLISADYSQIELRIL 760

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
             + GE+  ++A+ NG+D++  T     +   + V+ ++R +GK +   + Y  GA+   
Sbjct: 761 THLCGEEVLVEAYRNGDDVHALTARLLLDK--EAVTPDERRLGKTINFGVIYGMGAQ--- 815

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                                                     FA +  +  +  +     
Sbjct: 816 -----------------------------------------RFARETGVSQSQAKDFLSR 834

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR---VANVPRLVMRRHKRDVHIVLPSSR 566
           ++ ++  V     +L E  A       +I  RR     +   L     K  + I L  +R
Sbjct: 835 YKQRYPKVFAFL-ELQERLALSRGYVETILGRRRPFAFDPSGLGRHLGKDPMEIDLEVAR 893

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R                 +Q +R            +Q  S DI+   M +  +       
Sbjct: 894 R-------------GGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQALSQQAL 934

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
              ++L VHDE+V E       ++  +C L
Sbjct: 935 PARLLLQVHDELVLEA---APEALDQVCDL 961


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 141/412 (34%), Gaps = 66/412 (16%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G   D +L+L+L E +     KL+    +       
Sbjct: 470 QQQLKLYEEFELPLAPVLAQMEFAGITPDKELLLQLNEDMGHRIAKLEALAQEQAGEEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           + +    L + LF    + ++  ++    T   +L            IL     +     
Sbjct: 529 NLKSPKQLGVILFERLQLPVIKKTKTGYSTDAKVLEALEGKHPLIATILEHRKLAKLQST 588

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            L  L   ++   GR+    Q    + TGR S      QN+P +                
Sbjct: 589 YLEGLQPLINPKTGRIHTHFQ-QTVTVTGRLSSTDPNLQNIPART--------------- 632

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                      S  +R   +   G   L+  D + +E R+LA IA ++  ++AF +G+DI
Sbjct: 633 ---------EESRQIRRIFVPGAGYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDI 683

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T A+ F  P+D+V+ + R+  K +   + Y     G AK            +  + +
Sbjct: 684 HARTAAEVFGVPLDEVTPQMRSRAKAVNFGIVYGISDFGLAKQLDVGRKEAAGYIASYFE 743

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
                  + +   AE+                         ++      A+   + GTA 
Sbjct: 744 RYTGVKKYMEDIVAEAREQGYVSTLMGRRRYLPEIRSSNFNLRSFAERTAINTPIQGTAA 803

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +++KKA  A          K + +LQ+  +L        +E  +   R    
Sbjct: 804 DIMKKAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAME 855



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655
           +Q  + DI+ + M    +   K      I+L VHDE+V E  +        +  L+    
Sbjct: 798 IQGTAADIMKKAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEK---EQVAQLVRTAM 854

Query: 656 SWAKGL--PLKAE 666
             A  L  PL A+
Sbjct: 855 EGAASLDIPLLAD 867


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 84/499 (16%), Positives = 166/499 (33%), Gaps = 76/499 (15%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +   S  L +L DET      ++    +  K      I  +      +LA     P+ 
Sbjct: 351 ETALADSQFLAWLADETKKKSMFDAKRAVVALK---WKGIDVRGVAFDLLLAAYLLNPAQ 407

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
                 A+     + + E  ++  A + KG   S P + T A H+       W L   + 
Sbjct: 408 DAGDIAAV---AKMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF- 463

Query: 164 KRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                   +L        L+  E+ L  +   +   G  +D   + ++   +A++ + ++
Sbjct: 464 ------MDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIE 517

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278
           + I +       +      L + LF    + ++  ++    T   +L          + I
Sbjct: 518 QRIYEHAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENI 576

Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+           +  L + V  D G++         ++TGR S      QN+P +    
Sbjct: 577 LHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFN-QTLTQTGRLSSAEPNLQNIPIR---- 631

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396
                                     +R   + S    L+  AD + IE RVLA IA +D
Sbjct: 632 --------------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDD 671

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+AF    DI+  T    F+   ++V+   R   K +   + Y     G A+      
Sbjct: 672 NLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITR 731

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 ++++  +      + +                          S +  ++     
Sbjct: 732 KEAAEFIERYFASFPGVRRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAER 791

Query: 492 FAVKDKLIGTACELVKKAW 510
            A+   + G+A +++KKA 
Sbjct: 792 TAMNTPIQGSAADIIKKAM 810



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  L   +M + 
Sbjct: 798 IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQA 857

Query: 655 PSWAKGLPLKAE 666
            S    +PLK +
Sbjct: 858 VS---SVPLKVD 866


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/571 (15%), Positives = 176/571 (30%), Gaps = 106/571 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           D ET    PL               L   ++  EP K W          + ++ L +   
Sbjct: 383 DTETTGLNPLMDN------------LLGVSFCAEPHKAWYMPVSGPADLEAVRPLLEGPA 430

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKM 125
             + H+  F+  + +      I  K     ++LA     P        LA N  ++ T  
Sbjct: 431 EKIGHHLKFDLEVLRA---NGIHVKGPFFDTLLAHALIAPGMKHGMDVLAENLLQYSTIK 487

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----------- 174
                      K                   ++ G+Y   D + T +L            
Sbjct: 488 ----------LKDIAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESG 537

Query: 175 -KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L      E  L  +   +   G R+  + + K    +      L E I +     + 
Sbjct: 538 MEKLF--RTVELPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPL- 594

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L  +LF    +        T + +     ++ LA    +     +    +KL 
Sbjct: 595 NLNSPKQLGDFLFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYRENMKLK 654

Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L + +   DGR+         + TGR +      QN+P +              
Sbjct: 655 STYLDALPKYICPRDGRIHTQF-HQMLTATGRLASQDPNLQNIPVRT------------- 700

Query: 348 NRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R+  + AS    ++ AD + IE R++A ++G+     AF  G 
Sbjct: 701 -----------EQGRLIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREGR 749

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T A+ +  P D+V    R   K +   + Y     G ++            ++ +
Sbjct: 750 DIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISAFGLSQRLGCPRGEAATLIENY 809

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
                   +F +                       +  S +  ++      A+   + GT
Sbjct: 810 FTQFPVVKSFMEDLVHKAEQAGYAETLLGRRRMIPEINSANKTIKSAAERTAINTPIQGT 869

Query: 502 ACELVKKAWR--------AKHQGVLQLWKDL 524
           A +++K A           + + +LQ+  +L
Sbjct: 870 AADMIKIAMIHVDKLLKGTRSRLILQIHDEL 900


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 134/403 (33%), Gaps = 65/403 (16%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            +  L      +   G ++D+D +  +      E   L   I +L      +      L 
Sbjct: 480 IDLPLVSTLTLMERVGAQLDVDALAAMGSATRGEIDSLRAHIHELAGEEF-NVDSPKQLG 538

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           + LF   G+     +     T  + L          D +L     +  +   ++ L    
Sbjct: 539 VILFDKLGLPHGKKTRTGYSTNAATLKKLQSIHPIADEVLRYRELAKMSSTYIDALPRMR 598

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           + DGR+         + TGR S      QN+P +                          
Sbjct: 599 ADDGRVHTHFN-QTVTTTGRLSSSDPNLQNIPVRT------------------------D 633

Query: 360 ASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R C +    G   V AD + IE R+LA ++G++  + AF +G D +  T A+ F+
Sbjct: 634 FGRRIRECFVPLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFD 693

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            P+D+V+ + R+  K +   + Y     G A+            + ++ +      ++ D
Sbjct: 694 VPVDEVTPQLRSRAKAVNFGIVYGQQAFGLAQSLDIGFKEAQDMIDRYFEAYPGVRSYLD 753

Query: 475 WEQAESH-------HLWMQDQYPEF--------------AVKDKLIGTACELVKKAWRA- 512
               ++            +   PE               A+   + G+A +++K A    
Sbjct: 754 KTVEDAKQTGYAVTMFGRKRHIPELKMRNAVQRGFGERTAMNHPMQGSAADIIKLAMNEV 813

Query: 513 ---------KHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                    + Q +LQ+  +L         E  S   R V + 
Sbjct: 814 QRRLIEDGFESQLMLQVHDELDLSVPADELERLSDMVREVMST 856


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 140/408 (34%), Gaps = 74/408 (18%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +  ++   G +++  ++  +   +  + +KL  +I +L      +   T   
Sbjct: 526 DVELPLAPILGSMEWIGIKVNPKVLQDMAGELNSDIQKLQAEIHELAGETF-NINSTQQF 584

Query: 242 RMYLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLASSGSAILKLN 293
              LF   G+ ++  ++         L+ +   H  + ++ +   L +L S+    L   
Sbjct: 585 GKILFEKLGLPVIKRTKTGYSTDVEVLEELSDRHPIVPKVLEFRQLMKLKSTYVEGL--- 641

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L      +GR+  +      + TGR S      QN+P                      
Sbjct: 642 -LPLIDGPEGRIHTSFN-QSVTATGRLSSTEPNLQNIP---------------------- 677

Query: 354 ADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   IA   G  L+ AD + IE R+LA ++ +     AFA  +DI+  T
Sbjct: 678 --VRLEQGRHIRKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRT 735

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            ++ F+ P+  V++E R   K +   + Y     G ++            ++ + +    
Sbjct: 736 ASEVFDVPMGNVTREMRRRAKAVNFGIVYGISDFGLSRDLGVTRGEAKEYIEGYFRRYHG 795

Query: 469 TSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVK 507
              + D   AE+                          Q+     A+   + GTA +++K
Sbjct: 796 VRGYIDRIIAEARQQGFVTTLLGRRRRLPDLFVKNKIRQNFGERTAMNTPIQGTAADIIK 855

Query: 508 KAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
            A             K + +LQ+  +L            +   +R+  
Sbjct: 856 AAMVKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLIKRIME 903



 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 36/229 (15%)

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            +  +A+       +   ++    +F+D   A + +  +  +         +     E+ 
Sbjct: 696 GWTLLAADYSQIELRILAHLSDDPSFKD---AFAKNQDIHTRTASEVFDVPMGNVTREMR 752

Query: 507 KKAWRAKHQGVLQ------LWKDLTEGFACVVQEGGSISARRVANVPRLVMR-----RHK 555
           ++A +A + G++       L +DL        +E      RR   V   + R     R +
Sbjct: 753 RRA-KAVNFGIVYGISDFGLSRDLGVTRGEA-KEYIEGYFRRYHGVRGYIDRIIAEARQQ 810

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614
             V  +L   RRL    VK                + +G +   N  +Q  + DI+   M
Sbjct: 811 GFVTTLLGRRRRLPDLFVKNKIR------------QNFGERTAMNTPIQGTAADIIKAAM 858

Query: 615 KNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGT-LCSLMTKNPS 656
               K     G    +   VHDE++ E P+     V   +  +M K   
Sbjct: 859 VKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTIE 907


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 168/483 (34%), Gaps = 70/483 (14%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALN 117
            DE++     +S    ++  +  GI++  K     ++LA     P +    + +      
Sbjct: 365 EDESMKKWVFDSK-RSVVALRWQGIEL--KGTEFDALLAAYIINPGNSYDDVASVAKEYG 421

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +  ++K E      A + KG+  + P +   A+H+          +  +    E   +L
Sbjct: 422 LNI-VSKDE------AVYGKGAKRAVPAEKELADHLARKASAVNSLRDKLLHALEENNQL 474

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
               D E  L L+   +   G ++D++ + ++ E +  + K+ +E I  +      +   
Sbjct: 475 ELYEDLELPLALILGEMESMGVKVDVERLKRMGEELKAKLKEYEEKIHDIAGEPF-NINS 533

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L + LF   G+  V  ++    T   +L            IL            +  
Sbjct: 534 PKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLADKHDIVAHILQYRQIGKLQSTYIEG 593

Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L +    D  ++         ++TGR S      QN+P +                    
Sbjct: 594 LLKVTRKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T
Sbjct: 633 ----LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKT 688

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
               F+   D+V++  R   K +   + Y     G ++         G  + ++ ++   
Sbjct: 689 AMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG 748

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + +                       +  S +  ++      A+   + G+A +++K
Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIK 808

Query: 508 KAW 510
           KA 
Sbjct: 809 KAM 811



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 20/185 (10%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKD--LTEGFACVVQEGGSISARRVANVPRL 549
             +   + + V +A R +    + G++    D  L++      +E G+   R + + P  
Sbjct: 690 MDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG- 748

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           V    +  V               +    Y+   TS+    R++  +   N  +Q  + D
Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRR---RYIPELTSRNFNLRSFAERTAMNTPIQGSAAD 805

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
           I+ + M +             ++L VHDE++ E P      +  L   +M      A  +
Sbjct: 806 IIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHAL--ALDV 863

Query: 662 PLKAE 666
           PLKA+
Sbjct: 864 PLKAD 868


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/552 (16%), Positives = 188/552 (34%), Gaps = 89/552 (16%)

Query: 8   IETRSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +E  S   + +          +  +    +  I   A+++  + V   D  +      DL
Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQTE----DL 351

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            +    E      H    + ++     GI+  SK +I T+V+A       S  +    L 
Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSK-YIDTAVMAYLLNPSESNYDLDRVLK 409

Query: 118 ------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                    +     +G+               Y C+R  ++   +              
Sbjct: 410 KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNFIE----EM 465

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           ++ K L    + E  L  + +++   G+ +D +++ +L + I     ++ + I K     
Sbjct: 466 DMKKLL---LEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQ 522

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
             +      L  +LF    + ++  ++    T   +L        +  D+I  R   +  
Sbjct: 523 F-NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTKL 580

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++     +  + R+    +    + TGR S      QN+P +E             
Sbjct: 581 KSTYIDGFLPLMDENNRVHSNFK-QMVTATGRISSTEPNLQNIPIRE------------- 626

Query: 348 NRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                           +R   I    +G  +V AD + IE RVLA ++G++  I++F N 
Sbjct: 627 -----------EFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNN 674

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           EDI++ T ++ F  P++KV+ E R   K +   + Y     G ++  K         +  
Sbjct: 675 EDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINN 734

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           + +  K    + +                       +  S +   + Q    A+   + G
Sbjct: 735 YFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQG 794

Query: 501 TACELVKKAWRA 512
           +A +++K A   
Sbjct: 795 SAADIIKMAMVK 806


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 126/370 (34%), Gaps = 55/370 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L      +   G  ++ D + +    +     +L+++I +L      +      L
Sbjct: 478 EIEMPLVYALYDMEKAGIAVEKDALAEYGSRLTGRIDELEKNIYELAGESF-NINSPKQL 536

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF   G+     ++    T   IL            IL     +       + L+  
Sbjct: 537 GIILFEKLGLPFAKKTKTGYSTSADILEKLRTYDPIVGQILEYRQLTKLKSTYADGLAGY 596

Query: 299 VSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +  D  R+ G       + TGR S      QN+P                          
Sbjct: 597 IRPDDQRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VR 631

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +       V AD + IE RVLA +AG++  I+A+   +DI+  T ++ F
Sbjct: 632 MELGRLIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVF 691

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +TP D+V+  QR+  K +   + Y     G ++            +QQ+ +       F 
Sbjct: 692 HTPFDEVTPAQRSNAKAVNFGIVYGISSFGLSQDLSITKKEAENYIQQYFRTYPGIKAFL 751

Query: 474 DWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAWRA 512
           D    ++                       +MQ  +    A+   + GTA +++K A   
Sbjct: 752 DRSVEDAKEKGYAVTLFGRRRPVPELLSSNFMQRSFGERIAMNSPIQGTAADIIKIAMVR 811

Query: 513 KHQGVLQLWK 522
            ++ + +   
Sbjct: 812 VNRRLKRQHM 821



 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R++G ++  N  +Q  + DI+   M    +          ++L +HDE++ E       
Sbjct: 784 QRSFGERIAMNSPIQGTAADIIKIAMVRVNRRLKRQHMKSRLILQIHDELLIEAVLDEVD 843

Query: 643 SVGTL 647
           +V  +
Sbjct: 844 AVKAI 848


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 139/419 (33%), Gaps = 59/419 (14%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                 + A  +        +D E  L  +   +   G  +D+D++   ++   ++  + 
Sbjct: 461 MELAEKLTAELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQ 520

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +    +L      +      L+  LF    +     ++    +         +       
Sbjct: 521 ERSARELAGDEKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFL 580

Query: 281 RLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               +     K    L  L + V  DGR+  T      + TGR S      QN+P +  +
Sbjct: 581 DHLLAHREYQKMKTTLEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA 639

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395
                                      +RS  I   G ++L+ AD + IE RV+A ++ +
Sbjct: 640 ------------------------GRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSAD 675

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+A+  GED++    ++ F+ P+D+V+ E R   K M   L Y     G ++     
Sbjct: 676 PGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIP 735

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
           A      ++ + +       + D    ++                      +   ++   
Sbjct: 736 AGEAKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAE 795

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545
             A+   + GTA +++K A     + +     ++   + +     V  G +   R +  
Sbjct: 796 RAALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQVREILE 854


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 119/361 (32%), Gaps = 55/361 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  +D D++ +L   + ++   L     +L      +      L
Sbjct: 470 DVELPLIPILAQMELNGIAVDQDMIQELSNKLEEKLDSLRSRAYELAGEEF-NLNSPKQL 528

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF   G+ ++  ++    T  S+L           LIL            ++ L + 
Sbjct: 529 GEILFEKLGLPVIKRTKTGYSTSASVLEKLEDKHEIVPLILEYRKYQKLKSTYVDPLPDL 588

Query: 299 VSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++    R+  +      + TGR S      QN+P +                        
Sbjct: 589 INPKTERIHTSFNQL-VTATGRLSSTEPNLQNIPIRT----------------------- 624

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +A   K+L+  D + IE RVLA I+ ++  I A+  G+DI+  T A+ F
Sbjct: 625 -EEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVF 683

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                +VS +QR   K +   + Y     G AK            + Q+         + 
Sbjct: 684 GLEASEVSYQQRRRAKAINFGIAYGISPWGLAKDINVSKQEAEDYINQYLNRYPKVKEYM 743

Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512
           D +  ++                                 A+   + G+A +++K A   
Sbjct: 744 DHQIKQAKEEGYVTTILNRRRYLPEINSSNYHRRSFGERMAINTPIQGSAADIMKLAMLE 803

Query: 513 K 513
            
Sbjct: 804 S 804


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 116/633 (18%), Positives = 204/633 (32%), Gaps = 128/633 (20%)

Query: 49  EQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           E   +P  + L  LR     +    V  N+ F+R++  +  GI +    +  T + +   
Sbjct: 397 EGQNLPLEETLAALRPILEGDRYPKVLQNAKFDRLVL-RFQGIQLRGVVF-DTMLASYVI 454

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
              +S     L   +       +  + L+ +           D T A+   A     +YC
Sbjct: 455 NPEASHNLKDLCQRYLPLQA--QSYRTLVGK-----------DQTLADLSPATVA--QYC 499

Query: 164 KRDVEATRELFKRL-IPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIA 214
             DV  T  L ++L   L+   R L L        +   +   G RID D + +L + + 
Sbjct: 500 GLDVHTTYLLKEKLEADLTPRLRQLLLEVELPLEPILAEMEATGIRIDSDYLRQLSQELE 559

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           Q+   L +            +     L   LF   G+D     +  L      + + +L 
Sbjct: 560 QQLAALQQQAWDAVGQPFNLA-SPKQLSELLFGTLGLDTKKTHKTKLGYSTDAATLEKLR 618

Query: 275 KDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328
            D  +  L  S   + KL +     L   V  D GR+         + TGR S      Q
Sbjct: 619 GDHPVIDLILSHRTLAKLKSTYVDVLPTLVRPDTGRVHTEFN-QAVTATGRLSSSSPNLQ 677

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                           S  +R   I   G  LV AD + IE R+
Sbjct: 678 NIPIRT------------------------EFSRQIRRAFIPEAGWLLVAADYSQIELRI 713

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++ E   + A+  G D++  T    F      +S  +R +GK++   + Y  G + F
Sbjct: 714 LAHLSQEPALLAAYQEGADVHRLTAQ--FLLEKTDISSSERRLGKMINFGVIYGMGPQRF 771

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
              A   G+ + +    ++    +  + +   +   M+         + ++G        
Sbjct: 772 ---AREAGVSVAEAKVFIQ--RFYNRYPRVFDYLRQMERLALSQGYVETILGR------- 819

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                                                  R       R++   L      
Sbjct: 820 ---------------------------------------RRYFAFESRELQ-SLRGKPLD 839

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDI 624
           V +DV      ++     L+R            +Q  S DI+   M             +
Sbjct: 840 VLADVDPSKLKMSNYERGLLRAAANAP------IQGSSADIIKCAMVKLAPLLPPEKARL 893

Query: 625 VLTVHDEIVSE-TPDTPYFSVGTLCSLMTKNPS 656
           +L VHDE+V E TP+       T+  +M+    
Sbjct: 894 LLQVHDELVLEMTPEAWEHLQTTIPEVMSTAVP 926


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 120/364 (32%), Gaps = 58/364 (15%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G  ++   + +          ++++DI  L      +      L 
Sbjct: 492 VELPLVPILAAMERTGVAVNRAALGRALAAANARIAEIEQDIYALAGTEF-NISSPKQLG 550

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLSE 297
             LF   G+    M +       +   + ++       D +L     S      L  +  
Sbjct: 551 EVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGA 610

Query: 298 AVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            +  D GR+  +      + TGR S      QN+P +                       
Sbjct: 611 LIRPDTGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT---------------------- 647

Query: 357 LGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  VR+      G   L+ AD + IE R+LA ++G++  I AF  G+DI+  T ++
Sbjct: 648 --EEGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASE 705

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F  P+ +V+  QR   K +   + Y     G ++            ++++ +       
Sbjct: 706 VFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVRA 765

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F D   A++H                     +   +      A+   + GTA +L+K A 
Sbjct: 766 FLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAM 825

Query: 511 RAKH 514
               
Sbjct: 826 IRAD 829



 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R+   ++  N  +Q  + D++   M  A            I+L VHDE+V E  +    
Sbjct: 800 QRSNAERMAMNTPIQGTAADLIKIAMIRADAALRAAGVKSRILLQVHDELVLEVVNDE-- 857

Query: 643 SVGTLCSLMTKNPSWAKGL--PLKAE 666
            +  +  L+T   S A  L  PL  +
Sbjct: 858 -IAQVTELLTAAMSGAAQLAVPLAVD 882


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 144/414 (34%), Gaps = 68/414 (16%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E+ L  + Q IN  G  +D   +  L   +  E   L+  I         +      + 
Sbjct: 393 IEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAGREF-NINSPKQMG 451

Query: 243 MYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
             LF   G+   +  +    +     S + ++ +D  +         + KL     + L 
Sbjct: 452 EVLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYRELQKLVSTYIDNLP 511

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             VS+DGRLR T    GA+ TGR +      QN+P +                       
Sbjct: 512 PLVSADGRLRTTFVQTGAA-TGRMASQNPNLQNIPIRT---------------------- 548

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
               S  +R   +AS G  +V  D + IE R+ A ++ ++  ++ FA GED++     + 
Sbjct: 549 --EESKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVAVRV 606

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK------TMASHCGLDLQQFS------- 463
           F    ++V++E R   KV+   + Y  G    +      T           +        
Sbjct: 607 FGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNLGEGTSREEAQEFFNAYFNTFTRLA 666

Query: 464 QNVKSTSTF--------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           + ++ T  F                +   +S   +++ Q    A+   + GTA + ++ A
Sbjct: 667 EYLEETKAFARKNGYTETLFGRRRHFPGMQSTAPFIRAQAERMAINAPVQGTAADAMRVA 726

Query: 510 WRAKHQGV--------LQLWKDLTEGFACVVQEGG-SISARRVANVPRLVMRRH 554
               +Q +        + +   + +     ++         ++  + + V+  +
Sbjct: 727 MNLVYQYIQTEKKTDDVHILLQVHDELLFEIKNNVLETEIPKLVELMQGVLEGY 780


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 131/384 (34%), Gaps = 69/384 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +  ++   G+ I+  ++ +L+     E ++  ++I +L D    +      L
Sbjct: 557 EVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELADEEF-NVSSPKQL 615

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF    + ++  ++       +   + +L     +         I K+       L 
Sbjct: 616 GKILFEKLDLPIIKKTKTG--YSTNQEVLEKLLDKHEIIPKIMYYRQITKISSTYVEGLK 673

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  DGR+         + TGR S      QN+P +                       
Sbjct: 674 NVIDEDGRIHSNFN-QTVTTTGRLSSTDPNLQNIPIRH---------------------- 710

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   I    G  LV  D + IE RVLA IAG++  I AF +  DI+  T ++
Sbjct: 711 --ELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHTKTASE 768

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471
            F  P++ V+   R+  K +   + Y   A    +  K   +     +  + +      +
Sbjct: 769 VFKVPVEDVTSLMRSRAKAVNFGIVYGISAFSLSQDLKIPKAEAQEYMNIYFERYPKIKS 828

Query: 472 FEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAW 510
           + +   +E+                                 A+   + G+A +++K A 
Sbjct: 829 YLENIVSEAEEKGYVLTILNRRRFIPEINASNKIVKALGERLAMNAPIQGSAADIIKIAM 888

Query: 511 ----------RAKHQGVLQLWKDL 524
                     + + + +LQ+  +L
Sbjct: 889 INVYNKLKESKMQSKLILQVHDEL 912



 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 594 GGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           G +L  N  +Q  + DI+   M N       +K    ++L VHDE++    +  +  V  
Sbjct: 867 GERLAMNAPIQGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELILNVKENEFEEVKK 926

Query: 647 LC 648
           + 
Sbjct: 927 IV 928


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 94/567 (16%), Positives = 183/567 (32%), Gaps = 103/567 (18%)

Query: 1   MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +  +  D ET S + L           A +   A++W+          E      +L+
Sbjct: 366 MKQNSVCFDTETTSLKTL----------DAELVGIAFSWESHKGFYVAFPEDQNEAQELV 415

Query: 59  QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113
           + LR       +  V  N  ++  +        +  K  +  ++LA              
Sbjct: 416 EKLRPFFESTEIEKVGQNLKYDIKVLANY---KLKVKGPLFDTMLAHYIINPDMRHNMNI 472

Query: 114 LA---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           LA   LN+S    +   GK       KG         +  +         +Y   D + T
Sbjct: 473 LAETYLNYSPQPIEDLIGK-------KGKRQKTMRTVSLEDQT-------QYAVEDADIT 518

Query: 171 RELFKRLI---------PL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L              PL  D E  L  +   +   G  +D   +  + E + ++ ++L
Sbjct: 519 FQLKTYFEKELKEASNEPLFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERL 578

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++ +    +G   +      L   LF    I        + +       ++  AKD  + 
Sbjct: 579 EKSVYVEAEGEF-NIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIV 637

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           R       + KL     + L + +    +   T      + TGR S      QN+P +  
Sbjct: 638 REVLEWRQLSKLKSTYVDALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIPIRTE 697

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       VR   +       L+ AD + IE R++A ++ 
Sbjct: 698 R------------------------GREVRKAFVPRDENYVLLAADYSQIELRIIAALSQ 733

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           E   + AF NGEDI+ +T A+ F   I++V++ QR+  K +   + Y     G +     
Sbjct: 734 EKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGIIYGVSAFGLSNQTDL 793

Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
             +     ++ + +       + D                      +   + +  ++   
Sbjct: 794 TRNESKELIETYYKTYPKLRDYMDEQVEFAKEHGYVKTVMGRRRYLKDINAKNHIVRSAA 853

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQG 516
              AV   + G+A +++K A    +  
Sbjct: 854 ERNAVNAPIQGSAADIIKVAMINIYDA 880


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna (Open Form)
          Length = 580

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 89/552 (16%), Positives = 188/552 (34%), Gaps = 89/552 (16%)

Query: 8   IETRSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +E  S   + +          +  +    +  I   A+++  + V   D  +      DL
Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQTE----DL 351

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            +    E      H    + ++     GI+  SK +I T+V+A       S  +    L 
Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSK-YIDTAVMAYLLNPSESNYDLDRVLK 409

Query: 118 ------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                    +     +G+               Y C+R  ++   +              
Sbjct: 410 KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNFIE----EM 465

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           ++ K L    + E  L  + +++   G+ +D +++ +L + I     ++ + I K     
Sbjct: 466 DMKKLL---LEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQ 522

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
             +      L  +LF    + ++  ++    T   +L        +  D+I  R   +  
Sbjct: 523 F-NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTKL 580

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++     +  + R+    +    + TGR S      QN+P +E             
Sbjct: 581 KSTYIDGFLPLMDENNRVHSNFK-QMVTATGRISSTEPNLQNIPIRE------------- 626

Query: 348 NRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                           +R   I    +G  +V AD + IE RVLA ++G++  I++F N 
Sbjct: 627 -----------EFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNN 674

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           EDI++ T ++ F  P++KV+ E R   K +   + Y     G ++  K         +  
Sbjct: 675 EDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINN 734

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           + +  K    + +                       +  S +   + Q    A+   + G
Sbjct: 735 YFERYKGVKDYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQG 794

Query: 501 TACELVKKAWRA 512
           +A +++K A   
Sbjct: 795 SAADIIKMAMVK 806


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 92/542 (16%), Positives = 173/542 (31%), Gaps = 82/542 (15%)

Query: 32  LCAYAWDDEPVKLW--DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGI 86
           L A A      + W  D T          Q+   L D  +    H+     I++    GI
Sbjct: 342 LAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLK-NFIVYLNNRGI 400

Query: 87  DIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           D     +  T + A             + A   LN S    +   GK       K     
Sbjct: 401 DFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEKLAGKGKSFTLFKDMQPD 459

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                     V  +        R +++  +   +     D E  L      +   G++++
Sbjct: 460 VLSK-----TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKVN 514

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +D +++  + + ++   + ++I  L      +      L + LF   G+ ++  ++    
Sbjct: 515 VDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPIIKKTKTGYS 573

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L   +      + IL               L   ++   G++  +      + TG
Sbjct: 574 TDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN-QTVTATG 632

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P                             S  +R   I S     L+
Sbjct: 633 RISSTEPNLQNIP------------------------IKLEMSRKIRKVFIPSDENYLLL 668

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I  ++  I AF N EDI+ +T A  F  P ++V+   R+  K +  
Sbjct: 669 DADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNF 728

Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
            + Y  G    AK  K         +  +     +   +                     
Sbjct: 729 GIVYGIGDFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRR 788

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK 522
               + +S +  ++      A+   + G+A +++K A    H          + +LQ+  
Sbjct: 789 RYLPELKSRNFNIRSFGERVAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHD 848

Query: 523 DL 524
           +L
Sbjct: 849 EL 850


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/461 (15%), Positives = 150/461 (32%), Gaps = 75/461 (16%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYS---DVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L      D     ++    + +
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAKSKK 880


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 91/542 (16%), Positives = 172/542 (31%), Gaps = 82/542 (15%)

Query: 32  LCAYAWDDEPVKLW--DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGI 86
           L A A      + W  D T          Q+   L D  +    H+     I++    GI
Sbjct: 342 LAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLK-NFIVYLNNRGI 400

Query: 87  DIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           D     +  T + A             + A   LN S    +   GK       K     
Sbjct: 401 DFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKDMQPD 459

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                     V  +        R +++  +   +     D E  L      +   G++++
Sbjct: 460 VLSK-----TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKVN 514

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +D +++  + + ++   + ++I  L      +      L + LF   G+ ++  ++    
Sbjct: 515 VDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPIIKKTKTGYS 573

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L   +      + IL               L   ++   G++  +      + TG
Sbjct: 574 TDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN-QTVTATG 632

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P                                +R   I S     L+
Sbjct: 633 RISSTEPNLQNIP------------------------IKLEMGRKIRKVFIPSDENYLLL 668

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I  ++  I AF N EDI+ +T A  F  P ++V+   R+  K +  
Sbjct: 669 DADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNF 728

Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
            + Y  G    AK  K         +  +     +   +                     
Sbjct: 729 GIVYGIGDFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRR 788

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK 522
               + +S +  ++      A+   + G+A +++K A    H          + +LQ+  
Sbjct: 789 RYLPELKSRNFNIRSFGERVAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHD 848

Query: 523 DL 524
           +L
Sbjct: 849 EL 850


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 88/579 (15%), Positives = 179/579 (30%), Gaps = 90/579 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           + A++W ++      +          ++ L     +       F+R  +    LGI++P+
Sbjct: 344 ILAFSWGNKEAIYVSKNLDLLKDRLFVEALSKP--IKT---YDFKRSKVLLSHLGIELPT 398

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   S LA+               +        ++ +     + KG+  + P      
Sbjct: 399 ADF--DSRLAKYLLSTVEDNELSTIASLYGQTPLAKDVEV----YGKGAKKAVP------ 446

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLD 204
                +Q      +  VE    L ++L        L D E  L  +   +   G +++  
Sbjct: 447 EDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITGIKVNRQ 506

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            +  ++         L ++I  +      +      L   LF   G+      +      
Sbjct: 507 TLKDMEVENQVTLDALTQEIYDMAGQEF-NINSPKQLGTILFEEMGLPTSMTKKTKTGYS 565

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGR 319
            +   + +LA    +         I KL +     L + +  DG++         ++TGR
Sbjct: 566 TAVDVLERLAPHAPIVAKILEYRQIAKLQSTYVVGLQDFILDDGKIHTRY-LQDLTQTGR 624

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R           L+ 
Sbjct: 625 LSSVDPNLQNIP------------------------VRLEQGRLIRKAFTPEWEDSVLLS 660

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437
           +D + IE RVLA I+G++  I AF NGEDI+  T  + FN    + V+   R   K +  
Sbjct: 661 SDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRRNAKAVNF 720

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------ 475
            + Y     G ++            +  + +       + +                   
Sbjct: 721 GVVYGISDYGLSQNLGISRKAAKNYIATYFERFPGIKDYMERVVREAKDKGYVETLFKRR 780

Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                  S +  +++     A+   + G+A +++K A     Q +        E  +   
Sbjct: 781 RTLPDINSRNFNIRNFAERTAINSPIQGSAADILKIAMINLDQAL--------EAGSFKT 832

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           +    +    V  VP   +   K+ V   + S+  L   
Sbjct: 833 KMLLQVHDEIVLEVPNAELSAIKKLVKKTMESAIVLAVP 871



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DIL   M N  +          ++L VHDEIV E P+    ++  L    M   
Sbjct: 806 IQGSAADILKIAMINLDQALEAGSFKTKMLLQVHDEIVLEVPNAELSAIKKLVKKTMESA 865

Query: 655 PSWAKGLPLKAE 666
              A  +PL A+
Sbjct: 866 IVLA--VPLLAD 875


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 147/426 (34%), Gaps = 67/426 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D +  L  +   +   G  +D D + +L      E  +L   I+++      +      L
Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF + G+  +  ++    T  ++L   +       L+L     +      ++ L   
Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALPRM 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            + DGR+         + TGR S      QN+P +                         
Sbjct: 595 RADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIPVRT------------------------ 629

Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R C +    G K + AD + IE R+LA ++ ++  + AF +G D +  T ++ F
Sbjct: 630 EFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P++ VS E R+  K +   + Y     G ++            ++++ +       + 
Sbjct: 690 GLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYL 749

Query: 474 DWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAWRA 512
           D   AE+                          +      A+   + G+A +++K A   
Sbjct: 750 DRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMTE 809

Query: 513 KHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             + ++      +L   + +     V EG       +  +  +V    +  V + +P   
Sbjct: 810 VQRRIMERGFEAKLLLQVHDELDFSVPEG------EIEELSAIVKDVMEHIVDLRVPLDV 863

Query: 567 RLVYSD 572
            + Y+D
Sbjct: 864 DVSYAD 869


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 159/493 (32%), Gaps = 71/493 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-----N 111
           L +   ++ +  V HN  F+  +            +   T + A      +S K      
Sbjct: 405 LEKLFAEKELTLVMHNGKFDLEVLAANGMSAKTECKIFDTMIAAWLLNPAASGKSPYSLE 464

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEA 169
                       + ++       F    ++    Y    ++  +Q + L  +  K+    
Sbjct: 465 FLAETKLGLKGIEFKDIVQKNQTFADVPLEKAFKYGAEDSDFTLQLYYLLKDEIKK---- 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                ++L    + E  +  +  ++  +G  +D   + + ++ +A    + +++I K   
Sbjct: 521 --SNLEKLF--YEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAVLISEKEKEIYKEAG 576

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284
                +     L+  LF    +     ++    T  ++L     +       +IL+  + 
Sbjct: 577 CEFNIA-SPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFSTNDPLPKMILDYRSY 635

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +      +  L      +GR+  +    G + TGR S      QN+P ++ S        
Sbjct: 636 TKLQSTYVEALPLLADKNGRIHTSFLQTG-TATGRLSSRDPNLQNIPVRDES-------- 686

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +RS   A  G  L+ AD + IE  VLA ++G+     AF N
Sbjct: 687 ----------------GRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSAFIN 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
           G D++ +T A  +    ++V  EQR   K +   + Y       A       +     + 
Sbjct: 731 GIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRLANELNISRTEAKNFID 790

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLI 499
           Q+         F D  +  +      +                          A+   + 
Sbjct: 791 QYFSTYSDVKKFLDETKRMARENGYVETITGRRRYIPEIKSSSKIVLQGAERIAINTPIQ 850

Query: 500 GTACELVKKAWRA 512
           G+A ++VK A   
Sbjct: 851 GSAADIVKTAMIK 863


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/546 (17%), Positives = 187/546 (34%), Gaps = 108/546 (19%)

Query: 29  VITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
              +     ++    + D      + +    + L  ++ DETV  V H+S        K 
Sbjct: 340 EYLILG---EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY 396

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
              DI  + +   + +A    + SS  N               E   LI RF +  I S 
Sbjct: 397 ---DIDIQGFDFDTAIAAYL-IDSSKANY--------------EVFDLINRFLEKDIKSD 438

Query: 144 PYD----CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
             D    C+        +L     K D++   EL+ +       E  L  +  ++   G+
Sbjct: 439 SNDLKAICSSYLKKLYEKLKEMLHKEDMD---ELYYK------VEHPLIYVLSSMESIGF 489

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +I+ D + +L+    ++ +K +++I +L D    +      L   LF    + ++  ++ 
Sbjct: 490 KINKDKLEELRVKFKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKT 548

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGA 314
                 +   + +L     +         I K+N+     L   +  DG +         
Sbjct: 549 G--YSTNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFN-QTV 605

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           + TGR S      QN+P +                              +R   I  +  
Sbjct: 606 TTTGRLSSTEPNLQNIPIKY------------------------EMGKEIRKVFIPQDSD 641

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+  D + IE RVLA +A +   I AF +  DI+  T ++ F  P+D+V+   R+  K
Sbjct: 642 DILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAK 701

Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------------- 475
            +   + Y       A+  K         +  + +       + ++              
Sbjct: 702 AVNFGIVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTI 761

Query: 476 -------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQG---VL 518
                   + +S +  ++      A+   + G+A +++K A        R K+     +L
Sbjct: 762 LNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELIL 821

Query: 519 QLWKDL 524
           Q+  +L
Sbjct: 822 QVHDEL 827


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 133/372 (35%), Gaps = 58/372 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L      + + G R+D + + K    + ++  KL+E I+        +      L
Sbjct: 482 NIEMPLIYSLAKMENTGVRVDEERLKKYANTLLEKIDKLEESIISKAGESF-NINSPKQL 540

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296
              LF    +     ++       +   + +LA +  + R       + KLN+     L+
Sbjct: 541 GEILFGKLKLSGGKKTK--TGYSTAADVLEKLALEHEIIRDILEYRQLTKLNSTYATGLA 598

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  DGR+ GT      + TGR S      QN+P +                       
Sbjct: 599 GYIREDGRIHGTFN-QTITATGRISSTEPNLQNIPVRT---------------------- 635

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +   G   V AD + IE RVLA ++G++  I+++ +  DI+  T ++ 
Sbjct: 636 --EMGSKIRDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQV 693

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P+++V+ E R   K +   + Y     G ++            +  + +       F
Sbjct: 694 FHVPLEEVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYGGVKKF 753

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D + A++                      +   +      A+   + G+A +++K +  
Sbjct: 754 LDKQVADAKEKGFVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIMKISML 813

Query: 512 AKHQGVLQLWKD 523
              + + +   D
Sbjct: 814 KVDEALKESGYD 825



 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642
            R++G ++  N  +Q  + DI+   M    +     GYD  IVL +HDE++ E  +    
Sbjct: 787 TRSFGDRVAMNSPIQGSAADIMKISMLKVDEALKESGYDANIVLQIHDELLIEVKEEEAE 846

Query: 643 SVGTLCS 649
            V  L  
Sbjct: 847 KVSKLVE 853


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 159/496 (32%), Gaps = 67/496 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D   +S +   L  +L D + +    +S   +   K+  GI +    +    VLA     
Sbjct: 348 DIAAKSDI---LRCWLEDSSKIKYMSDSKASQAALKRA-GIQLAGVDF--DLVLASYINN 401

Query: 106 PS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           P  S  +       +  L   +          KG+  + P     A HV          +
Sbjct: 402 PGLSGDDVAT---LARELGYYDVQADETVY-GKGAKRAIPEIDKLAQHVSRKAYAVWSLQ 457

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             +EA  +  ++     D E  L  +   +   G  ++   + K+ + + ++   L+++I
Sbjct: 458 PKLEALLKENEQFDLYKDLELPLAAILGEMESEGITVNRATLEKMGQELNEKLVVLEQEI 517

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
                    +      L + LF   G+ ++  ++    T   +L          + IL  
Sbjct: 518 YAEAGETF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLKSEHAIIEYILLY 576

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + +   D ++    Q    + TGR S      QN+P +       
Sbjct: 577 RQLGKLQSTYIEGLLKEIHEKDSKVHTRFQ-QALTATGRLSSTDPNLQNIPIR------- 628

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S     L  AD + IE RVLA ++ +   +
Sbjct: 629 -----------------LEEGRKIRQAFVPSNENWILFSADYSQIELRVLAHMSEDKNLV 671

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  G D++  T    F+   D+V    R   K +   + Y     G ++         
Sbjct: 672 EAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQNLDITRKEA 731

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              + ++  +      + D                          S +  ++      A+
Sbjct: 732 ATFIDKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTAM 791

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +++KKA 
Sbjct: 792 NTPIQGSAADIIKKAM 807



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E P      +  +   +M   
Sbjct: 795 IQGSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENA 854

Query: 655 PS 656
             
Sbjct: 855 IE 856


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G+++D + + +  + I  +  KL+  I ++      +      L 
Sbjct: 451 IEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWF-NINSPKQLS 509

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + +V  ++    T   +L           LIL+    +         L +A+
Sbjct: 510 YILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTTYCQGLVQAI 569

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+       G + TGR +      QN+P +                         
Sbjct: 570 NPATGRIHTNFIQTG-TATGRLASAEPNLQNIPVKY------------------------ 604

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F 
Sbjct: 605 DEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFG 664

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             I +V+   R+  K +   + Y     G ++  K         + ++ +       + D
Sbjct: 665 VDISQVTPIMRSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLD 724

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512
                                 +  +S +  +++     A+   + G+A +++K A    
Sbjct: 725 NVVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRV 784

Query: 513 ---------KHQGVLQLWKDL 524
                    K + +LQ+  +L
Sbjct: 785 YKKLKENNLKSRIILQVHDEL 805



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
            + ++  +    R       V       V     +   L   + K    Y+    S    
Sbjct: 699 KISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRK---RYIKDIKSTNKN 755

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R Y  ++  N  +Q  + DI+   M    K          I+L VHDE++ E+P     
Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 816 IVKEIVK 822


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 141/402 (35%), Gaps = 68/402 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E  L  +   +   G  ID D +    + + ++ +K+  +I +       +     
Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF-NIGSPK 487

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----T 294
            L   LF    +     ++       +   +  L     +  L +   A+ KL       
Sbjct: 488 QLGSVLFEKLALPSAKKTK--TGYSTNADVLESLMDKHPIVPLITEYRALTKLQNTYVTG 545

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V  DGR+  T +    +RTGR S      QN+P +                     
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRT-------------------- 584

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R    A +G  LV AD + IE RVLA I+G++   KAF +G DI+  T +
Sbjct: 585 ----PLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470
           + FN PI+ V+ + R+  K +   + Y  GA    K            ++ +       +
Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIRSYLSKYSGIA 700

Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509
            + +   A++      +                          A    + GTA +++K A
Sbjct: 701 QYMELTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIA 760

Query: 510 W-----RAKHQG-----VLQLWKDLTEGFACVVQEGGSISAR 541
                 R K  G     +LQ+  +L         E  ++  +
Sbjct: 761 MIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAEKVALLLK 802



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 35/228 (15%)

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           S    ++Q              +  A+  +L +   Y +  ++     +  E++KKA+  
Sbjct: 571 SSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLD 630

Query: 513 K------------HQGVLQLWKDLTEGFACV------------VQEGGSISARRVANVPR 548
                        +Q +  +  DL      V            + +   +S  + +   R
Sbjct: 631 GVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIR 690

Query: 549 LVMRRHKRDVH----IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQ 603
             + ++          V  + R      + G   Y+    ++    + +G ++ +N  +Q
Sbjct: 691 SYLSKYSGIAQYMELTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQ 750

Query: 604 AISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645
             + DI+   M         +G D  ++L VHDE++ E  +     V 
Sbjct: 751 GTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAEKVA 798


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 172/500 (34%), Gaps = 77/500 (15%)

Query: 83  TLGIDIPSKRWICTSVL----ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
            L  ++  K +    +L        G    LK +   LN      K   GK    +    
Sbjct: 392 ALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEILDLKEMLGKGKNKKTFFE 451

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDR 197
             +   +     N      +F      D+   +     LI L +  E+ L  +   +   
Sbjct: 452 LEEDIIFKFISQN------VFAISALYDIFIEKAKENNLISLYENVEKPLVKVLADMEKT 505

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D + +++L E  ++     ++ + +L   +  +      L + LF   G+ +V  +
Sbjct: 506 GVLVDRNKIIELNEEYSKLAYLYEQKVYELAGEVF-NLNSPKQLGVILFEKIGLPVVKKT 564

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L   +      D IL   + +      L+ + E +  DGR+R + +    
Sbjct: 565 KTGYSTDVEVLEKLSKKHEIVDYILKYRSLNKLISTYLDGILEYIMDDGRVRTSFK-QMI 623

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +                              +R   +A   K
Sbjct: 624 TATGRLSSVDPNLQNIPIRS------------------------EEGKNIRKVFVADKNK 659

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             + AD + IE RVLA ++ +   I +F N  DI+  T ++ F  PI++V+  QR   K 
Sbjct: 660 VFIDADYSQIELRVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKA 719

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474
           +   + Y     G +K      +     +  +     S  ++ +                
Sbjct: 720 VNFGIVYGISDYGLSKDLNITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKKDGFVTTIL 779

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQ 519
                  +  S +  ++      A+   + G+A +++K A    ++           +LQ
Sbjct: 780 DRKRYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQ 839

Query: 520 LWKDLTEGFACVVQEGGSIS 539
           +  +L     C   E  ++ 
Sbjct: 840 IHDEL--IVECEESEKETVK 857



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHD 630
            Y+    S+    R++G ++  N  +Q  + DI+   M          K    ++L +HD
Sbjct: 783 RYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHD 842

Query: 631 EIVSETPDTPYFSVGTL 647
           E++ E  ++   +V  +
Sbjct: 843 ELIVECEESEKETVKKI 859


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/546 (17%), Positives = 189/546 (34%), Gaps = 82/546 (15%)

Query: 28  AVITLCA--YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFE-RILFKK 82
               L    Y  D+EPV     T++  +    DL++  ++E      +   F+ +     
Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINKLSFDIKPCIYH 378

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCK 137
            +   I         V+      PS       ++    + +     +   GK    +   
Sbjct: 379 LMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTIL 438

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIND 196
            S +         N+V  + +F       + E   E    L    D E  L  +   +  
Sbjct: 439 ESDEKEI-----DNYVVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCDMEF 491

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +  + ++++ EL   E K +++ + +L    I +   +  L   LF    + ++  
Sbjct: 492 TGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKK 550

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
           ++    T + +L   +      D IL     +      ++ + + +  DG++  T Q   
Sbjct: 551 NKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKEDGKIHTTFQQTI 610

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A +TGR S      QN+P +                              +R   + S G
Sbjct: 611 A-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVPSEG 645

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+ AD + IE RVLA +A ++  I AF +G DI+  T ++ F    DKV+  QR+  K
Sbjct: 646 NMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAK 705

Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------- 474
            +   + Y  G    +K            ++ +    K    + +               
Sbjct: 706 AVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETI 765

Query: 475 ------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518
                   + +S +  ++      A+   + G+A +++K A             K + +L
Sbjct: 766 MNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLIL 825

Query: 519 QLWKDL 524
           Q+  +L
Sbjct: 826 QVHDEL 831



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++          +  + + +  +  V I           + +    Y+    S+    
Sbjct: 726 ITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRR---RYIPELKSKNYNV 782

Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M       N  K    ++L VHDE++ + P      
Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREK 842

Query: 644 VGTLCS-LMTKNPS 656
           V  +   +MT    
Sbjct: 843 VLEIMKDVMTHAVD 856


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/515 (18%), Positives = 180/515 (34%), Gaps = 88/515 (17%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I    YA+ DE V  + +TE + +   L + L  ET+  +  N+  E  L     GI++
Sbjct: 345 EIL---YAFQDESVYSY-KTENNKIADALKEILESETIEKLFINAK-ESSLALLCAGIEV 399

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            +  +    +LA     PSS       +   E    M+E       F +  I        
Sbjct: 400 KNISFE--PLLAYYLLQPSSSLPDLEEIFSRELDIGMQE-------FSQDQI-------- 442

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVL 207
               V+  +LF     RD+   +     L  L  + E  L  +   +   G +ID D + 
Sbjct: 443 --LAVETIKLFK---LRDILIKKLKDDSLYDLFKNMELPLIKVLAQMEYNGVKIDKDWLQ 497

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           +L + + +  + + +   +L      +      L   LF   G+ ++  ++       + 
Sbjct: 498 QLSDKLEKRLEIITKKAHELAGEDF-NLNSPKQLGEILFEKLGLPVIKRTKTG--YSTNA 554

Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
           + + +L     +  L S    + KL     ++L   ++   G++  +      + TGR S
Sbjct: 555 NVLEKLEGKHPIIPLISEYRELAKLKSTYIDSLPPLINSETGKIHTSFN-QMVTATGRLS 613

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P +                              +R   I S +   L+  D
Sbjct: 614 STNPNLQNIPIRT------------------------EEGREIRKAFIPSSDNMILLAVD 649

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RV A ++G+    +AF +G DI+  T ++ F    ++VS   R   KV+   L 
Sbjct: 650 YSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVINFGLA 709

Query: 441 YQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------W 475
           Y   A    +            + ++ +       + D                      
Sbjct: 710 YGMSAYGLSQDLDIPVEEAQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRYI 769

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +  S +   +      A+   + GTA +++KK+ 
Sbjct: 770 PEINSSNYHRRSFAERSAINTPVQGTAADIMKKSM 804


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G+++D + + +  + I  +  KL+  I ++      +      L 
Sbjct: 451 IEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWF-NINSPKQLS 509

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + +V  ++    T   +L           LIL+    +         L +A+
Sbjct: 510 YILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTTYCQGLVQAI 569

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+       G + TGR +      QN+P +                         
Sbjct: 570 NPATGRIHTNFIQTG-TATGRLASAEPNLQNIPVKY------------------------ 604

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F 
Sbjct: 605 DEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFG 664

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             I +V+   R+  K +   + Y     G ++  K         + ++ +       + D
Sbjct: 665 VDISQVTPIMRSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPRVKEYLD 724

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512
                                 +  +S +  +++     A+   + G+A +++K A    
Sbjct: 725 NVVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRV 784

Query: 513 ---------KHQGVLQLWKDL 524
                    K + +LQ+  +L
Sbjct: 785 YKKLKENNLKSRIILQVHDEL 805



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
            + ++  +    R       V       V     +   L   + K    Y+    S    
Sbjct: 699 KISRKEAAEFINRYFEKYPRVKEYLDNVVKFARENGFVLTIFNRK---RYIKDIKSTNKN 755

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R Y  ++  N  +Q  + DI+   M    K          I+L VHDE++ E+P     
Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 816 IVKEIVK 822


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/492 (16%), Positives = 171/492 (34%), Gaps = 74/492 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D+ +     ++    +  K      I  +      ++A     P+       
Sbjct: 363 EAFKKWLADDEMRKYTFDAKRAIVALK---WKGIEIQGIYFDLLIAAYLLDPADTDKDFR 419

Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170
           A      + KM+E  A+      + KG+  + P     A HV +   +  +  K  VE  
Sbjct: 420 A------VAKMKETHAVKSDEEVYGKGAKRAVPAQDIVAEHVARKVHVLYDVQKTFVE-E 472

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +  ++    ++ E  L  +   +  +G  +D + +  + + +A   K+++++I +L   
Sbjct: 473 LQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGT 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L + LF    + ++  ++       S   + +L +   +         + 
Sbjct: 533 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMEHHEIIPKILHYRQLG 589

Query: 291 KLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KLN+     L + V  D  ++         ++TGR S      QN+P +           
Sbjct: 590 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 637

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   I S  G  +  AD + IE RVLA IA +   ++AF 
Sbjct: 638 -------------LEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 684

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +  DI+  T    F    D+V+   R   K +   + Y     G ++         G  +
Sbjct: 685 HDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 744

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                       +  S +  ++      A+   +
Sbjct: 745 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 804

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 805 QGSAADIIKKAM 816



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        + G    ++L VHDE++ E P      +  L   +M   
Sbjct: 804 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 863

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 864 IELA--VPLKVD 873


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/546 (17%), Positives = 187/546 (34%), Gaps = 108/546 (19%)

Query: 29  VITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
              +     ++    + D      + +    + L  ++ DETV  V H+S        K 
Sbjct: 340 EYLILG---EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY 396

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
              DI  + +   + +A    + SS  N               E   LI RF +  I S 
Sbjct: 397 ---DIDIQGFDFDTAIAAYL-IDSSKANY--------------EVFDLINRFLEKDIKSD 438

Query: 144 PYD----CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
             D    C+        +L     K D++   EL+ +       E  L  +  ++   G+
Sbjct: 439 SNDLKAICSSYLKKLYEKLKEMLHKEDMD---ELYYK------VEHPLIYVLSSMESIGF 489

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +I+ D + +L+    ++ +K +++I +L D    +      L   LF    + ++  ++ 
Sbjct: 490 KINQDKLEELRVKFKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKT 548

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGA 314
                 +   + +L     +         I K+N+     L   +  DG +         
Sbjct: 549 G--YSTNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFN-QTV 605

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           + TGR S      QN+P +                              +R   I  +  
Sbjct: 606 TTTGRLSSTEPNLQNIPIKY------------------------EMGKEIRKVFIPQDSD 641

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+  D + IE RVLA +A +   I AF +  DI+  T ++ F  P+D+V+   R+  K
Sbjct: 642 DILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAK 701

Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------------- 475
            +   + Y       A+  K         +  + +       + ++              
Sbjct: 702 AVNFGIVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTI 761

Query: 476 -------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQG---VL 518
                   + +S +  ++      A+   + G+A +++K A        R K+     +L
Sbjct: 762 LNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELIL 821

Query: 519 QLWKDL 524
           Q+  +L
Sbjct: 822 QVHDEL 827


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 138/402 (34%), Gaps = 63/402 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E  L  +   +   G  +D D++   ++   ++  + +    +L      +     
Sbjct: 433 YTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPK 492

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA--SSGSAILK----LN 293
            L+  LF     D+    +       +   I QLA       L    +     K    L 
Sbjct: 493 QLQAVLFDT--FDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLE 550

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L + +  DGR+  T      + TGR S      QN+P +  +                 
Sbjct: 551 GLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA----------------- 592

Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++   
Sbjct: 593 -------GRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYV 645

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            +K F+ P+D+V+ E R   K M   L Y     G ++     A      ++ + +    
Sbjct: 646 GSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMESYFERFGG 705

Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507
              + D    ++                      +   ++     A+   + GTA +++K
Sbjct: 706 VKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIK 765

Query: 508 KAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545
            A     + +     ++   + +     V  G +   +R+  
Sbjct: 766 VAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILE 807



 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656
           +Q  + DI+   M    K        ++L VHDE+V E        V  +    M K   
Sbjct: 756 IQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILEREMDKAIE 815


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 168/483 (34%), Gaps = 70/483 (14%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALN 117
            DE+      +S    ++  +  GI++  K     ++LA     P +    + +      
Sbjct: 365 EDESKKKWVFDSK-RSVVALRWQGIEL--KGTEFDALLAAYIINPGNSYDDVASVAKEYG 421

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +  ++K E      A + KG+  + P +   A+H+          +  +    +   +L
Sbjct: 422 LNI-VSKDE------AVYGKGAKHAVPAEKELADHLARKAAAVNSLRDKLLHALKENNQL 474

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
               D E  L L+   +   G ++D++ + ++ E +  + K+ +E I  +      +   
Sbjct: 475 ELYEDLELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIAGEPF-NINS 533

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L + LF   G+ +V  ++    T   +L            IL            +  
Sbjct: 534 PKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLADKHDIVAYILQYRQIGKLQSTYIEG 593

Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L +    D  ++         ++TGR S      QN+P +                    
Sbjct: 594 LLKVTRKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   + S    L+  AD + IE RVLA I+ ++  I+AF N  DI+  T
Sbjct: 633 ----LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKT 688

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
               F+   D+V++  R   K +   + Y     G ++         G  + ++ ++   
Sbjct: 689 AMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG 748

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + +                       +  S +  ++      A+   + G+A +++K
Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIK 808

Query: 508 KAW 510
           KA 
Sbjct: 809 KAM 811



 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 20/185 (10%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKD--LTEGFACVVQEGGSISARRVANVPRL 549
             +   + + V +A R +    + G++    D  L++      +E G+   R + + P  
Sbjct: 690 MDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG- 748

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608
           V    +  V               +    Y+   TS+    R++  +   N  +Q  + D
Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRR---RYIPELTSRNFNLRSFAERTAMNTPIQGSAAD 805

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
           I+ + M +             ++L VHDE++ E P      +  L   +M         +
Sbjct: 806 IIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKILEKLVPEVMEHALD--LDV 863

Query: 662 PLKAE 666
           PLKA+
Sbjct: 864 PLKAD 868


>gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
          Length = 886

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/496 (15%), Positives = 165/496 (33%), Gaps = 67/496 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  +L D +           ++   + LG+ +    +    +LA       +  N    L
Sbjct: 365 LKDWLEDASHPKAVFGVKRTQVAANR-LGVHLAGVDF--DLLLASYL---LNTTNNSNDL 418

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELFK 175
               +L + +  +   A + KG+  + P +      H+        + +  +E   +  +
Sbjct: 419 GTVANLHEYQNVQTDEAVYGKGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQ 478

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +    +D E  L L+   +   G R+D   + ++    +Q  K L+E +         + 
Sbjct: 479 QFDLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETF-NI 537

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT- 294
                L + LF   G+ +V  ++    + +    + QL KD  + +       I K+ + 
Sbjct: 538 NSPKQLGVILFEKMGLPVVKKTKTGYSTAVD--VLEQLRKDAPIVQTILDYRQIAKIQST 595

Query: 295 ----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
               L +++  D ++         ++TGR S      QN+P                   
Sbjct: 596 YVEGLLKSIHQDNKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------- 635

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   + S    ++  +D + IE RVLA I+G+    +AF    DI+
Sbjct: 636 -----VRLAEGRKIRQAFVPSHPDWQMFASDYSQIELRVLAHISGDANMQEAFKEDRDIH 690

Query: 410 VTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
             T  K F     D+V+ + R   K     + Y     G ++            +  + +
Sbjct: 691 ANTAMKIFGLNSADEVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRQEAKRFIDAYFE 750

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  F                            + +  ++      A+   + G+A 
Sbjct: 751 QYPGVQQFMVDIVKKAREEGYVETLFHRRRYLPDIHAKNFNLRSFAERTAMNTPIQGSAA 810

Query: 504 ELVKKAWRAKHQGVLQ 519
           +++K A     Q + +
Sbjct: 811 DIIKVAMILMQQELKK 826


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 140/402 (34%), Gaps = 68/402 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E  L  +   +   G  ID D +    + + ++ +K+  +I +       +     
Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF-NIGSPK 487

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----T 294
            L   LF    +     ++       +   +  L     +  L +   A+ KL       
Sbjct: 488 QLGSVLFEKLALPSAKKTK--TGYSTNADVLESLMDKHPIVPLITEYRALTKLQNTYVTG 545

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V  DGR+  T +    +RTGR S      QN+P +                     
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRT-------------------- 584

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R    A +G  LV AD + IE RVLA I+G++   KAF +G DI+  T +
Sbjct: 585 ----PLGREMRRFFTAKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470
           + FN PI+ V+ + R+  K +   + Y  GA    K            ++ +       +
Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIRSYLSKYSGIA 700

Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509
            + +   A++      +                          A    + GTA +++K A
Sbjct: 701 HYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIA 760

Query: 510 WRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
               +          + +LQ+  +L         E  ++  +
Sbjct: 761 MIKVYNRLKESGLDARLILQVHDELIVEAKEDCAEKVALLLK 802



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +     +L  KA +A + G++          A  + +   +S  + +   R  + ++
Sbjct: 644 NQPIEWVTPDLRSKA-KAVNFGIVY------GIGAFSLSKDIGVSVPKASEYIRSYLSKY 696

Query: 555 KR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
                     V  + R      + G   Y+    ++    + +G ++ +N  +Q  + DI
Sbjct: 697 SGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADI 756

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645
           +   M        ++G D  ++L VHDE++ E  +     V 
Sbjct: 757 IKIAMIKVYNRLKESGLDARLILQVHDELIVEAKEDCAEKVA 798


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 149/477 (31%), Gaps = 76/477 (15%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201
            +   ++F  +  R V+   E  + ++           L D E  L  +   +   G ++
Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           + + +  +Q        +L ++I +L      +      L   LF   G+ L    +   
Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKT 554

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316
               +   + +LA    +         I KL +     L +A+  DG++         ++
Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   + S     
Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKV 434
           L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F     + V+   R   K 
Sbjct: 650 LLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFGIEKAEYVTPNDRRNAKA 709

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475
           +   + Y     G +             +  + +       + +                
Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769

Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                     S +  +++     A+   + G+A +++K A     + + +          
Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    +    V  VP   +   K  V   + S+  L    +  +        ++
Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVPLIADENEGSTWYEAK 878



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  K          ++L VHDEIV E P     +V  +    M   
Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857

Query: 655 PSWAKGLPLKAE 666
            S    +PL A+
Sbjct: 858 IS--LSVPLIAD 867


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVRAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/546 (17%), Positives = 189/546 (34%), Gaps = 82/546 (15%)

Query: 28  AVITLCA--YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFE-RILFKK 82
               L    Y  D+EPV     T++  +    +L++  ++E      +   F+ +     
Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINKLSFDIKPCIYH 378

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCK 137
            +   I         V+      PS       ++    + +     +   GK    +   
Sbjct: 379 LMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTIL 438

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIND 196
            S +         N+V  + +F       + E   E    L    D E  L  +   +  
Sbjct: 439 ESDEKEI-----DNYVVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCDMEF 491

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +  + ++++ EL   E K +++ + +L    I +   +  L   LF    + ++  
Sbjct: 492 TGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKK 550

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
           ++    T + +L   +      D IL     +      ++ + + +  DG++  T Q   
Sbjct: 551 NKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A +TGR S      QN+P +                              +R   + S G
Sbjct: 611 A-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVPSEG 645

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+ AD + IE RVLA +A ++  + AF +G DI+  T ++ F    DKV+  QR+  K
Sbjct: 646 NMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAK 705

Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------- 474
            +   + Y  G    +K            ++ +    K    + +               
Sbjct: 706 AVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETI 765

Query: 475 ------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518
                   + +S +  ++      A+   + G+A +++K A             K + +L
Sbjct: 766 MNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLIL 825

Query: 519 QLWKDL 524
           Q+  +L
Sbjct: 826 QVHDEL 831



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++          +  + + +  +  V I           + +    Y+    S+    
Sbjct: 726 ITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRR---RYIPELKSKNYNV 782

Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M       N  K    ++L VHDE++ + P      
Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREK 842

Query: 644 VGTLCS-LMTKNPS 656
           V  +   +MT    
Sbjct: 843 VLEIMKDVMTHAVD 856


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 156/474 (32%), Gaps = 70/474 (14%)

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDL 187
            F K   D    D     H   +  +  Y        ++L KRL          + E  L
Sbjct: 460 FFGKKKADQIWEDPEEVEHRMHYACYQAYVASRAP--QKLLKRLEEQGMRALYEEVELPL 517

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
                 +   G  ++ + +    + +     +L+E I +       +      L   LF 
Sbjct: 518 VYTLYDMETAGIAVEKEALKSYGDQLVGRINELEEGIYREAGETF-NINSPKQLGEVLFG 576

Query: 248 ITGIDLVDMSE---GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
             G+     ++    T   +L    +  Q+ +D++  R   +       + L++ ++ DG
Sbjct: 577 QLGLPGARKTKTGYSTAADVLDPLAVNYQIVRDVLEFRQ-LTKLKSTYADGLAKVIADDG 635

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  + Q    + TGR S      QN+P +                              
Sbjct: 636 RIHSSFQ-QTVTATGRLSSTEPNLQNIPIR------------------------MELGKE 670

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G   V +D + IE RVLA ++ +   I+A+  G+DI+  T +  F+TP ++
Sbjct: 671 IRRVFPAMEGCVFVDSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEE 730

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           V+ +QR+  K +   + Y     G AK            +  +         + D     
Sbjct: 731 VTDQQRSNAKAVNFGIVYGISAFGLAKDLGISREEAQEYIDGYFAAYPRLHDYLDGLVEF 790

Query: 480 SH--------------------HLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG-- 516
           +                       +MQ Q+    A+   + GTA +++K A    H    
Sbjct: 791 ARKEGYAVTLFGRRRPVPELKNSNFMQRQFGERVAMNAPVQGTAADIIKIAMVRVHDRLA 850

Query: 517 ----VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                 +L   + +       E      R + +       +   ++ I   S R
Sbjct: 851 KEGLRSRLILTVHDELLVETFEQEEQEVREILDQEMRGAAQLSVELEIDTHSGR 904



 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642
           +R +G ++  N  VQ  + DI+   M               ++LTVHDE++ ET +    
Sbjct: 817 QRQFGERVAMNAPVQGTAADIIKIAMVRVHDRLAKEGLRSRLILTVHDELLVETFEQEEQ 876

Query: 643 SVGTLCSL 650
            V  +   
Sbjct: 877 EVREILDQ 884


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/543 (14%), Positives = 173/543 (31%), Gaps = 98/543 (18%)

Query: 25  AEQAVIT-----------LCAYAWDDEPVKLW-----DRTEQSAMPSDLLQYLRDETVMC 68
           A+                + A+AW +   K++     D   +   P +   + ++     
Sbjct: 326 ADDFFYLETLGENYHREQIVAFAWGNSE-KIYVSKNLDLLTEMKFPENTYDFKKN----- 379

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE--HLTKME 126
                   R+L      ++I        ++LA+     +            +  HL   E
Sbjct: 380 --------RVLLSH---LNIELPLVKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDE 428

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E       F KG+  + P D    +H+          K  + A     ++   LSD E  
Sbjct: 429 EI------FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELP 482

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +   G  +  + + ++     ++   L  +I  L      +      L + LF
Sbjct: 483 LAEVLAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILF 541

Query: 247 LITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
               + +   ++      +  +   + ++ +   ++  R   +      +  L   ++ D
Sbjct: 542 EKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQI-NKEQSTYVKGLIPQIADD 600

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 601 GKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------------------VRLEEGR 635

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI- 421
            +R   + S    L+ +D + IE RVLA I+ ++  I AF +G DI+ +T  + F     
Sbjct: 636 KIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKA 695

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           + V+   R   K +   + Y     G A+            ++ + +      T+ +   
Sbjct: 696 EDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIV 755

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                  + +  ++      A+   + G+A +++K A     + 
Sbjct: 756 REARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKA 815

Query: 517 VLQ 519
           + +
Sbjct: 816 LTE 818



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DIL   M N  K          ++L VHDEI+ + P      +  L    M + 
Sbjct: 797 IQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA 856

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 857 IELA--VPLKVD 866


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/543 (14%), Positives = 174/543 (32%), Gaps = 98/543 (18%)

Query: 25  AEQAVIT-----------LCAYAWDDEPVKLW-----DRTEQSAMPSDLLQYLRDETVMC 68
           A+                + A+AW +   K++     D   +   P +   + ++     
Sbjct: 326 ADDFFYLETLGENYHREQIVAFAWGNSE-KIYVSKNLDLLTEMKFPENTYDFKKN----- 379

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE--HLTKME 126
                   R+L      ++I        ++LA+     +            +  HL   E
Sbjct: 380 --------RVLLSH---LNIELPLVKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDE 428

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E       F KG+  + P D    +H+          K  + A     ++   LSD E  
Sbjct: 429 EI------FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELP 482

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +   G  +  + + ++     ++   L  +I  L      +      L + LF
Sbjct: 483 LAEVLAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILF 541

Query: 247 LITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
               + +   ++      +  +   + ++ +   ++  R  +   +   +  L   ++ D
Sbjct: 542 EKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQST-YVKGLIPQIADD 600

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 601 GKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------------------VRLEEGR 635

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI- 421
            +R   + S    L+ +D + IE RVLA I+ ++  I AF +G DI+ +T  + F     
Sbjct: 636 KIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKA 695

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           + V+   R   K +   + Y     G A+            ++ + +      T+ +   
Sbjct: 696 EDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIV 755

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                  + +  ++      A+   + G+A +++K A     + 
Sbjct: 756 REARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKA 815

Query: 517 VLQ 519
           + +
Sbjct: 816 LTE 818



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DIL   M N  K          ++L VHDEI+ + P      +  L    M + 
Sbjct: 797 IQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA 856

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 857 IELA--VPLKVD 866


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/542 (16%), Positives = 185/542 (34%), Gaps = 87/542 (16%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I   A+++    V   D  +      DL +    E      H    + ++     GI+ 
Sbjct: 289 EIKKIAFSFGSNTVY-IDIFQIE----DLKEIFEKEEFEFTTHEIK-DFLVKLSYKGIEC 342

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDS 142
            SK +I T+++A       S  +    L          +     +G+             
Sbjct: 343 KSK-YIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIREDVL 401

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y C+R  H+   +              ++ K L    + E  L  + +++   G+ +D
Sbjct: 402 ADYICSRCVHLFDLREKLMNFIE----EMDMKKLL---LEIEMPLVEVLKSMEVSGFTLD 454

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
            +++ +L + I     ++ + I K       +      L  +LF    + ++  ++    
Sbjct: 455 KEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEKLNLPVIKKTKTGYS 513

Query: 260 TLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L        +  D+I  R   +      ++     +  + R+    +    + TG
Sbjct: 514 TDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDENNRVHSNFK-QMVTATG 571

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P +E                             +R   I       +V
Sbjct: 572 RISSTEPNLQNIPIRE------------------------EFGRQIRRAFIPRTKDGYIV 607

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P++KV+ E R   K +  
Sbjct: 608 SADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF 667

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
            + Y     G ++  K         +  + +  K    + +                   
Sbjct: 668 GIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRR 727

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK 522
               +  S +   + Q    A+   + G+A +++K A             K Q +LQ+  
Sbjct: 728 RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHD 787

Query: 523 DL 524
           +L
Sbjct: 788 EL 789



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 17/200 (8%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523
            + S    +   +  +H    +     F   + + + TA E+ K         + +  K 
Sbjct: 605 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKA 664

Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR----DVHIVLPSSRRLVYSDVK 574
           +  G    + + G      IS +           R+K        IV  +      + + 
Sbjct: 665 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIM 724

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLT 627
               Y+    S+   +R+   +L  N  +Q  + DI+   M    ++         ++L 
Sbjct: 725 NRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQ 784

Query: 628 VHDEIVSETPDTPYFSVGTL 647
           VHDE+V +T       V  +
Sbjct: 785 VHDELVVDTYKDEVDIVKKI 804


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/487 (18%), Positives = 160/487 (32%), Gaps = 115/487 (23%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           +S  +  L  +   +   G  +D  ++ +  E  + E   + ++I KL      +     
Sbjct: 521 VSQVDLPLVEVLTQMERDGVAVDEAVLQRQTEAFSSEIADIADEIYKLAGHEF-NLNSPR 579

Query: 240 ALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF   G+      +    T    L H        DLIL     S      +  L 
Sbjct: 580 QLAEVLFNELGLPGGKKLKSGYSTSAEDLMHLQDLHPIVDLILRYRMLSKLLSTFIVGLH 639

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +++D R+  T      ++TGR S      QN+P +                       
Sbjct: 640 KYIAADHRIHTTF-HQTLTQTGRLSSSDPNLQNIPART---------------------- 676

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R+  IA+ G  L+ AD + IE R+LA ++G+   +KAFA  EDI+  T A+ 
Sbjct: 677 --EEGRRIRAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARV 734

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F+     V+ E R +GK +  ++ Y   A    ++A    + + +    +          
Sbjct: 735 FHMDPVDVTSEHRRVGKTINFSIVYGISA---FSLAQDLHISVAEAKNYIAE-------- 783

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                                            + A +  +     DL E     +    
Sbjct: 784 ---------------------------------YYATYPQIKAYLNDLVERAK--IDGYV 808

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
               +R   +P L  + + R +                G+   +NT              
Sbjct: 809 ETMFKRRRYIPELKSKNYNRRLF---------------GERVAMNTP------------- 840

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649
                +Q  + DI+   M N  +          ++L +HDE+V E P+  +  V  L   
Sbjct: 841 -----IQGTAADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRN 895

Query: 650 LMTKNPS 656
            M +   
Sbjct: 896 EMERVID 902


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/503 (15%), Positives = 171/503 (33%), Gaps = 82/503 (16%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           T+ +       ++L D  +     ++    +  K   GID+    +    ++A       
Sbjct: 363 TDIALNSDAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL---- 415

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L  A    +F   + KM+E  A+     K   +       RA  V   ++  E+  R V
Sbjct: 416 -LDPADTDKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKV 466

Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
               ++ +  +            ++ E  L  +   +  +G ++D + +  + E +A   
Sbjct: 467 HVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRL 526

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+++++I KL      +      L + LF    + ++  ++    +     +      ++
Sbjct: 527 KEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI 585

Query: 278 I---LNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           I   L+           +  L + V  D  ++         ++TGR S      QN+P +
Sbjct: 586 IPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWI 392
                                         +R   +    G  +  AD + IE RVLA I
Sbjct: 645 ------------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHI 680

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           A +   ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++  
Sbjct: 681 ANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNL 740

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487
                     ++++ ++      + D                       +  S +  ++ 
Sbjct: 741 GITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRS 800

Query: 488 QYPEFAVKDKLIGTACELVKKAW 510
                A+   + GTA +++KKA 
Sbjct: 801 FAERTAMNTPIQGTAADIIKKAM 823


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 165/507 (32%), Gaps = 99/507 (19%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  +    +++  +  L     GI+I    +    +LA     P     +      S   
Sbjct: 390 DSKIKKCCYDTKADLWLL-HYYGIEINQPGF--DVMLADYLLNPGKSARSLPETALSHLD 446

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE---LFKRLIP 179
             ++EG                Y    A          E   R V+  +    L ++   
Sbjct: 447 IVLQEGSE-------------TYLPASA----------EVISRLVDILQSKLLLQEQENL 483

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D E  L  +  ++   G  +D + +  + E + ++ + L  DI +     I +   T 
Sbjct: 484 YYDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQVLTTDIYEHAGE-IFNINSTK 542

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            L   LF    +     ++         + + +LA D  +  L      + KL     + 
Sbjct: 543 QLGSILFEKLKLKAGKKTK--TGYSTDVTVLEELAGDHPVVSLLLEYRQLAKLKSTYVDG 600

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L+  ++   G+L  T      + TGR S      QN+P +                    
Sbjct: 601 LTGLINPQTGKLHTTF-HQAVTATGRLSSSEPNLQNVPIR-------------------- 639

Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                 A   +R   +       +  AD + IE R+LA IA ++  + AFA  +DI+  T
Sbjct: 640 ----LDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRT 695

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            ++ F   +D+V+ E R   K +   + Y     G AK  K      G  +  +      
Sbjct: 696 ASEVFGVAMDEVTPEMRGRAKAVNFGIVYGISDFGLAKDIKVTRKEAGRYINNYFNRYSG 755

Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507
              + D    E+                      +  ++      A+   + G+A +++K
Sbjct: 756 VKAYIDRVIREAREKGYVTTILNRRRYLPDLFSSNRVVRSFGERTAMNTPIQGSASDIIK 815

Query: 508 KAW----------RAKHQGVLQLWKDL 524
            A           +     +LQ+  +L
Sbjct: 816 LAMVLIYREMRKRKLSSTMILQVHDEL 842


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 138/419 (32%), Gaps = 59/419 (14%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                 +    +        +D E  L  +   +   G  +D+D++   ++   ++  + 
Sbjct: 461 MELAEKLTTELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQ 520

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +    +L      +      L+  LF    +     ++    +         +       
Sbjct: 521 ERSARELAGDDKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFL 580

Query: 281 RLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               +     K    L  L + V  DGR+  T      + TGR S      QN+P +  +
Sbjct: 581 DHLLAHREYQKMKTTLEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA 639

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395
                                      +RS  I   G ++L+ AD + IE RV+A ++ +
Sbjct: 640 ------------------------GRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSAD 675

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+A+  GED++    ++ F+ P+D+V+ E R   K M   L Y     G ++     
Sbjct: 676 PGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIP 735

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
           A      ++ + +       + D    ++                      +   ++   
Sbjct: 736 AGEAKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAE 795

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545
             A+   + GTA +++K A     + +     ++   + +     V  G +   R +  
Sbjct: 796 RAALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQVREILE 854


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 156/483 (32%), Gaps = 66/483 (13%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
            DE       N+    +        DI  +       +A     PS  S + A ++    
Sbjct: 360 NDEKNEKWIFNAKQAIVSL---GWNDISLRGVTFDIQIASYLIDPSASSHEMADISNRKR 416

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            +  K +E     A + KG     P +   A H+          K ++E+  +  ++   
Sbjct: 417 SYTVKSDE-----AVYGKGKKRQVPEEEIVAQHLVRKAAAINVLKEELESELKENEQFEL 471

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D E  L ++   +   G  I+ + +L++ E ++ +   ++++I +L      +     
Sbjct: 472 FKDLEMPLSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGVEF-NINSPK 530

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + +V  ++    T   +L          + IL            +  L 
Sbjct: 531 QLGEILFDKLQLPVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQLGKLNSTYIEGLL 590

Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + +    G++         ++TGR S      QN+P +                      
Sbjct: 591 KVIHQKSGKIHTIFN-QALTQTGRLSSTEPNLQNIPIR---------------------- 627

Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +       +  AD + IE RVLA I+ ++    AF    D++  T  
Sbjct: 628 --LEEGRKIRRAFVPERENAVIFAADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAM 685

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             F+   D+V+   R   K +   + Y     G ++            + ++  +     
Sbjct: 686 DVFHVSADEVTSLMRRTAKAVNFGIVYGISDYGLSQNLGITRKEAKKFIDRYFDSYPGVK 745

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                       +  S +  ++      A+   + G+A +++KKA
Sbjct: 746 EYMESIVEEARVNGYVTTMLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKA 805

Query: 510 WRA 512
              
Sbjct: 806 MVK 808


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 124/367 (33%), Gaps = 55/367 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D +  L  +   +   G RID+D + ++   +A+E   +   + +L      +      L
Sbjct: 506 DIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELAGEEF-NLDSPKQL 564

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF   G+     ++    T    LS           IL     +      +  L   
Sbjct: 565 SVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYRELAKMESTYIEALPRM 624

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            + DG +         + TGR S      QN+P +                         
Sbjct: 625 RAGDGLVHTHFN-QTVTTTGRLSSSDPNLQNIPVRT------------------------ 659

Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R C +    G   + AD + IE R+LA ++ ++  + AF +G D + +T A+ F
Sbjct: 660 EFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAARVF 719

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P+++V+   R+  K +   + Y     G A+            + ++ +       F 
Sbjct: 720 GVPLEEVTPSMRSRAKAVNFGIVYGQQAFGLAQNLGIGFKEAQEMIDRYFEAYPGVRAFL 779

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D                       + ++ +   +      A+   + G+A ++VK A   
Sbjct: 780 DGTVEEVRACGYATTMFGRRRHIPELKAKNPAQRGFGERTAMNHPMQGSAADIVKMAMNE 839

Query: 513 KHQGVLQ 519
             + ++ 
Sbjct: 840 VQRRLVD 846


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 108/630 (17%), Positives = 201/630 (31%), Gaps = 128/630 (20%)

Query: 48  TEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           T+   +  D+        L          N+ F+R++F   L   I     +   +LA  
Sbjct: 426 TKGENLSQDIVLTALRPILESADYPKTFQNAKFDRLVF---LVQGINLTGVVFDPMLASY 482

Query: 103 NGLPSS------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
              P +      L    L L    ++  + +GK  IA     ++ +          +Q +
Sbjct: 483 VLNPDTSHNLTDLTQRYLGLTIQNYVDLVPKGKT-IADINISAVANYCC-------LQVY 534

Query: 157 QLFGEYCK--RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             F    K   ++  T  L K L    + E+ L  +  T+   G RID   + +L + + 
Sbjct: 535 ATFQLVAKLREELAKTPNLDKLLR---EVEQPLESVLATVEYTGVRIDSAYLHELSQQLE 591

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
            +  KL E   +L      +      L   LF   G+      +         + + +L 
Sbjct: 592 IDLAKLQEQATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQ 650

Query: 275 K-------DLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQ 326
           +       + I      S      ++ L   V  D  R+        A+ TGR S     
Sbjct: 651 EVDETGFVNAITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFN-QTATSTGRLSSSNPN 709

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P +                           S  +R   +  +G  +  AD + IE 
Sbjct: 710 LQNIPIRT------------------------AFSRQIRKAFLPKSGWLMAAADYSQIEL 745

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA ++ E   ++A+   EDI+  T    F    D ++ ++R I K +   + Y  G+ 
Sbjct: 746 RILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--DDINSDERRIAKTINFGVIYGMGS- 802

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                +   G+D    ++ +K  +  E + +  ++   ++ Q       + ++G      
Sbjct: 803 --LKFSRSTGIDKNVANEFIKRFN--ERYAKIFAYLEGVKKQAISLGYVETILG------ 852

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                           D T            I   ++ N                     
Sbjct: 853 ---------RRRYFNFDSTSLLNLKGSNPEDIDLSKLKN--------------------- 882

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GY 622
                        L    + L+R            +Q  S DI+   M    +       
Sbjct: 883 -------------LGAKDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQA 923

Query: 623 DIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651
            ++L VHDE+V E P   +  +   + S+M
Sbjct: 924 RLLLQVHDELVFEVPPQEWAELQPQIKSVM 953


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/492 (16%), Positives = 171/492 (34%), Gaps = 74/492 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D+ +     ++    +  K      I  +      ++A     P+       
Sbjct: 356 EAFKKWLADDEMRKYTFDAKRAIVALK---WKGIEIQGIYFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170
           A      + KM+E  A+      + KG+  + P     A HV +   +  +  K  VE  
Sbjct: 413 A------VAKMKETHAVKSDEEVYGKGAKRAVPAQDIVAEHVARKVHVLYDVQKTFVE-E 465

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +  ++    ++ E  L  +   +  +G  +D + +  + + +A   K+++++I +L   
Sbjct: 466 LQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGT 525

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L + LF    + ++  ++       S   + +L +   +         + 
Sbjct: 526 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMEHHEIIPKILHYRQLG 582

Query: 291 KLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KLN+     L + V  D  ++         ++TGR S      QN+P +           
Sbjct: 583 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 630

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   I S  G  +  AD + IE RVLA IA +   ++AF 
Sbjct: 631 -------------LEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 677

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +  DI+  T    F    D+V+   R   K +   + Y     G ++         G  +
Sbjct: 678 HDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 737

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                       +  S +  ++      A+   +
Sbjct: 738 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 797

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 798 QGSAADIIKKAM 809



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        + G    ++L VHDE++ E P      +  L   +M   
Sbjct: 797 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 856

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 857 IELA--VPLKVD 866


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 143/437 (32%), Gaps = 62/437 (14%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                  + S     ++  +            S P   T +  V+   +       D  A
Sbjct: 410 NGVARIHDVSLMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAA 469

Query: 170 TRELF-KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            + L  + L  L ++ E  L      +   G  ID   + +       E + + ++I +L
Sbjct: 470 VKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYEL 529

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L + LF    + ++  ++           +  L  +  +     +  
Sbjct: 530 AGETF-NINSPKQLGIILFEKMNLPVIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYR 586

Query: 288 AILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL       L+  ++ +  R+  T      + TGR S      QN+P +        
Sbjct: 587 SVAKLVSTYCEGLAVLINPETHRIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK----- 640

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R+      G   LV AD + IE R+LA ++G++  IK
Sbjct: 641 -------------------GREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIK 681

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +G+DI+  T A+      D+V+ E+R+  K +   + Y     G ++          
Sbjct: 682 AFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAK 741

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             ++ +         + D    E+H                     +   +      A+ 
Sbjct: 742 NYIELYFSRYPKVKEYMDNMVIEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMN 801

Query: 496 DKLIGTACELVKKAWRA 512
             + GTA +++K A   
Sbjct: 802 TPIQGTAADIIKLAMNK 818


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/542 (16%), Positives = 172/542 (31%), Gaps = 93/542 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
                 D+T   +  N  ++  + K   GI+I +K  +  +++A    +P        LA
Sbjct: 418 FRSLFEDDTKTLIGQNIKYDFQVLKNY-GIEIKNK--LFDTMVAHFLIMPEMRHNMDILA 474

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +  +     E   LI +  K        +  +           EY   D + T +L  
Sbjct: 475 QTYLNYSPVSIE--TLIGKKGKEQTSMRDVEIEKI---------KEYAAEDADVTFQLKT 523

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
              P           ++ E  L  +   I   G  +D+  + +    +  +   ++++I 
Sbjct: 524 AFAPKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQ 583

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                   +      +   LF    I        T +       +++L     +      
Sbjct: 584 DFAGTKF-NVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKILD 642

Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              ++KL     +TL E V+    R+  +     A  TGR S      QN+P +      
Sbjct: 643 YRELVKLKNTYVDTLPELVNEKTKRIHTSFNQVVAV-TGRLSSDNPNLQNIPIRTER--- 698

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   I  +    L+ AD + IE R++A I+G+   
Sbjct: 699 ---------------------GRQIRKAFIPRDSDHVLLSADYSQIELRIVASISGDKNM 737

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454
            +AF  G+DI+  T AK F      V+KE R   K +   + Y  GA    +      + 
Sbjct: 738 CEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQGAFGLSENLNISRTE 797

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493
               +  + +   +  ++ D     +                      +  ++      A
Sbjct: 798 AKELIDNYFKEYGAIKSYMDRTINFARENGYVKTLLGRKRWLRDITSANATVRSYAERNA 857

Query: 494 VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +   + G+A +++K A             K + +LQ+  +L         E       ++
Sbjct: 858 INAPIQGSAADMIKVAMINIYNELEKQNFKTKMLLQVHDELVFDVYKPELEKVKPIIEKL 917

Query: 544 AN 545
             
Sbjct: 918 MR 919


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/541 (17%), Positives = 192/541 (35%), Gaps = 76/541 (14%)

Query: 10   TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67
            T     +   G+  + E+  I L   A ++ PV ++D     + ++ + L + L++E V+
Sbjct: 1310 THCGLDIETTGLEVFDEK--IRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVV 1367

Query: 68   CVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             +  N  F+   L      +D     +I + +L +   +     N  +    +  L K +
Sbjct: 1368 KIIQNGKFDAKFLMHNNFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQ 1427

Query: 127  EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGER 185
            +           +        +        +L  E CK ++E   ++  + ++P+ D E 
Sbjct: 1428 QNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMETVNDIENKCILPICDMEL 1487

Query: 186  DLWLLDQTINDRGYRIDLDLVLK-LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
            +           G  +DL+ + K   E++++   +  +   +L D  I  + Q   L+  
Sbjct: 1488 N-----------GITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQVLKAL 1536

Query: 245  LF----LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
                   I+   + + S+  LK+ L+H  +  L     L +L S+         L + ++
Sbjct: 1537 QNNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRRLYKLYSAF-----YLKLPQHIN 1591

Query: 301  S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                ++  T      + +GR+S      Q +PRQ                          
Sbjct: 1592 KKTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ-------------------------- 1624

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   I       ++AD   IE ++ A I  +D  +KA+ N  D++  T +     
Sbjct: 1625 --KNIREIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKK 1682

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQA 478
            PI  V+KE R I K +   L Y       K  A+          Q      S FE ++  
Sbjct: 1683 PIADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGI 1742

Query: 479  ESHHLWMQDQYP------------------EFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               H  ++                        A+   + GT  +++K +    ++ +  +
Sbjct: 1743 YRWHNQIKQIRGLEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKNLKPI 1802

Query: 521  W 521
             
Sbjct: 1803 H 1803



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 576  DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDIVLTVHDE 631
               Y   +  +++       K     VQ    DIL   +    KN       I+L VHDE
Sbjct: 1754 GLEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKNLKPIHGKIILCVHDE 1813

Query: 632  IVSETPDT-PYFSVGTLCSLM 651
            I+ E        ++  L   M
Sbjct: 1814 IIIEVDKKYQEDALKILVESM 1834


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 110/627 (17%), Positives = 199/627 (31%), Gaps = 153/627 (24%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L          N+ ++R++  +     +     +  ++LA        L++A        
Sbjct: 465 LASPQHPKALQNAKYDRLILLRH---GLTLNGVVIDTLLADY------LRDAAAKHGLD- 514

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ-AWQLFGE--------YCKRDVEATR 171
               M E       F         +  T    +    Q F +        YC  DV  TR
Sbjct: 515 ---LMSE-----REFG--------FRPTTYGDLVGKKQTFADVAIEPASLYCGMDVHVTR 558

Query: 172 ELF-----------KRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            L             +L+PL +  E+ L  +   +   G RID+  +  L + +     +
Sbjct: 559 RLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNR 618

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L+ D  ++ +     +     L   LF   G+D               + + +L  D  +
Sbjct: 619 LETDAKQVAEVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLENDHPV 677

Query: 280 NRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L      + KL     + L + V +  GR+         + TGR S      QN+P +
Sbjct: 678 VPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVR 736

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                      S  +R   +   G  L+ AD + IE R+L  ++
Sbjct: 737 T------------------------EYSRRIRKAFLPQEGWTLLSADYSQIELRILTHLS 772

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           GE+   +A++ G+D++  T     +   D VS ++R +GK +   + Y  GA+ F   A 
Sbjct: 773 GEEVLQEAYSTGDDVHALTARLLLDK--DDVSADERRLGKTINFGVIYGMGAQRF---AR 827

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+   +  + +        ++Q         +     A+    + T            
Sbjct: 828 ETGVSSAEAKEFL------TKYKQRYPKVFAFLELQERLALSRGYVET------------ 869

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYS 571
                                   +  RR  +  R  + R   K  + I L  +RR    
Sbjct: 870 -----------------------ILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARR---- 902

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625
                        +Q +R            +Q  S DI+   M               ++
Sbjct: 903 ---------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAVLLSQGIPARLL 947

Query: 626 LTVHDEIVSET-PDTPYFSVGTLCSLM 651
           L VHDE+V E  PD    +   + + M
Sbjct: 948 LQVHDELVLEVAPDALDTTRNLVVNTM 974


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 466 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 525

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 526 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 584

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 585 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 641

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 642 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 679

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 680 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 739

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 740 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 799

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 800 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 851

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 852 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 889


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 140/402 (34%), Gaps = 68/402 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E  L  +   +   G  ID D +    + + ++ +K+  +I +       +     
Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF-NIGSPK 487

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----T 294
            L   LF    +     ++       +   +  L     +  L +   A+ KL       
Sbjct: 488 QLGSVLFEKLALPSAKKTK--TGYSTNADVLESLMDKHPIVPLITEYRALTKLQNTYVTG 545

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + V  DGR+  T +    +RTGR S      QN+P +                     
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRT-------------------- 584

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R    A +G  LV AD + IE RVLA I+G++   KAF +G DI+  T +
Sbjct: 585 ----PLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470
           + FN PI+ V+ + R+  K +   + Y  GA    K            ++ +       +
Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIRSYLSKYSGIA 700

Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509
            + +   A++      +                          A    + GTA +++K A
Sbjct: 701 HYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIA 760

Query: 510 WRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541
               +          + +LQ+  +L         E  ++  +
Sbjct: 761 MIKVYNRLEESGLDARLILQVHDELIVEAKEDCAEKVALLLK 802



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 35/228 (15%)

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           S    ++Q              +  A+  +L +   Y +  ++     +  E++KKA+  
Sbjct: 571 SSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLD 630

Query: 513 K------------HQGVLQLWKDLTEGFACV------------VQEGGSISARRVANVPR 548
                        +Q +  +  DL      V            + +   +S  + +   R
Sbjct: 631 GVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIR 690

Query: 549 LVMRRHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQ 603
             + ++          V  + R      + G   Y+    ++    + +G ++ +N  +Q
Sbjct: 691 SYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQ 750

Query: 604 AISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645
             + DI+   M        ++G D  ++L VHDE++ E  +     V 
Sbjct: 751 GTAADIIKIAMIKVYNRLEESGLDARLILQVHDELIVEAKEDCAEKVA 798


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/515 (17%), Positives = 167/515 (32%), Gaps = 68/515 (13%)

Query: 28  AVITLCAYAWD-DEPVKLWDR--TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
             +TL   A   DE V   D    +   + + L  + + +      +N   +    K   
Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVI-TPLKDFFKRKDTEFYGYNIKRDHHALKNA- 381

Query: 85  GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
              I          LA      G   S +   +     E   K   GK          I 
Sbjct: 382 --GIHIDNITLDLALAEHLINGGAKISYQTLLVDHGLMESAGKY--GKEWGQLSL--PIL 435

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             P     A +   +       K+ +    ++        + E  L  +  TI   G  +
Sbjct: 436 KSPAKP--AEYFGEFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLENVLFTIERNGMPL 493

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D++ + +L+  +++E   L +DI  L      + +    L   L+   G+  +D +  T 
Sbjct: 494 DVEDLQELERTLSEELAILTDDIYTLAGASF-NIKSPKQLSDVLYNKLGLTPIDKARSTK 552

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L          + IL   A        +  L   +     R+  T    G + TGR 
Sbjct: 553 AEVLEALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRL 611

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVA 379
           +      QN+P +                              +R            + A
Sbjct: 612 ACQDPNLQNIPIRSER------------------------GRLLRKAFRDTRQNNYFLSA 647

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R LA ++ ++    AF + ED++  T ++ F+ P+++V+K+QR   K +   +
Sbjct: 648 DYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGI 707

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------- 480
            Y     G +K+ K   S     +  +     + + F D   +++               
Sbjct: 708 IYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFIDETISQACENLRVKTLLGRERI 767

Query: 481 -----HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                     +      AV  ++ G+A EL+K A 
Sbjct: 768 IDNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/503 (15%), Positives = 170/503 (33%), Gaps = 82/503 (16%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           T+ +       ++L D  +     ++    +  K   GID+    +    ++A       
Sbjct: 363 TDSALKSDAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL---- 415

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L  A    +F   + KM+E  A+     K   +       RA  V   ++  E+  R V
Sbjct: 416 -LDPADTDKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKV 466

Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
               ++ +  +            ++ E  L  +   +  +G ++D + +  + E +A   
Sbjct: 467 HVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRL 526

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           K+++++I KL      +      L + LF    + ++  ++    +     +      ++
Sbjct: 527 KEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI 585

Query: 278 I---LNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           I   L+           +  L + V  D  ++         ++TGR S      QN+P +
Sbjct: 586 IPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWI 392
                                         +R   +    G  +  AD + IE RVLA I
Sbjct: 645 ------------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHI 680

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           A +   + AF +  DI+  T    F    D+V+   R   K +   + Y     G ++  
Sbjct: 681 ANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNL 740

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487
                     ++++ ++      + D                       +  S +  ++ 
Sbjct: 741 GITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRS 800

Query: 488 QYPEFAVKDKLIGTACELVKKAW 510
                A+   + GTA +++KKA 
Sbjct: 801 FAERTAMNTPIQGTAADIIKKAM 823


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/521 (15%), Positives = 170/521 (32%), Gaps = 70/521 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW ++  +++  T+   + S+  Q    + V        F+R  +    LGID+P+
Sbjct: 337 IIGFAWGNDK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA+                    L    +       + KG+  + P      
Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAVPEKEVLL 445

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +H+       +  K+ +        +   L D E  L  +   +   G ++    + ++ 
Sbjct: 446 SHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPLANVLAKMEIAGIKVKGQTLNEMA 505

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                   KL ++I ++      +      L + LF   G+ L    +       +   +
Sbjct: 506 VENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + +  DG++         ++TGR S    
Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRYV-QDLTQTGRLSSVDP 623

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P                                +R   + S     L+ +D + I
Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTEDAVLLSSDYSQI 659

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G +             +  + +       + D                         
Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDI 779

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            S +  +++     A+   + G+A +++K A     + +++
Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 92/549 (16%), Positives = 182/549 (33%), Gaps = 93/549 (16%)

Query: 5   FIDIETRSPQPLPKV-----GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
            +D ET S   L        G+   A  A  +  ++A           + +  +   L  
Sbjct: 370 AVDTETTS---LKTCEAELAGISLSATPATASFISFARTG-------LSREKTI-ELLRP 418

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---- 115
            L +  +     N  ++ ++ K   G+++    +  T + +      ++     LA    
Sbjct: 419 LLENPAIAKTGQNLKYDLLVLKNY-GLELSPISF-DTMLASYLLNPETTHNLDDLAARHL 476

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATREL 173
            L  +++      GK  +            Y C  A+  ++   +  +    +    R +
Sbjct: 477 KLRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLTAILQKELAEEPNL-RHI 535

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            + L      E  L  +   +  +G  ID   +    E +  +  +L E I         
Sbjct: 536 GETL------EFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKETIHSAAGESF- 588

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L   LF + G+     ++    + +    + +LA    +        ++ K+ 
Sbjct: 589 NIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVE--VLEELAPLHPVVGNLLEYRSLQKIK 646

Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L + ++   GR+  +   +  + TGR S      QN+P                
Sbjct: 647 TTYIDALPKMLNPRTGRVHTSFNQH-ITATGRLSSSNPNLQNIP---------------- 689

Query: 348 NRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                I  PLG     +R   I ++    L+ AD + IE R+ A I+G+   I+AF N E
Sbjct: 690 -----IRTPLG---REIRKAFIPTDPRNLLLSADYSQIELRIAAEISGDGKLIEAFRNRE 741

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T    F+TP   ++ + R   K +   + Y     G +K      S     +  +
Sbjct: 742 DIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYGIQPFGLSKRLNIPRSEAADIISTY 799

Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501
           +          D                          S +  +Q      A+   + GT
Sbjct: 800 TAKYPGLFEALDTIKTTGREKGFVTTLLGRRRYLPNLSSRNGNLQKAAERAAMNTPIQGT 859

Query: 502 ACELVKKAW 510
           A +++K A 
Sbjct: 860 AADIIKCAM 868


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/492 (16%), Positives = 163/492 (33%), Gaps = 74/492 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    + A       + K+ C 
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF-DLLIAAYLLDPADTDKDFCT 427

Query: 115 ALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDVEAT 170
                E   +   EE     A+     +        R  HV     Q F E  K++    
Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKN--EQ 485

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            ELF  L      E  L  +   +  +G ++D + +  + E +A   K+++++I KL   
Sbjct: 486 YELFTEL------ELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASS 285
              +      L + LF    + ++  ++       S   + +L         IL+     
Sbjct: 540 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNILHYRQLG 596

Query: 286 GSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 +  L + V  D  ++         ++TGR S      QN+P +           
Sbjct: 597 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 644

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G  +  AD + IE RVLA IA +   ++AF 
Sbjct: 645 -------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQ 691

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +  DI+  T    F    D+V+   R   K +   + Y     G ++            +
Sbjct: 692 HDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFI 751

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++ ++      + +                       +  S +  ++      A+   +
Sbjct: 752 EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 811

Query: 499 IGTACELVKKAW 510
            GTA +++KKA 
Sbjct: 812 QGTAADIIKKAM 823



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 143/437 (32%), Gaps = 62/437 (14%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                  + S     ++  +            S P   T +  V+   +       D  A
Sbjct: 410 NGVARIHDVSLMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAA 469

Query: 170 TRELF-KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            + L  + L  L ++ E  L      +   G  ID   + +       E + + ++I +L
Sbjct: 470 VKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYEL 529

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L + LF    + ++  ++           +  L  +  +     +  
Sbjct: 530 AGETF-NINSPKQLGIILFEKMNLPVIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYR 586

Query: 288 AILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++ KL       L+  ++ +  R+  T      + TGR S      QN+P +        
Sbjct: 587 SVAKLVSTYCEGLAVLINPETHRIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK----- 640

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R+      G   LV AD + IE R+LA ++G++  IK
Sbjct: 641 -------------------GREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIK 681

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +G+DI+  T A+      D+V+ E+R+  K +   + Y     G ++          
Sbjct: 682 AFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAK 741

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             ++ +         + D    E+H                     +   +      A+ 
Sbjct: 742 NYIELYFSRYPKVKEYMDNMVTEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMN 801

Query: 496 DKLIGTACELVKKAWRA 512
             + GTA +++K A   
Sbjct: 802 TPIQGTAADIIKLAMNK 818


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/492 (16%), Positives = 174/492 (35%), Gaps = 74/492 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D+ +     ++    +  K   GI+I    +    ++A     P+       
Sbjct: 356 EAFKKWLADDEMRKYTFDAKRAIVALK-WKGIEIQGIDF--DLLIAAYLLDPADTDKDFR 412

Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170
           A      + KM+E  A+      + KG+  + P     A HV +   +  +  K  VE  
Sbjct: 413 A------VAKMKETHAVKSDEEVYGKGAKRAVPAQDIVAEHVARKVHVLYDVQKTFVE-E 465

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +  ++    ++ E  L  +   +  +G  +D + +  + + +A   K+++++I +L   
Sbjct: 466 LQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGT 525

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L + LF    + ++  ++       S   + +L +   +         + 
Sbjct: 526 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMEHHEIIPKILHYRQLG 582

Query: 291 KLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           KLN+     L + V  D  ++         ++TGR S      QN+P +           
Sbjct: 583 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 630

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   I S  G  +  AD + IE RVLA IA +   ++AF 
Sbjct: 631 -------------LEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 677

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +  DI+  T    F    D+V+   R   K +   + Y     G ++         G  +
Sbjct: 678 HDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 737

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                       +  S +  ++      A+   +
Sbjct: 738 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 797

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 798 QGSAADIIKKAM 809



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        + G    ++L VHDE++ E P      +  L   +M   
Sbjct: 797 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 856

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 857 IELA--VPLKVD 866


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 137/411 (33%), Gaps = 73/411 (17%)

Query: 174 FKRLIPLSDGERDLWLLD-------------QTINDRGYRIDLDLVLKLQELIAQERKKL 220
            + + PLSD   +L ++D               +  RG  +D   +    + +    ++L
Sbjct: 490 REAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKGYGDQLVGRIEEL 549

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            E I K       +      L + LF    ++    ++    + +    + ++     + 
Sbjct: 550 QESIYKEAGEEF-NINSPKQLGVVLFDHMKLEGAKKTKTGYSTSVE--VLEKIEHLYPII 606

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +      + KL     + L+  +  D R+ G       + TGR S      QN+P +  
Sbjct: 607 PMILEYRQLTKLKSTYADGLANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIPIR-- 663

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +   G   + AD + IE RVLA ++ +
Sbjct: 664 ----------------------MELGRAIRKVFLPEEGYIFLDADYSQIELRVLAHLSQD 701

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
           +  I A+   +DI+  T ++ F  P+D+V+  QR   K +   + Y     G ++  K  
Sbjct: 702 EKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKIS 761

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                  + ++         F D                       + +S +   ++   
Sbjct: 762 RKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGE 821

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
             A+   + GTA +++K A    +  + +  K +       + +   I   
Sbjct: 822 RVAMNSPIQGTAADIIKIAMVRVNMKLKE--KQMKSRLLLQIHDELLIETH 870



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R +G ++  N  +Q  + DI+   M               ++L +HDE++ ET    + 
Sbjct: 816 QRNFGERVAMNSPIQGTAADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFE 875

Query: 643 SVGTL--CSLM 651
            V  +    +M
Sbjct: 876 EVKEILQNEMM 886


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/546 (17%), Positives = 189/546 (34%), Gaps = 82/546 (15%)

Query: 28  AVITLCA--YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFE-RILFKK 82
               L    Y  D+EPV     T++  +    DL++  ++E      +   F+ +     
Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINKLSFDIKPCIYH 378

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCK 137
            +   I         V+      PS       ++    + +     +   GK    +   
Sbjct: 379 LMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTIL 438

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIND 196
            S +         N++  + +F       + E   E    L    D E  L  +   +  
Sbjct: 439 ESDEKEI-----DNYIVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCDMEF 491

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +  + ++++ EL   E K +++ + +L    I +   +  L   LF    + ++  
Sbjct: 492 TGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKK 550

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
           ++    T + +L   +      D IL     +      ++ + + +  DG++  T Q   
Sbjct: 551 NKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A +TGR S      QN+P +                              +R   + S G
Sbjct: 611 A-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVPSGG 645

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+ AD + IE RVLA +A ++  I AF +G DI+  T ++ F    DKV+  QR+  K
Sbjct: 646 NVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAK 705

Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------- 474
            +   + Y  G    +K            ++ +    K    + +               
Sbjct: 706 AVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETI 765

Query: 475 ------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518
                   + +S +  ++      A+   + G+A +++K A             K + +L
Sbjct: 766 MNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLIL 825

Query: 519 QLWKDL 524
           Q+  +L
Sbjct: 826 QVHDEL 831



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++          +  + + +  +  V I           + +    Y+    S+    
Sbjct: 726 ITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRR---RYIPELKSKNYNV 782

Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M       N  K    ++L VHDE++ + P      
Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREK 842

Query: 644 VGTLCS-LMTKNPS 656
           V  +   +MT    
Sbjct: 843 VLEIMKDVMTHAVD 856


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
          Length = 889

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 466 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 525

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 526 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 584

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 585 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 641

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 642 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 679

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 680 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 739

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 740 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 799

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 800 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 851

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 852 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 889


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/496 (16%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 140/409 (34%), Gaps = 65/409 (15%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           RL   ++ E+ L  +   +  RG R+D + +  L   +A+  ++L+  I +       S 
Sbjct: 492 RLKLYTEVEKPLSGVLARMEARGVRLDSEYLQGLSLALAERLERLEAQIHEAAGREF-SI 550

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292
           R    L   L+   G+     ++ T K   + + +  L  +  +  L      + KL   
Sbjct: 551 RSRDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEPLRDEHPIIPLILEYRELEKLRGT 610

Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L   V+   GRL  T     A  TGR S      QN+P +                
Sbjct: 611 YLDPLPRLVNPRTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRS--------------- 654

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   IA  G +LV AD + +E R++A IAG++   +AF  G DI+
Sbjct: 655 ---------EEGRQIRKGFIADGGFRLVAADYSQLELRLMAHIAGDEPMQRAFQEGADIH 705

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQN 465
             T A+        V   QR   K +   + Y   A           +     ++ +   
Sbjct: 706 RRTAAQVLGLDESTVDVNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEATSFIENYFGI 765

Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + +                       + ++ +  +++     A    + GTA +
Sbjct: 766 YPGIQRYIEETLEFGRQHGYVETLYGRRRYVPELKARNRNLREAGERLAYNMPIQGTAAD 825

Query: 505 LVKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           ++K A  A            +LQ+  +L         E  +   R+V  
Sbjct: 826 IMKMAMVALEPQLDALGARMLLQVHDELLIEAPADRAEEVAALTRQVME 874



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 24/234 (10%)

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           S+E R I K         GG   F+ +A+       +   ++      +      +    
Sbjct: 654 SEEGRQIRK----GFIADGG---FRLVAADYSQLELRLMAHIAGDEPMQR-----AFQEG 701

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                   A    L  +  ++ ++  RA       +   +      +  E G   A   +
Sbjct: 702 ADIHRRTAAQVLGLDESTVDVNQR--RAAKTVNFGVLYGM--SAHRLSNELGIPYAEATS 757

Query: 545 NVPR--LVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI 601
            +     +    +R +   L   R+  Y +   G   Y+    ++    R  G +L  N+
Sbjct: 758 FIENYFGIYPGIQRYIEETLEFGRQHGYVETLYGRRRYVPELKARNRNLREAGERLAYNM 817

Query: 602 -VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            +Q  + DI+   M          G  ++L VHDE++ E P      V  L   
Sbjct: 818 PIQGTAADIMKMAMVALEPQLDALGARMLLQVHDELLIEAPADRAEEVAALTRQ 871


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/496 (16%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/496 (16%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/518 (13%), Positives = 162/518 (31%), Gaps = 72/518 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           L   AW +        T   ++  +    + L     +   ++    ++L  +    +I 
Sbjct: 338 LIGIAWGNSD--TIYATSDVSLLQEALFKKALSKP--IKT-YDFKRSKVLLNRF---NID 389

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                  + LA+     +             +L    +       + KG+  + P     
Sbjct: 390 LPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAV----YGKGAKRAIPEKTRF 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
            +H+          + ++    ++ ++   L + E+ L  +   +  RG ++  + + ++
Sbjct: 446 LDHLAKKVKVLVDSEANIMQQLKVNEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
                +  + L ++I +L      +      L   LF   G+ +    +       +   
Sbjct: 506 AIENQKVIETLTQEIYELAGQEF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDV 564

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA    L         I KL +     L + +  DG++         ++TGR S   
Sbjct: 565 LERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSSSD 623

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +R   + S     L+ +D + 
Sbjct: 624 PNLQNIP------------------------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ 442
           IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R   K +   + Y 
Sbjct: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQ 477
               G +             +  + +       + +                        
Sbjct: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
             S +  ++      A+   + G+A +++K A     +
Sbjct: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G+++D + + +  + I  +  KL+  I ++      +      L 
Sbjct: 451 IEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWF-NINSPKQLS 509

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + +V  ++    T   +L           LIL+    +         L +A+
Sbjct: 510 YILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTTYCQGLVQAI 569

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+       G + TGR +      QN+P +                         
Sbjct: 570 NPVTGRIHTNFIQTG-TATGRLASAEPNLQNIPVKY------------------------ 604

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+ F 
Sbjct: 605 DEGKLIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFG 664

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             I +V+   R+  K +   + Y     G ++  K         + ++ +       + D
Sbjct: 665 VDISQVTPIMRSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLD 724

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512
                                 +  +S +  +++     A+   + G+A +++K A    
Sbjct: 725 NVVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRV 784

Query: 513 ---------KHQGVLQLWKDL 524
                    K + +LQ+  +L
Sbjct: 785 YKKLKENNLKSRIILQVHDEL 805



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
            + ++  +    R       V       V     +   L   + K    Y+    S    
Sbjct: 699 KISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRK---RYIKDIKSTNKN 755

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            R Y  ++  N  +Q  + DI+   M    K          I+L VHDE++ E+P     
Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 816 IVKEIVK 822


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 152/497 (30%), Gaps = 120/497 (24%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G  ID          +  +  +L   I+        + R +  L
Sbjct: 489 ELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLDELTRSIIGYAGEEF-NIRSSQQL 547

Query: 242 RMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
            + LF   GI     +      T   +L          D +L            L  L +
Sbjct: 548 AVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKLRSTYLEPLPK 607

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V  DGRL        ++ TGR S      QN+P +                        
Sbjct: 608 MVGEDGRLHTHFNQL-STATGRLSSSQPNLQNIPIR------------------------ 642

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           G+    +R+C  A+ G  L  AD + IE RVLA  + +   I AF + EDI+  T A   
Sbjct: 643 GVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHARTAALIH 702

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           +  I  V+ ++R   K +   L Y  G +    +A    +   +  +  +    F     
Sbjct: 703 DKDISAVTPDERRGAKTINFGLIYGMGVQ---KLARELQIKQTEAQEFTE--KYFAKMAT 757

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
            ++++  +            L                 G  +L  +L             
Sbjct: 758 LKAYYDTVVKDAETHGFVTTLA----------------GRRRLLPEL------------- 788

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                           H R+  +   + R+                              
Sbjct: 789 ----------------HSRNNQLSAQARRQA----------------------------- 803

Query: 598 TENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650
              ++Q  + DI+   M      K   + G  ++L VHDE++ E P+       G L  +
Sbjct: 804 VNTVIQGSAADIIKMAMVQAHKDKRLRELGAQLILQVHDELIIEAPEANIKEAGGRLLEI 863

Query: 651 MTKNPSWAK-GLPLKAE 666
           M      AK  +PLK +
Sbjct: 864 MQTV---AKLDVPLKVD 877


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 134/391 (34%), Gaps = 65/391 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D +  L  +   +   G  +D D + +L      E  +L   I+++      +      L
Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPKQL 534

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF + G+    + +         + + +L+ D  L  L      + K+     + L 
Sbjct: 535 AHILFEVLGLRT--LRKNQRGYSTDAAVLKELSNDHELPALVLRYRELAKIKSTYIDALP 592

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
              + DGR+  +      + TGR S      QN+P +                       
Sbjct: 593 RMRADDGRVHTSFN-ETVTTTGRLSSSEPNLQNIPVRT---------------------- 629

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R C +    G   + AD + IE R+LA ++ ++  + AF +G D +  T ++
Sbjct: 630 --EFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F  P++ VS E R+  K +   + Y     G ++            ++++ +       
Sbjct: 688 VFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRA 747

Query: 472 FEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAW 510
           + D   AE+                          +      A+   + G+A +++K A 
Sbjct: 748 YLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAM 807

Query: 511 RAKHQGVL------QLWKDLTEGFACVVQEG 535
               + ++      +L   + +     V EG
Sbjct: 808 TEVQRRIMERGFEAKLLLQVHDELDFSVPEG 838


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 447 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 506

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 507 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 566 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 622

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 623 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 660

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 661 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 720

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 721 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 780

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 781 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 832

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 833 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 870


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 213/694 (30%), Gaps = 160/694 (23%)

Query: 2   SKLFIDIETRSPQPLPK--VGV-WAYAEQAV---ITLCAYAWDDEPVKLWDRTEQSAMPS 55
             + ID ET S  P     VG+ + + E           +   +  +   ++  Q  +  
Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKINQINQLKI-E 443

Query: 56  DLLQYLRD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
           +++  L+D            N+ ++R++  +     I     +  ++LA      ++LK+
Sbjct: 444 EVIFALQDWFSSNENHKTLQNAKYDRLILLRH---GIILNGVVIDTLLADYI-FDATLKH 499

Query: 112 ACLALNFSEHLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           +   + + E   K +    ++ +   F    I S                   YC  DV 
Sbjct: 500 SLDEIAYREFGFKPKSFSDVVKKGEDFSYVDIKSA----------------SMYCGMDVY 543

Query: 169 ATRELF------------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            TR+L             K +  L + E+ L  +   I   G  ID   +  L   + ++
Sbjct: 544 LTRKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKK 603

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              +++++  +       S     L   LF    +D     +         + + +L  D
Sbjct: 604 LNTIEKEVYNIAGSEFNLS-SPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESD 662

Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + ++      I KL     + L + +    GR+         + TGR S      QN+
Sbjct: 663 HPIVKMIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFN-QAVTATGRLSSSNPNLQNI 721

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +                           S  +R   +     KL+ AD + IE R+L 
Sbjct: 722 PVRT------------------------EFSRRIRKAFLPQKDWKLLSADYSQIELRILT 757

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++GE+    A+   ED++  T    F    D +  ++R IGK +   + Y  GA+ F  
Sbjct: 758 HLSGEEVLKNAYLKNEDVHSLTAKLLFEK--DAIDADERRIGKTINFGVIYGMGAQRFAR 815

Query: 451 MAS----HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                       L +F +   +   F +                  A+    + T     
Sbjct: 816 STGVSLIEAKYFLSKFKERYPAVFNFLE-------------YQERLALSQGFVETLL--- 859

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                                                    R     +K  +       R
Sbjct: 860 ---------------------------------------GRRRYFHFNKNGL------GR 874

Query: 567 RLVYSDVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            L     + D +    A   +Q +R            +Q  S DI+   M          
Sbjct: 875 LLGTPPNEIDLTTARRAGMEAQQLRAAANAP------IQGSSADIIKLAMIQLHSALRET 928

Query: 621 --GYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651
                I+L VHDE+V E  P     +   + + M
Sbjct: 929 GLAAKILLQVHDELVLEVNPKDLEETKLLVKNTM 962


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 133/414 (32%), Gaps = 58/414 (14%)

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG+    P       H+          +  +    +   +L  L D E+ L  +   +
Sbjct: 432 YGKGAKKIIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G +++   +  +Q       ++L ++I +L      +      L + LF    + L 
Sbjct: 492 EIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLE 550

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
              +       +   + +LA    +         I K+ +     L + +  DG++    
Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P                                +R   +
Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645

Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN    + V+  
Sbjct: 646 PEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPN 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473
            R   K +   + Y     G +             ++ + +       +           
Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765

Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                      +     S +  ++      A+   + G+A +++K A     Q 
Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    +      Y    +L VHDEIV + P     ++  L    M   
Sbjct: 801 IQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPTDELAAIKALVKETMESA 860

Query: 655 PSWAKGLPLKAE 666
              A  +PL+A+
Sbjct: 861 IELA--VPLEAD 870


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
          Length = 877

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/521 (15%), Positives = 169/521 (32%), Gaps = 70/521 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW +E  +++  T+   + S+  Q    + V        F+R  +    LGID+P+
Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA+                    L    +       + KG+  + P      
Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAVPEKEVLL 445

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +H+       +  K  +        +   L D E  L  +   +   G ++    + ++ 
Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEIAGIKVKGQTLNEMA 505

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                   KL ++I ++      +      L + LF   G+ L    +       +   +
Sbjct: 506 VENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + +  DG++         ++TGR S    
Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRYV-QDLTQTGRLSSVDP 623

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P                                +R   + S     L+ +D + I
Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTEDAVLLSSDYSQI 659

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G +             +  + +       + D                         
Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDI 779

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            S +  +++     A+   + G+A +++K A     + +++
Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/486 (18%), Positives = 156/486 (32%), Gaps = 120/486 (24%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
           ++   G  ID   +      +A E  +L+  I +L      + R +  L   L+   G+ 
Sbjct: 490 SMERIGIGIDTAALAAFGAEVATELARLEGAIRELAGEGF-NPRSSRQLGEVLYGRMGLK 548

Query: 253 LVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
               + G    T +  L          D IL            L+ L     + GR+  T
Sbjct: 549 PRGKTPGGAASTSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPLPRLADAAGRIHTT 608

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P +                        G     +R C 
Sbjct: 609 FNNL-ATATGRLSSSNPNLQNIPIR------------------------GTLGRRMRECF 643

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A+ GKKLV AD + IE RVLA ++GE   + AF  G DI+  T A  F+     +  ++
Sbjct: 644 VAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEADIRPDE 703

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   L Y  G +    ++   G+ L                        +++  
Sbjct: 704 RRQAKTINFGLLYGMGPQ---KLSRDLGIKLDAAKA-------------------FIEKY 741

Query: 489 YPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +     +     G       + +     G  +L  ++                       
Sbjct: 742 FERLSGLSTFYQGIVDTAKAQGFVTTLAGRRRLLPEI----------------------- 778

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                 H  +  +   + R+ +                               +VQ  + 
Sbjct: 779 ------HSANSQLASQARRQAI-----------------------------NTVVQGGAA 803

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKG 660
           DI+   M  A  +      G  +VL VHDE++ ETP+    +    L +LM    + A  
Sbjct: 804 DIIKMAMLAAHNDPELAGLGAAMVLQVHDELLLETPEAAAQAAGERLSALMCGVVALA-- 861

Query: 661 LPLKAE 666
           +PL  +
Sbjct: 862 VPLAVD 867


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 133/371 (35%), Gaps = 62/371 (16%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +RL    + E  L  +   +   G ++D + + ++   + ++ ++L  +I  L      
Sbjct: 425 QERLF--YEIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEEF- 481

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L + LF   G+ ++  ++           + +L     +     +   ++KL 
Sbjct: 482 NLNSPRQLGVILFEKLGLPVIKKTKTG--YSTDAEVLEELLPFHEIIGKILNYRQLMKLK 539

Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L   ++   G+L  T    G + TGR +      QN+P +              
Sbjct: 540 STYTDGLMPLINERTGKLHTTFNQTG-TLTGRLASSEPNLQNIPIR-------------- 584

Query: 348 NRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   I S G   +V AD + IE R+LA  + E   I+A+  GE
Sbjct: 585 ----------LELGRKLRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGE 634

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T ++ F   +++V+ E RA  K +   + Y     G  +  K      G  ++ +
Sbjct: 635 DIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVYGISDFGLGRDLKIPREVAGKYIKNY 694

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
             N      + D                       +  S +  +Q      A+   L G+
Sbjct: 695 FANYPKVREYLDELVRTAREKGYVTTLFGRRRYIPELSSKNRTVQGFGERTAMNTPLQGS 754

Query: 502 ACELVKKAWRA 512
           A +++K A   
Sbjct: 755 AADIIKLAMIN 765



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 17/197 (8%)

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK----HQGVLQL 520
            ++  + F +  +    +   +D + + A   ++ G + E V    RA     + G++  
Sbjct: 613 ELRLLAHFSEEPKLIEAYQKGEDIHRKTA--SEVFGVSLEEVTPEMRAHAKSVNFGIVYG 670

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSY 579
             D   G    +    +    +        +R +  ++   + ++R   Y     G   Y
Sbjct: 671 ISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDEL---VRTAREKGYVTTLFGRRRY 727

Query: 580 LNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
           +   +S+    + +G +   N  +Q  + DI+   M N  K          ++L+VHDE+
Sbjct: 728 IPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINVEKELKARKLKSRLLLSVHDEL 787

Query: 633 VSETPDTPYFSVGTLCS 649
           V E P      V  L  
Sbjct: 788 VLEVPAEELEEVKALVK 804


>gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121]
          Length = 466

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 162/480 (33%), Gaps = 64/480 (13%)

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
           +  + KG     P D     HV +        K +++   + + +   L+D E  L  + 
Sbjct: 17  VTIYGKGKKHHVPEDEILNKHVASIIEAVSESKAEMQKQLKEYNQESLLADLELPLAEIL 76

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             + + G   D+  + ++++ I ++   L ++I +       +      L + LF    +
Sbjct: 77  SEMEEIGIFTDVKDLQQMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLEL 135

Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
            ++  ++    T   +L          D IL     S      +  L + +S D R+   
Sbjct: 136 PVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISDDHRIHTR 195

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A +TGR S      QN+P +                              +R   
Sbjct: 196 FNQTLA-QTGRLSSVDPNLQNIPIR------------------------LEEGRKIRKAF 230

Query: 369 IA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
              S+   ++ AD + IE RVLA I  ++   +AF NG DI+  T  K F+   D+V   
Sbjct: 231 KPTSSDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSL 290

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473
            R   K +   + Y     G ++            +  +  +      +           
Sbjct: 291 MRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQ 350

Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                            S +  ++      A+   + G+A +++K A        +Q  K
Sbjct: 351 GFVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAM-------VQFNK 403

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           ++        +    +    +  VP+  +    + V  ++ S+ +L    +K D SY  T
Sbjct: 404 EVQHTDYHA-KLLLQVHDELIFEVPKDEVASFSKFVEEIMESALKLDVP-LKVDSSYGAT 461


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 134/414 (32%), Gaps = 58/414 (14%)

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG+  + P       H+          +  +    +   +L  L D E+ L  +   +
Sbjct: 432 YGKGAKKAIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G +++   +  +Q       ++L ++I +L      +      L + LF    + L 
Sbjct: 492 EIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLE 550

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
              +       +   + +LA    +         I K+ +     L + +  DG++    
Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P                                +R   +
Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645

Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN    + V+  
Sbjct: 646 PEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPN 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473
            R   K +   + Y     G +             ++ + +       +           
Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765

Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                      +     S +  ++      A+   + G+A +++K A     Q 
Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819



 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    +   +  Y    +L VHDEIV + P     ++  L    M   
Sbjct: 801 IQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA 860

Query: 655 PSWAKGLPLKAE 666
                 +PL+A+
Sbjct: 861 IELV--VPLEAD 870


>gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
          Length = 877

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 104/579 (17%), Positives = 190/579 (32%), Gaps = 83/579 (14%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A  D      D T  +      L   L D  V    H +       +   G      
Sbjct: 363 LAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHALR---GRGWTLG 419

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                + LA     P   S     L+L +  H     E             D+   +  R
Sbjct: 420 GLTSDTALAAYLVRPGQRSFNLDDLSLRYL-HRELRAETDDNAQLSLLDDEDAVDAETAR 478

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A  ++A  +       D E  +     L  L+D E  L  +  T+ + G  +D + +  L
Sbjct: 479 AEMLRARAVLDLAAALDAELEQIESTAL--LTDMELPLLGVLATLEEAGIAVDCEQLEAL 536

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------G 259
           Q   A +  +  E    +    I +      L++ LF    +     ++           
Sbjct: 537 QRQFADKVAQAAEAAYGVIGKQI-NLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADALE 595

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           +L     H  +  L       RL  +      ++ L ++V+ DGR+  T     A+ TGR
Sbjct: 596 SLFEKTQHPFLEHLLAHRDATRLKVT------VDGLLKSVADDGRIHTTFNQTIAA-TGR 648

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378
            S      QN+P +  +                           +R   +   G  +L+ 
Sbjct: 649 LSSTEPNLQNIPIRTDT------------------------GRMIRDTFVVGPGYAELMT 684

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++G++  I+AF +GED++    +KAF+ PI +VS E R   K M   
Sbjct: 685 ADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYG 744

Query: 439 LGYQ---GGAKV-FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------- 481
           L Y     G     K   +     +  +         +      ++              
Sbjct: 745 LAYGLSSYGLSAQLKISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRR 804

Query: 482 --------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEG 527
                   +   ++     A+   + GTA +++K A    H+G+       ++   + + 
Sbjct: 805 YLPDLDSSNRQRREAAERMALNAPIQGTAADIIKVAMIDVHRGIREAGLRSRMLLQIHDE 864

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               V EG   +  ++A             + + + + R
Sbjct: 865 LVFEVAEGERDALEQLAREKMSAAIALSVPLDVSVGTGR 903



 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 11/152 (7%)

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580
             L+        +  +  A+   ++      R +  ++ V+  +R++ Y++   G   YL
Sbjct: 747 YGLSSYGLSAQLKISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRYL 806

Query: 581 NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIV 633
               S   + R    ++  N  +Q  + DI+   M +  +     G    ++L +HDE+V
Sbjct: 807 PDLDSSNRQRREAAERMALNAPIQGTAADIIKVAMIDVHRGIREAGLRSRMLLQIHDELV 866

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
            E  +    ++  L    M+     A  +PL 
Sbjct: 867 FEVAEGERDALEQLAREKMSAAI--ALSVPLD 896


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/542 (16%), Positives = 184/542 (33%), Gaps = 100/542 (18%)

Query: 29  VITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
              +     ++    + D      + +    + L  ++ D+TV  V H+S        K 
Sbjct: 340 EYLILG---EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY 396

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
              DI  + +   + +A    + SS  N  +    +  L K            K   D  
Sbjct: 397 ---DIDIQGFDFDTAIAAYL-IDSSKANYEVFDLINRFLEKD----------IKSDCDDL 442

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
              C+        +L     K D++   EL+ +       E  L  +  ++   G++I+ 
Sbjct: 443 KAICSSYLTKLYEKLKERLHKEDMD---ELYYK------VEHPLIYVLSSMESIGFKINK 493

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
           D + +L+    ++ +K +++I +L D    +      L   LF    + ++  ++     
Sbjct: 494 DKLEELRIKFKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTG--Y 550

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTG 318
             +   + +L     +         I K+N+     L   +  DG +         + TG
Sbjct: 551 STNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFN-QTVTTTG 609

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLV 377
           R S      QN+P +                              +R   I  +    L+
Sbjct: 610 RLSSTEPNLQNIPIKY------------------------EMGKEIRKVFIPQDSDDILI 645

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE RVLA +A +   I AF +  DI+  T ++ F  P+D+V+   R+  K +  
Sbjct: 646 SCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNF 705

Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------ 475
            + Y       A+  K         +  + +       + ++                  
Sbjct: 706 GIVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRR 765

Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQG---VLQLWK 522
               + +S +  ++      A+   + G+A +++K A        R K+     +LQ+  
Sbjct: 766 RFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHD 825

Query: 523 DL 524
           +L
Sbjct: 826 EL 827


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 134/400 (33%), Gaps = 59/400 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E  L  +   +   G  +D++++    +   ++  + +    +L      +     
Sbjct: 461 YTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDSLNLNSPK 520

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTL 295
            L+  LF    +     ++    +         +           +     K    L  L
Sbjct: 521 QLQAVLFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHREYQKMKTTLEGL 580

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + V  DGR+  T      + TGR S      QN+P +  +                   
Sbjct: 581 IKTVQPDGRIHTTFN-QTVASTGRLSSTEPNLQNIPVRTEA------------------- 620

Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +RS  I   G + L+ AD + IE RV+A ++ +   I+A+  GED++    +
Sbjct: 621 -----GRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHNYVGS 675

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           K F+ P+D+V+ E R   K M   L Y     G ++     A      ++ + +      
Sbjct: 676 KVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMENYFERFGGVK 735

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + D    ++                      +   ++     A+   + GTA +++K A
Sbjct: 736 RYLDNVVEKARKDGYTATVFGRRRYLPELNSDNRLARENAERAALNAPIQGTAADIIKVA 795

Query: 510 WRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545
                  +     ++   + +     V  G +   +++  
Sbjct: 796 MIRVDNALRDLKSRVLLQVHDELVVEVAPGEADEVKKILE 835



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 79/485 (16%), Positives = 155/485 (31%), Gaps = 60/485 (12%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           I  RG   D  +   L     +  +  D     L   + ++S Q   L     +     +
Sbjct: 382 IELRGIAHDTAIAAYLLRPGQRTYELSDVYQRHLKKTLGQASDQLSLLDDTSLVDQAAAI 441

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILN------RLASSGSAI------LKLNTLSEAVSS 301
           ++++   L   L   +  +L  DL L       R+ ++G A+       +L+   E V+ 
Sbjct: 442 MELAAE-LTKQLQAIDSFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAE 500

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             R         A+R    +G      N P+Q   + +L +T +     +T       A 
Sbjct: 501 QER---------AAR--ELAGDDSLNLNSPKQL--QAVLFETFEMPKTKKTKTGYSTAAK 547

Query: 362 DCVRSCIIASN---GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT----TYA 414
           +  +  +   +      L   +   ++  +       +  IK       I+ T      +
Sbjct: 548 EIEQLAVNHPHPFLDHLLAHREYQKMKTTL-------EGLIKTVQPDGRIHTTFNQTVAS 600

Query: 415 --KAFNTPIDKVSKEQRAIG-KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             +  +T  +  +   R    + +  A     G +   T A +  ++++  +   +    
Sbjct: 601 TGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFETLMT-ADYSQIEMRVMAHLSEDPGL 659

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            E +   E  H +         V  K+     + V    R + + +          F   
Sbjct: 660 IEAYRAGEDLHNY---------VGSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLS 710

Query: 532 VQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMR 589
            Q G     A+ +           KR +  V+  +R+  Y + V G   YL    S    
Sbjct: 711 QQLGIPAREAKEIMENYFERFGGVKRYLDNVVEKARKDGYTATVFGRRRYLPELNSDNRL 770

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
            R    +   N  +Q  + DI+   M             ++L VHDE+V E        V
Sbjct: 771 ARENAERAALNAPIQGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEADEV 830

Query: 645 GTLCS 649
             +  
Sbjct: 831 KKILE 835


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 133/384 (34%), Gaps = 63/384 (16%)

Query: 164 KRDVEATRELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            +DVEA   + + L+          D E  L  +   +   G  +D  ++ ++ + + ++
Sbjct: 448 AQDVEALMPVLEGLMAERGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTKQ 507

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQL 273
              L++   +       +      L + LF   G+ ++  ++    T  S+L        
Sbjct: 508 VADLEQKAKEEAGEDF-NVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEHP 566

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + I+     S      L  L   ++   GR+        A+ TGR S      QN+P 
Sbjct: 567 IIETIMEYRTLSKLLSTYLVALHPLINPNTGRIHTHFN-QMATVTGRLSSTDPNLQNIPT 625

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAW 391
           +                              +R   +   G   L+  D + +E RV+A 
Sbjct: 626 RT------------------------EVGKQMRRMFVPGKGYDLLMSCDYSQVELRVMAS 661

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           IAG++  I AF +G+DI+  T ++ F  PI+ V+   R+  K +   + Y     G  + 
Sbjct: 662 IAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIYGISDFGLGRQ 721

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQ 486
                S     +  +         + + E+ ++  +                       +
Sbjct: 722 LGVPRSEAAQYIDSYFARYTGVKEYMEGEKKKAREMGYVETLFGRRRYLPDIHAKNFNRR 781

Query: 487 DQYPEFAVKDKLIGTACELVKKAW 510
                 A+   + GTA +++K A 
Sbjct: 782 SFAERTAINTPIQGTAADIIKIAM 805


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae
           TIGR4]
 gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
          Length = 877

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 67/403 (16%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  RG  +D   + +    + ++  +    I + T G   +      L  
Sbjct: 513 EMQLLPVLAAMERRGLYVDPQKLAEQSAQLGEDIAQRVASIHQ-TAGEDFNLDSPSQLSH 571

Query: 244 YLFLITGIDLVDMSEG-TLKSILSHSNITQLAKDL-----ILNRLASSGSAILKLNTLSE 297
            LF +  +    + +  T     +   + +LA++      +L     +      L+ L  
Sbjct: 572 ILFDVLKLPTYGLKKTRTGFYSTNAKVLGELAQEYQIVADVLEYRERAKIKSTYLDALPS 631

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +  D R+  TL     + TGR S      QN+P +                        
Sbjct: 632 LIRGDKRIHTTLN-QTVTATGRLSSSDPNLQNIPTRS----------------------- 667

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 VR+      G   +  D + IE R+LA ++ ++  + AF +G D +  T A+ F
Sbjct: 668 -ELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFNSGADFHAATAARVF 726

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P+++V+   R+  K +   + Y     G A   K         + ++         + 
Sbjct: 727 GVPVEEVTPALRSRAKAVNFGIVYGQQAFGLATSLKISRKEAQEMIDRYFDAYPGVRAYL 786

Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           D     +H                     +  +       A+   + G+A +++K A   
Sbjct: 787 DDSVRTAHECGYAITMYGRKRHIREFNQSNRQLIAFGERTAMNHPMQGSAADIIKIAMIN 846

Query: 513 ----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                       + +LQ+  +L         E  S   +    
Sbjct: 847 VEKRLRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETME 889


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/496 (16%), Positives = 166/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            KL      +      L + LF    + ++  ++    T   +L            IL+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494
              ++++ ++      +                         +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMSDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 16/174 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
                  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMSDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
           + + M        + G    ++L VHDE++ E P      +  L   +M     
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHAIE 872


>gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
 gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 136/405 (33%), Gaps = 68/405 (16%)

Query: 157 QLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           + F E+  R V    E    L ++L        L D E+ L  +   +   G ++  + +
Sbjct: 87  EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETL 146

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       ++L ++I +L      +      L + LF   G+ L    +       +
Sbjct: 147 LEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 205

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + +  DG++         ++TGR S
Sbjct: 206 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQTGRLS 264

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 265 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 300

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 301 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 360

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------D 474
            Y     G A             +  + +       +                      +
Sbjct: 361 VYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRRE 420

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                S +  ++      A+   + G+A +++K A     + +++
Sbjct: 421 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 465



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DIL   M    K     GY    +L VHDEIV E P +   +V  L    M + 
Sbjct: 444 IQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEA 503

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 504 IQ--LSVPLIAD 513


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 139/411 (33%), Gaps = 73/411 (17%)

Query: 174 FKRLIPLSDGERDLWLLD-------------QTINDRGYRIDLDLVLKLQELIAQERKKL 220
            + + PLSD   +L ++D               +  RG  +D   + +  + +    ++L
Sbjct: 460 REAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKEYGDQLVGRIEEL 519

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            E I K       +      L + LF    ++    ++    + +    + ++     + 
Sbjct: 520 QESIYKEAGEEF-NINSPKQLGVVLFEHMKLEGAKKTKTGYSTSVE--VLEKIEHLYPII 576

Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +      + KL     + L+  +  D R+ G       + TGR S      QN+P +  
Sbjct: 577 SMVLEYRQLTKLKSTYADGLANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIPIR-- 633

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +  +G   + AD + IE RVLA ++ +
Sbjct: 634 ----------------------MELGRAIRKVFLPEDGYVFLDADYSQIELRVLAHLSQD 671

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
           +  I A+   +DI+  T ++ F  P+D+V+  QR   K +   + Y     G ++  K  
Sbjct: 672 EKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKIS 731

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                  + ++         F D                       + +S +   ++   
Sbjct: 732 RKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGE 791

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
             A+   + GTA +++K A    +  + +  K +       + +   I   
Sbjct: 792 RVAMNSPIQGTAADIIKIAMVRVNMKLKE--KQMKSRLLLQIHDELLIETH 840



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R +G ++  N  +Q  + DI+   M               ++L +HDE++ ET    + 
Sbjct: 786 QRNFGERVAMNSPIQGTAADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFE 845

Query: 643 SVGTL--CSLM 651
            V  +    +M
Sbjct: 846 EVKEILQNEMM 856


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 174/567 (30%), Gaps = 83/567 (14%)

Query: 45  WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            D T+ +      L   L D      AH+     +   + LG  +        + LA   
Sbjct: 434 IDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALAE-LGFTL--AGVTSDTALAAYL 490

Query: 104 GLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
            LP   S     L L +     K +E  +         ++           V   +  GE
Sbjct: 491 ALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLDVEVEGVEESAEAEVDVVRARAVGE 550

Query: 162 YC-KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                D +  R    RL  L D E  L  +   +   G   D + +  LQ     E  K+
Sbjct: 551 LADALDGDLERRSAARL--LRDIELPLLTVLAGMERAGIAADAEYLADLQSQYGTEVTKV 608

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270
            E   ++      +      L+  LF   G+      +            L +   H  I
Sbjct: 609 VEAAHEIVGRPF-NLGSPKQLQQILFEELGLPKTKKIKTGYTTDADALAWLATNSEHPLI 667

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L +   + RL +       + +L   +   GR+  T     A+ TGR S      QN+
Sbjct: 668 PTLLRHRDVARLKTV------VESLLPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNI 720

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVL 389
           P +                              +R   +   G   L+ AD + IE R++
Sbjct: 721 PIRT------------------------AEGRQIRRAFVVGPGYETLLTADYSQIEMRIM 756

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++G+   I+AFA+GED++    A+AFN P+ +V  E R   K M   L Y     G A
Sbjct: 757 AHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAYGLSAYGLA 816

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484
                        ++ +         F      ++                      +  
Sbjct: 817 TQLGIHPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETILGRRRYLPDLTSDNSQ 876

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSI 538
            +      A+   + G+A +++K A     +G        +L   + +     +  G   
Sbjct: 877 RRQMAERMALNAPIQGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEIAPGERE 936

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSS 565
            A  +              + + + S 
Sbjct: 937 RAEALVRAEMANAYTMSVPLEVSVGSG 963



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594
               AR             +  +  V+  +R+  Y++ + G   YL   TS   + R   
Sbjct: 822 HPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETILGRRRYLPDLTSDNSQRRQMA 881

Query: 595 GKLTENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
            ++  N  +Q  + DI+   M    +     G    ++L VHDE+V E           L
Sbjct: 882 ERMALNAPIQGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEIAPGERERAEAL 941

Query: 648 CS 649
             
Sbjct: 942 VR 943


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            L  RF   SI +   D    + V+A     E       A RE    L      E  L  
Sbjct: 429 YLTERFSVPSIANGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 484

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               +   G  ID + + +      +E  ++ E+I +L      +      L + LF   
Sbjct: 485 TLVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELAGETF-NINSPKQLGVILFEKL 543

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303
            + ++  ++           +  L  +  +     +  ++ KL       L+  +     
Sbjct: 544 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTH 601

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T      + TGR S      QN+P +                              
Sbjct: 602 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 636

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R+      G   LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D
Sbjct: 637 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQD 696

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           +V+ E+R+  K +   + Y     G ++            +  +         + D    
Sbjct: 697 EVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 756

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           E+H                     +   +      A+   + GTA +++K A     Q 
Sbjct: 757 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 815



 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+   M    +          ++L VHDE+V E  ++   ++  L
Sbjct: 797 IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 848


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            L  RF   SI +   D    + V+A     E       A RE    L      E  L  
Sbjct: 429 YLTERFSVPSIANGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 484

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               +   G  ID + + +      +E  ++ E+I +L      +      L + LF   
Sbjct: 485 TLVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELAGETF-NINSPKQLGVILFEKM 543

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303
            + ++  ++           +  L  +  +     +  ++ KL       L+  +     
Sbjct: 544 KLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTH 601

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T      + TGR S      QN+P +                              
Sbjct: 602 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 636

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R+      G   LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D
Sbjct: 637 IRALFYPGTGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQD 696

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           +V+ E+R+  K +   + Y     G ++            +  +         + D    
Sbjct: 697 EVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 756

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           E+H                     +   +      A+   + GTA +++K A     Q 
Sbjct: 757 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 815



 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+   M    +          ++L VHDE+V E  ++   ++  L
Sbjct: 797 IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 848


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
          Length = 880

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/520 (14%), Positives = 160/520 (30%), Gaps = 76/520 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           L   AW +        T   ++  +    + L     +   ++    ++L  +    +I 
Sbjct: 338 LIGIAWGNSD--TIYATSDVSLLQEALFKKALSKP--IKT-YDFKRSKVLLNRF---NID 389

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                  + LA+     +             +L    +       + KG+  + P     
Sbjct: 390 LPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAV----YGKGAKRAIPEKTRF 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             H+            +    ++L   ++   L + E+ L  +   +  RG ++  + + 
Sbjct: 446 LEHLAK--KVKVLVDSEANVMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLN 503

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++     +  + L ++I +L      +      L   LF   G+ +    +       + 
Sbjct: 504 EMAIENQKVIETLTQEIYELAGQEF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAV 562

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA    L         I KL +     L + +  DG++         ++TGR S 
Sbjct: 563 DVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSS 621

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P                                +R   + S     L+ +D 
Sbjct: 622 SDPNLQNIP------------------------VRLEQGRLIRKAFVPSEDNAVLLSSDY 657

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440
           + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R   K +   + 
Sbjct: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIV 717

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G +             +  + +       + +                      
Sbjct: 718 YGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSL 777

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
               S +  ++      A+   + G+A +++K A     +
Sbjct: 778 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/498 (18%), Positives = 164/498 (32%), Gaps = 122/498 (24%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +  ++   G  +DLD      + ++ +  +L   I++       + R +  L
Sbjct: 488 DLEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHAGEPF-NIRSSQQL 546

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNIT------QLAKDLILNRLASSGSAILKLNTL 295
              LF    I   + +  T +   ++  +        + +D++  R+     +   L  L
Sbjct: 547 AAILFDKLDIKEGNKT-ATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRST-YLEPL 604

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + V  D RL        A+ TGR S      QN+P +                      
Sbjct: 605 PKLVGEDSRLHTHFNQL-ATATGRLSSSQPNLQNIPIR---------------------- 641

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
             G     +R+C IA  G  L  AD + IE RVLA  +G+   I AF N EDI+  T A 
Sbjct: 642 --GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAAL 699

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             +     V  ++R   K +   L Y  G +    +A    + + Q  + ++    F+  
Sbjct: 700 LTDKQPQDVLADERRNAKTINFGLIYGMGPQ---KLARELDITVNQAKEFIE--RYFDKL 754

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
              ++++  +            L                 G  +L  +L           
Sbjct: 755 ATLKAYYDTIVKDAESHGFVTTLA----------------GRRRLLPEL----------- 787

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                             H R+  +V  + R+                            
Sbjct: 788 ------------------HSRNTQLVSQARRQA--------------------------- 802

Query: 596 KLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLC 648
                ++Q  + DI+   M      K+    G  ++L VHDE++ E P+         L 
Sbjct: 803 --VNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRPAGERLK 860

Query: 649 SLMTKNPSWAKGLPLKAE 666
           ++M      A  +PLK +
Sbjct: 861 TIMQSVADLA--VPLKVD 876


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/538 (15%), Positives = 168/538 (31%), Gaps = 78/538 (14%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           V+L D + +      L Q+L  +      H +     +     G  I        + LA 
Sbjct: 358 VELGDLSAED--DKALAQWLASDAP-KYFHEAKAAFHMLA---GRGIELAGIAHDTALAA 411

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
               P   +   LA  +  HL K   G A                               
Sbjct: 412 YLLRPGQ-RTYALADVYQRHLQK-TLGAATEQLSLLDDSSLVDQAAA-----------IL 458

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                + A  +        +D E  L  +   +   G  +D+D++   ++   ++  + +
Sbjct: 459 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 518

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +L      +      L+  LF    +     ++    +                  
Sbjct: 519 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 578

Query: 282 LASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              +     K    L  L + V  DGR+  T     AS TGR S      QN+P +  + 
Sbjct: 579 HLLAHREYQKMKTTLEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA- 636

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396
                                     +RS  I  +G  +L+ AD + IE RV+A ++ + 
Sbjct: 637 -----------------------GRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADP 673

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+A+  GED++    ++ F+ P+D+V+ E R   K M   L Y     G ++     A
Sbjct: 674 GLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPA 733

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 ++ + +       + D    ++                      +   ++    
Sbjct: 734 GEAKSIMESYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAER 793

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545
            A+   + GTA +++K A     + +     ++   + +     V  G +   R +  
Sbjct: 794 AALNAPIQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 851



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 602 VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    +   G    ++L VHDE+V E        V  +  
Sbjct: 800 IQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 851


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/529 (17%), Positives = 167/529 (31%), Gaps = 94/529 (17%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              AY    +   ++   E       LL YL  E    + ++            G  +  
Sbjct: 367 LALAY----QDQAVYIPIEDVRQDEALLAYLAGEK-TKIVYDVK---ACLHLADGAGLTI 418

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                 +++A            C +   S+   + + G          ++D       + 
Sbjct: 419 NGMKIDAMIAAFL---------CDSTLTSDQKIREKFGLTET-----VTMDEVYGKPGKM 464

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYR 200
              +  QL  + C + ++    L+K   P            D E  L  +   +   G R
Sbjct: 465 KLPEP-QLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAAVLYKMEKEGIR 523

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
           ID   +  +          L + I         +      L   LF   G+        T
Sbjct: 524 IDSQTLDDIARQTQARLDALTDAIYAAAGETF-NINSPKQLGEVLFDKLGLPASGKKRST 582

Query: 261 LKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
              +L      H  I  L +     +L S+ +       L + +  DGR+        A+
Sbjct: 583 SADVLEKLLGVHPIIADLLEFRKYQKLYSTYA-----EGLKKYIHPDGRIHTIYNQC-AT 636

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
           +TGR S      QN+                              S  VR   + S G  
Sbjct: 637 QTGRLSSTEPNLQNIS------------------------VRDEESREVRKAFLPSEGNV 672

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LV +D + IE R+LA +A E   + AF +  DI+  T +  F  P+D+V  + R   K +
Sbjct: 673 LVASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAV 732

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------EQAESHHLW 484
              + Y     G ++      +     ++++ Q+  + S + D            +  L 
Sbjct: 733 NFGIVYGISDFGLSQQLDISRAQAKEFIERYLQSYPNISKYMDQVISFCQEHGYTATMLG 792

Query: 485 MQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQGVLQ 519
            + + PE               A+   + G+A +L+K A     + + +
Sbjct: 793 RRREVPEIHDKNYMTREFGKRAAMNAPIQGSAADLIKLAMIRIDKAISE 841


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 99/597 (16%), Positives = 190/597 (31%), Gaps = 110/597 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60
           ID ET         G+  + +   I   ++A         D + ++ +  D     +   
Sbjct: 354 IDFET--------TGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDT 403

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L  E +  + HN  +E  + K  +G  I +  +  T V A     P+  +     L    
Sbjct: 404 LEKEDIKVIGHNLKYEYKMMK-AIGKSIGNM-YFDTMV-AAYLINPTRGRYNMDDL---- 456

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLI 178
                      IA     +I            +    L    EY   D + T   ++   
Sbjct: 457 ----------AIAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFA 506

Query: 179 PLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           PL           + E  L  +   +   G  I  + +  L +  +   +K  E I    
Sbjct: 507 PLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEA 566

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                + +    L   LF   GI     ++    T + +L+  +      + +L     +
Sbjct: 567 GEEF-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYA 625

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 L+     ++   GR+  +      + TGR S      QN+P             
Sbjct: 626 KLKNTYLDVFPTLINEKTGRIHASFN-QTVTATGRLSSSEPNLQNIP------------- 671

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                        G     +R+  I   G  L+ AD + IE R+LA  + +   ++AF N
Sbjct: 672 -----------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKN 720

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            +DI+  T  K ++   + V+   R I K++  ++ Y     G +K            ++
Sbjct: 721 NDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKKKEAEDFIK 780

Query: 461 QFSQNVKSTSTFEDWEQAE----------------------SHHLWMQDQYPEFAVKDKL 498
            +S        F D    E                      S +   +++    A+   +
Sbjct: 781 GYSSTYSRVKPFCDEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLI 840

Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
            G+A +++K A  A H+           V+Q+  +L    +    +      + +  
Sbjct: 841 QGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIME 897



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650
              ++Q  + D++   M    K          IV+ VHDE+V E  +       T+   +
Sbjct: 836 LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEI 895

Query: 651 M 651
           M
Sbjct: 896 M 896


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGREF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            L  RF   SI +   D    + V+A     E       A RE    L      E  L  
Sbjct: 425 YLTERFSVPSIANGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 480

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               +   G  ID + + +      +E  ++ E+I +L      +      L + LF   
Sbjct: 481 TLVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELAGETF-NINSPKQLGVILFEKL 539

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303
            + ++  ++           +  L  +  +     +  ++ KL       L+  +     
Sbjct: 540 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTH 597

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T      + TGR S      QN+P +                              
Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R+      G   LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D
Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQD 692

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           +V+ E+R+  K +   + Y     G ++            +  +         + D    
Sbjct: 693 EVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           E+H                     +   +      A+   + GTA +++K A     Q 
Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 811



 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+   M    +          ++L VHDE+V E  ++   ++  L
Sbjct: 793 IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 844


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
          Length = 877

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 165/492 (33%), Gaps = 74/492 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L DE +     ++    +  K     D+  K      ++A     P+       
Sbjct: 363 EAFTKWLADEDMRKYTFDAKRAIVALK---WKDVEIKGIDFDLLIAAYLLDPADTDKDFR 419

Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           A      + KM+E  A+      + KG+  + P     A HV   ++   +  +      
Sbjct: 420 A------VAKMKETHAVKSDEEVYGKGAKRAVPEQGVVAEHVAR-KVHVLFDVQKTFVEE 472

Query: 172 ELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                   L ++ E  L  +   +  +G ++D + +  + + +A   K++++ I +L   
Sbjct: 473 LEKNEQYELFTELEMPLARVLAEMEVKGVKVDTERLRNMGDELAGRLKEMEQKIYELAGT 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASS 285
              +      L + LF    + ++  ++       S   + +L         IL+     
Sbjct: 533 EF-NINSPKQLGVVLFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNILHYRQLG 589

Query: 286 GSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 +  L + V  D  ++         ++TGR S      QN+P +           
Sbjct: 590 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 637

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   I S  G  +  AD + IE RVLA IA +   ++AF 
Sbjct: 638 -------------LEEGRKIRQAFIPSTEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 684

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +  DI+  T    F    D+V+   R   K +   + Y     G ++         G  +
Sbjct: 685 HDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 744

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                       +  S +  ++      A+   +
Sbjct: 745 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 804

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 805 QGSAADIIKKAM 816



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        + G    ++L VHDE++ E P      +  L   +M   
Sbjct: 804 IQGSAADIIKKAMIIMANRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 863

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 864 IELA--VPLKVD 873


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 90/517 (17%), Positives = 175/517 (33%), Gaps = 72/517 (13%)

Query: 28  AVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSLFERILFKK 82
             ++L   A   D+ V   D         D+++ L+D    +      +N   +    K 
Sbjct: 324 PSLSLMGVALACDDSVYYVDV---ENATDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKN 380

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI + +        +A    L   L N    +++   L  +    +      +    S
Sbjct: 381 A-GIHVNN--------IALDLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQLS 431

Query: 143 PPYDCTRANHVQAWQLFGEYC---KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            P   +  N  Q +  F  +    K  +    +         + E  L  +  TI   G 
Sbjct: 432 LPIQKSPPNPAQYFGEFVSHLPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGM 491

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
            +D++ +  L++++++E   L +DI  L      + +    L   L+   G+  VD +  
Sbjct: 492 PLDVEDLQNLEKILSEELAILADDIYALAGSPF-NIKSPKQLAEVLYNKLGLTPVDKARS 550

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L          + IL   +        +  L + V     R+  T    G + TG
Sbjct: 551 TKAEVLEAMTGEHDVIEKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG-TVTG 609

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLV 377
           R +      QN+P +                              +R            +
Sbjct: 610 RLACQDPNLQNIPIRSER------------------------GRLLRKAFCDTHQNTYFL 645

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R LA ++ ++    AF + ED++  T ++ F+ P++KV+K+QR   K +  
Sbjct: 646 SADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVNF 705

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------- 480
            + Y     G +K+ K   S     +  +       + F +   +++             
Sbjct: 706 GIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPDVARFINETVSQACENLRVKTLLGRE 765

Query: 481 -------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                       +      AV  ++ G+A EL+K A 
Sbjct: 766 RIIDNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
          Length = 877

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 92/549 (16%), Positives = 182/549 (33%), Gaps = 88/549 (16%)

Query: 28  AVITLCA--YAWDDEPVKLWD------RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
               L    Y  D+EPV           T    +     +    + V  ++ +       
Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVDIVKSFKEEFESKDVNKLSFDIK---PC 375

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIAR 134
               +   I         V+      PS       ++    + +     +   GK    +
Sbjct: 376 IYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKSLEDITGKGRSKK 435

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQT 193
               S +         N++  + +F       + E   E    L    D E  L  +   
Sbjct: 436 TILESDEKEI-----DNYIVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCD 488

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  +  + ++++ EL   E K +++ + +L    I +   +  L   LF    + +
Sbjct: 489 MEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPV 547

Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +  ++    T + +L   +      D IL     +      ++ + + +  DG++  T Q
Sbjct: 548 IKKNKTGPSTDQEVLEALSGRHEIIDYILRYRTIAKLKTTYIDGMVDLIKEDGKIHTTFQ 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A +TGR S      QN+P +                              +R   + 
Sbjct: 608 QTIA-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVP 642

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           S G  L+ AD + IE RVLA +A ++  I AF NG DI+  T ++ F    DKV+  QR+
Sbjct: 643 SQGSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRS 702

Query: 431 IGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------------ 474
             K +   + Y  G    +K            ++ +    K    + +            
Sbjct: 703 NAKAVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYV 762

Query: 475 ---------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQ 515
                      + +S +  ++      A+   + G+A +++K A             K +
Sbjct: 763 ETIMKRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEENLKAK 822

Query: 516 GVLQLWKDL 524
            +LQ+  +L
Sbjct: 823 LILQVHDEL 831



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++          +  + + +  +  V I             +    Y+    S+    
Sbjct: 726 ITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYVETIMKRR---RYIPELKSKNYNV 782

Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M       N       ++L VHDE++ + P+     
Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEENLKAKLILQVHDELIVDCPEDEREK 842

Query: 644 VGTLCS-LMTKNPS 656
           V  +   +MT    
Sbjct: 843 VLEIMKDVMTHAVD 856


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
          Length = 877

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/496 (16%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  I            ++ E  L  +   +  +G ++D D +  + E +A   K+++++I
Sbjct: 474 QTFIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSCKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF N  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 113/625 (18%), Positives = 205/625 (32%), Gaps = 126/625 (20%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           ++ A+   L   L  +    V  N+ F+R++F    GI++  K  +  ++LA     P  
Sbjct: 428 KKEAVLQALKPILESDRYPKVFQNTKFDRLIF-YHQGINL--KGVVFDTLLASYVLHPE- 483

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                ++ N S+   +   G    +                   V        YC  D  
Sbjct: 484 -----MSHNLSDLCYRYLSGITSQSYKELAIPKGKTIASLDIETV------ANYCGLDAY 532

Query: 169 ATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           AT  L  +L       P     L + E+ L  +   + D G RID D + +L + + Q+ 
Sbjct: 533 ATFLLVSKLKQELKSFPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDL 592

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             +++   +   G I +      L   LF    ++     +        H+ + +L  D 
Sbjct: 593 HIIEQQAYQ-EAGEIFNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLQGDH 651

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +         + KL     + L   V  D  R+         + TGR S      QN+P
Sbjct: 652 PIIDHILDYRTLSKLKSTYVDALPALVRPDTQRVHTNFN-QTVTATGRLSSSNPNLQNIP 710

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                           S  +R   I      LV AD + IE R+LA 
Sbjct: 711 IRT------------------------EFSRKIRQAFIPQENWLLVSADYSQIELRILAH 746

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ E   ++A+ N +D++  T    F+   + ++ ++R +GK +   + Y  GA+ F   
Sbjct: 747 LSQEVVLLEAYRNNQDVHSVTAKLLFDK--ETITPQERNLGKTINFGVIYGMGAQRFARE 804

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           A                                               G +    K    
Sbjct: 805 A-----------------------------------------------GVSAAEGKTFIN 817

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              Q   +++  L       + +G   +         L  RR+   +   L   +     
Sbjct: 818 KYRQRYAKVFDYLERMKKEAIADGFVTTI--------LGRRRYFNFITESLQKLKGSDPE 869

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLT 627
            +  +   +N A +QL+R            +Q  S DI+   M    +  + Y   ++L 
Sbjct: 870 KINLEVLNINYADAQLLRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQ 923

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLM 651
           VHDE+V E P   +  +   +   M
Sbjct: 924 VHDELVFEIPLNEWEELQTKIKETM 948


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 133/414 (32%), Gaps = 58/414 (14%)

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG   + P       H+          +  +    +   +L  L D E+ L  +   +
Sbjct: 432 YGKGVKRAIPERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G +++   +  +Q       ++L ++I +L      +      L + LF    + L 
Sbjct: 492 EIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLE 550

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
              +       +   + +LA    +         I K+ +     L + +  DG++    
Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P                                +R   +
Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645

Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN    + V+  
Sbjct: 646 PEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPN 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473
            R   K +   + Y     G +             ++ + +       +           
Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765

Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                      +     S +  ++      A+   + G+A +++K A     Q 
Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    +      Y    +L VHDEIV + P     ++  L    M   
Sbjct: 801 IQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA 860

Query: 655 PSWAKGLPLKAE 666
              A  +PL+A+
Sbjct: 861 IELA--VPLEAD 870


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDVQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 575

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 152 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 211

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 212 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 270

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 271 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 327

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 328 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 365

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 366 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 425

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 426 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 485

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 486 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 537

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 538 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 575


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + D                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
          Length = 878

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/522 (16%), Positives = 169/522 (32%), Gaps = 72/522 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLRDETVMCVAHNSLFER-ILFKKTLGIDIP 89
           +   AW D    ++  T+ S +  DL  + L     +       F+R  +    LGID+P
Sbjct: 336 MIGLAWGD-DQAIYATTDTSLLTHDLFKEALSKP--IKT---YDFKRGKVLLSHLGIDLP 389

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           +  +   S LA+         N          L    +       + KG+  + P     
Sbjct: 390 TASF--DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDV----YGKGAKRAIPEKNVL 443

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
            +H+          +  +        +L  L + E  L  +   +   G  +  + +  +
Sbjct: 444 LSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETLQDM 503

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           +     E + L ++I  L      +      L + LF   G+ L    +       +   
Sbjct: 504 ERANEIELQALTQEIYDLAGEAF-NINSPKQLGVILFEKLGLPLSATKKTKTGYSTAVDV 562

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA    +         I KL +     L +++S DG++         ++TGR S   
Sbjct: 563 LERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRY-LQDLTQTGRLSSVD 621

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +R   +    +  L+ +D + 
Sbjct: 622 PNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSDYSQ 657

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ 442
           IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y 
Sbjct: 658 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYG 717

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQ 477
               G A             ++ + +       + D                        
Sbjct: 718 ISDFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPD 777

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             S +  ++      A+   + G+A +++K A     Q + +
Sbjct: 778 INSRNFNIRSFAERTAINSPIQGSAADILKVAMIHLDQALKK 819


>gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus Y714s Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELXGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V  D +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   +       G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVSGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVSGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDIK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D D +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
          Length = 877

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334]
 gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334]
          Length = 889

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%)

Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           + F E+  R     VE    L ++L        L D E+ L  +   +   G  +  + +
Sbjct: 452 EKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETL 511

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       +KL ++I +L      +      L + LF   G+ L    +       +
Sbjct: 512 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 570

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + + +DG++         ++TGR S
Sbjct: 571 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 629

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 630 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 665

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 666 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGV 725

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +             +  + +       + D                     
Sbjct: 726 VYGISDFGLSNNLGISRKEAKSYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 785

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                S +  ++      A+   + G+A +++K A     + ++              + 
Sbjct: 786 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 837

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    V  VP+  +   K+ V   +  + +L    +  +        ++
Sbjct: 838 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 889


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 81/496 (16%), Positives = 165/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGAMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            KL      +      L + LF    + ++  ++    T   +L            IL+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF    DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 DAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLKRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/538 (15%), Positives = 184/538 (34%), Gaps = 80/538 (14%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            +      + + D P +L      + + + L   L D ++  +  N  ++  +       
Sbjct: 360 DSFYVPVNHDYIDAPKQL----NFNDVLNQLKPILEDVSISKIGQNLKYDAHILSNY--- 412

Query: 87  DIPSKRWICTSVLART--NGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGS 139
            I  +      ++     N + +      L+  +  +     +  + +GK  +  F + +
Sbjct: 413 KIDLQGISDDVIVKSYCLNSVATRHNMNDLSEYYLNYQTINFVDILGKGKKQVT-FNQVN 471

Query: 140 ID-SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDR 197
           ++ +  Y C                   ++     + RL+ L    E  L  +   +   
Sbjct: 472 VEIALLYVCENVIITSLLNHM-------LDEEIAQYPRLVKLYQNLELPLIKVLLCMERN 524

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D++++   Q  I Q+ + +   + +L D +         ++  LF   G+ L+ + 
Sbjct: 525 GVELDVNILSTQQLDITQQMEDIKNQVFELADNVFNLE-SPKQIQRILFESKGLGLIPLR 583

Query: 258 EGTLKSILSHSNITQLAK----DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFY 312
           +       ++    +L      DLIL+    +      L  L   +  +  RL  +    
Sbjct: 584 KTPKGVPSTNEEALKLLDHPVVDLILSYRTLAKLNSTYLEVLPRKIDLNTHRLHTSYN-Q 642

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P                               C+R   I   
Sbjct: 643 VVTATGRLSSSNPNLQNIP------------------------IFSEQGSCIRGAFITGK 678

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  ++ AD + IE R++  ++ +   ++AF N +D++  T +  FN PID+V+ E R   
Sbjct: 679 GNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTMFNIPIDEVTSEYRRRA 738

Query: 433 KVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------- 474
           K +   L Y       AK      +     +  +  N  S   + D              
Sbjct: 739 KAINFGLIYGMSAYGLAKQIGVSRTKAKQYMDTYFDNYPSVLYYMDNIKEIAKVQGYVET 798

Query: 475 -------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                    Q  + +  +Q      A+   + G++ +++KK+    +  + Q   D+ 
Sbjct: 799 IMGRRLYLPQINAKNKMLQQHALRTAINAPMQGSSADIIKKSMFDVYTWIGQDNPDIR 856


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 903

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/482 (15%), Positives = 163/482 (33%), Gaps = 66/482 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNF 118
           + D       +++    +   +   + +P +  +   +LA     PS      A +A  +
Sbjct: 388 ISDPNQTKAVYDAKKTMVTLNR---LGLPCEGILFDFMLASYVLDPSQTIDDFASVASRY 444

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                + +E       F KG+  + P +   A+H+    +     ++ V  + E  ++L 
Sbjct: 445 DYTQVEADE-----LVFGKGAKYNVPDETKVADHLARKAVAIAKLEQTVNESLEKNEQLE 499

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            + + E  L  +   +   G R+D + + +++  +A   + ++  I +L      +    
Sbjct: 500 LVDNLELPLTFVLAKMEMEGVRVDTERLEEMKSEMAVRLQTIESSIHELAGTTF-NINSP 558

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L + LF   G+  V  ++    T   +L   +      D IL            +  L
Sbjct: 559 KQLGVILFETLGLPPVKKTKTGYSTAADVLESLSGKHPIIDEILLYRQLGKLQSTYVEGL 618

Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
            +       ++         ++TGR S      QN+P +                     
Sbjct: 619 LKVTDKKTSKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------------------- 656

Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   + S  G K+  AD + +E RVLA I+ ++  + AF N  DI+  T 
Sbjct: 657 ---LEEGRKIRQVFVPSHPGWKMFSADYSQVELRVLAHISQDENLVYAFRNDYDIHTKTA 713

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
              F+    +V    R   K +   + Y     G ++            + ++  +    
Sbjct: 714 MDVFHVSEAEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAKDFIDRYFASYPDV 773

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             + +                       +  S +  ++      A+   + G+A +++K+
Sbjct: 774 KVYMEEIVRSAKEKGYVETILHRRRYIPEITSRNFNVRSFAERTAMNTPIQGSAADIIKQ 833

Query: 509 AW 510
           A 
Sbjct: 834 AM 835



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M    +          ++L VHDE++ E P+     +  +   +M   
Sbjct: 823 IQGSAADIIKQAMLLMDERLESEQMEAKLLLQVHDELIFEAPEAEIAKLAEIVPDVMENA 882

Query: 655 PSWAKGLPLKAEGYEAKRY 673
              A  +PLK +      +
Sbjct: 883 V--ALSVPLKVDSAHGDSW 899


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 90/596 (15%), Positives = 196/596 (32%), Gaps = 97/596 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A++  D   KL+   +   +   + +   ++T + V ++    ++L  + LG+D+ +  
Sbjct: 337 FAWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-YDFKKAKVLLHR-LGVDLQAPA 391

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               +       +++       + KG   + P        
Sbjct: 392 F--DSRLAKYLLSTVEDNEIATIASLYGQTYLVDD----ETFYGKGVKKALPER------ 439

Query: 153 VQAWQLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202
               + F E+  R     VE    L ++L        L D E+ L  +   +   G  + 
Sbjct: 440 ----EKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVK 495

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +L++Q       +KL ++I +L      +      L + LF   G+ L    +    
Sbjct: 496 KETLLEMQTENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA    + +       I K+ +     L + + +DG++         ++T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQT 613

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAV 709

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G +             +  + +       + D                 
Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                    S +  ++      A+   + G+A +++K A     + +++           
Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQ------- 822

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +    +    V  VP+  +   K+ V   +  + +L    +  +        ++
Sbjct: 823 -TKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 77/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +     ++    +  K   G+DI    +    ++A        L  A  
Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +++KKA 
Sbjct: 808 NTPIQGSAADIIKKAM 823


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/509 (15%), Positives = 164/509 (32%), Gaps = 73/509 (14%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
            D   + L D  +    P+    +L D +   +  +S  ++++     G+D+    +   
Sbjct: 349 LDSHEIYLADWDQAIQSPA-FKAWLADASNQKILFDSKRDQVILANA-GLDLAGIDF--D 404

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
            ++A       L   L +     +    +   E      A + KG+  + P      +H+
Sbjct: 405 IMIANYLIDTHLAKELADMLTNNDMPSLVKYDE------AVYGKGAKQAVPDSAELNDHL 458

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
                        +    +           E  L  +   +  +G ++D  ++    + +
Sbjct: 459 ANKVKAMGLLVEPLTQQLKDLHMWDLYQTIEMPLARVLARMEIQGVKVDAQILADKNQAL 518

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            +   +++ +I  L      +      L + LF    + ++  ++       +   + +L
Sbjct: 519 LERLAQMEAEIYDLAGEEF-NINSVKQLGVILFEKLELPIIKKTKTG--YSTAADVLEKL 575

Query: 274 AKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           A    +         I KL       L   +  DG++         ++TGR S      Q
Sbjct: 576 ADKHPIIPAILEYRQISKLQGTYLAGLPTYIKEDGKIHSRFV-QTLTQTGRLSSADPNLQ 634

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P +                              +R   + +  G +L  AD + IE R
Sbjct: 635 NIPAR------------------------IEEGRRIRQAFVPAHEGWQLFGADYSQIELR 670

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQ---- 442
           VLA IA +   I AF +GEDI+  T  + F    D V     R   K +   + Y     
Sbjct: 671 VLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIVYGISDY 730

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------- 481
           G +        H    ++ + +       F +   AE+                      
Sbjct: 731 GLSNNLNIPRKHAKAFIENYFEKYPDIHQFMEDIVAEAKEKGYVETLFKRRRYLPDIDAS 790

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           +  ++      A+   + GTA +++K A 
Sbjct: 791 NFNIRSFAERTAMNSPIQGTAADIIKIAM 819


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELXGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V    +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 89/570 (15%), Positives = 173/570 (30%), Gaps = 112/570 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVIT--LCAYAWDDE--------PV-----KLWDRTEQ 50
           ID+ET    PL             I     A+A            PV      +    + 
Sbjct: 379 IDLETTGLDPLRD----------EIVGWAIAWAAQHGQPGRAVYLPVLGPPGSV--LLDG 426

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           +A+   L   L +     +  N  F+ +  +K   + I        +++         L 
Sbjct: 427 TAVVQTLKPILENPQCQLINQNVKFDLLAMRK---VGIRPATIGLDTMVGDYL-----LD 478

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-- 168
               + N      K      +       S         +  +    +   EY   D E  
Sbjct: 479 AGARSHNLEVLGQKYLSAATI-----PISDLLGSGKNQKTMNQIEIERVAEYATEDAELV 533

Query: 169 ------ATRELFKR-LIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                    +L +  L  L  + E+ L  +   +  +G ++D+  + +  + ++    +L
Sbjct: 534 VRMAPIIESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELSITLARL 593

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
             +I +L      +      LR  LF    + +   ++           +  LA    L 
Sbjct: 594 MSEIHELAGREF-NIDSPMQLRKILFEELKLPVQKKTK--TGPSTDQEVLELLAPLHPLP 650

Query: 281 RLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +    + KL     + L   V    GR+  +     A+ TGR S      QN+P + 
Sbjct: 651 AKITEHRHLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAA-TGRLSSSDPNLQNIPIRT 709

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIA 393
                                        +R   ++     +LV AD + IE R+LA  +
Sbjct: 710 ------------------------PEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFS 745

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAKVFKT 450
            +   + AF +GEDI+    A+     ++ V+ + R I K +   + Y     G      
Sbjct: 746 QDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSPYGLSAALG 805

Query: 451 MASHCG-LDLQQFSQNVKSTSTFEDWEQAE-----------------------SHHLWMQ 486
           ++       + ++       +TF +    E                             +
Sbjct: 806 ISREAATTFIDEYFTRYAGVTTFMENVLDECLATGYARTILGRRRPIEGVRGPRERNRNR 865

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +      +   + G+A +L+K A    H  
Sbjct: 866 NMAERTGINTVIQGSAADLIKMAMIRVHHR 895


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/492 (15%), Positives = 152/492 (30%), Gaps = 65/492 (13%)

Query: 77  RILFKKTLGIDIPSKRWICTSVL-ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           R+ F + L      K+   + VL +        L+   L +  + +L      K      
Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
            K  I         A    A     +  K  +E    L   L    + E  L  +   + 
Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKETLE-ELGLSALL---HEMEEPLSPILAEME 485

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
            +G  +D+  + +    +  E ++L+++I         +      L   LF   G+  + 
Sbjct: 486 KQGIAVDVQRLQEFGRELTVELQRLEQEIYADAGETF-NINSPQQLGHILFEKLGLPPMK 544

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            ++    T    L          + +L+    S      +N L   +   GR+  T Q  
Sbjct: 545 KTKTGYSTDADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQ-Q 602

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371
             + TGR S      QN+P +                              +R       
Sbjct: 603 TVTATGRLSSTEPNLQNIPIR------------------------LELGRLLRKVFTPTQ 638

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  L+ AD + IE R+LA  + ++   ++F+  +D++  T ++ F  P+ +V+K+ R  
Sbjct: 639 EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRK 698

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            K +   L Y     G  +            ++ +    +    + +    ++       
Sbjct: 699 AKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVR 758

Query: 488 QY---------------------PEFAVKDKLIGTACELVKKAW----RAKHQGVLQLWK 522
                                     A+   + GTA +++K A      A       L  
Sbjct: 759 TLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLL 818

Query: 523 DLTEGFACVVQE 534
            + +     V  
Sbjct: 819 QVHDELVIEVAP 830



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
           +R +G ++  N  +Q  + DI+   M    +       +++L VHDE+V E        V
Sbjct: 777 QRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEV 836

Query: 645 GTLCS 649
             +  
Sbjct: 837 AKVVR 841


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 166/485 (34%), Gaps = 70/485 (14%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
           +DET      ++    ++       D+         ++A     PS  S   + +A    
Sbjct: 361 KDETKKKWLLDAKRGVVVL---GWKDVLLDGVDFDLLMASYLLDPSHSSHDLSDIATRKG 417

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               + +E     A + KG+    P     A H+          K  +E   +  ++   
Sbjct: 418 AKSIQADE-----AVYGKGAKRKVPETDVLAEHLVRKANVIYELKERMEEELKKNEQFEL 472

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D E  L ++   +   G ++D+D +  + E +A    +L++ I +       +     
Sbjct: 473 FKDLEMPLSVVLGRMETEGVKVDIDQLKAMGEDLASRLAELEKHIHEHAGVSF-NINSPK 531

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294
            L   LF   G+ ++  ++       S   + +LA+D  + R       + KLN+     
Sbjct: 532 QLGEVLFEKLGLPVIKKTKTG--YSTSADVLEKLAEDHEIIRHILHYRQLGKLNSTYIEG 589

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L +       ++         ++TGR S      QN+P +                    
Sbjct: 590 LVKVTHKGTSKIHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 628

Query: 354 ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   I    G K++ AD + IE RVLA IA ++  I AF    D++  T
Sbjct: 629 ----LEEGRKIRKAFIPSEEGWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKT 684

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
               F+   + V+   R   K +   + Y     G ++            ++++  +  +
Sbjct: 685 AMDVFHVSEEDVTSMMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLASYPN 744

Query: 469 TSTFEDWEQAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVK 507
            + + +    E+         L  +   PE               A+   + GTA +++K
Sbjct: 745 VAEYMERIIEEARENGYVSTLLNRRRYLPELTSRNFNQRSFAERTAMNTPIQGTAADIIK 804

Query: 508 KAWRA 512
           KA   
Sbjct: 805 KAMVE 809



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 16/133 (12%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++  +    R       V    +R +     +       + +    YL   TS+   +
Sbjct: 726 ITRKEAAKFIERYLASYPNVAEYMERIIEEARENGYVSTLLNRR---RYLPELTSRNFNQ 782

Query: 591 RTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFS 643
           R++  +   N  +Q  + DI+ + M        +      ++L VHDE++ E P      
Sbjct: 783 RSFAERTAMNTPIQGTAADIIKKAMVEMALRLEEANLKSRLLLQVHDELIFEVPP----- 837

Query: 644 VGTLCSLMTKNPS 656
              +  +M   P 
Sbjct: 838 -EEVDEMMKIVPE 849


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 52  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 109

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 110 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 165

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 166 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 220

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 221 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 279

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V    +   T+     ++TGR S      QN+P +       
Sbjct: 280 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 332

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 333 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 375

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 376 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEA 435

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 436 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 495

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 496 NTPIQGSAADIIKKAMIDLN 515



 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 388 TAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFP 447

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 448 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 507

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 508 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 550


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
          Length = 878

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 86/522 (16%), Positives = 168/522 (32%), Gaps = 72/522 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLRDETVMCVAHNSLFER-ILFKKTLGIDIP 89
           +   AW D    ++  T+ S +  DL  + L     +       F+R  +    LGID+ 
Sbjct: 336 MIGLAWGD-DQAIYATTDTSLLTHDLFKEALSKP--IKT---YDFKRGKVLLSHLGIDLL 389

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           +  +   S LA+         N          L    +       + KG+  + P     
Sbjct: 390 TASF--DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDV----YGKGAKRAIPEKNVL 443

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
            +H+          +  +        +L  L + E  L  +   +   G  +  + +  +
Sbjct: 444 LSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETLQDM 503

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           +     E + L ++I  L      +      L + LF   G+ L    +       +   
Sbjct: 504 ERANEIELQALTQEIYDLAGEAF-NINSPKQLGVILFEKLGLPLSATKKTKTGYSTAVDV 562

Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +LA    +         I KL +     L +++S DG++         ++TGR S   
Sbjct: 563 LERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRY-LQDLTQTGRLSSVD 621

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +R   +    +  L+ +D + 
Sbjct: 622 PNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSDYSQ 657

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ 442
           IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y 
Sbjct: 658 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYG 717

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQ 477
               G A             ++ + +       + D                        
Sbjct: 718 ISDFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPD 777

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             S +  ++      A+   + G+A +++K A     Q + +
Sbjct: 778 INSRNFNIRSFAERTAINSPIQGSAADILKVAMIHLDQALKK 819


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 89/543 (16%), Positives = 164/543 (30%), Gaps = 72/543 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D      AH+     +       +D+P       + LA    LP   S   A L   +
Sbjct: 429 LADPNQPKAAHDVKGPMLALT---ELDLPLAGVTSDTALAAYLALPGQRSFDLADLVARY 485

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  +           G   S   D   A+ V+A          D +  R     L 
Sbjct: 486 LHRDLSADPVPGGQQLTLDG---SGEADQAHADAVRARACLELADALDADLERRSAATL- 541

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            L D E  L  +   +   G  +D + + +LQ+    E   +     ++      +    
Sbjct: 542 -LRDIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGRPF-NLGSP 599

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NT 294
             L+  LF   G+      +    +         +  D  L  +      + +L    ++
Sbjct: 600 KQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLKTVVDS 659

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L   +   GR+  T     A+ TGR S      QN+P +                     
Sbjct: 660 LIPMIDDIGRIHTTFNQTIAA-TGRLSSADPNLQNIPIRT-------------------- 698

Query: 355 DPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G   L+ AD + IE R++A ++G++  I+AF +GED++    
Sbjct: 699 ----AEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVA 754

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           A+AF  P+ +V  E R   K M   L Y     G A             +  +       
Sbjct: 755 AEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGV 814

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             F                            S +   +      A+   + G+A +++K 
Sbjct: 815 RDFLRGVVERARKDGYTETILGRRRYLPDLTSDNSQRRQMAERMALNAPIQGSAADIIKI 874

Query: 509 AWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           A     + +       +L   + +     +  G   +  R+              + + +
Sbjct: 875 AMLGVDRALCAGGYASRLLLQVHDELVLEIAPGEHDAVERLVRAEMTSAYTMSVPLDVSV 934

Query: 563 PSS 565
            + 
Sbjct: 935 GAG 937



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 71/239 (29%), Gaps = 33/239 (13%)

Query: 425 SKEQRAIGKVMELALGYQGGAKV------FKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           + E R I +   +  GY+            + MA   G   +   +   S      +  A
Sbjct: 698 TAEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGD--EGLIEAFGSGEDLHTFVAA 755

Query: 479 ESHHLWMQDQYPEFAVKDK-LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
           E+  L + +  PE   + K +       +     A   G+                 G  
Sbjct: 756 EAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVR 815

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGK 596
              R V    R            +L   R L       D +  N+   Q+  R       
Sbjct: 816 DFLRGVVERAR-----KDGYTETILGRRRYL------PDLTSDNSQRRQMAERMALNAP- 863

Query: 597 LTENIVQAISRDILCEGMKNATKN----GY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649
                +Q  + DI+   M    +     GY   ++L VHDE+V E     + +V  L  
Sbjct: 864 -----IQGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEIAPGEHDAVERLVR 917


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 77/492 (15%), Positives = 152/492 (30%), Gaps = 65/492 (13%)

Query: 77  RILFKKTLGIDIPSKRWICTSVL-ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           R+ F + L      K+   + VL +        L+   L +  + +L      K      
Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
            K  I         A    A     +  K  +E    L   L    + E  L  +   + 
Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKETLE-ELGLSALL---HEMEEPLSPILAEME 485

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
            +G  +D+  + +    +  E ++L+++I         +      L   LF   G+  + 
Sbjct: 486 KQGIAVDVQRLQEFGRELTVELQRLEQEIYADAGETF-NINSPQQLGHILFEKLGLPPMK 544

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            ++    T    L          + +L+    S      +N L   +   GR+  T Q  
Sbjct: 545 KTKTGYSTDADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQ-Q 602

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371
             + TGR S      QN+P +                              +R       
Sbjct: 603 TVTATGRLSSTEPNLQNIPIR------------------------LELGRLLRKVFTPTQ 638

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  L+ AD + IE R+LA  + ++   ++F+  +D++  T ++ F  P+ +V+K+ R  
Sbjct: 639 EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRK 698

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            K +   L Y     G  +            ++ +    +    + +    ++       
Sbjct: 699 AKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVR 758

Query: 488 QY---------------------PEFAVKDKLIGTACELVKKAW----RAKHQGVLQLWK 522
                                     A+   + GTA +++K A      A       L  
Sbjct: 759 TLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLL 818

Query: 523 DLTEGFACVVQE 534
            + +     V  
Sbjct: 819 QVHDELVIEVAP 830



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
           +R +G ++  N  +Q  + DI+   M    +       +++L VHDE+V E        V
Sbjct: 777 QRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEV 836

Query: 645 GTLCS 649
             +  
Sbjct: 837 AKVVR 841


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 86/558 (15%), Positives = 183/558 (32%), Gaps = 108/558 (19%)

Query: 11  RSPQPLPKVGVWAYAEQAVITL-CA--YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
            S   L K  ++   E  V  +     Y+ + +   L            L   + +E + 
Sbjct: 333 YSEIELSK--IYLSNEDKVYLINFKNIYSVNKDEANLA-----------LKAIMENEELT 379

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            + H+      +  K   +DI  K +   + +A    + S+  +  L    +E+L +   
Sbjct: 380 KIIHDGKSLVTVLNK---LDISIKTFEFDTAIAAYL-IDSARSSYDLLTLINEYLGEDIT 435

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
           G+  I    +G ++    D       +  +   E                      E  L
Sbjct: 436 GEGEI---LEGKVNFKLRDIYELLKKKIEEEKMEEL----------------YYKVEHPL 476

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +  ++   G+ I+ +++  L     +E  + +++I  L +    +      L   LF 
Sbjct: 477 IFVLSSMEALGFNINKNMLDDLAIKFKEEITRTEKEIYDLAEEEF-NINSPKQLGKILFE 535

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD 302
              + ++  ++       +   + +L     +    +    I KLN+     L   + SD
Sbjct: 536 KLDLPVIKKTK--TGYSTNAEVLEKLQDKHEIIPKITYYRQITKLNSTYVEGLKNVIDSD 593

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G +  +      + TGR S      QN+P +                             
Sbjct: 594 GHIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGR 628

Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   I    G  L+  D + IE RVLA ++ ++  I AF +  DI+  T ++ F  PI
Sbjct: 629 EIRKVFIPDEEGDILLSCDYSQIELRVLAHMSNDENMIDAFKHHSDIHTKTASEVFKVPI 688

Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           + V+   R+  K +   + Y       ++            ++ + +       + D   
Sbjct: 689 EDVTSLMRSRAKAVNFGIVYGISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVM 748

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA---- 512
                               + +S +  ++      A+   + G+A +++K A       
Sbjct: 749 QEAKENGYVLTILNRRRFIPEIKSSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNK 808

Query: 513 ------KHQGVLQLWKDL 524
                 K   +LQ+  +L
Sbjct: 809 LKEKELKSTMILQVHDEL 826



 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 12/192 (6%)

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +   S  E+   A  HH  +  +      K  +      +  +A +A + G++     ++
Sbjct: 656 LAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRA-KAVNFGIV---YGIS 711

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           +             A     +      + K  +  V+  ++   Y     +         
Sbjct: 712 DFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNRRRFIPEIK 771

Query: 586 QLMRE-RTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETP 637
              R  +  G +L  N  +Q  + DI+   M N      +      ++L VHDE++    
Sbjct: 772 SSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLKEKELKSTMILQVHDELILNVK 831

Query: 638 DTPYFSVGTLCS 649
           +     V  +  
Sbjct: 832 ENELEEVKQIVK 843


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 84/576 (14%), Positives = 182/576 (31%), Gaps = 84/576 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           L  +AW ++  +++   + S + ++L + + ++ +        F+R  +    LG+D+P+
Sbjct: 344 LIGFAWGNQG-QIYASADISLLTTELFKKVLEQPIATY----DFKRSKVLLSHLGLDLPA 398

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA                     +    +       + KG   + P      
Sbjct: 399 ASY--DARLANYLLSTVEDNEMATLARLYTTIPLDTD----EVVYGKGVKRAVPDKAVLL 452

Query: 151 NHVQAWQLFGEYCKRDVEATR---ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            H+       +                ++    +D E  L  +   +   G  ++ D + 
Sbjct: 453 GHL---ARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIEGIAVNQDSLQ 509

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++ E      ++L ++I ++   +  +      L + LF    + L    +       + 
Sbjct: 510 EMAEQNKVVIEELTQEIYEMAGEVF-NINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAV 568

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA    +         I KL +     L + + +DGR+         ++TGR S 
Sbjct: 569 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRY-LQDLTQTGRLSS 627

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P +                              +R     S+    L+ +D 
Sbjct: 628 VDPNLQNIPIR------------------------LEQGRLIRKAFTPSHDDAVLLSSDY 663

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440
           + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + 
Sbjct: 664 SQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIV 723

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G +             +  + +       + +                      
Sbjct: 724 YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRRQL 783

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
               S    ++      A+   + G+A +++K A     Q ++              +  
Sbjct: 784 PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALV--------AGGFETKML 835

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             +    V  VP   +   K  V   + S+  L   
Sbjct: 836 LQVHDEIVLEVPNHELAAVKELVKETMESAVNLAVP 871


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
          Length = 877

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321]
 gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321]
          Length = 877

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 88/596 (14%), Positives = 194/596 (32%), Gaps = 97/596 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A+++ D   KL+   +   +   + +   ++T + V ++    ++L     G+D+ +  
Sbjct: 337 FAWSYGD---KLYATDKLELLQEPIFKDFLEKTPLRV-YDFKKAKVLLNH-FGVDLQAPA 391

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +   S LA+               +       +++       + KG   + P        
Sbjct: 392 F--DSRLAKYLLSTVEDNEIATIASLYGQTYLVDD----ETFYGKGVKKAIPER------ 439

Query: 153 VQAWQLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202
               + F E+  R     +E    L ++L        L D E+ L  +   +   G  + 
Sbjct: 440 ----EKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVK 495

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            + +L++Q       +KL ++I +L      +      L + LF   G+ L    +    
Sbjct: 496 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
              +   + +LA    + +       I K+ +     L + + +DG++         ++T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQT 613

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAV 709

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474
              + Y     G +             +  + +       + D                 
Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKTYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769

Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                    S +  ++      A+   + G+A +++K A     + ++            
Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGY 821

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +    +    V  VP+  +   K+ V   +  + +L    +  +        ++
Sbjct: 822 QTKMLLQVHDEIVLEVPKSELTEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 576

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 577 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 630

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 631 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 671

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 731

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 791

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 792 AMNTPIQGTAADIIKKAM 809



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 862

Query: 663 LKAE 666
           LK +
Sbjct: 863 LKVD 866


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 132/371 (35%), Gaps = 67/371 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E  L  +   + D G  +D+D++ +  + IAQ+    ++    L D    +     
Sbjct: 479 YADLELPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPK 538

Query: 240 ALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            L + LF    +     ++           TL +   H  + QL       +L S+    
Sbjct: 539 QLSVVLFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKST---- 594

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + V  DGR+  T     AS TGR S      QN+P +  +             
Sbjct: 595 --IEGLIKTVHDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA------------- 638

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +RS     +G + L+ AD + IE RV+A ++ +   I+A+  GED+
Sbjct: 639 -----------GRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDL 687

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++ F+ PID V+ E R   K M   L Y     G +      A      ++ + Q
Sbjct: 688 HNFVGSRVFDVPIDDVTPELRRRVKAMSYGLVYGLSAYGLSNQLGIPAGEAKKIMESYFQ 747

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
                  + D    ++                          ++     A+   + GTA 
Sbjct: 748 RFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQGTAA 807

Query: 504 ELVKKAWRAKH 514
           +++K A     
Sbjct: 808 DIIKVAMIRVD 818



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            A+++           KR +  V+  +RR  Y+  V G   YL   TS     R    + 
Sbjct: 737 EAKKIMESYFQRFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERA 796

Query: 598 TENI-VQAISRDILCEGMKNATKNGYD----------IVLTVHDEIVSETPDTPYFSVGT 646
             N  +Q  + DI+   M        D          ++L VHDE+V E        V  
Sbjct: 797 ALNAPIQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPGELEQVQA 856

Query: 647 LCS 649
           +  
Sbjct: 857 IVE 859


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 880

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/494 (14%), Positives = 155/494 (31%), Gaps = 69/494 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           L + L  + +        F+R  +      ID+P   +   + LA+     +        
Sbjct: 358 LQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAF--DTRLAKYLLSTTEDNLVSTI 415

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174
                +L    +       + KG+  + P       H+            +    ++L  
Sbjct: 416 ARLYTNLPLDTDDAV----YGKGAKRAIPEKTRFLEHLAK--KVKVLVDSEANIMQQLKA 469

Query: 175 -KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++   L + E+ L  +   +  RG ++  + + ++     +  + L ++I +L      
Sbjct: 470 NEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF   G+ +    +       +   + +LA    L         I KL 
Sbjct: 529 NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + +  DG++         ++TGR S      QN+P                 
Sbjct: 589 STYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSSSDPNLQNIP----------------- 630

Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   + S     L+ +D + IE RVLA I+ ++  I AF  G D
Sbjct: 631 -------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F     + V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTY 743

Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       + +                          S +  ++      A+   + G+
Sbjct: 744 FERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQ 515
           A +++K A     +
Sbjct: 804 AADILKIAMINLDR 817


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 88/572 (15%), Positives = 183/572 (31%), Gaps = 75/572 (13%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
            TE   +         D  +    H+   F  I++ K  GI++    +  T + A     
Sbjct: 366 LTENEFL-EGFKSIFEDGEIKKYGHDLKNF--IVYLKQNGIELNGVAF-DTMIGAYIINP 421

Query: 106 PSSLKNACL--ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
                      A   + ++  +EE       F               N V  +       
Sbjct: 422 SRETYTISELAADFLNTNVKPIEEMAGKGKSFL---PFGSMDVEELKNVVGLYPEIIYKA 478

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            + ++       +L      E  L  +   +   G++I+++ +  +   + ++  +L   
Sbjct: 479 MKKIDDKLNENDQLNLYYKIELPLVRVLADMEFYGFKININELTVISRQLDEKINQLTLK 538

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I +L      +      L + LF    + ++  ++           + +LA+   +    
Sbjct: 539 IYELAGEEF-NINSPKQLGVVLFEKLELPIIKKTK--TGYSTDAEVLEELAEKHEIVSNI 595

Query: 284 SSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                ++KL +     L   ++   G++  +      + TGR S      QN+P      
Sbjct: 596 LEYRQLVKLKSTYIEGLMAVINPHTGKIHSSFN-QTVTVTGRISSTEPNLQNIP------ 648

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396
                                     +R   +  +G  KLV AD + IE RVLA I  ++
Sbjct: 649 ------------------IKLEMGRNIRKAFVPCDGNYKLVDADYSQIELRVLAHITDDE 690

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             I AF N EDI+ +T +K F  P ++V+   R+  K +   + Y  G    +K      
Sbjct: 691 NMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGIGDFSLSKDLGITR 750

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 +  +     +   +                         + ++ +  ++     
Sbjct: 751 KEARNYIDGYLDKYANVRKYMHDIVAQGKEFGFVTTMFNRRRYLPELKASNFNVRSFGER 810

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + G+A +++K A    H  + +  + L       V +   I A         ++
Sbjct: 811 IAMNTPIQGSAADIIKIAMVMVHSELNR--RQLKSRLILQVHDELIIEAHESELEEVTMI 868

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
            +   +    L     +   DVK   S+  T 
Sbjct: 869 LKESMENATALKVPLSV---DVKSGNSWYETK 897



 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M               ++L VHDE++ E  ++    
Sbjct: 805 RSFGERIAMNTPIQGSAADIIKIAMVMVHSELNRRQLKSRLILQVHDELIIEAHESELEE 864

Query: 644 VGTL 647
           V  +
Sbjct: 865 VTMI 868


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 141/423 (33%), Gaps = 70/423 (16%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARR 542
               A+   + G+A +++K A     + ++      ++   + +     V +   +  ++
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKK 847

Query: 543 VAN 545
           +  
Sbjct: 848 LVK 850


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/524 (13%), Positives = 162/524 (30%), Gaps = 76/524 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           L   AW +        T   ++  +    + L     +   ++    ++L  +    +I 
Sbjct: 338 LIGIAWGNSD--TIYATSDVSLLQEALFKKALSKP--IKT-YDFKRSKVLLNRF---NID 389

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                  + LA+     +             +L    +       + KG+  + P     
Sbjct: 390 LPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAV----YGKGAKRAIPEKTRF 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             H+            +    ++L   ++   L + E+ L  +   +  RG ++  + + 
Sbjct: 446 LEHLAK--KVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLN 503

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++     +  + L ++I +L      +      L   LF   G+ +    +       + 
Sbjct: 504 EMAIENQKVIETLTQEIYELAGQEF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAV 562

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA    L         I KL +     L + +  DG++         ++TGR S 
Sbjct: 563 DVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSS 621

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P                                +R   + S     L+ +D 
Sbjct: 622 SDPNLQNIP------------------------VRLEQGRLIRKAFVPSEDNAVLLSSDY 657

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440
           + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R   K +   + 
Sbjct: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIV 717

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G +             +  + +       + +                      
Sbjct: 718 YGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSL 777

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               S +  ++      A+   + G+A +++K A     + + +
Sbjct: 778 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLYK 821


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 84/519 (16%), Positives = 170/519 (32%), Gaps = 70/519 (13%)

Query: 28  AVITLCAYAWDDEPV--KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A I   +   DD+ +     D  ++      +   L  + V     +   + +   + LG
Sbjct: 344 AEIIGFSIKIDDKYLVSDDIDLLKK----KQIKNLLESDEVEVDLFDGKRQYVGLNR-LG 398

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           + +   +     +L     L +S  +  L L   +H     E    I  + KG+  + P 
Sbjct: 399 VTL--SKINFDLLLVSYL-LDNSENSNDLGLLAQQHEYYDVESDEQI--YGKGAKHAVPK 453

Query: 146 DCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           D      H+          K  +    E  ++L   +  ER L ++   +   G ++D +
Sbjct: 454 DKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSN 513

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            +  +Q  + +   +L+++I         +      L + LF    + ++  ++    T 
Sbjct: 514 RLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEKLKLPVIKKTKTGYSTA 572

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L          D IL     +      +  L + VS  DG+          + TGR 
Sbjct: 573 VGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYT-QTLTSTGRL 631

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P                                +R   + S  G ++  +
Sbjct: 632 SSVDPNLQNIP------------------------VRLEEGRKIRQAFVPSHPGWEIFSS 667

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ +    +AF  G DI+ +T  + FN    D+V+   R   K +   
Sbjct: 668 DYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFG 727

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------- 475
           + Y     G ++            +  +         + +                    
Sbjct: 728 IVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRR 787

Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                +S +  ++      A+   + G+A +++K A   
Sbjct: 788 YLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMIN 826


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 141/423 (33%), Gaps = 70/423 (16%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARR 542
               A+   + G+A +++K A     + ++      ++   + +     V +   +  ++
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKK 847

Query: 543 VAN 545
           +  
Sbjct: 848 LVK 850


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 131/396 (33%), Gaps = 64/396 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  L  +   + + G+ +D + +    E +  E + L + I +       +     
Sbjct: 456 LEEMEIPLAQVLARMENIGFLVDGESIRVYGERLETEIEALQKQIYEEVGYEF-NINSPK 514

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF+  G+     ++    T   IL        A +L+L+    +         + 
Sbjct: 515 QLGDALFVKLGLPSGKKTKTGYSTNAEILEKLRYDHPAVELVLHYRTLTKLKSTYCEGML 574

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +  DGR+         +RTGR S      QN+P +                       
Sbjct: 575 KVIGPDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRT---------------------- 611

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +A  G  LV AD + IE RVLA IA ++  IKAF + EDI+  T ++ 
Sbjct: 612 --ELGRELRKFFLAKEGWVLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQV 669

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P + V+   R+  K +   + Y  GA    K            +  +         +
Sbjct: 670 FGMPPEMVTPLMRSRAKAVNFGIVYGIGAFSLSKDINVSRKEAQRYIDDYLTLYSGVDRY 729

Query: 473 E---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                                    +  + +  ++      A    + GTA +++K A  
Sbjct: 730 MKEVVEKAKEDGYVETLFHRRRYLPELTASNFNLRAFGERVARNMPIQGTAADIIKIAMV 789

Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGS 537
              +           +LQ+  +L         E  +
Sbjct: 790 RVDRRLKRENMRARLILQVHDELIVEAPEDEAEQAA 825



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 13/138 (9%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A+R  +    +     R +  V+  ++   Y +       YL   T+     R +G ++
Sbjct: 711 EAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVETLFHRRRYLPELTASNFNLRAFGERV 770

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
             N+ +Q  + DI+   M    +          ++L VHDE++ E P+           +
Sbjct: 771 ARNMPIQGTAADIIKIAMVRVDRRLKRENMRARLILQVHDELIVEAPEDEA---EQAARI 827

Query: 651 MTKNPSWAKGL--PLKAE 666
           +T+    A  L  P+ AE
Sbjct: 828 LTEEMEGAVSLTVPMVAE 845


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 77/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +     ++    +  K   G+DI    +    ++A        L  A  
Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +++KKA 
Sbjct: 808 NTPIQGSAADIIKKAM 823


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7]
 gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11]
          Length = 237

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T   H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  +
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQR 237


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 576

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 577 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 630

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 631 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 671

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 731

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 791

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 792 AMNTPIQGTAADIIKKAM 809



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862

Query: 663 LKAE 666
           LK +
Sbjct: 863 LKVD 866


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 85/510 (16%), Positives = 172/510 (33%), Gaps = 99/510 (19%)

Query: 53  MPSDLLQY-------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           +P+D+          L+DE +     ++    +  K   G++I    +    ++A     
Sbjct: 347 IPTDIALASEAFIKWLKDEEMRKYTFDAKRAIVALK-WKGVEIRGVDF--DLLIAAYL-- 401

Query: 106 PSSLKNACLALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              L  A    +F   + KM+E  A+      + KG+  + P     A HV         
Sbjct: 402 ---LDPADTDKDF-RTVAKMKETHAVKSDEEVYGKGAKRAVPAQEIVAEHV--------- 448

Query: 163 CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             R V    ++ +  I   +           E  L  +   +  +G ++D + +  + + 
Sbjct: 449 -ARKVHVLYDVKQTFIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERLRNMGDE 507

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           +A   K+++++I +L      +      L + LF    + ++  ++       S   + +
Sbjct: 508 LAGRLKEMEQEIYELAGTEF-NINSPKQLGVVLFEKLNLPVIKKTKTG--YSTSADVLDK 564

Query: 273 LAKDLILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
           L     +         + KLN+      L        ++         ++TGR S     
Sbjct: 565 LMDHHEIIPKILHYRQLGKLNSTYIEGLLKVVHDESSKIHTRFN-QVLTQTGRLSSTEPN 623

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            QN+P +                              +R   I S  G  +  AD + IE
Sbjct: 624 LQNIPIR------------------------LEEGRKIRQAFIPSQEGWVMYAADYSQIE 659

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RVLA IA +   I+AF +  DI+  T    F    D+V+   R   K +   + Y    
Sbjct: 660 LRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIVYGISD 719

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G ++         G  ++++  +      + D                       +  S
Sbjct: 720 YGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITS 779

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +  ++      A+   + G+A +++KKA 
Sbjct: 780 RNFNVRSFAERTAMNTPIQGSAADIIKKAM 809



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        + G    ++L VHDE++ E P      +  L   +M   
Sbjct: 797 IQGSAADIIKKAMIVMADRLEEEGLQARLLLQVHDELIFEVPKEEIEKLEKLVPEVMEHA 856

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 857 IELA--VPLKVD 866


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 136/445 (30%), Gaps = 63/445 (14%)

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           H   M   +  +    KG+    P D     ++       E     V+   +  ++    
Sbjct: 407 HYMLMAPNEEAV--LGKGAKRLAPADDVLHPYLAEKARMIELLFPKVKEELKANQQFELY 464

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              ER L  +   +   G R+D+  + ++Q  +A     L++ I         +      
Sbjct: 465 ETLERPLSGVLAEMEWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYGEVGEEF-NINSPKQ 523

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L + LF    +     ++    T   +L          D I+            +  L +
Sbjct: 524 LGVILFEKMELPAFKKTKTGYSTAADVLEKLRPLHPVIDHIMLYRELQKLQSTYVEGLQK 583

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +  DG++        A +TGR S      QN+P                          
Sbjct: 584 VIKEDGKIHTRFAQTIA-QTGRLSSVNPNLQNIP------------------------VR 618

Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   + S  G  L  AD + IE RV+A ++ +   ++AF +  DI+  T +  
Sbjct: 619 IEEGRKIRKAFVPSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSV 678

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F    + V+   R   K +   + Y     G ++            + ++ +       F
Sbjct: 679 FGVAPNDVTGNMRRQAKAVNFGIIYGISDYGLSQNLNISRKEAQDFIDRYFELFPQIKLF 738

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D                          S +  ++      A+   + G+A +++KKA  
Sbjct: 739 MDAAIEKARMNGFVETLMNRRRNIPDINSKNFNLRGFAERTAINTPIQGSAADIIKKAML 798

Query: 512 AKH------QGVLQLWKDLTEGFAC 530
             H          +L   + +    
Sbjct: 799 DVHAALEQSPLRARLLLQVHDELIF 823



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DI+ + M +             ++L VHDE++ E PD    ++ TL    M + 
Sbjct: 785 IQGSAADIIKKAMLDVHAALEQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQT 844

Query: 655 PSWAKGLPLKAEG 667
                 +PL+ +G
Sbjct: 845 VQ--LSVPLRVDG 855


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 83/520 (15%), Positives = 175/520 (33%), Gaps = 68/520 (13%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            +   D    L  R  +    + L + L    V     N+   +I+    LGID+ +  +
Sbjct: 341 GFVIGDGTTWLVSRDAELLKQAPLKKLLESPAVAKNVFNAK-AQIVGLHRLGIDLRNVDF 399

Query: 94  --ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRA 150
             +  S L  TN   + L    L  ++   +   EE       + KG+  + P D  T  
Sbjct: 400 DLLLASYLLNTNDNSNDLGQVALEHDY-HEVATDEEV------YGKGAKRAIPDDDQTFY 452

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H+          +  +    +  ++    ++ E  L  +   +   G +++   +  + 
Sbjct: 453 THLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVNSQTLKDMG 512

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILS 266
             + +    +++ I         +   T  L   LF    + ++  ++      +  +  
Sbjct: 513 SKLTERLADIEDQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEK 571

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            ++   + +D++  R  +   +      L    SSD ++         ++TGR S     
Sbjct: 572 LADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVDPN 630

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            QN+P                                +R   + S  G ++  +D + +E
Sbjct: 631 LQNIP------------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVE 666

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ-- 442
            RVLA I G+    + F NGEDI+ +T  + F+ P D ++ +  R   K +   + Y   
Sbjct: 667 LRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNFGIVYGIS 726

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------------------ 482
             G A+      S     +Q + +       + D   A +                    
Sbjct: 727 DYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHRRRYLPDIH 786

Query: 483 ---LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                 +      A+   + G+A +++K A     + + Q
Sbjct: 787 AKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQ 826


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/539 (16%), Positives = 169/539 (31%), Gaps = 81/539 (15%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL-NFSEHLTKMEEGKALIARFCK 137
           LFKK L   I +  +  + VL    GL     +    L N+     +  E   L   +  
Sbjct: 368 LFKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTT 427

Query: 138 GSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGE 184
            S+D+         +        L G    R V+   +    ++            +D E
Sbjct: 428 ISLDTDEVVYGKGVKRAVPDKAVLLGHLA-RKVQVLLDSRPVMLDKLAEHEQADLYTDIE 486

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   +   G  ++ D + ++ E      ++L ++I ++   +  +      L + 
Sbjct: 487 LPLANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVF-NINSPKQLGVI 545

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAV 299
           LF    + L    +       +   + +LA    +         I KL +     L + +
Sbjct: 546 LFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI 605

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
            +DGR+         ++TGR S      QN+P +                          
Sbjct: 606 MADGRIHTRY-LQDLTQTGRLSSVDPNLQNIPIR------------------------LE 640

Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R     S+    L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F 
Sbjct: 641 QGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFG 700

Query: 419 TP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
               + V+   R   K +   + Y     G +             +  + +       + 
Sbjct: 701 IEKPEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYM 760

Query: 474 DW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +                          S    ++      A+   + G+A +++K A   
Sbjct: 761 ERVVREAKDKGYVETLFKRRRQLPDINSRQFNVRSFAERTAINSPIQGSAADILKIAMIN 820

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             Q ++              +    +    V  VP   +   K  V   + S+  L   
Sbjct: 821 LDQALV--------AGGFETKMLLQVHDEIVLEVPNHELAAVKALVKETMESAVSLAVP 871


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V    +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
          Length = 877

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
          Length = 580

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      + +L DET      +S    +  K   GI++    +    + A        
Sbjct: 53  ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163
           + +   A    ++    E  +   A + KG+  + P +   A H+       W+L   + 
Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E  R    RL  L + E+ L  +   +   G ++D   + ++ + +A++   +++ 
Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L + LF    + ++  ++    T   +L          + IL+
Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + V    +   T+     ++TGR S      QN+P +       
Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S    L+  AD + IE RVLA IA +D  +
Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF    DI+  T    F    D+V+   R   K +   + Y     G A+         
Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                          S +  ++      A+
Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++KKA    +
Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552
           TA ++ + +       + +  K +  G    + + G           A            
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             KR +  ++  +++  Y         YL   TS+    R++  ++  N  +Q  + DI+
Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508

Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            + M +        +    ++L VHDE++ E P      +  LC L
Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 SQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 160/490 (32%), Gaps = 64/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +   L  + V     +   + +   + LG+ +   +     +L     L +S  +  L
Sbjct: 369 KQIKNLLESDEVEVDLFDGKRQYVGLNR-LGVTL--SKINFDLLLVSYL-LDNSENSNDL 424

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
            L   +H     E    I  + KG+  + P D      H+          K  +    E 
Sbjct: 425 GLLAQQHEYYDVESDEQI--YGKGAKHAVPEDKEVLFEHLVRKVKAINNLKEKLFNELEE 482

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L   +  ER L ++   +   G ++D + +  +Q  + +   +L+++I         
Sbjct: 483 NQQLDLYTKIERPLSIILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF- 541

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF    + ++  ++    T   +L          D IL     +     
Sbjct: 542 NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQST 601

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L + VS  DG+          + TGR S      QN+P                  
Sbjct: 602 YIEGLLKVVSKKDGKAHTRYT-QTLTSTGRLSSVDPNLQNIP------------------ 642

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S  G ++  +D + IE RVLA I+ +    +AF  G DI
Sbjct: 643 ------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDI 696

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + FN    D+V+   R   K +   + Y     G ++            +  + 
Sbjct: 697 HASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYL 756

Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                         +S +  ++      A+   + G+A
Sbjct: 757 DTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSA 816

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 817 ADIIKVAMIN 826


>gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 160/490 (32%), Gaps = 64/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +   L  + V     +   + +   + LG+ +   +     +L     L +S  +  L
Sbjct: 369 KQIKNLLESDEVEVDLFDGKRQYVGLNR-LGVTL--SKINFDLLLVSYL-LDNSENSNDL 424

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
            L   +H     E    I  + KG+  + P D      H+          K  +    E 
Sbjct: 425 GLLAQQHEYYDVESDEQI--YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEE 482

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L   +  ER L ++   +   G ++D + +  +Q  + +   +L+++I         
Sbjct: 483 NQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF- 541

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF    + ++  ++    T   +L          D IL     +     
Sbjct: 542 NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQST 601

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L + VS  DG+          + TGR S      QN+P                  
Sbjct: 602 YIEGLLKVVSKKDGKAHTRYT-QTLTSTGRLSSVDPNLQNIP------------------ 642

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S  G ++  +D + IE RVLA I+ +    +AF  G DI
Sbjct: 643 ------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDI 696

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + FN    D+V+   R   K +   + Y     G ++            +  + 
Sbjct: 697 HASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYL 756

Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                         +S +  ++      A+   + G+A
Sbjct: 757 DTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSA 816

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 817 ADIIKVAMIN 826


>gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13]
          Length = 237

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T   H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  +
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/576 (14%), Positives = 182/576 (31%), Gaps = 84/576 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           L  +AW ++  +++   + S + ++L + + ++ +        F+R  +    LG+D+P+
Sbjct: 357 LIGFAWGNQG-QIYASADISLLTTELFKKVLEQPIATY----DFKRSKVLLSHLGLDLPA 411

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA                     +    +       + KG   + P      
Sbjct: 412 ASY--DARLANYLLSTVEDNEMATLARLYTTIPLDTD----EVVYGKGVKRAVPDKAVLL 465

Query: 151 NHVQAWQLFGEYCKRDVEATR---ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            H+       +                ++    +D E  L  +   +   G  ++ D + 
Sbjct: 466 GHL---ARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIEGIAVNQDSLQ 522

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           ++ E      ++L ++I ++   +  +      L + LF    + L    +       + 
Sbjct: 523 EMAEQNKVVIEELTQEIYEMAGEVF-NINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAV 581

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA    +         I KL +     L + + +DGR+         ++TGR S 
Sbjct: 582 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRY-LQDLTQTGRLSS 640

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P +                              +R     S+    L+ +D 
Sbjct: 641 VDPNLQNIPIR------------------------LEQGRLIRKAFTPSHDDAVLLSSDY 676

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440
           + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + 
Sbjct: 677 SQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIV 736

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G +             +  + +       + +                      
Sbjct: 737 YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQL 796

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
               S    ++      A+   + G+A +++K A     Q ++              +  
Sbjct: 797 PDINSRQFNLRSFAERTAINSPIQGSAADILKIAMINLDQALV--------AGGFETKML 848

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             +    V  VP   +   K  V   + S+  L   
Sbjct: 849 LQVHDEIVLEVPSHELAAVKELVKETMESAVNLAVP 884


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 135/405 (33%), Gaps = 61/405 (15%)

Query: 167 VEATRELFK--RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           VE T+ L +       ++ E  L  +   +   G  +++D +   QE+ A      ++  
Sbjct: 447 VELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFANHVAAEEKAA 506

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L      +      L+  LF    +     ++    +         +           
Sbjct: 507 RELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLAINHPHPFLDHLL 566

Query: 285 SGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +     KL T    L + V  DGR+  T     AS TGR S      QN+P +  S    
Sbjct: 567 AHREYQKLKTTLEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTES---- 621

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399
                                  +RS  I   G   L+ AD + IE RV+A ++ +   I
Sbjct: 622 --------------------GRTIRSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLI 661

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +A+  GED++    ++ F+ P+DKV+ E R   K M   L Y     G ++     A   
Sbjct: 662 EAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLVYGLSAFGLSQQLSIPAGEA 721

Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494
              +  +         +                         +  S +   ++     A+
Sbjct: 722 KKTMDAYFDRFGGVKKYLADVVEQARKDGYTATVFGRRRYLPELISDNRLARENAERAAL 781

Query: 495 KDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEG 535
              + GTA +++K A     Q +     ++   + +     V  G
Sbjct: 782 NAPIQGTAADIIKVAMIRVDQALEGFKSRVLLQVHDELVVEVAPG 826



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 602 VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    +   G+   ++L VHDE+V E        V  +  
Sbjct: 785 IQGTAADIIKVAMIRVDQALEGFKSRVLLQVHDELVVEVAPGELNKVQEIVE 836


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 447 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 506

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 507 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 566 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 622

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 623 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 660

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 661 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 720

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 721 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 780

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 781 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 832

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 833 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 870


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +     ++    +  K   G+DI    +    ++A        L  A  
Sbjct: 356 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPGLEVVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFEDLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +++KKA 
Sbjct: 794 NTPIQGSAADIIKKAM 809


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/400 (16%), Positives = 136/400 (34%), Gaps = 59/400 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E  L  +   +   G  +D+D++   ++   ++  + +    +L      +     
Sbjct: 480 YTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERAARELAGDDKLNLNSPK 539

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTL 295
            L+  LF    +     ++    +                     +     K    L  L
Sbjct: 540 QLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLDHLLAHREYQKMKTTLEGL 599

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + V  DGR+  T     AS TGR S      QN+P +  +                   
Sbjct: 600 IKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA------------------- 639

Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +RS  I  +G  +L+ AD + IE RV+A ++ +   I+A+  GED++    +
Sbjct: 640 -----GRQIRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGS 694

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F+ P+D+V+ E R   K M   L Y     G ++     A      ++ + +      
Sbjct: 695 RVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFERFGGVK 754

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + D    ++                      +   ++     A+   + GTA +++K A
Sbjct: 755 KYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAADIIKVA 814

Query: 510 WRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545
                + +     ++   + +     V  G +   R +  
Sbjct: 815 MIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 854



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 602 VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    +   G    ++L VHDE+V E        V  +  
Sbjct: 803 IQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 854


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 576

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 577 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 630

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 631 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 671

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 731

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 791

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 792 AMNTPIQGTAADIIKKAM 809



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862

Query: 663 LKAE 666
           LK +
Sbjct: 863 LKVD 866


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/536 (15%), Positives = 165/536 (30%), Gaps = 90/536 (16%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-- 91
            +A  +    ++     +   SDLL Y   +       +        K+ L +       
Sbjct: 342 GFALYNGKQAVYISLVDAKKDSDLLAYFSSDMPHKYGFDV-------KRNLHLAENEGLT 394

Query: 92  -RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +    +LA +  + SSL              K+ E            +   P      
Sbjct: 395 LNFHDDMMLAASL-VDSSL----------TTTAKIIERYGFENTVSYEDVYGKPTKPNLI 443

Query: 151 NHVQAWQLFGEYCKRD-----VEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDL 203
              +   ++     R+      E T +L +  +     + E  L  +   +   G R D+
Sbjct: 444 IDEEKQCMYACAFARNIFRLYAEITPKLQEYKMEKLYYEMEMPLTTVLYHMEREGIRCDI 503

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
           D++ ++      +  +  ++I  L      +      L   LF   G+            
Sbjct: 504 DILDRIATETMAKISEAQKEIYVLAAKEF-NINSPKQLAEVLFDDLGLPTGKKRSTAAGE 562

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +      + +   ++  R   S         L + +  DG++        A++TGR S  
Sbjct: 563 LEKLQGKSPIIDYILEYR-KLSKIYSTYAEGLKKYIQQDGKIHTIYN-QSATQTGRLSSS 620

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+                                 +R   +  NG  L+ +D   
Sbjct: 621 EPNLQNIS------------------------VRDEQGKEIRKAFLPENGCVLISSDYHQ 656

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R+LA +A E   I+AF  G DI+  T    F+ P D+++ + R   K +   + Y  
Sbjct: 657 IELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVNFGIVYGI 716

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G ++            ++++         + D                       + 
Sbjct: 717 SDFGLSEQLGVSRYEAHDFIERYYAAYPKIRIYMDQIVKDCEEKGYVETLCGRRREIPEI 776

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
              +   ++     A+   + G+A +L+K A           + K + +LQ+  +L
Sbjct: 777 HDKNHATREFGKRAAMNAPIQGSAADLIKLAMIHIDQMMKDAKVKSKMILQVHDEL 832


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 99/584 (16%), Positives = 188/584 (32%), Gaps = 111/584 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ-------SA 52
               ID ET S             +     L   +    +        +         S 
Sbjct: 318 KTFSIDTETTS------------LDPFEAKLVGISISTMEGKAYYIPVSHFGAKNISKSL 365

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           +   L Q L+++    V  N  F+  +FK    +          +++A     P   +  
Sbjct: 366 IDKFLKQILQEKDYNIVGQNLKFDYEIFK---SMGFSPNVPHFDTMIAAYLLNPDEKRFN 422

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L+      KM         F +   ++ P      ++V   +   EY   D + T  
Sbjct: 423 LEELSLKYLGYKMIS-------FDELVNENVPLFGNDFSYVPL-ERAVEYSCEDADVTYR 474

Query: 173 LFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           +F++L              + E  L  +   +   G   D + + +L +   ++   + E
Sbjct: 475 IFRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMDGIKE 534

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            + ++      +   +  +   LF    I     +  T K   +   + +L+K+  + +L
Sbjct: 535 KVFEIAGETF-NLNSSTQVAYILFEKLNIAPYKKT-ATGKFSTNAEVLEELSKEHEIAKL 592

Query: 283 ASSGSAILKLN-TLSEAVS-----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                   KL  T  +++         R+  T    G + TGR S      QNLP +   
Sbjct: 593 LLEYRKYQKLKSTYIDSIPLSINRKTNRVHTTFHQTG-TSTGRLSSSNPNLQNLPTRS-- 649

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395
                                      +R  +        ++ AD + IE RVLA ++ +
Sbjct: 650 ----------------------EEGKEIRKAVRPQRQDWWILGADYSQIELRVLAHVSKD 687

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
           +  +KAF +  DI+  T AK F      VS++ R +GK++  A+ Y     G +K     
Sbjct: 688 ENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAIIYGVSPYGLSKRIGLS 747

Query: 452 ASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYP 490
            S     +  + +  K    +                         Q  S +     +  
Sbjct: 748 VSETKKIIDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQLRSKNGNRVQEGE 807

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
             AV   + GTA +++K A    H          + +LQ+  +L
Sbjct: 808 RIAVNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDEL 851



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 543 VANVPRLVMRRHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
              +     R +K        +   + ++   + + G   Y+    S+       G ++ 
Sbjct: 751 TKKIIDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQLRSKNGNRVQEGERIA 810

Query: 599 ENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
            N  +Q  + DI+   M N             ++L VHDE+V E PD     V  +  
Sbjct: 811 VNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDELVFEVPDNELEFVKDIVK 868


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/520 (15%), Positives = 169/520 (32%), Gaps = 93/520 (17%)

Query: 37  WDDEPVKL-WDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
            D + V +  D  +        +  +L D       H++           G+++      
Sbjct: 341 LDGDHVGVEMDLADLDPKDEKAIKTWLADPASPKWFHDAKRAFHALA-PQGLELDGVE-H 398

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
             S+ A        +      L       + + G+ L A            D  +    +
Sbjct: 399 DASIAAYLLRPDVRISGLGDIL-------QSQAGRELPANADGFDRAQAVRDLVKVLTEK 451

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                 E    D+E                  L L+   +   G  +D + + +L    A
Sbjct: 452 LAAAKQEELYYDLEV----------------PLCLILARMEHEGIAVDGEHLQELSNDYA 495

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------GTLKSI 264
            +  +      +L      +      L+  LF    +     ++            L + 
Sbjct: 496 AKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQ 555

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            +H  +  L       ++ ++      ++ L EA+  DGR+  T    GA+ TGR S   
Sbjct: 556 TNHPFLAHLMAHREYQKMKTT------IDGLIEAIGDDGRIHTTFNQKGAA-TGRLSSSD 608

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P +                          A   +R+   A  G+ L+ AD + I
Sbjct: 609 PNLQNIPVRT------------------------DAGRRIRAAFHAGWGETLLTADYSQI 644

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E RV+A ++ ++  I+A+ +GED++    ++ F+ P+D+V+ E R   K +   L Y   
Sbjct: 645 EMRVMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVYGLS 704

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479
             G ++     A    + ++ +         + D                       +  
Sbjct: 705 AFGLSQQLGISAGEAKVIMENYFTRFGGVKRYLDEVVHQAKETGYTETLYGRRRYLPELN 764

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           S +   ++     A+   + GTA +++K A     + + +
Sbjct: 765 SSNRVARENAERAALNAPIQGTAADIIKLAMLRVDRAIRE 804



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    +          ++L VHDE+V E        V  L  
Sbjct: 783 IQGTAADIIKLAMLRVDRAIREQNLKSRVLLQVHDELVVEVAKGELDKVSELVQ 836


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/500 (16%), Positives = 156/500 (31%), Gaps = 73/500 (14%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D  +  A  +++  +L DE V    ++     ++        +          LA     
Sbjct: 357 DVLQSEAA-AEVRAWLADEQVPKRGYDLHRADLVL---FWHGVAFAGAEHDVQLAAYLLD 412

Query: 106 PSSLKNACLALNFSEHLTK---MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
           P+        L     L +    +E     A+F     D       R             
Sbjct: 413 PTESDQTISGLAAKYQLPQVPGDDEVYGKGAKFKVPEPDVLSRHLARKADALL--RILPL 470

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            + D+ A  E+ K    L   E  L  +   +  +G  ++ + + +L      +  KL  
Sbjct: 471 QREDL-AKYEMEKLFYEL---EMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVA 526

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            I ++      +   T  L   LF   G+ ++  ++           + +LA    + + 
Sbjct: 527 RIYEIAGQEF-NINSTKQLGEILFDKLGLPVIKKTKTG--YSTDAEVLEKLAPYHEIVQF 583

Query: 283 ASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                 + KL +      L E     G++    +   A+ TGR S      QN+P +   
Sbjct: 584 ILEYRQLAKLQSTYVEGLLKEISPKTGKVHTYFRQTIAA-TGRLSSQYPNLQNIPIR--- 639

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395
                                      +R   +    G  ++ AD + IE RVLA I+G+
Sbjct: 640 ---------------------LEEGRKIRKVFVPSEEGWFILSADYSQIELRVLAHISGD 678

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
               +AF +  DI+  T    F    D+V    R   K +   + Y     G ++     
Sbjct: 679 PGLQEAFLHDMDIHTKTAMDVFGVGPDQVDANMRRSAKAVNFGIVYGISDYGLSQNLNIT 738

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                  ++Q+    +    + D                       +  + +  ++    
Sbjct: 739 RKEAARFIEQYFNAFQGVRRYMDEIVKAAKRDGYVKTLLERRRYLPEINASNFNLRSFAE 798

Query: 491 EFAVKDKLIGTACELVKKAW 510
             A+   + GTA +++K A 
Sbjct: 799 RTAMNTPIQGTAADIIKLAM 818



 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
             + G   + V    R      + G++     +++             A R         
Sbjct: 697 MDVFGVGPDQVDANMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAARFIEQYFNAF 753

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
           +  +R +  ++ +++R  Y     +   YL    +     R++  +   N  +Q  + DI
Sbjct: 754 QGVRRYMDEIVKAAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADI 813

Query: 610 LCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +  +       ++L VHDE+V E P      +  L    M K       +P
Sbjct: 814 IKLAMVRMDEELHKHGLKSRMLLQVHDELVFEVPPEELEFMSKLVPETMGKALE--LSVP 871

Query: 663 LKAE 666
           LKAE
Sbjct: 872 LKAE 875


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 173/540 (32%), Gaps = 95/540 (17%)

Query: 45  WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            D T+Q       L+  L D       H++  E        G  +        + LA   
Sbjct: 386 IDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKLN---GSGLVLAGVEQDTALAAYL 442

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             P  L+   LA     H+              + + D+P   C +A       L  E  
Sbjct: 443 LRPD-LRTGDLADVVQRHVGH------------EITADAPGAVCAQATAELVAALTPELA 489

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +       EL+       D E  L  +   +   G  +D   +  L +    + +    +
Sbjct: 490 EIGA---MELY------LDLEVPLATVLAKMEATGISVDAASLRDLSDEYGVQIEAEIAE 540

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL- 282
              +      +      L+  LF    ++L    +       +   + +LA       L 
Sbjct: 541 ARTIAGDDTLNLSSPKQLQKVLFET--LELPKTKKTKTGYSTAAGELEKLAASHPHPFLG 598

Query: 283 -ASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              +     K    ++ L EAV+ DGR+  T    GA+ TGR S      QN+P +  + 
Sbjct: 599 HLMAHREYQKMKSTIDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEA- 656

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGED 396
                                     +R       G   L+ AD + IE RV+A ++ + 
Sbjct: 657 -----------------------GRRIRGAFRVGTGYATLITADYSQIEMRVMAHLSQDP 693

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+A+  GED++    +K F+ P++ V+ E R   K M   L Y     G ++  +  A
Sbjct: 694 GLIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYGLVYGLSAFGLSQQLRISA 753

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEFA------------ 493
                 +  + +       + D   A +            +   PE              
Sbjct: 754 GEAKQIMDNYFERFGGVKRYLDEVVAHAKETGYTETLYGRRRYLPELNSSNRVAAEAAGR 813

Query: 494 --VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
             +   + GTA +++K+A               + +LQ+  +L        Q+  +   R
Sbjct: 814 AALNAPIQGTAADIIKRAMLRVDAEFTRRDLASRVLLQVHDELVVEVVDGEQDVVTEILR 873



 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M               ++L VHDE+V E  D     V  +    M
Sbjct: 820 IQGTAADIIKRAMLRVDAEFTRRDLASRVLLQVHDELVVEVVDGEQDVVTEILREQM 876


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L D  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 370 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L D  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 370 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKRKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L D  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 370 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 102/586 (17%), Positives = 191/586 (32%), Gaps = 104/586 (17%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-------RWI--CTSVL 99
           +++ +   L   L D T   + HN  ++ ++ ++  G+++           W    + + 
Sbjct: 422 DEATVLGALRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIA 480

Query: 100 ARTNGLP-SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       SS     LA+              L  R    S         +         
Sbjct: 481 SYLVDASRSSHSMDALAMAL------------LERRNIPISELIGTGKKQKTFDTVPLDR 528

Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T +L +RL+P              E  L  +   +   G R+D D + +
Sbjct: 529 ATPYAAEDADVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDR 588

Query: 209 LQELIAQERKKLDEDIVKLTDGII---RSSRQTYALRMYLFLI-------TGIDLVDMSE 258
            +  I    K L   I     G +     +     L   LF          G+ ++   +
Sbjct: 589 QRGRIEGRVKDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGK 648

Query: 259 -------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310
                    L+ +   +++     DLIL     +      L  L E +     R+  +  
Sbjct: 649 TGPSTDAEVLEKLSQDASVKTPIPDLILEYRQLTKLVNTYLVNLVEEIDPRTKRIHASFN 708

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A+ TGR S      QN+P +                              +R   +A
Sbjct: 709 QTVAA-TGRLSSSDPNLQNIPIRT------------------------ELGREIRKAFVA 743

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  LV AD + IE R+LA ++ +   I+AF  G+DI+    A+  + P+ +VS+EQR 
Sbjct: 744 EPGHLLVAADYSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRN 803

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             K++   + Y     G A+      S  G  +  + +     +TF +   A++H     
Sbjct: 804 GAKMVNFGIVYGVTAFGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAHAQGYV 863

Query: 487 DQ---------------------YPEFAVKDKLIGTACELVKKAWRAKHQG---VLQLWK 522
           +                          A+   + G+A +L+K A    H+        W+
Sbjct: 864 ETMMKRRRPIPDIDSRDQNRRALAERMAINSVVQGSAADLIKIAMVDLHRRLSPRAAAWR 923

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           +        V+    I    V   P+      +  +   + ++  L
Sbjct: 924 EGAGPEIEGVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAMAL 969



 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 20/87 (22%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----------------GYDIVLTVHDEIVSETPDTP 640
             ++VQ  + D++   M +  +                  G  ++L +HDE+V E P   
Sbjct: 892 INSVVQGSAADLIKIAMVDLHRRLSPRAAAWREGAGPEIEGVRMLLQIHDELVFEAPKDR 951

Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAE 666
             +V   + + M      A  +PL A+
Sbjct: 952 AEAVRDLIVARMEAAM--ALDVPLVAD 976


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 447 VETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 506

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 507 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 566 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 622

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 623 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 660

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 661 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 720

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 721 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 780

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 781 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 832

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 833 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 870


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 159/498 (31%), Gaps = 69/498 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNG 104
           D  +       +  +L D  +    ++    RI       GI      +     LA    
Sbjct: 357 DVLKSEEA-EPVRAWLADSEIPKRGYDLH--RIDLALHWQGIAFAGAAF--DVHLAAYLL 411

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P+        L     L  ++  + +   F KG+    P     + H+    L      
Sbjct: 412 DPTESNQTLSGLASKYGLAYLQADEDV---FGKGAKYKVPDVDKLSEHMARKCLAVSELV 468

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              E      + L    D E  L  +   +  +G  ++ + + +L      +  KL ++I
Sbjct: 469 PIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEI 528

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++      +      L   LF+   + ++  ++           + +LA    + RL  
Sbjct: 529 YEIAGTEF-NLNSPKQLGEILFVKLELPVIKKTKTG--YSTDAEVLEKLAPYHDIVRLIL 585

Query: 285 SGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL +      L E  S  G++  T      + TGR S      QN+P +     
Sbjct: 586 QYRTLAKLQSTYVEGLLKEISSVTGKVH-TYYRQTIAATGRLSSQYPNLQNIPIR----- 639

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   + S  G  ++ AD + IE RVLA I+ ++ 
Sbjct: 640 -------------------LEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDER 680

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AF +  DI+  T    F   +D+V    R   K +   + Y     G ++       
Sbjct: 681 LKEAFVHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRK 740

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                + Q+ +  +    + D                       +  + +  ++      
Sbjct: 741 EAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERT 800

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++K A 
Sbjct: 801 AMNTPIQGTAADIIKLAM 818



 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 16/172 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
             + G   + V    R      + G++     +++             A    +    V 
Sbjct: 697 MDVFGVGMDEVDSNMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAAAFIDQYFEVF 753

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
           +  +R + +++  +++  Y     +   YL    +     R++  +   N  +Q  + DI
Sbjct: 754 QGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADI 813

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +   M +  K  +       ++L VHDE+V E P+     +  L   +M++ 
Sbjct: 814 IKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA 865


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/491 (16%), Positives = 164/491 (33%), Gaps = 72/491 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112
                +L +  +     ++    +  K   G+DI    +    ++A     P+       
Sbjct: 370 DAFKAWLANAEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYLLDPADTDKDFR 426

Query: 113 CLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDVEA 169
            +A     H  K  EE     A+     +D       R  HV     Q F E  K++   
Sbjct: 427 AVAKMKETHAVKSDEEVYGKGAKRAVPELDVVAEHVARKVHVLYDVKQTFIEELKKN--E 484

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             ELF  L      E  L  +   +  +G ++D + +  + E +A   K+++++I KL  
Sbjct: 485 QYELFTEL------ELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNRLASSG 286
               +      L + LF    + ++  ++    +     +      ++I   L+      
Sbjct: 539 TEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQLGK 597

Query: 287 SAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                +  L + V  D  ++         ++TGR S      QN+P +            
Sbjct: 598 LNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------------ 644

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +    G  +  AD + IE RVLA IA +   ++AF +
Sbjct: 645 ------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQH 692

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
             DI+  T    F    D+V+   R   K +   + Y     G ++            ++
Sbjct: 693 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++ ++      + D                       +  S +  ++      A+   + 
Sbjct: 753 KYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 500 GTACELVKKAW 510
           G+A +++KKA 
Sbjct: 813 GSAADIIKKAM 823


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 134/398 (33%), Gaps = 66/398 (16%)

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRID 202
           V   +   E+  R      EL                 +D E  L ++   +   G  +D
Sbjct: 436 VPEEEKLAEHLARKANVVYELKSTCEEALKENDQYQLFTDLELPLAIILADMEYTGVGVD 495

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +D + +++  +A+   ++++ I +L      +      L + LF    + ++  ++    
Sbjct: 496 VDRLKEMKSELAERLDEMEKKIYELAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYS 554

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          D IL+           +  L + +  D  ++         ++TG
Sbjct: 555 TSADVLEKLQSKHEIIDHILHYRQLGKLQSTYIEGLLKVIHEDSNKVHTRFN-QALTQTG 613

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV- 377
           R S      QN+P +                              +R   I S    L+ 
Sbjct: 614 RLSSTDPNLQNIPIR------------------------LEEGRKIRQAFIPSEKNWLMF 649

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IAG++  I AF  G DI+  T    F+   D V+   R   K +  
Sbjct: 650 AADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNF 709

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
            + Y     G ++         G  +Q++  +      + D                   
Sbjct: 710 GIVYGISDFGLSQSLGITRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQNGFVKTLLQRR 769

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
               +  S +  ++      A+   + G+A +++KKA 
Sbjct: 770 RYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAM 807


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 807 ADILKIAMIE 816


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/495 (14%), Positives = 171/495 (34%), Gaps = 69/495 (13%)

Query: 53  MPSD-------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           +P +         ++  DE+      ++    +   +  GI++    +    +LA     
Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIELKGAEF--DVLLAAYIIN 405

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P    +   ++     L  +   +A+   + KG+  + P +   A+H+          + 
Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV---YGKGAKQAVPDEKELADHLARKAKAISLLRE 462

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +    E  ++L      E  L  +   +   G ++D+D + K+ E ++ +  + ++ I 
Sbjct: 463 KLLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIH 522

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           +       +      L + LF   G+ +V  ++    T   +L       +  + IL+  
Sbjct: 523 ESAGETF-NINSPKQLGVILFEKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYR 581

Query: 283 ASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                    +  L + +  D  ++         ++TGR S      QN+P +        
Sbjct: 582 QIGKLQSTYVEGLLKVIKKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------- 632

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   + S  G  +  AD + IE RVLA I+ +   I+
Sbjct: 633 ----------------LEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIE 676

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF N  D++  T    F+   ++V+   R   K +   + Y     G ++          
Sbjct: 677 AFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAA 736

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495
             ++++  + +    + +    E+                      +  ++      A+ 
Sbjct: 737 AFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMN 796

Query: 496 DKLIGTACELVKKAW 510
             + G+A +++KKA 
Sbjct: 797 TPIQGSAADIIKKAM 811



 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++  +    R  +  + V    +  V               +    Y+   TS+    
Sbjct: 730 ITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRR---RYIPELTSRNFNL 786

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
           R++  +   N  +Q  + DI+ + M +             ++L VHDE++ E P+     
Sbjct: 787 RSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKV 846

Query: 644 VGTLC-SLM 651
           +  L   +M
Sbjct: 847 LEKLVPEVM 855


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 159/498 (31%), Gaps = 69/498 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNG 104
           D  +       +  +L D  +    ++    RI       GI      +     LA    
Sbjct: 357 DVLKSEEA-EPVRAWLADSEIPKRGYDLH--RIDLALHWQGIAFAGAAF--DVHLAAYLL 411

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P+        L     L  ++  + +   F KG+    P     + H+    L      
Sbjct: 412 DPTESNQTLSGLASKYGLAYLQADEDV---FGKGAKYKVPDVEKLSEHMARKCLAVSELV 468

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              E      + L    D E  L  +   +  +G  ++ + + +L      +  KL ++I
Sbjct: 469 PIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEI 528

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++      +      L   LF+   + ++  ++           + +LA    + RL  
Sbjct: 529 YEIAGTEF-NLNSPKQLGEILFVKLELPVIKKTKTG--YSTDAEVLEKLAPYHDIVRLIL 585

Query: 285 SGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL +      L E  S  G++  T      + TGR S      QN+P +     
Sbjct: 586 QYRTLAKLQSTYVEGLLKEISSVTGKVH-TYYRQTIAATGRLSSQYPNLQNIPIR----- 639

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   + S  G  ++ AD + IE RVLA I+ ++ 
Sbjct: 640 -------------------LEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDER 680

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AF +  DI+  T    F   +D+V    R   K +   + Y     G ++       
Sbjct: 681 LKEAFVHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRK 740

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                + Q+ +  +    + D                       +  + +  ++      
Sbjct: 741 EAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERT 800

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++K A 
Sbjct: 801 AMNTPIQGTAADIIKLAM 818



 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 16/172 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
             + G   + V    R      + G++     +++             A    +    V 
Sbjct: 697 MDVFGVGMDEVDSNMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAAAFIDQYFEVF 753

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
           +  +R + +++  +++  Y     +   YL    +     R++  +   N  +Q  + DI
Sbjct: 754 QGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADI 813

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +   M +  K  +       ++L VHDE+V E P+     +  L   +M++ 
Sbjct: 814 IKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA 865


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 143/406 (35%), Gaps = 71/406 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E  L  +   + + G  +D+D++    +    +  +++E+  +L D    +     
Sbjct: 472 YADLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLSSPK 531

Query: 240 ALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            L + LF    +     ++            L     H  + +L       ++ S+    
Sbjct: 532 QLSVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHREYQKMKST---- 587

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L +AV+ +GR+  T +    + TGR S      QN+P +  +             
Sbjct: 588 --IEGLIKAVADNGRIHTTFK-QTVASTGRLSSTDPNLQNIPVRTEA------------- 631

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +RS      G + L+ AD + IE RV+A ++ +   I+A+  GED+
Sbjct: 632 -----------GRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDL 680

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++ F+ PID+V+ E R   K M   L Y     G +      A      ++ + +
Sbjct: 681 HNFVGSRVFDVPIDQVTPELRRRVKAMSYGLVYGLSAYGLSNQLSISAGEAKSIMESYFE 740

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
                 ++ D    ++                          ++     A+   + G+A 
Sbjct: 741 RFGGVKSYLDNVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQGSAA 800

Query: 504 ELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545
           +++K A     + +     ++   + +     +  G     R +  
Sbjct: 801 DIIKVAMIRVDRALESFNSRVLLQVHDELVVEIAPGELAEVREIVE 846



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 94/271 (34%), Gaps = 24/271 (8%)

Query: 393 AGEDWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGG 444
           +  +  IKA A+   I+ T      +  +  +T  +  +   R     K+   A     G
Sbjct: 586 STIEGLIKAVADNGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-AFTVGAG 644

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            +   T A +  ++++  +   + +   E + + E  H ++  +     V D  I     
Sbjct: 645 YECLLT-ADYSQIEMRVMAHLSQDSGLIEAYREGEDLHNFVGSR-----VFDVPIDQVTP 698

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +++  +A   G++             +  G    A+ +           K  +  V+  
Sbjct: 699 ELRRRVKAMSYGLVYGLSAYGLSNQLSISAG---EAKSIMESYFERFGGVKSYLDNVVEQ 755

Query: 565 SRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN-- 620
           +RR  Y+  V G   YL   TS     R    +   N  +Q  + DI+   M    +   
Sbjct: 756 ARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQGSAADIIKVAMIRVDRALE 815

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                ++L VHDE+V E        V  +  
Sbjct: 816 SFNSRVLLQVHDELVVEIAPGELAEVREIVE 846


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 807 ADILKIAMIE 816


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/495 (14%), Positives = 171/495 (34%), Gaps = 69/495 (13%)

Query: 53  MPSD-------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           +P +         ++  DE+      ++    +   +  GI++    +    +LA     
Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIELKGAEF--DVLLAAYIIN 405

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P    +   ++     L  +   +A+   + KG+  + P +   A+H+          + 
Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV---YGKGAKQAVPDEKELADHLARKAKAISLLRE 462

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +    E  ++L      E  L  +   +   G ++D+D + K+ E ++ +  + ++ I 
Sbjct: 463 KLLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIH 522

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           +       +      L + LF   G+ +V  ++    T   +L       +  + IL+  
Sbjct: 523 ESAGETF-NINSPKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYR 581

Query: 283 ASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                    +  L + +  D  ++         ++TGR S      QN+P +        
Sbjct: 582 QIGKLQSTYVEGLLKVIKKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------- 632

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   + S  G  +  AD + IE RVLA I+ +   I+
Sbjct: 633 ----------------LEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIE 676

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF N  D++  T    F+   ++V+   R   K +   + Y     G ++          
Sbjct: 677 AFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAA 736

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495
             ++++  + +    + +    E+                      +  ++      A+ 
Sbjct: 737 AFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMN 796

Query: 496 DKLIGTACELVKKAW 510
             + G+A +++KKA 
Sbjct: 797 TPIQGSAADIIKKAM 811



 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++  +    R  +  + V    +  V               +    Y+   TS+    
Sbjct: 730 ITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRR---RYIPELTSRNFNL 786

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
           R++  +   N  +Q  + DI+ + M +             ++L VHDE++ E P+     
Sbjct: 787 RSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKV 846

Query: 644 VGTLC-SLM 651
           +  L   +M
Sbjct: 847 LEKLVPEVM 855


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 807 ADILKIAMIE 816


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L D  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 356 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862

Query: 663 LKAE 666
           LK +
Sbjct: 863 LKVD 866


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 132/383 (34%), Gaps = 68/383 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L      +   G R++ + +    + +  +  +L++DI +       +      L
Sbjct: 473 DVEMPLVFTLYDMEVNGVRVEAEALKYYGDQLGAKIVELEKDIYEEAGENF-NINSPKQL 531

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
            + LF    I     ++       +   + +LA D  +           KL     + L+
Sbjct: 532 GVVLFENMKIPGGKKTKTG--YSTAADVLEKLAPDYPIIAKILEYRQYTKLKSTYADGLA 589

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  DGR+         + TGR S      QN+P +                       
Sbjct: 590 NYIREDGRIHSKFN-QTITATGRLSSTEPNLQNIPIR----------------------- 625

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   I  +G   V AD + IE RVLA  +G+   I+A+   +DI+  T ++ 
Sbjct: 626 -VELGRLIRKVFIPEDGFVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQV 684

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ P D+V+ +QR   K +   + Y     G ++            ++ +         F
Sbjct: 685 FHIPFDEVTDQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASKYIEDYFTAYPGIKIF 744

Query: 473 EDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAW- 510
            D     +  +                    +MQ  +    A+   + GTA +++K A  
Sbjct: 745 LDDTVKHAKEMGYVVTLFGRRRPVPELSSSNYMQRSFGERVAMNAPIQGTAADIIKIAMT 804

Query: 511 ---------RAKHQGVLQLWKDL 524
                    + K + VLQ+  +L
Sbjct: 805 GVGRRLKEQKMKSRLVLQVHDEL 827


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 157/475 (33%), Gaps = 68/475 (14%)

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE--HLTKMEEGKALIAR 134
           R+L      ++I        ++LA+     +            +  HL   EE       
Sbjct: 380 RVLLSH---LNIELPLVKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI------ 430

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           F KG+  + P D    +H+          K  + A     ++   LSD E  L  +   +
Sbjct: 431 FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKM 490

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  +  + + ++     ++   L  +I +L      +      L + LF    + + 
Sbjct: 491 EITGISVSQNTLEEIGAENEEKLALLTREIYELAGEEF-NINSPKQLGVILFEKLQLPVG 549

Query: 255 DMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
             ++      +  +   + ++ +   ++  R  +   +   +  L   ++ DG++     
Sbjct: 550 KKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQST-YVKGLIPQIADDGKIHTRYV 608

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 609 -QDLTQTGRLSSVDPNLQNIP------------------------VRLEEGRKIRKAFVP 643

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
           S    L+ +D + IE RVLA I+ ++  I AF +G DI+ +T  + F     + V+   R
Sbjct: 644 SQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAEDVTANDR 703

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K +   + Y     G A+            ++ + +      T+ +           
Sbjct: 704 RNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGF 763

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                          + +  ++      A+   + G+A +++K A     + + +
Sbjct: 764 VETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTE 818



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  K          ++L VHDEI+ + P      +  L    M + 
Sbjct: 797 IQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEA 856

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 857 IELA--VPLKVD 866


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/514 (17%), Positives = 163/514 (31%), Gaps = 77/514 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L DET    AH+     +         +  +   C + +A    +P   S     L L +
Sbjct: 380 LADETKPKAAHDVKGPLLAL---WEHGLDLRGLTCDTAIAAYLAMPGQRSFPIEELVLRY 436

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKR- 176
                        +         +  +D   A   +   L  +  +   +A  R L  R 
Sbjct: 437 LN---------RELRYETPADGQASLFDDVEAGMARDLALKAQAVRELADALERHLAARG 487

Query: 177 -LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
               +++ E  L  +   +   G   D      L+   +   K+  E    L      + 
Sbjct: 488 GTRLMTEVELPLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHALVGEQF-NL 546

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT- 294
                L+  LF+  G+      +    +            D  L  +        KL   
Sbjct: 547 GSPKQLQEILFVKLGLPKTKKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKLRAT 606

Query: 295 ---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
              L + ++ DGR+  T     A+ TGR S      QN+P +                  
Sbjct: 607 VEGLIKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIPIRT----------------- 648

Query: 352 TIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   I   G   L+ AD + IE R++A ++G++  I AF +G D + 
Sbjct: 649 -------AEGRRIRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQ 701

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
            T A+ F  P D+V+ E RA  K M   L Y     G A       +      +++ +  
Sbjct: 702 ATAARVFGLPPDQVTPELRARIKAMNYGLAYGLSDFGLAGQLNIPVAEARALKEEYFEEF 761

Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505
                + +    ++                      +   ++     A+   + G+A ++
Sbjct: 762 AGVREYLNRVVDQARKDGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADI 821

Query: 506 VKKAW---RAKHQGVL-QLWKDLTEGFACVVQEG 535
           +K A    R   +G+  ++   + +     V  G
Sbjct: 822 IKVAMLKVRKAMEGMRSRMLLQVHDELVFEVAPG 855


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 807 ADILKIAMIE 816


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L D  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLCNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + +                       +  S +  ++      
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805

Query: 493 AVKDKLIGTACELVKKAW 510
           A+   + GTA +++KKA 
Sbjct: 806 AMNTPIQGTAADIIKKAM 823



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
 gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
          Length = 895

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/500 (15%), Positives = 162/500 (32%), Gaps = 87/500 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   + +  ++    N   + +LFK+   + +  +      +LA               
Sbjct: 374 ELRSVIENAAIIKNVFNVKAQFVLFKR---LGMTLRGVEFDFLLAAY------------- 417

Query: 116 LNFSEHLTKMEEGKALIARFC-----------KGSIDSPPYDCTRAN-HVQAWQLFGEYC 163
               +      E   L  RF            KG+  + P + +R   H+          
Sbjct: 418 --LLDTTDNDNELSTLAQRFDFYVTPDEDIYGKGAKYAVPEETSRVLVHLAHKADVLMQL 475

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           ++   A  +  ++    ++ E  L  +   +  RG +ID   + +      +ER    ++
Sbjct: 476 EQPAFAALQDHEQTHLYTEIELPLAHVLADMEYRGIKIDQTRLRE-IGTDLEERIDTIKE 534

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
            + +  G + +      L + LF   G+ ++  ++    T   +L          D IL 
Sbjct: 535 AIFIEAGEVFNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVDHILQ 594

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      ++ L   V   D ++         ++TGR S      QN+P +  +   
Sbjct: 595 YRQLAKLKSTYVDGLLSVVHEKDSKIHTRF-LQTLTQTGRLSSIDPNLQNIPMRTEA--- 650

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R+  + S    ++  AD + IE RVLA + G+   
Sbjct: 651 ---------------------GRKIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNM 689

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            +AF NGEDI+  T    F    +  V    R   K +   + Y     G A       +
Sbjct: 690 QQAFLNGEDIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYGISDFGLANNLGISRA 749

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEF 492
                ++ + Q       +    +A++H                        ++      
Sbjct: 750 EAKRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKRRRYLPEIGSKNFNLRSFAERT 809

Query: 493 AVKDKLIGTACELVKKAWRA 512
           A+   + G+A +++K A   
Sbjct: 810 AMNSPIQGSAADIIKIAMIK 829



 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 8/119 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             A+R          +    +  I   +  +     +     YL    S+    R++  +
Sbjct: 749 AEAKRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKRRRYLPEIGSKNFNLRSFAER 808

Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
              N  +Q  + DI+   M               ++L VHDE++ E P      +  L 
Sbjct: 809 TAMNSPIQGSAADIIKIAMIKVADALQENGMQARMLLQVHDELIFEAPSDEIAELSELV 867


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/530 (17%), Positives = 181/530 (34%), Gaps = 103/530 (19%)

Query: 44  LWDRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           + D  + S+  S+     L   + D+ V  V H+         K     I  K +   + 
Sbjct: 348 IIDFKDISSKDSEEALKVLKNLMEDDNVKKVIHDGKNFVTFLNK---NQIEIKGFDFDTA 404

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKME---EGKALIARFCKGSIDSPPYDCTRANHVQA 155
           +A    L  S K+    L    H        EG  + A  C             +     
Sbjct: 405 IAAY--LIDSSKSKYEILELVNHYIGDNPNSEGSNIKAILC-------------SYLPMV 449

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           ++   E   +  E   +L+       + E  L  +  ++   G+ I+  ++ +LQ    +
Sbjct: 450 YEKLKENLHK--ENMDQLYY------EVEHPLIYVLSSMESIGFNINQGMLDELQTKFKK 501

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           E  K  ++I +L D    +      L   LF    + ++  ++       +   + +L  
Sbjct: 502 EIDKTQKEIYELADEEF-NISSPKQLGKILFEKLDLPVIKKTK--TGYSTNQEVLEKLMN 558

Query: 276 DLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              +         I K+N+     L   V  DGR+         + TGR S      QN+
Sbjct: 559 KHDIIPKIMYYRQITKINSTYVEGLKNVVDEDGRIHSNFN-QTVTTTGRLSSTEPNLQNI 617

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVL 389
           P +                              +R   I       LV  D + IE RVL
Sbjct: 618 PIKY------------------------EMGREIRKVFIPMEETDILVSCDYSQIELRVL 653

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----- 444
           A IAG++  I AF +  DI+  T ++ F  PI +V+   R+  K +   + Y        
Sbjct: 654 AHIAGDENMIDAFEHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVYGISAFSLA 713

Query: 445 ---------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLW 484
                    A+ + ++       ++++ +NV   +  + +            + +S +  
Sbjct: 714 EDLKITKKEAEEYMSIYLERYPKIKEYLENVVDEAKEKGYVLTILNRRRFIPEIKSSNKI 773

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           ++      A+   + G+A +++K A             K + +LQ+  +L
Sbjct: 774 VKALGDRLAMNAPIQGSAADIIKLAMVNVYNKLNEKELKSELILQVHDEL 823


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 136/394 (34%), Gaps = 65/394 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E  + L    D E  L  + + +   G R+D +L+  ++  +  E   L+ +I +LT 
Sbjct: 473 QLEERELLPLFDDVELPLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWELTG 532

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
                      L   LF   G+      +    T   +L          + I      + 
Sbjct: 533 EEFMI-GSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIERWRELTK 591

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            A   L+ L   +S  D RL  T     A+ TGR S      QN+P              
Sbjct: 592 LASTYLDALPLLISPEDHRLHTTFNQVTAA-TGRLSSTNPNLQNIP-------------- 636

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                  I  PLG     +R+C +A  G  L+ AD + +E RVLA IAGE+   + F  G
Sbjct: 637 -------IRTPLG---REIRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEIFRRG 686

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           ED++  T A       +++    R+  K++   + Y     G A   +         + +
Sbjct: 687 EDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVYGLSAFGLADRLQIPREEAQEFIDR 746

Query: 462 FSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           +     +   F                         +  + +  M+      AV   + G
Sbjct: 747 YLDGFPAVQAFIRTTIEQATDQGYVTTLMGRRRQIPELRARNYQMRQLGERLAVNTVIQG 806

Query: 501 TACELVKKAWRAKHQG----------VLQLWKDL 524
           TA +++K A     +           +LQ+  +L
Sbjct: 807 TAADVIKLAMVNADRALHASGLRTRLILQIHDEL 840


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/487 (16%), Positives = 159/487 (32%), Gaps = 73/487 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF-- 118
           + D  V  + H+         + LG +I     +     A  +GL         A +   
Sbjct: 435 MEDAGVRKIVHDLKGTAKAAGR-LGFEIAGADDVGLMSYALESGLTGHGLPELAARHLGN 493

Query: 119 --SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175
              +      +G+  +         + P     A+  ++ W +     +     T+ +++
Sbjct: 494 AAPDPDALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAPRLEG--TPTQAVYE 551

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L      E  +  +   +   G RID  ++ +L         +L+ +I +L  G  +  
Sbjct: 552 EL------ELPMVPVLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGGGPFQI- 604

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAI 289
                +   LF   G+     +    +     + + +LA         +L+   +S    
Sbjct: 605 GSPKQIGDVLFGRLGLPGGRRTPSG-QWATGATILEELAAAGHALPGRLLDWRRTSKLKS 663

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L  A      R+  T     A+ TGR S       N+P +               
Sbjct: 664 TYADALLSAADRGTDRVHTTFSL-AATTTGRLSSSDPGLHNIPIRT-------------- 708

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R+  +A+ G +++ AD + +E R+LA IA      +AFA G DI
Sbjct: 709 ----------EEGRRIRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAEGVDI 758

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T +  F  P+  V  E R   K +   + Y     G A             + ++ +
Sbjct: 759 HAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISAFGLADRLGIGRQEAAEFIARYFE 818

Query: 465 NVKSTSTF-EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTAC 503
                  + E  +     H +++  +                       AV   + GTA 
Sbjct: 819 RFPGIRDYVEGTKTFCREHGFVRTLFGRVCHYPGITSGNVSERMGVERQAVNAPIQGTAA 878

Query: 504 ELVKKAW 510
           +++++A 
Sbjct: 879 DIIRRAM 885


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/521 (18%), Positives = 167/521 (32%), Gaps = 73/521 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D     V H++    +      G+ +       T+ L+     P         L    
Sbjct: 374 LADPKRPKVLHDAKGPMLALAAW-GLPLAGLD-RDTA-LSAYLARPDQRSYDLADLTVRY 430

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              ++++G A   +     +D          H +   +       D E       RL  L
Sbjct: 431 LKRELKQGGADDGQLSLDGLDDRNAGEIEMLHAR--AVLDLAAALDDELEERGGTRL--L 486

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D E  L  L   +   G  +D D +  L+   A E +   E    +    I +      
Sbjct: 487 NDIELPLVDLLAKMEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVIGKEI-NLGSPKQ 545

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLS 296
           L+  LF   G+     ++    +         +  +            + +L      L 
Sbjct: 546 LQAVLFDELGMPKTKRTKTGYTTDADALQALYVKTEHPFLLHLLRHRDVSRLRQTIEGLL 605

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V+ DGR+  T     A+ TGR S      QN+P +                       
Sbjct: 606 KTVAGDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT---------------------- 642

Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +   G + L+ AD + IE R++A ++ +D  I+AF +G D +  T A+
Sbjct: 643 --EEGRRIREGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAAR 700

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P D V+ E RA  K M   L Y   A    +      S     + ++ Q       
Sbjct: 701 VFDVPADDVTVEMRAKIKAMNYGLAYGLSAFGLGQQLGIEPSEARGLMDEYFQTFGGIRD 760

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           +      E+                      +   ++     A+   + G+A +L+K A 
Sbjct: 761 YLGGVVEEARKAGFTETIWGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADLIKIAM 820

Query: 511 RAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541
               + +          LQ+  +L    A   QE   +  R
Sbjct: 821 LNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPLEVLVR 861



 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595
              AR + +         +  +  V+  +R+  +++ + G   YL   TS   + R    
Sbjct: 741 PSEARGLMDEYFQTFGGIRDYLGGVVEEARKAGFTETIWGRRRYLPDLTSDNRQRREMAE 800

Query: 596 KLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           ++  N  +Q  + D++   M N  +          ++L VHDE+V E        +  L 
Sbjct: 801 RMALNAPIQGSAADLIKIAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPLEVLV 860

Query: 649 -SLMTKNPSWAKGLPLK 664
              M      A  +PL 
Sbjct: 861 REQMGAAADLA--VPLD 875


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 135/408 (33%), Gaps = 65/408 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E    +    +  RG  +D   + +  + +    ++L E I K       +     
Sbjct: 480 YEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAGEEF-NINSPK 538

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    ++    ++    T   +L            IL     +       + L+
Sbjct: 539 QLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTYADGLA 598

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  D R+ G       + TGR S      QN+P +                       
Sbjct: 599 NYIGDDERIHGKFN-QTITATGRISSTEPNLQNIPAR----------------------- 634

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +   G   V AD + IE RVLA ++G+   I A+   +DI+  T ++ 
Sbjct: 635 -VELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQDIHARTASEV 693

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  PID+VS  QR   K +   + Y     G ++  K         + ++ +       +
Sbjct: 694 FGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKEY 753

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            +                       + +S +   ++     A+   + G+A +++K A  
Sbjct: 754 LNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAMI 813

Query: 512 AKHQG----------VLQLWKDLT-EGFACVVQEGGSISARRVANVPR 548
             +            +LQ+  +L  E     V+E   I  R + +  +
Sbjct: 814 RVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK 861



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
           +R +G ++  N  +Q  + DI+   M          K    ++L +HDE++ E  D+   
Sbjct: 787 QRNFGERVAMNSPIQGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSE-- 844

Query: 643 SVGTLCSLMTK 653
            V  +  ++T+
Sbjct: 845 -VEEVKGILTR 854


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/561 (14%), Positives = 171/561 (30%), Gaps = 92/561 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SL 109
           + + ++L D       H+    R        GI+     +     LA     P+    +L
Sbjct: 363 TPIREWLADPERKKRGHDLH--RTDLALHWHGIEFAGAEF--DVQLAGYLLDPTDANQTL 418

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK--RDV 167
                    S      E        F KG+    P     ++HV       E     +  
Sbjct: 419 SGLAAKYGLSSIRPDDEV-------FGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQA 471

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E  +    +L    + E  L  +   +  +G  ++++ +  L +    +   L  +I  +
Sbjct: 472 ELEKTEMHKLF--HELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSI 529

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L   LF   G+ ++  ++           + +LA    + +      
Sbjct: 530 AGVEF-NLNSPKQLGEILFDKLGLPVIKKTK--TGYSTDAEVLEKLAPYHDIVQNILQYR 586

Query: 288 AILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            I KL +      L E     G++    +   A+ TGR S      QN+P +        
Sbjct: 587 TIAKLQSTYVEGLLKEISEKTGKVHTYFRQTVAA-TGRLSSQFPNLQNIPIR-------- 637

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   + S  G  ++ AD + IE RVLA I+ ++   +
Sbjct: 638 ----------------LEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKE 681

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +  DI+  T +  F  P + V  + R   K +   + Y     G ++          
Sbjct: 682 AFVHDMDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAA 741

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             + Q+    +    + D                       +  + +   +      A+ 
Sbjct: 742 RFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNQRSFAERTAMN 801

Query: 496 DKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
             + GTA +++K A               ++   + +     V      + + +      
Sbjct: 802 TPIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKEL------ 855

Query: 550 VMRRHKRDVHIVLPSSRRLVY 570
           V    +  + + +P    + Y
Sbjct: 856 VPATMEAALKLAVPLKAEVSY 876



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 19/190 (10%)

Query: 498 LIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           + G   E V    R      + G++     +++             A R  +    V + 
Sbjct: 697 VFGVPAEAVDSDMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAARFIDQYFDVFQG 753

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDILC 611
            +R +  ++  ++R  Y     +   YL    +    +R++  +   N  +Q  + DI+ 
Sbjct: 754 VRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNQRSFAERTAMNTPIQGTAADIIK 813

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
             M               ++L VHDE+V E P     ++  L  + M      A  +PLK
Sbjct: 814 LAMVQMDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAALKLA--VPLK 871

Query: 665 AE-GYEAKRY 673
           AE  Y +  Y
Sbjct: 872 AEVSYGSNWY 881


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/581 (15%), Positives = 181/581 (31%), Gaps = 97/581 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A    +E   +     +  +         DE +  + HN   + I     L  DI  K 
Sbjct: 341 IAIKVQNEATCIIKIDCKEDILK-FKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID----------S 142
           +   S +A                  +   +  +        F +G  D           
Sbjct: 397 YTHDSEIAEYI--------------LNSTESNYDINNISNTYFSRGYKDLEELLGKGKKK 442

Query: 143 PPYDCTRANHVQAWQLFG---EYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRG 198
             +   + + +  +  F     Y  RDV+  +   + +  L  + E  L  +  ++   G
Sbjct: 443 IKFSDLKYDELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIG 502

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            R D  ++ ++   +  +   L+ DI +       +      L + LF   G  ++  ++
Sbjct: 503 IRTDNAILDEIGIDLDNKILNLENDIYEKAGEEF-NINSPKKLGLILFDKLGYPVLKKTK 561

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGA 314
               T   +L          D +L     +      +  L E ++ + G +         
Sbjct: 562 TGYSTNADVLEKLKKDGDIIDDVLEYRKLAKLKSTYVEGLKELINVATGHIHSHFN-QTI 620

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P +                              +R   ++S G 
Sbjct: 621 TSTGRISSTNPNLQNIPIKT------------------------DEGKLIRKAFLSSEGC 656

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE RVLA I+ ++  I AF N +DI+  T AK F    + V+   R+  K 
Sbjct: 657 VLVDADYSQIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKA 716

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE----------------- 473
           +   + Y     G ++            ++ +         +                  
Sbjct: 717 VNFGIVYGISDYGLSQNLNIPRKLAQEYIENYLLTYDGIKNYMTEEVKLAKKNGYVKTIL 776

Query: 474 ----DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQ 519
                  +  + +  ++      A+   + G+A +++K A             K + +LQ
Sbjct: 777 NRRRYIPELSAKNFNIRSFGERIAINTPIQGSAADIIKIAMVKVYRALKENNLKSKLILQ 836

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           +  +L         E      R +      ++ + K D+  
Sbjct: 837 IHDELIVDAREDEVETVKKLMRNIMENAVEMVVKLKVDMQT 877



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQA 604
               +      +V +   +       + +    Y+   +++    R++G ++  N  +Q 
Sbjct: 751 TYDGIKNYMTEEVKLAKKNGYVKTILNRR---RYIPELSAKNFNIRSFGERIAINTPIQG 807

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
            + DI+   M    +          ++L +HDE++ +  +    +V  L   +M
Sbjct: 808 SAADIIKIAMVKVYRALKENNLKSKLILQIHDELIVDAREDEVETVKKLMRNIM 861


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46]
          Length = 225

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 113/271 (41%), Gaps = 58/271 (21%)

Query: 416 AFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            FN P++ ++K    R  GKV ELALGYQGGA   K M                      
Sbjct: 1   MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------------------- 39

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A++  +     + +  +WR  +  ++  WK   E       
Sbjct: 40  -------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAI---- 76

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTAT-------- 584
              ++ +R+  +   L     K  + I LPS R L Y     G+ S+ +           
Sbjct: 77  --NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE++ E P      +
Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNG-L 193

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/496 (15%), Positives = 166/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L +  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 370 DAFKAWLANGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +    K+++++I
Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 808 NTPIQGTAADIIKKAM 823



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 326 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 380

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 381 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 439

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 440 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 498

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 499 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 558

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 559 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 600

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 601 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 652

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 653 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 712

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 713 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 772

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 773 ADILKIAMIE 782


>gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638]
 gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638]
 gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68]
          Length = 231

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
              F T A    LDL + +         +   +A+S +     +   + + +++   AC+
Sbjct: 1   MSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVF-IACD 59

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +K+ WR  H      W +L       +      + ++      L +RR    + I LPS
Sbjct: 60  SLKRLWRRAHPATCDFWYELERTVRTAI-----ATPQKTLYCGYLKIRRDGAWLRIQLPS 114

Query: 565 SRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            R + Y      KG+ +Y+  N+ + +  R +TYGGKL EN+ QA +RD+L   M     
Sbjct: 115 GRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIED 174

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            GY IVLTVHDEI+SE PD+P +S   +  L+   P WA  +PL A G+E+ RYRK
Sbjct: 175 AGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            L  RF   SI S   D    + V+A     E       A RE    L      E  L  
Sbjct: 425 YLTERFSVPSIASGSVDVECVSMVKALLAMNEAACE--SARREELWSLYE--TIELPLIH 480

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               +   G  ID + + +      +E  ++ ++I +L      +      L + LF   
Sbjct: 481 TLVVMEKNGIYIDTEKLAETTTRFKEELAQVQQEIYELAGENF-NINSPKQLGVILFEKM 539

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGR 304
            + ++  ++           +  L  +  +     +  ++ KL       L+  ++   R
Sbjct: 540 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTR 597

Query: 305 -LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T      + TGR S      QN+P +                              
Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R+      G   LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      D
Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQD 692

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V+ E+R+  K +   + Y     G ++            +  +         + D    
Sbjct: 693 DVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           E+H                     +   +      A+   + GTA +++K A     Q 
Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQMEQK 811


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/492 (16%), Positives = 163/492 (33%), Gaps = 60/492 (12%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           E +      L +L DET      +S    +      GI++     +   +LA     P+ 
Sbjct: 425 ETAVADPKFLAWLGDETKKKTMFDSKRAAVAL-NGKGIELAGVGVVFDLLLAAYLLDPAQ 483

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                 A+     + + E  ++  A + KG+  + P + T A  +          +  + 
Sbjct: 484 AAGDVAAV---AKMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEQLVRKAAAIWALEEPLM 540

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                 ++   L++ E  L  +   +   G ++D   + ++   + ++ + ++  I +L 
Sbjct: 541 DELRRNEQDRLLTELEHALAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA 600

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    + ++  ++    T   +L          + IL+     
Sbjct: 601 GQEF-NINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLG 659

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 +  L + V    G++         ++TGR S      QN+P +           
Sbjct: 660 KLQSTYIEGLLKVVHPVTGKVHTMFN-QALTQTGRLSSVEPNLQNIPIR----------- 707

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   + S    L+  AD + IE RVLA IA +D  I+AF 
Sbjct: 708 -------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFR 754

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
              DI+  T    F+   + V+   R   K +   + Y     G A+            +
Sbjct: 755 RWLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFI 814

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           +++  +      + D                          S +  ++      A+   +
Sbjct: 815 ERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRTFAERTAMNTPI 874

Query: 499 IGTACELVKKAW 510
            G+A +++KKA 
Sbjct: 875 QGSAADIIKKAM 886



 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS 643
           RT+  +   N  +Q  + DI+ + M +        +    ++L  HDE++ E P      
Sbjct: 862 RTFAERTAMNTPIQGSAADIIKKAMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGR 921

Query: 644 VGTLC-SLMTKN 654
           +  L   +M + 
Sbjct: 922 LCRLVPEVMEQA 933


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +     ++    +  K   G+DI    +    ++A        L  A  
Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPGLEVVAEHVARKVHVLYDVK 473

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D D +  + E +A   K+++++I
Sbjct: 474 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAKDPGLV 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 688 EAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + D                       +  S +  ++      A+
Sbjct: 748 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 807

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +++KKA 
Sbjct: 808 NTPIQGSAADIIKKAM 823



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 702 MDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
                  V         +   + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 762 QEYMDEIVKDAKQKGYVVTLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGSAADI 818

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876

Query: 663 LKAE 666
           LK +
Sbjct: 877 LKVD 880


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 687 HASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 807 ADILKIAMIE 816


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/593 (15%), Positives = 191/593 (32%), Gaps = 102/593 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60
           +D ET         G+  + +   I   ++A         D + ++ +  D     + + 
Sbjct: 360 VDFET--------TGLDVFKD--TIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFET 409

Query: 61  LRDETVMCVAHNSLFERIL---FKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACL 114
           L  E +  + HN  +E  +     K+ G          T V A           + +  +
Sbjct: 410 LAKEDIKVIGHNLKYEYKMMRAINKSFGNMYF-----DTMVAAYLINPTRGRYNMDDLAI 464

Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172
           A L+++          A          D   Y C  A+   + ++ F    K     T  
Sbjct: 465 AYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLK-----THN 519

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L +      + E  L  +   +   G  I  + +  L +  +   +K  + I        
Sbjct: 520 LEELFF---NIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEAGEEF 576

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            + +    L   LF   GI     ++    T + +L+  +      + +L     +    
Sbjct: 577 -NIQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLKN 635

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             L+     ++   GR+  +      + TGR S      QN+P                 
Sbjct: 636 TYLDVFPTLINEKTGRIHASFN-QTVTATGRLSSSEPNLQNIP----------------- 677

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G     +R+  IA  G  L+ AD + IE R+LA  + +   ++AF N +DI
Sbjct: 678 -------VRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDI 730

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T  K ++   + V+   R I K++  ++ Y     G +K            ++ +  
Sbjct: 731 HRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFS 790

Query: 465 NVKSTSTFEDWEQAE----------------------SHHLWMQDQYPEFAVKDKLIGTA 502
                  F +    E                      S +   +++    A+   + G+A
Sbjct: 791 TYSRVKPFCEEVVEEVRNKGYVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGSA 850

Query: 503 CELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
            +++K A  A H+           V+Q+  +L    +    +      + +  
Sbjct: 851 ADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAMTIMKEIME 903



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650
              ++Q  + D++   M    K          IV+ VHDE+V E  +       T+   +
Sbjct: 842 LNTLIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAMTIMKEI 901

Query: 651 M 651
           M
Sbjct: 902 M 902


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             V +++    +   +   I +         +LA     PS   +   ++          
Sbjct: 366 TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 419

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E +   A + KG+  S P +   A+H+    +     ++ + A  E  ++L  + D E  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 479

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +  +G  +D + +  ++  +A   K L+E I  L      +      L + LF
Sbjct: 480 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAF-NINSPKQLGVILF 538

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302
              G+  V  ++    T   +L   +      D IL            +  L +      
Sbjct: 539 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 598

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            ++         ++TGR S      QN+P +                             
Sbjct: 599 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 633

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   
Sbjct: 634 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 693

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           D+V    R   K +   + Y     G ++            + ++  +  +   +     
Sbjct: 694 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 753

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                               +  S +  ++      A+   + G+A +++KKA     + 
Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 813

Query: 517 VL 518
           ++
Sbjct: 814 LV 815



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 109/581 (18%), Positives = 202/581 (34%), Gaps = 95/581 (16%)

Query: 2   SKLFIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
               ID ET S  P     VGV     +      AY      V   + T+   +   L +
Sbjct: 318 KTFSIDTETTSLDPFSAKLVGVSISTNEGE----AYYIPISHVSENNLTK-EIVLKFLKE 372

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L  E    V  N  F+  +F   +   I  +     +++A     P   +     L   
Sbjct: 373 ILECERYNIVGQNLKFDYKVF---MVNGIEPQIPHFDTMVAAYLINPEERRYNLEELALK 429

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               KM   + L+        ++ P      + +   +   EY   DV+ T  L+  L  
Sbjct: 430 YLGYKMISFEELVD-------NNMPLFGNDFSFISI-EKAAEYSCEDVDITFRLYSYLSK 481

Query: 180 LS--------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E  L  +   +   G   D+D + +L +   +E KKL+E I +++   
Sbjct: 482 YIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEEKIFEISGEQ 541

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +   +  +   LF    + +V  +  T ++  +   + +LAKD  + RL        K
Sbjct: 542 F-NINSSKQVAEILFEKLKLPIVKKT-ATGRNSTNAEVLEELAKDYEIARLILEYRKFQK 599

Query: 292 L-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     +++  +V+ +  R+  +    G + TGR S      QNLP +            
Sbjct: 600 LKSTYVDSIPSSVNITTNRVHSSFHQTG-TSTGRLSSSAPNLQNLPTRS----------- 647

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R  +        +V AD + IE RVLA ++ ++  + AF N
Sbjct: 648 -------------EEGKEIRHAVKPQFENWYIVGADYSQIELRVLAHMSEDEKLLDAFEN 694

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
             DI+  T +K FN     V+++ R IGK++  A+ Y     G ++      +     + 
Sbjct: 695 DYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISPYGLSRRIGLNVNETKKIID 754

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
            + +  +    F                         Q +  +  +  +    A+   + 
Sbjct: 755 NYFKYYQGVFEFIKKTIDFAKKNGFVKTLFGRKRFIPQLKLKNKNLIQEGERIAINTPVQ 814

Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC 530
           GTA +++K A    H          + +LQ+  +L      
Sbjct: 815 GTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVFEVPF 855



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 17/116 (14%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             + V    +  +   K++  +     R+     +K     L             G ++ 
Sbjct: 759 YYQGVFEFIKKTIDFAKKNGFVKTLFGRKRFIPQLKLKNKNLIQE----------GERIA 808

Query: 599 ENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
            N  VQ  + DI+   M               ++L VHDE+V E P      V  +
Sbjct: 809 INTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVFEVPFDELQIVKEI 864


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             V +++    +   +   I +         +LA     PS   +   ++          
Sbjct: 376 TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 429

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E +   A + KG+  S P +   A+H+    +     ++ + A  E  ++L  + D E  
Sbjct: 430 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 489

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +  +G  +D + +  ++  +A   K L+E I  L      +      L + LF
Sbjct: 490 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAF-NINSPKQLGVILF 548

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302
              G+  V  ++    T   +L   +      D IL            +  L +      
Sbjct: 549 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 608

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            ++         ++TGR S      QN+P +                             
Sbjct: 609 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 643

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   
Sbjct: 644 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 703

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           D+V    R   K +   + Y     G ++            + ++  +  +   +     
Sbjct: 704 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 763

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                               +  S +  ++      A+   + G+A +++KKA     + 
Sbjct: 764 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 823

Query: 517 VL 518
           ++
Sbjct: 824 LV 825



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 805 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 857


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 95/570 (16%), Positives = 179/570 (31%), Gaps = 111/570 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDL-L 58
             D ET S             E   I   ++A+++                  +   + L
Sbjct: 324 SFDTETTS------------LENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEKIAL 371

Query: 59  QYLRDETVMCV-AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           + +       V  HN  F+  + K                        P  L +      
Sbjct: 372 KAIEKILEKKVIGHNLKFDFKMLKDYKIKTPTPFADTMILGWIIDPDSPVGLDSLAK-RY 430

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +    K +E       F +  I +                  +Y   D   T +L++ L
Sbjct: 431 LNHQNIKYKEIVGKNQNFSEIDIKTAA----------------KYASEDAIITLKLYEVL 474

Query: 178 ---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                      + + E  L  +   +   G ++D++ + KLQ+ + Q+ + L ++I  L 
Sbjct: 475 KEKTWEEVKWDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNLA 534

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                + +    L   LF +  + +   ++    T + +L+    T    + +L      
Sbjct: 535 GSEF-NIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEKLLEYRKFD 593

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 +  L E    D   +    F    + TGR S      QN+P             
Sbjct: 594 KLLTTYIIPLKEYAKKDKNQKVYTNFLQTGTATGRLSSKNPNLQNIPTSTEIN------- 646

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R+  I    K  +  D + IE R+LA  + +   I+AF N
Sbjct: 647 -------------------IRNAFI--TDKLFISLDYSQIELRLLAHFSKDPHLIEAFLN 685

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQ 460
            +DI++ T AK F    +  +KE R+I K +   L Y  G K                ++
Sbjct: 686 DKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGPKKLSETINVSTKEAKEFIE 742

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIG 500
           ++ +N  +   F +  + E+      +                     Y   AV     G
Sbjct: 743 KYFENFSTVKDFIEKTKVETKEKGYVETLFKRRRFFDFNSANARTLAAYEREAVNTIFQG 802

Query: 501 TACELVKKAWRA------KHQGVLQLWKDL 524
           +A +++KKA           + +LQ+  +L
Sbjct: 803 SAADIIKKAMIDIKNKFPSSKMILQIHDEL 832



 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GYDIVLTVHDEIVSE 635
            + +  ++       Y  +    I Q  + DI+ + M +         ++L +HDE++ E
Sbjct: 776 RFFDFNSANARTLAAYEREAVNTIFQGSAADIIKKAMIDIKNKFPSSKMILQIHDELIFE 835

Query: 636 TP-DTPYFSVGTLCS 649
                  +    +  
Sbjct: 836 IDNKDEAYEYKEIME 850


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             V +++    +   +   I +         +LA     PS   +   ++          
Sbjct: 366 TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 419

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E +   A + KG+  S P +   A+H+    +     ++ + A  E  ++L  + D E  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 479

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +  +G  +D + +  ++  +A   K L+E I  L      +      L + LF
Sbjct: 480 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILF 538

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302
              G+  V  ++    T   +L   +      D IL            +  L +      
Sbjct: 539 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 598

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            ++         ++TGR S      QN+P +                             
Sbjct: 599 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 633

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   
Sbjct: 634 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 693

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           D+V    R   K +   + Y     G ++            + ++  +  +   +     
Sbjct: 694 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 753

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                               +  S +  ++      A+   + G+A +++KKA     + 
Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 813

Query: 517 VL 518
           ++
Sbjct: 814 LV 815



 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/538 (15%), Positives = 183/538 (34%), Gaps = 88/538 (16%)

Query: 39  DEPVKLWDRTEQ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           +  VK                  ++ + L +E +  + H+   +  +     GI++  K 
Sbjct: 322 EGEVKAVSFATDDESFFVEVDDYEVFKLLDNEKLTLIGHDIK-DFFVNLSYHGIELNCK- 379

Query: 93  WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +  T+++        S  +    L              + +GK+  +           Y 
Sbjct: 380 FYDTAIMTYLLNPSESNYDIGRVLKKYLKEDIPNIEDMLGKGKSKKSYDDIDKKLLIDYL 439

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           C  A+ +   +       +++E    L          E  L  + +++   G+ +D D++
Sbjct: 440 CATASKLSKLKDKLMSFIKEMEMEELLDN-------VELPLVEVLKSMEVYGFTLDKDVL 492

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LK 262
             L + I ++  K+ +DI         +   T  L  +LF    +  +  ++      ++
Sbjct: 493 KDLSKEIGEKTDKIIKDIYDAAGYEF-NINSTKQLSEFLFDKLNLPPIKKTKTGYSTDME 551

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            ++      ++  ++I  R      +   ++     +  D ++  T +   A+ TGR S 
Sbjct: 552 VLVELIPYNEIVGEIIEYRQLMKLKST-YIDGFMPIMDKDDKVHSTFKQTVAA-TGRISS 609

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P                                +R   I+S  G  +V AD 
Sbjct: 610 TEPNLQNIP------------------------VRDEFGRRIRKAFISSFQGGYIVSADY 645

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++ +   I++F N EDI++ T ++ F    ++V+ E R   K +   + Y
Sbjct: 646 SQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGEMRRRAKAVNFGIVY 705

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WE 476
                G ++  K         +  +    K    + D                       
Sbjct: 706 GISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIP 765

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           +  S +   +      A+   + G+A +++K +             K + +LQ+  +L
Sbjct: 766 EINSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQIHDEL 823


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 139/424 (32%), Gaps = 73/424 (17%)

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +    +        +D E  L  +   +   G  +D+D + +L++         +  
Sbjct: 461 AERLAVELDEAGLYSVYADLEVPLAPVLGRMERAGIAVDVDALEELRKQAQAATDDAESA 520

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQL 273
              L D    +      L+  LF   G+     ++            L  +  H  +  L
Sbjct: 521 ARNLVDKPELNLGSPKQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYL 580

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            K     ++ S+      +  L +AV+ DGR+  T     A+ TGR S      QN+P +
Sbjct: 581 LKFRESQKMKST------VEGLIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVR 633

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392
                                         +R   +   G  +L+ AD + IE RV+A +
Sbjct: 634 T------------------------EFGRRIREAFVVGEGYAQLITADYSQIEMRVMAHL 669

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           + +   I+A+  GED++    +K F   ID+V+ E R   K M   L Y     G A+  
Sbjct: 670 SQDPGLIEAYRQGEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYGLAYGLSAFGLAQQL 729

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487
                     ++ + +       +      ++                      +   +D
Sbjct: 730 DIPQREAKKLMEDYFERFGGVRDYLHKVVEQARKDGFTATMFDRRRYLPELNADNRIARD 789

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISAR 541
                A+   + G+A +++K A               ++   + +     V +G   + +
Sbjct: 790 NAERAALNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVADGEEAAIK 849

Query: 542 RVAN 545
            + +
Sbjct: 850 ELLH 853


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITREQAQQYIDTYF 746

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 807 ADILKIAMIE 816


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 134/423 (31%), Gaps = 62/423 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  L  +   +   G   D D +L LQ+    +  ++     ++       S    
Sbjct: 529 LRDVELPLVTVLAGMERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEIVGRPFNLS-SPK 587

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L++ LF   G+      +    +            D  L  +      + +L    ++L
Sbjct: 588 QLQVILFDELGLPKTKKIKTGYTTDADALAWLSTQADHPLLAVLLRHRDVARLRTVVDSL 647

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              +   GR+  T     A+ TGR S      QN+P +                      
Sbjct: 648 IPMIDDAGRVHTTFNQMIAA-TGRLSSADPNLQNIPVRT--------------------- 685

Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE R++A ++G+   I AFA+GED++    A
Sbjct: 686 ---AEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTFVAA 742

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           +AF  P+D+V  E R   K M   L Y     G A             ++ +        
Sbjct: 743 QAFGIPVDEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIHPEEAREQMEAYFARFGGVR 802

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F                            S +   +      A+   + G+A +++K A
Sbjct: 803 DFLRGVVERARADGYTETILGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIA 862

Query: 510 W------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                    +H    +L   + +     +  G       +         +    + + + 
Sbjct: 863 MLGVDRKLREHGARSRLLLQVHDELVLEIAPGERADVEALVRTEMGGAYQMSVPLEVSVG 922

Query: 564 SSR 566
           S R
Sbjct: 923 SGR 925


>gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
 gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
          Length = 811

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/487 (14%), Positives = 153/487 (31%), Gaps = 69/487 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           L + L  + +        F+R  +      ID+P   +   + LA+     +        
Sbjct: 358 LQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAF--DTRLAKYLLSTTEDNLVSTI 415

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174
                +L    +       + KG+  + P       H+            +    ++L  
Sbjct: 416 ARLYTNLPLDTDDAV----YGKGAKRAIPEKTRFLEHLAK--KVKVLVDSEANIMQQLKA 469

Query: 175 -KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++   L + E+ L  +   +  RG ++  + + ++     +  + L ++I +L      
Sbjct: 470 NEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF   G+ +    +       +   + +LA    L         I KL 
Sbjct: 529 NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + +  DG++         ++TGR S      QN+P                 
Sbjct: 589 STYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSSSDPNLQNIP----------------- 630

Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   + S     L+ +D + IE RVLA I+ ++  I AF  G D
Sbjct: 631 -------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F     + V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTY 743

Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       + +                          S +  ++      A+   + G+
Sbjct: 744 FERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGS 803

Query: 502 ACELVKK 508
           A +++K 
Sbjct: 804 AADILKM 810


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/515 (12%), Positives = 163/515 (31%), Gaps = 87/515 (16%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D  E        + +L++ +     +++    +   +        +  +  ++LA     
Sbjct: 354 DLFENEY----FIAWLKNASSQKKVYDAKRTYVALNRY---AAAPQGIVFDTLLAAYLLD 406

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +   +       ++H               KG     P D          ++F  +  R
Sbjct: 407 TN--DSNNDIAGVAKHYGFYAIQSDEAIY-GKGVKRGLPADE---------EVFFAHLAR 454

Query: 166 DVEA----------TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            V A                +    +D E  L  +   +   G R+D   + +++   A+
Sbjct: 455 KVAAINYLSVRLAKELAEKNQTALFTDMELPLSKILAEMEITGIRVDASRLHQMKGEFAE 514

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNIT 271
              ++++ I +       +      L + LF   G+ ++  ++      +  +       
Sbjct: 515 RLHEIEQKIYQEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQA 573

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            + +D+++ R  +   +   +  L + +  DG++         ++TGR S      QN+P
Sbjct: 574 PIVEDILIYRQIAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIP 631

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
            +                              +R   +       +  +D + IE RVLA
Sbjct: 632 IR------------------------LEEGRKIREAFVPRAKDWVIYSSDYSQIELRVLA 667

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGA 445
            I+ ++    AF  G+DI+ +T  + F     ++V+   R   K +   + Y     G +
Sbjct: 668 HISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMRRQAKAVNFGIVYGISDYGLS 727

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484
           +            +  + +      T+ +                          S +  
Sbjct: 728 QNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYVETLYHRRRYLPDINSRNFN 787

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           ++      A+   + G+A +++K A     + + +
Sbjct: 788 LRTFAERTAINTPIQGSAADILKIAMIDLDRRLKE 822



 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            RT+  +   N  +Q  + DIL   M +  +          ++L VHDE+V E P+    
Sbjct: 788 LRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQATMLLQVHDELVFEVPEDELE 847

Query: 643 SVGTLC-SLM 651
            +  L   +M
Sbjct: 848 RLDALVKEVM 857


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 153/424 (36%), Gaps = 75/424 (17%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVL 207
             W    ++ +  +E   EL K+L          + E  L  +   +   G +++ + + 
Sbjct: 489 PEWAKLADHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMT 548

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L++  A++  K  E+   L D    +      L+  LF    ++L    +       + 
Sbjct: 549 ALRDSTAEKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDK--LELSKTKKTKTGYSTAA 606

Query: 268 SNITQLAKDLILNRLA--SSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             I +LA+      L    +     K    L+ L +A++SDGR+  T     A+ TGR S
Sbjct: 607 KAIERLAEKHPHPFLDHLLAHREYQKRVSTLDGLIKAIASDGRIHTTFN-QTATATGRLS 665

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R+  +   G + L+ AD
Sbjct: 666 STDPNLQNIPVRT------------------------EEGRQIRAAFVPGEGYEALLTAD 701

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RV+A  + +   I+A+ +GED++    ++ F+ P+++V+ E R   K +   L 
Sbjct: 702 YSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALSYGLV 761

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481
           Y     G ++            + ++ +       + +     +                
Sbjct: 762 YGLSEYGLSQQLDISVREAKKIMVKYFERFGGVRRYLNEVVDRARKDEYTSTMLGRRRYL 821

Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLT 525
                 +   ++     A+   + GTA +++K A           +   + +LQ+  +L 
Sbjct: 822 SDLASLNRQARENAERAALNAPIQGTAADIIKVAMIRVDAALKKEKLASRVLLQVHDELD 881

Query: 526 EGFA 529
              A
Sbjct: 882 VEVA 885



 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 105/306 (34%), Gaps = 35/306 (11%)

Query: 387 RVLAW------IAGEDWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGK 433
            +LA       ++  D  IKA A+   I+         T   +   P  +    +   G+
Sbjct: 623 HLLAHREYQKRVSTLDGLIKAIASDGRIHTTFNQTATATGRLSSTDPNLQNIPVRTEEGR 682

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +  A     G +   T A +  ++++  +   +     E +   E  H ++  Q  +  
Sbjct: 683 QIRAAFVPGEGYEALLT-ADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVP 741

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           V +         +++  +A   G++     L+E       +     A+++          
Sbjct: 742 VNEVTPE-----LRRRVKALSYGLV---YGLSEYGLSQQLDISVREAKKIMVKYFERFGG 793

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE-RTYGGKLTENI-VQAISRDILC 611
            +R ++ V+  +R+  Y+          +  + L R+ R    +   N  +Q  + DI+ 
Sbjct: 794 VRRYLNEVVDRARKDEYTSTMLGRRRYLSDLASLNRQARENAERAALNAPIQGTAADIIK 853

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWA----KG 660
             M               ++L VHDE+  E  +     V  +    M +    A     G
Sbjct: 854 VAMIRVDAALKKEKLASRVLLQVHDELDVEVANGELEQVRGIIQREMDEAIELAVPLEVG 913

Query: 661 LPLKAE 666
           + + A+
Sbjct: 914 MAVGAD 919


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/538 (15%), Positives = 167/538 (31%), Gaps = 98/538 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115
           L  ++          N  F+R +F       +  +     ++LA                
Sbjct: 439 LRSWIESPEKEKTLQNCKFDRQIF---YNHGLNLRGVTFDTLLADYILNNQEKHGLSEIS 495

Query: 116 ---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRDVEATR 171
                F     K   GK     F   +  S           +  ++F E +   + + T 
Sbjct: 496 FREFGFKPPTFKETVGKNKDFSFVDINDASTYCGYDVLLTFKIAKIFKERFNNENKDLT- 554

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
               +L    + E  L  +   +   G RID   + +L   +    + ++E++ ++    
Sbjct: 555 ----KLFK--EIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEENVFEIAKQE 608

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              S     L   LF    +D     +           + +L ++  +         + K
Sbjct: 609 FNLS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPFLIKHRTLSK 667

Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           L     + L   +S   GR+        A+ TGR S      QN+P +            
Sbjct: 668 LLSTYIDALPNLISEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT----------- 715

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   +   G KL+ AD + IE R+LA +A E+  I AF   
Sbjct: 716 -------------EFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEILINAFHKN 762

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCGLDLQQ 461
           +DI+  T    F    + ++ ++R +GK +   + Y  G K F        +     L +
Sbjct: 763 DDIHSLTARLIFEK--EDINSDERRVGKTINFGVIYGMGIKKFARSTGVSTTEAKEFLIK 820

Query: 462 FSQNVKSTSTFEDWEQ---------------------------------------AESHH 482
           + +       F ++++                                         +  
Sbjct: 821 YKERYAKIFKFLEFQERLALSKGYVETIFGRKREFKFDKNGLGRLIGKDPYEIDLQTARK 880

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQE 534
             M+ Q    A    + G++ +++K A    ++ +      +++   + +     VQ 
Sbjct: 881 AGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDELLFEVQP 938


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/496 (15%), Positives = 166/496 (33%), Gaps = 82/496 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L +  +     ++    +  K   GID+    +    ++A        L  A  
Sbjct: 356 DAFKAWLANGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 459

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +    K+++++I
Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEI 519

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281
            KL      +      L + LF    + ++  ++    +     +      ++I   L+ 
Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 578

Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + V  D  ++         ++TGR S      QN+P +       
Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  +  AD + IE RVLA IA +   +
Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +  DI+  T    F    D+V+   R   K +   + Y     G ++         
Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++++ ++      + +                       +  S +  ++      A+
Sbjct: 734 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793

Query: 495 KDKLIGTACELVKKAW 510
              + GTA +++KKA 
Sbjct: 794 NTPIQGTAADIIKKAM 809



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             + G   + V    R +    + G++    D        + ++  +    +       V
Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V             + +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804

Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           + + M        + G    ++L VHDE++ E P      +  L   +M      A  +P
Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862

Query: 663 LKAE 666
           LK +
Sbjct: 863 LKVD 866


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 151/490 (30%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ---GGAKV-FKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G               +  + 
Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSPKLGITRKQAQQYIDTYF 746

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 807 ADILKIAMIE 816


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/524 (15%), Positives = 175/524 (33%), Gaps = 72/524 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           +  +A  +  V  +   + S +   +L   + +E ++    N   + +LFK+   + +  
Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403

Query: 91  KRWICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPP--YD 146
           K      +L        +  N    L   F  +L   E+     A+F   +  +    + 
Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFTVPTDTNLLLSHV 463

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +A+      LF    ++      +  ++    +D E  L  +   +  +G +++ + +
Sbjct: 464 AHKADG-----LFK--LEKPAFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
               + +++    +   I  +  G   +      L + LF   G+ ++  ++    T   
Sbjct: 517 RNKGKDLSERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322
           +L          D IL     +      ++ L   +   D ++         ++TGR S 
Sbjct: 576 VLEKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRF-LQTLTQTGRLSS 634

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P +                              +R+  + S    ++  AD 
Sbjct: 635 VDPNLQNIPMRS------------------------EEGRLIRTAFVPSHPNWQIFGADY 670

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALG 440
           + IE RVLA + G+    KAF NGEDI+  T    F    D  V   +R   K +   + 
Sbjct: 671 SQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIV 730

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A       +     +  + Q       + +                      
Sbjct: 731 YGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRRRYL 790

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              ++ +  ++      A+   + G+A +++K A    ++ + +
Sbjct: 791 PDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRE 834



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    +          ++L VHDE++ ETP      +  +  ++M   
Sbjct: 813 IQGSAADIIKIAMIKVNEALRENNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSA 872

Query: 655 PSWAKGLPLKAEGYEAKRY 673
              A  +PLK + +    +
Sbjct: 873 V--ALDVPLKVDAHHGDTW 889


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 135/419 (32%), Gaps = 64/419 (15%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            L  RF   SI S   D    + V+A     E       A RE    L      E  L  
Sbjct: 425 YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 480

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               +   G  ID + + +      +E  ++ ++I  +      +      L + LF   
Sbjct: 481 TLVVMEKNGIYIDTEKLAETTARFKEELAQVQQEIYDIAGETF-NINSPKQLGVILFEKM 539

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303
            + ++  ++           +  L  +  +     +  ++ KL       L+  +     
Sbjct: 540 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTK 597

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T      + TGR S      QN+P +                              
Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R+      G   LV AD + IE R+LA ++G++  IKAF  G+DI+  T A+      +
Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQE 692

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V+ E+R+  K +   + Y     G ++            +  +         + D    
Sbjct: 693 DVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           E+H                     +   +      A+   + GTA +++K A     Q 
Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 811


>gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716]
          Length = 886

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 83/524 (15%), Positives = 165/524 (31%), Gaps = 77/524 (14%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           Y E     L  +   D    L  R       + L + L D  V     N+  + +   + 
Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389

Query: 84  LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
           LG+D+         +LA          + L     A ++   +   EE       + KG+
Sbjct: 390 LGVDL--AGVNFDLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 440

Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
             + P D      H+          K  +       ++L    D ER L  +   +   G
Sbjct: 441 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 500

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D   + ++   + +   +L++ I +       +      L + LF    + ++  ++
Sbjct: 501 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 559

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
               + +    + +LA    + +   +   I KL +     L + +  D +   T     
Sbjct: 560 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 617

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372
            + TGR S      QN+P                                +R     S  
Sbjct: 618 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 653

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431
           G K+  +D + +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R  
Sbjct: 654 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 713

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472
            K +   + Y     G A+            +Q + +       +               
Sbjct: 714 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 773

Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                     +  +     +      A+   + G+A +++K A 
Sbjct: 774 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 817


>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
 gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
          Length = 896

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/513 (15%), Positives = 168/513 (32%), Gaps = 87/513 (16%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFER-------------ILFKKTLGIDIPSKRWICTSVL 99
           +P+D  + L     + +   ++FE              I++ K  GI +  K  I    +
Sbjct: 362 LPNDKNKALE----IILQFQAIFENKNKILISADVKNDIIWLKRAGIKL--KNDIFDIKI 415

Query: 100 ARTNGLPS-SLKNACLALNFSEHL--TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           A     P  S     +AL +  +      +E + L  +F + +         + +    +
Sbjct: 416 AHYVLHPDISHDLGRVALEYLNYKLSGSKKEDQQLTLQFDEEAGTEDNDFAEKTD--VIF 473

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QL  + C  D++ T      L   ++ E  L  +   +   G  ID + +  +   + + 
Sbjct: 474 QLHEKLCD-DLQQT----GLLALYNNIEMPLVFVLADMEYEGVSIDCNELQSISSELKER 528

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              ++++I +L      +      L   LF    ID       + +   S   + +L  +
Sbjct: 529 IDIIEKEIYELAHQEF-NISSPKQLGEVLFDKLKIDSNHKKTKSGQYSTSEQVLVKLEDE 587

Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +         + KL       L   +    G++        A+ TGR S      QN+
Sbjct: 588 HPIINKILDYRGLKKLLTTYAEALPSFIDPGTGKIHTHFNQAEAA-TGRLSSLNPNLQNI 646

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVL 389
           P +                              +R   +  ++      AD + +E R++
Sbjct: 647 PIRT------------------------EEGRKIRKAFVTGNDDYLFFSADYSQVELRLM 682

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++ +   I AF +G D++  T +K ++  +++V+ E R   K     + Y     G A
Sbjct: 683 AHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANFGIIYGISAWGLA 742

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484
           +            +  +         + +                          S +  
Sbjct: 743 ERLHISRKEGKELIDGYFDLYPGVKKYMEESVEKARKKEFVETIMGRRRYLRDINSRNAV 802

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++      A+   + G+A +++K A     + +
Sbjct: 803 VRGMAERNAINAPIQGSAADIIKMAMICIQKRI 835


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 79/524 (15%), Positives = 174/524 (33%), Gaps = 72/524 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           +  +A  +  V  +   + S +   +L   + +E ++    N   + +LFK+   + +  
Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403

Query: 91  KRWICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPP--YD 146
           K      +L        +  N    L   F  +L   E+     A+F   +  +    + 
Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFAVPTDTNLLLSHI 463

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +A+      LF    ++      +  ++    +D E  L  +   +  +G +++ + +
Sbjct: 464 AHKADG-----LFK--LEKPAFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
               + + +    +   I  +  G   +      L + LF   G+ ++  ++    T   
Sbjct: 517 RNKGKDLYERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322
           +L          D IL     +      ++ L   +   D ++         ++TGR S 
Sbjct: 576 VLEKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRF-LQTLTQTGRLSS 634

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P +                              +R+  + S    ++  AD 
Sbjct: 635 VDPNLQNIPMRS------------------------EEGRLIRTAFVPSHPNWQIFGADY 670

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALG 440
           + IE RVLA + G+    KAF NGEDI+  T    F    D  V   +R   K +   + 
Sbjct: 671 SQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIV 730

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A       +     +  + Q       + +                      
Sbjct: 731 YGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRRRYL 790

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              ++ +  ++      A+   + G+A +++K A    ++ + +
Sbjct: 791 PDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRK 834



 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    +          ++L VHDE++ ETP      +  +  ++M   
Sbjct: 813 IQGSAADIIKIAMIKVNEALRKNNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSA 872

Query: 655 PSWAKGLPLKAEGYEAKRY 673
              A  +PLK + +    +
Sbjct: 873 V--ALDVPLKVDAHHGDTW 889


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/520 (15%), Positives = 164/520 (31%), Gaps = 97/520 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +L  L+D  +   A +      L+K  +G     +       LA     P +      
Sbjct: 376 EAVLSLLQDPAISKAAADPK---ELYKYMMGQGKNLQGITDDPALAGYLYEPGASGYGIQ 432

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL          EG                         Q         +  +E  R L 
Sbjct: 433 ALGEEFLPAASGEG------------------------AQDTAALVPVLREKLE-ERGLT 467

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +      D E  L      +   G  +D  ++ ++   + ++ + L++           +
Sbjct: 468 RL---YEDIELPLTENLAEMEFTGIAVDQAMLDEVTGEMTKKVQALEQQAWDQAGEQF-N 523

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L + LF   G+ ++  ++    T  S+L          + +++    S      
Sbjct: 524 LNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEALQGEHPLIETLISYRQLSKLLSTY 583

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           L  L   ++   GR+        A+ TGR S      QN+P +                 
Sbjct: 584 LLGLHPLINPATGRIHTHFN-QMATVTGRLSSTEPNLQNIPTRT---------------- 626

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +   G   L+  D + +E RV+A IA ++  + +F +G+D++
Sbjct: 627 --------EVGKRMREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLDSFRHGQDVH 678

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
             T ++ F  P+D+V+   R+  K +   + Y     G A+            ++ +   
Sbjct: 679 ARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYGISDFGLARQLGVPRGEAAQYIESYFAR 738

Query: 466 VKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACE 504
                 + + E+ ++  +                       +      A+   + GTA +
Sbjct: 739 YTGVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSFAERTAINTPIQGTAAD 798

Query: 505 LVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534
           ++K A           R K + +LQ+  +L        QE
Sbjct: 799 IIKVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQE 838



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 18/183 (9%)

Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           ++ G   + V    R+K    + G++    D        V  G +    +          
Sbjct: 684 EIFGVPLDQVTPYMRSKAKTVNFGIIYGISDFGLARQLGVPRGEAA---QYIESYFARYT 740

Query: 553 RHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             K  +      +R + Y +   G   YL    ++    R++  +   N  +Q  + DI+
Sbjct: 741 GVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSFAERTAINTPIQGTAADII 800

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663
              M    +N         ++L VHDE+V E P     +VG +    M      A  +PL
Sbjct: 801 KVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQETVGKIVKETMEHAVDLA--VPL 858

Query: 664 KAE 666
            A+
Sbjct: 859 VAD 861


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           VE    L ++L        L D E+ L  +   +   G  +  + +L++Q       +KL
Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++I +L      +      L + LF   G+ L    +       +   + +LA    + 
Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +       I K+ +     L + + +DG++         ++TGR S      QN+P +  
Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       +R   +       L+ +D + IE RVLA I+ 
Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449
           ++  IKAF  G DI+ +T  + F     D V+   R   K +   + Y     G +    
Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727

Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
                    +  + +       + D                          S +  ++  
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A+   + G+A +++K A     + ++              +    +    V  VP+
Sbjct: 788 AEATAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +   K+ V   +  + +L    +  +        ++
Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537]
          Length = 896

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 79/495 (15%), Positives = 166/495 (33%), Gaps = 71/495 (14%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113
           ++   +   TV    +N   +R+LFK+   +DI  +      +LA        ++ + A 
Sbjct: 375 EIKAIIESPTVEKRVYNVKAQRVLFKR---LDIELRNATFDFLLAAYLLDTTDNNAELAT 431

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDS--PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           LA  +  +L   E+     A+F   + +     +   +A+ +             V    
Sbjct: 432 LAQKYDIYLQLDEDIYGKGAKFSVPTDEGRVLMHIAHKADTL-------NQLIEPVMVQL 484

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +  ++L    D E  L  +   +   G R+D + + ++ E +  +   +++ I +     
Sbjct: 485 KEHEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEAGEE 544

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L + LF   G+ ++  ++    T   +L            IL     +   
Sbjct: 545 F-NINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEKLADQAPIVAYILQYRQLAKLK 603

Query: 289 ILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   V   D ++         ++TGR S      QN+P +  +           
Sbjct: 604 STYIDGLLAVVYRQDSKIHTRY-LQTLTQTGRLSSVDPNLQNIPMRTEA----------- 651

Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   + S    ++  AD + IE RVLA + G+    +AF N E
Sbjct: 652 -------------GRQIRKAFVPSEPNWQIFGADYSQIELRVLAHMTGDKNLQRAFLNDE 698

Query: 407 DIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           DI+  T    F    D  ++  QR   K +   + Y     G +       +     +  
Sbjct: 699 DIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGISDFGLSNNLGISRAEAKRFIDT 758

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           + +       + +  +  +H                         +      A+   + G
Sbjct: 759 YFEKFPQVHEWMENAKTLAHEQGYVETLAKRRRYLPDIHAKNFNRRSFAERTAMNTPIQG 818

Query: 501 TACELVKKAWRAKHQ 515
           +A +++K A    +Q
Sbjct: 819 SAADIIKIAMIKMNQ 833


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 159/454 (35%), Gaps = 80/454 (17%)

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                   S+ + K +    L   F K               ++A+  F  +     EA 
Sbjct: 416 MGITVEGRSDIIGKNKVSSYLTDGFDKIVKLFA---------LEAYVAFNSF----DEAM 462

Query: 171 RELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           + L +  +     D E  +  + +++   G  ++ D + +  + ++ + K L++ I K  
Sbjct: 463 KRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVNKDALKQYGDELSVKIKDLEQSIYKEA 522

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    +     ++    T   +L   +      D IL     +
Sbjct: 523 GTEF-NINSPKQLGEVLFEKLNLPCGKKTKTGYSTSADVLEKLSADYPIVDSILEYRTLA 581

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  + L+E +  DGR+  T      + TGR S      QN+P +            
Sbjct: 582 KLKSTYADGLAEYI-VDGRIHSTFN-QTITATGRISSTEPNLQNIPIR------------ 627

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +  +G   + AD + IE R+LA ++G+D  I+A+   
Sbjct: 628 ------------MELGRKIRKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNED 675

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI+  T +K F TP+D+V+  QR+  K +   + Y     G ++            + +
Sbjct: 676 RDIHKITASKVFKTPLDEVTPRQRSNAKAVNFGIVYGISSFGLSRDLSISKKEAKEYIDE 735

Query: 462 FSQNVKSTSTFEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIG 500
           +    K+   + D     +                       +MQ Q+    A+   L G
Sbjct: 736 YFNTYKTLKNYLDNLVKSAKENGYTKTIYGRRRPVPELSSGNFMQRQFGERIAMNSPLQG 795

Query: 501 TACELVKKAW----------RAKHQGVLQLWKDL 524
           TA +++K A           R + + +LQ+  +L
Sbjct: 796 TAADIIKIAMINVYKRLKNERLESRLILQIHDEL 829


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 135/421 (32%), Gaps = 61/421 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  +D+  + +  E    +  + +E   +L      +      L
Sbjct: 543 DLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQL 602

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSE 297
           +  LF   G+     ++    +  +                  +     K    L  L  
Sbjct: 603 QTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLIR 662

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +V SDGR+  T      + TGR S      QN+P +  +                     
Sbjct: 663 SVGSDGRIHTTFN-QTVASTGRLSSTDPNLQNIPVRTEA--------------------- 700

Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++    +K 
Sbjct: 701 ---GRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKV 757

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ PID V+ E R   K M   L Y     G ++     A      ++ + +       +
Sbjct: 758 FDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRY 817

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                 ++                      +   ++     A+   + GTA +++K A  
Sbjct: 818 LAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIKVAMI 877

Query: 512 AKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              + +       ++   + +     +  G     + +           +  + +   S 
Sbjct: 878 RVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAITLRVPLEVSAGSG 937

Query: 566 R 566
           R
Sbjct: 938 R 938


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/506 (13%), Positives = 167/506 (33%), Gaps = 88/506 (17%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS- 107
            +  +  DL ++  ++ +  + H+S     +    +   I  +     + +A     PS 
Sbjct: 362 NREDVLKDLKEFFENKKIAKIIHDSKNMYTVL---MKNGIKIENLAFDTAIAEYLINPSK 418

Query: 108 ---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              +LK+A   +   +   +  + K           +                       
Sbjct: 419 KEYNLKDAAEEMLLLDLTGEDNDIKIKEVYVMDKIYNKL--------------------- 457

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +D     ++ +    +   E  L  +  ++   G++++ + + ++ +    E  K+ ++I
Sbjct: 458 KDKIKEYDMDELYYKV---ELPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEI 514

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
             +      +      L   LF    + ++  ++    T   +L          + ++  
Sbjct: 515 YNMAGEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYY 573

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEIL 340
              +      +  L   +  D ++  +      + TGR S      QN+P + E   E  
Sbjct: 574 RQLTKLYSTYVEGLKPVIDVDEKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKNEMGRE-- 630

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   +   ++ AD + IE RVLA IA ++  I
Sbjct: 631 -----------------------IRKVFVPENDNCIILSADYSQIELRVLAHIADDENLI 667

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AF +  DI+  T ++ F  PI++V+   R+  K +   + Y       A+  K      
Sbjct: 668 NAFKHHSDIHTKTASEVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSLAQDIKVSKKEA 727

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +   +   + +                       +  S +  ++      A+
Sbjct: 728 KEYIDTYFERYPNVKKYLEDIVVTAKKNMYVNTIMNRRRIIPEIASSNKIVKGFGERLAM 787

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQL 520
              + G+A +L+K +    +  + QL
Sbjct: 788 NTPIQGSAADLIKLSMVNVYSKIKQL 813



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 71/195 (36%), Gaps = 16/195 (8%)

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +   +  E+   A  HH  +  +      +  +      +   A +A + G++    D +
Sbjct: 657 LAHIADDENLINAFKHHSDIHTKTASEVFRVPIEEVTSRMRSNA-KAVNFGIVYGISDFS 715

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYLNT 582
                 V +     A+   +         K+ +  ++ ++++ +Y +    +        
Sbjct: 716 LAQDIKVSKK---EAKEYIDTYFERYPNVKKYLEDIVVTAKKNMYVNTIMNRRRIIPEIA 772

Query: 583 ATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
           +++++++   +G +L  N  +Q  + D++   M N             ++L VHDE++  
Sbjct: 773 SSNKIVK--GFGERLAMNTPIQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILN 830

Query: 636 TPDTPYFSVGTLCSL 650
                   V  L  L
Sbjct: 831 VHKDELEKVKELVKL 845


>gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 916

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 83/524 (15%), Positives = 165/524 (31%), Gaps = 77/524 (14%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           Y E     L  +   D    L  R       + L + L D  V     N+  + +   + 
Sbjct: 364 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 419

Query: 84  LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
           LG+D+         +LA          + L     A ++   +   EE       + KG+
Sbjct: 420 LGVDL--AGVNFDLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 470

Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
             + P D      H+          K  +       ++L    D ER L  +   +   G
Sbjct: 471 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 530

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D   + ++   + +   +L++ I +       +      L + LF    + ++  ++
Sbjct: 531 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 589

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
               + +    + +LA    + +   +   I KL +     L + +  D +   T     
Sbjct: 590 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 647

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372
            + TGR S      QN+P                                +R     S  
Sbjct: 648 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 683

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431
           G K+  +D + +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R  
Sbjct: 684 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 743

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472
            K +   + Y     G A+            +Q + +       +               
Sbjct: 744 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 803

Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                     +  +     +      A+   + G+A +++K A 
Sbjct: 804 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 847


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/494 (17%), Positives = 164/494 (33%), Gaps = 89/494 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114
           +   L D+++  + ++      L K       DI +   +     A + GL         
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             N  + + K    + +I    K  I+    Y  T       W+L           T  L
Sbjct: 427 -KNLFKEVLKETWIENIIIESAKIVINFITLYKQT------IWELKDN-------KTFRL 472

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +      S+ +  +  +   +   G  +D + + +L      E  KL+E+I  L+     
Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287
           +      L   LF    +     S            + +L++      DL+L     +  
Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++L + + +   R+        ++ TGR S      QN+P +             
Sbjct: 586 KNTYTDSLPKQIDNITHRVHTKF-LQTSTTTGRLSSQEPNLQNVPIRS------------ 632

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                          + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +
Sbjct: 633 ------------SEGNQIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKD 680

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T  + FN    +++ E R   K +   + Y     G AK            ++++
Sbjct: 681 DIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKY 740

Query: 463 SQNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTAC 503
               K    + +  +A +                   H   ++      A+   + GT  
Sbjct: 741 FAEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNA 800

Query: 504 ELVKKAWRAKHQGV 517
           +++K A     Q +
Sbjct: 801 DIIKIAMINLDQEI 814


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 84/504 (16%), Positives = 163/504 (32%), Gaps = 76/504 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110
             LL  L D+ +     +     +   + LGI   +  +    +LA          + L 
Sbjct: 364 QPLLSLLEDQAIAKNVFDLKRTMVGLYR-LGIKSHNMNY--DMLLASYLVNNENNSNDLG 420

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             C   N+ +           I  + KG   + P +    NH+    L  E  K  +   
Sbjct: 421 EICQLYNYYDLQPD-------IDIYGKGKKAAIPEETVFFNHLAGKVLAIEVLKPTLLKK 473

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               ++       E  +  +   +   G + D   +++L    AQ   +L+ DI  L  G
Sbjct: 474 LTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADIY-LEAG 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF   G+  +  ++    + +    + QL +   + +       I 
Sbjct: 533 ERFNINSPKQLGQILFEKLGLPPIKKTKTGYSTSVE--VLEQLKEQSPIVQKVLDYRQIA 590

Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           K+ +     L + +  DGR+    Q    + TGR S      QN+P              
Sbjct: 591 KIQSTYVKGLLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP-------------- 635

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                             +R   + S  +G      D + +E RVLA ++G++   +AF 
Sbjct: 636 ----------VRLEEGKKIRKAFVPSNSDGYIF-SCDYSQVELRVLAHVSGDENMQEAFK 684

Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            G DI+  T  K F+    ++V+   R   K +   + Y     G +K            
Sbjct: 685 TGYDIHAHTAMKIFHLDSPNEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEF 744

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           +  + +       + D E   +                      +  ++      A+   
Sbjct: 745 IDNYFEQYPKIKDYMDKEINFARENGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSP 804

Query: 498 LIGTACELVKKAWRAKHQGVLQLW 521
           + G A +++K A     + + +L 
Sbjct: 805 IQGGAADIIKIAMINMQKKLDELH 828


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 85/509 (16%), Positives = 166/509 (32%), Gaps = 62/509 (12%)

Query: 28  AVITLCAYAWD-DEPVKLWDR--TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
             +TL   A   DE V   D    +   + + L  + + +      +N   +    K   
Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVI-TPLRDFFKRKDTEFYGYNIKRDNHALKNAG 382

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                    +  +      G   S +   +     E   K   GK          I   P
Sbjct: 383 IHIHNITLDLALAEHLINGGAKISYQTLLVDHGLVESAGKY--GKEWGQLSL--PILKSP 438

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                A +   +       K+ +    ++        + E  L  +  TI   G  +D++
Sbjct: 439 AKP--AEYFGEFVSHLPKIKKSLLEELKVKGLEDLFFNMEMPLEKVLFTIERNGMPLDVE 496

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            + +L+  +++E   L +DI  +      + +    L   L+   G+  +D +  T   +
Sbjct: 497 DLQELERTLSEELAILTDDIYTVAGTSF-NIKSPKQLSDVLYNKLGLTPIDKARSTKAEV 555

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           L+         + IL   A        +  L   +     R+  T    G + TGR +  
Sbjct: 556 LAALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQ 614

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLA 382
               QN+P +                              +R            + AD +
Sbjct: 615 DPNLQNIPIRSER------------------------GRLLRKAFCDTRQNNYFLSADYS 650

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R LA ++ ++    AFA+ ED++  T ++ F+ P+++V+K+QR   K +   + Y 
Sbjct: 651 QIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGIIYG 710

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------ 480
               G +K+ K   S     +  +     + + F +    E+                  
Sbjct: 711 QQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFINETINEACENLRVKTLLGRERIIDN 770

Query: 481 --HHLWMQDQYPEFAVKDKLIGTACELVK 507
                  +      AV  ++ G+A EL+K
Sbjct: 771 WTEFSNSRAASGRLAVNTRIQGSAAELIK 799


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/565 (15%), Positives = 174/565 (30%), Gaps = 89/565 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SL 109
           + +  +L D       H+    R        GI+     +     LA     P+    +L
Sbjct: 363 TPIRAWLADPERKKRGHDLH--RTDLALHWHGIEFAGAEF--DVQLAGYLLDPTDANQTL 418

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK--RDV 167
                    S  +   EE       F KG+    P     ++HV       E     +  
Sbjct: 419 SGLAAKYGLSS-IRPDEEV------FGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQA 471

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E  +    +L    + E  L  +   +  +G  ++++ +  L +    +   L  +I  +
Sbjct: 472 ELEKTEMHKLF--HELEMPLSRILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSI 529

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L   LF   G+ ++  ++           + +LA    + +      
Sbjct: 530 AGVEF-NLNSPKQLGEILFDKLGLPVIKKTK--TGYSTDAEVLEKLAPYHDIVQNILQYR 586

Query: 288 AILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            I KL +      L E     G++    +   A+ TGR S      QN+P +        
Sbjct: 587 TIAKLQSTYVEGLLKEISGKTGKVHTYFRQTVAA-TGRLSSQFPNLQNIPIR-------- 637

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   + S  G  ++ AD + IE RVLA I+ ++   +
Sbjct: 638 ----------------LEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKE 681

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +  DI+  T +  F    + V    R   K +   + Y     G ++          
Sbjct: 682 AFVHDMDIHTKTASDVFGVAAEDVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAA 741

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             + Q+    +    + D                       +  + +  ++      A+ 
Sbjct: 742 RFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMN 801

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             + GTA +++K A     +        +        +    +    V  VP   M   K
Sbjct: 802 TPIQGTAADIIKLAMVQMDK--------VLRERNLRSRMLLQVHDELVFEVPPEEMETMK 853

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYL 580
             V   + ++  L    +K + SY 
Sbjct: 854 ELVPATMEAALELAVP-LKAEVSYG 877



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 19/190 (10%)

Query: 498 LIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           + G A E V    R      + G++     +++             A R  +    V + 
Sbjct: 697 VFGVAAEDVDSNMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAARFIDQYFDVFQG 753

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDILC 611
            +R +  ++  ++R  Y     +   YL    +     R++  +   N  +Q  + DI+ 
Sbjct: 754 VRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIK 813

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
             M    K          ++L VHDE+V E P     ++  L  + M      A  +PLK
Sbjct: 814 LAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAALELA--VPLK 871

Query: 665 AE-GYEAKRY 673
           AE  Y +  Y
Sbjct: 872 AEVSYGSNWY 881


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 176/513 (34%), Gaps = 80/513 (15%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           A D+    + D         DL  +L+DET      +S   + +  + LGI++  K    
Sbjct: 346 AIDN----VVDNA-------DLKAWLQDETKKKYIVDSKATQAMLHR-LGIEL--KGVEF 391

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA--NHV 153
             +LA     PS   +    L        ++  +A+  +  K  +    +         V
Sbjct: 392 DLLLASYILKPSISGDDVATLAKEFGYQDVQSNEAIYGKGAKWVVPGADHVAEHVSRKAV 451

Query: 154 QAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             W+L     ++  E  + EL+K L      E  L  +   +   G  +++D + ++ + 
Sbjct: 452 AVWKLQPLLDQKLKENEQFELYKEL------ELPLAHILGKMESEGITVNIDTLRQMGDD 505

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           +  + + ++  I +L      +      L + LF   G+ ++  ++    T   +L    
Sbjct: 506 LKAKLEVMEATIYELAGEKF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQ 564

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   IL     +      +  L + V   D ++    Q    + TGR S      Q
Sbjct: 565 SEHDIVKYILEYRTLAKLQSTYIEGLIKEVHKEDSKVHTRFQ-QALTSTGRLSSTNPNLQ 623

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEAR 387
           N+P +                              +R   + S     L  AD + IE R
Sbjct: 624 NIPIR------------------------LEEGRKIRKAFVPSKKDWILFAADYSQIELR 659

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ---- 442
           VLA + G++  ++AF  G DI+  T    FN    D+V+   R   K +   + Y     
Sbjct: 660 VLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNFGIVYGISDY 719

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------- 481
           G ++          + ++ + Q+      + D    E+                      
Sbjct: 720 GLSQSLDITRKEAAIFIENYLQSFPGVKNYMDTSIEEAKKAGFVTTILNRRRYLPDITSS 779

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
           +  ++      A+   + G+A +++KKA    +
Sbjct: 780 NFNLRSFAERTAMNTPIQGSAADIIKKAMIDMN 812



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        + G    ++L VHDE++ E P      +  +   +M   
Sbjct: 796 IQGSAADIIKKAMIDMNARLEQEGLQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENA 855

Query: 655 P 655
            
Sbjct: 856 I 856


>gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564]
 gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564]
          Length = 877

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%)

Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           + F E+  R     VE    L ++L        L D E+ L  +   +   G  +  + +
Sbjct: 440 EKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETL 499

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       +KL ++I +L      +      L + LF   G+ L    +       +
Sbjct: 500 LEMQAENDLVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 558

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + + +DG++         ++TGR S
Sbjct: 559 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 617

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 618 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 653

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 654 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSEDVTANDRRNAKAVNFGV 713

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +             +  + +       + D                     
Sbjct: 714 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 773

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                S +  ++      A+   + G+A +++K A     + ++              + 
Sbjct: 774 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 825

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    V  VP+  +   K+ V   +  + +L    +  +        ++
Sbjct: 826 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 135/419 (32%), Gaps = 64/419 (15%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            L  RF   SI S   D    + V+A     E       A RE    L      E  L  
Sbjct: 425 YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 480

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               +   G  ID + + +       E  ++ ++I  L      +      L + LF   
Sbjct: 481 TLVVMEKNGIYIDTNKLAETTARFKDELAQVQQEIYDLAGETF-NINSPKQLGVILFEKM 539

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303
            + ++  ++           +  L  +  +     +  ++ KL       L+  +     
Sbjct: 540 NLPVIKKTK--TGYSTDAEVLDMLRNESPIVEKILAYRSVAKLVSTYLEGLAVLINDKTK 597

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T      + TGR S      QN+P +                              
Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R+      G   LV AD + IE R+LA ++G++  IKAF +G+DI+  T A+      +
Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQE 692

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V+ E+R+  K +   + Y     G ++            +  +         + D    
Sbjct: 693 DVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           E+H                     +   +      A+   + GTA +++K A     Q 
Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 811


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 126/380 (33%), Gaps = 58/380 (15%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                ++   L + E  L  +   +   G+ +D   +      +     +    IV+   
Sbjct: 464 EIREHEQEKLLYEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYAG 523

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   LF+  G+     ++       +   +  L     +         +
Sbjct: 524 YDF-NLNSPKQLGDVLFVKLGLPAKKKTKTG--YSTNVDVLEALRPQHPIIGEILEYRKL 580

Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            KL     + L + V  DGR+R T Q    +RTGR S      QN+P +           
Sbjct: 581 SKLKSTYVDGLLKVVGPDGRVRSTFQ-QTETRTGRISSTEPNLQNIPIRT---------- 629

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R    A  G KLV AD + IE RVLA +A +   I AF +
Sbjct: 630 --------------EEGSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQS 675

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
           GEDI+ TT A+ F  P   V+   R+  K +   + Y  GA    +      S     ++
Sbjct: 676 GEDIHATTAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQDIGVTVSEADSYIK 735

Query: 461 QFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEFAV--------------KDKLI 499
            +  +      + +   A +            +   PE A                  + 
Sbjct: 736 SYLAHYAGVRKYMEDTIAFARENGYVKTLFGRRRYLPELAASNKVTQAFGERVARNTPIQ 795

Query: 500 GTACELVKKAWRAKHQGVLQ 519
           GTA +++K A     + + +
Sbjct: 796 GTAADIIKIAMVRVFERLRR 815



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 565 SRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA----- 617
           +R   Y     G   YL    +     + +G ++  N  +Q  + DI+   M        
Sbjct: 755 ARENGYVKTLFGRRRYLPELAASNKVTQAFGERVARNTPIQGTAADIIKIAMVRVFERLR 814

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666
                  ++L VHDE++ E PD        +    M      A  +PL+A+
Sbjct: 815 REGLRARLILQVHDELLVEAPDDEIDRARAILKEEMEHAI--ALKVPLEAD 863


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + +L DET     +++    +   + +G            +LA      +   N   
Sbjct: 315 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 369

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
               ++H               KG+    P D      H+       ++    +++    
Sbjct: 370 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 428

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +       E  L  +   +   G R+D   + ++Q   ++  K+++E I         
Sbjct: 429 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 487

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF   G+ ++  ++      +  +        +  D++  R  +   + 
Sbjct: 488 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 547

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P +                
Sbjct: 548 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 589

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +      L+  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 590 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 641

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           + +T  + F     + V+   R   K +   + Y     G ++            +  + 
Sbjct: 642 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQYLGITRKQAQQYIDTYF 701

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       + +                          S +  ++      A+   + G+A
Sbjct: 702 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 761

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 762 ADILKIAMIE 771


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 132/369 (35%), Gaps = 54/369 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            SD +  +  +   +   G ++D + + +L      E   L+E+I  L+     +     
Sbjct: 470 YSDIDLPICFILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALSGTKF-NIGSPK 528

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293
            L   LF    +     +   +    +   + +L++      DL+L     +       +
Sbjct: 529 QLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRWRQLTKFKNTYTD 588

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +  R   T     ++ TGR S      QN+P + R                  
Sbjct: 589 SLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSR------------------ 630

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 631 ------EGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTA 684

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN    +++ E R   K +   + Y     G AK      S     ++++    K  
Sbjct: 685 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSEASEYIKKYFAEYKGV 744

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A +                   H   ++      A+   + GT  +++K A 
Sbjct: 745 QEYMEQTKAFASSNGYVINFFGRKCFIPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 804

Query: 511 RAKHQGVLQ 519
               Q + +
Sbjct: 805 INLDQEIAK 813



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           +Q  + DI+   M N  +          +VL +HDE++ E P+     V   +  +M
Sbjct: 792 IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIM 848


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 131/423 (30%), Gaps = 70/423 (16%)

Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
              T  L + L P  D          E+ L  +   +  RG R+D + +  L    A   
Sbjct: 503 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L+ +I +       S R    L   L+   G+     ++ T K   + + +  L  + 
Sbjct: 563 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 621

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +  L      + KL     + L   V+   GRL  T     A  TGR S      QN+P
Sbjct: 622 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFA-QTAVATGRLSSLNPNLQNIP 680

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G  L+ AD + IE R+LA 
Sbjct: 681 IRS------------------------EMGREIRKGFIADKGYCLISADYSQIELRLLAH 716

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV---- 447
           IA +    +AF  G DI+  T A+        V+  QR   K +   + Y   A      
Sbjct: 717 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNE 776

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486
                      ++ +         + D                            +  ++
Sbjct: 777 LGISYVEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVR 836

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542
           +     A    + GTA +++K A     + +     +L   + +       E  +    R
Sbjct: 837 EAGERLAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVAR 896

Query: 543 VAN 545
           +  
Sbjct: 897 LTR 899



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596
           + A              +  +   L   R   Y +   G   Y+    +     R  G +
Sbjct: 782 VEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGER 841

Query: 597 LTENI-VQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650
           L  N+ +Q  + DI+   M          G  ++L VHDE++ E P+     V  L   +
Sbjct: 842 LAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVARLTREV 901

Query: 651 M 651
           M
Sbjct: 902 M 902


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 92/571 (16%), Positives = 180/571 (31%), Gaps = 82/571 (14%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           A   EP +L       A    L ++L D       H++    +         +       
Sbjct: 371 AVYVEPAEL-----GEADERALAEWLADPHRPKAIHDAKGPMLALAA---RGMTLAGVTS 422

Query: 96  TSVLARTNGLPS--SLKNACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            + LA    LP   +     L L +   E     E G  L              D  R  
Sbjct: 423 DTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQLT------IDGIADDDAAREL 476

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            V+A  +       D +  R    RL  L + E  L  +   +   G  +D+D  ++L  
Sbjct: 477 AVRARAVLELAEALDRDLERRGAARL--LHEVELPLTGVLAAMERAGIAVDVDHFIQLSA 534

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            +  + K  ++           +      ++  LF   G+     ++    +     N  
Sbjct: 535 SLGGQAKDTEQQAHAAVGHEF-NLGSPKQVQQVLFEELGLPKTKRTKTGYTTDSEALNSL 593

Query: 272 QLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           +   D  +         + KL    ++L    + DGR+  T     A+ TGR S      
Sbjct: 594 RAKSDHPVLEHILRWREVAKLKSIVDSLIPMAAEDGRIHTTFNQMVAA-TGRLSSTDPNL 652

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEA 386
           QN+P +                              +R   +   G + L+ AD + IE 
Sbjct: 653 QNIPIRT------------------------AEGRQIREGFVVGEGYECLLTADYSQIEL 688

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R++A ++G++  I+AF +G D +  T ++ F  P +++  E RA  K M   L Y     
Sbjct: 689 RIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGLAYGLSPF 748

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481
           G A           + ++++ Q       +                            S 
Sbjct: 749 GLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETILGRRRYLPDLTSD 808

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535
           +   ++     A+   + G+A +++K A     + +       ++   + +     V  G
Sbjct: 809 NRQRREMAERMALNAPIQGSAADIIKVASLRVDRALRERGLASRMLLQVHDELVFEVAPG 868

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                + +           +  + + + + R
Sbjct: 869 ELEELKELVREQMTGAYELRAPLEVAMGTGR 899


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 131/423 (30%), Gaps = 70/423 (16%)

Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
              T  L + L P  D          E+ L  +   +  RG R+D + +  L    A   
Sbjct: 500 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 559

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L+ +I +       S R    L   L+   G+     ++ T K   + + +  L  + 
Sbjct: 560 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 618

Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +  L      + KL     + L   V+   GRL  T     A  TGR S      QN+P
Sbjct: 619 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFA-QTAVATGRLSSLNPNLQNIP 677

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G  L+ AD + IE R+LA 
Sbjct: 678 IRS------------------------EMGREIRKGFIADKGYCLISADYSQIELRLLAH 713

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV---- 447
           IA +    +AF  G DI+  T A+        V+  QR   K +   + Y   A      
Sbjct: 714 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNE 773

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486
                      ++ +         + D                            +  ++
Sbjct: 774 LGISYVEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVR 833

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542
           +     A    + GTA +++K A     + +     +L   + +       E  +    R
Sbjct: 834 EAGERLAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVAR 893

Query: 543 VAN 545
           +  
Sbjct: 894 LTR 896



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596
           + A              +  +   L   R   Y +   G   Y+    +     R  G +
Sbjct: 779 VEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGER 838

Query: 597 LTENI-VQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650
           L  N+ +Q  + DI+   M          G  ++L VHDE++ E P+     V  L   +
Sbjct: 839 LAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVARLTREV 898

Query: 651 M 651
           M
Sbjct: 899 M 899


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 135/421 (32%), Gaps = 61/421 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  +D+  + +  E    +  + +E   +L      +      L
Sbjct: 502 DLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQL 561

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSE 297
           +  LF   G+     ++    +  +                  +     K    L  L  
Sbjct: 562 QTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLIR 621

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +V SDGR+  T      + TGR S      QN+P +  +                     
Sbjct: 622 SVGSDGRIHTTFN-QTVASTGRLSSTDPNLQNIPVRTEA--------------------- 659

Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++    +K 
Sbjct: 660 ---GRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKV 716

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F+ PID V+ E R   K M   L Y     G ++     A      ++ + +       +
Sbjct: 717 FDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRY 776

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                 ++                      +   ++     A+   + GTA +++K A  
Sbjct: 777 LAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIKVAMI 836

Query: 512 AKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              + +       ++   + +     +  G     + +           +  + +   S 
Sbjct: 837 RVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAITLRVPLEVSAGSG 896

Query: 566 R 566
           R
Sbjct: 897 R 897


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 141/396 (35%), Gaps = 65/396 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           LS  E  L  +  ++  RG +ID + +   +  +A +    ++ I  L      +   T 
Sbjct: 402 LSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALAGEEF-NINSTK 460

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            L+  LF   GI  +  ++          ++  LA+   + +L  +  AI K+       
Sbjct: 461 ELQRILFEKLGIKPIKKTK--TGYSTDSESLQMLAQKYEIAQLIITYRAISKVISTYIRP 518

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             + +    RL  T      + TGR S      QNLP  +                    
Sbjct: 519 FLDKMDKSNRLHTTFN-QTLTSTGRLSSSNPNLQNLPAGD-------------------- 557

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R  ++A  G KL+ +D + IE RVLA ++ +   I+ F N EDI+  T  
Sbjct: 558 ---DELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHTQTAV 614

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           K F      V    R + K +   + Y  G    +K            ++++ +      
Sbjct: 615 KIFGVHPSMVDHHLRRMAKTINFGIIYGMGYVSLSKTLNISKDKARQFIEKYFERFAGVK 674

Query: 471 TF-EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKA 509
           ++ E+  +  + + +++  +                       AV   + GTA +++K A
Sbjct: 675 SYIENTTEKATKNGFVETYFGRRRYFFNINSNNKRLAQFEKRAAVNATIQGTAADIIKIA 734

Query: 510 WRAKHQG--------VLQLWKDLTEGFACVVQEGGS 537
               ++         VLQ+  +L       + E  +
Sbjct: 735 MVKLYEKLKNLDAHIVLQVHDELLVEAKEDIAENVA 770


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 87/545 (15%), Positives = 159/545 (29%), Gaps = 75/545 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D       H+     +   +              + LA    LP   S   A L L +
Sbjct: 376 LADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALPGQRSFDLADLTLRY 432

Query: 119 SEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                K   E    +         S   D   A+ ++A          D +  R    RL
Sbjct: 433 LHRELKSDTETNGQLTL-----DGSGEADEAEADAIRARAALELAAALDGDLERRSAARL 487

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             L + E  L  +   +   G   D + + +LQ+  + E   +      L      +   
Sbjct: 488 --LREMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGLVGRSF-NLGS 544

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----N 293
              L+  LF    +      +    +            D  L  +      + +L    +
Sbjct: 545 PKQLQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLKTVVD 604

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L   +   GR+  T     A+ TGR S      QN+P +                    
Sbjct: 605 SLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRT------------------- 644

Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   +   G   L+ AD + IE R++A ++G+   I+AFA+GED++   
Sbjct: 645 -----PQGRQIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFV 699

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            A+AF+ P+ +V  E R   K M   L Y     G A             +  +      
Sbjct: 700 AAQAFDLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGG 759

Query: 469 TSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVK 507
              F      ++                          +      A+   + G+A +++K
Sbjct: 760 VRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIK 819

Query: 508 KAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            A     +         +L   + +     +  G  +    +              + + 
Sbjct: 820 IAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVEVEALVRAEMGAAYEMSVPLEVS 879

Query: 562 LPSSR 566
           + S  
Sbjct: 880 VGSGL 884



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 8/122 (6%)

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594
               AR   +         +  +  V+  +RR  Y++ + G   YL   TS   + R   
Sbjct: 742 APDEAREHMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMA 801

Query: 595 GKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
            ++  N  +Q  + DI+   M    +          ++L VHDE+V E        V  L
Sbjct: 802 ERMALNAPIQGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVEVEAL 861

Query: 648 CS 649
             
Sbjct: 862 VR 863


>gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
 gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
          Length = 886

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 83/524 (15%), Positives = 166/524 (31%), Gaps = 77/524 (14%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           Y E     L  +   D    L  R       + L + L D  V     N+  + +   + 
Sbjct: 334 YHESP---LAGFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389

Query: 84  LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
           LG+D+    +    +LA          + L     A ++   +   EE       + KG+
Sbjct: 390 LGVDLAGVDF--DLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 440

Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
             + P D      H+          K  +       ++L    D ER L  +   +   G
Sbjct: 441 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 500

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D   + ++   + +   +L++ I +       +      L + LF    + ++  ++
Sbjct: 501 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 559

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
               + +    + +LA    + +   +   I KL +     L + +  D +   T     
Sbjct: 560 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 617

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372
            + TGR S      QN+P                                +R     S  
Sbjct: 618 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 653

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431
           G K+  +D + +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R  
Sbjct: 654 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 713

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472
            K +   + Y     G A+            +Q + +       +               
Sbjct: 714 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 773

Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                     +  +     +      A+   + G+A +++K A 
Sbjct: 774 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 817


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 143/416 (34%), Gaps = 55/416 (13%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
             + KG+    P D     H+          +  + A  E  ++       E  L  +  
Sbjct: 430 QIYGKGAKKKVPEDAILHEHIARKARTIWKVRPLIMAKLEDNEQFDLYDKLELPLATVLG 489

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  ++ D ++++ + +A + +K++ DI  L      +      L + LF   G+ 
Sbjct: 490 QMESLGVMVNRDQLVEMGKELAHKLEKIESDIHGLAGQEF-NINSPKQLGVILFEKLGLP 548

Query: 253 LVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            +  ++    T   +L            IL            +  L + +  DG++    
Sbjct: 549 ALKKTKTGYSTAADVLEKLEGQHEIISHILMYRQLGKLLSTYIEGLLKEIHEDGKIHTRF 608

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
           Q    + TGR S      QN+P                                +R   +
Sbjct: 609 Q-QALTTTGRLSSINPNLQNIP------------------------VRLEEGRKIRKAFV 643

Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
            S  G  +V AD + IE RVLA ++ ++  ++AF +  DI+ TT +  F+   ++V+ + 
Sbjct: 644 PSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTASDVFHVTEEEVTSDM 703

Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--- 481
           R   K +   + Y     G ++            ++++  +     ++     A++    
Sbjct: 704 RRAAKAVNFGIVYGISDYGLSQNLNIPRKEAAAFIERYFASFPGVKSYMTNIVADAKRDG 763

Query: 482 ------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                             +  ++      A+   + G+A +++KKA       + +
Sbjct: 764 FVTTLMNRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDAAIER 819


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 91/545 (16%), Positives = 163/545 (29%), Gaps = 75/545 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACL-ALN 117
           L D      AH+     +       + +        + LA    LP   S   A L A  
Sbjct: 369 LADAHQPKAAHDVKGPMLALA---ELGLTLAGVTSDTALAAYLALPGQRSFDLADLVARY 425

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               L     G   +     G  +    D  RA      +L  E    D +  R     L
Sbjct: 426 LHRDLAVEPAGNGQLTLDGSGEAEESHADAVRARA--CLELADEL---DADLERRSAAVL 480

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             L D E  L  +   +   G   D D + +LQ+    E   +     ++      +   
Sbjct: 481 --LRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIVGRTF-NLGS 537

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----N 293
              L+  LF   G+      +    +         +  D  L  +      + +L    +
Sbjct: 538 PKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLKTVVD 597

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L   +   GR+  T     A+ TGR S      QN+P +                    
Sbjct: 598 SLLPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRT------------------- 637

Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   +   G   L+ AD + IE R++A ++G++  I+AF +GED++   
Sbjct: 638 -----AEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFV 692

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            A+AF  P+ +V  E R   K M   L Y     G A             +  +      
Sbjct: 693 AAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLASQLGIAPDEAREHMDAYFGRFGG 752

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              F                            S +   +      A+   + G+A +++K
Sbjct: 753 VRDFLRGVVERARRDGYTETMLGRRRYLPDLTSDNAQRRQMAERMALNAPIQGSAADIIK 812

Query: 508 KAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            A     + +       +L   + +     +  G   +   +              + + 
Sbjct: 813 IAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDAVEALVRAEMTSAYTMSVPLDVS 872

Query: 562 LPSSR 566
           + + R
Sbjct: 873 VGAGR 877



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 35/240 (14%)

Query: 425 SKEQRAIGKVMELALGYQGGAKV------FKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           + E R I +   +  GY+            + MA   G   +   +   S      +  A
Sbjct: 637 TAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGD--EGLIEAFGSGEDLHTFVAA 694

Query: 479 ESHHLWMQDQYPEFAVKDK-LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
           E+  L + +  PE   + K +       +     A   G+                    
Sbjct: 695 EAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLASQLGI------------------AP 736

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596
             AR   +         +  +  V+  +RR  Y++   G   YL   TS   + R    +
Sbjct: 737 DEAREHMDAYFGRFGGVRDFLRGVVERARRDGYTETMLGRRRYLPDLTSDNAQRRQMAER 796

Query: 597 LTENI-VQAISRDILCEGMKNATKN----GY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +  N  +Q  + DI+   M    +     G+   ++L VHDE+V E     Y +V  L  
Sbjct: 797 MALNAPIQGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDAVEALVR 856


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 82/515 (15%), Positives = 169/515 (32%), Gaps = 72/515 (13%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            +A  ++   L  R  +     ++  +L +  +     N+  + +   + LGI +    +
Sbjct: 341 GFALGNDEQWLVSRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR-LGISLDGIDF 399

Query: 94  --ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA- 150
             +  S L  TN   + L        +   +   EE       + KG+  + P D     
Sbjct: 400 DLLLASYLLNTNDNSNDLGKLAHEHGYD-DVQTDEEV------YGKGAKRTIPDDDQLFF 452

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H+       E  +  +    E  ++L   +D E  L  +   +   G  +D   +  + 
Sbjct: 453 QHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVDAQTLKNMG 512

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
             + +   +++E I +       +   T  L   LF    + ++  ++    + +    +
Sbjct: 513 SKLTERLTEIEEQIYQEAGEEF-NINSTKQLGKILFEKLKLPVIKKTKTGYSTAVD--VL 569

Query: 271 TQLAKDLILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            +LA    +         I KL +      L    SSD ++         ++TGR S   
Sbjct: 570 EKLAPQAPIVENILQYRQISKLQSTYIKGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVD 628

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383
              QN+P                                +R   + S  G ++  +D + 
Sbjct: 629 PNLQNIP------------------------VRLPEGRLIRQAFVPSHEGWQIFSSDYSQ 664

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ 442
           +E RVLA I G+    + F NGEDI+ +T  + F+  P  ++ +  R   K +   + Y 
Sbjct: 665 VELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVYG 724

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------- 484
               G A+      S     +Q + +       +       +                  
Sbjct: 725 ISDYGLAQRIHVSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETITHRRRYLPD 784

Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRA 512
                   +      A+   + G+A +++K A   
Sbjct: 785 INSKSFSRRSFAERTAMNTPIQGSAADIIKIAMIK 819


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 128/389 (32%), Gaps = 66/389 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T  + +      + E  L  +   +   G+ ++ + ++   + + +  K++ ++I  L  
Sbjct: 530 TIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAG 589

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNR 281
               +      L   LF   G+  +  ++    T   +L      H  + ++    +L +
Sbjct: 590 TSF-NLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAK 648

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           L S+      +  L + +    GR+         + TGR S      QN+P +       
Sbjct: 649 LQSTY-----VEGLLKVIRKETGRVHTRF-HQTLTATGRLSSSEPNLQNIPIR------- 695

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R     +     +  AD + IE R+LA ++G++  I
Sbjct: 696 -----------------LEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 738

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF    DI+  T A  F  P ++V+   R   K +   + Y     G A+         
Sbjct: 739 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEA 798

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++ + +       + D                          S +  ++      A+
Sbjct: 799 KRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAM 858

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              + G+A +L+K A     + +     D
Sbjct: 859 NTPIQGSAADLIKLAMVRIDRAMRDAQMD 887



 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A+R            KR +  ++  +R   Y     +   YL    S+  + R++  + 
Sbjct: 797 EAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERT 856

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             N  +Q  + D++   M    +          ++L VHDE++ E P     ++  L  
Sbjct: 857 AMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVR 915


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 166/489 (33%), Gaps = 68/489 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +     ++    +  K   G+DI    +    ++A     P+       
Sbjct: 317 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYLLDPADTDKDFR 373

Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           A      + KM+E  A+      + KG+  + P     A HV          K+  E   
Sbjct: 374 A------VAKMKETHAVKSDEEVYGKGAKRAVPEQEVVAEHVARKVHVLYDVKQIFEEEL 427

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E  ++    ++ E  L  +   +  +G  +D + +  + E +A   K+++++I +L    
Sbjct: 428 EKNEQYELFTELELPLARVLADMEVKGVTVDTERLRNMGEELAGRLKEMEQEIYELAGTE 487

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L + LF    + ++  ++    T   +L            IL+        
Sbjct: 488 F-NINSPKQLGVILFENLNLPVLKKTKTGYSTSADVLDKLMDHHAIIPKILHYRQLGKLN 546

Query: 289 ILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +  L + V  D  ++         ++TGR S      QN+P +              
Sbjct: 547 STYIEGLLKVVHDDSSKIHTRFN-QVLTQTGRLSSTEPNLQNIPIR-------------- 591

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   I    G  +  AD + IE RVLA IA ++  ++AF +  
Sbjct: 592 ----------LEEGRKIRQAFIPSEEGWIMYAADYSQIELRVLAHIAKDEGLVEAFQHDM 641

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T    F    D+V+   R   K +   + Y     G ++         G  ++++
Sbjct: 642 DIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFIERY 701

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            ++      +                         +  S +  ++      A+   + G+
Sbjct: 702 LESFPGVQEYMADIVKDAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQGS 761

Query: 502 ACELVKKAW 510
           A +++KKA 
Sbjct: 762 AADIIKKAM 770



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        + G    ++L VHDE++ E P      +  L   +M   
Sbjct: 758 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 817

Query: 655 PSWAKGLPLKAE 666
              A  +PLK +
Sbjct: 818 IELA--VPLKVD 827


>gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
 gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
          Length = 877

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%)

Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           + F E+  R     VE    L ++L        L D E+ L  +   +   G ++  + +
Sbjct: 440 EKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIKVKKETL 499

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       +KL ++I +L      +      L + LF    + L    +       +
Sbjct: 500 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLELPLEYTKKTKTGYSTA 558

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + + +DG++         ++TGR S
Sbjct: 559 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 617

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 618 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEREDSVLLSSD 653

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 654 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGV 713

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +             +  + +       + D                     
Sbjct: 714 VYGISDFGLSNNLGISRKGAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 773

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                S +  ++      A+   + G+A +++K A     + ++              + 
Sbjct: 774 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 825

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    V  VP+  +   K+ V   +  + +L    +  +        ++
Sbjct: 826 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/620 (17%), Positives = 205/620 (33%), Gaps = 120/620 (19%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             +   L   L ++    V  N+ F+R++    L   I     +  ++LA     P   K
Sbjct: 413 EKVLEKLRPILENKCYPKVFQNAKFDRLVL---LNQGIQLNGVVFDTMLASYVINPD--K 467

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLF---GEYCKR 165
           +  L+    ++LT +     L  +  K    +       AN+  + A+  F       KR
Sbjct: 468 SHKLSSLCKQYLTNISSQDYLELKINKQQTIADLDITQVANYCGMDAYSTFLLVKPLKKR 527

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E    + ++L    + E+ L  +   + ++G  ID++ +  L E        L+E I 
Sbjct: 528 LAEI--PILEKLF--LEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIY 583

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +              L   LF    +      + T     +H+ + +L  D  +      
Sbjct: 584 EEAKEKFNLE-SPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYLLK 642

Query: 286 GSAILKLNT-----LSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              + KL +     L   V +   R+  +      + TGR S      QN+P +      
Sbjct: 643 YRTLSKLQSTYIDNLPTLVSNQTHRIHTSFN-QSVTSTGRLSSSKPNLQNIPIRT----- 696

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                S  +R   I+     LV AD + IE R+LA ++ E   +
Sbjct: 697 -------------------ELSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLV 737

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           KA+ + +DI+  +    F+   ++++ E+R +GK +   + Y  G++             
Sbjct: 738 KAYCDCQDIHTLSAQLLFDK--EEITIEERNLGKTINFGVIYGMGSQ------------- 782

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                       ++   A      G      K   +  HQ   +
Sbjct: 783 ----------------------------RFAREAGVTPTKG------KDFIKKYHQRYKK 808

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG---D 576
           +++ L       + +G   +        R     +         S R L   +      D
Sbjct: 809 VFQFLENLKIEAITKGYVTTILG----RRRYFNFYSD-------SLRNLYGCNPDEINLD 857

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEI 632
               + + SQL+R            +Q  S DI+   M    K    Y   ++L VHDE+
Sbjct: 858 ELKYSYSDSQLLRSAANAP------IQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDEL 911

Query: 633 VSETPDTPYFSVG-TLCSLM 651
           V E P      +   +  +M
Sbjct: 912 VFEIPLEELEELQSEIKQIM 931


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/484 (16%), Positives = 155/484 (32%), Gaps = 77/484 (15%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           +  +  + L     + +W+  S           LK   +  +            +L A  
Sbjct: 353 DEKVLAEWLANP-QATKWLHDSKQTYHTLQDQGLKLDGVEHD-----------TSLAAYL 400

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGER 185
            +  + +         HV              +A  EL + L P            D E 
Sbjct: 401 LRPDVRTLGLADVVQRHVGHELSENATGPERAQAVAELVRALTPEIEAAGQAELYFDLEV 460

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L L+   +   G  +D   + +L +       +      +L      +      L+  L
Sbjct: 461 PLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQLQKVL 520

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSEAVSS 301
           F    +     ++    +  +         +        +     K    ++ L EAV  
Sbjct: 521 FETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKSTIDGLIEAVGD 580

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T    GA+ TGR S      QN+P +                          A 
Sbjct: 581 DGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRT------------------------DAG 615

Query: 362 DCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R+      G   L+ AD + IE RV+A ++ +   I+A+A+GED++    ++ F+ P
Sbjct: 616 RKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVP 675

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474
           +D+V+ E R   K +   L Y     G ++  K  A      +  + +       + D  
Sbjct: 676 VDEVTPELRRRVKALSYGLVYGLSAFGLSQQLKISAGEAKRIMDNYFERFGGVKRYLDHV 735

Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                +  S +   ++     A+   + GTA +++K A     +
Sbjct: 736 VEVAKETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDR 795

Query: 516 GVLQ 519
            + +
Sbjct: 796 EITR 799



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 101/301 (33%), Gaps = 35/301 (11%)

Query: 387 RVLAW------IAGEDWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGK 433
            ++A        +  D  I+A  +   I+         T   + + P  +    +   G+
Sbjct: 557 HLMAHREYQKMKSTIDGLIEAVGDDGRIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGR 616

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +  A     G +   T A +  ++++  +   +     E +   E  H ++  +     
Sbjct: 617 KIRAAFTVGEGYETLLT-ADYSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSR----- 670

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           V D  +      +++  +A   G++             +  G    A+R+ +        
Sbjct: 671 VFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQQLKISAG---EAKRIMDNYFERFGG 727

Query: 554 HKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILC 611
            KR +  V+  ++   Y++   G   YL    S     R    +   N  +Q  + DI+ 
Sbjct: 728 VKRYLDHVVEVAKETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADIIK 787

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL--PL 663
             M    +          ++L VHDE+V E        +  +  L+ +    A  L  PL
Sbjct: 788 LAMLRVDREITRQQLASRVLLQVHDELVVEV---APGELEQITELVEREMDAAAQLRVPL 844

Query: 664 K 664
            
Sbjct: 845 D 845


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 160/491 (32%), Gaps = 73/491 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110
              + +L DE +     +    R+      G D+         +LA        + +  K
Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDLR--GVAFDLLLATYIINPTNVSNEFK 414

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              ++ ++   +   EE       + KG+  +   +   A H           K      
Sbjct: 415 KVAMSYDYD-DVLYDEEV------YGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQ 467

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +   +L    + E  L  +   +   G  +DL  + ++ + +      L+ +I +    
Sbjct: 468 LKEQDQLTLFEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGM 527

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF    + ++  ++       +   + +L+    + +       + 
Sbjct: 528 SF-NINSPKQLGEVLFDKLSLPVIKKTKTG--YSTNADVLEKLSDAHPIIKSIMEYRTLT 584

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL       L +A  SDG++         ++TGR S      QN+P +            
Sbjct: 585 KLYSTYIEGLKKACYSDGKVHTIFN-QALTQTGRLSSIEPNLQNIPIR------------ 631

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +    G  ++ AD + IE R+LA I+  +  I+AF  
Sbjct: 632 ------------LEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKE 679

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKT 450
           GEDI+  T    F    ++++ + R   K +   + Y                 AK +  
Sbjct: 680 GEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYID 739

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLI 499
                   + Q+ ++    + F  +            +    +  ++      A+   + 
Sbjct: 740 HYLETYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQ 799

Query: 500 GTACELVKKAW 510
           GTA +++KKA 
Sbjct: 800 GTAADIIKKAM 810



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 69/193 (35%), Gaps = 27/193 (13%)

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF-----ACVVQEGGSISARRVANVPRL 549
           +D    TA ++ K +       + +  K +  G      A  + E  +I+ +        
Sbjct: 681 EDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYIDH 740

Query: 550 VMRRHKRDVHIVLPSSRRLVYSD----VKGDCSYLNTATSQLMRERTYGGKLTENI-VQA 604
            +  +      +  + +   +      +     Y+   + +    R +G +   N  +Q 
Sbjct: 741 YLETYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQG 800

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
            + DI+ + M +             ++L VHDE++ E P      +  +  L+TK     
Sbjct: 801 TAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEE---LDLMIELVTKT---M 854

Query: 659 KG-----LPLKAE 666
           +      +PLKA+
Sbjct: 855 EDVVKLQVPLKAD 867


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/520 (15%), Positives = 174/520 (33%), Gaps = 68/520 (13%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            +   D    L  R  +      L + L    V     N+   +I+    LGID+ +  +
Sbjct: 341 GFVIGDGKTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAK-AQIVGLHRLGIDLRNVDF 399

Query: 94  --ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RA 150
             +  S L  TN   + L    L  ++   +   EE       + KG+  + P D     
Sbjct: 400 DLLLASYLLNTNDNSNDLGQVALEHDY-HEVATDEEV------YGKGAKRAIPADDQVFY 452

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H+       +  +  +    +  ++    +D E  L  +   +   G +++   +  + 
Sbjct: 453 THLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNAQTLKDMG 512

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILS 266
             + +    ++  I         +   T  L   LF    + ++  ++      +  +  
Sbjct: 513 SKLTERLADIESQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEK 571

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            ++   + +D++  R  +   +      L    SSD ++         ++TGR S     
Sbjct: 572 LADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVDPN 630

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385
            QN+P                                +R   + S+ G ++  +D + +E
Sbjct: 631 LQNIP------------------------VRLPEGRLIRKAFVPSHAGWQIFSSDYSQVE 666

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ-- 442
            RVLA I G+    + F NGEDI+ +T  + F+ P D ++ +  R   K +   + Y   
Sbjct: 667 LRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNFGIVYGIS 726

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------------------ 482
             G A+      +     +Q + +       + D   A +                    
Sbjct: 727 DYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHRRRYLPDIH 786

Query: 483 ---LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                 +      A+   + G+A +++K A     + + Q
Sbjct: 787 AKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQ 826


>gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208]
          Length = 531

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             V +++    +   +   I +         +LA     PS   +   ++          
Sbjct: 22  TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 75

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E +   A + KG+  S P +   A+H+    +     ++ + A  E  ++L  + D E  
Sbjct: 76  EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 135

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +  +G  +D + +  ++  +A   K L+E I  L      +      L + LF
Sbjct: 136 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILF 194

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302
              G+  V  ++    T   +L   +      D IL            +  L +      
Sbjct: 195 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 254

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            ++         ++TGR S      QN+P +                             
Sbjct: 255 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 289

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   
Sbjct: 290 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 349

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           D+V    R   K +   + Y     G ++            + ++  +  +   +     
Sbjct: 350 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 409

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                               +  S +  ++      A+   + G+A +++KKA     + 
Sbjct: 410 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 469

Query: 517 VL 518
           ++
Sbjct: 470 LV 471



 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 451 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 503


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 136/417 (32%), Gaps = 67/417 (16%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           VE   +    L  + + E  L  +   +   G  IDL         + +    L   I  
Sbjct: 430 VEKRLDAAGLLGLMQELEMPLVPVLCRMESAGIGIDLAAFDNFLRQVKKSLDDLTASIYS 489

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      + R T      LF   G+     +        S+  +  + +D  +  L    
Sbjct: 490 LAGKEF-NIRSTQQTAQVLFDELGLKARRKTPKG-AYSTSNVVLESMRRDHDIVDLILQY 547

Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             + KL       L   V   GRL  T     A+ TGR S      QN+P          
Sbjct: 548 RTLEKLRSTYLEPLPRKVDVGGRLHTTFNQL-ATATGRLSSSNPNLQNIP---------- 596

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                           G     +R+C   S GK LV AD + IE R+LA ++ +   ++A
Sbjct: 597 --------------IKGEFGPRMRACFKPSKGKLLVAADYSQIELRILAHMSMDPNLLQA 642

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGL 457
           F   EDI+  T    F+  I +VS+++R   K +   L Y  G +               
Sbjct: 643 FGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLLYGMGPQKLSRELSISMEEAKE 702

Query: 458 DLQQFS----------QNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKD 496
            +  +           Q ++  +  + +               S +  M  Q    AV  
Sbjct: 703 FISVYFSKLDRVRDFYQQIEEKAQEQGYVTTMAGRRRLLPDINSRNTNMAQQARRTAVNT 762

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543
            + G+A +++KKA  A              VLQ+  +L       V +       RV
Sbjct: 763 VIQGSAADVIKKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARV 819


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 131/370 (35%), Gaps = 60/370 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E+ L  +   +   G  ID +   K+++ + ++ +KL  +I +       +      L
Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEKEEKLLLEIYREAGEEF-NVNSPKQL 515

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS 300
              LF   G+     ++       +   +  LA D    +       + KL +T  +A+ 
Sbjct: 516 SHILFDKMGMPTGKKTK--TGYSTAADVLESLAIDYPFVKNILEYRTLAKLISTYLDAIP 573

Query: 301 -----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
                   R+  +      + TGR S      QN+P +                      
Sbjct: 574 LLVRKETKRVHTSFN-QMVTATGRLSSSDPNLQNIPVRT--------------------- 611

Query: 356 PLGLASDCVRSCIIASNGKKL-VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +RS  +   G    + +D + +E RVLA ++G++  I+AF N EDI+  T +
Sbjct: 612 ---EEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTAS 668

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  P ++V+ EQR+  K +   + Y     G +K            ++ + +      
Sbjct: 669 EVFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIH 728

Query: 471 TFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F                      D     S +   +      A+   + G+A +++K A
Sbjct: 729 EFMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIA 788

Query: 510 WRAKHQGVLQ 519
               ++ + +
Sbjct: 789 MIQVYEKMKK 798


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 148/396 (37%), Gaps = 69/396 (17%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            + E  L  +  ++ + G+++D+  + +L     ++ + L  +I +L +    +   T  
Sbjct: 483 QNIELPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQ 542

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295
           L   LF    + +V  ++       +   + QL     + +       I KL++     L
Sbjct: 543 LGTILFDKLKLPVVKKTK--TGYSTNAEVLDQLVLFHPIIQKIIDYRMISKLDSTYGKGL 600

Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
            + V     ++  T      + TGR S      QN+P                       
Sbjct: 601 IKLVDPKTHKIYSTFN-QTVTATGRLSSSDPNLQNIP----------------------- 636

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   + S G + LV AD + IE RVLA ++G++  I  F   +DI+  T 
Sbjct: 637 -VKTEMGREIRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTA 695

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ--------------GGAKVFKTMASHCGLDL 459
           ++ FN P+D VS+EQR+  K +   L Y               G A+ +  +       +
Sbjct: 696 SEIFNVPMDAVSREQRSHAKAINFGLIYGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKV 755

Query: 460 QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            ++ +N+K+ +  + +            +  S +  +       A+   + G A +++K 
Sbjct: 756 LEYMENIKAEAKEKGYVTTIWGRRRYITEINSRNRMLVQAGERMALNTPIQGAAADIIKI 815

Query: 509 AWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           A             K + +LQ+  +L        QE
Sbjct: 816 AMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQE 851



 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMK--- 615
           I   +  +   + + G   Y+    S+       G ++  N  +Q  + DI+   M    
Sbjct: 762 IKAEAKEKGYVTTIWGRRRYITEINSRNRMLVQAGERMALNTPIQGAAADIIKIAMIKVY 821

Query: 616 -NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
               + G    ++L VHDE++ +T  T   +V  L
Sbjct: 822 DRLEREGLKSKLILQVHDELIIDTLKTEQETVMKL 856


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%)

Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
           + F E+  R     VE    L ++L        L D E+ L  +   +   G  +  + +
Sbjct: 440 EKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETL 499

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           L++Q       +KL ++I +L      +      L + LF    + L    +       +
Sbjct: 500 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLALPLEYTKKTKTGYSTA 558

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
              + +LA    + +       I K+ +     L + + +DG++         ++TGR S
Sbjct: 559 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 617

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P +                              +R   +       L+ +D
Sbjct: 618 SVDPNLQNIPAR------------------------LEQGRLIRKAFVPEWENSVLLSSD 653

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 654 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGV 713

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +             +  + +       + D                     
Sbjct: 714 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 773

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                S +  ++      A+   + G+A +++K A     + ++              + 
Sbjct: 774 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 825

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
              +    V  VP+  +   K+ V   +  + +L    +  +        ++
Sbjct: 826 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/524 (17%), Positives = 174/524 (33%), Gaps = 93/524 (17%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW------ICTSVLARTNGLP-SSLKNAC 113
           L D T   + H++        K   + I +  W        T++ A        S   A 
Sbjct: 378 LADATKPKIMHDA--------KGPELAIDAHGWSLRGLVTDTALSAYIVAPDQRSYDLAD 429

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L L + +   K E+     + F    +       T   + +   +     + D       
Sbjct: 430 LTLRYLKRELKQEDDGGQESLFGDDEVGGDGVATTSMLYAR--AVLDLAAELDSAVEAAG 487

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             RL  LS+ E  L  L   +   G  +D + +  L+   A + K+  ++   +    I 
Sbjct: 488 GDRL--LSEVELPLLHLLARMEKTGIAVDTEHLDALERHFAGQMKQAADEAYGVIGKEI- 544

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE-------GTLKSI---LSHSNITQLAKDLILNRLA 283
           +      L++ LF    +     ++         L+ +     H  +  L +   + RL 
Sbjct: 545 NLGSPKQLQVVLFDELDMPKTKRTKTGWTTDADALQQLYVKTEHPFLLALLRHRDVTRLR 604

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            +      +  L + V  DGR+  T     A+ TGR S      QN+P +          
Sbjct: 605 VT------IEGLLKTVQDDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPVRT--------- 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +   G + L+ AD + IE R++A ++ ++  I+AF
Sbjct: 649 ---------------EEGRGIRKGFVVGGGFESLMTADYSQIEMRIMAHLSEDELLIEAF 693

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +G D +  T A+ F    D VS EQRA  K M   L Y     G ++      S     
Sbjct: 694 RSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYGLAYGLSAFGLSQQLGIEPSEARGL 753

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           ++++ +       +      E+                      +   ++     A+   
Sbjct: 754 MEEYFETFGGIRDYLRSLVEEARRTGYTETIMGRRRYLPDLLSDNRQRRETAERMALNAP 813

Query: 498 LIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEG 535
           + G+A +L+K A       +       ++   + +     V  G
Sbjct: 814 IQGSAADLIKVAMLRVQAAIDEADLSSRMLLQVHDELVFEVAPG 857



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYL-NTATSQLMRERTYG 594
              AR +           +  +  ++  +RR  Y++ + G   YL +  +    R  T  
Sbjct: 747 PSEARGLMEEYFETFGGIRDYLRSLVEEARRTGYTETIMGRRRYLPDLLSDNRQRRET-A 805

Query: 595 GKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
            ++  N  +Q  + D++   M               ++L VHDE+V E       ++ +L
Sbjct: 806 ERMALNAPIQGSAADLIKVAMLRVQAAIDEADLSSRMLLQVHDELVFEVAPGEREALESL 865

Query: 648 C-SLMT 652
             + M 
Sbjct: 866 VRAQMG 871


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/540 (15%), Positives = 187/540 (34%), Gaps = 88/540 (16%)

Query: 37  WDDEPVKLWDRTEQS-----AMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             D  +K              +   D  + L ++ +  + H+   + ++     GI++  
Sbjct: 320 IYDGKIKAVSFACGDGSFFVEIDDYDNFKLLNNDKLTLIGHDLK-DFLVNISYCGIELNC 378

Query: 91  KRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPP 144
           K  + T+++        S  +    L              + +G+   +           
Sbjct: 379 K-ILDTAIMTYLLNPSESNYDISRVLKKYLKEDLQNIDDIVGKGRNKKSYDDIDKKLLVD 437

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           Y C+ A+++   +       +++E    L    IPL +       + +++   G+ +D D
Sbjct: 438 YMCSAASNLSKLKDKLMSFIKEMEMEDLLKNVEIPLIE-------VLKSMEVYGFTLDKD 490

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---- 260
           ++  + + I ++  K+ +DI         +   T  L  +LF    +  +  ++      
Sbjct: 491 VLRSISKEIDEKTDKIVKDIYDAAGYEF-NINSTKQLSEFLFDKLNLPAIKKTKTGYSTD 549

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           ++ +        +  ++I  R      +   ++     +  + R+  T +   A+ TGR 
Sbjct: 550 MEVLAELIPYNDIVGEIIEYRQLMKLKST-YIDGFIPIMDENNRVHSTFKQTVAA-TGRI 607

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P +E                             +R   ++S     ++ A
Sbjct: 608 SSTEPNLQNIPVRE------------------------EFGRRIRKAFVSSYEDGLIISA 643

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA ++ ++  I++F N EDI++ T ++ F    ++V+ E R   K +   +
Sbjct: 644 DYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFKVSKEEVTSEMRRRAKAVNFGI 703

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474
            Y     G +K  K         +  +    K    + D                     
Sbjct: 704 VYGISDYGLSKDLKISRKEAKEYIDNYFDRYKGVKNYIDSIVKFAKENGYVTTILNRRRY 763

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
             +  S +   +      A+   + G+A +++K +             K + +LQ+  +L
Sbjct: 764 IPEINSKNFNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDEL 823



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAI 605
            + V       V     +       + +    Y+    S+   +R++G ++  N  +Q  
Sbjct: 734 YKGVKNYIDSIVKFAKENGYVTTILNRR---RYIPEINSKNFNQRSFGERMAMNTPIQGS 790

Query: 606 SRDILCEGMKNA----TKNGYD--IVLTVHDEIVSET-PDTPYFSVGTLCSLM 651
           + DI+   M        + G    ++L VHDE++ +T PD        L S+M
Sbjct: 791 AADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSIM 843


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 106/598 (17%), Positives = 193/598 (32%), Gaps = 112/598 (18%)

Query: 5   FIDIETRSPQPLPKVGV----WAYAEQ-AVITLCAYAWDD-EPVKLWDRTEQSAMPSDLL 58
             D ET S   +    +    +AY E  A      + +         +  + + +   L 
Sbjct: 331 SFDTET-SDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAII--QLN 387

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +Y        V  N  ++  + K    I++                    L    +   F
Sbjct: 388 RY------KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDY-QIDKYF 440

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
              +    +       F    I                +   EY   D   T  LFK+ +
Sbjct: 441 DHKMISFTDVVKKGENFSNVDI----------------ERACEYAAEDALMTLRLFKKQL 484

Query: 179 PLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +              + E D   +   +   G ++D++L+ + +EL  +   +L   I 
Sbjct: 485 EIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIY 544

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           + T G+  +      L   LF   G+     ++    T +++L+          L+L   
Sbjct: 545 Q-TSGVEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR 603

Query: 283 ASSGSAILKLNTLSEA--VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            +       +  L E    S D R+  +    G + TGR S      QN+P +  S    
Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDS---- 658

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               +  +R   I  +G KLV  D + IE R+LA  + +   ++
Sbjct: 659 --------------------TIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVE 698

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCG 456
           AF N  DI+  T  K F    ++ +KE+R I K +   L Y  G+K         +    
Sbjct: 699 AFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGETLGIPSKEAK 755

Query: 457 LDLQQFSQNVKSTSTF----EDWEQAESH----------------HLWMQDQYPEFAVKD 496
             +  + +  KS   +    ED+     +                +  M+  Y   AV  
Sbjct: 756 QYIDSYFEAFKSVKDYLKSIEDFAHINGYVKTLLNRKRLFDFNSANAMMKAAYLREAVNT 815

Query: 497 KLIGTACELVKKAWRAKHQG---------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
              G+A +L+K A    +Q          +LQ+  +L         E  + S + +  
Sbjct: 816 LFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEVKDEFVEEITFSIKNIME 873


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 134/408 (32%), Gaps = 65/408 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E    +    +  RG  +D   + +  + +    ++L E I K       +     
Sbjct: 20  YEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAGEEF-NINSPK 78

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    ++    ++    T   +L            IL     +       + L+
Sbjct: 79  QLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTYADGLA 138

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  D R+ G       + TGR S      QN+P +                       
Sbjct: 139 NYIGDDERIHGKFN-QTITATGRISSTEPNLQNIPAR----------------------- 174

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +   G   V AD + IE RVLA ++ +   I A+   +DI+  T ++ 
Sbjct: 175 -VELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTASEV 233

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  PID+VS  QR   K +   + Y     G ++  K         + ++ +       +
Sbjct: 234 FGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKKY 293

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            +                       + +S +   ++     A+   + G+A +++K A  
Sbjct: 294 LNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAMI 353

Query: 512 AKHQG----------VLQLWKDLT-EGFACVVQEGGSISARRVANVPR 548
             +            +LQ+  +L  E     V+E   I  R + +  +
Sbjct: 354 RVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK 401



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
           +R +G ++  N  +Q  + DI+   M          K    ++L +HDE++ E  D+   
Sbjct: 327 QRNFGERVAMNSPIQGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSE-- 384

Query: 643 SVGTLCSLMTK 653
            V  +  ++T+
Sbjct: 385 -VEEVKGILTR 394


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 106/598 (17%), Positives = 191/598 (31%), Gaps = 112/598 (18%)

Query: 5   FIDIETRSPQPLPKVGV----WAYAEQ-AVITLCAYAWDD-EPVKLWDRTEQSAMPSDLL 58
             D ET S   +    +    +AY E  A      + +         +  + + +   L 
Sbjct: 331 SFDTET-SDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAII--QLN 387

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +Y        V  N  ++  + K    I++                    L    +   F
Sbjct: 388 RY------KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDY-QIDKYF 440

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
              +    +       F    I                +   EY   D   T  LFK+ +
Sbjct: 441 DHKMISFTDVVKKGENFSNVDI----------------ERACEYAAEDALMTLRLFKKQL 484

Query: 179 PLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +              + E D   +   +   G ++D++L+ + +EL  +   +L   I 
Sbjct: 485 EIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIY 544

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           + T G   +      L   LF   G+     ++    T +++L+          L+L   
Sbjct: 545 Q-TSGAEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR 603

Query: 283 ASSGSAILKLNTLSEA--VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            +       +  L E    S D R+  +    G + TGR S      QN+P +  S    
Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDSNI-- 660

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   I  +G KLV  D + IE R+LA  + +   ++
Sbjct: 661 ----------------------QIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVE 698

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCG 456
           AF N  DI+  T  K F    ++ +KE+R I K +   L Y  G+K         +    
Sbjct: 699 AFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGETLGIPSKEAK 755

Query: 457 LDLQQFSQNVKSTSTF----EDWEQAESH----------------HLWMQDQYPEFAVKD 496
             +  + +  KS   +    ED+     +                +  M+  Y   AV  
Sbjct: 756 QYIDSYFEAFKSVKDYLKSIEDFANINGYVKTLLNRKRLFDFNSANAMMKAAYLREAVNT 815

Query: 497 KLIGTACELVKKAWRAKHQG---------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
              G+A +L+K A    +Q          +LQ+  +L         E  + S + +  
Sbjct: 816 LFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEVKDEFVEEITFSIKNIME 873


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/495 (13%), Positives = 151/495 (30%), Gaps = 83/495 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
              +L+DE      +++    +   +        K      +LA      +         
Sbjct: 361 FTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYLLDTN--DTNNDIA 415

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             + H               KG+    P D            F  +  R V A   L  +
Sbjct: 416 GVAAHYGYDAIQSDEAIY-GKGAKKGLPADEED---------FFAHLARKVAAITNLTPK 465

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L              + E  L ++   +   G ++D   + +++   AQ   +++E I  
Sbjct: 466 LTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYA 525

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRL 282
                  +      L + LF   G+ ++  ++      +  +        + +D++  R 
Sbjct: 526 EAGETF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQ 584

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +   +   +  L + +  DG++         ++TGR S      QN+P +         
Sbjct: 585 IAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR--------- 633

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   +       +  +D + IE RVLA I+ +    +A
Sbjct: 634 ---------------LEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678

Query: 402 FANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           F  G+DI+ +T  + F     + V+   R   K +   + Y     G ++          
Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAQ 738

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +  + +      T+ +                          S +  ++      A+ 
Sbjct: 739 QYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAIN 798

Query: 496 DKLIGTACELVKKAW 510
             + G+A +++K A 
Sbjct: 799 TPIQGSAADILKIAM 813


>gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
 gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
          Length = 1126

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/504 (14%), Positives = 146/504 (28%), Gaps = 79/504 (15%)

Query: 81   KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            K+   +  P+  W    +      + +       A   +      +  + L+      S 
Sbjct: 612  KQLFSLVYPADSWRAARIDYAAVAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASY 671

Query: 141  DSPPYDCTRANHV----------QAWQLFGEYCKRDVEATREL--FKRLIPLSDGERDLW 188
               P     A+            +                  L   +        E  L 
Sbjct: 672  PQQPIGSAAAHGFATDDDQKALSEMLACAKAQRVLQAPLMYALMLDESYDVYCGIELPLI 731

Query: 189  LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
             +   +   G  +D D++ +    I +E   +   +       I +      L   LF +
Sbjct: 732  CVLLDMERTGLHVDTDILHEQSMAINREINHMLATLHTDIGETI-NIDSPMQLSHVLFDV 790

Query: 249  TGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
              +    + +       T    L   +       LIL+    +      L+ L   +  D
Sbjct: 791  WQLPTKGLKKTKRGYFSTNAKTLETLSKQDDRVQLILDYRERAKLKSTYLDALPAQIKPD 850

Query: 303  GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            GR+  T     A+ TGR S      QN+P +                             
Sbjct: 851  GRIHTTFNQTVAA-TGRLSSSDPNLQNIPTRS------------------------QLGH 885

Query: 363  CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             VR     ++    +  D + IE R+LA ++ +   I AF +G D +  T ++ F    D
Sbjct: 886  RVRKAFTVADDSVFLTCDYSQIELRLLAHLSQDPHLIAAFNSGADFHAATASRIFGIEQD 945

Query: 423  KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
             V+ + R+  K +   + Y     G A   K   +     + ++ +       F D   A
Sbjct: 946  AVTPQLRSRAKAVNFGIVYGQQAFGLASSLKISRATAKEMIDKYFEVYPCVREFLDESVA 1005

Query: 479  ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG- 516
             +                      +  ++      A+   + G+A +++K A     +  
Sbjct: 1006 FARAHGYVPTMYGRKRHIEHINASNFQLRSFAERTAMNHPMQGSAADIIKLAMIEVEKRL 1065

Query: 517  ---------VLQLWKDLTEGFACV 531
                     VLQ+  +L    A  
Sbjct: 1066 RASSLRAHLVLQIHDELDFEVATA 1089


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 169/502 (33%), Gaps = 62/502 (12%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
            T+++A  S++ +   +     V +++    +   +   I +         +LA     P
Sbjct: 346 FTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNP 402

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           S   +   ++          E +   A + KG+  S P +   A H+    +     ++ 
Sbjct: 403 SDSIDDFTSVAIRHD---YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKR 459

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +    E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  
Sbjct: 460 LVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 519

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L + LF   G+  V  ++    T   +L   +      D IL    
Sbjct: 520 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 578

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                   +  L +       ++         ++TGR S      QN+P +         
Sbjct: 579 LGKIQSTYIEGLLKVTDKETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------- 628

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   + S  G K+  AD + +E RVLA I+ ++  I A
Sbjct: 629 ---------------LEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYA 673

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +  DI+  T    F+   D+V    R   K +   + Y     G ++           
Sbjct: 674 FKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKD 733

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            + ++  +  +   +                         +  S +  ++      A+  
Sbjct: 734 FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNT 793

Query: 497 KLIGTACELVKKAWRAKHQGVL 518
            + G+A +++KKA     + ++
Sbjct: 794 PIQGSAADIIKKAMILMSERLV 815



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 160/491 (32%), Gaps = 73/491 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110
              + +L DE +     +    R+      G D+         +LA        + +  K
Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDLR--GVAFDLLLATYIINPTNVSNEFK 414

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              ++ ++   +   EE       + KG+  +   +   A H           K      
Sbjct: 415 KVAMSYDYD-DVLYDEEV------YGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQ 467

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +   +L    + E  L  +   +   G  +DL  + ++ + +      L+ +I +    
Sbjct: 468 LKEQDQLTLYEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGM 527

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF    + ++  ++       +   + +L+    + +       + 
Sbjct: 528 SF-NINSPKQLGEVLFDKLSLPVIKKTKTG--YSTNADVLEKLSDAHPIIKSIMEYRTLT 584

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL       L +A  SDG++         ++TGR S      QN+P +            
Sbjct: 585 KLYSTYIEGLKKACYSDGKVHTIFN-QALTQTGRLSSIEPNLQNIPIR------------ 631

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +    G  ++ AD + IE R+LA I+  +  I+AF  
Sbjct: 632 ------------LEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKE 679

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKT 450
           GEDI+  T    F    ++++ + R   K +   + Y                 AK +  
Sbjct: 680 GEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYID 739

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLI 499
                   + Q+ ++    + F  +            +    +  ++      A+   + 
Sbjct: 740 HYLKTYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQ 799

Query: 500 GTACELVKKAW 510
           GTA +++KKA 
Sbjct: 800 GTAADIIKKAM 810



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 70/193 (36%), Gaps = 27/193 (13%)

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF-----ACVVQEGGSISARRVANVPRL 549
           +D    TA ++ K +       + +  K +  G      A  + E  +I+ +        
Sbjct: 681 EDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYIDH 740

Query: 550 VMRRHKRDVHIVLPSSRRLVYSD----VKGDCSYLNTATSQLMRERTYGGKLTENI-VQA 604
            ++ +      +  + +   +      +     Y+   + +    R +G +   N  +Q 
Sbjct: 741 YLKTYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQG 800

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
            + DI+ + M +             ++L VHDE++ E P      +  +  L+TK     
Sbjct: 801 TAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEE---LDLMIELVTKT---M 854

Query: 659 KG-----LPLKAE 666
           +      +PLKA+
Sbjct: 855 EDVVKLQVPLKAD 867


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/599 (15%), Positives = 185/599 (30%), Gaps = 113/599 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60
           ID ET     L             I   ++A   +     D + ++ +  +     +   
Sbjct: 364 IDFETTGLDTLTD----------EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKLVFDT 413

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L  E +  + HN  +E  + +    ID         +++A     PS  +     L  S 
Sbjct: 414 LAKEDIKIIGHNLKYEYKMMRA---IDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALS- 469

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLI 178
                             +I            +   +L    EY   D + T   ++   
Sbjct: 470 -------------YLSYNTIKYSDITDNAKKTLLDVELKDVVEYACEDADITFRFYEYFA 516

Query: 179 PLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           PL +           E  L  +   +   G  I  + +  L E  A   +K    I +  
Sbjct: 517 PLLNTYNLEDLFFNVEMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKIYEKA 576

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLA 283
                + +    L   LF    I+    ++ T         + +LA+     + +L    
Sbjct: 577 GEEF-NLQSPKQLEYILFEKLKINSTKKTK-TGAYSTDEEVLRELAQREKIAEYMLTYRK 634

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S      L+     V     R+  +      + TGR S      QN+P +         
Sbjct: 635 YSKLKNTYLDVFPTLVHKKTNRIHASFN-QTVTATGRLSSSEPNLQNIPAR--------- 684

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                          G     +R+  IA  G  L+ AD + IE R+LA  + +   ++AF
Sbjct: 685 ---------------GDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAF 729

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            N +DI+  T  K ++   + V+   R   K++  ++ Y     G +K            
Sbjct: 730 KNNDDIHRKTAMKIYSVSKEHVTPSMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDF 789

Query: 459 LQQFSQNVKSTSTFEDW----------------------EQAESHHLWMQDQYPEFAVKD 496
           ++ +         F +                       +   S +  ++++    A+  
Sbjct: 790 IKGYFSTYSQVKPFCEKVIEDVKAKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNT 849

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
            + G+A +++K A  A H+           V+Q+  +L    +    +      + +  
Sbjct: 850 LIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKEIME 908



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650
              ++Q  + D++   M    K          IV+ VHDE+V E  +       T+   +
Sbjct: 847 LNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKEI 906

Query: 651 M 651
           M
Sbjct: 907 M 907


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
          Length = 881

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/495 (13%), Positives = 151/495 (30%), Gaps = 83/495 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
              +L+DE      +++    +   +        K      +LA      +         
Sbjct: 361 FTDWLKDEKRKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYLLDTN--DTNNDIA 415

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             + H               KG+    P D            F  +  R V A   L  +
Sbjct: 416 GVAAHYGYDAIQSDEAIY-GKGAKKGLPADEED---------FFAHLARKVAAITNLTPK 465

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L              + E  L ++   +   G ++D   + +++   AQ   +++E I  
Sbjct: 466 LTEELAAKNQTALFEEMELPLSMILAEMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYA 525

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRL 282
                  +      L + LF   G+ ++  ++      +  +        + +D++  R 
Sbjct: 526 EAGETF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQ 584

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +   +   +  L + +  DG++         ++TGR S      QN+P +         
Sbjct: 585 IAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR--------- 633

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   +       +  +D + IE RVLA I+ +    +A
Sbjct: 634 ---------------LEEGRKIREAFVPRETDWVIYSSDYSQIELRVLAHISDDTHLKEA 678

Query: 402 FANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           F  G+DI+ +T  + F     + V+   R   K +   + Y     G ++          
Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAQ 738

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +  + +      T+ +                          S +  ++      A+ 
Sbjct: 739 QYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAIN 798

Query: 496 DKLIGTACELVKKAW 510
             + G+A +++K A 
Sbjct: 799 TPIQGSAADILKIAM 813


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes str. 4b F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
          Length = 875

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 169/502 (33%), Gaps = 62/502 (12%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
            T+++A  S++ +   +     V +++    +   +   I +         +LA     P
Sbjct: 346 FTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNP 402

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           S   +   ++          E +   A + KG+  S P +   A H+    +     ++ 
Sbjct: 403 SDSIDDFTSVAIRHD---YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKR 459

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +    E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  
Sbjct: 460 LVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 519

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L + LF   G+  V  ++    T   +L   +      D IL    
Sbjct: 520 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 578

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                   +  L +       ++         ++TGR S      QN+P +         
Sbjct: 579 LGKIQSTYIEGLLKVTDKETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------- 628

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   + S  G K+  AD + +E RVLA I+ ++  I A
Sbjct: 629 ---------------LEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYA 673

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +  DI+  T    F+   D+V    R   K +   + Y     G ++           
Sbjct: 674 FKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKD 733

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            + ++  +  +   +                         +  S +  ++      A+  
Sbjct: 734 FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNT 793

Query: 497 KLIGTACELVKKAWRAKHQGVL 518
            + G+A +++KKA     + ++
Sbjct: 794 PIQGSAADIIKKAMILMSERLV 815



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/536 (15%), Positives = 161/536 (30%), Gaps = 78/536 (14%)

Query: 54  PSDLLQY--------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           PS L +         L D     V HN+     + +         +     + LA     
Sbjct: 378 PSQLDEADENAFATWLADPAKPKVLHNAK---GVMRVFAEHGWTVEGVSMDTALAAYLVK 434

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P     A  AL+      ++E       +   G+ +    D           L   + +R
Sbjct: 435 PGRRSFALDALSLEYLGRELEPAATADGQLAFGADEGAEADALMVQARAILDLGEAFGER 494

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E       R     D E     L   +   G   D   +  ++++ A   ++  ++  
Sbjct: 495 LKEVGSADLLR-----DMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQQAVKEAH 549

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                   +      L+  LF   G+     ++    +            D  L  +   
Sbjct: 550 AAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLR 608

Query: 286 GSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                KL      L + +++DGR+  T     A+ TGR S      QN+P +        
Sbjct: 609 HREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------- 660

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +   G + L+ AD + IE RV+A ++ ++  I+
Sbjct: 661 -----------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIE 703

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +GED++ T  ++ F      V  E R   K M   L Y     G ++     A    
Sbjct: 704 AFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEAR 763

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             +  + +       +      E+                      +   ++     A+ 
Sbjct: 764 ALMDTYFERFGGVRDYLRRAVDEARATGYTETLFGRRRYLPDLNSDNRQRRETAERMALN 823

Query: 496 DKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVAN 545
             + GTA ++VK A     + +       ++   + +     +  G       +  
Sbjct: 824 APIQGTAADIVKIAMLNVDRALQEANLKSRMLLQVHDEIVLEIAPGERAKTEELVR 879


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/495 (13%), Positives = 151/495 (30%), Gaps = 83/495 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
              +L+DE      +++    +   +        K      +LA      +         
Sbjct: 361 FTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYLLDTN--DTNNDIA 415

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             + H               KG+    P D            F  +  R V A   L  +
Sbjct: 416 GVAAHYGYDAIQSDEAIY-GKGAKKGLPADEED---------FFAHLARKVAAITNLTPK 465

Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L              + E  L ++   +   G ++D   + +++   AQ   +++E I  
Sbjct: 466 LTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYA 525

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRL 282
                  +      L + LF   G+ ++  ++      +  +        + +D++  R 
Sbjct: 526 EAGETF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQ 584

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +   +   +  L + +  DG++         ++TGR S      QN+P +         
Sbjct: 585 IAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR--------- 633

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   +       +  +D + IE RVLA I+ +    +A
Sbjct: 634 ---------------LEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678

Query: 402 FANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           F  G+DI+ +T  + F     + V+   R   K +   + Y     G ++          
Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAQ 738

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             +  + +      T+ +                          S +  ++      A+ 
Sbjct: 739 QYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAIN 798

Query: 496 DKLIGTACELVKKAW 510
             + G+A +++K A 
Sbjct: 799 TPIQGSAADILKIAM 813


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/515 (16%), Positives = 174/515 (33%), Gaps = 95/515 (18%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           +    ++ + +N+       K + G+ +    +    ++A     P+  K     L   E
Sbjct: 349 ILSSEILKIIYNAKEALKKLKNS-GLKLSPP-YFDLMIVAYLIN-PNRGKYNIDELIL-E 404

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           +  K  E    I  +                    ++L+ +  K   E   E        
Sbjct: 405 YTGKFYENAENINFY-------------------MFELYEKLNKELKEKELENL-----Y 440

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E  L  +   + + G +++++ +  L + I+ E  K+ E I  +      +      
Sbjct: 441 FDIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGTEF-NINSPKQ 499

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295
           L   L+   G+      +           + +LA    L     +   + KL T     L
Sbjct: 500 LAEVLYDRLGLKTRKRGKK--ARSTEMEVLEELAIQHELPHEVINYRTLNKLLTGYLIPL 557

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + ++ + +   T      + TGR        QN+P                        
Sbjct: 558 RDYINPETKRIHTKWSQTVAGTGRIVSSEPNLQNIP------------------------ 593

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
             G  ++ +R   I  NG   + AD + IE R+LA ++ +   IKAF +G+DI+  T ++
Sbjct: 594 VKGEWAEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASE 653

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P + V+ E R I K +   + Y     G ++  K         ++ +         
Sbjct: 654 IFSIPENAVTDEHRRIAKTVNFGISYGISPFGLSESIKIPYEKAEELIELYFLRYPMVRK 713

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F +                       +  S + +++ Q    AV  ++ GTA +++K A 
Sbjct: 714 FIEETISFAQKNGYVRTLFGRIRPLPEINSPNQFLRMQSERMAVNARVQGTAADIIKIAM 773

Query: 511 RAKH----------QGVLQLWKDLTEGFACVVQEG 535
              +          + +LQ+  ++       V E 
Sbjct: 774 IRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIEK 808


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 161/538 (29%), Gaps = 75/538 (13%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D TE            L D     V HN+     +F +        +     + LA    
Sbjct: 376 DPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEHGW---TIEGVTMDTALAAYLV 432

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P        AL       ++    A   +   G+ +    D           L   +  
Sbjct: 433 KPGRRSFDLDALTLEYLGRELAPPAAADGQLAFGADEEAEADALMVQARAILDLGEAFTG 492

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           R  E           L D E     L   +   G   D   +  ++++ A   ++   + 
Sbjct: 493 RLKEVGAADL-----LGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQQAVREA 547

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +      L+  LF   G+     ++    +            +  L  +  
Sbjct: 548 HAAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENELPVIML 606

Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                 KL      L + +++DGR+  T     A+ TGR S      QN+P +       
Sbjct: 607 RHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------ 659

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G + L+ AD + IE RV+A ++ +   I
Sbjct: 660 ------------------DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDAGLI 701

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +GED++ T  ++ F      V  E R   K M   L Y     G ++     A+  
Sbjct: 702 EAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAAEA 761

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              ++ + +       +      E+                      +   ++     A+
Sbjct: 762 RTLMEAYFERFGGVRDYLRRVVEEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMAL 821

Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              + GTA ++VK A               + +LQ+  ++    A   +E      RR
Sbjct: 822 NAPIQGTAADIVKIAMLRVGEALRAAGLASRMLLQVHDEIVLEIAPGERERVEALLRR 879


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/486 (15%), Positives = 155/486 (31%), Gaps = 61/486 (12%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S +   L D  +     +S    +   + LGI + +  +    + +          +   
Sbjct: 365 SKIKAILEDPKIKINVFDSKRTYVGLHR-LGIKLTAVNF-DILLQSYLLDT----NDNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L    H    +        + KG+  + P      NH+        +  + ++      
Sbjct: 419 DLGQLAHEHDYDAIDTDDDVYGKGAKRAVPEQTELFNHLARKLAAINFLGKQLDQELVKN 478

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           ++     D E  L ++   +   G ++D + + ++Q    +   +++ +I         +
Sbjct: 479 EQNNLYWDIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEAGEEF-N 537

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L + LF    + ++  ++    T   +L          D ILN    S      
Sbjct: 538 LNSPKQLGVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPIIDNILNYRTLSKIKSTY 597

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L + + +      T      ++TGR S      QN+P                    
Sbjct: 598 VDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNIP-------------------- 637

Query: 352 TIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   + A  G  ++ +D + IE RVLA I G+    +AF NGEDI+ 
Sbjct: 638 ----VRIEEGRKIRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHA 693

Query: 411 TTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
           TT  K F      +V+   R   K +   + Y     G ++            ++ + + 
Sbjct: 694 TTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRKDAKKFIETYFKE 753

Query: 466 VKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACE 504
                 + D     +                         ++      A+   + G+A +
Sbjct: 754 FPGVKKYIDESVQLAKEQGYVETIAHRRRYLPDINSSSFNLRSFAERTAMNTPIQGSAAD 813

Query: 505 LVKKAW 510
           ++K A 
Sbjct: 814 IIKIAM 819



 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M +             ++L VHDE++ E PD     +  L 
Sbjct: 807 IQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEMTLMKELV 859


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/533 (17%), Positives = 183/533 (34%), Gaps = 101/533 (18%)

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           ++ + +  V+   HN  ++  + +    +++  +++  T +LA        +    LAL 
Sbjct: 372 IEAIFNHFVI--GHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDLALR 428

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE----- 172
              + T   E         K   +    +  +A          +Y   D   T       
Sbjct: 429 LFNYETLHFES------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYF 473

Query: 173 LFKRLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L     PL +     E D   +   + + G ++D + +  L +    E K L E+I  L 
Sbjct: 474 LKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLC 533

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILN 280
           +    +      +   LF    +      +    T + +L      H  I ++     L 
Sbjct: 534 EDRF-NLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELA 592

Query: 281 RLASSG-SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           +L S+    +LKL         + R+  +    G + TGR S      QN+P        
Sbjct: 593 KLYSTYCEPLLKL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------ 641

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                             G  +   +SC +A +G   +  D + IE R+LA  + ++  +
Sbjct: 642 ------------------GQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
            AFAN EDI+  T    F     + + E R++ K +   L Y  G    ++  K  A+  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLA 739

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495
              ++++ +N  S   + +  + E+                            Y   ++ 
Sbjct: 740 KSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESIN 799

Query: 496 DKLIGTACELVKKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
             L G+A +++K A    ++        +LQ+  +L       + E      R
Sbjct: 800 SILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDE 631
           G   Y +   ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE
Sbjct: 775 GRKRYFDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDE 834

Query: 632 IVSETPDTPYFS-VGTLCSLM 651
           ++ E  D    + V     +M
Sbjct: 835 LIFEVKDDLCENFVKKTRDIM 855


>gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
 gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
          Length = 886

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/524 (15%), Positives = 166/524 (31%), Gaps = 77/524 (14%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           Y E     L  +   D    L  R       + L + L D  V     N+  + +   + 
Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR- 389

Query: 84  LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
           LG+D+    +    +LA          + L     A ++   +   EE       + KG+
Sbjct: 390 LGVDLAGVDF--DLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 440

Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
             + P D      H+          K  +       ++L    D ER L  +   +   G
Sbjct: 441 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 500

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D   + ++   + +   +L++ I +       +      L + LF    + ++  ++
Sbjct: 501 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 559

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313
               + +    + +LA    + +   +   I KL +     L + +  D +   T     
Sbjct: 560 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 617

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372
            + TGR S      QN+P                                +R     S  
Sbjct: 618 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 653

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431
           G K+  +D + +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R  
Sbjct: 654 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 713

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472
            K +   + Y     G A+            +Q + +       +               
Sbjct: 714 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 773

Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                     +  +     +      A+   + G+A +++K A 
Sbjct: 774 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 817


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 169/502 (33%), Gaps = 62/502 (12%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
            T+++A  S++ +   +     V +++    +   +   I +         +LA     P
Sbjct: 165 FTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNP 221

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           S   +   ++          E +   A + KG+  S P +   A H+    +     ++ 
Sbjct: 222 SDSIDDFTSVAIRHD---YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKR 278

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +    E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  
Sbjct: 279 LVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 338

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L + LF   G+  V  ++    T   +L   +      D IL    
Sbjct: 339 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 397

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                   +  L +       ++         ++TGR S      QN+P +         
Sbjct: 398 LGKIQSTYIEGLLKVTDKETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------- 447

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   + S  G K+  AD + +E RVLA I+ ++  I A
Sbjct: 448 ---------------LEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYA 492

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +  DI+  T    F+   D+V    R   K +   + Y     G ++           
Sbjct: 493 FKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKD 552

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            + ++  +  +   +                         +  S +  ++      A+  
Sbjct: 553 FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNT 612

Query: 497 KLIGTACELVKKAWRAKHQGVL 518
            + G+A +++KKA     + ++
Sbjct: 613 PIQGSAADIIKKAMILMSERLV 634



 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 614 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 666


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 135/384 (35%), Gaps = 65/384 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L  +   +   G++++ + + +  + I  +  KL+  I ++      +     
Sbjct: 448 YENIEIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIAGEWF-NINSPK 506

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + +V  ++    T   +L           LIL+    +         L 
Sbjct: 507 QLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELYDKHEIVPLILDYRMYTKILTTYCQGLM 566

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           +A++S  GR+       G + TGR +      QN+P +                      
Sbjct: 567 QAINSVTGRVHSNFIQTG-TATGRLASAESNLQNIPVKY--------------------- 604

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T A+
Sbjct: 605 ---DEGRLIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAE 661

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F   + +V+   R+  K +   + Y     G +K  K         + ++ +       
Sbjct: 662 IFGVDVSQVTPTMRSQAKAVNFGIIYGISDYGLSKDIKISRKEAAEFINRYFEKYPKVKE 721

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D                      +  +S +  +++     A+   + G+A +++K A 
Sbjct: 722 YLDNVVKFARENGFVLTLFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAM 781

Query: 511 RA----------KHQGVLQLWKDL 524
                       K + +LQ+  +L
Sbjct: 782 IRVYRRLKEENLKSRIILQVHDEL 805



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 10/127 (7%)

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
            + ++  +    R       V       V     +   L   + K    Y+    S    
Sbjct: 699 KISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTLFNRK---RYIKDIKSTNKN 755

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
            R Y  ++  N  +Q  + DI+   M               I+L VHDE++ E+P     
Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYRRLKEENLKSRIILQVHDELLIESPYEEKE 815

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 816 IVKEIVK 822


>gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 857

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 139/397 (35%), Gaps = 76/397 (19%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L      +   G+ ++ D + +++  +++E   L+ +I  L      +   T  L 
Sbjct: 458 IESPLERTLAVMELNGFTVNRDRLEEMKADLSREADALETEIYDLAGESF-NINSTKQLG 516

Query: 243 MYLFLITGIDLVDMSE-------GTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNT 294
           + LF   G+ ++  ++         L+ +   S  + ++ K   L +L S+      L+ 
Sbjct: 517 VILFEKMGLPVIKKTKTGYSTDSSVLEELAEQSEIVPKILKFRALKKLISTY-----LDG 571

Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L   +     R+  +      + TGR S      QN+P +                    
Sbjct: 572 LEPLIDEKTERVYTSFN-QMVTATGRLSSSDPNLQNIPIRT------------------- 611

Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +RS  +   G   LV  D + IE R+LA ++ +   I  F + +DI+  T
Sbjct: 612 -----EQGRKIRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRT 666

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            ++ F  P D+V+ E R+  K +   + Y     G ++      +     ++ +     +
Sbjct: 667 ASEVFGVPFDEVTGELRSHAKAVNFGIIYGISDFGLSRNLGITRNRAKEYIESYFARYST 726

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + +                       +  S +   +      A+   + G+A +++K
Sbjct: 727 IHDYMNGLVEEARRTGESRTMFGRLRTLPEISSKNFMRRSFAERTAMNTPIQGSAADIIK 786

Query: 508 KAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
            A  A            + ++Q+  +L        +E
Sbjct: 787 LAMNAVQKKLEALNLHSRMLVQVHDELVLEVPAQEKE 823



 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKNGYDIVLT------VHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M    K    + L       VHDE+V E P     ++   L   M + 
Sbjct: 777 IQGSAADIIKLAMNAVQKKLEALNLHSRMLVQVHDELVLEVPAQEKETIEKLLKETMEEV 836

Query: 655 PSWAKGLPLKAE 666
            +    +PL A+
Sbjct: 837 VT--LSVPLIAD 846


>gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
 gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
          Length = 875

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/485 (15%), Positives = 154/485 (31%), Gaps = 60/485 (12%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L ++L D T +    +S   +   K+  GI +    +    +LA     P+   +   
Sbjct: 354 DTLRRWLEDATKIKYMSDSKAAQASLKRA-GIQLAGVDF--DLLLASYINNPALSGDDIA 410

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L  +  L   +          KG+  + P     A HV          +  +EA  +  
Sbjct: 411 TL--ARELGYYDVQADEAVY-GKGAKRAIPDLDQLAQHVSRKAFAVWSLQPKLEALLKDN 467

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           ++     + E  L  +   +   G  ++   + K+ + +  +   ++++I         +
Sbjct: 468 EQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQELNDKLVVIEQEIYAEAGETF-N 526

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L + LF   G+ ++  ++    T   +L          + IL            
Sbjct: 527 INSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQSEHAIIEHILLYRQLGKLQSTY 586

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L + +        T      + TGR S      QN+P +                  
Sbjct: 587 IEGLLKEIHESNSKVHTRFQQALTATGRLSSTDPNLQNIPIR------------------ 628

Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   + S     L  AD + IE RVLA ++ +   ++AF  G D++ 
Sbjct: 629 ------LEEGRKIRQAFVPSKEDWILFSADYSQIELRVLAHMSEDQNLVEAFREGMDVHT 682

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
            T    F+   D+V    R   K +   + Y     G ++            ++++  + 
Sbjct: 683 RTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQNLDITRKEAANFIEKYFASF 742

Query: 467 KSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                + D                          S +  ++      A+   + G+A ++
Sbjct: 743 PGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADI 802

Query: 506 VKKAW 510
           +KKA 
Sbjct: 803 IKKAM 807


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 878

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/573 (14%), Positives = 177/573 (30%), Gaps = 78/573 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW ++   ++  T    +  DL +    + +        F+R  +    LG+D+P+
Sbjct: 336 IIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGVDLPA 390

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   S LA+                         +     A + KG   + P      
Sbjct: 391 PAF--DSRLAKYLLSTVDDNELSTIARLYTDYVLDSD----EAVYGKGVKRAVPKKAVLL 444

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +H+    +   + ++ +       ++   L D E+ L  +   +   G  +    + +++
Sbjct: 445 SHLARKIVVLNHSEKVMLDKLTEHQQASLLFDMEQPLANVLAKMEIAGISVKKATLQEME 504

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                   +L ++I  L      +      L   LF    +      +       +   +
Sbjct: 505 ASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVL 563

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + +  DG++         ++TGR S    
Sbjct: 564 ERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTRY-LQDLTQTGRLSSVDP 622

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P                                +R   +     + L+ +D + I
Sbjct: 623 NLQNIP------------------------VRLEQGRLIRKAFVPETEDEVLLSSDYSQI 658

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 659 ELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGIVYGI 718

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQA 478
              G A             ++ + +       + +                         
Sbjct: 719 SDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDI 778

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            S +  ++      A+   + G+A +++K A     + ++              +    +
Sbjct: 779 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVD--------GQFKTKMLLQV 830

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +  VP+  +   K  V   + S+  L   
Sbjct: 831 HDEIILQVPKNELEAVKTLVKETMESAIDLSVP 863


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 139/396 (35%), Gaps = 71/396 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E+ L  +   +   G  ID +   K+++ + ++ +KL  +I +       +      L
Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEKEEKLLLEIYREAGEEF-NVNSPKQL 515

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS 300
              LF   G+     ++       +   +  LA D    +       + KL +T  +A+ 
Sbjct: 516 SHILFDKMGMPTGKKTK--TGYSTAADVLENLAIDYPFVKNILEYRTLAKLISTYLDAIP 573

Query: 301 -----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
                   R+  +      + TGR S      QN+P +                      
Sbjct: 574 LLVRKETKRVHTSFN-QMVTATGRLSSSDPNLQNIPVRT--------------------- 611

Query: 356 PLGLASDCVRSCIIASNGKKL-VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +RS  +   G    + +D + +E RVLA ++G++  I+AF N EDI+  T +
Sbjct: 612 ---EEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTAS 668

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  P ++V+ EQR+  K +   + Y     G +K            ++ + +      
Sbjct: 669 EVFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIH 728

Query: 471 TFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F                      D     S +   +      A+   + G+A +++K A
Sbjct: 729 EFMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIA 788

Query: 510 WRA----------KHQGVLQLWKDLT-EGFACVVQE 534
                        K + +LQ+  +L  E     V+E
Sbjct: 789 MIQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVEE 824


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 416

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 124/374 (33%), Gaps = 57/374 (15%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E  ++L   +  ER L ++   +   G ++D + +  +Q  + +   +L+++I     
Sbjct: 3   ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG 62

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      L + LF    + ++  ++    T   +L          D IL     + 
Sbjct: 63  EEF-NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 121

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                +  L + VS  DG+          + TGR S      QN+P              
Sbjct: 122 IQSTYIEGLLKVVSKKDGKAHTRYT-QTLTSTGRLSSVDPNLQNIP-------------- 166

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S  G ++  +D + IE RVLA I+ +    +AF  
Sbjct: 167 ----------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKE 216

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+ +T  + FN    D+V+   R   K +   + Y     G ++            +
Sbjct: 217 GMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFI 276

Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498
             +         + +                         +S +  ++      A+   +
Sbjct: 277 DTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPI 336

Query: 499 IGTACELVKKAWRA 512
            G+A +++K A   
Sbjct: 337 QGSAADIIKVAMIN 350


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/576 (17%), Positives = 180/576 (31%), Gaps = 90/576 (15%)

Query: 16  LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNS 73
           L  VG   AY   A       A  D   +  D           L   L D       H +
Sbjct: 345 LAVVGTHLAYDADATALAIVSA--DGEGRYIDTATLDPEDEAALASWLADPGPPKALHEA 402

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKAL 131
               +      G           + LA     P   S     L+L +        E    
Sbjct: 403 K---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLR-RELRAENPEQ 458

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                    D       +   ++A  +       D E  R     L  LS  E  +  + 
Sbjct: 459 QQLSLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSL--LSGMELPVQRVL 516

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             + + G  +DL+L+ +LQ   A   +   E    +    I +      L+  LF    +
Sbjct: 517 AGMENAGIAVDLELLTELQSDFAHLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELEM 575

Query: 252 DLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                ++                  H  +  L       RL  +      ++ L  +V+S
Sbjct: 576 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAS 629

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T     A+ TGR S      QN+P +  +                         
Sbjct: 630 DGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------------------G 664

Query: 362 DCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +  +G  +L+ AD + IE R++A ++ ++  I+AF  GED++    ++AF  P
Sbjct: 665 RRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVP 724

Query: 421 IDKVSKEQRAIGKVMELALGYQ---GGAKV-FKTMASHCGLDLQQFSQNVKSTSTF---- 472
           I++V+ E R   K M   L Y     G     K         ++Q+         +    
Sbjct: 725 IEEVTAELRRRVKAMSYGLAYGLSAYGLSAQLKISTEEAKDQMEQYFARFGGVRDYLMAV 784

Query: 473 -----------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                + +S +  +++     A+   + G+A +++K A     +
Sbjct: 785 VEQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIETDK 844

Query: 516 GV----------LQLWKDLTEGFACVVQEGGSISAR 541
            +          LQ+  +L    A   +E     AR
Sbjct: 845 AIKDAGLSSRILLQVHDELLFEVAAGEREQLEALAR 880



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    K     G    I+L VHDE++ E        +  L  
Sbjct: 827 IQGSAADIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALAR 880


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 878

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/524 (14%), Positives = 162/524 (30%), Gaps = 76/524 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW ++   ++  T    +  DL +    + +        F+R  +    LG+D+P+
Sbjct: 336 IIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGVDLPA 390

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   S LA+                         +     A + KG   + P      
Sbjct: 391 PAF--DSRLAKYLLSTVDDNELSTIARLYTDYVLDSD----EAVYGKGVKRAVPKKAVLL 444

Query: 151 NHVQAWQL---FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           +H+    +   + E    D     +    L    D E+ L  +   +   G  +    + 
Sbjct: 445 SHLARKIVVLNYSEKVMLDKLTEHQQASLLF---DMEQPLANVLAKMEIAGISVKKATLQ 501

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           +++        +L ++I  L      +      L   LF    +      +       + 
Sbjct: 502 EMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAV 560

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA    +         I KL +     L + +  DG++         ++TGR S 
Sbjct: 561 DVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTRY-LQDLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P                                +R   +     + L+ +D 
Sbjct: 620 VDPNLQNIP------------------------VRLEQGRLIRKAFVPETEDEVLLSSDY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440
           + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R   K +   + 
Sbjct: 656 SQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGIV 715

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A             ++ + +       + +                      
Sbjct: 716 YGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRREL 775

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               S +  ++      A+   + G+A +++K A     + ++ 
Sbjct: 776 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVD 819


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/507 (16%), Positives = 159/507 (31%), Gaps = 86/507 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112
             + Q+L D        +    ++      GI +    +    +LA     P+   L  +
Sbjct: 387 EPIRQWLSDADKEKWIFDKHRAQLALS-WKGIKLRGVSF--DVLLASYLLDPTESTLTLS 443

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--- 169
            +A  +S      +E       F KG+    P +     ++    L  E   R V     
Sbjct: 444 GVAGKYSVASLPADE-----QVFGKGAKFKLPEEHLLGENLS---LKAERVSRLVPVLKA 495

Query: 170 ------TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                  +EL+  L      E  L  +   +   G ++D + + +L   I+ + K + + 
Sbjct: 496 KLEESGMQELYYEL------EHPLAGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDR 549

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----I 278
           I +       +      L   LF    + +   ++           + +LA        I
Sbjct: 550 IYEQAGMTF-NINSPKQLGEVLFEKLQLPVQKKTKTG--YSTDAEVLEKLAPYHDIVGDI 606

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L+    +      +  L + V  D     T      + TGR S      QN+P +     
Sbjct: 607 LHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIR----- 661

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   + S  G  ++ AD + IE RVLA I+G++ 
Sbjct: 662 -------------------LEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AF    DI+  T    F     +V    R   K +   + Y     G ++       
Sbjct: 703 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 762

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++Q+    +    + D                       +  + +  ++      
Sbjct: 763 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 822

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519
           A+   + GTA +++K A     + + Q
Sbjct: 823 AMNTPIQGTAADIIKLAMVQMDERLKQ 849



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 111/318 (34%), Gaps = 49/318 (15%)

Query: 392 IAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQGGA 445
            + +   ++  A   DI     +  T AK  +T ++ + KE R   GKV      Y+   
Sbjct: 586 YSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTY---YRQTI 642

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                ++S          +  +     + +  ++     +   Y +  ++     +  E 
Sbjct: 643 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 702

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN--VPRLVMRRHKRDVHIVLP 563
           +K+A+        +   D+       V      SA+ V    V  +      +++ I   
Sbjct: 703 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 762

Query: 564 SSRRLV---YSDVKGDCSYLNTATSQLMRERTYGGKLTE-------------NI------ 601
            + R +   +S  +G  +Y+++   +  + + Y   L +             N+      
Sbjct: 763 EASRFIEQYFSVFRGVRNYMDSIIRE-AKTQGYVTTLLQRRRYLPEINASNYNLRSFAER 821

Query: 602 ------VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+   M    +          ++L VHDE++ E P+    ++  L  
Sbjct: 822 TAMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVP 881

Query: 649 SLMTKNPSWAKGLPLKAE 666
            +M +    A  +PLK E
Sbjct: 882 EVMEQAL--ALDVPLKVE 897


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
          Length = 881

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENQAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 807 DILKIAMIELDKRLKET 823



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 20/213 (9%)

Query: 457 LDLQQFSQ-NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK-- 513
           +    +SQ  ++  +   + E  ++  L  QD +   A++   I  A ++     R    
Sbjct: 653 IYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKA 712

Query: 514 -HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR-RLVY 570
            + G++    D        + ++               V    +R V           +Y
Sbjct: 713 VNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLY 772

Query: 571 SDVK--GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDI 624
              +   D +  N                    +Q  + DIL   M    K   + G   
Sbjct: 773 HRRRYLPDINSRNYNIRSFAERTA-----INTPIQGSAADILKIAMIELDKRLKETGLQA 827

Query: 625 VL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
            +   VHDE+V E P+    S+  L   +M + 
Sbjct: 828 TMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/554 (16%), Positives = 170/554 (30%), Gaps = 106/554 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDLLQY 60
           D ET          + AY   A I   ++A ++                  +   +  + 
Sbjct: 326 DTET--------NALDAY--NAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEAKEA 375

Query: 61  LRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF- 118
           L+       V  N  ++  + +   G+ +    +  T ++A      S++    LA  F 
Sbjct: 376 LKKLFKHKIVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDTLAKRFF 434

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           +  + K ++  +    F    +D                   EY   D   T +L+ +L 
Sbjct: 435 NHDMVKFKDVVSKNENFSHVPLDKA----------------CEYASEDAWMTLKLYNKLH 478

Query: 179 PLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            + +          E    L    +   G +ID      L +        L  +I  L D
Sbjct: 479 DMLEPRLLEIAKEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHEIFTLCD 538

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   T  L   LF   G+  V  ++         + + +L               +
Sbjct: 539 AQF-NLNSTQQLGTVLFEQLGLPPVKKTK--TGYSTDENVLNELLDKHPSIAKILEYREL 595

Query: 290 LKL-----NTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            KL       L +    S  GR+  +    G + TGR S      QN+P           
Sbjct: 596 YKLRSTYIEPLLKLSKESPLGRVHTSFIQTG-TSTGRLSSKDPNLQNIP----------- 643

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR   +A  G  L+  D + IE R+LA  + ++  +KAF
Sbjct: 644 -------------VKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAF 690

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLD 458
            +G+DI+  T  K F    ++ +  +R++ K +   L Y  G K          +     
Sbjct: 691 RDGKDIHYETALKLFG---EQEAASKRSVAKSINFGLLYGMGPKRLSETLGISMAEAKRY 747

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKL 498
           ++ +     +   +      ++      +                     Y   AV    
Sbjct: 748 IESYFATFPTIKAYVMEVAEQAKTTGYVETLLGRKRFFDFEHANAMQYAGYLREAVNTVF 807

Query: 499 IGTACELVKKAWRA 512
            G+A +L+K +   
Sbjct: 808 QGSAADLIKLSMNK 821



 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596
             A+R            K  V  V   ++   Y +   G   + +   +  M+   Y  +
Sbjct: 742 AEAKRYIESYFATFPTIKAYVMEVAEQAKTTGYVETLLGRKRFFDFEHANAMQYAGYLRE 801

Query: 597 LTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643
               + Q  + D++   M             ++L +HDE++ E  ++   S
Sbjct: 802 AVNTVFQGSAADLIKLSMNKIMATLIHDEAKLLLQIHDELIFEVVESQAQS 852


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 132/386 (34%), Gaps = 69/386 (17%)

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +  RG RID         ++  E  +L   I +       + R +  L   L
Sbjct: 467 PLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQAGEEF-NIRSSQQLAEVL 525

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLI-----LNRLASSGSAILKLNTLSEAVS 300
           F   G+     + G  +S  S S +  LA +       L            L  + +   
Sbjct: 526 FSRLGLACKQKTPGGAQST-SSSVLEGLAAEHPIVADVLEFRMYEKLRSTYLEPMPQLAD 584

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            +GR+  T     A+ TGR S      QN+P +                        G  
Sbjct: 585 KNGRIHTTFNQL-ATATGRLSSSNPNLQNIPIR------------------------GAL 619

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +RSC +AS G +LV AD + IE RVLA ++G+    +AFA G+DI+  T    F+T 
Sbjct: 620 GPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILFDTT 679

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED-- 474
             +VS ++R   K +   L Y  G +                +  +   +     F +  
Sbjct: 680 --EVSADERRKAKTINFGLLYGMGPQKLGRELGISLKEAKEFIAVYFSKLSRVREFYEEI 737

Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                +  S +  M  Q    A+   + G+A +++KKA     +
Sbjct: 738 EAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQARRMAINTVVQGSAADIIKKAMLEVDK 797

Query: 516 G----------VLQLWKDLTEGFACV 531
                      +LQ+  +L       
Sbjct: 798 SPVIGELGASLILQIHDELLLEAPAA 823


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 132/372 (35%), Gaps = 55/372 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G  +D   + ++   I +   +L+E I +       +      L
Sbjct: 441 EVELPLADVLAEMERVGMPVDARTLEEVGREIERRIAELEEAIFEDVGHPF-NIGSPKQL 499

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF   G+  V  ++    T   +L    +     + I+     +      +  L + 
Sbjct: 500 SEVLFEELGLPPVRRTKTGYSTDAKVLQQLALEHPIAERIIAWRELAKLKGTYVEGLLKL 559

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V  DGR+  T      + TGR S      QN+P +  +                      
Sbjct: 560 VGEDGRIHTT-LNQTTTATGRISSDSPNLQNIPVRTET---------------------- 596

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R    AS G+ LVVAD + IE R+LA ++ E   ++AF NGEDI+  T A+ F+
Sbjct: 597 --GMRIRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFD 654

Query: 419 TPIDKVSKEQRAIGKVMELAL-----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
              + V+ E R   K++   +     GY    ++     +     +Q++ +     + F 
Sbjct: 655 VRPESVTPELRRRAKMVNFGILYGISGYGLATRLGNVHPAEADRYIQRYFERHPRVTEFI 714

Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512
               AE+  L                              A   ++ G+A +++K A   
Sbjct: 715 RKSLAEAEELGYATTLFGRRRYVPELRNKNKNVRKLGERIAFNARVQGSAADIIKVAMVD 774

Query: 513 KHQGVLQLWKDL 524
               +  L  D+
Sbjct: 775 LAPRLGPLGADM 786



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATS 585
           G A  +       A R          R    +   L  +  L Y+    G   Y+    +
Sbjct: 683 GLATRLGNVHPAEADRYIQRYFERHPRVTEFIRKSLAEAEELGYATTLFGRRRYVPELRN 742

Query: 586 QLMRERTYGGKLTENI-VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTP 640
           +    R  G ++  N  VQ  + DI+   M          G D+++ VHDE+V +     
Sbjct: 743 KNKNVRKLGERIAFNARVQGSAADIIKVAMVDLAPRLGPLGADMLMQVHDELVFDVDRDR 802

Query: 641 YFSVGTL-CSLM 651
              V  L    M
Sbjct: 803 VEEVAALAAERM 814


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/522 (15%), Positives = 157/522 (30%), Gaps = 74/522 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D     V HN+     +F +        +     + LA     P        AL    
Sbjct: 394 LADPARPKVFHNAKSAMRVFAEHGW---TVEGVGMDTALAAYLVKPGRRSFDLDALTLEY 450

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              ++        +   G+ +    D           L   + +R  E       R    
Sbjct: 451 LGRELAPAATADGQLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGLLR---- 506

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E     L   +   G   D   +  ++++ A   ++  ++          +      
Sbjct: 507 -DVELPTSALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQ 564

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLS 296
           L+  LF   G+     ++    +            D  L  +        KL      L 
Sbjct: 565 LQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEGLI 624

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +++DGR+  +     A+ TGR S      QN+P +                       
Sbjct: 625 KTIAADGRIHTSFSQTVAA-TGRLSSTDPNLQNVPVRT---------------------- 661

Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  A+
Sbjct: 662 --DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQ 719

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F      V  E R   K M   L Y     G ++     A      +  + +       
Sbjct: 720 VFGVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARALIDAYFERFGGVRD 779

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           +      E+                      +   ++     A+   + GTA ++VK A 
Sbjct: 780 YLRRVVDEARETGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAM 839

Query: 511 RA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                         + +LQ+  ++    A   ++      R 
Sbjct: 840 LNVGRALDEAGLASRMLLQVHDEIVLEIAPGERDRTEQLLRH 881


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/507 (16%), Positives = 159/507 (31%), Gaps = 86/507 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112
             + Q+L D        +    ++      GI +    +    +LA     P+   L  +
Sbjct: 363 EPIRQWLSDADKEKWIFDKHRAQLALS-WKGIKLRGVSF--DVLLASYLLDPTESTLTLS 419

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--- 169
            +A  +S      +E       F KG+    P +     ++    L  E   R V     
Sbjct: 420 GVAGKYSVASLPADE-----QVFGKGAKFKLPEEHLLGENLS---LKAERVSRLVPVLKA 471

Query: 170 ------TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                  +EL+  L      E  L  +   +   G ++D + + +L   I+ + K + + 
Sbjct: 472 KLEESGMQELYYEL------EHPLAGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDR 525

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----I 278
           I +       +      L   LF    + +   ++           + +LA        I
Sbjct: 526 IYEQAGMTF-NINSPKQLGEVLFEKLQLPVQKKTKTG--YSTDAEVLEKLAPYHDIVGDI 582

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L+    +      +  L + V  D     T      + TGR S      QN+P +     
Sbjct: 583 LHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIR----- 637

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   + S  G  ++ AD + IE RVLA I+G++ 
Sbjct: 638 -------------------LEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 678

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             +AF    DI+  T    F     +V    R   K +   + Y     G ++       
Sbjct: 679 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 738

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++Q+    +    + D                       +  + +  ++      
Sbjct: 739 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 798

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519
           A+   + GTA +++K A     + + Q
Sbjct: 799 AMNTPIQGTAADIIKLAMVQMDERLKQ 825



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 111/318 (34%), Gaps = 49/318 (15%)

Query: 392 IAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQGGA 445
            + +   ++  A   DI     +  T AK  +T ++ + KE R   GKV      Y+   
Sbjct: 562 YSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTY---YRQTI 618

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                ++S          +  +     + +  ++     +   Y +  ++     +  E 
Sbjct: 619 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 678

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN--VPRLVMRRHKRDVHIVLP 563
           +K+A+        +   D+       V      SA+ V    V  +      +++ I   
Sbjct: 679 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 738

Query: 564 SSRRLV---YSDVKGDCSYLNTATSQLMRERTYGGKLTE-------------NI------ 601
            + R +   +S  +G  +Y+++   +  + + Y   L +             N+      
Sbjct: 739 EASRFIEQYFSVFRGVRNYMDSIIRE-AKTQGYVTTLLQRRRYLPEINASNYNLRSFAER 797

Query: 602 ------VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+   M    +          ++L VHDE++ E P+    ++  L  
Sbjct: 798 TAMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVP 857

Query: 649 SLMTKNPSWAKGLPLKAE 666
            +M +    A  +PLK E
Sbjct: 858 EVMEQAL--ALDVPLKVE 873


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/495 (16%), Positives = 167/495 (33%), Gaps = 66/495 (13%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           TE +    +   +  D        ++    +  K   GI++    +         N   +
Sbjct: 349 TEVALQSEEFAAFASDHKRKKTVFDAKRAIVALK-WKGIELNGIDFDFIIASYIVNPSET 407

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S   A +A     +  + +E     A + KG+  + P     A+H+       +  K   
Sbjct: 408 STDLAEIARKKGYYQIETDE-----AVYGKGAKRAVPDQQKVADHLVRKTFAMQEMKESF 462

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  ++L    + E  L L+   +   G ++D   + ++   + ++ +K++E I  L
Sbjct: 463 IHELKDNEQLELFEELEMPLTLVLGEMEALGIKVDKARLEEMGTDLGEKLEKIEEKIFDL 522

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +      L + LF   G+  V  ++       S   + +LA+   + +      
Sbjct: 523 AGEKF-NINSPKQLGVILFEKLGLPPVKKTKTG--YSTSADVLEKLAEKHEVIQQILHYR 579

Query: 288 AILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL +     L + +  D  ++         ++TGR S      QN+P          
Sbjct: 580 QLGKLKSTYIEGLLKVIHEDSNKIHTRFN-QALTQTGRLSSIDPNLQNIP---------- 628

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   I S     +  AD + IE RVLA IA ++  I+
Sbjct: 629 --------------VRLEEGRKIREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIE 674

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF    DI+  T    F+   D+V+   R   K +   + Y     G ++          
Sbjct: 675 AFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKDAK 734

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             + ++ ++      + +                       +  S +  ++      A+ 
Sbjct: 735 TFIDRYLESFPGVKEYMEDSVLDAKDKGYVTTLLHRRRYLPEITSSNFNLRSFAERTAMN 794

Query: 496 DKLIGTACELVKKAW 510
             + G+A +++KKA 
Sbjct: 795 TPIQGSAADIIKKAM 809



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M        +      ++L VHDE+V E P      +  +   +M + 
Sbjct: 797 IQGSAADIIKKAMIDMANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQA 856

Query: 655 PS 656
             
Sbjct: 857 VE 858


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/562 (16%), Positives = 180/562 (32%), Gaps = 88/562 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLKNA 112
           +  +   + +  + HNS   R +  +     I     I  + +A     P      L  A
Sbjct: 351 VKNFFEAKNISKILHNSKDLRHILYRY---QINIHGNIFDTAIASYLINPLQSDYELSVA 407

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +       +  GK  I      S         RA+    W L     K   +A+  
Sbjct: 408 ATGYDIKHVDQLLGTGKNKITWASLASXIIVAQLGARASA--MWTLQTAQLKELTDASM- 464

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
               L    D E  L  +   +   G  +D   +    + +      L++DI  L D   
Sbjct: 465 ----LDLFYDIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLADEKF 520

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
             S     L + LF   GI     ++       + + + +L    ++           KL
Sbjct: 521 NISSS-KQLGLILFDKLGIPAGKKTK--TGYSTAANILDKLKDKYVIVAKVLEYRQYKKL 577

Query: 293 NT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++     L + +  + +L  T      + TGR S      QN+P +              
Sbjct: 578 HSTYVVGLLKLLDKNNKLHSTFN-QTVTATGRISSAEPNLQNIPIR-------------- 622

Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   I S +    + AD + IE RVLA ++ +    +AF  G 
Sbjct: 623 ----------LALGKEIRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQRAFLEGI 672

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462
           DI+ +T ++ F    D V++ QR   K +   + Y       A   +         ++ +
Sbjct: 673 DIHTSTASEVFGV--DTVTQAQRNAAKAVNFGVVYGISAFSLADDIQVSNQEATEYIENY 730

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
                +   + D                       +  S +   ++     A+   + GT
Sbjct: 731 FAKYPNVKHYLDSLITTSQATGYGVTLLNRKRNIVELFSSNFNTKEYGKRIAMNMPIQGT 790

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A +++KKA        +Q+   L    + ++    ++    +  V +  +    + +   
Sbjct: 791 AADIIKKAM-------IQVHNALKGTRSTLIL---TVHDELLLEVHKSEIEHITKLLKTE 840

Query: 562 LPSSRRLVYS---DVKGDCSYL 580
           + S+ +L      DVK   S+ 
Sbjct: 841 MESAVKLAVPLLVDVKSGXSWF 862



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 593 YGGKLTENI-VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           YG ++  N+ +Q  + DI+ + M        G    ++LTVHDE++ E   +    +  +
Sbjct: 777 YGKRIAMNMPIQGTAADIIKKAMIQVHNALKGTRSTLILTVHDELLLEVHKSE---IEHI 833

Query: 648 CSLM 651
             L+
Sbjct: 834 TKLL 837


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENQAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 807 DILKIAMIELDKRLKET 823



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKKVMEQA 860


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/519 (17%), Positives = 166/519 (31%), Gaps = 101/519 (19%)

Query: 42  VKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           V + D  + +      L ++L +       H                         S  A
Sbjct: 341 VIVQDLADVAPKDEKALAEWLANPQATKWLH------------------------DSKKA 376

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +L+N  L L+  EH T      +L A   +  + +         HV      G
Sbjct: 377 YH-----TLQNQGLTLDGVEHDT------SLAAYLLRPDVRTLSLADVVQRHVGHELSEG 425

Query: 161 EYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                  +A  EL K L P            D E  L L+   +   G  +D   + +L 
Sbjct: 426 ATGPERAQAVAELVKALTPEIEAAGQAELYFDLEVPLALILAAMEHAGIAVDDAALQELS 485

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           +       +      +L      +      L+  LF    +     ++    +  +    
Sbjct: 486 DDYGARLNEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEK 545

Query: 271 TQLAKDLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                +        +     K    ++ L EAV  DGR+  T    GA+ TGR S     
Sbjct: 546 LAAQSNHPFLGHLMAHREYQKMKSTIDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPN 604

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIE 385
            QN+P +                          A   +R+      G   L+ AD + IE
Sbjct: 605 LQNIPVRT------------------------DAGRKIRAAFTVGEGYETLLTADYSQIE 640

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            RV+A ++ +   I+A+A+GED++    ++ F+ P+D+V+ E R   K +   L Y    
Sbjct: 641 MRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSA 700

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G ++  K  A      +  + +       + D                       +  S
Sbjct: 701 FGLSQQLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRYLPELNS 760

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +   ++     A+   + GTA +++K A     + + +
Sbjct: 761 SNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITR 799



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655
           +Q  + DI+   M    +          ++L VHDE+V E        +  +  L+ +  
Sbjct: 778 IQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDELVVEV---APGELEQITELVEREM 834

Query: 656 SWAKGL--PLK 664
             A  L  PL 
Sbjct: 835 DAAAQLRVPLD 845


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 128/389 (32%), Gaps = 66/389 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T  + +      + E  L  +   +   G+ ++ + ++   + + +  K++ ++I  L  
Sbjct: 483 TIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAG 542

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNR 281
               +      L   LF   G+  +  ++    T   +L      H  + ++    +L +
Sbjct: 543 TSF-NLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAK 601

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           L S+      +  L + +    GR+         + TGR S      QN+P +       
Sbjct: 602 LQSTY-----VEGLLKVIRKETGRVHTRF-HQTLTATGRLSSSEPNLQNIPIR------- 648

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R     +     +  AD + IE R+LA ++G++  I
Sbjct: 649 -----------------LEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 691

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
            AF    DI+  T A  F  P ++V+   R   K +   + Y     G A+         
Sbjct: 692 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEA 751

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++ + +       + D                          S +  ++      A+
Sbjct: 752 KRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAM 811

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              + G+A +L+K A     + +     D
Sbjct: 812 NTPIQGSAADLIKLAMVRIDRAMRDAQMD 840



 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A+R            KR +  ++  +R   Y     +   YL    S+  + R++  + 
Sbjct: 750 EAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERT 809

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             N  +Q  + D++   M    +          ++L VHDE++ E P     ++  L  
Sbjct: 810 AMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVR 868


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/531 (16%), Positives = 168/531 (31%), Gaps = 116/531 (21%)

Query: 48  TEQSAMPSDLLQYLR----DETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLART 102
            E     +++L+ L       T      N+ ++R +L +  L ++  +   +    L   
Sbjct: 436 AEGQLPLAEVLEALAPWLASPTQRKCLQNAKYDRLVLLRHGLELNGVAVDTLLADYLRDA 495

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
           +   +  + A     F         GK     F    I                +   +Y
Sbjct: 496 SARHNLEELAQRHYGFRPTSFSDLVGKG--QTFADVPI----------------EAAAQY 537

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQ--------------TINDRGYRIDLDLVLK 208
           C  DV  T  L   L  +   E+    L Q               +   G RID+  + +
Sbjct: 538 CGMDVHLTYRLAIDL--VQQLEQLGEALPQLLSELELPLEPVLAQMEATGIRIDVPYLQE 595

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L + +  + ++L++  +         +     L   LF   G+D     +         +
Sbjct: 596 LGQSMGDKLQQLEQQAIAAAGEEFNLA-SPKQLGELLFNTLGLDRKKSRKTKTGWSTDAA 654

Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322
            + +L     +  L      + KL     + L + V S  GR+         + TGR S 
Sbjct: 655 VLEKLEDAHPVVPLVLEHRTLSKLKSTYVDALPQLVESETGRVHTDFN-QAVTATGRLSS 713

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P +                           S  +R   +      L+ AD +
Sbjct: 714 SNPNLQNIPVRT------------------------AYSRQIRKAFLPQKDWTLLSADYS 749

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+L  + GE+  ++A+ +G+D++  T     +    +VS E+R +GK +   + Y 
Sbjct: 750 QIELRILTHLCGEEALVEAYNSGDDVHALTARLLLDKS--EVSDEERRLGKTINFGVIYG 807

Query: 443 GGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA-------------------- 478
            GA+          +     L ++ Q       F +W++                     
Sbjct: 808 MGAQRFARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMGRRRPFHF 867

Query: 479 -------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                               +    M+ Q    A    + G++ +++KKA 
Sbjct: 868 DPQGLGRLKGTDPAEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKKAM 918


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 143/413 (34%), Gaps = 62/413 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L ++   +  +G  +D +++ ++   + ++   ++EDI ++      +      L
Sbjct: 505 ELEEPLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQIAGVSF-NINSPQQL 563

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    +  +   +    T    L          + IL            +  L   
Sbjct: 564 GKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEKILEFRHLVKLNSTYVKGLLGQ 623

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++  T Q    + TGR S      QN+P +                         
Sbjct: 624 L-RDGKVHTTFQ-QMVTATGRLSSTEPNLQNIPIR------------------------M 657

Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +    G +L  AD + IE RVLA  + +    ++F  GED++  T ++ F
Sbjct: 658 EEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDVHARTASEVF 717

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P+++V+ + R   K +   L Y     G A+  +         ++++ Q       + 
Sbjct: 718 GVPLEQVTPDMRRKAKAVNFGLMYGLTDFGLARDIRIPRKEAKFYIERYFQRYSGVKKYL 777

Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +     +                      +  ++      A+   + GTA +++K A   
Sbjct: 778 NDSVVNAMETGETRTLLNRLRQTPELNHQNRTVRQFGQRIAMNSPIQGTAADIMKLAMIR 837

Query: 513 KHQGVLQLWKDLTEGFACVVQEG--GSISARRVANVPRLVMRRHKRDVHIVLP 563
             + +    K L       V +     +SAR +  V ++V    +  + + +P
Sbjct: 838 VDEAM----KGLEANLLLQVHDELLLEVSARALPEVAQIVKTEMESALLLTVP 886



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    +       +++L VHDE++ E        V  +  
Sbjct: 823 IQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSARALPEVAQIVK 874


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/497 (14%), Positives = 147/497 (29%), Gaps = 72/497 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SLKN 111
           + ++L D  +     +    R        GI +    +     LA     P+    S+  
Sbjct: 366 VREWLADADMEKAGFDLH--RTELSLAWHGIALKGISF--DIQLAAYLLDPTDSTQSISG 421

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            C        +   E      A+F                         +  + +     
Sbjct: 422 LCGKYGLP-TVQADESVYGKGAKFKLPEAGVLHGHIASKTDAVRSIAAIQREELEKTGMH 480

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+  L      E+ L  +   +  +G R D  ++ +L   +      +   +  L    
Sbjct: 481 KLYYDL------EQPLSRVLAGMELQGIRCDASVIEQLGAELESRISDIMTKVYTLAGME 534

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L   LF   G+ ++  ++    T   +L            IL     +   
Sbjct: 535 F-NINSPRQLGEVLFEKLGLPVIKKTKTGYSTDADVLEKLEPYHEIIPSILLFRQLAKLQ 593

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +  L + +    G++  T      + TGR S      QN+P +              
Sbjct: 594 STYVEGLLKEIRPNTGKIH-TYYRQTIAATGRLSSQYPNLQNIPIR-------------- 638

Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   + S  G  ++ AD + IE RVLA I+G++   +AF    
Sbjct: 639 ----------LEEGRQIRKAFVPSEPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDL 688

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           DI+  T +  F    + V    R   K +   + Y     G +             ++Q+
Sbjct: 689 DIHTKTASDVFGVRPEDVDANMRRQAKAVNFGIVYGISDFGLSNNLNITRKEAAQFIEQY 748

Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501
               +    + D   A++                      +  ++      A+   + GT
Sbjct: 749 FAAFQGVRRYMDNIVAQARTDGYVTTLLERRRYLPEIKASNFNIRSFAERTAMNTPIQGT 808

Query: 502 ACELVKKAWRAKHQGVL 518
           A +++K A     + + 
Sbjct: 809 AADIIKLAMVRMDEQLR 825



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 92/285 (32%), Gaps = 46/285 (16%)

Query: 421 IDKVSKEQR-AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           ++ + KE R   GK+      Y+        ++S    +LQ     ++            
Sbjct: 597 VEGLLKEIRPNTGKIHTY---YRQTIAATGRLSSQY-PNLQNIPIRLEEGRQIRKAFVPS 652

Query: 480 SHHLWM-QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
               +M    Y +  ++     +  E +K+A+        +   D+       V      
Sbjct: 653 EPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMRR 712

Query: 539 SARRVAN--VPRLVMRRHKRDVHIVLPSSRRLV---YSDVKGDCSYLNTATSQLMRERTY 593
            A+ V    V  +       +++I    + + +   ++  +G   Y++   +Q  R   Y
Sbjct: 713 QAKAVNFGIVYGISDFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQ-ARTDGY 771

Query: 594 GGKLTE-------------NI------------VQAISRDILCEGMKN----ATKNGYD- 623
              L E             NI            +Q  + DI+   M          G   
Sbjct: 772 VTTLLERRRYLPEIKASNFNIRSFAERTAMNTPIQGTAADIIKLAMVRMDEQLRARGLRS 831

Query: 624 -IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
            ++L VHDE+V E P      +  L   +M         +PLKA+
Sbjct: 832 RMLLQVHDELVFEVPADELELMKELVPQVMESAIK--LDVPLKAD 874


>gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
 gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
          Length = 886

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/496 (12%), Positives = 151/496 (30%), Gaps = 70/496 (14%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKN 111
            L   L +  +     ++    +  ++   + +      C  +L           + L  
Sbjct: 366 PLKGLLENADIAKQVFDAKRTFVALQR---LAVTLTGVDCDLLLGSYLLNTYDNSNDLGR 422

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEAT 170
             +   +   +   E+       + KG+  + P D     +H+       E  +  +   
Sbjct: 423 LAMEHGY-HQVATDEDV------YGKGAKAAIPDDDDVFFSHLARKARAIEQLRPQIFKD 475

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               ++     D E  +  +   +   G  ++   +  +     ++  ++++ I      
Sbjct: 476 LADNEQTDLYRDIELPMAFVLARMEVAGITVEASELEAMGSKFTEQLAEIEQTIYNEAGE 535

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF   G+ ++  ++    T   +L          + IL     +  
Sbjct: 536 EF-NIGSPKQLGHILFEKMGLPVIKKTKTGYSTAVGVLEKLAAEAPIAENILKYRKIAKI 594

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L + +  D +   T      ++TGR S      QN+P                
Sbjct: 595 QSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGRLSSVDPNLQNIP---------------- 638

Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   + S    ++  +D + IE RVLA ++ +    +AF  G+
Sbjct: 639 --------VRNEEGRAIRKAFVPSHPDWEIFSSDYSQIELRVLAHMSHDKQMQEAFREGQ 690

Query: 407 DIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           DI+  T  + F   P ++V+   R   K +   + Y     G ++            +  
Sbjct: 691 DIHAATARRIFKMGPDEEVTPNIRRQAKAVNFGIVYGISDFGLSQNIGISRKQAKAFIDT 750

Query: 462 FSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIG 500
           + +       + +    ++H L                       +      A+   + G
Sbjct: 751 YFEEYPGVKAYTERMVQQAHELGYVETIAHRRRYLPDINSRNFNQRSFAERTAMNTPIQG 810

Query: 501 TACELVKKAWRAKHQG 516
           +A +++K A     Q 
Sbjct: 811 SAADIIKIAMIRMEQA 826



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
           +Q  + DI+   M    +        ++L VHDE++ E P +   ++  L  S+M     
Sbjct: 808 IQGSAADIIKIAMIRMEQALKDMQATMLLQVHDELIFEAPASEIDTLAKLVPSVMDSAIE 867

Query: 657 WAKGLPLKAE 666
               +PLK E
Sbjct: 868 --LEIPLKVE 875


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/552 (16%), Positives = 178/552 (32%), Gaps = 98/552 (17%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           E       A    D  VK         +    L + + DE V  + + SL E I+    L
Sbjct: 335 EDVKPIYLAVKVKDSEVKFI---SYEEIDFDFLKKIMEDEKVEKLGY-SLKEDIIILMDL 390

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID--- 141
           GIDI +                 S          +   +  +  K  +A F  G +D   
Sbjct: 391 GIDIKNY----------------SHDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLED 434

Query: 142 -------SPPYDCTRANHVQAWQLF---GEYCKRDVEATRELFKRLIPL-SDGERDLWLL 190
                     Y     + +  +  F     Y   D++  +   + +  L  D E  L  +
Sbjct: 435 LLGKGAKKKTYADLDKDDLFKYFAFVLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEV 494

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
             ++   G   D  ++ ++ + I ++ K L+E+I         +      L + LF    
Sbjct: 495 LASMEYVGINTDEAVLDEIDKQIIEKLKTLEEEIYDEAGEKF-NINSPKQLGVILFDKMD 553

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
             ++  ++    T   +L          D IL+    S      ++ L   ++   +   
Sbjct: 554 FPVIKKTKTGYSTSADVLEKLRGKGEIIDKILDYRKFSKLKSTYIDGLKAVINKKTKRIH 613

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P +                              +R  
Sbjct: 614 SRFMQTVTATGRISSTDPNLQNIPIKT------------------------EEGRLIRKA 649

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +AS G  LV AD + IE RVLA ++ +   + AF +G DI+  T ++ F+   D+V   
Sbjct: 650 FLASEGGVLVDADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDR 709

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473
           QR   K +   + Y     G ++            +  +  +      +           
Sbjct: 710 QRYEAKAVNFGIVYGISDYGLSQNLNIPRKAAKEYIDNYLGHFVGIKDYMAEEIKNGKDK 769

Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA---------- 512
                         +  + +  ++      A+   + G+A +++K A             
Sbjct: 770 GYVETIFKRRRYIPELNAKNFNIRSFGERIALNTPIQGSAADIIKIAMVKVYNELKKRNL 829

Query: 513 KHQGVLQLWKDL 524
           K + ++Q+  +L
Sbjct: 830 KSKLIIQIHDEL 841



 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHD 630
            Y+    ++    R++G ++  N  +Q  + DI+   M               +++ +HD
Sbjct: 780 RYIPELNAKNFNIRSFGERIALNTPIQGSAADIIKIAMVKVYNELKKRNLKSKLIIQIHD 839

Query: 631 EIVSETPDTPYFSVGTLCSLM 651
           E+V +T +     +  +  LM
Sbjct: 840 ELVVDTAEDE---IEEVKELM 857


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 137/414 (33%), Gaps = 69/414 (16%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E  + L      E  L  +   +   G  +D   + +    I+ +   L  +I  L  G
Sbjct: 453 LEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKG 512

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLAS 284
              +      L   LF    +     ++ T     +++ + +  +      + IL+    
Sbjct: 513 EF-NINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFW 571

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +      L+++   +S    R+  +      + TGR S      QN+P +          
Sbjct: 572 TKLQSTYLDSMEGLISPRTKRIHTSFN-QTVTATGRLSSSEPNLQNIPVRT--------- 621

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R+    S+G   L+ AD + IE R+LA ++ +   ++AF
Sbjct: 622 ---------------EEGRQIRALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAF 666

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +G+DI+  T ++ F  P++ V+ + R   K +   + Y     G +K            
Sbjct: 667 LHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVYGISDYGLSKDLHISRQEAADY 726

Query: 459 LQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDK 497
           +  +         F                      D    +S +   +      A+   
Sbjct: 727 IASYFAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTP 786

Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541
           + G+A +++K A    H+           +LQ+  +L        +E  +   R
Sbjct: 787 IQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVR 840



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642
           +RT   ++  N  +Q  + DI+   M    +     G+   I+L VHDE+V E       
Sbjct: 774 QRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKE 833

Query: 643 SVGTLCS 649
            V  L  
Sbjct: 834 QVAELVR 840


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 884

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/576 (14%), Positives = 177/576 (30%), Gaps = 84/576 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW ++   ++  T    +  DL +    + +        F+R  +    LGID+P+
Sbjct: 342 IIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGIDLPA 396

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   S LA+                         +     A + KG+  + P      
Sbjct: 397 PAF--DSRLAKYLLSTVDDNELSTIARLYTEYVLDSD----EAVYGKGAKRAVPDKAVLL 450

Query: 151 NHVQAWQL---FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           +H+    +     E    D     +    L    D E+ L  +   +   G  +  + + 
Sbjct: 451 SHLARKIVVLNHSEKAMLDKLTEHQQASLLF---DMEQPLANVLAKMEIAGISVKKETLQ 507

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            +++       +L ++I  L      +      L   LF    +      +       + 
Sbjct: 508 DMEKANQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAV 566

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             + +LA    +         I KL +     L + +  DG++         ++TGR S 
Sbjct: 567 DVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKDGKIHTRY-LQDLTQTGRLSS 625

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADL 381
                QN+P                                +R   +     + L+ +D 
Sbjct: 626 VDPNLQNIP------------------------VRLEQGRLIRKAFVPETADEVLLSSDY 661

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440
           + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R   K +   + 
Sbjct: 662 SQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGIV 721

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475
           Y     G A             ++ + +       + +                      
Sbjct: 722 YGISDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRREL 781

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
               + +  ++      A+   + G+A +++K A     + ++              +  
Sbjct: 782 PDINARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVD--------GRFKTKML 833

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             +    +  VP+  +   ++ V   + S+  L   
Sbjct: 834 LQVHDEIILEVPKDELEAIEKLVKETMESAIELSVP 869


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 137/414 (33%), Gaps = 69/414 (16%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E  + L      E  L  +   +   G  +D   + +    I+ +   L  +I  L  G
Sbjct: 452 LEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKG 511

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLAS 284
              +      L   LF    +     ++ T     +++ + +  +      + IL+    
Sbjct: 512 EF-NINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFW 570

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +      L+++   +S    R+  +      + TGR S      QN+P +          
Sbjct: 571 TKLQSTYLDSMEGLISPRTKRIHTSFN-QTVTATGRLSSSEPNLQNIPVRT--------- 620

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R+    S+G   L+ AD + IE R+LA ++ +   ++AF
Sbjct: 621 ---------------EEGRQIRALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +G+DI+  T ++ F  P++ V+ + R   K +   + Y     G +K            
Sbjct: 666 LHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVYGISDYGLSKDLHISRQEAADY 725

Query: 459 LQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDK 497
           +  +         F                      D    +S +   +      A+   
Sbjct: 726 IASYFAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTP 785

Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541
           + G+A +++K A    H+           +LQ+  +L        +E  +   R
Sbjct: 786 IQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVR 839



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642
           +RT   ++  N  +Q  + DI+   M    +     G+   I+L VHDE+V E       
Sbjct: 773 QRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKE 832

Query: 643 SVGTLCS 649
            V  L  
Sbjct: 833 QVAELVR 839


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
          Length = 881

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/501 (13%), Positives = 163/501 (32%), Gaps = 83/501 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           + D   +   +++    +   +  G                T G+   +      L+ +E
Sbjct: 365 ITDPNRLKKVYDAKRTYVALNRYTGK---------------TKGIDFDVLLGAYLLDTNE 409

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA----TRELFKR 176
             T +E   A        S ++      +    +  +LF  +  R V A    T +L + 
Sbjct: 410 KSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQE 469

Query: 177 LIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           L   +        E  L ++   +   G ++D   + +++   +   +++++ I +    
Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGE 529

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSG 286
              +      L + LF   G+ ++  ++      +  +        + +D++  R  +  
Sbjct: 530 EF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
            +   +  L + + SDG++         ++TGR S      QN+P +             
Sbjct: 589 QST-YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR------------- 633

Query: 347 LNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   +       +  +D + IE RVLA I+ ++    AF  G
Sbjct: 634 -----------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEG 682

Query: 406 EDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           +DI+ +T  + F     + V+   R   K +   + Y     G ++            + 
Sbjct: 683 QDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYID 742

Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499
            + +       + +                          S +  ++      A+   + 
Sbjct: 743 TYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQ 802

Query: 500 GTACELVKKAWRAKHQGVLQL 520
           G+A +++K A     + + + 
Sbjct: 803 GSAADILKIAMIELDKRLKET 823



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860


>gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
 gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
          Length = 885

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/494 (15%), Positives = 156/494 (31%), Gaps = 74/494 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110
             L   L D+ V     +     +   +   + I +       +LA          + L 
Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNENNSNDLG 420

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             C   N+ +           +  + KG   + P +    NH+    L  E  K  +   
Sbjct: 421 EICQLYNYYDLQPD-------VDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTLLKR 473

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               ++       E  +  +   +   G + D   +++L     Q   +L+ DI  L  G
Sbjct: 474 LTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAG 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSG 286
              +      L   LF    +  +  ++     +++ +    + + + + ++  R  +  
Sbjct: 533 ERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKI 592

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
            +   +  L + +  DGR+    Q    + TGR S      QN+P               
Sbjct: 593 QST-YVKGLLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP--------------- 635

Query: 347 LNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                            +R   I S  +G      D + +E RVLA ++G++   +AF  
Sbjct: 636 ---------VRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKT 685

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+  T  K F+    D+V+   R   K +   + Y     G +K            +
Sbjct: 686 GYDIHAHTAMKIFHLDSPDEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFI 745

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
             + +       + D E   +                      +  ++      A+   +
Sbjct: 746 DNYFEQYPKIKDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPI 805

Query: 499 IGTACELVKKAWRA 512
            G A +++K A   
Sbjct: 806 QGGAADIIKIAMIN 819


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/602 (15%), Positives = 184/602 (30%), Gaps = 119/602 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQSAMPS------- 55
            +D ET S  PL           A +    +   +E   L       QS           
Sbjct: 384 ALDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQLAIE 433

Query: 56  ----DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSS 108
               +L  ++          N  F+R +F       +        ++LA     N     
Sbjct: 434 DVFLNLRTWIESPEKEKTLQNCKFDRQIF---YNHGLNLSGVTFDTLLADYILNNQEKHG 490

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L   C     F     K   GK     F   +  S           +  ++F E  +++ 
Sbjct: 491 LSEICFREFGFKPPSFKETVGKNKDFSFVDINHASIYCGYDVFLTYKIAKIFKERFRKEK 550

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +   +LFK      + E  L  +   +   G  ID+  + +L   +      ++E++ ++
Sbjct: 551 KELTKLFK------EIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLANIEENVFEI 604

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  S     L   LF    +D     +           + +L ++  +        
Sbjct: 605 AKQEFNLS-SPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPYLIKHR 663

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            + KL     + L   ++   GR+        A+ TGR S      QN+P +        
Sbjct: 664 TLSKLLSTYIDALPNLINKKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT------- 715

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                              S  +R   +   G KL+ AD + IE R+LA +A E+  I A
Sbjct: 716 -----------------EFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEILITA 758

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCGL 457
           F   +DI+  T    F      ++ ++R +GK +   + Y  G K F        +    
Sbjct: 759 FHQNDDIHSLTARLIFEKK--DINSDERRVGKTINFGVIYGMGIKKFARSTGVSTTEAKE 816

Query: 458 DLQQFSQNVKSTSTFEDWEQ---------------------------------------A 478
            L ++ +       F + ++                                        
Sbjct: 817 FLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRKREFKFDKNGLGRLIGKEPYEIDLQ 876

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVV 532
            +    M+ Q    A    + G++ +++K A    ++ +      +++   + +     V
Sbjct: 877 TARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDELLFEV 936

Query: 533 QE 534
           + 
Sbjct: 937 KP 938


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/505 (17%), Positives = 168/505 (33%), Gaps = 95/505 (18%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             + HN  ++  + K    + +P K +  T +LA        +    LA    ++ T   
Sbjct: 379 TVIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVLAKRIFDYETLHF 437

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--------LFKRLI 178
           E         K        D  +A          +Y   D   T          L K L+
Sbjct: 438 ED------LVKKGESFAGVDVEKA---------CKYAAEDAYITLRFYLYFLKNLEKSLL 482

Query: 179 PLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            L+   E +   +   + + G ++D+  +  L +   Q+ K L E I  L      +   
Sbjct: 483 ELAQKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLAGEKF-NINS 541

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----- 292
              +   LF    +     S+           +  L  + ++ +   +   + KL     
Sbjct: 542 PKQVGDILFEKLKLPSGKKSK--TGYSTDEKVLNNLIDEHLIIKEILAYRELAKLVGTYC 599

Query: 293 NTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             L +    D   R+  +    G + TGR S      QN+P                   
Sbjct: 600 EPLLKLAKKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   ++C +A  G   +  D + IE R+LA  + ++  ++AF+N EDI+ 
Sbjct: 642 -------GQYAKDYKTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + +   R+I K +   L Y  G    ++  K  A      ++++ +N 
Sbjct: 695 KTAIMIFG----ESNYHTRSIAKSINFGLIYGMGYKTLSQNLKIEAKLAKEYIEKYFKNF 750

Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506
            S  T+ +  + E+                            Y   ++   L G+A +++
Sbjct: 751 TSIKTYFEKVKNEAKQNGFIKTLLGRKRYFDFENAKPMQIAMYERESINSTLQGSAADII 810

Query: 507 KKAWRAK-------HQGVLQLWKDL 524
           K A            + +LQ+  +L
Sbjct: 811 KLAMIKIAKDLDENKRLILQIHDEL 835



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631
           G   Y +   ++ M+   Y  +   + +Q  + DI+   M    K       ++L +HDE
Sbjct: 775 GRKRYFDFENAKPMQIAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDE 834

Query: 632 IVSETPDT 639
           ++ E  D 
Sbjct: 835 LIFEVKDE 842


>gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 838

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 807 DILKIAMIELDKRLKET 823


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 151/445 (33%), Gaps = 67/445 (15%)

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN  ++   + E       +   S +S      +    +  ++  ++  R ++A R L K
Sbjct: 409 LNTKDNSKDLSEVAMEHDYYDVSSDESVYGKGAKIAIPEDKKVTYDHVARKIKAIRILSK 468

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           +L    +           E  L ++   +   G +++   +++++E  A     +++ + 
Sbjct: 469 QLSDNLEKNVQTKLFDEMELPLSIVLAEMELTGVKVNDKRLMEMKEEFAIRLNDIEQRVY 528

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           +L      +      L + LF   G  +V  ++    T   +L          + IL   
Sbjct: 529 ELAGEKF-NLNSPKQLGVILFEKMGYPVVKKTKTGYSTAVDVLEQLKEQAPIVEHILEYR 587

Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +      +  L + +    G++         ++TGR S      QN+P +        
Sbjct: 588 QIAKIQSTYIEGLLKVIDKETGKIHTRY-MQTIAQTGRLSSVDPNLQNIPIR-------- 638

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   + S  G K+  +D + IE RVL  ++ +    +
Sbjct: 639 ----------------LEEGRKIRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKE 682

Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           AF  G+DI+ +T  + F     ++VS E R   K +   + Y     G ++         
Sbjct: 683 AFIEGQDIHSSTAMRVFGISSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKEA 742

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +      T+ +                       +  S +  ++      A+
Sbjct: 743 QRFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFHRRRYLPEINSRNFNLRSFAERTAI 802

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519
              + G+A +++K A     + + +
Sbjct: 803 NTPIQGSAADIIKIAMIKMDERLKE 827


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
          Length = 881

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 807 DILKIAMIELDKRLKET 823



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
          Length = 881

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/496 (14%), Positives = 163/496 (32%), Gaps = 76/496 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
                  + +    E+ +                       ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKNQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQ 519
           +++K A     + + +
Sbjct: 807 DILKIAMIELDKRLKE 822



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 801 IQGSAADILKIAMIELDKRLKEAGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 807 DILKIAMIELDKRLKET 823



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
          Length = 881

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 807 DILKIAMIELDKRLKET 823



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 341 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 400

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 401 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 460

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 461 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 519

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 520 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 578

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 579 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 620

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 621 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 673

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 674 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 733

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 734 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 793

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 794 DILKIAMIELDKRLKET 810



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 788 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 847


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 92/522 (17%), Positives = 178/522 (34%), Gaps = 99/522 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +    +++  +++  T +LA        +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183
                   K   +    +  +A          +Y   D   T       L     PL + 
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLETPLLEL 484

Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   +   + + G ++D + +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSG-SAIL 290
            +   LF    +      +    T + +L      H  I ++     L +L S+    +L
Sbjct: 544 QMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLL 603

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL         + R+  +    G + TGR S      QN+P                   
Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+ 
Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + + E R++ K +   L Y  G    ++  K  A+     ++++ +N 
Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAKSYIEKYFENF 750

Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506
            S   + +  + E+                            Y   ++   L G+A +++
Sbjct: 751 TSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810

Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           K A    ++        +LQ+  +L       + E      R
Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDE 631
           G   Y +   ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE
Sbjct: 775 GRKRYFDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDE 834

Query: 632 IVSETPDTPYFS-VGTLCSLM 651
           ++ E  D    + V     +M
Sbjct: 835 LIFEVKDDLCENFVKKTRDIM 855


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 80/512 (15%), Positives = 169/512 (33%), Gaps = 76/512 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            +L   L DE +     +     +   + LGI      +    +LA       + +N   
Sbjct: 365 DNLKHLLEDEKIKKNVFDLKRTTVGLHR-LGIHAHGLDY--DMLLASYL---VNNENNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L    HL      K  +  + KG  +  P D    NH+ +     E  K  +    +  
Sbjct: 419 DLGEIAHLYGDYSVKTDMEVYGKGKSEHIPDDDILFNHLASKVNAIEKLKEPLLKKLKEH 478

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           ++       E     +   +   G +++   +++LQ   A + K+L++ I +       +
Sbjct: 479 EQDDLFDTIEIPTARVLAKMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQAGERF-N 537

Query: 235 SRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L   LF   G+ ++  ++     +++ +      + +  +++  R  +   +  
Sbjct: 538 LNSPKQLGHILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQST- 596

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + +  DGR+         + TGR S      QN+P +                 
Sbjct: 597 YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT---------------- 639

Query: 351 ETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                        +R   +    +G      D + +E RVLA ++G+    +AF  G DI
Sbjct: 640 --------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDAHMQEAFKTGYDI 690

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  K F+    D+V+   R   K +   + Y     G +K            +  + 
Sbjct: 691 HSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAKEFIDNYF 750

Query: 464 QNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTA 502
           +       + +    E+                         ++      A+   + G+A
Sbjct: 751 EQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGSA 810

Query: 503 CELVKKAWRA----------KHQGVLQLWKDL 524
            +++K A             K + V+Q+  +L
Sbjct: 811 ADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 842



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 866 VK--LDVPLIADSGWGHNWY 883


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
          Length = 881

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127
           S+FE   F   +      K+          L R  G    +  +  L     +   K  +
Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413

Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180
            + + A +    I S         +    +  +LF  +  R V A    T +L + L   
Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473

Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +        E  L ++   +   G ++D   + +++   +   +++++ I +       +
Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L + LF   G+ ++  ++      +  +        + +D++  R  +   +  
Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + SDG++         ++TGR S      QN+P +                 
Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QALTQTGRLSSVDPNLQNIPIR----------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+
Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
            +T  + F     + V+   R   K +   + Y     G ++            +  + +
Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                          S +  ++      A+   + G+A 
Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806

Query: 504 ELVKKAWRAKHQGVLQL 520
           +++K A     + + + 
Sbjct: 807 DILKIAMIELDKRLKET 823



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/573 (13%), Positives = 178/573 (31%), Gaps = 78/573 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW ++       T    +  DL +    + +        F+R  +    LG+D+P+
Sbjct: 336 IIGFAWGNDKAIYV-STNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGVDLPA 390

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   S LA+                         +     A + KG   + P      
Sbjct: 391 PAF--DSRLAKYLLSTVDDNELSTIAQLYTDYVLDSD----EAVYGKGVKRAVPEKAVLL 444

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +H+    +   + ++ +       ++   L D E+ L  +   +   G  +  + + +++
Sbjct: 445 SHLARKIVVLNHSEKVMLGKLTEHQQASLLFDMEQPLANVLAKMEIAGISVKKETLQEME 504

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           +        L ++I  L      +      L   LF    +      +       +   +
Sbjct: 505 KANQAAIDNLTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVL 563

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + +  DG++         ++TGR S    
Sbjct: 564 ERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKDGKIHTRY-LQDLTQTGRLSSVDP 622

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGI 384
             QN+P                                +R   +     + L+ +D + I
Sbjct: 623 NLQNIP------------------------VRLEQGRLIRKAFVPETADEVLLSSDYSQI 658

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 659 ELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 718

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQA 478
              G A             ++ + +       + +                         
Sbjct: 719 SDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRELPDI 778

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            + +  ++      A+   + G+A +++K A     + +++             +    +
Sbjct: 779 NARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVE--------GKFKTKMLLQV 830

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +  VP+  +   ++ V   + S+  L   
Sbjct: 831 HDEIILEVPKDELEAIEKLVKETMESAIELSVP 863


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 149/474 (31%), Gaps = 66/474 (13%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +    LGID+P+  +   + LA+                    L    +       + KG
Sbjct: 380 VLLSHLGIDLPTANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKG 433

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197
           +  + P      +H+   ++      + V   +        L  D E  L  +   +   
Sbjct: 434 AKRAVPEKEVLLSHLAK-KVKVLQVAKPVMLEKLAEHSQSELLFDMELPLANVLAKMEIA 492

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++    + ++         KL ++I ++      +      L + LF    + L    
Sbjct: 493 GIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFEKMELPLEYTK 551

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFY 312
           +       +   + +LA    +         I KL +     L + +  DG++       
Sbjct: 552 KTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRYV-Q 610

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS- 371
             ++TGR S      QN+P                                +R   + S 
Sbjct: 611 DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPST 646

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRA 430
               L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R 
Sbjct: 647 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------- 473
             K +   + Y     G +             +  + +       +              
Sbjct: 707 NAKAVNFGIVYGISDFGLSNNLGISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYV 766

Query: 474 --------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                   +     S +  +++     A+   + G+A +++K A     + +++
Sbjct: 767 ETLFHRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 93/522 (17%), Positives = 177/522 (33%), Gaps = 99/522 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +   G+++  +++  T +LA        +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183
                   K   +    +  +A          +Y   D   T       L     PL + 
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEAPLLEL 484

Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   +   + + G ++D + +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNCEFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290
            +   LF    +      +         L ++L  H  I ++     L +L S+    +L
Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDYRELAKLYSTYCEPLL 603

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL         + R+  +    G + TGR S      QN+P                   
Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+ 
Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + + E R++ K +   L Y  G    ++  K  A      ++++ +N 
Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750

Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506
            S   + +  + E+                            Y   ++   L G+A +++
Sbjct: 751 TSIKKYFETVKNEAKQNGFITTLNSRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810

Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           K A     +        +LQ+  +L       + E      R
Sbjct: 811 KLAMLEIDKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVS 634
            Y +   ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ 
Sbjct: 778 RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIF 837

Query: 635 ETPDTPYFS-VGTLCSLM 651
           E  D    + V     +M
Sbjct: 838 EVKDDLCENFVKKTRDIM 855


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 132/381 (34%), Gaps = 64/381 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G+ +D   +    E + ++   ++++IV        +      L
Sbjct: 471 EVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKLAAIEQEIVDAVGYPF-NLNSPKQL 529

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF+  G+     ++    T   +L        A D +L     S       + L + 
Sbjct: 530 GEALFVKLGLPHGKKTKTGWSTSADVLDKLRGAHPAIDALLGYRKLSKLKSTYTDGLLKV 589

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DGR+  +      +RTGR S      QN+P +                         
Sbjct: 590 IAPDGRIHSSFNQVE-TRTGRISSTEPNLQNIPVRS------------------------ 624

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G  LV AD + IE R+LA IA +   I AF N EDI+  T ++ F 
Sbjct: 625 AEGRELRRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVFG 684

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            P + V+   R+  K +   + Y  GA    +            ++ + Q       + +
Sbjct: 685 MPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQDIGVSVKEADSYIKGYLQKFSGVRDYME 744

Query: 475 WEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAW--- 510
               E+H                        M+      A    + GTA +++K A    
Sbjct: 745 RVIREAHEKGYVETLFGRRRVLPELLSSNHNMRAFGERVARNTPIQGTAADIIKIAMVRV 804

Query: 511 -----RAKHQG--VLQLWKDL 524
                R + Q   +LQ+  +L
Sbjct: 805 RDRLEREQMQSALILQVHDEL 825



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642
            R +G ++  N  +Q  + DI+   M               ++L VHDE++ E P+    
Sbjct: 776 MRAFGERVARNTPIQGTAADIIKIAMVRVRDRLEREQMQSALILQVHDELIVEAPEDEAA 835

Query: 643 SVGTLCS 649
             G +  
Sbjct: 836 RAGQILE 842


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 95/535 (17%), Positives = 175/535 (32%), Gaps = 83/535 (15%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D  E +      L   L D     V H+S   R+ F           R    + LA    
Sbjct: 368 DPAELAESDERALAAWLADPARPKVLHDSKHARLAFAARGWSLAGVAR---DTELAAYLA 424

Query: 105 LPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
            P   S     LAL +     +++  +     F     D    +  +   +QA       
Sbjct: 425 RPDQRSYDLTDLALRYLHRELRVDAPETGQLTFDGLGDDG---EAEQNLMLQARATLDLA 481

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              D E +R+  +    ++  E  L  +   +   G   DLD + +L+   A E K   +
Sbjct: 482 DAIDAELSRDGEQSARLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQ 541

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSH---SNITQ 272
                      +      L+  LF   G+      +         L+ + +      +  
Sbjct: 542 GAYAAVGREF-NLGSPKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEH 600

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L +   + +L ++      ++ L ++VS DGR+  T +   A+ TGR S      QN+P 
Sbjct: 601 LLRHRDVAKLKTT------VDGLLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIPI 653

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391
           +                              +R   +   G + L+ AD + IE R++A 
Sbjct: 654 RT------------------------EEGRRIRRAFVVGKGFECLLTADYSQIEMRIMAH 689

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           ++ +D  I+AF +G D +  T +  F  P+ +V+ +QR   K M   L Y     G ++ 
Sbjct: 690 LSSDDKLIEAFNSGHDFHAATASSVFGVPVAEVTADQRRKIKAMNYGLAYGLSAFGLSQQ 749

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQ 486
               A      +  +         +     A + H                        +
Sbjct: 750 LGITAEEARGLMDNYFAGFGGVRDYLQEVVARARHDGYTSTILGRRRYLPDLVSDNRQRR 809

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535
           D     A+   + G+A +++K A      G        ++   + +     V  G
Sbjct: 810 DMAERMALNAPIQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPG 864



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M          G    ++L VHDE+V E       ++  L  S M + 
Sbjct: 821 IQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGERDTLEALVRSQMGEA 880


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 92/522 (17%), Positives = 178/522 (34%), Gaps = 99/522 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +   G+++  +++  T +LA        +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183
                   K   +    +  +A          +Y   D   T       L     PL + 
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLETPLLEL 484

Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   +   + + G ++D + +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290
            +   LF    +      +         L ++L  H  I ++     L +L S+    +L
Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLL 603

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL         + R+  +    G + TGR S      QN+P                   
Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+ 
Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + + E R++ K +   L Y  G    ++  K  A      ++++ +N 
Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750

Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506
            S   + +  + ++                            Y   ++   L G+A +++
Sbjct: 751 TSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810

Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           K A    ++        +LQ+  +L       + E      R
Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
            V  + K++  I   S R+           Y +   ++ M+   Y  +   +I+Q  + D
Sbjct: 759 TVKNKAKQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAAD 808

Query: 609 ILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
           ++   M    K       ++L +HDE++ E  D    + V     +M
Sbjct: 809 VIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 132/398 (33%), Gaps = 61/398 (15%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  RG  +D   + +L      +         +L +    +      L+ 
Sbjct: 479 EVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQLQK 538

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSEAV 299
            LF   G+     ++    +  +     Q   +        +     K    ++ L  A+
Sbjct: 539 VLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKSTIDGLINAI 598

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DGR+R T    GA+ TGR S      QN+P +  +                       
Sbjct: 599 DGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPVRTEA----------------------- 634

Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +RS      G   L+ AD + IE RV+A ++ +   I+A+  GED++    ++ F+
Sbjct: 635 -GRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYVGSRVFD 693

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            P+D+V+ E R   K +   L Y     G ++            ++ +         + D
Sbjct: 694 VPVDEVTPELRRRVKALSYGLVYGLSAFGLSQQLGISPGEAKGIMENYFDRFGGVKRYLD 753

Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  S +   ++     A+   + GTA +++K A    
Sbjct: 754 KVVEAAKETGYTETLYGRRRYLPELASSNRVARENAERAALNAPIQGTAADIIKLAMLRV 813

Query: 514 HQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545
            + +       ++   + +     +  G     +++  
Sbjct: 814 DRALRNANLKSRVLLQVHDELVLEIAPGELEQIQQLLE 851



 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655
           +Q  + DI+   M    +          ++L VHDE+V E        +  +  L+ +N 
Sbjct: 798 IQGTAADIIKLAMLRVDRALRNANLKSRVLLQVHDELVLEI---APGELEQIQQLLEENM 854

Query: 656 SWAKGL--PLK 664
             A  L  PL 
Sbjct: 855 DSAASLRVPLD 865


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 198/594 (33%), Gaps = 112/594 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP----SD 56
           +D E+         G+   A++A I   ++  ++        T         +       
Sbjct: 313 LDKESIIAFDTETTGLD--AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKK 370

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
            ++ + +  V+   HN  ++  + +    + +  + +  T +LA        +    LAL
Sbjct: 371 AIELIFNHFVI--GHNLKYDFKIIQNNFNLTL-PQEYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE---- 172
               + T   E         K   +    +  +A          +Y   D   T      
Sbjct: 428 RLFNYETLHFES------LVKKGENFTSVELEKA---------CKYAAEDAYITLRFYLY 472

Query: 173 -LFKRLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            L     PL +     E D   +   I + G ++D + +  L +    E K L E+I  L
Sbjct: 473 FLKNLETPLLELAKTCEFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIYIL 532

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLIL 279
            +    +      +   LF    +      +         L ++L  H  I ++     L
Sbjct: 533 CEDRF-NLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYREL 591

Query: 280 NRLASSG-SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
            +L S+    +LKL         + R+  +    G + TGR S      QN+P       
Sbjct: 592 AKLYSTYCEPLLKL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----- 641

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G  +   +SC +A  G   +  D + IE R+LA  + ++  
Sbjct: 642 -------------------GQYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKL 682

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           + AFAN EDI+V T    F     + + E R++ K +   L Y  G    ++  K  AS 
Sbjct: 683 LNAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEASL 738

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494
               ++++ +N  S   + +  + E+                            Y   ++
Sbjct: 739 AKSYIEKYFENFTSIKKYFEKIKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI 798

Query: 495 KDKLIGTACELVKKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
              L G+A +++K A    ++        +LQ+  +L       + E      R
Sbjct: 799 NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDKLCENFVKKTR 852



 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           K++  I   S R+           Y +   ++ M+   Y  +   +I+Q  + D++   M
Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAM 814

Query: 615 KNATK---NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
               K       ++L +HDE++ E  D    + V     +M
Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDKLCENFVKKTRDIM 855


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score =  219 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 95/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-----CTSVLARTNGLPS--SLKNAC 113
           L DE +  V H         KK L   + S+ W        + LA     P   S K   
Sbjct: 384 LADENIHKVGH-------SLKKAL-HGLRSRGWRLAGLVMDTELAAYLVRPGQRSFKLDD 435

Query: 114 LALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L L +   E  ++  EG   ++     S +                         + A  
Sbjct: 436 LVLRYLGKELRSEGVEGDGQLSLLDTDSDNEIVRRELVR------ARAVLELSSALSAEL 489

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                   L+D E  L  +   +   G  +D+D++ +L+   A   K+  E    +    
Sbjct: 490 AAIGATTLLADIELPLLSMITDLEAAGIAVDIDVLTELEAHYANRVKQATEQAYSVIGKQ 549

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNR 281
           I +      L++ LF   G+     ++           TL     H  +  L +     +
Sbjct: 550 I-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQTLYEKTEHPFLQYLLEHRDATK 608

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L S+      +  L +AV+ DGR+  TL     + TGR S      QN+P +        
Sbjct: 609 LRST------VEGLIKAVADDGRIHTTL-HQTITATGRLSSVDPNLQNIPVRT------- 654

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +   G  +L+ AD + IE R++A ++ ++  I+
Sbjct: 655 -----------------DEGRRIREAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIE 697

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +G D +  T A+ F+    +V+ EQRA  K M   L Y     G ++  +       
Sbjct: 698 AFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMNYGLAYGLSAYGLSQQLRISTEEAR 757

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             + ++         +                            S +   ++     A+ 
Sbjct: 758 ALMDEYFLRFGGVRDYLHSVVERAAKEGYTETIFGRRRYLPDLTSTNRQRREMAERMALN 817

Query: 496 DKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535
             + G+A +++K A    H+         ++   + +     V +G
Sbjct: 818 APIQGSAADIIKVAMLGVHRALAEAGLRSRVLLQVHDELMLEVADG 863



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 396 DWKIKAFANGEDIYVT-----TYA-KAFNTPIDKV-----SKEQRAIGKVMELALGYQGG 444
           +  IKA A+   I+ T     T   +  +   +       + E R I +   +  GY   
Sbjct: 614 EGLIKAVADDGRIHTTLHQTITATGRLSSVDPNLQNIPVRTDEGRRIREAFVVGEGYAEL 673

Query: 445 AKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                +         L      +++  +  D+  A +  ++  D  P     ++      
Sbjct: 674 MTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVD--PTEVTGEQRAKIKA 731

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                A+     G+ Q  +  TE    ++ E              L     +  +H V+ 
Sbjct: 732 MNYGLAYGLSAYGLSQQLRISTEEARALMDE------------YFLRFGGVRDYLHSVVE 779

Query: 564 SSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNG 621
            + +  Y++ + G   YL   TS   + R    ++  N  +Q  + DI+   M    +  
Sbjct: 780 RAAKEGYTETIFGRRRYLPDLTSTNRQRREMAERMALNAPIQGSAADIIKVAMLGVHRAL 839

Query: 622 Y------DIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
                   ++L VHDE++ E  D  +  V  L    M 
Sbjct: 840 AEAGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMG 877


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score =  219 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 103/573 (17%), Positives = 170/573 (29%), Gaps = 111/573 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQ-SAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            A A  D+     D      A+    L   L D     V H                   
Sbjct: 361 IALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVK---GPLLAVWARGWDL 417

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
              +  + LA    LP   S   A LA+ +     K    +                   
Sbjct: 418 AGVVSDTALAAYLALPGQRSFDLADLAVRYLRRELKDSAAEE-------------TQLTL 464

Query: 149 RANHVQAWQLFGEYCKRDV---EATRELFKRLIPLSD----------GERDLWLLDQTIN 195
                    L  E    DV    A  +L   L  L             E  L  +   + 
Sbjct: 465 DGMGPSEEDLAREAAHADVLKAVAVNDLSDALDSLLGQRGGDALLGGIELPLTFVLARME 524

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
            RG   DLD + +LQ   A        +   +    + +      L+  LF   G+    
Sbjct: 525 QRGIAADLDFLHELQREFADGVAAAAAEAYAVIGREV-NLGSPKQLQAVLFDELGLPKTK 583

Query: 256 MSEGT----------LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             +            L +   H  +  L +   + RL +       ++ L   V   GR+
Sbjct: 584 KIKSGYTTDAEALTNLLAQTGHPFLEHLLRHRDVTRLRTV------IDGLIPMVDDGGRI 637

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T Q   A+ TGR S      QN+P +                              +R
Sbjct: 638 HTTFQQTIAA-TGRLSSIDPNLQNIPIRT------------------------AEGRRIR 672

Query: 366 SCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              +  +G + L+ AD + IE R++A ++G+   I+AF +GED++    ++A++ PI+ V
Sbjct: 673 QAFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDV 732

Query: 425 SKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474
             E R   K M   L Y     G A   +         +  + +       + D      
Sbjct: 733 DPEMRRRIKAMSYGLAYGLSAYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDA 792

Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV-- 517
                               S +   +      A+   + G+A +++K A     Q +  
Sbjct: 793 RQTGYTETTLGRRRYLPDLTSDNGQRRQMAERMALNAPIQGSAADVIKVAMLRVEQAIAD 852

Query: 518 --------LQLWKDLTEGFACVVQEGGSISARR 542
                   LQ+  +L    A   +E      RR
Sbjct: 853 EGLRSRMLLQVHDELVLEVAPGEREALETLVRR 885


>gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score =  219 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 79/508 (15%), Positives = 167/508 (32%), Gaps = 86/508 (16%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L + L D+T+     +     +   +   +D+ ++      +LA       + +N    
Sbjct: 366 PLHKMLEDKTIKKNVFDIKRTYVGLHR---LDLKAEGLDYDMLLASYL---VNNENNSND 419

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L    HL      K  +  + KG   + P D          + F     +     +   +
Sbjct: 420 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPNDN---------EFFEHLAAKVAVIEKLKTQ 470

Query: 176 RLIPLSDGERD-LWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            L  L D E+D L+         +   +   G +++  ++ +L    A + ++L+  I +
Sbjct: 471 LLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQ 530

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF   G+  +  ++    + +    + QL     +       
Sbjct: 531 QAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDY 587

Query: 287 SAILKLN-----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             I K+       L + +  DGR+         + TGR S      QN+P +        
Sbjct: 588 RQIAKIQNTYVKGLLDCIQPDGRIHTRY-LQTLTTTGRLSSVDPNLQNIPTKT------- 639

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                 +R   + S  +G      D + +E RVLA ++G++   
Sbjct: 640 -----------------EEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQ 681

Query: 400 KAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           +AF +G DI+  T  K F+    D+V+   R   K +   + Y     G +K        
Sbjct: 682 EAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQ 741

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493
               ++ + +       + D    ++                      +  ++      A
Sbjct: 742 AKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTA 801

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLW 521
           +   + G+A +++K A     + + +L 
Sbjct: 802 INSPIQGSAADIIKIAMINMQKKLDELH 829



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 866 VK--LDVPLIAD 875


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score =  219 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 99/588 (16%), Positives = 199/588 (33%), Gaps = 96/588 (16%)

Query: 7   DIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D ET S    + K+  +++      A     A+++   P ++           D    + 
Sbjct: 337 DTETTSLDTKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQV--------SIEDAKSAIN 388

Query: 63  DETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
                  +  N  ++  + K     DI    +  T +LA      S +    LA N+ +H
Sbjct: 389 KLNNFKLIVQNFKYDFDIIK--FNFDIELNLFADTIILAWLLDSSSKVGLDALAKNYFDH 446

Query: 122 LTKMEEGKALIAR---FCKGSIDS---PPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
              M   K ++ +   F    I +      +     +   ++L  E+ K++ E   ++  
Sbjct: 447 --TMIAFKDVVKKGDDFSTVDISNACNYAAEDALMTYKIYFKLLEEFKKQNCEHLLKIAN 504

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 D E     +   + + G +ID  ++  L+    +  ++L + I +L      + 
Sbjct: 505 ------DYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHELAGTKF-NI 557

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF   G+      +    T + +L+    +     +IL+   +       +
Sbjct: 558 NSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVILDYREAYKLQSTYI 617

Query: 293 NTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             L E  S+D   ++  +    G + TGR S      QN+P                   
Sbjct: 618 EPLLELASNDSENKIYTSFLQTG-TATGRLSSKNPNLQNIP------------------- 657

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                    A   +R   IA +G KLV  D + IE R+LA  + +   + AF +  DI+ 
Sbjct: 658 -----VKSSAGREIRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKALVDAFNSDLDIHS 712

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T  K F    ++ + ++R I K +   L Y  G    A   K       + +  + +  
Sbjct: 713 QTAVKIFG---EEKASQKRNIAKTINFGLLYGMGSKKLADTLKITPKEAKVYIDSYFEAF 769

Query: 467 KSTSTFE--------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            +   +                           + +   +  Y   AV  K  G+A +L+
Sbjct: 770 TNVKEYMKSIEDFALENGYVETLIKRRRIFDFNAANTMQRIGYLREAVNTKFQGSAADLI 829

Query: 507 KKAW---------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           K +              + +LQ+  +L        Q+  +   +++  
Sbjct: 830 KLSMIKIFEKYKNNEDLKMILQIHDELIFEVKNEKQDEITNDLKKIME 877


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 104/546 (19%), Positives = 190/546 (34%), Gaps = 90/546 (16%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I L A++     V        +++   L   L D+ ++ V HN+ F+ + F ++ G  + 
Sbjct: 23  IKLIAFSKGLNEV-----VTTTSVDERLKSILNDKNIIKVFHNAKFD-VGFFQSKGYRVN 76

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              + CT ++A+  G               E L+     KAL  ++    +D        
Sbjct: 77  --NYHCTLLMAQVLG--------------EEKLSL----KALAKKYLDVDMDKSMQHSDN 116

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS---------DGERDLWLLDQTINDRGYR 200
               +  Q   +Y  +DVE TR L+ +L+ L          + ER        +   G  
Sbjct: 117 WQETEITQEHIDYAVKDVEHTRALYYKLLDLLVENNLLTVYERERRALPAIVMLESNGIN 176

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
           ++ D      +   +   +L+  I  L +    +      L     +  GI L   S+  
Sbjct: 177 MEFDKWNARLDDDRRLAVELEIRIKDLLNRKELNLNSPKQLVE-AIVEYGIKLHSTSDDE 235

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L        + +L +     RL +          L + + +DGR+R   +  G SR+GR 
Sbjct: 236 LAKYSDEHEVIKLIRKY--RRLQAKI--KTYGEKLKKFIDNDGRIRAHWRLIG-SRSGRM 290

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      Q +P                                 R   +A  G KL+ +D
Sbjct: 291 SCNNPPLQAMPGNS------------------------------REFFVADEGYKLIGSD 320

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA I+ ++  I  F NG D+++ T +  F  PID++SKE+R + K +   + 
Sbjct: 321 YSQIELRVLASISKDETLISYFNNGIDLHLGTASLIFKKPIDEISKEERQVAKSLNFGIV 380

Query: 441 YQ---GGAK------VFKTMASHCGLDLQQFSQNVKSTSTFED-------WEQAESHHLW 484
           Y     G +         T          +F          +D        +        
Sbjct: 381 YGITAYGIQKNLRKSGVDTSLEEAEKYRIEFLNVYPKVKELQDSLLKADYIKTLGGRRWQ 440

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL---TEGFACVVQEGGSISAR 541
                    +   + G+A E +K+A     + + + W+ +    +     V E  +  A+
Sbjct: 441 GGSLTMTQRLNLPIQGSAAEGLKEALALLVERMKESWRLVAVIHDEILLEVPEDEAEEAK 500

Query: 542 RVANVP 547
            +    
Sbjct: 501 NILESC 506



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 569 VYSDVKG--DCSYLNTATSQLMRERTYGGKLTE----NI-VQAISRDILCEGMKNATKN- 620
           VY  VK   D          L   R  GG LT     N+ +Q  + + L E +    +  
Sbjct: 414 VYPKVKELQDSLLKADYIKTLGGRRWQGGSLTMTQRLNLPIQGSAAEGLKEALALLVERM 473

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              + +V  +HDEI+ E P+        +  
Sbjct: 474 KESWRLVAVIHDEILLEVPEDEAEEAKNILE 504


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 180/522 (34%), Gaps = 99/522 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +   G+++  +++  T +LA      S +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSSRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183
                   K   +    +  +A          +Y   D   T       L     PL + 
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLDFLKNLETPLLEL 484

Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   +   + + G +++ + +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSG-SAIL 290
            +   LF    +      +    T + +L      H  IT++     L +L S+    +L
Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILDYRELAKLYSTYCEPLL 603

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL         + R+  +    G + TGR S      QN+P                   
Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+ 
Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + + E R++ K +   L Y  G    ++  K  A      ++++ +N 
Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750

Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506
            S   + +  + E+                            Y   ++   L G+A +++
Sbjct: 751 TSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810

Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           K A    ++        +LQ+  +L       + E      R
Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           K++  I   S R+           Y +   ++ M+   Y  +   +I+Q  + D++   M
Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAM 814

Query: 615 KNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
               K       ++L +HDE++ E  D    + V     +M
Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 133/370 (35%), Gaps = 54/370 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            S+ +  +  +   +   G ++D + + +L      E  +L+E+I  L+     +     
Sbjct: 473 YSNIDLPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFALSGTKF-NIGAPK 531

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293
            L   LF    +     S  T         + +L+K      DL+L     +       +
Sbjct: 532 QLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRWRQLTKLKNTYTD 591

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +  R   T     ++ TGR S      QN+P +                    
Sbjct: 592 SLPKQIDNITRRVHTTFLQTSTTTGRISSQEPNLQNVPIRS------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   I   G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 633 -----SEGNKIRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIHTQTA 687

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN P DK++ + R   K +   + Y     G A+      S     ++++    K  
Sbjct: 688 CQIFNLPKDKLTSKHRRKAKAINFGIIYGISAFGLAQQLNVTNSEAAEYIKKYFAEYKGV 747

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A                     H+  ++      A+   + GT  +++K A 
Sbjct: 748 QEYIEQTKAFVSSNGYVTNFFGRKCFLPSIHNKKLKQFAERAAINAPIQGTNADIIKIAM 807

Query: 511 RAKHQGVLQL 520
               Q + +L
Sbjct: 808 INLDQEIEKL 817


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 178/522 (34%), Gaps = 99/522 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +   G+++  +++  T +LA        +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183
                   K   +    +  +A          +Y   D   T       L    IPL + 
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEIPLLEL 484

Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   +   + + G ++D + +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYTLCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSG-SAIL 290
            +   LF    +      +    T + +L      H  IT++     L +L S+    +L
Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYRELAKLYSTYCEPLL 603

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL         + R+  +    G + TGR S      QN+P                   
Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   +SC +A +G      D + IE R+LA  + ++  + AF N EDI+ 
Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTNDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + + E R++ K +   L Y  G    ++  K  A      ++++ +N 
Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750

Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506
            S   + +  + E+                            Y   ++   L G+A +++
Sbjct: 751 TSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADII 810

Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           K A    ++        +LQ+  +L       + E      R
Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           K++  I   S R+           Y +   ++ M+   Y  +   +I+Q  + DI+   M
Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADIIKLAM 814

Query: 615 KNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
               K       ++L +HDE++ E  D    + V     +M
Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/545 (16%), Positives = 158/545 (28%), Gaps = 75/545 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D       H+     +   +              + LA    LP   S   A LAL +
Sbjct: 396 LADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALPGQRSFDLADLALRY 452

Query: 119 SEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                K        +     G  D    D  RA               D +  R    RL
Sbjct: 453 LHRELKSDAPSNGQLTLDGSGEADEAEADAIRARAALELAD-----ALDGDLERRSAARL 507

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             L + E  L  +  T+   G   D D +L+LQ+    E   +      +      +   
Sbjct: 508 --LREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVSDVAAQAHGIVGRTF-NLGS 564

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----N 293
              L+  LF    +      +    +            D  L  +      + +L    +
Sbjct: 565 PKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLKTVVD 624

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L   +   GR+  T     A+ TGR S      QN+P +                    
Sbjct: 625 SLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRT------------------- 664

Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   +   G   L+ AD + IE R++A ++G+   I+AFA+GED++   
Sbjct: 665 -----PQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFV 719

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            A+AF  P+ +V  E R   K M   L Y     G A             +  +      
Sbjct: 720 AAQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGG 779

Query: 469 TSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVK 507
              F      ++                          +      A+   + G+A +++K
Sbjct: 780 VRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIK 839

Query: 508 KAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            A     + +       +L   + +     +  G       +              + + 
Sbjct: 840 IAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEALVRAEMGSAYEMSVPLEVS 899

Query: 562 LPSSR 566
           + + R
Sbjct: 900 VGAGR 904



 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 8/122 (6%)

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594
               AR   +         +  +  V+  +RR  Y++ + G   YL   TS   + R   
Sbjct: 762 APDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMA 821

Query: 595 GKLTENI-VQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            ++  N  +Q  + DI+   M        +      ++L VHDE+V E        V  L
Sbjct: 822 ERMALNAPIQGSAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEAL 881

Query: 648 CS 649
             
Sbjct: 882 VR 883


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 170/481 (35%), Gaps = 66/481 (13%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNFS 119
            DE+      +S    ++  +  GI++    +   ++LA     P++     A +A ++ 
Sbjct: 366 EDESQKKWVFDSK-RSVVALRWQGIELKGAEF--DALLAAYIINPANTYDDVASVAKDYG 422

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            H+   +E     A + KG+  + P +   A H+       +  +  +    E   +L  
Sbjct: 423 LHIVSSDE-----AVYGKGAKRAVPGENELAMHLVRKAAAVDSLREKLLQELENNDQLEL 477

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L L+   +   G ++D+  + ++ E +    K+ +E I ++      +     
Sbjct: 478 YEELELPLALILGEMESIGVKVDVGRLERMGEELGARLKEYEEKIHEIAGEPF-NINSPK 536

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF   G+ +V  ++    T   +L            IL            +  L 
Sbjct: 537 QLGVILFEKLGLPVVKKTKTGYSTSADVLEKLADQHDIVSYILQYRQIGKLQSTYIEGLL 596

Query: 297 EAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + +  D  ++         ++TGR S      QN+P +                      
Sbjct: 597 KVIRKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------------- 633

Query: 356 PLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   + S     +  AD + IE RVLA I+ ++  I+AF N  D++  T  
Sbjct: 634 --LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAM 691

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             F+   D+V+   R   K +   + Y     G ++            ++++ ++ K   
Sbjct: 692 DVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLESFKGVK 751

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                       +  S +  ++      A+   + G+A +++KKA
Sbjct: 752 VYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKA 811

Query: 510 W 510
            
Sbjct: 812 M 812



 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550
             +   A + V  A R +    + G++    D        + ++  +    R     + V
Sbjct: 691 MDVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLESFKGV 750

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609
               +  V               +    Y+   TS+    R++  +   N  +Q  + DI
Sbjct: 751 KVYMEESVQEAKQKGYVTTLMQRR---RYIPELTSRNFNLRSFAERTAMNTPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           + + M +             ++L VHDE++ E P      +  L   +M
Sbjct: 808 IKKAMIDMAAKLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVM 856


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/500 (17%), Positives = 170/500 (34%), Gaps = 69/500 (13%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             + S +++ L    +     N+  E I+    LG+ I +  +    V    +   +  +
Sbjct: 385 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 443

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRANHVQAWQLFGEYCKRDVE 168
            A LA  F+  L    E      +F     +     +   +A+ +            D  
Sbjct: 444 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSD-H 502

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              EL++++      E  L  +  ++   G ++D   + KL +   Q   +L++ I +  
Sbjct: 503 QQAELYRQI------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEA 556

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L   LF+   I  +  ++       + + + +LA+      L      
Sbjct: 557 GQEF-NINSPKQLADLLFVHMKIPPIKKTK--TGYSTAANVLEELAEKYPFVGLILQYRQ 613

Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KLN+     L E V+ D     T      ++TGR S      QN+P +          
Sbjct: 614 LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDR---------- 663

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G ++  +D + IE RVLA + G++   KAF
Sbjct: 664 --------------DEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAF 709

Query: 403 ANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
            +GEDI+  T    F    D+ ++ +QR   K +   + Y     G A+           
Sbjct: 710 ESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGISRIEGKE 769

Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496
            +Q +         + D   A +H                     +  ++      A   
Sbjct: 770 IIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTATNT 829

Query: 497 KLIGTACELVKKAWRAKHQG 516
            + G+A +++K A     Q 
Sbjct: 830 PIQGSAADIIKIAMIKMQQA 849



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGK 596
           I  + +         + K  +  ++  + +  Y + +     YL    S+    R++  +
Sbjct: 765 IEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAER 824

Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
              N  +Q  + DI+   M    +          ++L VHDE++ E P      +  L 
Sbjct: 825 TATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELV 883


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 133/399 (33%), Gaps = 63/399 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  +  +   +   G ++D   +  +     +   ++++ I +       +      L
Sbjct: 485 DIEIKIAFVLAHMEINGIKVDAATLEGMGSKFKERLAEIEQTIFQEAGEEF-NIGSPKQL 543

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF    + ++  ++    + +    + +LA D  + +       I KL     + L 
Sbjct: 544 GKILFEKLRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLDYRQISKLQSTYVDGLL 601

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +  D     T      ++TGR S      QN+P +                       
Sbjct: 602 KVIHPDDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS---------------------- 639

Query: 357 LGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   I S  G ++  +D + IE RVLA I  +     AF NGEDI+ TT  +
Sbjct: 640 --EEGRLIRQAFIPSHPGWQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARR 697

Query: 416 AFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            F  P  ++V+ E R   K +   + Y     G A             ++++ +      
Sbjct: 698 IFGLPSNEEVTPELRRQAKAVNFGIVYGISDFGLASNTGITRKQAHQFIERYFEEYPGVK 757

Query: 471 TF----------EDWEQAESHHL-----------WMQDQYPEFAVKDKLIGTACELVKKA 509
            +            + +  +H              ++      A+   + G+A +++K A
Sbjct: 758 KYTEDIVEFARNHRYVETIAHRRRYLPDINSKSFNLRSFAERTAMNTPIQGSAADIIKIA 817

Query: 510 WRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVA 544
                  +     ++   + +     V +    + +++ 
Sbjct: 818 MINMADAIKDMKTRMLLQVHDELIFEVPDEELDTVKQLI 856


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 121/369 (32%), Gaps = 57/369 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G   D   + +    +  E   +   I    D    +      L
Sbjct: 521 DLEMPLLRVLLQMERTGLHADAGRLAEQSRELGSEIDCMVATIKADADEDF-NMDSPQQL 579

Query: 242 RMYLFLITGIDLVDMSEGTLK-SILSHSNITQLAK-----DLILNRLASSGSAILKLNTL 295
              LF + G+    +          +   +  LA+      +IL+    +      L+ L
Sbjct: 580 SHVLFDVWGLPTFGLKRTKKGFYSTNAKTLEDLAQQDGRVRMILDYRERAKIKSTYLDAL 639

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              +  DGR+  TL    A+ TGR S      QN+P +                      
Sbjct: 640 PADIRRDGRIHTTLNQTVAA-TGRLSSSAPNLQNIPTRS--------------------- 677

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   VR+      G   +  D + IE R+LA ++ +   + AF +G D +  T A+
Sbjct: 678 ---ELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAAR 734

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F  P+++V+ + R+  K +   + Y     G A   +   +     + ++ +       
Sbjct: 735 VFGVPVEEVTPQLRSRAKAVNFGIVYGQQAFGLASSLRIGRAEAQEMIDRYFEAYPGVRA 794

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D                          + +  ++      A+   + GTA +++K A 
Sbjct: 795 YLDQSVDFARKRGYAVTMYGRKRHIRDINARNFQLRSFAERTAMNHPMQGTAADIIKLAM 854

Query: 511 RAKHQGVLQ 519
               + + Q
Sbjct: 855 VRVAERLRQ 863


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E  +  +   +   G  +DL ++  LQ   A + +   E    +    I +     
Sbjct: 496 LADMELPVQHVLAEMETAGIAVDLTMLGGLQSHFADQIRDAAEAAYAVIGKQI-NLGSPK 554

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+     ++                  H  +  L     + RL  +    
Sbjct: 555 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 610

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L  +V+ DGR+  T     A+ TGR S      QN+P +                
Sbjct: 611 --VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 652

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R   +  +G  +L+ AD + IE R++A ++ ++  I+AF  GED+
Sbjct: 653 ---------DAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++AF  PID+V+ E R   K M   L Y     G +   K       + + Q+  
Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFS 763

Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +                         + +S +  +++     A+   + G+A 
Sbjct: 764 RFGGVRDYLMAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 823

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +++K A             K + +LQ+  +L    A   +E      R
Sbjct: 824 DIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGEREQIEALVR 871


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
          Length = 887

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/522 (15%), Positives = 172/522 (32%), Gaps = 95/522 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L DE +     +     +   + LGI +  + +    +LA       + +N   
Sbjct: 365 TNLRHLLEDEQIKKNVFDLKRTMVGLHR-LGIHVHGQDY--DMLLASYL---INNENNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L    HL      K  I  + KG  +  P D          +LF     + V A   L 
Sbjct: 419 DLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDE--------ELFNHLASK-VNAIENLK 469

Query: 175 KRLIP-LSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + L+  L + E+             +   +   G +++   +L+LQ   A   K+L++ I
Sbjct: 470 QPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKI 529

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILN 280
            +       +      L   LF    + ++  ++     +++ +      + +  +++  
Sbjct: 530 YQQAGERF-NLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDY 588

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           R  +   +   +  L + +  DGR+         + TGR S      QN+P +       
Sbjct: 589 RQIAKIQST-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 640

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  +R   +    +G      D + +E RVLA ++G+   
Sbjct: 641 ------------------EEGKQIRKAFVPTNPDGYIF-SCDYSQVELRVLAHVSGDQNM 681

Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            +AF  G DI+  T  + F+    D+V+   R   K +   + Y     G +K       
Sbjct: 682 QEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEF 492
                +  + +       + D     +                         ++      
Sbjct: 742 RAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERT 801

Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           A+   + G+A +++K A             K + V+Q+  +L
Sbjct: 802 AINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843



 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593
           IS +R          ++   +  +   + ++R   Y++       YL    ++    R++
Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
             +   N  +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  
Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857

Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673
           +   +M         +PL A+ G+    Y
Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 431

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 124/378 (32%), Gaps = 60/378 (15%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D E T +    L      E  L  +   +   G R+D   + ++Q   ++  K+++E I 
Sbjct: 17  DSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 74

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNR 281
                   +      L + LF   G+ ++  ++      +  +        +  D++  R
Sbjct: 75  AEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 133

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +   +   +  L + +  D ++         ++TGR S      QN+P +        
Sbjct: 134 QIAKIQST-YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR-------- 183

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +      L+  +D + IE RVLA I+ ++   +
Sbjct: 184 ----------------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKE 227

Query: 401 AFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           AF  G+DI+ +T  + F     + V+   R   K +   + Y     G ++         
Sbjct: 228 AFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQA 287

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              +  + +       + +                          S +  ++      A+
Sbjct: 288 QQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAI 347

Query: 495 KDKLIGTACELVKKAWRA 512
              + G+A +++K A   
Sbjct: 348 NTPIQGSAADILKIAMIE 365


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/527 (16%), Positives = 184/527 (34%), Gaps = 76/527 (14%)

Query: 10   TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67
            T     +   G+  + E+  I L   A +D PV ++D     + ++ + L + L++E V+
Sbjct: 1309 THCGLDIETTGLEVFDEK--IRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVV 1366

Query: 68   CVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             +  N  F+   L      +      +I + +L +   +     N  +    +  L K +
Sbjct: 1367 KIIQNGKFDAKFLMHNKFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQ 1426

Query: 127  EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGER 185
            +           +        +        +L  E C+ ++    ++  + ++P+ D E 
Sbjct: 1427 QNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICRENMGTVNDIENKCILPICDMEL 1486

Query: 186  DLWLLDQTINDRGYRIDLDLV-LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
            +           G  +DL+ +     E++++  ++  +   +L D  I  + Q   L+  
Sbjct: 1487 N-----------GITVDLESLSKSTNEILSELNEETSKLKAELKDEEINVNSQQQVLKAL 1535

Query: 245  LF----LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
                   ++   + + S+  LK+ L+H  +  L     L +L S+         L + ++
Sbjct: 1536 QNKNVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRRLYKLYSAF-----YLKLPQHIN 1590

Query: 301  S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                ++  T      + +GR+S      Q +PRQ                          
Sbjct: 1591 KKTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ-------------------------- 1623

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   I       ++AD   IE ++ A I  +D  +KA+ N  D++  T +     
Sbjct: 1624 --KNIREIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKK 1681

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQA 478
             I  V+KE R I K +   L Y       K  A+          Q      S FE ++  
Sbjct: 1682 AIADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGI 1741

Query: 479  ESHHLWMQDQYP------------------EFAVKDKLIGTACELVK 507
               H  ++                        A+   + GT  +++K
Sbjct: 1742 YRWHNQIKQMRALEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILK 1788



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 576  DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDIVLTVHDE 631
               Y   +  +++       K     VQ    DIL   +    KN       I+L VHDE
Sbjct: 1753 ALEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKNLRPINGKIILCVHDE 1812

Query: 632  IVSETPDT-PYFSVGTLCSLM 651
            I+ E        ++  L   M
Sbjct: 1813 IIIEVDKKYQEDALKILVESM 1833


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/509 (16%), Positives = 168/509 (33%), Gaps = 88/509 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L + L D+T+     +     +   +   +++ ++      +LA       + +N    
Sbjct: 366 PLRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYL---VNNENNSND 419

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L    HL      K  +  + KG   + P D            F E+    V    +L  
Sbjct: 420 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPDD----------NEFFEHLAAKVAVIEKLKT 469

Query: 176 RLIP-LSDGERD-LWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L+  L D E+D L+         +   +   G +++  ++ +L    A + ++L+  I 
Sbjct: 470 PLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIY 529

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +       +      L   LF   G+  +  ++    + +    + QL     +      
Sbjct: 530 QQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILD 586

Query: 286 GSAILKLN-----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              I K+       L E +  DGR+         + TGR S      QN+P +       
Sbjct: 587 YRQIAKIQNTYVKGLLECIQPDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 639

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  +R   + S  +G      D + +E RVLA ++G++  
Sbjct: 640 ------------------NEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHM 680

Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            +AF +G DI+  T  K F+    D+V+   R   K +   + Y     G +K       
Sbjct: 681 QEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 740

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++ + +       + D                          S +  ++      
Sbjct: 741 QAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERT 800

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A+   + G+A +++K A     + + +L 
Sbjct: 801 AINSPIQGSAADIIKIAMINMQKKLDELH 829



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 866 VK--LDVPLIAD 875


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/372 (15%), Positives = 116/372 (31%), Gaps = 58/372 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E+ L  +   +   G  +    + +++        +L ++I  L      +     
Sbjct: 474 LFDMEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPK 532

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294
            L   LF    +      +       +   + +LA    +         I KL +     
Sbjct: 533 QLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVG 592

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + +  DG++         ++TGR S      QN+P                       
Sbjct: 593 LQDFILQDGKIHTRY-LQDLTQTGRLSSVDPNLQNIP----------------------- 628

Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +     + L+ +D + IE RVLA I+ ++  I AF  G DI+ +T 
Sbjct: 629 -VRLEQGRLIRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTA 687

Query: 414 AKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            + F     + V+   R   K +   + Y     G A             ++ + +    
Sbjct: 688 MRVFGIEKTEDVTPNDRRNAKAVNFGIVYGISDYGLANNLGIPRKVAKQYIETYFERYPG 747

Query: 469 TSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + +                          S +  ++      A+   + G+A +++K
Sbjct: 748 IKNYMERVVRDAKDKGYVETLFHRRRELPDINSRNFNIRQFAERTAINSPIQGSAADILK 807

Query: 508 KAWRAKHQGVLQ 519
            A     + ++ 
Sbjct: 808 IAMINLDKALVD 819


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 145/416 (34%), Gaps = 67/416 (16%)

Query: 169 ATRELF-KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           A  E+  K L+ + +  E  L  +   +  +G +ID     K ++ +      L + I +
Sbjct: 493 AMEEIKGKDLLEVLEKTEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLSDLQKKIFE 552

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280
           +      +      L   LF    +D V  ++  L        + +L  D       IL 
Sbjct: 553 IAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGL--STDEEVLEKLKSDGVEIASYILE 609

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               +      ++ L + V S  RL  T    G + TGR S      QN+P         
Sbjct: 610 YRKYAKLKNTYVDALPKLVDSKDRLHTTFNQIGTT-TGRLSSSNPNLQNIP--------- 659

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA +G  L+  D + IE RVLA ++ ++  I 
Sbjct: 660 ---------------VKTDEGMKIRQGFIADSGNVLMGIDYSQIELRVLAELSKDENLIA 704

Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           A+ N ED++  T  K F     ++VS+EQR I K +  ++ Y     G +K         
Sbjct: 705 AYKNNEDLHRVTAKKIFELGEGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGIPQKEA 764

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              + ++ +       FE                       E   S +  +++Q    AV
Sbjct: 765 TDYINRYFEQYPRVKDFERSIIDYAEKNGYTETYFGRRRIIEGIISKNKNIKNQAERMAV 824

Query: 495 KDKLIGTACELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISARRVAN 545
              + GTA E++KK      + +     + L   + +     ++E      R +  
Sbjct: 825 NSVIQGTAAEILKKVMIEIFKVIDGKEDISLLLQVHDELIFEIKEEKVEEYRTIIE 880


>gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG']
          Length = 872

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 134/420 (31%), Gaps = 73/420 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRSSRQ 237
           +   E  L  +   +   G RID   +   +E I    ++L+E+I +L      I S +Q
Sbjct: 473 VQSIEIPLGRILYQMEVLGVRIDRQALESARESIEALSRELEEEIYRLAGSRFTILSPKQ 532

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                  L+   G+      +    T +  L+  +      + IL            ++ 
Sbjct: 533 V---GEILYGKLGLPTARKGKTGYSTDEETLTRLSALHPLPEKILAYRQMKKLLSTYVDP 589

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           ++  + + GRL G       + TGR S      QN+P +                     
Sbjct: 590 IARGIDAQGRLHGQFN-QTVTATGRLSSSNPNLQNIPMRS-------------------- 628

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                A   +R C IA   + L+ AD + IE R+LA  + +   +  F   EDI+  T  
Sbjct: 629 ----PAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERNEDIHARTAR 684

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470
             F  P   V+ E R   K +   + Y   A    +     +      + ++        
Sbjct: 685 LLFGDP---VTPETRRKAKTINFGILYGMSAFSLSQDLGVESQEAQAFIDRYFGAFPKVG 741

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
              D                       +  +     ++     AV   L G+A +L+KK+
Sbjct: 742 PLFDSILEEAKKTGEVRTILGRKRRIPELFASDRRSREYGERMAVNTVLQGSAADLIKKS 801

Query: 510 W------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                  R     +  L   + +     V+E     A         +    +  + + +P
Sbjct: 802 MVDFGQVRKDRPEIGDLLVQVHDELLFEVREDNLDEA------SGTIRSLMEGALRLKVP 855


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/569 (15%), Positives = 151/569 (26%), Gaps = 96/569 (16%)

Query: 26  EQAVITL---CAYAWDDEPVKLWDRTEQ------------SAMPSDLLQYLRDETVMCVA 70
           E A   L    ++A     V+                    A       +L D       
Sbjct: 326 EDARTALAADYSWALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKAL 385

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL---NFSEHLTKMEE 127
           H +     + +               + LA     P         L        L     
Sbjct: 386 HIAK---QVMRAFAERGWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEYLGRSLAPATA 442

Query: 128 GKALIARFCKGSIDSPPYDC----TRANHVQAWQ-LFGEYCKRDVEATRELFKRLIPLSD 182
                          P        TRA  V     LF                      D
Sbjct: 443 QAETGQLSFDADEPDPTAGAQALMTRARAVHDLAGLFDTRLAEVGAVEL--------FHD 494

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  +  L   +   G   D + +  L+   A E ++  E+          +      L+
Sbjct: 495 MELPIAELLARMERHGIAADREWLRGLEAQFAAEIQRCVEEAHAAAGREF-NLGSPKQLQ 553

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSEA 298
             LF   G+      +    +               L  +        KL T    L + 
Sbjct: 554 EILFGDLGLPKTKKIKTGYTTDADALTWLATQTTNELPVILLRHRDQAKLRTTVEGLLKT 613

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           VS  GR+  T     A+ TGR S      QN+P +                         
Sbjct: 614 VSPQGRIHTTFNQMVAA-TGRLSSQDPNLQNIPVRT------------------------ 648

Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +   G   L+ AD + IE R++A ++ ++  I+AF +GED++ T  ++ F
Sbjct: 649 EEGRAIRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVF 708

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                 V  E R   K M   L Y     G ++      +     +  + +       + 
Sbjct: 709 AVAPADVDAEMRRKIKAMSYGLAYGLSAYGLSQQLGIKPAEAQGLMDTYFERFGGVRDYL 768

Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                E+                      +   ++     A+   + G+A ++VK A   
Sbjct: 769 HNVVEEARAVGYTETLLGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIVKIAMLR 828

Query: 513 KHQGVL------QLWKDLTEGFACVVQEG 535
             + +       ++   + +     V  G
Sbjct: 829 VDEALRTAGLTSRMLLQVHDEIVLEVAPG 857



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 15/139 (10%)

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYG 594
               A+ + +         +  +H V+  +R + Y++   G   YL   TS   + R   
Sbjct: 746 KPAEAQGLMDTYFERFGGVRDYLHNVVEEARAVGYTETLLGRRRYLPDLTSDNRQRREMA 805

Query: 595 GKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
            ++  N  +Q  + DI+   M    +          ++L VHDEIV E        V  L
Sbjct: 806 ERMALNAPIQGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEAL 865

Query: 648 C-SLMTKNPSWAKGLPLKA 665
               M          PL+A
Sbjct: 866 VREQMAGA------YPLRA 878


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 120/371 (32%), Gaps = 60/371 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L      +   G R+D   +    E + +   K++ +I +L      +   T  L
Sbjct: 503 DLELPLSSELAVMETVGVRVDAAALAAYGEELREAAAKVEREIYELAGTTF-NIGSTKQL 561

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT------L 295
              LF   G+ +V  ++           + +LA    +         + KL +      L
Sbjct: 562 GEILFDKLGLPVVKKTKTG--YSTDADVLEELAPYHPIVEKILHYRQLTKLQSTYIEGLL 619

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            E     G++  T      + TGR S      QN+P +                      
Sbjct: 620 KEIRPQTGKIH-TYYQQTIAATGRLSSQFPNLQNIPIR---------------------- 656

Query: 356 PLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   + S  G  ++ AD + IE RVLA ++G++   +AF  G DI+  T  
Sbjct: 657 --LEEGRKIRKAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAM 714

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             F    D+V    R   K +   + Y     G A+            ++Q+        
Sbjct: 715 DVFGVSEDRVDARMRRQAKAVNFGIIYGISDFGLAQNLNISRKEAAEFIRQYFAVFSGVK 774

Query: 471 TFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKA 509
            + +    ++                         ++      A+   + GTA +++K A
Sbjct: 775 AYRERIVEQARRDGYVTTLLGRRRYLPDINASNYNLRSFAERTAMNTPIQGTAADIIKTA 834

Query: 510 WRAKHQGVLQL 520
                + +  +
Sbjct: 835 MVRLTRRMRDV 845


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/579 (14%), Positives = 180/579 (31%), Gaps = 106/579 (18%)

Query: 21  VWAYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
           V+A  +        L  +A   +    +   + +   +  L +L++E        ++++ 
Sbjct: 312 VYANVDNESYYDAVLYGFAVSLKDQTEYIELQDALADTRFLAWLKEENGK-----AVYDA 366

Query: 78  ILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             F   L  + I         ++A                       K+ E         
Sbjct: 367 KNFYHALHKNGIEFADVKFDVMIAAFL-----------VDGTLSDYDKLAEKYQFDRSLL 415

Query: 137 KGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----GERDLWLL 190
           K  +            +    + +      +D+ +  +   + + + +     E  L  +
Sbjct: 416 KDDVFGKKGKGKLVDLDEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTIEMPLTHV 475

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G    L  + ++    + +   L   I ++      +      L   L+   G
Sbjct: 476 LYAMEKEGVVTSLSTLDEIARATSDKIDTLSAQIYEMAGMEF-NINSPKQLAQILYDELG 534

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRL 305
           +      +   K   +   + +LAK   +  L        K+ +     LS+ V  DG++
Sbjct: 535 L------KAGKKRSTAADVLEKLAKQHPIIPLLLEHRKYQKIYSTYAVGLSKHVLKDGKI 588

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                    ++TGR S      QN+                                 +R
Sbjct: 589 HTIFNQI-QTQTGRLSSSEPNLQNIS------------------------VRDEEGKEIR 623

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +AS G  L+ AD + IE R+LA +A E+  I AF +G DI+  T  + F+   D V 
Sbjct: 624 KAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVD 683

Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474
              R   K +   + Y     G ++            + ++  +  +  +F D       
Sbjct: 684 ANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHAFIDKYFASYPNIKSFMDSTIQFCE 743

Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW---------- 510
                          ++    +  M++     A+   + G+A +L+K A           
Sbjct: 744 ENGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIFERMRRE 803

Query: 511 --------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                   +   + +  +W+D  E    +V+EG   + +
Sbjct: 804 QVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAMK 842


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 170/500 (34%), Gaps = 69/500 (13%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             + S +++ L    +     N+  E I+    LG+ I +  +    V    +   +  +
Sbjct: 377 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 435

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRANHVQAWQLFGEYCKRDVE 168
            A LA  F+  L    E      +F     +     +   +A+ +            D  
Sbjct: 436 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSD-H 494

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              EL++++      E  L  +  ++   G ++D   + KL +   Q   +L++ I +  
Sbjct: 495 QQAELYRQI------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEA 548

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L   LF    I  +  ++       + + + +LA+      L      
Sbjct: 549 GQEF-NINSPKQLADLLFAHMKIPPIKKTK--TGYSTAANVLEELAEKYPFVGLILQYRQ 605

Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           + KLN+     L E V+ D     T      ++TGR S      QN+P +          
Sbjct: 606 LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDR---------- 655

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G ++  +D + IE RVLA + G++   KAF
Sbjct: 656 --------------DEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAF 701

Query: 403 ANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
            +GEDI+  T    F    D+ ++ +QR   K +   + Y     G A+   T       
Sbjct: 702 ESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKE 761

Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496
            +Q +         + D   A +H                     +  ++      A   
Sbjct: 762 IIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTATNT 821

Query: 497 KLIGTACELVKKAWRAKHQG 516
            + G+A +++K A     Q 
Sbjct: 822 PIQGSAADIIKIAMIKMQQA 841



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGK 596
           I  + +         + K  +  ++  + +  Y + +     YL    S+    R++  +
Sbjct: 757 IEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAER 816

Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
              N  +Q  + DI+   M    +          ++L VHDE++ E P      +  L 
Sbjct: 817 TATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELV 875


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/522 (15%), Positives = 172/522 (32%), Gaps = 95/522 (18%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++L   L DE +     +     +   + LGI +  + +    +LA       + +N   
Sbjct: 365 TNLRHLLEDEQIKKNVFDLKRTMVGLHR-LGIHVHGQDY--DMLLASYL---INNENNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L    HL      K  I  + KG  +  P D          +LF     + V A   L 
Sbjct: 419 DLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDE--------ELFNHLASK-VNAIENLK 469

Query: 175 KRLIP-LSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + L+  L + E+             +   +   G +++   +L+LQ   A   K+L++ I
Sbjct: 470 QPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKI 529

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILN 280
            +       +      L   LF    + ++  ++     +++ +      + +  +++  
Sbjct: 530 YQQAGERF-NLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDY 588

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           R  +   +   +  L + +  DGR+         + TGR S      QN+P +       
Sbjct: 589 RQIAKIQST-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 640

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  +R   +    +G      D + +E RVLA ++G+   
Sbjct: 641 ------------------EEGKQIRKAFVPTEPDGYIF-SCDYSQVELRVLAHVSGDQNM 681

Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            +AF  G DI+  T  + F+    D+V+   R   K +   + Y     G +K       
Sbjct: 682 QEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEF 492
                +  + +       + D     +                         ++      
Sbjct: 742 RAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERT 801

Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           A+   + G+A +++K A             K + V+Q+  +L
Sbjct: 802 AINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593
           IS +R          ++   +  +   + ++R   Y++       YL    ++    R++
Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
             +   N  +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  
Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857

Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673
           +   +M         +PL A+ G+    Y
Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 146/414 (35%), Gaps = 74/414 (17%)

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              ++A          L+D E  +  +   +   G  +DL L+ +LQ   A + +   E 
Sbjct: 481 AEALDAELARIDSTALLADMELPVQRVLADMERAGIAVDLRLLAELQSQFADQIRDAAEA 540

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQL 273
              +    I +      L++ LF   G+     ++                  H  +  L
Sbjct: 541 AYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAVQGLFEKTGHPFLQHL 599

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                + RL  +      ++ L  +V++DGR+  T     A+ TGR S      QN+P +
Sbjct: 600 LAHRDVTRLKVT------VDGLLNSVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIR 652

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392
                                     A   +R   +   G  +L+ AD + IE R++A +
Sbjct: 653 T------------------------DAGRQIRDAFVVGAGYSELMTADYSQIEMRIMAHL 688

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448
           +G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L Y     G +   
Sbjct: 689 SGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSTQL 748

Query: 449 KTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQD 487
           K       + + Q+         +                         + +S +  +++
Sbjct: 749 KISTEEAKVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVRE 808

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535
                A+   + G+A +++K A     + +       ++   + +     +  G
Sbjct: 809 AAERAALNAPIQGSAADIIKVAMIEVDKALTEAGLASRMLLQVHDELLFEIAPG 862


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/569 (17%), Positives = 181/569 (31%), Gaps = 92/569 (16%)

Query: 16  LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAH 71
           L  VG   AY   A       A  D   +  D    +  P D   L  +L D       H
Sbjct: 343 LAVVGTHLAYDADATALAIVSA--DGEGRYID--TSALQPDDEAALASWLADPGPPKALH 398

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
            +    +      G           + LA     P     +   L+      ++    A 
Sbjct: 399 EAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAE 455

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---LSDGERDLW 188
             +      +    D T    VQ   L         +A  E   R+     L   E  + 
Sbjct: 456 QQQLSLLDDN----DGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELPVQ 511

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G  +DL+L+ +LQ   A + +   E    +    I +      L+  LF  
Sbjct: 512 RVLAGMEHTGIAVDLELLGELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQTVLFDE 570

Query: 249 TGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
             +     ++                  H  +  L     + RL  +      ++ L  +
Sbjct: 571 LEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVT------VDGLLAS 624

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V+SDGR+  T     A+ TGR S      QN+P +  +                      
Sbjct: 625 VASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA---------------------- 661

Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +  +G  +L+ AD + IE R++A ++ ++  I+AF  GED++    ++AF
Sbjct: 662 --GRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAF 719

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF- 472
             PI +V+ E R   K M   L Y     G ++  K         +  +         + 
Sbjct: 720 GVPIGEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYFARFGGVRDYL 779

Query: 473 --------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                   + +S +  +++     A+   + G+A +++K A   
Sbjct: 780 MNIVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIE 839

Query: 513 KHQGVL------QLWKDLTEGFACVVQEG 535
             + +       ++   + +     V  G
Sbjct: 840 VDKAIKEAGLKSRMLLQVHDELLFEVAPG 868


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/487 (18%), Positives = 157/487 (32%), Gaps = 69/487 (14%)

Query: 3   KLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +L +D+   S +P+     GV    E  QAV     + +   P +L      S + + + 
Sbjct: 67  RLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLGAPAQL----SMSDIDAVMG 122

Query: 59  QYLRDETVMCVAHNSLF-ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             L D  +  V H+  F E IL +  +G+          ++LA     P         L 
Sbjct: 123 PLLADPELPKVGHDVKFCEVILLRHRIGLV----GVSFDTMLASYLLDPEGKNQLHE-LA 177

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             E   KM+                      RA           Y     +    L  RL
Sbjct: 178 ERELGAKMQT--------LDEVAPKRRGQAQRALDEIELGEASSYGAAFADVALSLTDRL 229

Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            P          L   E  L  +   +   G  +D   + +L   +  E   L++   ++
Sbjct: 230 RPRLRVEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 289

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
               I  +     L   LF    +     ++           +  L+++     +     
Sbjct: 290 VGHDINLA-SPKQLEAVLFDELKLRSQRKTK--TGRSTDADVLEALSEEHPFPGVVLEHR 346

Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           AI KL     + L   V+   GR+         + TGR S      QN+P +        
Sbjct: 347 AIAKLKGTYVDALPRLVNPGTGRIHTRWG-QAVAATGRLSSQDPNLQNIPIRT------- 398

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A  G  +V AD + IE RVLA ++ +   + A
Sbjct: 399 -----------------ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDA 441

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G+D++V T  + F      V+ E R   K +   + Y  G      +A    +   +
Sbjct: 442 FRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESA---LAKRLDISRAE 498

Query: 462 FSQNVKS 468
            ++ + +
Sbjct: 499 AARFIDA 505


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 144/423 (34%), Gaps = 78/423 (18%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D E +R+  +    +++ E  L  +   +   G   D   + +L+   A E K   +   
Sbjct: 482 DAELSRDGEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAY 541

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILS---HSNITQLAK 275
           +       +      L+  LF   G+      +         L+ +     H  +  L +
Sbjct: 542 EAVGREF-NLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHLLR 600

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              + +L ++      ++ L ++VS DGR+  T     A+ TGR S      QN+P +  
Sbjct: 601 HRDVAKLKTT------VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT- 652

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAG 394
                                       +R   +   G + L+ AD + IE R++A ++ 
Sbjct: 653 -----------------------EEGRRIRRAFVVGTGYECLLTADYSQIEMRIMAHLSA 689

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           ++  I AF +G D +  T +  F  P++ V+ +QR   K M   L Y     G ++    
Sbjct: 690 DEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAYGLSAFGLSQQLGV 749

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489
            A      ++ +         +     A +                      +   ++  
Sbjct: 750 TAEEARGLMETYFAGFGGVRDYLQEVVARARRDGYTESVLGRRRYLPDLVSDNRQRREMA 809

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSIS 539
              A+   + G+A +++K A       V          LQ+  +L    A   +E     
Sbjct: 810 ERMALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAPGEREALEAL 869

Query: 540 ARR 542
            RR
Sbjct: 870 VRR 872



 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 537 SISARRVANVPRLVMRRHKRDVH-IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
           +  AR +           +  +  +V  + R      V G   YL    S   + R    
Sbjct: 751 AEEARGLMETYFAGFGGVRDYLQEVVARARRDGYTESVLGRRRYLPDLVSDNRQRREMAE 810

Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           ++  N  +Q  + DI+   M N        G    ++L VHDE+V E       ++  L 
Sbjct: 811 RMALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAPGEREALEALV 870

Query: 649 SL-MT 652
              M 
Sbjct: 871 RREMG 875


>gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
          Length = 885

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/494 (15%), Positives = 156/494 (31%), Gaps = 74/494 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110
             L   L D+ V     +     +   +   + I +       +LA          + L 
Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNENNSNDLG 420

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             C   N+ +           +  + KG   + P +    NH+    L  E  K  +   
Sbjct: 421 EICQLYNYYDLQPD-------VDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTLLKR 473

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               ++       E  +  +   +   G + D   +++L     Q   +L+ DI  L  G
Sbjct: 474 LTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAG 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSG 286
              +      L   LF    +  +  ++     +++ +    + + + + ++  R  +  
Sbjct: 533 ERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKI 592

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
            +   +  L + +  DGR+    Q    + TGR S      QN+P               
Sbjct: 593 QST-YVKGLLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP--------------- 635

Query: 347 LNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                            +R   I S  +G      D + +E RVLA ++G++   +AF  
Sbjct: 636 ---------VRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKT 685

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+  T  K F+    D+V+   R   K +   + Y     G +K            +
Sbjct: 686 GYDIHAHTAMKIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFI 745

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
             + +       + D E   +                      +  ++      A+   +
Sbjct: 746 DNYFEQYPKIKDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPI 805

Query: 499 IGTACELVKKAWRA 512
            G A +++K A   
Sbjct: 806 QGGAADIIKIAMIN 819


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 139/402 (34%), Gaps = 66/402 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +  +G R+D + ++++     +  K++++ I +L      +      L
Sbjct: 483 EMELPLSDILARMEIQGIRVDQNRLIEMGLQFEERLKEIEQTIYELAGEEF-NINSPKQL 541

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296
            + LF    + ++  ++       +   + +LA    +         + KLN+     L 
Sbjct: 542 GVILFEKMNLPVIKKTK--TGYSTAVDVLEKLASQSPIVECILEYRQLAKLNSTYVEGLQ 599

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +   G++         ++TGR S      QN+P +                       
Sbjct: 600 TYIDEKGKIHTRFV-QNLTQTGRLSSQDPNLQNIPIRT---------------------- 636

Query: 357 LGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  VRS  + S    KL+ +D + IE RVLA +A +   I+AF N  DI+  T  +
Sbjct: 637 --EEGRQVRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMR 694

Query: 416 AFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            F     ++V+   R   K +   + Y     G ++            + ++ +  +   
Sbjct: 695 VFGIQNPEEVTSSMRRQAKAVNFGIVYGISDYGLSQNLNIPRKKAKEFIDRYLEEFQGVK 754

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +   AE+                      +  ++      A+   + GTA +++K A
Sbjct: 755 DYMETIVAEARQNDYVETLFHRRRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADILKVA 814

Query: 510 WRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545
                + +       +L   + +     V E    S + +  
Sbjct: 815 MIELDRELTERNFQAKLLLQVHDELIFEVPEEEVESLQSLVE 856



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
           +Q  + DIL   M    +          ++L VHDE++ E P+    S+ +L   +M   
Sbjct: 803 IQGTAADILKVAMIELDRELTERNFQAKLLLQVHDELIFEVPEEEVESLQSLVEEVMENA 862

Query: 655 PSWAKGLPLKAE 666
            S    +PLKA+
Sbjct: 863 VS--LSVPLKAD 872


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/498 (15%), Positives = 165/498 (33%), Gaps = 68/498 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L Q L D+T+     +     +   +   +DI ++      +LA       + +N    L
Sbjct: 367 LRQMLEDKTIKKNVFDIKRTYVGLHR---LDIKAEGLDYDMLLASYL---VNNENNSNDL 420

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               HL      K  +  + KG   + P D     H+ A     E  K  +    +  ++
Sbjct: 421 GEIAHLYDDYSVKTDLEVYGKGKKQAVPDDNDFFEHLAAKVAVIEKLKTPLLEKLKDHEQ 480

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                  E  +  +   +   G +++  ++ +L    A + ++L+  I +       +  
Sbjct: 481 DDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLN 539

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN--- 293
               L   LF   G+  +  ++    + +    + QL     +         I K+    
Sbjct: 540 SPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQNTY 597

Query: 294 --TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
              L + +  DGR+         + TGR S      QN+P +                  
Sbjct: 598 VKGLLDCIQPDGRIHTRY-LQTLTTTGRLSSVDPNLQNIPTKT----------------- 639

Query: 352 TIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                       +R   + S  +G      D + +E RVLA ++G++   +AF +G DI+
Sbjct: 640 -------EEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIH 691

Query: 410 VTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
             T  K F+    D+V+   R   K +   + Y     G +K            ++ + +
Sbjct: 692 AHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIENYFE 751

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
                  + D    ++                      +  ++      A+   + G+A 
Sbjct: 752 QYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAA 811

Query: 504 ELVKKAWRAKHQGVLQLW 521
           +++K A     + + +L 
Sbjct: 812 DIIKIAMINMQKKLDELH 829



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 866 VK--LDVPLIAD 875


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/508 (16%), Positives = 168/508 (33%), Gaps = 88/508 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L + L D+T+     +     +   +   +++ ++      +LA       + +N    L
Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYL---VNNENNSNDL 420

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               HL      K  +  + KG   + P D            F E+    V    +L   
Sbjct: 421 GEVAHLYDDYSVKTDLEVYGKGKKQAVPDD----------NEFFEHLAAKVAVIEKLKTP 470

Query: 177 LIP-LSDGERD-LWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L+  L D E+D L+         +   +   G +++  ++ +L    A + ++L+  I +
Sbjct: 471 LLEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQ 530

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   LF   G+  +  ++    + +    + QL     +       
Sbjct: 531 QAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDY 587

Query: 287 SAILKLN-----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             I K+       L E +  DGR+         + TGR S      QN+P +        
Sbjct: 588 RQIAKIQNTYVKGLLECIQPDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT------- 639

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                 +R   + S  +G      D + +E RVLA ++G++   
Sbjct: 640 -----------------NEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQ 681

Query: 400 KAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           +AF +G DI+  T  K F+    D+V+   R   K +   + Y     G +K        
Sbjct: 682 EAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQ 741

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               ++ + +       + D                          S +  ++      A
Sbjct: 742 AKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTA 801

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLW 521
           +   + G+A +++K A     + + +L 
Sbjct: 802 INSPIQGSAADIIKIAMINMQKKLDELH 829



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 866 VK--LDVPLIAD 875


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 147/443 (33%), Gaps = 76/443 (17%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D E       RL  L D E  L  +   +   G  +D+D ++ L   +A   K  ++   
Sbjct: 495 DAEVAARGGARL--LRDVELPLIDVLAAMERAGIAVDVDTLVDLSAELAAHVKATEQAAY 552

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILS---HSNITQLAK 275
           ++      +      L+  LF    +      +         L+++L+   H  +  L +
Sbjct: 553 QVVGREF-NLGSPKQLQQILFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLR 611

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              ++RL ++      +++L   V ++GR+  T     A+ TGR S      QN+P +  
Sbjct: 612 HRDVSRLKAT------VDSLIPMVDAEGRIHTTFNQMVAA-TGRLSSQDPNLQNIPIRT- 663

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAG 394
                                       +R   +   G + L+ AD + IE R++A ++ 
Sbjct: 664 -----------------------AEGRRIRQAFVVGKGYEALLTADYSQIEMRIMAHLSQ 700

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           +   I+AF +G D +  T A  F    ++V  E R   K M   L Y     G ++    
Sbjct: 701 DQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAYGLSAYGLSQQLGI 760

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489
                 + ++++ +       +       +                      +   ++  
Sbjct: 761 TPDEARVLMEEYFRRFGGVRDYLRTVVERARRDGYTETLLGRRRYLPDLTSDNRQRREMA 820

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRV 543
              A+   + G+A +++K A     + +       +L   + +     V  G       +
Sbjct: 821 ERMALNAPIQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERADVEEI 880

Query: 544 ANVPRLVMRRHKRDVHIVLPSSR 566
                         + + +   R
Sbjct: 881 VRREMGHAYELSVPLEVSVGVGR 903


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 145/423 (34%), Gaps = 78/423 (18%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D E +R+  +    ++  E  L  +  ++   G   D   + +L+   A E K   +   
Sbjct: 482 DAELSRDGEQSSRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAY 541

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNITQLAK 275
           +       +      L+  LF+  G+      +            L +   H  +  L +
Sbjct: 542 EAVGREF-NLGSPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLR 600

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              + +L ++      ++ L ++VS DGR+  T     A+ TGR S      QN+P +  
Sbjct: 601 HRDVAKLKTT------VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT- 652

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAG 394
                                       +R   +   G + L+ AD + IE R++A ++ 
Sbjct: 653 -----------------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSA 689

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           +D  I AF +G D +  T +  F  P+++V+ +QR   K M   L Y     G ++    
Sbjct: 690 DDVLIDAFNSGRDFHAATASSVFQVPVEEVTTDQRRKIKAMNYGLAYGLSAFGLSQQLGV 749

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQY 489
            A      ++ +         +     A + H                        ++  
Sbjct: 750 TAEEARGLMEIYFAGFGGVRDYLQEVVARARHDGYTETVLGRRRYLPDLVSDNRQRREMA 809

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSIS 539
              A+   + G+A +++K A       V          LQ+  +L    A   +E     
Sbjct: 810 ERMALNAPIQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQVHDELVFEVAPGERERLEEL 869

Query: 540 ARR 542
            RR
Sbjct: 870 VRR 872


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 127/388 (32%), Gaps = 64/388 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T  + +      + E  L  +   +   G+ ++ + ++   + + +   ++ ++I  L  
Sbjct: 562 TIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERITRITQEIYDLAG 621

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNR 281
               +      L   LF   G+  +  ++    T   +L      H  + ++    +L +
Sbjct: 622 TSF-NLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAK 680

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           L S+      +  L + +    GR+         + TGR S      QN+P +      L
Sbjct: 681 LQSTY-----VEGLLKVIRKETGRVHTRF-HQTLTATGRLSSSEPNLQNIPIRLEEGRRL 734

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
            +  +                              +  AD + IE R+LA ++G++  I 
Sbjct: 735 RRVFEPTY-----------------------KDWVIFAADYSQIELRILAHLSGDEALID 771

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF    DI+  T A  F  P ++V+   R   K +   + Y     G A+          
Sbjct: 772 AFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEAK 831

Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495
             ++ + +       + D                          S +  ++      A+ 
Sbjct: 832 RFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAMN 891

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKD 523
             + G+A +L+K A     + +     D
Sbjct: 892 TPIQGSAADLIKLAMVRIDRAMRDAQMD 919



 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A+R            KR +  ++  +R   Y     +   YL    S+  + R++  + 
Sbjct: 829 EAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERT 888

Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             N  +Q  + D++   M    +          ++L VHDE++ E P+    ++  L  
Sbjct: 889 AMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPNDELAALEVLVR 947


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/540 (16%), Positives = 166/540 (30%), Gaps = 68/540 (12%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D T+            + D     V HN+     + +         +     + LA    
Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P     A  AL       ++    A   +   G+ D    D   A       L   +  
Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTT 489

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           R  E           L D E    +L   +   G   D   +  +++  A   ++  ++ 
Sbjct: 490 RLKEVGAAEL-----LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKEA 544

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +      L+  LF   G+     ++    +            +  L  L  
Sbjct: 545 HAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLML 603

Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                 KL      L + +++DGR+  T     A+ TGR S      QN+P +       
Sbjct: 604 RHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------ 656

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G + L+ AD + IE RV+A ++ +   I
Sbjct: 657 ------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLI 698

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +GED++ T  ++ F    D V  E R   K M   L Y     G ++      +  
Sbjct: 699 EAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEA 758

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
            + +  + +       +      E+                      +   ++     A+
Sbjct: 759 RVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMAL 818

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ---LWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
              + GTA ++VK A     + + +     + L +    +V E      ++V  + R  M
Sbjct: 819 NAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERQQVEEILRHEM 878



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 26/268 (9%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  A    I+         T   +   P  +    +   G+ +        G +  
Sbjct: 616 EGLIKTIAADGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G   + V  
Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVEKDAVDA 725

Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +   L   L+              AR + +         +  +H V+  +R 
Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARA 785

Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620
             Y++ + G   YL    S   + R    ++  N  +Q  + DI+   M    K      
Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLRVDKALTEAK 845

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTL 647
               ++L VHDEIV E        V  +
Sbjct: 846 LTSRMLLQVHDEIVLEIAKGERQQVEEI 873


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/509 (16%), Positives = 163/509 (32%), Gaps = 69/509 (13%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
            D  E+     ++   L DE +     +     ++    LGI      +    +LA    
Sbjct: 359 VDLLEE----DNIKHILEDEKIKKNVFDLK-RSMVGAHRLGIHTHGLDY--DMLLASYL- 410

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYC 163
              + +N    L    HL      K  +  + KG  +  P D     NH+ +     E  
Sbjct: 411 --VNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESL 468

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           K+ +    +  ++       E     +   +   G +++   +++LQ   A + KKL++ 
Sbjct: 469 KKTLLEKLKDHEQDALFDTIEIPTARVLARMEMNGMKVETSTLIQLQNEFAVKLKKLEDK 528

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I         +      L   LF   G+ ++  ++    T   +L            IL+
Sbjct: 529 IYGQAGEKF-NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILD 587

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               +      +  L + +  DGR+         + TGR S      QN+P +       
Sbjct: 588 YRQIAKIQSTYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 640

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  +R   +    +G      D + +E RVLA ++G+   
Sbjct: 641 ------------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNM 681

Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            +AF  G DI+  T  K F+    D+V+   R   K +   + Y     G +K       
Sbjct: 682 QEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEF 492
                +  + +       + +    E+                         ++      
Sbjct: 742 RAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERT 801

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A+   + G+A +++K A     + + +L 
Sbjct: 802 AINSPIQGSAADIIKIAMINMQKKLDELH 830



 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +   +M   
Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSA 866

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 867 VK--LDVPLIADSGWGHNWY 884


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/494 (17%), Positives = 168/494 (34%), Gaps = 69/494 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +++ L    +     N+  E I+    LG+ I +  +    V    +   +  + A LA 
Sbjct: 391 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLAN 449

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            F+  L    E      +F     +     +   +A+ +            D     EL+
Sbjct: 450 RFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSD-HQQAELY 508

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +++      E  L  +  ++   G ++D   + KL +   Q   +L++ I +       +
Sbjct: 509 RQI------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEF-N 561

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                 L   LF    I  +  ++       + + + +LA+      L      + KLN+
Sbjct: 562 INSPKQLADLLFAHMKIPPIKKTK--TGYSTAANVLEELAEKYPFVGLILQYRQLAKLNS 619

Query: 295 -----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L E V+ D     T      ++TGR S      QN+P +                
Sbjct: 620 TYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDR---------------- 663

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   + S  G ++  +D + IE RVLA + G++   KAF +GEDI
Sbjct: 664 --------DEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGEDI 715

Query: 409 YVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T    F    D+ ++ +QR   K +   + Y     G A+   T        +Q + 
Sbjct: 716 HAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKEIIQTYF 775

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   + D   A +H                     +  ++      A    + G+A
Sbjct: 776 HEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTATNTPIQGSA 835

Query: 503 CELVKKAWRAKHQG 516
            +++K A     Q 
Sbjct: 836 ADIIKIAMIKMQQA 849



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGK 596
           I  + +         + K  +  ++  + +  Y + +     YL    S+    R++  +
Sbjct: 765 IEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAER 824

Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
              N  +Q  + DI+   M    +          ++L VHDE++ E P      +  L 
Sbjct: 825 TATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELV 883


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 179/562 (31%), Gaps = 103/562 (18%)

Query: 2   SKLFIDI--ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLL 58
            KL  DI  ET         GV   ++ A I   +++++DE              P  + 
Sbjct: 306 EKLLADITPETIVAFDTETTGVD--SKSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQI- 362

Query: 59  QYLRDETVMCVA-----------HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
               D      A            N  ++  + K  LG++ P   +  T +LA  +   S
Sbjct: 363 ----DLKFATWAVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNS 417

Query: 108 SLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTR--ANHVQAWQLFGEYCK 164
           S+    LA   +     K E+       F    +++            ++ ++ F     
Sbjct: 418 SVGMDALAKRLYDYDTIKFEDVVKKGQTFGDVPLENAAKYAAEDAWITLKFYKTFQNTLD 477

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            ++ A  ++          E    L    +   G +I+   + KL      + K L  +I
Sbjct: 478 PNLLALADMH---------EFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEI 528

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSIL-SHSNITQLAKD 276
            +L+     +      L + LF    +             E  L  ++ +H  + ++   
Sbjct: 529 YELSGENF-NINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAY 587

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L +L S+         L      D   R+  +    G + TGR S      QN+P + 
Sbjct: 588 RELYKLQSTYC-----EPLLALAKKDEGSRIYTSFLQTG-TSTGRLSSKNPNLQNIPAR- 640

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                  G  +  VR C  A  G   V  D + IE R+LA  + 
Sbjct: 641 -----------------------GSLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSR 677

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           +   ++AF N EDI+  T    F +       + RA+ K +   L Y  G    A     
Sbjct: 678 DPALLEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIYGMGSSKLANQVNI 733

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YP 490
             +     ++++ +   +   F +  +  + +                          + 
Sbjct: 734 TRAEAKEYIERYFKAFATIKEFLESIKISAKNEGFVQTLLGRKRYFDFKSATPMQMAMFE 793

Query: 491 EFAVKDKLIGTACELVKKAWRA 512
             AV     G+A +LVK A   
Sbjct: 794 REAVNTVFQGSAADLVKMAMVK 815



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631
           G   Y +  ++  M+   +  +    + Q  + D++   M            ++L +HDE
Sbjct: 774 GRKRYFDFKSATPMQMAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKNASMLLQIHDE 833

Query: 632 IVSETPDT 639
           ++ E  D 
Sbjct: 834 LIFEVKDE 841


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/656 (17%), Positives = 207/656 (31%), Gaps = 149/656 (22%)

Query: 49  EQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTS 97
           E S +P       L  +L          N+ ++R++  +       + +D     ++  +
Sbjct: 433 EGSQLPLEVVLEQLAPWLSSPKHPKALQNAKYDRLILLRHGLLLGGVVMDTLLADYLRDA 492

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
               +  + +          FS+ + K ++GKA    F +  ID                
Sbjct: 493 AAKHSLDVMAERDYGITPTVFSDLVGKPKDGKASC--FAEVPIDQAA------------- 537

Query: 158 LFGEYCKRDVEATRELFKRLIP------------LSDGERDLWLLDQTINDRGYRIDLDL 205
               YC  DV  TR+L   L              L   E  L  +   +   G RIDL  
Sbjct: 538 ---LYCAMDVHLTRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTY 594

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           +  L + + +   +L+ +  +        +     L   LF   G+D             
Sbjct: 595 LDTLSKEMGETLTRLEANAKQAAGVDFNLA-SPKQLGELLFETLGLDRKKSRRTKTGYST 653

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGR 319
             + + +LA D  +  L      + KL     + L + V +  GR+         + TGR
Sbjct: 654 DATVLDKLADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGR 712

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P +                           S  +R   +      L+ A
Sbjct: 713 LSSSNPNLQNIPIRT------------------------EYSRRIRKAFLPQEHWTLLSA 748

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R+L  ++GE+   +A+ +G+D++  T     +   D+++ ++R +GK +   +
Sbjct: 749 DYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DEITADERRLGKTINFGV 806

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y  GA+ F   A   G+   +  + +                                 
Sbjct: 807 IYGMGAQRF---ARETGVSQAEAKEFLSK------------------------------- 832

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                     +R ++  V     +L E  A       +I  RR            +    
Sbjct: 833 ----------YRERYPKVFAFL-ELQERLALSRGYVETILGRR------------RPFHF 869

Query: 560 IVLPSSRRLVYS--DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                 R L     ++  D +      +Q +R            +Q  S DI+   M   
Sbjct: 870 DRNGLGRLLGKDPFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQL 923

Query: 618 TKNG------YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666
                       ++L VHDE+V E   +    V  L  S M         +PL AE
Sbjct: 924 QAALQQQSLPARLLLQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVAE 977


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 143/416 (34%), Gaps = 67/416 (16%)

Query: 169 ATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           A  E+  +  L  L + E  L  +   +  +G +ID     K ++ +      L + I +
Sbjct: 492 AMEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLNNLQKKIFE 551

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280
           +      +      L   LF    +D V  ++  L        + +L  D       IL 
Sbjct: 552 IAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGL--STDEEVLEKLKNDGVEIASYILE 608

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               +      ++ L +   S  RL  T    G + TGR S      QN+P         
Sbjct: 609 YRKYAKLKNTYVDALPKLADSRDRLHTTFNQIGTT-TGRLSSSNPNLQNIP--------- 658

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA NG  L+  D + IE RVLA ++ ++  I 
Sbjct: 659 ---------------VKTDEGMKIRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIA 703

Query: 401 AFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           A+ N ED++  T  K F     ++VS+EQR I K +  ++ Y     G +K         
Sbjct: 704 AYKNNEDLHRVTAKKIFELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQKEA 763

Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494
              + ++ +       FE                       E   S +  +++Q    AV
Sbjct: 764 TDYINRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGRRRIIEGILSKNKNIKNQAERMAV 823

Query: 495 KDKLIGTACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
              + GTA E++KK         +++  + L   + +     ++E      R    
Sbjct: 824 NSVIQGTAAEILKKVMIEIFKVIENKEDISLLLQVHDELIFEIKEEKVEEYRTTIE 879


>gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118]
          Length = 886

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/514 (15%), Positives = 170/514 (33%), Gaps = 79/514 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            ++   L DE +     +    R +     LGI      +    +LA       + +N  
Sbjct: 364 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 416

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172
             L    HL      K  +  + KG  +  P D     NH+ +     E  KR++    +
Sbjct: 417 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKRELLKKLK 476

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++       E     +   +   G +++   +++LQ   A + K+L++ I        
Sbjct: 477 EHEQDALFDTIEIPTACVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKF 536

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      L   LF   G+ ++  ++     +++ +      + +  +++  R  +   +
Sbjct: 537 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQS 595

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              +  L + +  DGR+         + TGR S      QN+P +               
Sbjct: 596 T-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------------- 639

Query: 349 RGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                          +R   +    +G      D + +E RVLA ++G+    +AF  G 
Sbjct: 640 ----------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGY 688

Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           DI+  T  K F+    D+V+   R   K +   + Y     G +K            +  
Sbjct: 689 DIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDN 748

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           + +       + D    E+                         ++      A+   + G
Sbjct: 749 YFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQG 808

Query: 501 TACELVKKAWRA----------KHQGVLQLWKDL 524
           +A +++K A             K + V+Q+  +L
Sbjct: 809 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 842



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 866 VK--LDVPLIADSGWGHNWY 883


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/506 (13%), Positives = 167/506 (33%), Gaps = 82/506 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            D   + +D+       ++    +  K+    ++         +LA              
Sbjct: 364 DDFKNWAKDKEAQKQVFDAKRTYVALKRQ---NVDIASIDFDILLASYL----------- 409

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN  ++   + E       +   S +S      +    +   +  ++  R ++A R L 
Sbjct: 410 -LNTKDNSKDLSEVATEHEYYEVSSDESVYGKGAKIAIPEEKTIIYDHIARKIKAIRILS 468

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           K+L             ++ E  L ++   +   G +++   +++++E  A     +++ +
Sbjct: 469 KQLGENLEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKRLMEMKEEFAIRLTDIEQRV 528

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +L      +      L + LF   G  ++  ++    T   +L          + IL+ 
Sbjct: 529 YELAGEKF-NLNSPKQLGVILFEKMGYPVIKKTKTGYSTAVDVLEQLREQAPIVEHILDY 587

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +      +  L + +    G++         ++TGR S      QN+P +       
Sbjct: 588 RQIAKIQSTYIEGLLKVIDKKTGKIHTRY-MQTIAQTGRLSSVDPNLQNIPIR------- 639

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   + S  G ++  +D + IE RVL  ++ +    
Sbjct: 640 -----------------LEEGRKIRQAFVPSHEGWEIFASDYSQIELRVLGHVSDDKLLK 682

Query: 400 KAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           +AF  G+DI+ +T  + F     ++VS E R   K +   + Y     G ++        
Sbjct: 683 EAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKE 742

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               +  + +      T+ +                       +  S +  ++      A
Sbjct: 743 AQHFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFQRRRYLPEINSRNFNLRSFAERTA 802

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQ 519
           +   + G+A +++K A     Q + +
Sbjct: 803 INTPIQGSAADIIKIAMIKMDQKLKE 828


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/562 (15%), Positives = 167/562 (29%), Gaps = 87/562 (15%)

Query: 34  AYAWDDEPVKLWDRTEQSAM-----PSDLLQY--------LRDETVMCVAHNSLFERILF 80
           A+A     V        +       P++L +         L D     V H++     +F
Sbjct: 354 AWALGTGSVAEVALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVF 413

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            +        +     + LA     P        AL+      ++        +   G+ 
Sbjct: 414 AEHGW---SIEGVTMDTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAVADGQLAFGAD 470

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           +    +           L   +  R  E       R     D E     L   +   G  
Sbjct: 471 EGAEAEALMVQARAILDLGEAFGSRLEEVGAADLLR-----DMELPTSALLARMERHGIA 525

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
            D   +  ++++ A   ++  ++          +      L+  LF    +     ++  
Sbjct: 526 ADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKRTKTG 584

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASR 316
             +            D  L  +        KL      L + +++DGR+  T     A+ 
Sbjct: 585 YTTDADALAWLATQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA- 643

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P +                              +R   +   G + 
Sbjct: 644 TGRLSSTDPNLQNIPVRT------------------------DEGRAIRRGFVVGEGFES 679

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE RV+A ++ ++  I+AF +GED++ T  A+ F      V  E R   K M
Sbjct: 680 LLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAM 739

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------- 481
              L Y     G ++     A+     +  + +       +      E+           
Sbjct: 740 SYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATLFG 799

Query: 482 -----------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQL 520
                      +   ++     A+   + GTA ++VK A               + +LQ+
Sbjct: 800 RRRYLPDLSSDNRQRREAAERMALNAPIQGTAADIVKIAMLKVDGALRETDLASRMLLQV 859

Query: 521 WKDLTEGFACVVQEGGSISARR 542
             ++    A   +       RR
Sbjct: 860 HDEIVLEVAPGERPAVEELVRR 881


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/502 (13%), Positives = 160/502 (31%), Gaps = 72/502 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVL-ARTNGLPSSLK 110
             +   L   TV     ++       +  +G+    I  +      +L +      ++  
Sbjct: 362 KQVKAILESSTVQKNVFDAK------RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +             ++  + +  +  K  ID  P      +H+       +    D+   
Sbjct: 416 DVGTVAKL-HGFANIKTDEEVYGKGAKKKID--PEAPEFFDHIVHKAKAIDQLHNDMFKA 472

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +   +     D E  +  +   +   G +++ + + ++     +   ++++ I +    
Sbjct: 473 LDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAGE 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF    + ++  ++    + +    + +LA D  + +   +   I 
Sbjct: 533 EF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLNYRQIS 589

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L + +  +     T      ++TGR S      QN+P +            
Sbjct: 590 KLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS----------- 638

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S    ++  +D + IE RVLA I G+    +AF  
Sbjct: 639 -------------EEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           GEDI+ TT  + F     D V+ E R   K +   + Y     G A             +
Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQFI 745

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           Q++ +       + +                          S +  ++      A+   +
Sbjct: 746 QRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNTPI 805

Query: 499 IGTACELVKKAWRAKHQGVLQL 520
            G+A +++K A     + +  L
Sbjct: 806 QGSAADIIKIAMINMDEALKPL 827


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 126/373 (33%), Gaps = 68/373 (18%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L      E  +      + + G   D D++ K+ + +  E  ++ E I       I +  
Sbjct: 391 LEVYLGMELPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTFVGYDI-NLN 449

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKS------------ILSHSNITQLAKDLILNRLAS 284
               L+++LF   G++ +  ++    +             L    +  +     L +L S
Sbjct: 450 SPKQLQVFLFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLS 509

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + +       L + V +DGR+  + +  G + TGR S      QN+P +           
Sbjct: 510 TYAL-----PLKDYVLADGRIHSSFRQTG-TATGRLSSVNPNMQNIPMK----------- 552

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                        G     +R   I   G   V  D + IE R+LA + G++   +A+ N
Sbjct: 553 -------------GKWGVKLREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRN 599

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
            EDI+  T +  F    +KV    R + K +   + Y     G ++            ++
Sbjct: 600 NEDIHTKTASGIFGVAPEKVDSGMRRLAKAVNFGILYGLSPFGLSRDTGVSQKEAKKFIE 659

Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499
           ++         F +                       +  S +  +  +    A    + 
Sbjct: 660 KYFATYPKVKGFIEKIAKETKEKGYAETLAGRKRFIREIRSKNRTVAMRGERIATNVPMQ 719

Query: 500 GTACELVKKAWRA 512
           G+A +++K A   
Sbjct: 720 GSAADIIKLAMVE 732



 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 539 SARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
            A++          + K  +  I   +  +     + G   ++    S+       G ++
Sbjct: 653 EAKKFIEKYFATYPKVKGFIEKIAKETKEKGYAETLAGRKRFIREIRSKNRTVAMRGERI 712

Query: 598 TENI-VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSV-GTLCS 649
             N+ +Q  + DI+   M           YD  +VL VHDE+V E  D         + S
Sbjct: 713 ATNVPMQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRS 772

Query: 650 LM 651
           +M
Sbjct: 773 IM 774


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 138/395 (34%), Gaps = 66/395 (16%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  +  +   +   G  + L  +L+ ++ I ++   L+ +I +              + 
Sbjct: 432 VEIPVARIIVGMEKAGIPVSLTRILEAKKTIEEKIAGLEAEIYREAGQTFSIL-SPKQVG 490

Query: 243 MYLFLITGIDLVDMS-EGTLKSILSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296
             L+   G+     + +G+         +  LA    L +L  S   + K     L  + 
Sbjct: 491 EVLYGRLGLPPPRRTGKGSGAPSTDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLPME 550

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           E   SDGRL G      A+ TGR S      QN+P +                       
Sbjct: 551 EGRGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIPART---------------------- 587

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  VR C +A  G  L+ AD + IE R+LA  +G+ +  +AF+ GEDI+  T A  
Sbjct: 588 --ELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALL 645

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F  P   V+ E R   K +   + Y   A    +      +     + ++   V     +
Sbjct: 646 FGEP---VTSESRRRAKTINFGILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPY 702

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            +  + E+                      +  +++     AV   L G+A +LVKKA  
Sbjct: 703 FEKIREEARRTGRIRTLLGRIRPIPEIRSDNRNVREYGERMAVNSVLQGSAADLVKKAMV 762

Query: 512 AKHQGV------LQLWKDLTEGFACVVQEGGSISA 540
              Q V       +L   + +     V E  + S 
Sbjct: 763 DLSQAVASSGLKARLLLQVHDELLFEVSEDQAESL 797



 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 593 YGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645
           YG ++  N ++Q  + D++ + M + ++          ++L VHDE++ E  +    S+ 
Sbjct: 739 YGERMAVNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLS 798

Query: 646 TLC-SLMTKNPS 656
            +    M     
Sbjct: 799 AVVRKTMEGAIP 810


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 101/626 (16%), Positives = 198/626 (31%), Gaps = 124/626 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD 56
             +  D ET S             E   I   ++A++                   +P  
Sbjct: 320 KIVAFDTETDS------------LENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
                +Q + D+ V+   HN  F+  + KK                       P  L + 
Sbjct: 368 TALKAIQKILDKKVI--GHNLKFDFKMLKKYGLEIPTPHADTMILAWILDPDSPVGLDSV 425

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                      K +E       F +  I                Q   +Y   D   + +
Sbjct: 426 AK-RYLDHQNIKFKEVIGKRKNFSEVDI----------------QEAAKYAAEDALISLK 468

Query: 173 LFKRL---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L++ L           + + E     L   I  +G ++D++ + KLQ    ++ + L ++
Sbjct: 469 LYEILKEKLWEEVKWDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQE 528

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAK 275
           I +       + + T  L   LF +  + +   ++    T + +L+     H  I +L +
Sbjct: 529 IYRYAGSEF-NIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLLE 587

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              L++L S+   I+ L   ++    + ++       G + TGR S      QN+P    
Sbjct: 588 YRKLDKLLSTY--IIPLQEYAKK-DPNHKIYTNFLQTG-TATGRLSSKNPNLQNIPTSTD 643

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A   K+ V  D + IE R+LA  + +
Sbjct: 644 IN--------------------------IRDAFVAE--KEFVSLDYSQIELRLLAHFSKD 675

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTM 451
           +  I AF   +DI++ T  K F    +  +KE R + K +   L Y  G K         
Sbjct: 676 EHLINAFLEDKDIHLETAVKIFG---ENRAKEYRPVAKSINFGLIYGMGPKKLSETINVS 732

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPE 491
                  ++++  +  +  TF +  + E+      +                     +  
Sbjct: 733 TKEAKEFIEKYFASFPTVKTFLENTKIEAREKGYVETLLKRRRFFDFAAANARTLANFER 792

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            AV     G+A +++KKA     Q   +    L      + +      A     + + V 
Sbjct: 793 EAVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIFEIDSRDEAYEYKKIMQNVF 852

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDC 577
                   + +P    + +    G+ 
Sbjct: 853 -------KLEVPLKVGISFGKRWGEL 871


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/521 (16%), Positives = 165/521 (31%), Gaps = 91/521 (17%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF- 118
            D T   V H+                P     C + LA    LP   +     L   + 
Sbjct: 382 ADPTPTKVGHDLK---TAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDLVQRYL 438

Query: 119 -----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                 EH T   +  +LI        +        +  +   +   +     +E   + 
Sbjct: 439 HRTLDPEHSTNAGQQLSLI-----PEENEGAQTEQDSRDMVRARAIIDLA-EALEQHLDS 492

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +   L+D E  +  +   +   G  +D+D +  LQ   A E     +         + 
Sbjct: 493 LGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEIGREV- 551

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNRLA 283
           +      L++ LF   G+     ++           +L     H  +T L +   + RL 
Sbjct: 552 NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRDVTRLK 611

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            +      +  L ++V  DGR+  T Q   A+ TGR S      QN+P +          
Sbjct: 612 VT------VEGLRKSVGDDGRIHTTFQQTVAA-TGRLSSTEPNLQNIPIRT--------- 655

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +       L+ AD + IE R++A ++ ++  I+AF
Sbjct: 656 ---------------DEGRLIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIEAF 700

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            +GED++     KAF  P ++V+ E R   K M   L Y     G +   K         
Sbjct: 701 RSGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGLAYGLSAYGLSGQLKISVDEAKEQ 760

Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497
           ++ +         +     A +                      +   +      A+   
Sbjct: 761 MEAYFSRFGGVRDYLRDTVARARKDGYTETIFGRRRYVPDLNSDNRQKRAMAERIALNAP 820

Query: 498 LIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVV 532
           + G+A +++K A     + +       ++   + +   C V
Sbjct: 821 IQGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHDELVCEV 861


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 136/388 (35%), Gaps = 70/388 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-IIRSSRQT 238
             + E  L  +   +   G+++DL+ + +L     +  + L  +I +        +   T
Sbjct: 484 YQNIEHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVEDLTRNIREAAGEDEDFNVNST 543

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT---- 294
             L   LF   G+  +  ++    + +    + +L     +  +      I KLN+    
Sbjct: 544 KQLGHVLFDKMGLPALKKTKTGYSTNIE--VLEKLRDHHPIIPMIIDLRQISKLNSTYVK 601

Query: 295 -LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            L   +  D  ++  T      + TGR S      QN+P +                   
Sbjct: 602 GLVSLIDKDTNKIHSTFN-QTITTTGRISSSNPNLQNIPVRT------------------ 642

Query: 353 IADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R   I +S    LV AD + IE RVLA I+ ++  I +F N EDI+  
Sbjct: 643 ------EEGRIIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTR 696

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467
           T ++ FN PID+V+ E R+  K +   + Y     G AK            +  +     
Sbjct: 697 TASEVFNVPIDEVTSEMRSSAKAVNFGIVYGISDFGLAKGLSIARKDAKEYIDTYLSKYP 756

Query: 468 STSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
               + +                       +  S +  ++      A+   + G+A +++
Sbjct: 757 GVCKYMEDIVVTAKEQGYVTTMFNRRRYINEIYSKNFNVRSFGERTALNTPIQGSAADII 816

Query: 507 KKAWRA----------KHQGVLQLWKDL 524
           K A             K + +LQ+  +L
Sbjct: 817 KLAMVNVQNELNKRKLKAKLILQVHDEL 844



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
           +  +  V             + +    Y+N   S+    R++G +   N  +Q  + DI+
Sbjct: 760 KYMEDIVVTAKEQGYVTTMFNRR---RYINEIYSKNFNVRSFGERTALNTPIQGSAADII 816

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663
              M N             ++L VHDE++ +TP      V   L   M          PL
Sbjct: 817 KLAMVNVQNELNKRKLKAKLILQVHDELIIDTPMEEVEEVKALLKDKMENVVD--MSCPL 874

Query: 664 KAE 666
           KA+
Sbjct: 875 KAD 877


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 175/534 (32%), Gaps = 75/534 (14%)

Query: 19  VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
              +   E    + L   A        +         + L  +  D+      + S  + 
Sbjct: 315 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 373

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136
              + + GID+         VLA       +          S     ME G    A  F 
Sbjct: 374 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 421

Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           K        + S P D  +   + A +L        V+   +  K +      E+ L  +
Sbjct: 422 KEWGAGSLPVQSLPRDPAQYFGMFASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 479

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  +D   +  L   + +E ++  ++I  LT     + +    L   L+   G
Sbjct: 480 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLTGCEF-NIKSPKQLSDILYQRLG 538

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
           I+ VD ++ T   +L            IL   A+       +  L + +++   R+  T 
Sbjct: 539 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 598

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368
              G + TGR S      QN+P +                              +R    
Sbjct: 599 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 633

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +  +    + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K++
Sbjct: 634 VKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQE 693

Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           R   K +   L Y     G +K+ K   S     +  +       + F      ++    
Sbjct: 694 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 753

Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                +      AV  ++ G+A EL+K A       + 
Sbjct: 754 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 807


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/525 (16%), Positives = 173/525 (32%), Gaps = 100/525 (19%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +D  PV + D         ++ ++  +     V +N        K  L   I  K     
Sbjct: 376 FDPTPV-VEDC---EINCKEIQEFFDNYNGEIVTYN-------LKNILNRGISVKNCKLD 424

Query: 97  SVLARTN---------GLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSP 143
            ++A             LP          N+++   K +      K      C+ ++   
Sbjct: 425 MMIAYHLISSQTKENVELPIEHLTGIELDNYADKFGKEKPENISAKEYGKYLCQRTMGL- 483

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                    ++ + +  E          E    +  L++ E  L  +  ++  +G +ID 
Sbjct: 484 ---------LECYDILKE--------ELEDRNLMKVLNEIEMPLIEILSSMEIKGIKIDP 526

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           +     ++ +    +KL E I +       +      L   LF    +  V  ++    T
Sbjct: 527 EYFSNYEKELGDLIEKLQEKIYEEAGEEF-NINSPKQLAEILFFKLNLPPVKKTKTGLST 585

Query: 261 LKSILSH--SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            + +L     +  ++AK ++  R   +      ++ + +      R+  T    G + TG
Sbjct: 586 DEEVLEKLKVDGAEIAKAILEYR-KLAKLKNTYVDAIPKLRDEKDRVHTTFNQIGTT-TG 643

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   +A     L+ 
Sbjct: 644 RLSSSDPNLQNIP------------------------VKTDEGIKIRQGFVAEKNSVLMG 679

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437
            D + IE RVLA ++G++   +A+ N  D++  T  K F     ++VS+E+R I K +  
Sbjct: 680 IDYSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINF 739

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
           ++ Y     G AK            + ++         FE                    
Sbjct: 740 SIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFEKEIVEFTEKHGYTETFFGRR 799

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +   S +  ++ Q    AV   + GTA E++KK     ++ +
Sbjct: 800 RLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVMIEIYKYI 844



 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 70/211 (33%), Gaps = 36/211 (17%)

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK---HQGVLQLWKDLTEGFACVVQ 533
            AE + + M   Y +  ++     +  E +++A++     H    +   +L++      +
Sbjct: 670 VAEKNSVLMGIDYSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSRE 729

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV------YSDVKGDCSYLNTATSQL 587
           E         + +         +++ I    +   +      Y  VKG    +   T + 
Sbjct: 730 ERIIAKTINFSIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFEKEIVEFTEKH 789

Query: 588 MRERTYGGK---------------------LTENIVQAISRDILCEGMKNA-----TKNG 621
               T+ G+                        +++Q  + +I+ + M         ++G
Sbjct: 790 GYTETFFGRRRLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVMIEIYKYIKDRDG 849

Query: 622 YDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
             ++L VHDE++ E            +  +M
Sbjct: 850 ISLLLQVHDELIFEIEKEKLEMYREDIEKIM 880


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/544 (16%), Positives = 169/544 (31%), Gaps = 76/544 (13%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTN 103
           D T+            + D     V HN+    R+L +    +    +     + LA   
Sbjct: 373 DPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEHGWQL----EGVTMDTALAAYL 428

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH---VQAWQLFG 160
             P     A  AL       ++    A   +   G+ D    D   A     +     F 
Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPAAAADGQLAFGADDRAEQDALMAQARAVLDLGDAFT 488

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              K    A          L D E    +L   +   G   D   +  +++  A   ++ 
Sbjct: 489 TRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQA 540

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            ++          +      L+  LF   G+     ++    +            +  L 
Sbjct: 541 VKEAHAAVGREF-NLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHELP 599

Query: 281 RLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            L        KL      L + +++DGR+  T     A+ TGR S      QN+P +   
Sbjct: 600 VLMLRHREQAKLRVTVEGLIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT-- 656

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395
                                      +R   +   G + L+ AD + IE RV+A ++ +
Sbjct: 657 ----------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSED 694

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +GED++ T  ++ F    D V  E R   K M   L Y     G ++     
Sbjct: 695 AGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNID 754

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
            +   + +  + +       +      E+                      +   ++   
Sbjct: 755 PAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAE 814

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ---LWKDLTEGFACVVQEGGSISARRVANVP 547
             A+   + GTA ++VK A     + + +     + L +    +V E      ++V  + 
Sbjct: 815 RMALNAPIQGTAADIVKVAMLRVDKALTEAGLTSRMLLQVHDEIVLEIAKGERKQVEEIL 874

Query: 548 RLVM 551
           R  M
Sbjct: 875 RHEM 878



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 26/268 (9%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  A    I+         T   +   P  +    +   G+ +        G +  
Sbjct: 616 EGLIKTIATDGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G   + V  
Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVEKDAVDA 725

Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +   L   L+              AR + +         +  +H V+  +R 
Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARA 785

Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620
             Y++ + G   YL    S   + R    ++  N  +Q  + DI+   M    K      
Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLRVDKALTEAG 845

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTL 647
               ++L VHDEIV E        V  +
Sbjct: 846 LTSRMLLQVHDEIVLEIAKGERKQVEEI 873


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/500 (15%), Positives = 165/500 (33%), Gaps = 68/500 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L Q L D+ +     +     +   +   +DI ++      +LA       + +N   
Sbjct: 365 TPLRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYL---VNNENNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L    HL      K  +  + KG   + P D     H+ A  +  E  K+ +    +  
Sbjct: 419 DLGEVAHLYGDYSVKTDLEVYGKGKKKAVPEDDEFFEHLAAKVVVIEKLKQPLLEKLKDH 478

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           ++       E  +  +   +   G +++  ++ +L    A + ++L+  I +       +
Sbjct: 479 EQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFALKLQELEHKIYQQAGEEF-N 537

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293
                 L   LF    +  +  ++    + +    + QL     +         I K+  
Sbjct: 538 LNSPKQLGHILFEKLNLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQN 595

Query: 294 ----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L E +  DGR+         + TGR S      QN+P +                
Sbjct: 596 TYVKGLLECIQPDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 639

Query: 350 GETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         +R   + S  +G      D + +E RVLA ++G++   +AF +G D
Sbjct: 640 ---------DEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYD 689

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+  T  K F+    D+V+   R   K +   + Y     G +K            +  +
Sbjct: 690 IHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIDNY 749

Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501
            +       + D    E+                      +  ++      A+   + G+
Sbjct: 750 FEQYPQIKDYMDKAIKEAREKGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGS 809

Query: 502 ACELVKKAWRAKHQGVLQLW 521
           A +++K A     + + +L 
Sbjct: 810 AADIIKIAMINMQKKLDELH 829



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE 666
            +    +PL A+
Sbjct: 866 VT--LDVPLIAD 875


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/522 (17%), Positives = 178/522 (34%), Gaps = 99/522 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +   G+++  +++  T +LA        +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183
                   K   +    +  +A          +Y   D   +       L     PL + 
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYISLRFYLYFLKNLETPLLEL 484

Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   +   + + G ++D + +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290
            +   LF    +      +         L ++L  H  I ++     L +L S+    +L
Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLL 603

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL         + R+  +    G + TGR S      QN+P                   
Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+ 
Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + + E R++ K +   L Y  G    ++  K  A      ++++ +N 
Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750

Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506
            S   + +  + ++                            Y   ++   L G+A +++
Sbjct: 751 TSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810

Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           K A    ++        +LQ+  +L       + E      R
Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
            V  + K++  I   S R+           Y +   ++ M+   Y  +   +I+Q  + D
Sbjct: 759 TVKNKAKQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAAD 808

Query: 609 ILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
           ++   M    K       ++L +HDE++ E  D    + V     +M
Sbjct: 809 VIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 121/360 (33%), Gaps = 51/360 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +  ++   G  I    + +   L+ ++ + L + I      +I +      L
Sbjct: 463 EIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIYSHAG-MIFNINSPKQL 521

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              LF    +        T   +L          D IL     S  +   ++ L + + S
Sbjct: 522 ANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYRKISKVSSTYIDGLKKHIRS 581

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D ++  +      ++TGR S      QN+  +                            
Sbjct: 582 DQKIHTSFN-QTMTQTGRLSSSEPNLQNISIR------------------------DELG 616

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   +A  G  L+ AD + IE R+LA +A ED  IKAF  G DI+  T    FN   
Sbjct: 617 KEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLDIHTKTATLIFNCSP 676

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---- 473
           ++V + +R I K +   + Y     G +          G  ++ + ++      +     
Sbjct: 677 EEVDEHKRRIAKTVNFGIVYGQTEFGLSSQLNITRKEAGEFMKMYFESYPKIHEYMNQLI 736

Query: 474 -----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                            +  +    +   ++     A+   + G+A +L+K A     Q 
Sbjct: 737 DFCKENGYVETLFHRRREIPEINDKNFMTREFGKRAAMNAPIQGSAADLIKIAMLKMDQA 796


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 146/408 (35%), Gaps = 78/408 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  +  +   +   G  +DL ++ +LQ     + +   E    +    I +     
Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 559

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+     ++                  H  +  L     + RL  +    
Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L +AV++DGR+  T     A+ TGR S      QN+P +                
Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     AS  +R   +  +G  +L+ AD + IE R++A ++G++  I+AF  GED+
Sbjct: 658 ---------DASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++AF  PID+V+ E R   K M   L Y     G ++  K         +  +  
Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +                         + +S +  +++     A+   + G+A 
Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +++K A               + +LQ+  +L    A   +E      R
Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  +  +   +   G  +DL ++ +LQ     + +   E    +    I +     
Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 559

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+     ++                  H  +  L     + RL  +    
Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L +AV++DGR+  T     A+ TGR S      QN+P +                
Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R   +  +G  +L+ AD + IE R++A ++G++  I+AF  GED+
Sbjct: 658 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++AF  PID+V+ E R   K M   L Y     G ++  K         +  +  
Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +                         + +S +  +++     A+   + G+A 
Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +++K A               + +LQ+  +L    A   +E      R
Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 91/517 (17%), Positives = 178/517 (34%), Gaps = 81/517 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC--- 113
           L++++ +  V  +++N       FK  L +    K      ++A       +  +     
Sbjct: 403 LIKFISELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVIIPI 455

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               N      K   GKA I     G              +  +        +      E
Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGL-GILAIYDEINHILHK-----EE 509

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L+  LI     E  L  +   +  +G +ID+         + +E  K+++ I +      
Sbjct: 510 LYDILI---QNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAGEEF 566

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGSA 288
            +      L   LF+   +     ++ G    ++   ++         L+L+    +   
Sbjct: 567 -NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 625

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++TL   V S+ R+  +    G + TGR S      QN+P +               
Sbjct: 626 TTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD------------ 672

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D+
Sbjct: 673 ------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDL 720

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  + FN    D V++EQR I K++  ++ Y     G AK  K         ++++ 
Sbjct: 721 HDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYF 780

Query: 464 QNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +     +TFE                          +S +  ++ Q    AV   + GTA
Sbjct: 781 EQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTA 840

Query: 503 CELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534
            E++KK         K +  + L   + +     V+E
Sbjct: 841 AEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEE 877



 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    +    ++  N ++Q  + ++L + M         K+   ++L V
Sbjct: 808 GRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQV 867

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  ++       +   +M
Sbjct: 868 HDELIFEVEESSVEKYSEILADIM 891


>gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e]
 gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e]
          Length = 306

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 122/286 (42%), Gaps = 45/286 (15%)

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA- 493
            EL LGY+GG   F T A + GLDL + ++ +  T     W      + W + Q  +   
Sbjct: 21  CELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPP 80

Query: 494 -----------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA-- 540
                      + DK +   C+ +K+ WR  H   +  W+DL +G    V+  G      
Sbjct: 81  HPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 140

Query: 541 -------RRVANVPRLVMRRHKR------DVHIVLPSSRRLVYS---------------- 571
                   R   + R V             + + LPS R L Y                 
Sbjct: 141 AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 200

Query: 572 --DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
             +V+      N  T Q     T+GGK  ENIVQA+ RD+L   M N    GY IVL+VH
Sbjct: 201 NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 260

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V ETPDT  ++V  L  LM   P WA G PL AEG E KRY K
Sbjct: 261 DELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/561 (14%), Positives = 164/561 (29%), Gaps = 83/561 (14%)

Query: 34  AYAWDDEPVKLWDRTEQSAM-----PSDLLQY--------LRDETVMCVAHNSLFERILF 80
            +A     V                P++L +         L D     V HN+     + 
Sbjct: 353 TWALGTGSVTEVALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHNAKGAMRVL 412

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            +              + LA     P        AL+      ++    A   +   G+ 
Sbjct: 413 AEHGW---SVAGVGMDTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAAADGQLAFGAD 469

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           +    +           L   +  R  +       R     D E     L   +   G  
Sbjct: 470 EGAEAEVLMVQARAILDLGETFESRLADVGAADLLR-----DMELPTSALLARMERHGIA 524

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
            D + +  ++++ A   ++  ++          +      L+  LF    +     ++  
Sbjct: 525 ADREHLQAMEQMFAGAVQQAVKEAHAAAGREF-NLGSPKQLQEVLFGELNLPKTKKTKTG 583

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASR 316
             +            D  L  +        KL      L + +++DGR+  T     A+ 
Sbjct: 584 YTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA- 642

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P +                              +R   +   G + 
Sbjct: 643 TGRLSSTDPNLQNIPVRT------------------------DEGRAIRRGFVVGEGFES 678

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE RV+A ++ +    +AF +GED++ T  A+ F+     V  E R   K M
Sbjct: 679 LMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAM 738

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------- 481
              L Y     G ++     A+     +  + +       +      E+           
Sbjct: 739 SYGLAYGLSAFGLSQQLNIEAAEARGLMDAYFERFGGVRDYLRRVVDEARATGYTATLFG 798

Query: 482 -----------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDL 524
                      +   ++     A+   + GTA ++VK A     + +       ++   +
Sbjct: 799 RRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDKALREADLKSRMLLQV 858

Query: 525 TEGFACVVQEGGSISARRVAN 545
            +     +  G   +A  +  
Sbjct: 859 HDEIVLEIAPGERAAAEELVR 879


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/529 (18%), Positives = 166/529 (31%), Gaps = 97/529 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           V  N  F+  L    L ++        T +LA      S +    LA  F  +  K  + 
Sbjct: 398 VGQNLKFDLSLLYSHLEMEPIEPE-ADTMILAWLLDPGSRVGLDILAQKFLGYQMKSFKE 456

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-------- 180
                   K   D               +    Y   D  ATR+L+ RL  L        
Sbjct: 457 TV------KKGEDFSSVA---------LEEAAFYAAEDAWATRQLYFRLTELFKKGGLEH 501

Query: 181 -----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 + E     +   +   G R+D   +  L+E ++ E  +L ++I  L      + 
Sbjct: 502 LLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLAGTEF-NI 560

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           + T  L   LF   G+     ++    T +S+L +        + IL            +
Sbjct: 561 KSTQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYREHQKMLSTYV 620

Query: 293 NTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           + L +    D  GR+  T    G + TGR +      QN+P +                 
Sbjct: 621 DPLLKLAEKDPEGRIHTTFVQTG-TATGRLASKDPNLQNIPVRS---------------- 663

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        VR   +A  G +L   D + IE R+LA  +G+    +AF  GEDI++
Sbjct: 664 --------ELGRRVRRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGEDIHM 715

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T  K F  P +  +K  R   K +   L Y  G    A             ++ +    
Sbjct: 716 ATAIKLFG-PEEAAAK--RNFAKSINFGLLYGMGSRKLADELGITTKEAKEIIEAYFAAF 772

Query: 467 KSTSTFEDWEQAESHHL--------------------WMQDQYPEFAVKDKLIGTACELV 506
            +  ++ +  Q ++                        M+      AV     G+A +L+
Sbjct: 773 PTVRSYLEQIQQQAKEQGYVETLLRRRRVFDYEGASGMMKAAILREAVNTVFQGSAADLI 832

Query: 507 KKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISARRVAN 545
           K A       +          LQ+  +L         E  +   R    
Sbjct: 833 KLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQAEETAARFRHTME 881


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 83/508 (16%), Positives = 154/508 (30%), Gaps = 71/508 (13%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D T+            + D     V HN+     + +         +     + LA    
Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH---VQAWQLFGE 161
            P     A  AL       ++    A   +   G+ D    D   A     +     F  
Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTT 489

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             K    A          L D E    +L   +   G   D   +  +++  A   ++  
Sbjct: 490 RLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAV 541

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++          +      L+  LF   G+     ++    +            +  L  
Sbjct: 542 KEAHAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPV 600

Query: 282 LASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L        KL      L + +++DGR+  T     A+ TGR S      QN+P +    
Sbjct: 601 LMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--- 656

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396
                                     +R   +   G + L+ AD + IE RV+A ++ + 
Sbjct: 657 ---------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDA 695

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+AF +GED++ T  ++ F    D V  E R   K M   L Y     G ++      
Sbjct: 696 GLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDP 755

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
           +   + +  + +       +      E+                      +   ++    
Sbjct: 756 AEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAER 815

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            A+   + GTA ++VK A     + + +
Sbjct: 816 MALNAPIQGTAADIVKVAMLRVDKALTE 843



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 26/268 (9%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  A    I+         T   +   P  +    +   G+ +        G +  
Sbjct: 616 EGLIKTIAADGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G   + V  
Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVGKDAVDA 725

Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +   L   L+              AR + +         +  +H V+  +R 
Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARA 785

Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620
             Y++ + G   YL    S   + R    ++  N  +Q  + DI+   M    K      
Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLRVDKALTEAK 845

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTL 647
               ++L VHDEIV E        V  +
Sbjct: 846 LTSRMLLQVHDEIVLEIAKGERKQVEEI 873


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  +  +   +   G  +DL ++ +LQ     + +   E    +    I +     
Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 559

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+     ++                  H  +  L     + RL  +    
Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L +AV++DGR+  T     A+ TGR S      QN+P +                
Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R   +  +G  +L+ AD + IE R++A ++G++  I+AF  GED+
Sbjct: 658 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++AF  PID+V+ E R   K M   L Y     G ++  K         +  +  
Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +                         + +S +  +++     A+   + G+A 
Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +++K A               + +LQ+  +L    A   +E      R
Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/514 (15%), Positives = 168/514 (32%), Gaps = 79/514 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            ++   L DE +     +    R +     LGI      +    +LA       + +N  
Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 417

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172
             L    HL      K  +  + KG  +  P D     NH+ +     E  K ++    +
Sbjct: 418 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLK 477

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++       E     +   +   G +++   +++LQ     + K+L++ I        
Sbjct: 478 EHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQAGEKF 537

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      L   LF   G+ ++  ++     +++ +      + +  +++  R  +   +
Sbjct: 538 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQS 596

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              +  L + +  DGR+         + TGR S      QN+P +               
Sbjct: 597 T-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------------- 640

Query: 349 RGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                          +R   +    +G      D + +E RVLA ++G+    +AF  G 
Sbjct: 641 ----------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGY 689

Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           DI+  T  K F+    D+V+   R   K +   + Y     G +K            +  
Sbjct: 690 DIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDN 749

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           + +       + D    E+                         ++      A+   + G
Sbjct: 750 YFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQG 809

Query: 501 TACELVKKAWRA----------KHQGVLQLWKDL 524
           +A +++K A             K + V+Q+  +L
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +   +M   
Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 866

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 867 VK--LDVPLIADSGWGHNWY 884


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/501 (17%), Positives = 164/501 (32%), Gaps = 88/501 (17%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D  V    H +    +      G           + LA     P   S     L+L +
Sbjct: 390 LADPHVPKALHEAK---LAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRY 446

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                     K  +             D +     QA Q         V+    L + L 
Sbjct: 447 L---------KRELRADNPEQQQLSLLDDSDGVDDQAVQTLLLRASAVVDLADALDEELS 497

Query: 179 P------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                  L + E  +  +   +   G  +DL+++  LQ   A + +   E    +    I
Sbjct: 498 RIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIGKQI 557

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRL 282
            +      L++ LF    +     ++                  H  +  L       RL
Sbjct: 558 -NLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRL 616

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +      ++ L  AV+SDGR+  T     A+ TGR S      QN+P +  +      
Sbjct: 617 KVT------VDGLLNAVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------ 663

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   +  +G  +L+ AD + IE R++A ++ ++  I+A
Sbjct: 664 ------------------GRRIRDAFVVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEA 705

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F  GED++    ++AF+ PID+V+ E R   K M   L Y     G ++  K        
Sbjct: 706 FNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKE 765

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            ++Q+         +                         + +S +  +++     A+  
Sbjct: 766 QMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNA 825

Query: 497 KLIGTACELVKKAWRAKHQGV 517
            + G+A +++K A     Q +
Sbjct: 826 PIQGSAADIIKVAMINVDQAI 846


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 169/520 (32%), Gaps = 95/520 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +    +++  +++  T +LA        +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183
                   K   +    +  +A          +Y   D   T       L     PL + 
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLETPLLEL 484

Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   +   + + G ++D + +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            +   LF    + L    +G          +  L               + KL       
Sbjct: 544 QVGDILFEK--LKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILDYRELAKLYSTYCEP 601

Query: 295 LSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           L +    D   R+  +    G + TGR S      QN+P                     
Sbjct: 602 LLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------------------- 641

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                G  +   +SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T
Sbjct: 642 -----GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHART 696

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468
               F     + + E R++ K +   L Y  G    ++  K  A      ++++ +N  S
Sbjct: 697 AIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFTS 752

Query: 469 TSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELVKK 508
              + +  + E+                            Y   ++   L G+A +++K 
Sbjct: 753 IKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVIKL 812

Query: 509 AWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           A    ++        +LQ+  +L       + E      R
Sbjct: 813 AMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           K++  I   S R+           Y +   ++ M+   Y  +   +I+Q  + D++   M
Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAM 814

Query: 615 KNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
               K       ++L +HDE++ E  D    + V     +M
Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 83/523 (15%), Positives = 173/523 (33%), Gaps = 81/523 (15%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
            D  E+     ++   L DE +     +     ++    LGI      +    +LA    
Sbjct: 359 VDLLEE----DNIKHILEDEKIKKNVFDLK-RSMVGAHRLGIHTHGLDY--DMLLASYL- 410

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYC 163
              + +N    L    HL      K  +  + KG  +  P D     NH+ +     E  
Sbjct: 411 --VNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESL 468

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           K+ +    +  ++       E     +   +   G +++   +++LQ   A + + L++ 
Sbjct: 469 KKTLLEKLKDHEQDDLFDTIEIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKK 528

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLIL 279
           I +       +      L   LF   G+ ++  ++     +++ +      + + K+++ 
Sbjct: 529 IYQQAGEEF-NLNSPKQLGHILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVKEILD 587

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R  +   +   +  L + +  DGR+         + TGR S      QN+P +      
Sbjct: 588 YRQIAKIQST-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT----- 640

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                   +R   +    +G      D + +E RVLA ++G+  
Sbjct: 641 -------------------EEGKQIRKAFVPSDPDGYIF-SCDYSQVELRVLAHVSGDVH 680

Query: 398 KIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             +AF  G DI+  T  K F+    DKV+   R   K +   + Y     G +K      
Sbjct: 681 MQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISR 740

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPE 491
                 +  + +       + D    E+                         ++     
Sbjct: 741 KQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKYTVRAFAER 800

Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            A+   + G+A +++K A             K + V+Q+  +L
Sbjct: 801 TAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843



 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 15/149 (10%)

Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593
           IS ++          ++   K  +   +  +R   Y++       YL    ++    R +
Sbjct: 738 ISRKQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKYTVRAF 797

Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
             +   N  +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  
Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857

Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673
           +   +M         +PL A+ G+    Y
Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  +  +   +   G  +DL ++ +LQ     + +   E    +    I +     
Sbjct: 500 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 558

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+     ++                  H  +  L     + RL  +    
Sbjct: 559 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 614

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L +AV++DGR+  T     A+ TGR S      QN+P +                
Sbjct: 615 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 656

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R   +  +G  +L+ AD + IE R++A ++G++  I+AF  GED+
Sbjct: 657 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 707

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++AF  PID+V+ E R   K M   L Y     G ++  K         +  +  
Sbjct: 708 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 767

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +                         + +S +  +++     A+   + G+A 
Sbjct: 768 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 827

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +++K A               + +LQ+  +L    A   +E      R
Sbjct: 828 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 875


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 90/530 (16%), Positives = 171/530 (32%), Gaps = 85/530 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D  V   +H+      +     G           + LA     P   S   A LAL +
Sbjct: 420 LADPAVPKASHDVK---AVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSFDLADLALRY 476

Query: 119 SEHLTKMEEGKALIARFC----KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                 M EG     +      +   D    D          +L         E  +   
Sbjct: 477 LRRELAM-EGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELADALGAELAEKEQNGL 535

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                L + E+ L  +   +   G  +D   +  L+   A +  +  +D   +    I +
Sbjct: 536 -----LLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVIGKEI-N 589

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILS------HSNITQLAKDLILNRLASSGSA 288
                 L++ LF   G+     ++    +              +  + L+L+R   +   
Sbjct: 590 LGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHR--DATRL 647

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
            + ++ L +++++DGR+  T     A+ TGR S      QN+P +               
Sbjct: 648 KVTVDGLLKSIAADGRIHTTYSQTIAA-TGRLSSTEPNLQNVPIRT-------------- 692

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      A   +R+  +  +G  +L+ AD + IE R++A ++ +   I+AF +  D
Sbjct: 693 ----------AAGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRD 742

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +  T +K F      VS EQRA  K M   L Y     G +   +         +  + 
Sbjct: 743 FHSETASKVFGVDAADVSPEQRAKIKAMNYGLAYGLSAFGLSGQLRISTEEARGLMDDYF 802

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       +                            S +   ++     A+   + G+A
Sbjct: 803 ETFGGVRDYLRSIVDVARKDGYTATMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGSA 862

Query: 503 CELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARR 542
            +++K A    H          + +LQ+  +L    A   ++      RR
Sbjct: 863 ADIIKVAMLRVHAALQAEGLRSRMLLQVHDELVLEVADGERDAVDALVRR 912



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGG 595
           +  AR + +         +  +  ++  +R+  Y + + G   YL   TS   + R    
Sbjct: 791 TEEARGLMDDYFETFGGVRDYLRSIVDVARKDGYTATMLGRRRYLPDLTSDNRQRREMAE 850

Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           ++  N  +Q  + DI+   M          G    ++L VHDE+V E  D    +V  L 
Sbjct: 851 RMALNAPIQGSAADIIKVAMLRVHAALQAEGLRSRMLLQVHDELVLEVADGERDAVDALV 910

Query: 649 SL-MTKN 654
              M   
Sbjct: 911 RREMAAA 917


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 88/514 (17%), Positives = 176/514 (34%), Gaps = 72/514 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +A  +E    +   E +       ++++DET      +S    +  +     D+  K
Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSDAFKEWVQDETKKKWVFDSKRAVVALR---WHDVDLK 391

Query: 92  RWICTSVLARTNGLP--SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                 +LA     P  S    A +A  +  ++   +E       + KG+  + P +   
Sbjct: 392 GVDNDVLLASYVVNPQKSYEDVASVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDEL 446

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208
             H+   +        D+            L  D E  L L+   +   G ++DL  + K
Sbjct: 447 KGHLGR-KAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDLKRLEK 505

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           + E + ++ K+ +E I +L      +      L + LF   G+ ++  ++       S  
Sbjct: 506 MGEELTKKLKEYEETIHRLAGETF-NINSPKQLGVILFEKLGLPIIKKTKTG--YSTSAD 562

Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
            + +L     + R       I KL +     L +    D  ++         ++TGR S 
Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFN-QALTQTGRLSS 621

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P +                              +R   + S  G  +  AD 
Sbjct: 622 TDPNLQNIPIR------------------------LEEGRKIRQAFVPSKEGWLMFAADY 657

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA I+ ++  I+AF    DI+  T    F+   ++V+   R   K +   + Y
Sbjct: 658 SQIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVY 717

Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WE 476
                G ++            ++++  + K   T+ +                       
Sbjct: 718 GISDYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIP 777

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
              S +  ++      A+   + G+A +++KKA 
Sbjct: 778 DITSRNFNIKSFAERTAMNTPIQGSAADIIKKAM 811


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 86/547 (15%)

Query: 45  WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            D    +    D L   L D       H +    +      G           + LA   
Sbjct: 369 IDTAMLTPDDDDALAAWLADPDNPKALHEAK---LAMHDLAGRGWTLGGITSDTALAAYL 425

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             P         L+      ++        +F     +    D      +          
Sbjct: 426 VRPGQRSFTLDDLSLRYLRRELRAETPEQEQFSLLD-NVDEVDKQAIQTLILRARAVVDL 484

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              ++A  +L      L + E  +  +   +   G   DL L+ +LQ     + +   E 
Sbjct: 485 AAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEA 544

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSI---LSHSNITQL 273
              +    I  S     L++ LF   G+     ++         L+S+     H  +  L
Sbjct: 545 AYAVIGKQINLS-SPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHL 603

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                + RL  +      ++ L  AV++DGR+  T     A+ TGR S      QN+P +
Sbjct: 604 LTHRDVTRLKVT------VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIR 656

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADLAGIEARVL 389
                                     A   +R   +         +L+ AD + IE R++
Sbjct: 657 T------------------------NAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 692

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++ ++  I+AF  GED++    ++AF  PI+ ++ E R   K M   L Y     G A
Sbjct: 693 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 752

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLW 484
              K       L ++Q+         +                         + +S +  
Sbjct: 753 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 812

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           +++     A+   + G+A +++K A  A            + +LQ+  +L    A   +E
Sbjct: 813 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 872

Query: 535 GGSISAR 541
                 R
Sbjct: 873 QIEAMVR 879


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 144/408 (35%), Gaps = 78/408 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E  +  L   +   G  +DL ++  LQ   A + +   E    +    I +     
Sbjct: 496 LTDMELPVQHLLAEMETAGIAVDLTMLGGLQRHFADQIRDAAEAAYAVIGKQI-NLGSPK 554

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF    +     ++                  H  +  L     + RL  +    
Sbjct: 555 QLQVVLFDELRMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 610

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L  +V+ DGR+  T     A+ TGR S      QN+P +                
Sbjct: 611 --VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 652

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R   +  +G  +L+ AD + IE R++A ++ ++  I+AF  GED+
Sbjct: 653 ---------DAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++AF  PID+V+ E R   K M   L Y     G +   K       + + Q+  
Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFS 763

Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +                         + +S +  +++     A+   + G+A 
Sbjct: 764 RFGGVRDYLMAVVEQARKDGYTSTVLGRRRHLPELDSSNRQVREAAERAALNAPIQGSAA 823

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +++K A             K + +LQ+  +L    A   +E      R
Sbjct: 824 DIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGEREQIEALVR 871


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 86/547 (15%)

Query: 45  WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            D    +    D L   L D       H +    +      G           + LA   
Sbjct: 373 IDTAMLTPDDDDALAAWLADPDNPKALHEAK---LAMHDLAGRGWTLGGITSDTALAAYL 429

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             P         L+      ++        +F     +    D      +          
Sbjct: 430 VRPGQRSFTLDDLSLRYLRRELRAETPEQEQFSLLD-NVDEVDKQAIQTLILRARAVVDL 488

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              ++A  +L      L + E  +  +   +   G   DL L+ +LQ     + +   E 
Sbjct: 489 AAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEA 548

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSI---LSHSNITQL 273
              +    I  S     L++ LF   G+     ++         L+S+     H  +  L
Sbjct: 549 AYAVIGKQINLS-SPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHL 607

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                + RL  +      ++ L  AV++DGR+  T     A+ TGR S      QN+P +
Sbjct: 608 LTHRDVTRLKVT------VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIR 660

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADLAGIEARVL 389
                                     A   +R   +         +L+ AD + IE R++
Sbjct: 661 T------------------------NAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 696

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++ ++  I+AF  GED++    ++AF  PI+ ++ E R   K M   L Y     G A
Sbjct: 697 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 756

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLW 484
              K       L ++Q+         +                         + +S +  
Sbjct: 757 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 816

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           +++     A+   + G+A +++K A  A            + +LQ+  +L    A   +E
Sbjct: 817 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 876

Query: 535 GGSISAR 541
                 R
Sbjct: 877 QIEAMVR 883


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 159/493 (32%), Gaps = 72/493 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D  V    H +    +      G           + LA     P     A   L+   
Sbjct: 390 LADPHVPKALHEAK---LAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRY 446

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              ++        +           D      +       +      E    +    + L
Sbjct: 447 LKRELRADNPEQQQLSLLDDSDGVDDQAVQTLLLRASAVVDLADALDEELARIDSSAL-L 505

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            + E  +  +   +   G  +DL+++  LQ   A + +   E    +    I +      
Sbjct: 506 GNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIGKQI-NLGSPKQ 564

Query: 241 LRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAIL 290
           L++ LF    +     ++                  H  +  L       RL  +     
Sbjct: 565 LQVVLFDELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT----- 619

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++ L  AV+SDGR+  T     A+ TGR S      QN+P +  +              
Sbjct: 620 -VDGLLNAVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA-------------- 663

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +  +G  +L+ AD + IE R++A ++ ++  I+AF  GED++
Sbjct: 664 ----------GRRIRDAFVVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLH 713

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               ++AF+ PID+V+ E R   K M   L Y     G ++  K         ++Q+   
Sbjct: 714 SFVASRAFSVPIDEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQYFAR 773

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 +                         + +S +  +++     A+   + G+A +
Sbjct: 774 FGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAAD 833

Query: 505 LVKKAWRAKHQGV 517
           ++K A     Q +
Sbjct: 834 IIKVAMINVDQAI 846


>gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 875

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 155/474 (32%), Gaps = 62/474 (13%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
             V +++    +   + +G  I         +LA     PS   +   ++          
Sbjct: 366 TKVVYDAKKTMVAMNR-MGFAI--SGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 419

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
           E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D E  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAGHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELP 479

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +  +G  +D + +  ++  +A   K L+  I  L      +      L + LF
Sbjct: 480 LTFVLAQMEMQGVSVDTERLENMKVELAGRLKTLETSIHSLAGEEF-NINSPKQLGVILF 538

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302
               +  V  ++    T   +L   +      D IL            +  L +      
Sbjct: 539 EKLELPPVKKTKTGYSTAADVLESLSGKHDIIDEILLYRQLGKIQSTYIEGLLKVTDKET 598

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            ++         ++TGR S      QN+P +                             
Sbjct: 599 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 633

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   
Sbjct: 634 KIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 693

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474
           ++V    R   K +   + Y     G ++            + ++  +  +   +     
Sbjct: 694 EEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMHDIV 753

Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                               +  S +  ++      A+   + G+A +++KKA 
Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 92/537 (17%), Positives = 180/537 (33%), Gaps = 79/537 (14%)

Query: 45   WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN 103
            W+    +    +LL YL D     +   ++ ER+L      ID         +  +A   
Sbjct: 517  WEL-SGTVQDVNLLDYLADPDASRLKFAAVTERLL---GWSIDEKPSDIGKISEQMAFDL 572

Query: 104  GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            G  +    A  A   +   +K   G   +    +  ++   Y  +  + +          
Sbjct: 573  GWGNVTDAAGAAAVTASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLP--------- 623

Query: 164  KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               +   +  ++R+  L D E  L  L + + D G  +D  L+ +  + ++ E K+ +  
Sbjct: 624  ---ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTETA 680

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +     +  S     L+  LF   G+     ++    +         L       +  
Sbjct: 681  AFEAIGREVNLS-SPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQAL 739

Query: 284  SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                   KL      L + ++ DGR+  T     A+ TGR S      QN+P +      
Sbjct: 740  LYFRDRSKLLQIVRNLGDRIAPDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDD--- 795

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA      L+ AD + IE R++A ++G++  
Sbjct: 796  ---------------------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGL 834

Query: 399  IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            I AF +GED++ +  A  F    + V+  QR   K     L Y     G A   +     
Sbjct: 835  IAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGE 894

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHL------WMQDQY---------------PEFA 493
                ++ +     +   + +   +E+  +      W + +Y                  A
Sbjct: 895  AKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAA 954

Query: 494  VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544
            +   + G+A +L+K+A       +       ++   + +     V  G   + RRV 
Sbjct: 955  LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVV 1011


>gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20]
 gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains
           [Leuconostoc citreum KM20]
          Length = 893

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/489 (16%), Positives = 165/489 (33%), Gaps = 65/489 (13%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   + +  +     N   + ILFK+ LG+ +   ++    V    +   +  + + LA
Sbjct: 372 ELRAVIENGDIKKNVFNVKAQLILFKR-LGLTLKGAQFDFLLVAYLLDTTDNDNEMSTLA 430

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174
             F  +LT+ EE       + KG+  + P D      H+          +    +  +  
Sbjct: 431 QRFDVYLTEDEEI------YGKGAKYAVPDDEELVLMHLAHKADALIQLEMPALSALQSH 484

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           ++    ++ E  L  +   +  +G++ID   + ++     + R    E+ + L  G   +
Sbjct: 485 QQTHLYTEIELPLAHVLAEMEYQGFKIDRKRL-QVIGEDLEARIHTIEEAIYLEAGEKFN 543

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L + LF   G+ ++  ++    T   +L          + IL     +      
Sbjct: 544 LNSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVEHILQYRQLAKIKSTY 603

Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           +  L   V   D ++         ++TGR S      QN+P +                 
Sbjct: 604 VEGLLAVVHTEDSKIHTRF-LQTLTQTGRLSSVDPNLQNIPMRT---------------- 646

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   + S    ++  AD + IE RVLA I G+    +AF NGEDI+
Sbjct: 647 --------EEGRQIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQRAFLNGEDIH 698

Query: 410 VTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
             T    F    +  V    R   K +   + Y     G +       +     ++ + +
Sbjct: 699 AETARAVFGLDNNAPVDPLMRRTAKAVNFGIVYGISDYGLSNNLGISRAEAKRFIETYFK 758

Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503
                  +    +A++H                        ++      A+   + G+A 
Sbjct: 759 EFPQIHEWMTKIKAQAHEQGYVETIAKRRRYLPEIKSKNFNLRSFAERTAMNSPIQGSAA 818

Query: 504 ELVKKAWRA 512
           +++K A   
Sbjct: 819 DIIKIAMIK 827



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 538 ISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             A+R          +    +  I   +  +     +     YL    S+    R++  +
Sbjct: 747 AEAKRFIETYFKEFPQIHEWMTKIKAQAHEQGYVETIAKRRRYLPEIKSKNFNLRSFAER 806

Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
              N  +Q  + DI+   M              +I+L VHDE++ E P+    ++  + 
Sbjct: 807 TAMNSPIQGSAADIIKIAMIKVADALKDNQLQANILLQVHDELIFEAPEDEIETLRDIV 865


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 126/367 (34%), Gaps = 54/367 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            SD +  +  +   +   G  +D + + +L      E  KL+E+I  L+     +     
Sbjct: 473 YSDIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIGSPK 531

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293
            L   LF    +     S            + +L++      DL+L     +       +
Sbjct: 532 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 591

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +      T     ++ TGR S      QN+P +                    
Sbjct: 592 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPIRS------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 633 -----SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN    +++ E R   K +   + Y     G AK            ++++    K  
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNATNGEASEYIKKYFAEYKGV 747

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A +                   H   ++      A+   + GT  +++K A 
Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 807

Query: 511 RAKHQGV 517
               Q +
Sbjct: 808 INLDQEI 814


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 87/549 (15%), Positives = 166/549 (30%), Gaps = 75/549 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
           L  +L DE+     H++    +         +  +   C + LA    +P     L    
Sbjct: 382 LRAWLGDESRPKAVHDAKGPMLAL---WAQGMELRGLTCDTALAAYLAMPGQRTFLLEDL 438

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +       L    E     + F     D+      RA  V+      E        T  +
Sbjct: 439 VRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALAVRELADALEAFLEPRGGTHLM 498

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                   + E  L  +   +   G   D D    L+       K+  E           
Sbjct: 499 R-------EVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAHAAVGEQF- 550

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L+  LF+   +     ++    +            +  L  +        KL 
Sbjct: 551 NLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLRHRDQAKLK 610

Query: 293 ---NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L + ++ DGR+  T     A+ TGR S      QN+P +                
Sbjct: 611 VTVEGLVKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIPIRT--------------- 654

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    +    +R   +   G   L+ AD + IE R++A ++G++  I AF +G D 
Sbjct: 655 ---------VEGRRIRQGFVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDF 705

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           + TT A+ F+   ++V+ E RA  K M   L Y     G A              +++ +
Sbjct: 706 HKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAYGLSDFGLAGQLNIPVQEAKALKEEYFE 765

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
                  F +   A++                      +   ++     A+   + G+A 
Sbjct: 766 EFGGVRDFLNAIVAQARQDGYTETIMGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAA 825

Query: 504 ELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +++K A       V       ++   + +     V  G   + R +           +  
Sbjct: 826 DIIKVAMLNVQSAVKEAALGSRMLLQVHDELVFEVAPGELETLRELVTDRMNAAYSLRVP 885

Query: 558 VHIVLPSSR 566
           + + +   R
Sbjct: 886 LEVSVGVGR 894



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M N          G  ++L VHDE+V E       ++  L 
Sbjct: 820 IQGSAADIIKVAMLNVQSAVKEAALGSRMLLQVHDELVFEVAPGELETLRELV 872


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 175/534 (32%), Gaps = 75/534 (14%)

Query: 19  VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
              +   E    + L   A        +         + L  +  D+      + S  + 
Sbjct: 315 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 373

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136
              + + GID+         VLA       +          S     ME G    A  F 
Sbjct: 374 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 421

Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           K        + S P D ++   + A +L        V+   +  K +      E+ L  +
Sbjct: 422 KEWGAGSLPVQSLPRDPSQYFGMFASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 479

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  +D   +  L   + +E ++  ++I  L      + +    L   L+   G
Sbjct: 480 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLG 538

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
           I+ VD ++ T   +L            IL   A+       +  L + +++   R+  T 
Sbjct: 539 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 598

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368
              G + TGR S      QN+P +                              +R    
Sbjct: 599 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 633

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +  +    + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+Q
Sbjct: 634 VKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQ 693

Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           R   K +   L Y     G +K+ K   S     +  +       + F      ++    
Sbjct: 694 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 753

Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                +      AV  ++ G+A EL+K A       + 
Sbjct: 754 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 807


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/513 (16%), Positives = 173/513 (33%), Gaps = 70/513 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +A  +E    +   E +       ++++DET      +S    +  +     D+  K
Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSEAFKEWVQDETKKKWVFDSKRAVVALR---WHDVDLK 391

Query: 92  RWICTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                 +LA     P       A +A  +  ++   +E       + KG+  + P +   
Sbjct: 392 GVDNDVLLASYVVNPQKTYEDVASVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDEL 446

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208
             H+   +        D+            L  D E  L L+   +   G ++D+  +  
Sbjct: 447 KEHLGR-KAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDIKRLEN 505

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           + E + ++ K+ +E I +L      +      L + LF   G+ ++  ++       S  
Sbjct: 506 MGEELTKKLKEYEETIHRLAGETF-NINSPKQLGVILFEKLGLPIIKKTKTG--YSTSAD 562

Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            + +L     + R       I KL +     L +    D     T      ++TGR S  
Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLSST 622

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382
               QN+P +                              +R   + S  G  +  AD +
Sbjct: 623 DPNLQNIPIR------------------------LEEGRKIRQAFVPSKEGWLMFAADYS 658

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I+ ++  I+AF    DI+  T    F+   ++V+   R   K +   + Y 
Sbjct: 659 QIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYG 718

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477
               G ++            ++++  + K   T+ +                        
Sbjct: 719 ISDYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPD 778

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             S +  ++      A+   + G+A +++KKA 
Sbjct: 779 ITSRNFNIKSFAERTAMNTPIQGSAADIIKKAM 811


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 84/513 (16%), Positives = 165/513 (32%), Gaps = 77/513 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            ++   L DE +     +    R +     LGI      +    +LA       + +N  
Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTQGLDY--DMLLASYL---INNENNS 417

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172
             L    HL      K  +  + KG  +  P D     NH+ +     E  K ++    +
Sbjct: 418 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLK 477

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++       E     +   +   G +++   +++LQ   A + K+L++ I        
Sbjct: 478 EHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKF 537

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF   G+ ++  ++    T   +L    +       IL+    +    
Sbjct: 538 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKMQSPIVSEILDYRQIAKIQS 596

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  DGR+         + TGR S      QN+P +                
Sbjct: 597 TYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 640

Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         +R   +    +G      D + +E RVLA ++G+    +AF  G D
Sbjct: 641 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 690

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+  T  K F+    D+V+   R   K +   + Y     G +K            +  +
Sbjct: 691 IHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNY 750

Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501
            +       + D    E+                         ++      A+   + G+
Sbjct: 751 FEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGS 810

Query: 502 ACELVKKAWRA----------KHQGVLQLWKDL 524
           A +++K A             K + V+Q+  +L
Sbjct: 811 AADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843



 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +   +M   
Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 866

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 867 VK--LDVPLIADSGWGHNWY 884


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/537 (17%), Positives = 181/537 (33%), Gaps = 79/537 (14%)

Query: 45   WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN 103
            W+    +    +LL YL D     +   ++ ER+L      ID         +  +A   
Sbjct: 517  WEL-SGTVRDVNLLDYLADPDASRLKFAAVTERLL---GWSIDEKPSDIGKISEQMAFDL 572

Query: 104  GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            G  +    A  A   +   +K   G   +    +  ++   Y  +  + +          
Sbjct: 573  GWGNVTDAAGAAAVAASTGSKDISGGIPLPSLPETLVNQAKYALSLLDML-------PIL 625

Query: 164  KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               VE     ++R+  L D E  L  L + + D G  +D  L+ +  + ++ E K+ +  
Sbjct: 626  TEQVE-----YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAA 680

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +     +  S     L+  LF   G+     ++    +         L       +  
Sbjct: 681  AFEAIGREVNLS-SPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQAL 739

Query: 284  SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                   KL      L + ++SDGR+  T     A+ TGR S      QN+P +      
Sbjct: 740  LYFRDRSKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDD--- 795

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA      L+ AD + IE R++A ++G++  
Sbjct: 796  ---------------------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGL 834

Query: 399  IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            I AF +GED++ +  A  F    + V+  QR   K     L Y     G A   +     
Sbjct: 835  IAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGE 894

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHL------WMQDQY---------------PEFA 493
                ++ +     +   + +   +E+  +      W + +Y                  A
Sbjct: 895  AKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAA 954

Query: 494  VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544
            +   + G+A +L+K+A       +       ++   + +     V  G   + RRV 
Sbjct: 955  LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVV 1011


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 146/408 (35%), Gaps = 78/408 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  +  +   +   G  +DL ++ +LQ     + +   +    +    I +     
Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAADAAYGVIGKQI-NLGSPK 559

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+     ++                  H  +  L     + RL  +    
Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L +AV++DGR+  T     A+ TGR S      QN+P +                
Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     AS  +R   +  +G  +L+ AD + IE R++A ++G++  I+AF  GED+
Sbjct: 658 ---------DASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++AF  PID+V+ E R   K M   L Y     G ++  K         +  +  
Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768

Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  +                         + +S +  +++     A+   + G+A 
Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           +++K A               + +LQ+  +L    A   +E      R
Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 126/406 (31%), Gaps = 68/406 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  ++   + ++ E      + L E+I ++      +      L
Sbjct: 477 DIELPLANVLAKMEIAGITVNKTALQEMAEQNKAVIESLTEEIYEMAGEEF-NINSPKQL 535

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296
              LF    + L    +       +   + +LA    +         I KL +     L 
Sbjct: 536 GSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQISKLQSTYVIGLQ 595

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + + SDG++         ++TGR S      QN+P                         
Sbjct: 596 DYIMSDGKIHTRY-IQDLTQTGRLSSSDPNLQNIP------------------------V 630

Query: 357 LGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     L+ +D + IE RVLA I+G++  I AF    DI+ +T  +
Sbjct: 631 RLEQGRLIRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMR 690

Query: 416 AFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            F    ++ V+   R   K +   + Y     G +             ++ + +      
Sbjct: 691 VFGIEKEEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLGITRKKAKDYIETYFERYPGIK 750

Query: 471 TFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + +                          S +  ++      A+   + G+A +++K A
Sbjct: 751 EYMETVVRDARDTGYVETLFNRRRELPDINSRNFNIRSFAERTAINSPIQGSAADILKIA 810

Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
                +           +LQ+  ++         E      ++   
Sbjct: 811 MINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIKALVKKTME 856


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 91/517 (17%), Positives = 178/517 (34%), Gaps = 81/517 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---- 112
           L++++ +  V  +++N       FK  L +    K      ++A       +  +     
Sbjct: 403 LIKFIAELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVFIPI 455

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               N      K   GKA I     G              +  +        +      E
Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGL-GILAIYDEINHILHK-----EE 509

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L+  LI     E  L  +   +  +G +ID+         + +E  K+++ I +      
Sbjct: 510 LYDILI---QNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAGEEF 566

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGSA 288
            +      L   LF+   +     ++ G    ++   ++         L+L+    +   
Sbjct: 567 -NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 625

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++TL   V S+ R+  +    G + TGR S      QN+P +               
Sbjct: 626 TTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD------------ 672

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D+
Sbjct: 673 ------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDL 720

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  + FN    D V++EQR I K++  ++ Y     G AK  K         ++++ 
Sbjct: 721 HDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYF 780

Query: 464 QNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +     +TFE                          +S +  ++ Q    AV   + GTA
Sbjct: 781 EQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTA 840

Query: 503 CELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534
            E++KK         K +  + L   + +     V+E
Sbjct: 841 AEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEE 877



 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    +    ++  N ++Q  + ++L + M         K+   ++L V
Sbjct: 808 GRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQV 867

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  ++       +   +M
Sbjct: 868 HDELIFEVEESSVEKYSEILADIM 891


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 140/448 (31%), Gaps = 79/448 (17%)

Query: 130 ALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRDVEAT--RELFKRLIP------ 179
           +L A        +  +D  RA     +      +    D +      L   L P      
Sbjct: 439 SLAAYLLNPEERNYAWDRLRAMLFAGEELPDAVDEVHPDAQGMAALALMHVLGPRIKSAG 498

Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                ++ E  L  +   +   G  IDLD        + +   +L   I +       + 
Sbjct: 499 LDELTANLEIPLIPVLADMEKAGITIDLDAFADFLTEVNERINELTRVIHERAGEPF-NI 557

Query: 236 RQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           R +  +   LF   G+     +      T  S+L   +        IL            
Sbjct: 558 RSSQQMATVLFDSLGLKPGGKTPKGALSTANSVLEKLSGQHEIITDILEYRKMEKLRSTY 617

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L + V+++GR+        A+ TGR S      QN+P +                  
Sbjct: 618 LEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNLQNIPIR------------------ 658

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                 G     +R+C  A  G +L  AD + +E RVLA  +G+   + AF + EDI+  
Sbjct: 659 ------GDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHDEDIHSR 712

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVK 467
           T A  F+     V+ ++R   K +   L Y  G +          +     + ++ + + 
Sbjct: 713 TAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQKLSRELGIKINEAKEFIAKYFEKLD 772

Query: 468 STSTFEDWEQAESHHLWMQ---------------------DQYPEFAVKDKLIGTACELV 506
               F D    +                             Q    A+   + G+A +++
Sbjct: 773 VLKEFYDSVVEQGREKGYVTTLSGRRRLLPELHSTSPQILSQARRQAINTVIQGSAADII 832

Query: 507 KKAWRAKHQG----------VLQLWKDL 524
           K A                 +LQ+  +L
Sbjct: 833 KMAMIKVADNAEIKHLGGRLILQIHDEL 860



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
              ++Q  + DI+   M     N      G  ++L +HDE++ E P+    ++  +  L+
Sbjct: 820 INTVIQGSAADIIKMAMIKVADNAEIKHLGGRLILQIHDELLVEGPEE---NIEEIGKLL 876


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 84/518 (16%), Positives = 167/518 (32%), Gaps = 86/518 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSS 108
           S L + L D  V     N +F+    K+T      + I ++      +LA        +S
Sbjct: 363 SPLKEMLEDSAVQK---N-VFD---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNS 415

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L   +  +  K      L       +   P  D    NH+          K  + 
Sbjct: 416 NDLGELVQGYDYYDLK----TDLEVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL 471

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +  ++       E     +   +   G ++    + +L+   A   K+L+E I K  
Sbjct: 472 KQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEA 531

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF   G+ ++  ++     +++ +      + +  D++  R  S
Sbjct: 532 GEEF-NLNSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQIS 590

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
              +   +  L + +   DGR+         + TGR S      QN+P +          
Sbjct: 591 KIQST-YVKGLLDVIDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------- 639

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S     +   D + IE RVLA ++ +    +AF
Sbjct: 640 ---------------EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAF 684

Query: 403 ANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
             G DI+  T  K F+   +D+V+  QR   K +   + Y     G +K           
Sbjct: 685 KTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKE 744

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            + ++         + DW                         + +  ++      A+  
Sbjct: 745 FIDEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINS 804

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            + G+A +++K A             K + V+Q+  +L
Sbjct: 805 PIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDEL 842



 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    K   + G     V+ VHDE++ + P     ++  +  S+M   
Sbjct: 806 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 865

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 866 VK--LDVPLVAD 875


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 90/520 (17%), Positives = 172/520 (33%), Gaps = 95/520 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +    +  P K++  T +LA        +    LAL   ++ T   E 
Sbjct: 381 IGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRLFDYKTLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLS--- 181
                   K   +    +  +A           Y   D   T   +    K L P     
Sbjct: 440 VV------KKGENFASVELEKA---------CNYAAEDAYITLRFYLYFLKNLEPNLLKL 484

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E +   + + +   G +++   +  L +   +E K L E+I  L D    +     
Sbjct: 485 GFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDDKF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            +   LF    +     ++           +  L     +     +   + KL       
Sbjct: 544 QVGDVLFEKLNLPSAKKTK--TGYSTDEKVLENLVDKHPVVSKILAYRELAKLYSTYCEP 601

Query: 295 LSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           L +    D   R+  +    G + TGR S      QN+P                     
Sbjct: 602 LLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAH------------------- 641

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                G  +   +SC IA +G   +  D + IE R+LA  + ++  ++AF N EDI+  T
Sbjct: 642 -----GQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDEDIHART 696

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468
               F     + + E R++ K +   L Y  G    ++  K  AS     ++++  N  S
Sbjct: 697 AIMIFG----ENNYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKEYIEKYFANFTS 752

Query: 469 TSTFEDWEQAESHHLWM--------------------QDQYPEFAVKDKLIGTACELVKK 508
             ++ +  + E+                            Y   ++   L G+A +++K 
Sbjct: 753 IKSYFERVKNEAKINGYISTLSGRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKL 812

Query: 509 AWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           A    ++        +LQ+  +L       + E     AR
Sbjct: 813 AMLELYKELDADKRLILQIHDELIFEVKDELCEKFEKRAR 852



 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631
           G   Y + A ++ M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE
Sbjct: 775 GRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDE 834

Query: 632 IVSETPDTPYFSVGTLCS 649
           ++ E           LC 
Sbjct: 835 LIFEVK-------DELCE 845


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 181/522 (34%), Gaps = 99/522 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +    +  P K++  T +LA        +    LAL   ++ T   E 
Sbjct: 381 IGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRLFDYKTLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLS--- 181
                   K   +    +  +A           Y   D   T   +    K L P     
Sbjct: 440 VV------KKGENFASVELEKA---------CNYAAEDAYITLRFYLYFLKNLEPNLLKL 484

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E +   + + +   G +++   +  L +   +E K L E+I  L D    +     
Sbjct: 485 GFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDDKF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290
            +   LF    +     ++         L+S++  H  ++++     L +L S+    +L
Sbjct: 544 QVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYRELAKLYSTYCEPLL 603

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL         + R+  +    G + TGR S      QN+P                   
Sbjct: 604 KL----ALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAH----------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  +   +SC IA +G   +  D + IE R+LA  + ++  ++AF N EDI+ 
Sbjct: 642 -------GQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDEDIHA 694

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T    F     + + E R++ K +   L Y  G    ++  K  AS     ++++  N 
Sbjct: 695 RTAIMIFG----ENNYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKTYIEKYFANF 750

Query: 467 KSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            S  +F                    + +    +        Y   ++   L G+A +++
Sbjct: 751 TSIKSFFEKVKNDAKINGFISTLSGRKRYFDFANAKPMQVAMYERESINSILQGSAADII 810

Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541
           K A    ++        +LQ+  +L       + E     AR
Sbjct: 811 KLAMLELYKELDADKRLILQIHDELIFEVKDELCEKFEKRAR 852



 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631
           G   Y + A ++ M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE
Sbjct: 775 GRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDE 834

Query: 632 IVSETPDTPYFSVGTLCS 649
           ++ E           LC 
Sbjct: 835 LIFEVK-------DELCE 845


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 128/367 (34%), Gaps = 54/367 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            SD +  +  +   +   G ++D + + +L      E  KL+E+I  L+     +     
Sbjct: 473 YSDIDLPICFILDKMEKVGIKVDANYLKQLSAEFGAEILKLEEEIFALSGTKF-NIGSPK 531

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLN 293
            L   LF    +    +S            + +L++       L+L     +       +
Sbjct: 532 QLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLSEHGYNIANLLLRWRQLTKLKNTYTD 591

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +  +   T     ++ TGR S      QN+P +                    
Sbjct: 592 SLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 633 -----SEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN    +++ E R   K +   + Y     G AK            ++++    K  
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGKASEYIKKYFAEYKGV 747

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A +                   H   ++      A+   + GT  +++K A 
Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 807

Query: 511 RAKHQGV 517
               Q +
Sbjct: 808 INLDQEI 814


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 174/534 (32%), Gaps = 75/534 (14%)

Query: 19  VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
              +   E    + L   A        +         + L  +  D+      + S  + 
Sbjct: 317 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 375

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136
              + + GID+         VLA       +          S     ME G    A  F 
Sbjct: 376 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 423

Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           K        + S P D  +   + A +L        V+   +  K +      E+ L  +
Sbjct: 424 KEWGAGSLPVQSLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 481

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  +D   +  L   + +E ++  ++I  L      + +    L   L+   G
Sbjct: 482 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLG 540

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
           I+ VD ++ T   +L            IL   A+       +  L + +++   R+  T 
Sbjct: 541 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 600

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368
              G + TGR S      QN+P +                              +R    
Sbjct: 601 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 635

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +  +    + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+Q
Sbjct: 636 VKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQ 695

Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           R   K +   L Y     G +K+ K   S     +  +       + F      ++    
Sbjct: 696 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 755

Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                +      AV  ++ G+A EL+K A       + 
Sbjct: 756 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 809


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 174/534 (32%), Gaps = 75/534 (14%)

Query: 19  VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
              +   E    + L   A        +         + L  +  D+      + S  + 
Sbjct: 315 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 373

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136
              + + GID+         VLA       +          S     ME G    A  F 
Sbjct: 374 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 421

Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           K        + S P D  +   + A +L        V+   +  K +      E+ L  +
Sbjct: 422 KEWGAGSLPVQSLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 479

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  +D   +  L   + +E ++  ++I  L      + +    L   L+   G
Sbjct: 480 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLG 538

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
           I+ VD ++ T   +L            IL   A+       +  L + +++   R+  T 
Sbjct: 539 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 598

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368
              G + TGR S      QN+P +                              +R    
Sbjct: 599 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 633

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +  +    + AD + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+Q
Sbjct: 634 VKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQ 693

Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           R   K +   L Y     G +K+ K   S     +  +       + F      ++    
Sbjct: 694 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 753

Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                +      AV  ++ G+A EL+K A       + 
Sbjct: 754 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 807


>gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
          Length = 887

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 168/495 (33%), Gaps = 70/495 (14%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++ + L +  +     N+    +   +  + +      ++  S L  TN   + L     
Sbjct: 365 EIKELLENPKIKKDTFNAKAHYVALHRQGIELHGNGFDFLLVSYLLNTNDNSNDLGQLAH 424

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173
             N+   +   EE       + KG     P D +    H+    +  E  K  +  T +L
Sbjct: 425 EHNY-YQVQSDEEV------YGKGKSRHLPDDRSVFFTHLVQKGMAIEQLKHPL--TDQL 475

Query: 174 FK-RLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            +    PL +D ER L  +   +   G  +D   + ++   + +   +L++ I       
Sbjct: 476 HENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSKLKERLAELEQAIYNEAGEE 535

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287
             +   T  L   LF    + ++  ++     +++ +        +  ++++ R  S   
Sbjct: 536 F-NINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEKLQGRAPIIDNILVYRQISKIQ 594

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +      L    SSD ++         ++TGR S      QN+P                
Sbjct: 595 STYITGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVDPNLQNIP---------------- 637

Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R     S  G K+  +D + +E RVLA + G+    + F +G+
Sbjct: 638 --------VRLEEGRKIRRAFKPSQPGWKIFSSDYSQVELRVLAHVTGDRNLQQDFIDGK 689

Query: 407 DIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           DI+ +T  + F+  P +KV+   R   K +   + Y     G ++            +Q 
Sbjct: 690 DIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYGISDYGLSQNIHVTRKQAHEFIQS 749

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           + +       + +                       +  S +   +      A+   + G
Sbjct: 750 YFKEFPGVQEYIENIVKLAKKQGYVETLTHRRRYLPEINSKNFSRRSFAERTAMNTPIQG 809

Query: 501 TACELVKKAWRAKHQ 515
           +A +++K A    ++
Sbjct: 810 SAADIIKIAMINMNE 824



 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M N      K G    ++L +HDE++ E P+     +  L 
Sbjct: 807 IQGSAADIIKIAMINMNEQLQKAGLKAKMLLQIHDELIFEAPEEEIDQLRELV 859


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 137/405 (33%), Gaps = 64/405 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            S+ +  +  +   +   G ++D + + +L      E  KL+E+I  L+     +     
Sbjct: 520 YSNIDLPICFILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFALSGTKF-NIGSPK 578

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293
            L   LF    +     S            + +L++      DL+L     +       +
Sbjct: 579 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 638

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +      T     ++ TGR S      QN+P +                    
Sbjct: 639 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 679

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 680 -----SEGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 734

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN    +++ E R   K +   + Y     G AK            ++++    K  
Sbjct: 735 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGEASEYIKKYFAEYKGV 794

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A +                   H   ++      A+   + GT  +++K A 
Sbjct: 795 QEYMEQTKAFASSNGYVINFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 854

Query: 511 RAKHQGV----------LQLWKDLTEGFACVVQEGGSISARRVAN 545
               Q +          LQ+  +L         E  +   +++  
Sbjct: 855 INLDQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIME 899



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           +Q  + DI+   M N  +          +VL +HDE++ E P+     V   +  +M
Sbjct: 842 IQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIM 898


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 84/518 (16%), Positives = 167/518 (32%), Gaps = 86/518 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSS 108
           S L + L D  V     N +F+    K+T      + I ++      +LA        +S
Sbjct: 363 SPLKEMLEDSAVQK---N-VFD---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNS 415

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L   +  +  K      L       +   P  D    NH+          K  + 
Sbjct: 416 NDLGELVQGYDYYDLK----TDLEVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL 471

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +  ++       E     +   +   G ++    + +L+   A   K+L+E I K  
Sbjct: 472 KQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEA 531

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF   G+ ++  ++     +++ +      + +  D++  R  S
Sbjct: 532 GEEF-NLNSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQIS 590

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
              +   +  L + +   DGR+         + TGR S      QN+P +          
Sbjct: 591 KIQST-YVKGLLDVIDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------- 639

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S     +   D + IE RVLA ++ +    +AF
Sbjct: 640 ---------------EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAF 684

Query: 403 ANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
             G DI+  T  K F+   +D+V+  QR   K +   + Y     G +K           
Sbjct: 685 KTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKE 744

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            + ++         + DW                         + +  ++      A+  
Sbjct: 745 FINEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINS 804

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            + G+A +++K A             K + V+Q+  +L
Sbjct: 805 PIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDEL 842



 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    K   + G     V+ VHDE++ + P     ++  +  S+M   
Sbjct: 806 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 865

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 866 VK--LDVPLVAD 875


>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262]
 gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262]
          Length = 875

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   +   I    K      +LA     PS   +   ++       
Sbjct: 363 SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHD-- 417

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 418 -YTEVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDDLEENEQLALMEDL 476

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D   +  ++  +A   K L+E I  L      +      L +
Sbjct: 477 ELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 535

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF    +  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 536 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 631 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              D+V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 691 VEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 750

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                  +  S +  ++      A+   + G+A +++KKA 
Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807



 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M        +      ++L VHDE++ E P+     +  + 
Sbjct: 795 IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 89/514 (17%), Positives = 165/514 (32%), Gaps = 95/514 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +    + +  +++  T +LA        +    LAL    + T   E 
Sbjct: 381 IGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLSDGE 184
                   K   +    +  +A          +Y   D   T   +    K L P     
Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEPHLLDL 484

Query: 185 RDLWLLD-----QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
              +  D       + + G ++D   +  L +    E K L E+I  L +    +     
Sbjct: 485 AKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRF-NLNSPK 543

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            +   LF    + L    +G          + +L     +         + KL       
Sbjct: 544 QVGDILFEK--LKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAKLYSTYCEP 601

Query: 295 LSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           L +    D   R+  +    G + TGR S      QN+P                     
Sbjct: 602 LLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------------------- 641

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                G  +   +SC IA  G   +  D + IE R+LA  + ++  + AF N EDI+  T
Sbjct: 642 -----GQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHART 696

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKS 468
               F     + + E R+I K +   L Y  G K      K  A+     ++++ +N  S
Sbjct: 697 AIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTS 752

Query: 469 TSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             ++                    + +   E+        Y   ++   L G+A +++K 
Sbjct: 753 IKSYFEKVKNEAKANGFISTLSGRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKF 812

Query: 509 AW-------RAKHQGVLQLWKDLTEGFACVVQEG 535
           A            + +LQ+  +L       + E 
Sbjct: 813 AMLEIAKILNQDKRLILQIHDELIFEVKDELCEN 846



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631
           G   Y +   ++ M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE
Sbjct: 775 GRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDE 834

Query: 632 IVSETPDTPYFS-VGTLCSLM 651
           ++ E  D    + V     +M
Sbjct: 835 LIFEVKDELCENFVKKTSDIM 855


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 81/500 (16%), Positives = 160/500 (32%), Gaps = 67/500 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            ++   L DE +     +    R +     LGI      +    +LA       + +N  
Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 417

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172
             L    HL      K  +  + KG  +  P D     NH+ +     E  K+ +    +
Sbjct: 418 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLK 477

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++       E     +   +   G +++   +++LQ   A + KKL++ I        
Sbjct: 478 DHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQAGEKF 537

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF   G+ ++  ++    T   +L            IL+    +    
Sbjct: 538 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQS 596

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  DGR+         + TGR S      QN+P +                
Sbjct: 597 TYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 640

Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         +R   +    +G      D + +E RVLA ++G+    +AF  G D
Sbjct: 641 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 690

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+  T  K F+    D+V+   R   K +   + Y     G +K            +  +
Sbjct: 691 IHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNY 750

Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501
            +       + +    E+                         ++      A+   + G+
Sbjct: 751 FEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGS 810

Query: 502 ACELVKKAWRAKHQGVLQLW 521
           A +++K A     + + +L 
Sbjct: 811 AADIIKIAMINMQKKLDELH 830



 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +   +M   
Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSA 866

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 867 VK--LDVPLIADSGWGHNWY 884


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 93/537 (17%), Positives = 181/537 (33%), Gaps = 79/537 (14%)

Query: 45   WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN 103
            W+    +    +LL YL D     +   ++ ER+L      ID         +  +A   
Sbjct: 517  WEL-SGTVQDVNLLDYLADPDASRLKFAAVTERLL---GWSIDEKPSDIGKISEQMAFDL 572

Query: 104  GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            G  +    A  A   +   +K   G   +    +  ++   Y  +  + +          
Sbjct: 573  GWGNVTDAAGAAAVTASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLP--------- 623

Query: 164  KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               +   +  ++R+  L D E  L  L + + D G  +D  L+ +  + ++ E K+ +  
Sbjct: 624  ---ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAA 680

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +     +  S     L+  LF   G+     ++    +         L       +  
Sbjct: 681  AFEAIGREVNLS-SPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQAL 739

Query: 284  SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                   KL      L + ++SDGR+  T     A+ TGR S      QN+P +      
Sbjct: 740  LYFRDRSKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDD--- 795

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA      L+ AD + IE R++A ++G++  
Sbjct: 796  ---------------------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGL 834

Query: 399  IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            I AF +GED++ +  A  F    + V+  QR   K     L Y     G A   +     
Sbjct: 835  IAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGE 894

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHL------WMQDQY---------------PEFA 493
                ++ +     +   + +   +E+  +      W + +Y                  A
Sbjct: 895  AKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAA 954

Query: 494  VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544
            +   + G+A +L+K+A       +       ++   + +     V  G   + RRV 
Sbjct: 955  LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVV 1011


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 168/529 (31%), Gaps = 86/529 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D       H +    +      G           + LA     P   S     LAL +
Sbjct: 401 LADPGPPKALHEAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRY 457

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                   E             D       +   ++A  +       D E  R     L 
Sbjct: 458 LR-RELRAENPQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL- 515

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            LS  E  +  +   + + G  +DLDL+ +LQ   A + +   E    +    I +    
Sbjct: 516 -LSGMELPVQRVLAGMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSP 573

Query: 239 YALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSA 288
             L+  LF    +     ++                  H  +  L       RL  +   
Sbjct: 574 KQLQAVLFDELQMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT--- 630

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++ L  +V+SDGR+  T     A+ TGR S      QN+P +  +            
Sbjct: 631 ---VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------ 674

Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   +  +G  +L+ AD + IE R++A ++ +   I+AF  GED
Sbjct: 675 ------------GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGED 722

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++    ++AF  PI++V+ E R   K M   L Y     G ++  K         +  + 
Sbjct: 723 LHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYF 782

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   +      ++                      +  +++     A+   + G+A
Sbjct: 783 ARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSA 842

Query: 503 CELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541
            +++K A     + +          LQ+  +L    A   +E     AR
Sbjct: 843 ADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALAR 891



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    K     G    I+L VHDE++ E        +  L  
Sbjct: 838 IQGSAADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALAR 891


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/493 (17%), Positives = 160/493 (32%), Gaps = 87/493 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNACL 114
           +   L D+++  + ++      L K         K          A + GL         
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDIKAIEDLELMQYALSAGLSQ------- 426

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             N  + + K    + +I    K  I+    Y  T       W+L           T  L
Sbjct: 427 -KNLFKEVLKETWIENIIIESAKIVINFITLYKQT------IWELKDN-------KTFRL 472

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +      S+ +  +  +   +   G  +D + + +L      E  KL+E+I  L+     
Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287
           +      L   LF    +     S            + +L++      DL+L     +  
Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                ++L + + +      T     ++ TGR S      QN+P +              
Sbjct: 586 KNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +D
Sbjct: 633 -----------SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T  + FN    +++ E R   K +   + Y     G AK            ++++ 
Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTHGEASAYIKKYF 741

Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504
              K    + +  +A +                   H   ++      A+   + GT  +
Sbjct: 742 AEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNAD 801

Query: 505 LVKKAWRAKHQGV 517
           ++K A     Q +
Sbjct: 802 IIKIAMINLDQEI 814


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/502 (14%), Positives = 160/502 (31%), Gaps = 72/502 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVL-ARTNGLPSSLK 110
             +   L   TV     ++       +  +G+    I  +      +L +      ++  
Sbjct: 362 KQVKAILESSTVQKNVFDAK------RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +             ++  + +  +  K  ID  P      +H+       +    D+   
Sbjct: 416 DVGTVAKL-HGFANIKTDEEVYGKGAKKKID--PEVPEFFDHIVHKAKAIDQLHNDMFKA 472

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +   +     D E  +  +   +   G +++ + + ++     +   ++++ I +    
Sbjct: 473 LDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAGE 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF    + ++  ++    + +    + +LA D  + +   +   I 
Sbjct: 533 EF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLNYRQIS 589

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L + +  +     T      ++TGR S      QN+P +            
Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS----------- 638

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   I S    ++  +D + IE RVLA I G+    +AF  
Sbjct: 639 -------------EEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           GEDI+ TT  + F     D V+ E R   K +   + Y     G A             +
Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQFI 745

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           Q++ +       + +                          S +  ++      A+   +
Sbjct: 746 QRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNTPI 805

Query: 499 IGTACELVKKAWRAKHQGVLQL 520
            G+A +++K A     + +  L
Sbjct: 806 QGSAADIIKIAMINMDEALKPL 827


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 139/423 (32%), Gaps = 65/423 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L   +D E  L  +   + D G  +D   + +  +       + +E    L      +
Sbjct: 480 ESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLN 539

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK--- 291
                 L++ LF    +     ++    +            D    +   +     K   
Sbjct: 540 LSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKS 599

Query: 292 -LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L  L  +V  DGR+  T +    + TGR S      QN+P +                 
Sbjct: 600 TLEGLIRSVGGDGRIHTTFK-QTVASTGRLSSTDPNLQNIPVRT---------------- 642

Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                    A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+ +GED++
Sbjct: 643 --------DAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               +K F+  ID+V+ E R   K M   L Y     G A             +  + + 
Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYGLAAQLDIPQGEAKSIMDSYFER 754

Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504
                 +      E+                      +   ++     A+   + GTA +
Sbjct: 755 FGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAAD 814

Query: 505 LVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           ++K A    ++ +     ++   + +     V  G       +  V R+V       + +
Sbjct: 815 IIKVAMVRVNRRLDSLKSRVLLQVHDELVLEVAPG------ELEEVSRIVSEEMDGAISL 868

Query: 561 VLP 563
            +P
Sbjct: 869 RVP 871



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 90/276 (32%), Gaps = 25/276 (9%)

Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  I++      I+ T       T   +   P  +    +   GK +  A     G +  
Sbjct: 602 EGLIRSVGGDGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETL 661

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++++  +   +     + ++  E  H ++  +  +  + +        +   
Sbjct: 662 LT-ADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAM 720

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           ++             L+        +     A+ + +         K  +  V+  +R+ 
Sbjct: 721 SYGLA--------YGLSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKD 772

Query: 569 VYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----GY 622
            Y+    G   YL   TS     R    +   N  +Q  + DI+   M    +       
Sbjct: 773 GYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVNRRLDSLKS 832

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
            ++L VHDE+V E        +  +  ++++    A
Sbjct: 833 RVLLQVHDELVLEV---APGELEEVSRIVSEEMDGA 865


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 92/527 (17%), Positives = 168/527 (31%), Gaps = 79/527 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A        +         + L  +  D T     + +  +    K   GID
Sbjct: 324 PSLRLHGVALSGGDEVFYIEISGDQEIALLKAFFADATTKFFGYRTKRDNHALKNH-GID 382

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYD 146
           +         VLA+      +  +    L  S H+          A F K     S P  
Sbjct: 383 VHV---TADLVLAQHLVNGGAKISFQTLLVESGHIQ-------EAAFFAKEWGASSLPVQ 432

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTIND 196
               N  Q + +F             +   L    +           E+ L  +   +  
Sbjct: 433 NLPQNPAQYFGIFVSRLPS-------IKNYLFEKLEEKGLKSIFKNVEQPLEEILFAMEC 485

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +D + +L L   +++E +   ++I  L      + +    L   L+   GI  VD 
Sbjct: 486 AGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEF-NIKSPKQLSDVLYHRLGIKPVDK 544

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGAS 315
           ++ T   +L     +      IL   A+       +  L   +     R+  T    G +
Sbjct: 545 AKSTKAEVLEALEGSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVG-T 603

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P +    + L +  +                              
Sbjct: 604 VTGRLSCQDPNLQNIPVRYERGKSLREAFRFTK-----------------------ENDY 640

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + +E R LA ++ ++   +AF +GEDI+  T ++ FN P+D+V++ QR   K +
Sbjct: 641 FLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAV 700

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------- 484
              L Y     G +K  K   +     +  +       S F      ++           
Sbjct: 701 NFGLAYGQQAYGLSKNLKISVNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLG 760

Query: 485 -------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                         +      AV  ++ G+A EL+K A     + ++
Sbjct: 761 RERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISRELV 807


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/502 (14%), Positives = 160/502 (31%), Gaps = 72/502 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVL-ARTNGLPSSLK 110
             +   L   TV     ++       +  +G+    I  +      +L +      ++  
Sbjct: 362 KQVKAVLESSTVQKNVFDAK------RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +             ++  + +  +  K  ID  P      +H+       +    D+   
Sbjct: 416 DVGTVAKL-HGFANIKTDEEVYGKGAKKKID--PEVPEFFDHIVHKAKAIDQLHNDMFKA 472

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +   +     D E  +  +   +   G +++ + + ++     +   ++++ I +    
Sbjct: 473 LDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAGE 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L   LF    + ++  ++    + +    + +LA D  + +   +   I 
Sbjct: 533 EF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLNYRQIS 589

Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           KL     + L + +  +     T      ++TGR S      QN+P +            
Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS----------- 638

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   I S    ++  +D + IE RVLA I G+    +AF  
Sbjct: 639 -------------EEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           GEDI+ TT  + F     D V+ E R   K +   + Y     G A             +
Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQFI 745

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
           Q++ +       + +                          S +  ++      A+   +
Sbjct: 746 QRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNTPI 805

Query: 499 IGTACELVKKAWRAKHQGVLQL 520
            G+A +++K A     + +  L
Sbjct: 806 QGSAADIIKIAMINMDEALKPL 827


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/587 (15%), Positives = 179/587 (30%), Gaps = 110/587 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYA-----EQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDL 57
           +  D ET          +  ++     E A     A+++   P ++  D    +      
Sbjct: 319 IAFDTETT-DIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDFAAWAV----- 372

Query: 58  LQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                   +     V  N  ++  + K+ LG++ P  ++  T VLA       ++    L
Sbjct: 373 ------GQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDAL 425

Query: 115 ALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           A   ++    K E+       F    +++                  +Y   D   T + 
Sbjct: 426 AKRLYNYDTIKFEDVVRRGETFASVPLENAA----------------KYAAEDAWITLKF 469

Query: 174 FKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +K  + L D          E    L    +   G  I+   +  L      + K L  +I
Sbjct: 470 YKSFLNLLDPALIELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEI 529

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +LT     +      L   LF    + +   ++    T +++L+      L    +L  
Sbjct: 530 YELTGENF-NINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEY 588

Query: 282 LASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                        L    + D   R+       G + TGR +      QN+P +      
Sbjct: 589 RELYKLQSTYCEPLLNLANKDENSRIYTNFVQTG-TSTGRLASKNPNLQNIPAR------ 641

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                             G  +  VR    A  G   V  D + IE R+LA  + ++  +
Sbjct: 642 ------------------GSLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALL 683

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           KAF N EDI+  T    F +       + RA+ K +   L Y  G    A       +  
Sbjct: 684 KAFENDEDIHARTAISIFGSA----DGQNRAVAKSINFGLIYGMGSSKLAGQVNISRAEA 739

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495
              ++++ +   +   F +  +  + +                          Y   AV 
Sbjct: 740 KEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRFFDFTNATPMQTAMYEREAVN 799

Query: 496 DKLIGTACELVKKAWRAKHQ---GVLQLWKDLTEGFACVVQEGGSIS 539
               G+A +++K A            ++   + +     V +  +  
Sbjct: 800 TIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEVADEHAAE 846



 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---YDIVLTVHDE 631
           G   + +   +  M+   Y  +    I Q  + DI+   M            ++L +HDE
Sbjct: 775 GRKRFFDFTNATPMQTAMYEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDE 834

Query: 632 IVSETPDTPYFSVGTLCS-LM 651
           ++ E  D      G     +M
Sbjct: 835 LIFEVADEHAAEFGEAAQKIM 855


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 139/423 (32%), Gaps = 65/423 (15%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L   +D E  L  +   + D G  +D   + +  +       + +E    L      +
Sbjct: 480 ESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLN 539

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK--- 291
                 L++ LF    +     ++    +            D    +   +     K   
Sbjct: 540 LSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKS 599

Query: 292 -LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L  L  +V  DGR+  T +    + TGR S      QN+P +                 
Sbjct: 600 TLEGLIRSVGGDGRIHTTFK-QTVASTGRLSSTDPNLQNIPVRT---------------- 642

Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                    A   +RS  +   G + L+ AD + IE RV+A ++ +   I+A+ +GED++
Sbjct: 643 --------DAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               +K F+  ID+V+ E R   K M   L Y     G A             +  + + 
Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYGLAAQLDIPQGEAKSIMDSYFER 754

Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504
                 +      E+                      +   ++     A+   + GTA +
Sbjct: 755 FGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAAD 814

Query: 505 LVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           ++K A    ++ +     ++   + +     V  G       +  V R+V       + +
Sbjct: 815 IIKVAMVRVNRRLDSLKSRVLLQVHDELVLEVAPG------ELEEVSRIVSEEMDGAISL 868

Query: 561 VLP 563
            +P
Sbjct: 869 RVP 871



 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%)

Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  I++      I+ T       T   +   P  +    +   GK +  A     G +  
Sbjct: 602 EGLIRSVGGDGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETL 661

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++++  +   +     + ++  E  H ++  +  +  + +        +   
Sbjct: 662 LT-ADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAM 720

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           ++             L+        +     A+ + +         K  +  V+  +R+ 
Sbjct: 721 SYGLA--------YGLSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKD 772

Query: 569 VYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----GY 622
            Y+    G   YL   TS     R    +   N  +Q  + DI+   M    +       
Sbjct: 773 GYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVNRRLDSLKS 832

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL--PL 663
            ++L VHDE+V E        +  +  ++++    A  L  PL
Sbjct: 833 RVLLQVHDELVLEV---APGELEEVSRIVSEEMDGAISLRVPL 872


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/507 (15%), Positives = 167/507 (32%), Gaps = 81/507 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            ++   L DE +     +    R +      +DI +       +LA       + +N   
Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAH-RLDIHTHGLDYDMLLASYL---INNENNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD--------CTRANHVQAWQLFGEYCKRD 166
            L    HL      K  +  + KG  +  P D         ++ N +++ +       +D
Sbjct: 419 DLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKD 478

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                +LF+ +      E     +   +   G +++   +++LQ   A + K+L++ I  
Sbjct: 479 -HEQDDLFETI------EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYS 531

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282
                  +      L   LF   G+  +  ++     +++ +      + +  +++  R 
Sbjct: 532 QAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ 590

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +   +   +  L + + SDGR+         + TGR S      QN+P +         
Sbjct: 591 IAKIQST-YVKGLLDVIQSDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------- 640

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                +R   +    +G      D + +E RVLA ++G+    +
Sbjct: 641 ----------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQE 683

Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           AF  G DI+  T  K F+    D+V+   R   K +   + Y     G +K         
Sbjct: 684 AFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRA 743

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494
              +  + +       + D     +                         ++      A+
Sbjct: 744 QEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAI 803

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLW 521
              + G+A +++K A     + + +L 
Sbjct: 804 NSPIQGSAADIIKIAMINMQKKLDELH 830



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593
           IS +R          ++   +  +   + ++R   Y++       YL    ++    R++
Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
             +   N  +Q  + DI+   M N  K          IV+ VHDE++ + P     ++  
Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKK 857

Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673
           +   +M         +PL A+ G+    Y
Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
 gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
          Length = 881

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/597 (15%), Positives = 193/597 (32%), Gaps = 89/597 (14%)

Query: 28  AVITLCA--YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----- 80
             I + A  Y   D+ V  +  T++    S  +  L    V     +S  +  +F     
Sbjct: 324 FEIEMLADNYHIADQ-VGFFIGTKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRN 382

Query: 81  ---KKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIA 133
                 LG+ +P        +LA     P      L       ++   L + E+      
Sbjct: 383 IVAAHRLGLHLP--DIAFDVLLASYLINPDENSNDLGKIAEDHDY-HDLPRDEDV----- 434

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
            + KG+    P D                 + D+       ++    +D E  L  +   
Sbjct: 435 -YGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAE 493

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + +
Sbjct: 494 MEIQGITLNAQTLKNMGTEFSQSIKVLEEKIYG-EAGVKFNLNSPKQLGEVLFEKLNLPV 552

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGT 308
           +  ++    + +    + +L     + +         KLN+     L +A   D ++   
Sbjct: 553 IKKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPDHKIHTR 610

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 ++TGR S      QN+P ++                             +R   
Sbjct: 611 Y-LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAF 644

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426
           + S    ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ 
Sbjct: 645 VPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTP 704

Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------- 474
           + R   K     + Y     G A+            +  + +       + +        
Sbjct: 705 DMRRQAKATNFGIVYGISDYGLAQNIGISRKKAKAFIDGYFEQYPKVHDYMENMVKKARE 764

Query: 475 -------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----RAKHQGV 517
                          Q  S +  ++      A+   + G+A +++K A     +A  +  
Sbjct: 765 DGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAH 824

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           LQ    L      + +   +  A+    VP+++       V + + S     + D K
Sbjct: 825 LQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLVVPLKVESHYGPTWFDAK 881



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M    K          ++L VHDE++ E P      +G L   +M
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 857


>gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/500 (16%), Positives = 160/500 (32%), Gaps = 67/500 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            ++   L DE +     +    R +     LGI      +    +LA       + +N  
Sbjct: 128 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 180

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172
             L    HL      K  +  + KG  +  P D     NH+ +     E  K+ +    +
Sbjct: 181 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLK 240

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++       E     +   +   G +++   +++LQ   A + K+L++ I        
Sbjct: 241 DHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKF 300

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF   G+ ++  ++    T   +L            IL+    +    
Sbjct: 301 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTAVEVLDQLKTQSPIVSEILDYRQIAKIQS 359

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  DGR+         + TGR S      QN+P +                
Sbjct: 360 TYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 403

Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         +R   +    +G      D + +E RVLA ++G+    +AF  G D
Sbjct: 404 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 453

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+  T  K F+    D+V+   R   K +   + Y     G +K            +  +
Sbjct: 454 IHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNY 513

Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501
            +       + +    E+                         ++      A+   + G+
Sbjct: 514 FEQYPQIEDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGS 573

Query: 502 ACELVKKAWRAKHQGVLQLW 521
           A +++K A     + + +L 
Sbjct: 574 AADIIKIAMINMQKKLDELH 593



 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +   +M   
Sbjct: 570 IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSA 629

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 630 VK--LDVPLIADSGWGHNWY 647


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/507 (15%), Positives = 167/507 (32%), Gaps = 81/507 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            ++   L DE +     +    R +      +DI +       +LA       + +N   
Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAH-RLDIHTHGLDYDMLLASYL---INNENNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD--------CTRANHVQAWQLFGEYCKRD 166
            L    HL      K  +  + KG  +  P D         ++ N +++ +       +D
Sbjct: 419 DLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKD 478

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                +LF+ +      E     +   +   G +++   +++LQ   A + K+L++ I  
Sbjct: 479 -HEQDDLFETI------EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYS 531

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282
                  +      L   LF   G+  +  ++     +++ +      + +  +++  R 
Sbjct: 532 QAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ 590

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +   +   +  L + + SDGR+         + TGR S      QN+P +         
Sbjct: 591 IAKIQST-YVKGLLDVIQSDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------- 640

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                +R   +    +G      D + +E RVLA ++G+    +
Sbjct: 641 ----------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQE 683

Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           AF  G DI+  T  K F+    D+V+   R   K +   + Y     G +K         
Sbjct: 684 AFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRA 743

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494
              +  + +       + D     +                         ++      A+
Sbjct: 744 QEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAI 803

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLW 521
              + G+A +++K A     + + +L 
Sbjct: 804 NSPIQGSAADIIKIAMINMQKKLDELH 830



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593
           IS +R          ++   +  +   + ++R   Y++       YL    ++    R++
Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
             +   N  +Q  + DI+   M N  K          IV+ VHDE++ + P     ++  
Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKK 857

Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673
           +   +M         +PL A+ G+    Y
Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 91/552 (16%), Positives = 170/552 (30%), Gaps = 94/552 (17%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A  D      D  E       +L  +L D       H++           G  +  +
Sbjct: 366 LAIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAKPAWHALT---GRGLEVR 422

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPY 145
             +  + LA     P   S   A L + +           E G+ ++         S   
Sbjct: 423 GVVMDTALAAYLCHPDQRSYDLADLVVRYLHRELPRTDLDETGQGMLDLDADSGAKSAGA 482

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                  +    L  E   R  +A  E         D E  L      +   G   D++ 
Sbjct: 483 RAVAVVELAG-PLAEEVADRGAQALLE---------DVELPLLRTLAEMEHDGIGADVEY 532

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------- 258
           +  ++       ++      +     + +      L+  LF   G+     ++       
Sbjct: 533 LRGIEREFDAVVERAALGAYEAIGRQV-NLGSPKQLQEVLFDDLGMPKTRRTKTGYTTDA 591

Query: 259 GTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
             L  +     H  +  L       RL  +      +  L  +V+ DGR+  T Q   A+
Sbjct: 592 DALADLYVKTEHPFLEHLLAHREAIRLRQT------VEGLLRSVAPDGRIHTTFQQTIAA 645

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK- 374
            TGR S      QN+P +                              +R   +   G  
Sbjct: 646 -TGRLSSADPNLQNIPIRT------------------------EEGYRIREGFVVGEGYE 680

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE R++A ++G++  I+AF +GED++    ++ F  P D+V+   R+  K 
Sbjct: 681 TLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIKA 740

Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------- 481
           M   L Y     G +K      +     +  +         +     A++          
Sbjct: 741 MSYGLAYGLSAFGLSKQLSIDVAEARTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLM 800

Query: 482 ------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523
                       +   ++     A+   + G+A +L+K A    H+ +       +L   
Sbjct: 801 GRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADLIKVAMLGVHRQMGEAGMSSRLLLQ 860

Query: 524 LTEGFACVVQEG 535
           + +     V  G
Sbjct: 861 VHDELVLEVAPG 872



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHK 555
           ++ G   + V  A R+K + +          F    Q    +  AR + +         +
Sbjct: 721 RVFGVPTDEVTSAMRSKIKAMSYGLAYGLSAFGLSKQLSIDVAEARTLMDDYFDRFGGVR 780

Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +  V+  +R++ Y++   G   YL   TS   + R    ++  N  +Q  + D++   
Sbjct: 781 DYLSGVVAQARQVGYTETLMGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADLIKVA 840

Query: 614 MKNATK----NGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           M    +     G    ++L VHDE+V E       ++  L  + M   
Sbjct: 841 MLGVHRQMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAA 888


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 167/529 (31%), Gaps = 86/529 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D       H +    +      G           + LA     P   S     LAL +
Sbjct: 395 LADPGPPKALHEAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRY 451

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                   E             D       +   ++A  +       D E  R     L 
Sbjct: 452 LR-RELRAENPQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL- 509

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            LS  E  +  +   +   G  +DLDL+ +LQ   A + +   E    +    I +    
Sbjct: 510 -LSGMELPVQRVLAGMEKAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSP 567

Query: 239 YALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSA 288
             L+  LF    +     ++                  H  +  L       RL  +   
Sbjct: 568 KQLQAVLFDELQMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT--- 624

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++ L  +V+SDGR+  T     A+ TGR S      QN+P +  +            
Sbjct: 625 ---VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------ 668

Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   +  +G  +L+ AD + IE R++A ++ +   I+AF  GED
Sbjct: 669 ------------GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGED 716

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++    ++AF  PI++V+ E R   K M   L Y     G ++  K         +  + 
Sbjct: 717 LHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYF 776

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   +      ++                      +  +++     A+   + G+A
Sbjct: 777 ARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSA 836

Query: 503 CELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541
            +++K A     + +          LQ+  +L    A   +E     AR
Sbjct: 837 ADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    K     G    I+L VHDE++ E        +  L  
Sbjct: 832 IQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 141/408 (34%), Gaps = 73/408 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           +++ E  +  +  T+   G  +DLD + +L+     +     +D      G   +     
Sbjct: 501 MAELELPIVEVLATMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPK 560

Query: 240 ALRMYLFLITGIDL----------VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+               +   L     H  +  L +    ++L S+    
Sbjct: 561 QLQVVLFETLGLPKTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRST---- 616

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L +++  DGR+  T Q   A+ TGR S      QN+P +  S             
Sbjct: 617 --VQGLIKSIGDDGRIHTTYQQTIAA-TGRLSSTDPNLQNIPIRTES------------- 660

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +   G   L+ AD + IE RV+A ++G++  I+AF +GED+
Sbjct: 661 -----------GRRIRRVFVVGEGYDCLMSADYSQIEMRVMAHLSGDEGLIQAFNDGEDL 709

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++ F     +V+ E RA  K M   L Y     G +K  +   +     +  + +
Sbjct: 710 HRFVGSRVFGVEPSEVTSEMRAKVKAMSYGLAYGLSAFGLSKQLRISTAEAQRLMDGYFE 769

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
                  +      ++                      +   +D     A+   + G+A 
Sbjct: 770 RFGGVRDYLRQIVDDARATGYTETMMGRRRYLPDLTSDNRQRRDMAERMALNAPIQGSAA 829

Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +++KKA     +         ++   + +     V  G      R+  
Sbjct: 830 DIMKKAMLGVDEALRAANLRSRVLLQVHDELIVEVGAGERDEVERIVR 877



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGG 595
           +  A+R+ +         +  +  ++  +R   Y++   G   YL   TS   + R    
Sbjct: 757 TAEAQRLMDGYFERFGGVRDYLRQIVDDARATGYTETMMGRRRYLPDLTSDNRQRRDMAE 816

Query: 596 KLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           ++  N  +Q  + DI+ + M    +          ++L VHDE++ E        V  + 
Sbjct: 817 RMALNAPIQGSAADIMKKAMLGVDEALRAANLRSRVLLQVHDELIVEVGAGERDEVERIV 876

Query: 649 -SLMTKNPSWAKGLPLK 664
              M      A  +PL 
Sbjct: 877 REQMGAAADLA--VPLD 891


>gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
 gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
          Length = 931

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/499 (15%), Positives = 160/499 (32%), Gaps = 69/499 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           S + + L D T++    N+  E  +  K LGI +    +    +L       +   N   
Sbjct: 409 SPVKRILEDSTILKNVFNAK-ELYVSLKRLGIALKGVSF--DLLLVSYLLDTNDNNNDLG 465

Query: 115 ALNFSEH---LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           AL        +   EE     A+F   +      D     H+    +     +  +    
Sbjct: 466 ALAHDNDYYAVMTDEEVYGKGAKFAIPAA-----DADFFEHLGRKAMAINLLREPLLDRL 520

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              ++     D E  L  +   +   G  +D + +L+++  + +   +L++ I +     
Sbjct: 521 LSHEQTKLYEDIELPLTKILADMESTGITVDSEQLLQMRSKLTERLSELEQKIYQQAGHE 580

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             + +    L + LF       +  ++    T   +L       + + ++  R  +   +
Sbjct: 581 F-NIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEKMGDVPIVESILAYRQVAKIQS 639

Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +  L   +  SD ++         ++TGR S      QN+P                
Sbjct: 640 T-YVEGLLRVIHGSDSKVHTRY-LQTLTQTGRLSSVDPNLQNIP---------------- 681

Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   + S+   +++ AD + IE RVLA I G+     AF NGE
Sbjct: 682 --------VRIEEGRQIRKAFVPSHSDWQILSADYSQIELRVLAHITGDKNLQAAFINGE 733

Query: 407 DIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           DI+  T  + F    D+ V    R   K +   + Y     G +K            ++ 
Sbjct: 734 DIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYGISDFGLSKNIGVSRKEAKAIIET 793

Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500
           +         + D                         ++     +      A+   + G
Sbjct: 794 YFDQYPDVKKWSDDIIASARETGYVETIAHRRRYLPDIKAKRFNARSFAERTAMNSPIQG 853

Query: 501 TACELVKKAWRAKHQGVLQ 519
           +A +++K A       + Q
Sbjct: 854 SAADIIKIAMIKVQAAIEQ 872



 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            A+ +           K+    ++ S+R   Y + +     YL    ++    R++  + 
Sbjct: 786 EAKAIIETYFDQYPDVKKWSDDIIASARETGYVETIAHRRRYLPDIKAKRFNARSFAERT 845

Query: 598 TENI-VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
             N  +Q  + DI+   M        + G    ++L VHDE++ E P +    +  L 
Sbjct: 846 AMNSPIQGSAADIIKIAMIKVQAAIEQAGMQAHMLLQVHDELIFEAPASEMADLEKLV 903


>gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S]
          Length = 875

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/485 (15%), Positives = 156/485 (32%), Gaps = 62/485 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   +   I +         +LA     PS   +   ++       
Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD-- 417

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDL 476

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D D +  ++  +    K L+  I  L      +      L +
Sbjct: 477 ELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLAGEEF-NINSPKQLGV 535

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF    +  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 536 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 631 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              ++V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 750

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  S +  ++      A+   + G+A +++KKA    
Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILM 810

Query: 514 HQGVL 518
            + ++
Sbjct: 811 SERLV 815


>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988]
 gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561]
 gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161]
 gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 875

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/485 (15%), Positives = 156/485 (32%), Gaps = 62/485 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   +   I +         +LA     PS   +   ++       
Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD-- 417

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDL 476

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D D +  ++  +    K L+  I  L      +      L +
Sbjct: 477 ELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLAGEEF-NINSPKQLGV 535

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF    +  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 536 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 631 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              ++V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 750

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  S +  ++      A+   + G+A +++KKA    
Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILM 810

Query: 514 HQGVL 518
            + ++
Sbjct: 811 SERLV 815


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 91/550 (16%), Positives = 172/550 (31%), Gaps = 84/550 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK-KTLGIDIPS 90
            A+A  D      D T+        L   L D     + H++    +    +   +   +
Sbjct: 361 LAFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALAARGFTLAGVA 420

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                 + LA++      L+     +     L+     +     F     +       R 
Sbjct: 421 ADTALEAYLAQSGRRSFDLEPLAEEV-LGRRLSPAGADENQGTLFADEDAE-----AERQ 474

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                  L      R   A     + L   +D E  L  +   +   G  ID  L   L+
Sbjct: 475 MAAAHAVLDLADALRGKLAETGAEQLL---TDIELPLVGVLAEMEQVGIAIDERLFQDLE 531

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---------- 260
           +  + E  K  +           +      L+  LF   G+      +            
Sbjct: 532 KGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMPKTKKIKTGYTTDADSLAW 591

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L++   H  +  L +   +NRL +       +  LS++VS D R+  T     A+ TGR 
Sbjct: 592 LQAQTQHPFLDHLLRWREVNRLKTV------VEGLSKSVSPDTRIHTTYNQMIAA-TGRL 644

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVA 379
           S      QN+P +                              +R   IA  G + L+ A
Sbjct: 645 SSVDPNLQNIPIRTL------------------------EGQQIRKAFIAGPGYESLMTA 680

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   I+AF +GED++ T  AK F+     V  E R   K M   L
Sbjct: 681 DYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIKAMSYGL 740

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------------- 481
            Y     G ++            ++ + Q       +      ++               
Sbjct: 741 AYGLSAFGLSQQLGIETGEAAKMMEDYFQRFGGVRDYLHDLVVQARATGYTETMFGRRRY 800

Query: 482 -------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGF 528
                  +   ++     A+   + G+A +++K A     +G+       ++   + +  
Sbjct: 801 LPDLASDNRQRREMAERMALNAPIQGSAADIIKVAMIRVREGLREQQLKSRMLLQVHDEL 860

Query: 529 ACVVQEGGSI 538
              +  G + 
Sbjct: 861 VLEIAPGEAP 870



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
           +Q  + DI+   M    +          ++L VHDE+V E        V  L    M 
Sbjct: 824 IQGSAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVRREMG 881


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/493 (17%), Positives = 163/493 (33%), Gaps = 87/493 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114
           +   L D+++  + ++      L K       DI +   +     A + GL         
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATREL 173
             N  + + K    + +I    K  I+    Y  T       W+L           T  L
Sbjct: 427 -KNLFKEVLKETWIENIIIASAKIVINFIALYKQT------IWELKDN-------KTFRL 472

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +      S+ +  +  +   +   G  +D + + +L      E  KL+E+I  L+     
Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287
           +      L   LF    +     S            + +L++      DL+L     +  
Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                ++L + + +      T     ++ TGR S      QN+P +              
Sbjct: 586 KNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +D
Sbjct: 633 -----------SEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T  + FN    +++ E R   K +   + Y     G AK            ++++ 
Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYF 741

Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504
              K    + +  +A +                   H   ++      A+   + GT  +
Sbjct: 742 AEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNAD 801

Query: 505 LVKKAWRAKHQGV 517
           ++K A     Q +
Sbjct: 802 IIKIAMINLDQEI 814


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 127/367 (34%), Gaps = 54/367 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            S+ +  +  +   +   G  +D + + +L      E  KL+E+I  L+     +     
Sbjct: 473 YSNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIGSPK 531

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293
            L   LF    +     S  T         + +L++      DL+L     +       +
Sbjct: 532 QLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 591

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +      T     ++ TGR S      QN+P +                    
Sbjct: 592 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 633 -----SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN    +++ E R   K +   + Y     G AK            ++++    K  
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A +                   H   ++      A+   + GT  +++K A 
Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQLAERAAINAPIQGTNADIIKIAM 807

Query: 511 RAKHQGV 517
               Q +
Sbjct: 808 INLDQEI 814


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 135/360 (37%), Gaps = 55/360 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L  +   +   G R D++++ ++ E I +    L+ +I K  D    +     
Sbjct: 484 YVNVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADEQF-NINSPK 542

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + ++  ++    T   +L       L  D IL     S      ++ L 
Sbjct: 543 QLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKIKNTYIDGLR 602

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + ++   GR+         + TGR S      QN+P +                      
Sbjct: 603 DVINKKTGRIHSRFN-QTVTSTGRISSTEPNLQNIPIKT--------------------- 640

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R  +++S G  LV +D + IE RVLA ++ + + I AFA+G DI+  T ++
Sbjct: 641 ---HEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASE 697

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+TP D+VS E R++ K +   + Y     G ++            +  +  + +    
Sbjct: 698 VFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYIDNYLGHFQGIKK 757

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                       + ++ +  ++      A+   + GTA +++K A 
Sbjct: 758 YMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQGTAADIIKIAM 817



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAIS 606
           + + +     +H+             +    Y+    ++    R++G ++  N  +Q  +
Sbjct: 753 QGIKKYMNDIIHVGTEKGYVETLLHRR---RYIPELKAKNFNIRSFGERIALNTPIQGTA 809

Query: 607 RDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            DI+   M               ++L +HDE+V + PD     V  +C +M
Sbjct: 810 ADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE---VAEVCEIM 857


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/494 (16%), Positives = 167/494 (33%), Gaps = 75/494 (15%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   + +  ++    N   + ++FK+ LG+ +    +    +LA      ++  N    
Sbjct: 372 ELRAVIENPAIIKNVFNVKAQLVMFKR-LGLALQGVDF--DFLLAAYLLDTTANDNELST 428

Query: 116 L--NFSEHLTKMEEGKALIARFCKGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L   F  ++   EE     A+F           +   +A+ +   +        D     
Sbjct: 429 LAQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLGQKADALMQLETPTLAALTD----- 483

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              +++   +D E  L  +   +  RG  I+   + +        R +  ED + L  G 
Sbjct: 484 --HEQMHLYTDIELPLAHVLADMEYRGIAINQARLAE-IGTDLTGRIQAIEDAIYLEAGE 540

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSG 286
             +      L + LF   G+ ++  ++       +   + +LA      D +L     + 
Sbjct: 541 KFNINSPKQLGVLLFEKMGLPVIKKTK--TGYSTAVDVLEKLAHQAPIVDYVLQYRQLAK 598

Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   V+  D ++         ++TGR S      QN+P +            
Sbjct: 599 LKSTYVDGLLAVVNQKDSKIHTRF-LQTLTQTGRLSSVDPNLQNIPMRS----------- 646

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R+  + S    ++  AD + IE RVLA + G+    +AF N
Sbjct: 647 -------------DEGRQIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLN 693

Query: 405 GEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           GEDI+  T    F       V+  QR   K +   + Y     G A       +     +
Sbjct: 694 GEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVYGISDFGLANNLGISRAQAKQFI 753

Query: 460 QQFS----------QNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKL 498
             +           +N+K+ +  + +               + +  ++      A+   +
Sbjct: 754 DTYFKEFPKVHEWMENIKAVAHAQGYVETIAKRRRYLPDIHAKNFNLRSFAERTAMNSPI 813

Query: 499 IGTACELVKKAWRA 512
            G+A +++K A   
Sbjct: 814 QGSAADIIKIAMIK 827



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M               ++L VHDE++ E P +   ++  L 
Sbjct: 813 IQGSAADIIKIAMIKVADALAENNMQARMLLQVHDELIFEAPTSEIPALTALV 865


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/538 (16%), Positives = 158/538 (29%), Gaps = 75/538 (13%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D  E        L   + D     V HN+       +         +     + LA    
Sbjct: 373 DPAELDEADEQALAAWIADPRRPKVMHNAK---NALRVFPEQGWRLEGVSMDTALAAYLV 429

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P     A  AL       ++    +   +   G+ D    D   A       L   +  
Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAPSADGQLAFGADDRAEADALMAQARAVLDLGEAFAV 489

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           R  E           L D E    +L   +   G   D   +  +++  A   ++  ++ 
Sbjct: 490 RLEEV-----GATGLLHDMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQQAVKEA 544

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +      L+  LF    +     ++    +            +  L  +  
Sbjct: 545 HAAVGREF-NLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHELPVIML 603

Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                 KL      L + +  DGR+  T     A+ TGR S      QN+P +       
Sbjct: 604 RHREQAKLRVTVEGLIKTIGQDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------ 656

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G + L+ AD + IE RV+A ++ +   I
Sbjct: 657 ------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLI 698

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF +GED++ T  ++ F      V  E R   K M   L Y     G ++     A   
Sbjct: 699 EAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEA 758

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              +  + Q       +      E+                      +   ++     A+
Sbjct: 759 RGLMDTYFQRFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMAL 818

Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              + GTA ++VK A           R   + +LQ+  ++    A   +E      RR
Sbjct: 819 NAPIQGTAADIVKVAMLHVDRALTEARLTSRMLLQVHDEIVLEIAAGEREQVEEILRR 876



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 88/278 (31%), Gaps = 27/278 (9%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK       I+         T   +   P  +    +   G+ +        G +  
Sbjct: 616 EGLIKTIGQDGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G     V  
Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVDKSAVDA 725

Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +   L   L+           +  AR + +         +  +H V+  +R 
Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARGLMDTYFQRFGGVRDYLHRVVEEARA 785

Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620
             Y++ + G   YL    S   + R    ++  N  +Q  + DI+   M +  +      
Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLHVDRALTEAR 845

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656
               ++L VHDEIV E        V  +    M+    
Sbjct: 846 LTSRMLLQVHDEIVLEIAAGEREQVEEILRREMSTAVE 883


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 135/360 (37%), Gaps = 55/360 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L  +   +   G R D++++ ++ E I +    L+ +I K  D    +     
Sbjct: 484 YINVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADEQF-NINSPK 542

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF    + ++  ++    T   +L       L  D IL     S      ++ L 
Sbjct: 543 QLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKIKNTYIDGLR 602

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + ++   GR+         + TGR S      QN+P +                      
Sbjct: 603 DVINKKTGRIHSRFN-QTVTSTGRISSTEPNLQNIPIKT--------------------- 640

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R  +++S G  LV +D + IE RVLA ++ + + I AFA+G DI+  T ++
Sbjct: 641 ---HEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASE 697

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+TP D+VS E R++ K +   + Y     G ++            +  +  + +    
Sbjct: 698 VFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYIDNYLGHFQGIKK 757

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                       + ++ +  ++      A+   + GTA +++K A 
Sbjct: 758 YMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQGTAADIIKIAM 817



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAIS 606
           + + +     +H+             +    Y+    ++    R++G ++  N  +Q  +
Sbjct: 753 QGIKKYMNDIIHVGTEKGYVETLLHRR---RYIPELKAKNFNIRSFGERIALNTPIQGTA 809

Query: 607 RDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            DI+   M               ++L +HDE+V + PD     V  +C +M
Sbjct: 810 ADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE---VAEVCEIM 857


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 124/378 (32%), Gaps = 60/378 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L  +   +   G ++D D +  L E + +    + +   KL      +     
Sbjct: 470 YQEIELPLIKVLAQMELNGVKVDKDWLANLSEKLGKRLAIITDKAHKLAGEEF-NLNSPK 528

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            L   LF   G+ ++  ++       + S + +L     +  L S    + KL     ++
Sbjct: 529 QLGEILFEKLGLPVIKRTKTG--YSTNASVLEKLEGKHEIIPLISEYRELAKLKSTYIDS 586

Query: 295 LSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L   +     ++  +      + TGR S      QN+P +                    
Sbjct: 587 LPPLINDETAKIHTSFN-QMVTATGRLSSTEPNLQNIPIRT------------------- 626

Query: 354 ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   I   +   L+  D + IE RV A ++G+    +AF N  DI+  T
Sbjct: 627 -----EEGREIRKAFIPSRSDMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTET 681

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKS 468
            A+ F    + V+ + R   KV+   + Y   A    +            + ++ +    
Sbjct: 682 AAEVFEVKAEAVTPDLRRHAKVINFGIAYGMSAYGLSQDLDIPVEEAQTYIDKYFERFSG 741

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + +                       +  S +   +      A+   + GTA +++K
Sbjct: 742 VKKYMEQTIEKVKKLGYAETMFGRRRYIPEINSSNYHRRSFAERTAINTPVQGTAADIMK 801

Query: 508 KAWRAKHQGVLQLWKDLT 525
           K+    +  + +   DL 
Sbjct: 802 KSMLDVYSCLKKSELDLN 819



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKL 597
            A+   +         K+ +   +   ++L Y++   G   Y+    S     R++  + 
Sbjct: 727 EAQTYIDKYFERFSGVKKYMEQTIEKVKKLGYAETMFGRRRYIPEINSSNYHRRSFAERT 786

Query: 598 TENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
             N  VQ  + DI+ + M +       ++   +I+L VHDE+V E            +  
Sbjct: 787 AINTPVQGTAADIMKKSMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKE 846

Query: 650 LM 651
            M
Sbjct: 847 KM 848


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/514 (17%), Positives = 165/514 (32%), Gaps = 95/514 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  ++  + +    + +  +++  T +LA        +    LAL    + T   E 
Sbjct: 349 IGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 407

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLSDGE 184
                   K   +    +  +A          +Y   D   T   +    K L P     
Sbjct: 408 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEPHLLDL 452

Query: 185 RDLWLLD-----QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
              +  D       + + G ++D   +  L +    E K L E+I  L +    +     
Sbjct: 453 AKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRF-NLNSPK 511

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            +   LF    + L    +G          + +L     +         + KL       
Sbjct: 512 QVGDILFEK--LKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAKLYSTYCEP 569

Query: 295 LSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           L +    D   R+  +    G + TGR S      QN+P                     
Sbjct: 570 LLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------------------- 609

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                G  +   +SC IA  G   +  D + IE R+LA  + ++  + AF N EDI+  T
Sbjct: 610 -----GQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHART 664

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKS 468
               F     + + E R+I K +   L Y  G K      K  A+     ++++ +N  S
Sbjct: 665 AIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTS 720

Query: 469 TSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             ++                    + +   E+        Y   ++   L G+A +++K 
Sbjct: 721 IKSYFEKVKNEAKANGFISTLSGRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKF 780

Query: 509 AW-------RAKHQGVLQLWKDLTEGFACVVQEG 535
           A            + +LQ+  +L       + E 
Sbjct: 781 AMLEIAKILNQDKRLILQIHDELIFEVKDELCEN 814



 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631
           G   Y +   ++ M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE
Sbjct: 743 GRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDE 802

Query: 632 IVSETPDTPYFS-VGTLCSLM 651
           ++ E  D    + V     +M
Sbjct: 803 LIFEVKDELCENFVKKTSDIM 823


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
          Length = 887

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/513 (15%), Positives = 167/513 (32%), Gaps = 77/513 (15%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            ++   L DE +     +     ++    LGI      +    +LA       + +N   
Sbjct: 365 DNIKHILEDEKIKKNVFDLK-RSMVGAHRLGIHTHGLDY--DMLLASYL---VNNENNSN 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATREL 173
            L    HL      K  +  + KG  +  P D     NH+ +     E  K+ +    + 
Sbjct: 419 DLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKD 478

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++       E     +   +   G ++    +++LQ   A + K+L++ I         
Sbjct: 479 HEQDALFDTIEIPTARVLARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQAGEKF- 537

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L   LF   G+ ++  ++     +++ +      + +  +++  R  +   + 
Sbjct: 538 NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQST 597

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  DGR+         + TGR S      QN+P +                
Sbjct: 598 -YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 640

Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         +R   +    +G      D + +E RVLA ++G+    +AF  G D
Sbjct: 641 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 690

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+  T  K F+      V+   R   K +   + Y     G +K            +  +
Sbjct: 691 IHSHTAMKIFHLDSPKDVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAKEFIDNY 750

Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501
            +       + D    E+                      +  ++      A+   + G+
Sbjct: 751 FEQYPQIRDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGS 810

Query: 502 ACELVKKAWRA----------KHQGVLQLWKDL 524
           A +++K A             K + VLQ+  +L
Sbjct: 811 AADIIKIAMINMQKKLEEMHLKTKMVLQVHDEL 843



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     +V  +   +M   
Sbjct: 807 IQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKKIVPEVMQSA 866

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 867 V--RLDVPLIADSGWGHNWY 884


>gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 880

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/514 (14%), Positives = 160/514 (31%), Gaps = 70/514 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW     +++  T+ S + +DL + + ++ +        F+R  +    LG+D+ +
Sbjct: 338 IIGFAWGHGE-QIYASTDLSLLSTDLFKKVFEKPIATY----DFKRSKVLLSHLGLDLVA 392

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA                     ++   +       + KG   + P      
Sbjct: 393 PSY--DARLANYLLSNVEDNELTTIARLFTDISLEADDSI----YGKGVKRAVPEKELLL 446

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H+          +  +        ++    + E  L  +   +   G +++   +  + 
Sbjct: 447 GHLARKVKVLLDSRAPMVEKLADHDQIALYHEIELPLANILAKMEIEGIKVNRATLQDMA 506

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           E      + L ++I  +      +      L   LF    + L    +       +   +
Sbjct: 507 EQNKAIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVL 565

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + + +DG++         ++TGR S    
Sbjct: 566 ERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDP 624

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P                                +R     S     L+ +D + I
Sbjct: 625 NLQNIP------------------------VRLEQGRLIRKAFTPSQEDAVLLSSDYSQI 660

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ- 442
           E R+LA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   + Y  
Sbjct: 661 ELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGIVYGI 720

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G +             +  + +       +                      +    
Sbjct: 721 SDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDI 780

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
            S +  ++      A+   + G+A +++K A   
Sbjct: 781 NSRNFNVRSFAERTAINSPIQGSAADILKIAMIN 814


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 127/380 (33%), Gaps = 63/380 (16%)

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D+   R  ++      + E  L  +   +  RG ++D  ++ +++  I     ++   I
Sbjct: 508 EDILQERNQWQL---YKNIELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKI 564

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            ++      +      L   LF    + +V  ++           +  L+ D  + +L  
Sbjct: 565 FEIAGEEF-NLNSPKQLGYILFEKLQLPVVKKTK--TGYSTDAKTLETLSHDYEICKLLL 621

Query: 285 SGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + KL T     L + +S   G++  T      + TGR S      QN+P       
Sbjct: 622 DYRQLHKLKTTYLVGLKDLISKTTGKIHTTYN-QTITATGRLSSTDPNLQNIP------- 673

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +  N  +  + AD + IE R+LA ++ +  
Sbjct: 674 -----------------IKLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTN 716

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I+AF   +DI+  T A+ F     +V++E R+  K +   + Y     G ++       
Sbjct: 717 LIQAFQEQQDIHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGISDYGLSRQLGISRK 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492
                +  +         + D    ++                      +  ++      
Sbjct: 777 QAKTYIDNYLTRFSGVKEYMDQIVNQAKMNGYVETLYNRRRNLPDISHRNFNIRSAAERT 836

Query: 493 AVKDKLIGTACELVKKAWRA 512
           A+   + GTA +++K A   
Sbjct: 837 AINTPIQGTAADIIKDAMVK 856


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 127/367 (34%), Gaps = 54/367 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            SD +  +  +   +   G ++D + + +L      E  KL+E+I  L+     +     
Sbjct: 519 YSDIDLPICFILDKMEKVGIKVDANYLKQLSTEFGAEILKLEEEIFALSGTKF-NIGSLK 577

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293
            L   LF    +     S            + +L++      DL+L     +       +
Sbjct: 578 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 637

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +      T     ++ TGR S      QN+P +                    
Sbjct: 638 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 678

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 679 -----SEGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 733

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN    +++ E R   K +   + Y     G AK            ++++    K  
Sbjct: 734 CQIFNLQKHELTNEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 793

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A +                   H   ++      A+   + GT  +++K A 
Sbjct: 794 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 853

Query: 511 RAKHQGV 517
               Q +
Sbjct: 854 INLDQEI 860


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/556 (17%), Positives = 197/556 (35%), Gaps = 88/556 (15%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQ---YLRDE 64
           ET         G+  Y E+  +   +++++D+             +P  + +    L  +
Sbjct: 334 ETIVAFDTETTGLD-Y-EKDKLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKDAALAMK 391

Query: 65  TV---MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +     V HN  F+     + L  D+ +  +  + +LA      S+L    L+    +H
Sbjct: 392 KIFNSKVVGHNIKFDLHFVSRFLNDDMLNI-YSDSMILAWLINPESALGLDKLSDKLLDH 450

Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFK 175
                   +++G+           D+  Y    A   ++ + LF E  K   +AT  + +
Sbjct: 451 TMLGFKDTVKKGETFA---SVELEDASKYAAEDAYITLKLFNLFNEKLKLQ-DATHLIDE 506

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 + E         +   G R+D + +      + +    L + I +       + 
Sbjct: 507 S----QNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTIYEQAGTEF-NI 561

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSGS 287
             T  L + LF   G+ +   ++    T +++L      H  I+ L +   + +L S+  
Sbjct: 562 NSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEYREIYKLYSTYI 621

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
             L   +L +    +GR+  +    G + TGR S      QN+P          +T Q L
Sbjct: 622 EPLLKLSLED---KEGRIHTSFVQTG-TATGRLSSKNPNLQNIP---------ARTSQGL 668

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GKKL+  D + IE R+LA  + +   + AF   +D
Sbjct: 669 K---------------IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKD 713

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFS 463
           I++ T    F    ++ +  +RA+ K +   L Y  G K                ++++ 
Sbjct: 714 IHLQTAIALFG---EEEAPSKRAVAKTVNFGLLYGMGQKKLSETLGITTKEAKEIIEKYF 770

Query: 464 QNVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           ++  +  T+                      +   E+     +  Y   +V     G+A 
Sbjct: 771 ESFPTVKTYFRSIVDNSKEMGYVETLLKRRRYFDYETASPMFRAAYDRESVNSVFQGSAS 830

Query: 504 ELVKKAWRAKHQGVLQ 519
           +L+K +       + +
Sbjct: 831 DLIKLSMNKIATVIKE 846



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A+ +           K     ++ +S+ + Y +       Y +  T+  M    Y  + 
Sbjct: 761 EAKEIIEKYFESFPTVKTYFRSIVDNSKEMGYVETLLKRRRYFDYETASPMFRAAYDRES 820

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650
             ++ Q  + D++   M          K    ++L +HDE++ E        +      +
Sbjct: 821 VNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDELIFEVDADEAEMLGNRFKEI 880

Query: 651 M 651
           M
Sbjct: 881 M 881


>gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378]
          Length = 552

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   +   I    K      +LA     PS   +   ++       
Sbjct: 40  SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHD-- 94

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 95  -YTEVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDL 153

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D   +  ++  +A   K L+E I  L      +      L +
Sbjct: 154 ELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 212

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF    +  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 213 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 272

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 273 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 307

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 308 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 367

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              D+V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 368 VEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 427

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                  +  S +  ++      A+   + G+A +++KKA 
Sbjct: 428 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 484



 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M        +      ++L VHDE++ E P+     +  + 
Sbjct: 472 IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIV 524


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/586 (17%), Positives = 187/586 (31%), Gaps = 118/586 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQYLR 62
           D ET               + A +   ++ ++DE       + +        S+      
Sbjct: 306 DTETT-DVD---------TQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFAAWA 355

Query: 63  DETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118
              +     +  N  ++  + K+ LG++ P   +  T +LA      SS+    LA   +
Sbjct: 356 ISQIYKGCVIGQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALAKRLY 414

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                K E+       F   ++++                  +Y   D   T + +K  +
Sbjct: 415 DYDTIKFEDVVKRGETFASVALENAA----------------KYAAEDAWITLKFYKSFL 458

Query: 179 PLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            L D E  L L D            +   G  I+ + +  L      + K L  +I +LT
Sbjct: 459 NLLDPEL-LALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELT 517

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILN 280
                +      L   LF    + +   ++         L  ++  H  I +L +   L 
Sbjct: 518 GENF-NINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYRELY 576

Query: 281 RLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +L S+         L      D   R+       G + TGR S      QN+P +     
Sbjct: 577 KLQSTYC-----EPLLNLAKKDANSRIYTNFIQTG-TSTGRLSSKNPNLQNIPAR----- 625

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G  +  VR C  A +    V  D + IE R+LA  + ++  
Sbjct: 626 -------------------GALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEAL 666

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
           ++AFAN EDI+  T    F +   +     RA+ K +   L Y  G    A       + 
Sbjct: 667 LRAFANDEDIHARTAISIFGSAEGQ----NRAVAKSINFGLIYGMGSSKLANQVSITRAE 722

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494
               ++++ +   +   F +  +  + +                          Y   AV
Sbjct: 723 AKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRLFDFTTATPMQTAMYEREAV 782

Query: 495 KDKLIGTACELVKKAWRAKHQG---VLQLWKDLTEGFACVVQEGGS 537
                G+A +++K A            ++   + +     VQ+G +
Sbjct: 783 NTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQDGYA 828



 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 86/284 (30%), Gaps = 31/284 (10%)

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVT--TY-------------AKAFNTPIDKVS 425
            +  EA VLA +  E   I+      ++Y    TY             ++ +   I   +
Sbjct: 549 YSTDEA-VLAELIDEHPVIEKLLEYRELYKLQSTYCEPLLNLAKKDANSRIYTNFIQTGT 607

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQ----QFSQ-NVKSTSTFEDWEQAE 479
              R   K   L      GA             D       +SQ  ++  + F   E   
Sbjct: 608 STGRLSSKNPNLQNIPARGALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALL 667

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                 +D +   A+   + G+A    +   ++ + G++     +               
Sbjct: 668 RAFANDEDIHARTAIS--IFGSAEGQNRAVAKSINFGLI---YGMGSSKLANQVSITRAE 722

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGKLT 598
           A+             K  +  +  +++   +     G     +  T+  M+   Y  +  
Sbjct: 723 AKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRLFDFTTATPMQTAMYEREAV 782

Query: 599 ENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDT 639
             I Q  + DI+   M            ++L +HDE++ E  D 
Sbjct: 783 NTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQDG 826


>gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
 gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
          Length = 875

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 157/477 (32%), Gaps = 62/477 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    I   + LG  +         +LA     PS   +   ++       
Sbjct: 363 SDASKVVYDAKKAMIAMHR-LGYAV--SGITFDIMLASYLLNPSDSIDDFTSVAIRHD-- 417

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAILEKRLLDDLEKNEQLALMEDL 476

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D   +  ++  +A   K L+E I  L +    +      L +
Sbjct: 477 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAEEEF-NINSPKQLGV 535

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF   G+  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 536 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 631 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              ++V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 750

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                  +  S +  ++      A+   + G+A +++KKA 
Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 137/463 (29%), Gaps = 78/463 (16%)

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-------- 182
           L A     +  + P    R    + W             T  L + L PL D        
Sbjct: 501 LYAYLLDPANTNMPVVAKRYLD-REWPA---DAPTRAAITGHLLRELPPLLDDARRKMYD 556

Query: 183 -GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L  +   +  RG ++D D +  L          L+  I +         R    L
Sbjct: 557 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEF-HIRSPKQL 615

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+    +     ++ T +   + S +  L     +  L      + KL     + + 
Sbjct: 616 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIP 675

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             V+   GRL  T     A  TGR S      QN+P +                      
Sbjct: 676 NLVNPHTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRS--------------------- 713

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+
Sbjct: 714 ---ELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQ 770

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471
                   V   QR   K +   + Y   A           +     ++ +         
Sbjct: 771 VLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEIYFATYPGIRR 830

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                          S +   ++     A    + GTA +++K A 
Sbjct: 831 YINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQGTAADIMKLAM 890

Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
                         +LQ+  +L         E  +   ++V  
Sbjct: 891 VQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVME 933


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 142/391 (36%), Gaps = 61/391 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  L  +   +  +G +ID+         + +E  K ++ I +       +     
Sbjct: 112 LIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEAGEEF-NINSPK 170

Query: 240 ALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGSAILKLNTL 295
            L   LF+   +     ++ G    ++   ++         L+L+    +      ++TL
Sbjct: 171 QLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTL 230

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              V S+ R+  +    G + TGR S      QN+P +                      
Sbjct: 231 PNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD------------------- 270

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +A  GK L+  D + +E RVL  ++ ++  IKA+   +D++  T  +
Sbjct: 271 -----GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYREEKDLHDLTARR 325

Query: 416 AFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            FN    D V++EQR I K++  ++ Y     G AK  K         ++++ +     +
Sbjct: 326 IFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVT 385

Query: 471 TFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           TFE                          +S +  ++ Q    AV   + GTA E++KK 
Sbjct: 386 TFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKV 445

Query: 510 WRA-----KHQGVLQLWKDLTEGFACVVQEG 535
                   K +  + L   + +     V+E 
Sbjct: 446 MLKVYEVLKDKDDIALLLQVHDELIFEVEEN 476



 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    +    ++  N ++Q  + ++L + M         K+   ++L V
Sbjct: 406 GRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQV 465

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  +        +   +M
Sbjct: 466 HDELIFEVEENSVEKYSEILADIM 489


>gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 875

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 155/477 (32%), Gaps = 62/477 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   + LG  +         +LA     PS       ++       
Sbjct: 363 SDASKVVYDAKKTMVAMHR-LGYAV--SGITFDIMLASYLLNPSDSIADFTSVAIRHD-- 417

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEERVVAPHLARKAVAIAVLEKRLLDDLEKNEQLALMEDL 476

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D   +  ++  +A   K L+E I  L      +      L +
Sbjct: 477 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 535

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF   G+  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 536 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 631 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              ++V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 750

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                  +  S +  ++      A+   + G+A +++KKA 
Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 129/384 (33%), Gaps = 69/384 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E     +   +   G ++    + +L+   A   K+L+E I K       +      L 
Sbjct: 487 IELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLG 545

Query: 243 MYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
           + LF   G+ ++  ++     +++ +      + +  D++  R  S   +   +  L + 
Sbjct: 546 VILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQST-YVKGLLDV 604

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +   DGR+         + TGR S      QN+P +                        
Sbjct: 605 IDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT----------------------- 640

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   + S     +   D + IE RVLA ++ +    +AF  G DI+  T  K 
Sbjct: 641 -EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKI 699

Query: 417 FNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           F+   +D+V+  QR   K +   + Y     G +K            + ++ +       
Sbjct: 700 FHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQA 759

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D                          + +  ++      A+   + G+A +++K A 
Sbjct: 760 YMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAM 819

Query: 511 RA----------KHQGVLQLWKDL 524
                       K + V+Q+  +L
Sbjct: 820 INMQKKLDELGLKTKMVVQVHDEL 843



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    K   + G     V+ VHDE++ + P     ++  +  S+M   
Sbjct: 807 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 866

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 867 VK--LDVPLVADAGWGHDWY 884


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 117/371 (31%), Gaps = 58/371 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 514 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 572

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 573 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 632

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 633 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 676

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 677 ---------LEQGRLIRKAFTPSQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 727

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F     + V+   R   K +   + Y     G +             +  +
Sbjct: 728 IHTSTAMRVFGIDKAEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 787

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 788 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 847

Query: 502 ACELVKKAWRA 512
           A +++K A   
Sbjct: 848 AADILKIAMIN 858


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/493 (17%), Positives = 163/493 (33%), Gaps = 87/493 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114
           +   L D+++  + ++      L K       DI +   +     A + GL         
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATREL 173
             N  + + K    + +I    K  I+    Y  T       W+L           T  L
Sbjct: 427 -KNLFKEVLKETWIENIIIESAKIVINFIALYKQT------IWELKDN-------KTFRL 472

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +      S+ +  +  +   +   G  +D + + +L      E  KL+E+I  L+     
Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287
           +      L   LF    +     S            + +L++      DL+L     +  
Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                ++L + + +      T     ++ TGR S      QN+P +              
Sbjct: 586 KNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +D
Sbjct: 633 -----------SEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T  + FN    +++ E R   K +   + Y     G AK            ++++ 
Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYF 741

Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504
              K    + +  +A +                   H   ++      A+   + GT  +
Sbjct: 742 AEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNTD 801

Query: 505 LVKKAWRAKHQGV 517
           ++K A     Q +
Sbjct: 802 IIKIAMINLDQEI 814


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 102/597 (17%), Positives = 195/597 (32%), Gaps = 127/597 (21%)

Query: 7   DIETRSPQPLPKVGV----WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           D ET       K  +    +AY+E +A      + +     ++            L + L
Sbjct: 324 DTET-DDLDTKKANLVGFSFAYSEEKAYYVPIGHNYLGVGDQV-----------GLDKAL 371

Query: 62  RDETVMC----VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              + +     + HN  F+  L  +  GID   K  + T +LA      SS+    +A  
Sbjct: 372 EAISKIFEHTIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLESVAKR 429

Query: 118 FSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           F +H     +E       F + SID+                  +Y   D   T  ++ +
Sbjct: 430 FLDHDMIAYKETVKKGEDFSQVSIDAA----------------CKYASEDAVITYMVYFK 473

Query: 177 LIPLSD-------------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L+                  E         +   G +ID+    +L+  + +   ++ + 
Sbjct: 474 LLDALRKQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEITQK 533

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSIL-SHSNITQLAK 275
           I +   G   +   T  L   LF    +  +  ++        TL+++   H  I  L +
Sbjct: 534 IYEYAGGEF-NINSTKQLAAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPLLLE 592

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              L +L S+      ++ L      D   R+  +    G + TGR +      QN+P +
Sbjct: 593 YRELYKLKSTY-----IDPLINYAKRDPKHRIYTSFIQTG-TATGRLASKNPNLQNIPIK 646

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+  D + IE R+LA  +
Sbjct: 647 T------------------------ELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFS 682

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   ++AF  G DI++ T  K F     + +KE+R I K +   L Y  G    A+   
Sbjct: 683 KDPALLEAFQKGRDIHMETAIKLFGK---EHAKEKRNIAKSINFGLIYGMGSRKLAETLG 739

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------Y 489
                    ++ +  +  +  ++ +  +  +      +                     Y
Sbjct: 740 ISTKEAKAIIESYFASFPTVKSYLESVENFAKTHGYVETLLKRRRYFDFAHASGAQLAAY 799

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISA 540
              A      G+A +L+K A       +       ++   + +     VQE  +   
Sbjct: 800 LREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQIHDELIFEVQENQAQEL 856



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
            Y + A +   +   Y  + T  + Q  + D++   M               I+L +HDE
Sbjct: 784 RYFDFAHASGAQLAAYLREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQIHDE 843

Query: 632 IVSETPDTPYFSV-GTLCSLM 651
           ++ E  +     +      +M
Sbjct: 844 LIFEVQENQAQELAEEFKQIM 864


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 129/384 (33%), Gaps = 69/384 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E     +   +   G ++    + +L+   A   K+L+E I K       +      L 
Sbjct: 487 IELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLG 545

Query: 243 MYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
           + LF   G+ ++  ++     +++ +      + +  D++  R  S   +   +  L + 
Sbjct: 546 VILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQST-YVKGLLDV 604

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +   DGR+         + TGR S      QN+P +                        
Sbjct: 605 IDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT----------------------- 640

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   + S     +   D + IE RVLA ++ +    +AF  G DI+  T  K 
Sbjct: 641 -EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKI 699

Query: 417 FNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           F+   +D+V+  QR   K +   + Y     G +K            + ++ +       
Sbjct: 700 FHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQA 759

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D                          + +  ++      A+   + G+A +++K A 
Sbjct: 760 YMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAM 819

Query: 511 RA----------KHQGVLQLWKDL 524
                       K + V+Q+  +L
Sbjct: 820 INMQKKLDELGLKTKMVVQVHDEL 843



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    K   + G     V+ VHDE++ + P     ++  +  S+M   
Sbjct: 807 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 866

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 867 VK--LDVPLVADAGWGHDWY 884


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/493 (17%), Positives = 163/493 (33%), Gaps = 87/493 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114
           +   L D+++  + ++      L K       DI +   +     A + GL         
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATREL 173
             N  + + K    + +I    K  I+    Y  T       W+L           T  L
Sbjct: 427 -KNLFKEVLKEPWIENIIIESAKIVINFIALYKQT------IWELKDN-------KTFRL 472

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +      S+ +  +  +   +   G  +D + + +L      E  KL+E+I  L+     
Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287
           +      L   LF    +     S            + +L++      DL+L     +  
Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                ++L + + +      T     ++ TGR S      QN+P +              
Sbjct: 586 KNTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                         + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +D
Sbjct: 633 -----------SEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           I+  T  + FN    +++ E R   K +   + Y     G AK            ++++ 
Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYF 741

Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504
              K    + +  +A +                   H   ++      A+   + GT  +
Sbjct: 742 AEYKGVQKYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNAD 801

Query: 505 LVKKAWRAKHQGV 517
           ++K A     Q +
Sbjct: 802 IIKIAMINLDQEI 814


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 147/423 (34%), Gaps = 74/423 (17%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           ++        L  LS  E  +      +   G  +DL ++ +LQ   A + +   E    
Sbjct: 492 LDQELARIDSLSLLSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYS 551

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKD 276
           +    I +      L+  LF    +                L+S+     H  +  L   
Sbjct: 552 VIGKQI-NLGSPKQLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAH 610

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               RL  +      ++ L  +V+SDGR+  T     A+ TGR S      QN+P +  +
Sbjct: 611 RDATRLKVT------VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA 663

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395
                                      +R   +   G  +L+ AD + IE R++A ++ +
Sbjct: 664 ------------------------GRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRD 699

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF  GED++    ++AF+ PID+V+ E R   K M   L Y     G A+  K  
Sbjct: 700 AGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKIS 759

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
                + ++Q+         +                         + +S +  +++   
Sbjct: 760 TEEAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAE 819

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544
             A+   + G+A +++K A     Q +       ++   + +     V EG      ++ 
Sbjct: 820 RAALNAPIQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLV 879

Query: 545 NVP 547
              
Sbjct: 880 REH 882


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/525 (18%), Positives = 172/525 (32%), Gaps = 83/525 (15%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL---ALNFSEHLT 123
           V HN  F+  +    LG      R   + +LA     G P  L                 
Sbjct: 393 VGHNLKFDLEILHGALGFYPK-GRIGDSMILAWLLDSGAPVGLDFQMKRWFGHEMIPFEK 451

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
            +++G+       + + +    D   A +   ++L  E  KR  E+   L + L      
Sbjct: 452 MVKKGETFAQVALEEAAEYAGEDA-LATYRLYFRLEEELKKRGCESLLGLAESL------ 504

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E         + +RG R+D +   +L   +    ++L  ++     G   +   T  L  
Sbjct: 505 EFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSGEVFAHAGGEF-NLNSTQQLGG 563

Query: 244 YLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTL 295
            LF    +     ++         L  +L  H  I  + +   L +L S+    L    L
Sbjct: 564 VLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPILEYRELFKLKSTYIEPLTRFAL 623

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            +    + R+  +    G + TGR S      QN+P                        
Sbjct: 624 QD---KNRRIYTSFLHTG-TSTGRLSSKNPNLQNIP------------------------ 655

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
               A   +R   IAS G  L+  D + IE R+LA  + +   + AF  G DI+  T  K
Sbjct: 656 VKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKK 715

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTST 471
            F    ++ +K  R I K +   L Y  G++      +         +  +  +  +  +
Sbjct: 716 IFG---EREAKAHRGIAKTINFGLIYGMGSRKLSETLRISPKEAKGYIDSYFASFPTVKS 772

Query: 472 F--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           F                      + + +    + +  Y   AV     G+A +L+K A  
Sbjct: 773 FLKAQEEFALEHGYTETLLGRRRYFEFQQAPEYQKAAYLREAVNCIFQGSAADLIKLAMN 832

Query: 512 AKHQGVLQ---LWKDL---TEGFACVVQEGGSISARRVANVPRLV 550
              +   Q   LW  L    E      +E     AR +A V   +
Sbjct: 833 EIRRRFAQEESLWLLLQVHDELIFEAPKEHAEALARELALVMEGI 877



 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 17/195 (8%)

Query: 474 DWEQAESHHLWMQDQYPEF-----AVKDKLIGTACELVKKAWRAKHQGVLQ-----LWKD 523
           D+ Q E   L    Q P       A  D    TA ++  +     H+G+ +     L   
Sbjct: 680 DYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIFGEREAKAHRGIAKTINFGLIYG 739

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT 582
           +               A+   +         K  +      +    Y++   G   Y   
Sbjct: 740 MGSRKLSETLRISPKEAKGYIDSYFASFPTVKSFLKAQEEFALEHGYTETLLGRRRYFEF 799

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----IVLTVHDEIVSETP 637
             +   ++  Y  +    I Q  + D++   M    +         ++L VHDE++ E P
Sbjct: 800 QQAPEYQKAAYLREAVNCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDELIFEAP 859

Query: 638 DTPYFSVG-TLCSLM 651
                ++   L  +M
Sbjct: 860 KEHAEALARELALVM 874


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/562 (15%), Positives = 174/562 (30%), Gaps = 100/562 (17%)

Query: 15  PLPKVGVWAYA----EQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV 69
            L + G   YA    E      L  +A   +    +     +   +  L++L++E     
Sbjct: 304 DLLQDGALVYANVDNESYYDAQLYGFAISLQDRTEYIELSDALQDTAFLEWLKEENGK-- 361

Query: 70  AHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
              ++++   F   L  +           ++A                       K+ E 
Sbjct: 362 ---AVYDAKNFYHALHKNNIPFADVTFDVMIAAFL-----------VDGTLSDYDKLAEK 407

Query: 129 KALIARFCKGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD---- 182
                   K  +           ++    + +      +D+ A  +   R + + +    
Sbjct: 408 YQFDRSLLKDDVFGKKGKGKLVDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELFTT 467

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G    L  + ++ +  + +   L   I ++      +      L 
Sbjct: 468 IEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIAGMEF-NINSPKQLA 526

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297
             L+   G+      +   K   +   + +LA    +  L        K+ +     LS+
Sbjct: 527 GILYDELGL------KAGKKRSTAADVLEKLASQHPMIPLLLEHRKYQKIYSTYAVGLSK 580

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V  DG++         ++TGR S      QN+                           
Sbjct: 581 HVLKDGKIHTIFNQI-QTQTGRLSSSEPNLQNIS------------------------VR 615

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +AS G  L+ AD + IE R+LA +A E+  I AF +G DI+  T  + F
Sbjct: 616 DEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQIF 675

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +   D V    R   K +   + Y     G ++            + ++  +  +   F 
Sbjct: 676 DVEHDAVDANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKNFM 735

Query: 474 DWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
           D   A                        +  M++     A+   + G+A +L+K A   
Sbjct: 736 DTTIAFCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIH 795

Query: 511 --------RAKHQGVLQLWKDL 524
                   + K + +LQ+  +L
Sbjct: 796 IYKKMQEEQVKSRMILQIHDEL 817


>gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 881

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/401 (14%), Positives = 126/401 (31%), Gaps = 64/401 (15%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G +++   ++++ E        L ++I  L      +      L 
Sbjct: 480 IELPLANVLAKMEIAGIKVNKLTLMEMAEQNRNIIDALTQEIYDLAGEEF-NINSPKQLG 538

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297
             LF    + L    +       +   + +LA    +         I KL +     L +
Sbjct: 539 SILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQD 598

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +  DG++         ++TGR S      QN+P +                        
Sbjct: 599 YIMEDGKIHTRYV-QDLTQTGRLSSTDPNLQNIPIR------------------------ 633

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R     S +   L+ +D + IE RVLA I+G++  I AF +  DI+  T  + 
Sbjct: 634 MEQGRLIRKAFTPSSDDWLLLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRV 693

Query: 417 FNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           F    +  V+   R   K +   + Y     G +             +  + +       
Sbjct: 694 FGIEKEADVTANDRRNAKAVNFGIVYGISDFGLSNNLGISRQKARDYIDTYFERYPGIKK 753

Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + D                          S +  ++      A+   + G+A +++K A 
Sbjct: 754 YMDAVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAM 813

Query: 511 RAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545
               + ++      ++   + +     V +    + R++  
Sbjct: 814 INLDKALVDGEFKAKMLLQVHDEIVLEVPKQELAAVRQLVK 854


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/518 (16%), Positives = 166/518 (32%), Gaps = 86/518 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSS 108
           S L   L D  V     N +F+    K+T      + I ++      +LA        +S
Sbjct: 366 SPLKGMLEDSAVQK---N-VFD---LKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNS 418

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L   +  +  K      L       +   P  D    NH+          K  + 
Sbjct: 419 NDLGELVQGYDYYDLK----TDLEVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL 474

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +  ++       E     +   +   G ++    + +L+   A   K+L+E I K  
Sbjct: 475 KQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEA 534

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF   G+ ++  ++     +++ +      + +  D++  R  S
Sbjct: 535 GEEF-NLNSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQIS 593

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
              +   +  L + +   DGR+         + TGR S      QN+P +          
Sbjct: 594 KIQST-YVKGLLDVIDKRDGRIHTRY-LQTLTATGRLSSVDPNLQNIPART--------- 642

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S     +   D + IE RVLA ++ +    +AF
Sbjct: 643 ---------------EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAF 687

Query: 403 ANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
             G DI+  T  K F+   +D+V+  QR   K +   + Y     G +K           
Sbjct: 688 KTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKE 747

Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496
            + ++ +       + D                          + +  ++      A+  
Sbjct: 748 FIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINS 807

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            + G+A +++K A             K + V+Q+  +L
Sbjct: 808 PIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDEL 845



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M    K   + G     V+ VHDE++ + P     ++  +  S+M   
Sbjct: 809 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 868

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 869 VK--LDVPLVADAGWGHDWY 886


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/558 (15%), Positives = 165/558 (29%), Gaps = 98/558 (17%)

Query: 38  DDEPVKLWDRTE----QSAMPSDLLQY---------LRDETVMCVAHNSLFERILFKKTL 84
           D     L          +A+ ++ L           L D       H + +     +   
Sbjct: 350 DGGRAWLIAVASPDGSGAAIKTEALTAHDTAALGAWLADPAAPKAFHEAKWAAHALR--- 406

Query: 85  GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           G             LA     P                  L   + G+  ++       D
Sbjct: 407 GQGFSIAGVTTDIGLAAYIARPGQRSFQLPDLAVRYLRRQLGPDDSGQKQLSLLDAEQDD 466

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           +       AN   +           ++           L   E  L  +   + + G  +
Sbjct: 467 N-----AEANGAVSEAAAIRELGEALDDVLAKAGSADLLHTMELPLTFVLGAMEEAGIAV 521

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256
           D D +  L    +   ++  E    +    I +      L++ LF   G+          
Sbjct: 522 DQDALAGLHADFSARVQQAAESAYAVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTKTGH 580

Query: 257 --SEGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                 L+ +     H  ++ L +     RL ++         L +AV  DGR+  T + 
Sbjct: 581 TTDADALQWLFERTEHPFLSHLLEHRDATRLMTT------AQGLIKAVGPDGRIHTTFR- 633

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P +                           +  +R   +  
Sbjct: 634 QDVAATGRLSSTDPNLQNIPVRT------------------------EEARRIRGVFVVG 669

Query: 372 NGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G + L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PID+V  E R 
Sbjct: 670 EGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVGAELRR 729

Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----- 481
             K M   L Y     G A+            ++ +         +      E+      
Sbjct: 730 RVKAMSYGLAYGLSAFGLAQQLGVSGEEAKAQMEAYFARFGGVRDYLREVVEEARRKGYT 789

Query: 482 ----------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR------AKHQGVLQ 519
                           +   +      A+   + G+A +++K A        A      +
Sbjct: 790 ETLFGRRRYLPDLTSDNQQQRAVAERAALNAPIQGSAADIIKVAMIHVAEALAARNMRSR 849

Query: 520 LWKDLTEGFACVVQEGGS 537
           +   + +     V EG  
Sbjct: 850 MLLQVHDELVLEVAEGEQ 867


>gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067]
          Length = 566

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 155/477 (32%), Gaps = 62/477 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   + LG  +         +LA     PS       ++       
Sbjct: 54  SDASKVVYDAKKTMVAMHR-LGYAV--SGITFDIMLASYLLNPSDSIADFTSVAIRHD-- 108

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 109 -YTEVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAVLEKRLLDDLEKNEQLSLMEDL 167

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D   +  ++  +A   K L+E I  L      +      L +
Sbjct: 168 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 226

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF   G+  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 227 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 286

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 287 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 321

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 322 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 381

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              ++V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 382 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 441

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                  +  S +  ++      A+   + G+A +++KKA 
Sbjct: 442 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 498


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 127/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       + + + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVNVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
          Length = 896

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/499 (15%), Positives = 162/499 (32%), Gaps = 68/499 (13%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L Q L D+ +     +     +   +   +DI ++      +LA       + +N    
Sbjct: 376 PLRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYL---VNNENNSND 429

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L    HL      K  +  + KG   + P D     H+ A     E  K+ +    +  +
Sbjct: 430 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPEDDEFFEHLAAKVAVIEKLKQPLLEKLKDHE 489

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +       E  +  +   +   G +++  ++ +L    A + ++L+  I +       + 
Sbjct: 490 QDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEF-NL 548

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-- 293
                L   LF    +  +  ++    + +    + QL     +         I K+   
Sbjct: 549 NSPKQLGHILFEKLNLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQNT 606

Query: 294 ---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
               L E +  D R+         + TGR S      QN+P +                 
Sbjct: 607 YVKGLLECIQPDSRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT---------------- 649

Query: 351 ETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                        +R   + S  +G      D + +E RVLA ++G++   +AF +G DI
Sbjct: 650 --------DEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYDI 700

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  K F+    D+V+   R   K +   + Y     G +K            +  + 
Sbjct: 701 HAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIDNYF 760

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
           +       + D    ++                      +  ++      A+   + G+A
Sbjct: 761 EQYPQIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSA 820

Query: 503 CELVKKAWRAKHQGVLQLW 521
            +++K A     + + +L 
Sbjct: 821 ADIIKIAMINMQKKLDELH 839



 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     ++  +   +M   
Sbjct: 816 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 875

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 876 VK--LDVPLIAD 885


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 125/383 (32%), Gaps = 62/383 (16%)

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            R +E           +++ +  L      +  RG R+D + +L L   + ++   + E 
Sbjct: 449 ARSMEEKIAAQNMTRVMNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEK 508

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----DLIL 279
           + +     I +      +   LF   G+ +V  ++         S + QL +       +
Sbjct: 509 VYEAAGCEI-NLNSPKQIGELLFEKLGLPVVKKTK--TGYSTDVSVLEQLREICGARCEI 565

Query: 280 NRLASSGSAILK-----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                    + K     +  L  A   DG +  T +    + TGR S      QNLP   
Sbjct: 566 PGQLLEYRELQKMASGFVQPLLSAAGGDGLIHSTFESLT-TGTGRLSSRDPNMQNLP--- 621

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393
                                        +R C+I S  G     AD + IE RVLA ++
Sbjct: 622 ---------------------TYSGWGQRIRECLIPSQPGHCFAAADYSQIELRVLAHLS 660

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
           G+   I+ F +  DI+  T A  F  P D V+KE R   K +   L Y       A    
Sbjct: 661 GDPQLIEIFNSDRDIHTETAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSVFGLASRLG 720

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------------------WMQDQY 489
           T  +     +  +   +     + +  + +S                         +D  
Sbjct: 721 TDRNTAFQIMDAYFAALPGVREYMETSKKKSLEFGYTSTLFGRRRPMDEIATGNQTKDHQ 780

Query: 490 PEFAVKDKLIGTACELVKKAWRA 512
              A+   + GTA ++ K A   
Sbjct: 781 KRVAINAPIQGTAADITKIAMNK 803


>gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 567

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   + LG            +LA     PS       ++       
Sbjct: 55  SDASKVVYDAKKTMVAMHR-LGY--TVSGITFDIMLASYLLNPSDSIADFTSVAIRHD-- 109

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 110 -YTEVETDEAVYGKGAKRSTPEESIVAPHLARKAVAIAVLEKRLLDDLEKNEQLALMEDL 168

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D   +  ++  +A   K L+E I  L      +      L +
Sbjct: 169 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 227

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF   G+  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 228 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 287

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 288 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 322

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 323 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 382

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              ++V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 383 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 442

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                  +  S +  ++      A+   + G+A +++KKA 
Sbjct: 443 DIVRFAKEKGYXETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 499


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/514 (14%), Positives = 153/514 (29%), Gaps = 70/514 (13%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            + HN+     +F +        +     + LA     P        AL+      ++  
Sbjct: 381 KILHNAKGAMRVFAEHGW---SVEGVTMDTALAAYLVKPGRRSFDLDALSLEYLHRELAP 437

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                 +   G  +    +           L   +  R  E       R     D E   
Sbjct: 438 AAEADGQLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADLLR-----DMELPT 492

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             L   +   G   D   +  ++++ A   ++  ++          +      L+  LF 
Sbjct: 493 SALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQLQEVLFG 551

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDG 303
              +     ++    +            D  L  +        KL      L + +++DG
Sbjct: 552 ELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADG 611

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T     A+ TGR S      QN+P +                              
Sbjct: 612 RIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------------------------DEGRA 646

Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  ++ F     
Sbjct: 647 IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAASQVFAVEPT 706

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            V  E R   K M   L Y     G ++     A+     +  + +       +      
Sbjct: 707 AVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRAVD 766

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           E+                      +   ++     A+   + GTA ++VK A       +
Sbjct: 767 EARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDSAL 826

Query: 518 L------QLWKDLTEGFACVVQEGGSISARRVAN 545
                  ++   + +     V  G   +A  +  
Sbjct: 827 KDAGLTSRMLLQVHDEIVLEVAPGERATAEELVR 860


>gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22]
 gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22]
          Length = 886

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/499 (15%), Positives = 162/499 (32%), Gaps = 68/499 (13%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L Q L D+ +     +     +   +   +DI ++      +LA       + +N    
Sbjct: 366 PLRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYL---VNNENNSND 419

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L    HL      K  +  + KG   + P D     H+ A     E  K+ +    +  +
Sbjct: 420 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPEDDEFFEHLAAKVAVIEKLKQPLLEKLKDHE 479

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +       E  +  +   +   G +++  ++ +L    A + ++L+  I +       + 
Sbjct: 480 QDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEF-NL 538

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-- 293
                L   LF    +  +  ++    + +    + QL     +         I K+   
Sbjct: 539 NSPKQLGHILFEKLNLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQNT 596

Query: 294 ---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
               L E +  D R+         + TGR S      QN+P +                 
Sbjct: 597 YVKGLLECIQPDSRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT---------------- 639

Query: 351 ETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                        +R   + S  +G      D + +E RVLA ++G++   +AF +G DI
Sbjct: 640 --------DEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYDI 690

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  K F+    D+V+   R   K +   + Y     G +K            +  + 
Sbjct: 691 HAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIDNYF 750

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
           +       + D    ++                      +  ++      A+   + G+A
Sbjct: 751 EQYPQIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSA 810

Query: 503 CELVKKAWRAKHQGVLQLW 521
            +++K A     + + +L 
Sbjct: 811 ADIIKIAMINMQKKLDELH 829



 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K          +VL VHDE++ + P     ++  +   +M   
Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 866 VK--LDVPLIAD 875


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILTDGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 155/504 (30%), Gaps = 72/504 (14%)

Query: 54  PSDLLQY--------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           PS+L +         L D     V HN+     +F +        +     + LA     
Sbjct: 359 PSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEHGW---TIEGVTMDTALAAYLVK 415

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P        AL+      ++    A   +   G+ D    +           L   +  R
Sbjct: 416 PGRRSFDLDALSLEYLHRELAPAAAPDGQLAFGADDGAEAEALMVQARAILDLGEAFEGR 475

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E       R     D E     L   +   G   D + +  ++++ A   ++  ++  
Sbjct: 476 LAEVGAADLLR-----DMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQQAVKEAH 530

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                   +      L+  LF    +     ++    +            D  L  +   
Sbjct: 531 AAAGHEF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTDNELPVIMLR 589

Query: 286 GSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                KL      L + +++DGR+  T     A+ TGR S      QN+P +        
Sbjct: 590 HREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------- 641

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +   G + L+ AD + IE RV+A ++ +    +
Sbjct: 642 -----------------DEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDAGLTE 684

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +GED++ T  A+ F+     V  E R   K M   L Y     G ++     A+   
Sbjct: 685 AFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEAR 744

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             +  + +       +      E+                      +   ++     A+ 
Sbjct: 745 ALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALN 804

Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519
             + GTA ++VK A     + + +
Sbjct: 805 APIQGTAADIVKIAMLNVDRALRE 828


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 132/398 (33%), Gaps = 73/398 (18%)

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G  +D+  + +  +       + +     +             L++ LF   
Sbjct: 491 ILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVLFETL 550

Query: 250 GIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           G+      +           TL +   H  +  L       ++ ++      L  L +AV
Sbjct: 551 GLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQKMKTT------LEGLIKAV 604

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DGR+  T Q    + TGR S      QN+P +                          
Sbjct: 605 GDDGRIHTTFQ-QTMTSTGRLSSTDPNLQNIPIRT------------------------P 639

Query: 360 ASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           A   +RS   + +N + L+ AD + IE RV+A ++ +   I A+ NGED++    AK F+
Sbjct: 640 AGKKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHNYVGAKVFD 699

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            P   V+ E R   K +   L Y     G ++     A      ++ +         + D
Sbjct: 700 VPPSGVTPELRRKVKALSYGLVYGLSAFGLSQQLNIPAGEAKQIMENYFHRFGGVKHYLD 759

Query: 475 WEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
               ++                      +   ++     A+   + GTA +++K A    
Sbjct: 760 TVVTQARKDGYTATLFDRRRYLPELTSTNRATRENAERAALNAPIQGTAADIIKIAMLRI 819

Query: 514 HQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545
           H  +       ++   + +     +  G   + +++  
Sbjct: 820 HHELKKTNAKSRVLLQVHDELVVEIAPGELTTVKKLIE 857



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKL 597
            A+++           K  +  V+  +R+  Y + +     YL   TS     R    + 
Sbjct: 739 EAKQIMENYFHRFGGVKHYLDTVVTQARKDGYTATLFDRRRYLPELTSTNRATRENAERA 798

Query: 598 TENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             N  +Q  + DI+   M         T     ++L VHDE+V E       +V  L  
Sbjct: 799 ALNAPIQGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVVEIAPGELTTVKKLIE 857


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 126/367 (34%), Gaps = 54/367 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            SD +  +  +   +   G  ++ + + +L      E  KL+E+I  L+     +     
Sbjct: 473 YSDIDLPICFILDKMEKVGITVNANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIGSPK 531

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293
            L   LF    +     S            + +L++      DL+L     +       +
Sbjct: 532 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 591

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +L + + +      T     ++ TGR S      QN+P +                    
Sbjct: 592 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPTRS------------------- 632

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+  T 
Sbjct: 633 -----SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + FN    +++ E R   K +   + Y     G AK            ++++    K  
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747

Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             + +  +A +                   H   ++      A+   + GT  +++K A 
Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 807

Query: 511 RAKHQGV 517
               Q +
Sbjct: 808 INLDQEI 814


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 88/534 (16%), Positives = 175/534 (32%), Gaps = 83/534 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +A        +   E +   + LL+Y+  +    + +++     ++       I   
Sbjct: 326 LYGFAIAHGNNCEYISLEDAKNDTALLEYIHTDN-GKIVYDAK---NVYHAWHRNHIAFV 381

Query: 92  RW-ICTSVLARTN-GLPSSLKNACLALNFSEHLTKM----EEGKALIARFCKGSIDSPPY 145
                  + A    G+ S          F   L+K     ++GK  +      +  +   
Sbjct: 382 PVHRDVMLEAFLLDGMISDYDKLAEKYAFDCTLSKEDVFGKKGKPKLVVEEDAAAYAMQC 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               AN  Q  QLF E  ++D    +EL+  +      E  +  +   +   G    ++ 
Sbjct: 442 AENLANIEQ--QLFDELEQKD---MKELYDTI------EMPVVEVLYAMEKEGVHTSVET 490

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           + ++ E   ++ + L+  I +       +      L + L+   G+        T   +L
Sbjct: 491 LQEIAEATGKKIEALNAQIYEYAGMEF-NINSPKQLAVVLYDELGLPCGKK-RSTGADVL 548

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                      L+L +             LS+ +  DG++         ++TGR S    
Sbjct: 549 EKLKPVHPIISLLLEQRKYQKIYSTYAVGLSKHILKDGKIHTIFNQI-QTQTGRLSSSEP 607

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+                                 +R   +AS    L+ AD + IE
Sbjct: 608 NLQNIS------------------------VRDEEGKVIRKAFVASPQHTLMSADYSQIE 643

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442
            R+LA +A E   I+AF  G DI+  T  + F+   D V    R   K +   + Y    
Sbjct: 644 LRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNFGIVYGQSD 703

Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480
            G ++            + ++  +  +  TF D                      ++   
Sbjct: 704 FGLSEQLGITMKEAKRFIDKYFASYPNIKTFMDDTIAFCEENGYVKTMFGRRRYIKEIND 763

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
            +  M++     A+   + G+A +L+K A           + K + +LQ+  +L
Sbjct: 764 KNYMMREFGKRAAMNAPIQGSAADLIKLAMVHIYQTMKEKKVKSRMILQIHDEL 817


>gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023]
          Length = 552

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                V +++    +   +   I    K      +LA     PS   +   ++       
Sbjct: 40  SEETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHD-- 94

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E +   A + KG+  S P +   A H+    +     ++ +    E  ++L  + D 
Sbjct: 95  -YTEVETDEAIYGKGAKRSTPEEDIVAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDL 153

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  +G  +D   +  ++  +A   K L+E I  L      +      L +
Sbjct: 154 ELPLTFVLAQMEMQGVSVDTQRLGNMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 212

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF    +  V  ++    T   +L   +      D IL            +  L +   
Sbjct: 213 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 272

Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++         ++TGR S      QN+P +                          
Sbjct: 273 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 307

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+
Sbjct: 308 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 367

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
              D+V    R   K +   + Y     G ++            + ++  +  +   +  
Sbjct: 368 VEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 427

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                  +  S +  ++      A+   + G+A +++KKA 
Sbjct: 428 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 484



 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M        +      ++L VHDE++ E P+     +  + 
Sbjct: 472 IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIV 524


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 167/529 (31%), Gaps = 86/529 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D       H +    +      G           + LA     P   S     LAL +
Sbjct: 395 LADPGPPKALHEAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRY 451

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                   E             D       +   ++A  +       D E  R     L 
Sbjct: 452 LR-RELRAENPQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL- 509

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            LS  E  +  +   + + G  +DLDL+ +LQ   A + +   E    +    I +    
Sbjct: 510 -LSGMELPVQRVLAGMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSP 567

Query: 239 YALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSA 288
             L+  LF    +     ++                  H  +  L       RL  +   
Sbjct: 568 KQLQAVLFDELQMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT--- 624

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++ L  +V+SDGR+  T     A+ TGR S      QN+P +  +            
Sbjct: 625 ---VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------ 668

Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           R   +  +G  +L+ AD + IE R++A ++ +   I+AF  GED
Sbjct: 669 ------------GRRTRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGED 716

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++    ++AF  PI++V+ E R   K M   L Y     G ++  K         +  + 
Sbjct: 717 LHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYF 776

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   +      ++                      +  +++     A+   + G+A
Sbjct: 777 ARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSA 836

Query: 503 CELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541
            +++K A     + +          LQ+  +L    A   +E     AR
Sbjct: 837 ADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885



 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    K     G    I+L VHDE++ E        +  L  
Sbjct: 832 IQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae]
 gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 142/234 (60%), Gaps = 8/234 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+AF    + V+K
Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            QR IGKVMEL LGY GG   F T A   GLDL + ++            +A S
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHNVKREAIS 234


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 127/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +     +   I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILAYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKTYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPRIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 881

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 94/596 (15%), Positives = 192/596 (32%), Gaps = 87/596 (14%)

Query: 28  AVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF------ 80
             I + A  +   E V  +  T++    S  +  L    V     +S  +  +F      
Sbjct: 324 FEIEMLADNYHTAEQVGFFIGTKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNI 383

Query: 81  --KKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIAR 134
                LG+ +P        +LA     P      L       ++   L + E+       
Sbjct: 384 VAAHRLGLHLP--DIAFDVLLASYLINPDENSNDLGKIAEDHDY-HDLPRDEDV------ 434

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG+    P D                 + D+       ++    +D E  L  +   +
Sbjct: 435 YGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEM 494

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++
Sbjct: 495 EIQGITLNAQTLKDMGTEFSQSIKVLEEKIYG-EAGVKFNLNSPKQLGEVLFEKLNLPVI 553

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
             ++    + +    + +L     + +         KLN+     L +A   D ++    
Sbjct: 554 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPDHKIHTRY 611

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P ++                             +R   +
Sbjct: 612 -LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFV 645

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
            S    ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ +
Sbjct: 646 PSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPD 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474
            R   K     + Y     G A+            +  + +       + +         
Sbjct: 706 MRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKVHDYMENMVKKARED 765

Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----RAKHQGVL 518
                         Q  S +  ++      A+   + G+A +++K A     +A  +  L
Sbjct: 766 GYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAHL 825

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           Q    L      + +   +  A+    VP+++       V + + S     + D K
Sbjct: 826 QAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLAVPLKVESHYGPTWFDAK 881



 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M    K          ++L VHDE++ E P      +G L   +M
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 857


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 147/399 (36%), Gaps = 64/399 (16%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P +              
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 669 -------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     ++FE                          +S +  ++ Q    AV   + GT
Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835

Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEG 535
           A E++KK         K +  + L   + +     V+E 
Sbjct: 836 AAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEEN 874



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 863

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  +        +   +M
Sbjct: 864 HDELIFEVEENSVEKYSEILADIM 887


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/539 (15%), Positives = 161/539 (29%), Gaps = 76/539 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D     V H++     +  +              + LA     P     A  AL+   
Sbjct: 375 LADADRPKVFHDAKGAMRVLAEHGW---SVDGVRMDTALAAYLVKPGRRSFALDALSLEY 431

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              ++    A   +   G+ ++   +           L   +  R  E       R    
Sbjct: 432 LHRELAPAAAADGQLAFGADEAAEAEMLMIQARSILDLGEVFEGRLEEVGAADLLR---- 487

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E     L   +   G   D   +  ++++ A   ++  ++          +      
Sbjct: 488 -DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQ 545

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLS 296
           L+  LF    +     ++    +            D  L  +        KL      L 
Sbjct: 546 LQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTVEGLI 605

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +++DGR+  T     A+ TGR S      QN+P +                       
Sbjct: 606 KTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT---------------------- 642

Query: 357 LGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +   G + L+ AD + IE RV+A ++ +   I+AF +GED++ T  ++
Sbjct: 643 --DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAASQ 700

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F      V  E R   K M   L Y     G ++     A+     +  + +       
Sbjct: 701 VFGVDRSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERFGGVRD 760

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           +      E+                      +   ++     A+   + GTA ++VK A 
Sbjct: 761 YLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAM 820

Query: 511 RAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
               + +       ++   + +     +  G   +   +      V R     V +  P
Sbjct: 821 LNVDRALREADLKSRMLLQVHDEIVLEIAPGERAATEEI------VRREMSGAVQLRAP 873


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 86/526 (16%), Positives = 158/526 (30%), Gaps = 78/526 (14%)

Query: 54  PSDLLQY--------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           PS+L +         L D     V HN+     +F +    D         + LA     
Sbjct: 165 PSELDEADERAWVAWLADAERPKVLHNAKGAMRVFAEH---DWSVAGVSMDTALAAYLVK 221

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           P        AL+      ++    A   +   G+ D    +           L   +  R
Sbjct: 222 PGRRSFDLDALSLEYLGRELAPPAAADGQLAFGADDGAEAEALMVQARAVLDLGSAFEGR 281

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E       R     D E     L   +   G   D   +  ++++ A   ++  ++  
Sbjct: 282 LAEVGAADLLR-----DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAH 336

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                   +      L+  LF   G+     ++    +            D  L  +   
Sbjct: 337 GAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTDNELPVIMLR 395

Query: 286 GSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                KL      L + +++DGR+  T     A+ TGR S      QN+P +        
Sbjct: 396 HREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------- 447

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +   G + L+ AD + IE RV+A ++ +   I+
Sbjct: 448 -----------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIE 490

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +GED++ T  ++ F      V  E R   K M   L Y     G ++     A    
Sbjct: 491 AFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEAR 550

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             +  + +       +      E+                      +   ++     A+ 
Sbjct: 551 ALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALN 610

Query: 496 DKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535
             + GTA ++VK A       +       ++   + +     V  G
Sbjct: 611 APIQGTAADIVKIAMLKVDGALRDAGLASRMLLQVHDEIVLEVAPG 656


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 134/395 (33%), Gaps = 67/395 (16%)

Query: 158 LFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           L  E   +  E     L++++      E  L  +  ++   G++ID + +  L       
Sbjct: 468 LHAELAHQLEEMEMTALYQKI------ELPLIPVLASMESIGFKIDQEQLKNLSAHFEAR 521

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            + L   I +       +   T  L M LF   G+  +  ++    + +    + QL   
Sbjct: 522 IETLTRQIYEEAGQRF-NINSTKQLGMILFEEMGLPPIKKTKTGYSTSVE--VLEQLRPY 578

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +         + KL++     L + V  +  ++         + TGR S      QN+
Sbjct: 579 NTIVDDILEYRTVTKLDSTYGRGLIKLVDPETEKIYSHFN-QTVTATGRISSSDPNLQNI 637

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   + S     LV AD + IE RVL
Sbjct: 638 PVRT------------------------DLGREIRRVFVPSSPMCVLVDADYSQIELRVL 673

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA---- 445
           A +  ++  ++AFA  +DI+  T ++ F  P++ V++EQR+  K +   L Y   A    
Sbjct: 674 AHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIYGKQAFSLG 733

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLW 484
           K      +     +  +         +                         + +S +  
Sbjct: 734 KELGIGRNQAQDYIDMYFSRYPKVYAYMKAIREEAKTKGYVTTLYGRRRYIPEIQSRNRM 793

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           +       A+   + G+A +++K A    +  + +
Sbjct: 794 IVQSGERMALNTPIQGSAADIMKIAMVKVYHRLAK 828



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 594 GGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGT 646
           G ++  N  +Q  + DI+   M        K  +   ++L +HDE++ E P+T       
Sbjct: 798 GERMALNTPIQGSAADIMKIAMVKVYHRLAKESFRSHLLLQIHDELIIEAPETES---EK 854

Query: 647 LCSLMTK 653
           +  L+T+
Sbjct: 855 ILRLLTE 861


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 78/555 (14%), Positives = 178/555 (32%), Gaps = 92/555 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112
             L   L +  +     +     +   +   +D+  +      +LA        +S    
Sbjct: 365 KPLKDILENRKIQKDVFDLKRMTVGLHR---LDVIVEGLNYDMLLASYLVNNEKNSNDLG 421

Query: 113 CLALNFSEHLTK-----MEEGKALIARFCKGSIDSPPYDC--TRANHVQAWQLFGEYCKR 165
            +A  + E+  K       +GK       K                  +  +   E+ + 
Sbjct: 422 EIAHLYDEYSIKTDLEVYGKGKKQAIPEDKEFFKHLAAKVCVIEKLKPELLKQLKEHEQD 481

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D+  T E+                +   +   G +++   +++LQ   A + K+L++ I 
Sbjct: 482 DLFETIEI------------PTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIY 529

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
           K       +      L   LF    + ++  ++     +++ +      + +  +++  R
Sbjct: 530 KQAGEEF-NLNSPKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYR 588

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +   +   +  L + +  DGR+         + TGR S      QN+P +        
Sbjct: 589 QIAKIQST-YVKGLLDVIQRDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------- 639

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                 +R   +    +G      D + +E RVLA ++G+    
Sbjct: 640 -----------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQ 681

Query: 400 KAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           +AF  G DI+  T  + F+    D+V+   R   K +   + Y     G +K        
Sbjct: 682 EAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKR 741

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFA 493
               +  + +       + D    E+                         ++      A
Sbjct: 742 AKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTA 801

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +   + G+A +++K A       + +   +L      V+Q    +    + +VP+  +  
Sbjct: 802 INSPIQGSAADIIKIAMI----NMQKKLDELHLKTKMVIQ----VHDELIFDVPKDELET 853

Query: 554 HKRDVHIVLPSSRRL 568
            K+ V  ++ S+ +L
Sbjct: 854 IKKIVPEIMQSAVKL 868



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593
           IS +R          ++   K  +   +  +R   Y++       YL    ++    R++
Sbjct: 737 ISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKFTVRSF 796

Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
             +   N  +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  
Sbjct: 797 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKK 856

Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673
           +   +M         +PL A+ G+    Y
Sbjct: 857 IVPEIMQSAVK--LDVPLIADSGWGHNWY 883


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQSKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 102/602 (16%), Positives = 190/602 (31%), Gaps = 123/602 (20%)

Query: 5   FIDIETRS----PQPLPK-----VGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSAMP 54
             D ET S       +        GV +Y         A+ +     ++ ++  +     
Sbjct: 333 SFDTETTSLEVRSAKIVGFSFSVNGVDSY-----YVPIAHNYLGVEEQVSYECAK----- 382

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPSSLKNAC 113
            + ++Y+     + + HN  ++  + K      +    +   + +LA             
Sbjct: 383 -EFIEYIFGCKYV-IGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLL--------QS 432

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRE 172
            AL   + L K          F    I        + N  Q   Q   EY   D  A  +
Sbjct: 433 DALCNLDFLMK--------KYFNHEMIHYKDIVHKKENFSQILIQYACEYASEDAAACYQ 484

Query: 173 LFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L+ +L  L D          E         +   G +IDL+   +L     +   ++ E+
Sbjct: 485 LYFKLKGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQISEE 544

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS--------HSNITQLAK 275
           I  L +    +      L   LF    +     ++    +  S        H  I ++ +
Sbjct: 545 IFALANKRF-NLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPKILE 603

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
                +L S+      +  LSE   +D   R+  +    G + TGR S      QN+P  
Sbjct: 604 YREFFKLYSTY-----IEPLSEHAKADLQHRIYTSFMQTG-TSTGRLSSKNPNLQNIP-- 655

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     LV  D + IE R+LA  +
Sbjct: 656 ----------------------VKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFS 693

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFK 449
            ++  I+AF    DI++ T  K F    + +++E+RAI K +   L Y  G K      K
Sbjct: 694 EDEAMIEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINFGLIYGMGPKKLSETLK 750

Query: 450 TMASHCGLDLQQFSQNVKSTSTF--------------------EDWEQAESHHLWMQDQY 489
                    +Q +  +  +   F                          E    + +  +
Sbjct: 751 ITFQEAKTYIQNYFTSFPTVKEFLKNQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAF 810

Query: 490 PEFAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
               +     G+A +++K A  A      + + +LQ+  +L       + +  S    ++
Sbjct: 811 LREGINAIFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEAPKEIAKKESEEIAKI 870

Query: 544 AN 545
             
Sbjct: 871 ME 872



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
           I Q  + DI+   M   TK      ++L VHDE++ E P          +  +M
Sbjct: 818 IFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEAPKEIAKKESEEIAKIM 871


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 117/375 (31%), Gaps = 58/375 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG 516
           A +++K A     + 
Sbjct: 804 AADILKIAMINLDKA 818


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 133/398 (33%), Gaps = 73/398 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  L  +   +   G  +D D +  L+     + ++   D  +   G   +     
Sbjct: 485 LRDIELPLVDILGAMERTGIAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPK 544

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L+  LF   G+     ++              +   H  +  + +     RL  +    
Sbjct: 545 QLQTVLFETLGLPKTRRTKTGYTTDADALTDLYAKTQHPFLEAMLRHRDAMRLRVT---- 600

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L ++V+ D R+  T     A+ TGR S      QN+P +  +             
Sbjct: 601 --VEGLIKSVAEDQRIHTTYIQTIAA-TGRLSSTDPNLQNVPIRTEA------------- 644

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +   G + L+ AD + IE R++A ++G++  I+AF  GED+
Sbjct: 645 -----------GRRIREVFVVGKGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDL 693

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    A+ F    + V+ E R+  K M   L Y     G +K            + ++  
Sbjct: 694 HRFVGARVFGVEPEDVTAEMRSKVKAMSYGLAYGLSAFGLSKQLTISTGEAQGLMDEYFA 753

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
                  +      E+                      +   ++     A+   + G+A 
Sbjct: 754 RFGGVRDYLREVVGEARATGYTATMLGRRRYLPDLTSDNRQRREGAERMALNAPIQGSAA 813

Query: 504 ELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535
           +++K A +     +       ++   + +     V EG
Sbjct: 814 DIIKLAMKGVDSALRESGAKSRMLLQVHDELVLEVAEG 851



 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 95/284 (33%), Gaps = 39/284 (13%)

Query: 396 DWKIKAFANGEDIYVT----TYAK---------AFNTPIDKVSKEQRAIGKVMELALGYQ 442
           +  IK+ A  + I+ T      A            N PI   ++  R I +V  +  GY+
Sbjct: 602 EGLIKSVAEDQRIHTTYIQTIAATGRLSSTDPNLQNVPIR--TEAGRRIREVFVVGKGYE 659

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                  +      ++++  +         E +   E  H +         V  ++ G  
Sbjct: 660 SLMSADYS-----QIEMRIMAHLSGDEGLIEAFRTGEDLHRF---------VGARVFGVE 705

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIV 561
            E V    R+K + +          F    Q   S   A+ + +         +  +  V
Sbjct: 706 PEDVTAEMRSKVKAMSYGLAYGLSAFGLSKQLTISTGEAQGLMDEYFARFGGVRDYLREV 765

Query: 562 LPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK 619
           +  +R   Y + + G   YL   TS   + R    ++  N  +Q  + DI+   MK    
Sbjct: 766 VGEARATGYTATMLGRRRYLPDLTSDNRQRREGAERMALNAPIQGSAADIIKLAMKGVDS 825

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
                     ++L VHDE+V E  +     V  L  + M +   
Sbjct: 826 ALRESGAKSRMLLQVHDELVLEVAEGERDDVEALVRAEMGRAVE 869


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 94/620 (15%), Positives = 199/620 (32%), Gaps = 117/620 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S   +               L   +   +        E   +P +     
Sbjct: 322 KYISIDTET-SSLDIYTA-----------RLIGISISFKE------FEGYYIPIEAKGKI 363

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 364 YIEKHYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 421

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
            +    LA  +  H   K E+       F   S++    Y    A+   + + +F +  K
Sbjct: 422 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNIFTKKLK 481

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D      L K    + + E     +   + + G  +D + + +  + + QE + ++ +I
Sbjct: 482 ED-----GLDKL---MHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 533

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277
           +K + GI  +      +   LF    + L +  +     I         H +I  + K  
Sbjct: 534 IK-SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 592

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            + +L S+ +     + L E ++    RL  +      + TGR +      QN+P     
Sbjct: 593 QIAKLKSTYT-----DNLIELINHKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 641

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R      NG   + AD + IE  +LA ++ ++
Sbjct: 642 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 682

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             IKAF N +DI+  T +K F     +++ + R I K +   + Y+      AK      
Sbjct: 683 ALIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDFRLAKELGITK 742

Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491
                 +  +  +      F                        ++  S++   +     
Sbjct: 743 EEAKGFINSYFDSYPKIKEFITNQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAER 802

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + G+A +++K A        ++++ +  +      +    +    +   P    
Sbjct: 803 IAINSIIQGSAADIMKIAM-------VRVFNEF-KSKKMESKILLQVHDEMLIESPIKEK 854

Query: 552 RRHKRDVHIVLPSSRRLVYS 571
              ++ + I++ ++  L   
Sbjct: 855 NEVEKILKIMMETAYTLNLP 874



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             +I+Q  + DI+   M          K    I+L VHDE++ E+P      V  +  +M
Sbjct: 805 INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLIESPIKEKNEVEKILKIM 864

Query: 652 TKNPSWAKGLPLKA 665
            +  ++   LPL+A
Sbjct: 865 MET-AYTLNLPLRA 877


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 149/407 (36%), Gaps = 64/407 (15%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P +              
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 669 -------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     ++FE                          +S +  ++ Q    AV   + GT
Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835

Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           A E++KK         K +  + L   + +     V+E       R+
Sbjct: 836 AAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEESSVEKYSRI 882



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 863

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  ++       +   +M
Sbjct: 864 HDELIFEVEESSVEKYSRILADIM 887


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 83/548 (15%), Positives = 170/548 (31%), Gaps = 108/548 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD----LLQYLRDETVMCVAHNSLFE 76
           E   +   ++ ++++                 +  +     ++ + +  V  V HN  F+
Sbjct: 346 ENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQEDAKIAIKKIFNSRV--VGHNIKFD 403

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
                + LG +     +  + +LA      S+L    L+    EH               
Sbjct: 404 LHFVIRFLG-EGELDIFADSMILAWLINPESALSLDKLSEKLLEHKMITF---------- 452

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------------DG 183
           K S+       + A      +    Y   D   T  L+   + +              + 
Sbjct: 453 KESVKKGETFASVAL-----EEACNYAAEDAYITLRLYYLFLEMLKDQGAEHLIEEAKEV 507

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E         +   G  ++   + +          +L + I +L      +   T  L  
Sbjct: 508 EFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSELTKKIYELASLEF-NINSTQQLGN 566

Query: 244 YLFLITGIDLVDMSEGTLKS--------ILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
            LF   G+     ++    +        +  H  I  L +   + +L S+      +  L
Sbjct: 567 VLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHEIIPYLLEYREVYKLYSTY-----IEPL 621

Query: 296 SEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +    D   R+  +    G + TGR S      QN+P +                    
Sbjct: 622 LKLSQQDKESRIHTSFVQTGTT-TGRLSSKNPNLQNIPTRT------------------- 661

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +A  GKKL+  D + IE R+LA    +   ++AF   +DI++ T 
Sbjct: 662 -----ALGTKIREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDKDIHMQTA 716

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKST 469
              F    ++ +  +R + K +   L Y  G K      K   +     ++++  +  S 
Sbjct: 717 IALFG---EEDAPLKRNVAKTVNFGLLYGMGQKKLSETLKITTAEAKEIIERYFSSFPSV 773

Query: 470 STF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            ++                      +   ES     +  Y   AV     G+A +++K +
Sbjct: 774 KSYFRSIVDFSKEAGYVETLLKRRRYFDYESASPMFRAAYEREAVNSIFQGSASDIIKLS 833

Query: 510 WRAKHQGV 517
               H+ +
Sbjct: 834 MNKIHKLI 841



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           K L+E       E   I  R  ++ P  V    +  V     +         +    Y +
Sbjct: 746 KKLSETLKITTAEAKEIIERYFSSFP-SVKSYFRSIVDFSKEAGYVETLLKRR---RYFD 801

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSE 635
             ++  M    Y  +   +I Q  + DI+   M          K    ++L +HDE++ E
Sbjct: 802 YESASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKMLLQIHDELIFE 861

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKA 665
              +    +     ++M         +PLKA
Sbjct: 862 VDTSEAEILGEKFKNIMQNIMP--LNIPLKA 890


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 94/620 (15%), Positives = 199/620 (32%), Gaps = 117/620 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S   +               L   +   +        E   +P +     
Sbjct: 341 KYISIDTET-SSLDIYTA-----------RLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKHYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
            +    LA  +  H   K E+       F   S++    Y    A+   + + +F +  K
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNIFTKKLK 500

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D      L K    + + E     +   + + G  +D + + +  + + QE + ++ +I
Sbjct: 501 ED-----GLDKL---MHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 552

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277
           +K + GI  +      +   LF    + L +  +     I         H +I  + K  
Sbjct: 553 IK-SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 611

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            + +L S+ +     + L E ++    RL  +      + TGR +      QN+P     
Sbjct: 612 QIAKLKSTYT-----DNLIELINHKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 660

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R      NG   + AD + IE  +LA ++ ++
Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             IKAF N +DI+  T +K F     +++ + R I K +   + Y+      AK      
Sbjct: 702 ALIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDFRLAKELGITK 761

Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491
                 +  +  +      F                        ++  S++   +     
Sbjct: 762 EEAKGFINSYFDSYPKIKEFITNQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAER 821

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + G+A +++K A        ++++ +  +      +    +    +   P    
Sbjct: 822 IAINSIIQGSAADIMKIAM-------VRVFNEF-KSKKMESKILLQVHDEMLIESPIKEK 873

Query: 552 RRHKRDVHIVLPSSRRLVYS 571
              ++ + I++ ++  L   
Sbjct: 874 NEVEKILKIMMETAYTLNLP 893



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             +I+Q  + DI+   M          K    I+L VHDE++ E+P      V  +  +M
Sbjct: 824 INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLIESPIKEKNEVEKILKIM 883

Query: 652 TKNPSWAKGLPLKA 665
            +  ++   LPL+A
Sbjct: 884 MET-AYTLNLPLRA 896


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 162/439 (36%), Gaps = 68/439 (15%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  K+++ I +     
Sbjct: 504 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEE 560

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 561 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 619

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  +    G + TGR S      QN+P +              
Sbjct: 620 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD----------- 667

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   IA  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 668 -------------GIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 714

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN P  + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 715 LHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 774

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     +TFE                          +S +  ++ Q    AV   + GT
Sbjct: 775 FEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 834

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A E++KK        V  + KD  +     +     +    +  V +  + ++   +  +
Sbjct: 835 AAEVLKKVMVK----VYDILKDKED-----IALLLQVHDELIFEVEKNSVEKYSGILADI 885

Query: 562 LPSSRRLVYSDVKGDCSYL 580
           + ++ +L    +  + +  
Sbjct: 886 MKNTVQLEDVKLNININIG 904



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 803 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQV 862

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E           +   +M
Sbjct: 863 HDELIFEVEKNSVEKYSGILADIM 886


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 136/385 (35%), Gaps = 72/385 (18%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D E  L  +   +   G  ID D++  +   +A ER +   ++     G + +      
Sbjct: 486 TDVEIPLTRVLTDMEIHGVAIDRDVLAAIGTELATERDRALAEVRHYAGGEL-NPNSPRQ 544

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNRLASSGSAILKL 292
           L + LF   G+     ++    T   +L      H  +  + +   L++L S+       
Sbjct: 545 LAVVLFERLGLPAGRKTKTGYSTDARVLESLRDAHPIVAAILRFRELDKLLSTF-----Y 599

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L   + +DGR+  T      +RTGR S      QN+P +                   
Sbjct: 600 EGLRSEIGADGRIHATFN-QAVARTGRISSERPNLQNIPVRT------------------ 640

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                       R   +A+ G  LV AD + IE RVLA ++G++  ++  +   D++   
Sbjct: 641 ------DEGKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTLV 694

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            A+ F  P ++V+ +QR++ K++   L Y     G A+      +     L  F      
Sbjct: 695 AARVFGVPAERVTPQQRSVAKMVTYGLSYGMEAYGLAQRLGVPPAEAEGILADFFAAFPG 754

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + D                         +S +  ++      A+     G A ++ K
Sbjct: 755 LRHYRDASVDAARAQGFTTTLLGRRRYLPDLDSPNRTVRQGAERQAMNAGTQGLAADIFK 814

Query: 508 KAWRAKHQG--------VLQLWKDL 524
            A    H          VLQ+  ++
Sbjct: 815 IALVRLHAALSPTDGALVLQVHDEV 839


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 125/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRTTLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G+   I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDKHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 162/439 (36%), Gaps = 68/439 (15%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  K+++ I +     
Sbjct: 504 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEE 560

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 561 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 619

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  +    G + TGR S      QN+P +              
Sbjct: 620 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD----------- 667

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   IA  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 668 -------------GIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 714

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN P  + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 715 LHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 774

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     +TFE                          +S +  ++ Q    AV   + GT
Sbjct: 775 FEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 834

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A E++KK        V  + KD  +     +     +    +  V +  + ++   +  +
Sbjct: 835 AAEVLKKVMVK----VYDILKDKED-----IALLLQVHDELIFEVEKNSVEKYSGILADI 885

Query: 562 LPSSRRLVYSDVKGDCSYL 580
           + ++ +L    +  + +  
Sbjct: 886 MKNTVQLEDVKLNININIG 904



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 803 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQV 862

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E           +   +M
Sbjct: 863 HDELIFEVEKNSVEKYSGILADIM 886


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 147/399 (36%), Gaps = 64/399 (16%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 562 F-NINSPKQLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P +              
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 669 -------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     ++FE                          +S +  ++ Q    AV   + GT
Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835

Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEG 535
           A E++KK         K +  + L   + +     V+E 
Sbjct: 836 AAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEEN 874



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 863

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  +        +   +M
Sbjct: 864 HDELIFEVEENSVEKYSEILADIM 887


>gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 135/402 (33%), Gaps = 69/402 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D +  L  +   +   G  I+     + ++ +  +  +L   + K +   + +      +
Sbjct: 482 DIDNKLTPVLAAMEYEGVHINKAFFSEYEKELQTKLDELQASVDKFSKEPV-NLNSPKQV 540

Query: 242 RMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
            + LF    + +   ++       ++   L+   ++++   ++  R      +   +  +
Sbjct: 541 GVLLFEELELPVGKKTKTGYSTDSSVLEDLAAKGLSEVPALILEYREVGKILST-YVKAI 599

Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
            E ++   G++        A+ TGR S      QN+P +                     
Sbjct: 600 PELLNEASGKIHTHFNQNVAA-TGRLSSNHPNLQNIPIRS-------------------- 638

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    VR   IA  GK L+ AD + +E R+LA  + +   I AF  G DI+  T +
Sbjct: 639 ----ELGRRVRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTAS 694

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           +    P+++V    R+  K +   L Y     G A   K         +  + +   S  
Sbjct: 695 EIMGVPVEEVGSNDRSKAKAVNFGLMYGQSSFGLAAALKIPRKEAKEYITNYFERFSSVK 754

Query: 471 TFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + D  + E                     S +  ++      A+   + GTA +++K A
Sbjct: 755 GYLDHLKEECEKTGYAITLKGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLA 814

Query: 510 WRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                        K + +LQ+  +L         E      +
Sbjct: 815 MINIQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKTILK 856



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVL 626
           KG   YL    S     +    ++  N  +Q  + DI+   M N  K          ++L
Sbjct: 774 KGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLAMINIQKVLDDKKLKSKMIL 833

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLM 651
            VHDE++ E  ++    +  + +++
Sbjct: 834 QVHDELIFEVVESE---LEEMKTIL 855


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/597 (16%), Positives = 183/597 (30%), Gaps = 86/597 (14%)

Query: 16  LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNS 73
           L  VG   AY   A       A  D   +  D T         L   L D       H +
Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKAL 131
               +      G           + LA     P   S     L+L +        +  A 
Sbjct: 415 K---LAMHDLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLR-RELRADNPAQ 470

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                    D       +   ++A  +       D E  R     L  L   E  +  + 
Sbjct: 471 QQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVL 528

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  +D+D + +LQ   A   +   E    +    I +      L+  LF    +
Sbjct: 529 AEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELEM 587

Query: 252 DLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                ++                  H  +  L       RL  +      ++ L  +V+S
Sbjct: 588 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAS 641

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  T     A+ TGR S      QN+P +  +                         
Sbjct: 642 DGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------------------G 676

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +  +G   ++ AD + IE R++A ++ +   I+AF  GED++    ++AF+ P
Sbjct: 677 RRIRDAFVVGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVP 736

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474
           ID+V+ + R   K M   L Y     G A   K       + + Q+         +    
Sbjct: 737 IDEVTPDLRRRVKAMSYGLAYGLSAYGLAAQLKISTEEAKVQMDQYFARFGGIRDYLRDV 796

Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                + +S +  +++     A+   + G+A +++K A     Q
Sbjct: 797 VDQARKDGYTSTVFGRRRYLPELDSSNRNVREAAERAALNAPIQGSAADIIKVAMIDVDQ 856

Query: 516 GVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            +       ++   + +     V +G   +  ++              + + +   R
Sbjct: 857 AIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSAYALDVPLEVSVGYGR 913


>gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 94/596 (15%), Positives = 192/596 (32%), Gaps = 87/596 (14%)

Query: 28  AVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF------ 80
             I + A  +   E V  +  T++    S  +  L    V     +S  +  +F      
Sbjct: 324 FEIEMLADNYHTAEQVGFFIGTKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNI 383

Query: 81  --KKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIAR 134
                LG+ +P        +LA     P      L       ++   L + E+       
Sbjct: 384 VAAHRLGLKLP--DIAFDVLLASYLINPDENSNDLGKIAEDHDY-HDLPRDEDV------ 434

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG+    P D                 + D+       ++    +D E  L  +   +
Sbjct: 435 YGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEM 494

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++
Sbjct: 495 EIQGITLNAQTLKDMGTEFSQSIKVLEEKIYG-EAGVKFNLNSPKQLGEVLFEKLNLPVI 553

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
             ++    + +    + +L     + +         KLN+     L +A   D ++    
Sbjct: 554 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPDHKIHTRY 611

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P ++                             +R   +
Sbjct: 612 -LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFV 645

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
            S    ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ +
Sbjct: 646 PSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPD 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474
            R   K     + Y     G A+            +  + +       + +         
Sbjct: 706 MRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKVHDYMENMVKKARED 765

Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----RAKHQGVL 518
                         Q  S +  ++      A+   + G+A +++K A     +A  +  L
Sbjct: 766 GYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAHL 825

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           Q    L      + +   +  A+    VP+++       V + + S     + D K
Sbjct: 826 QAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLAVPLKVESHYGPTWFDAK 881



 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M    K          ++L VHDE++ E P      +G L   +M
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 857


>gi|297626697|ref|YP_003688460.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/552 (16%), Positives = 168/552 (30%), Gaps = 75/552 (13%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A+A   +     D  E +      L   L D       H +    +         +   
Sbjct: 347 LAFATTSDDAACVDVPELTPDDEKALAAWLTDPQATKAMHGAKGPLLAL---WARQLDLA 403

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                + LA     P   S     LAL       ++++ + +         +  P +   
Sbjct: 404 GLDSDTQLAAYLLRPDQRSYDLDDLALRHLGRELRVQDSEQVNQETLDFGSERQPAETAM 463

Query: 150 ANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                  +L G      D  + R L   L      E  L  +   +  RG  ID+D++ +
Sbjct: 464 LRARAIAELAGVLDGELDDTSQRGLLHSL------EMPLERVLARMEQRGVAIDMDVLDQ 517

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L+       +  ++         I +      L+  LF    +     ++    +     
Sbjct: 518 LRSEYDARVQAAEQAAFAAIGTQI-NLGSPKQLQAVLFDQLDMPKTKRTKSGYTTDADAL 576

Query: 269 NITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                           +    +KL    +TL ++ S DGR+  T     A  TGR S   
Sbjct: 577 EKLYQKTRHPFLEHLLAYRDTIKLRQIIDTLIKSTSDDGRIHTTYVQTVAG-TGRLSSTD 635

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAG 383
              QN+P +                              +R   +   G + L+ AD + 
Sbjct: 636 PNLQNIPIRT------------------------PEGRRIRDAFVPGEGFEGLMSADYSQ 671

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE RV+A  +G+   I AFA+G D +  T +  F+ P+++V+  QR+  K M   L Y  
Sbjct: 672 IEMRVMAAASGDKTLIHAFASGADFHSMTASHVFDVPVEQVTPAQRSSVKQMNYGLAYGL 731

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
              G +             + Q+ Q       + D                         
Sbjct: 732 SAYGLSSRLNVSVPEARALMDQYFQTFGPVRDYLDSLVEKARKQGYTETMLGRRRYLPDL 791

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVV 532
            S +   +      A+   + GTA +++K A     Q         ++   + +     V
Sbjct: 792 NSSNRQRRQMAERMALNAPMQGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEV 851

Query: 533 QEGGSISARRVA 544
             G     +++ 
Sbjct: 852 AAGERDRVQQIV 863



 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 603 QAISRDILCEGMKNAT----KNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           Q  + DI+   M         +G    ++L +HDE+V E        V  + 
Sbjct: 812 QGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRVQQIV 863


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 396 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 454

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 455 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 514

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 515 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 558

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 559 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 609

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 610 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQSKSYIDTY 669

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 670 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 729

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 730 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 779


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGAD 683

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803

Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A     +         ++   + +     V      + +++  
Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 137/396 (34%), Gaps = 72/396 (18%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  +  +   +   G +I+   V ++ + + +  K+++  I         +      L
Sbjct: 388 EIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFDYCKEEF-NLNSPKQL 446

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNIT-----QLAKDLILNRLASSGSAILKLN 293
              LF   G++    ++    T +  L           +L   ++  R  S   +   LN
Sbjct: 447 SFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRELSKLKSTYTLN 506

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L   ++ D R+  T +  G + TGR S      QN+P                      
Sbjct: 507 -LLNYMADDKRIHTTFKQTG-TATGRISSINPNLQNIPVGSI------------------ 546

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R C  A  G + V  D + IE R+LA ++ ++  I AF N EDI+  T 
Sbjct: 547 ------YGKRIRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTA 600

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
            + F    ++V  + R + K +   + Y     G A+      S   + ++++       
Sbjct: 601 KEIFGV--EEVDPKHRRLAKAVNFGIIYGLSPYGLARDTGITQSEAKVFIERYFNLYPGV 658

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             + D                      +   S +  ++ +    A+   + G+A +++K 
Sbjct: 659 KNYIDSIIKEAKEKGYTETILGRKRFIKDINSANRMLKQRAERIAINAPIQGSAADIIKL 718

Query: 509 AWRAKH----------QGVLQLWKDLTEGFACVVQE 534
           A    +          + +LQ+  +L       + E
Sbjct: 719 AMINIYKYLQKTQIDVKMILQIHDELLFEVKEDIVE 754


>gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 141/234 (60%), Gaps = 8/234 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+KAF+      G+D+Y   YA+AFN     V+K
Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            QR IGKVMEL LGY GG   F T A   GL+L + ++            +A S
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAALPNIPHNVKREAIS 234


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 137/463 (29%), Gaps = 78/463 (16%)

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-------- 182
           L A     +  + P    R    + W             T  L + L PL D        
Sbjct: 466 LYAYLLDPANTNMPVVAKRYLD-REWPA---DAPTRAAITGHLVRELPPLLDDARRKMYD 521

Query: 183 -GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L  +   +  RG ++D D +  L          L+  I +         R    L
Sbjct: 522 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEF-HIRSPKQL 580

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+    +     ++ T +   + S +  L     +  L      + KL     + + 
Sbjct: 581 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIP 640

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             V+   GRL  T     A  TGR S      QN+P +                      
Sbjct: 641 NLVNPHTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRS--------------------- 678

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+
Sbjct: 679 ---ELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQ 735

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471
                   V   QR   K +   + Y   A           +     ++ +         
Sbjct: 736 VLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEIYFATYPGIRR 795

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                          S +   ++     A    + GTA +++K A 
Sbjct: 796 YINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQGTAADIMKLAM 855

Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
                         +LQ+  +L         E  +   ++V  
Sbjct: 856 VQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVME 898


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/528 (15%), Positives = 182/528 (34%), Gaps = 76/528 (14%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68
                 +   G+  + E+  I L   A ++ PV ++D      + +   L + L DE ++ 
Sbjct: 1263 YCGLDMETTGLEVFGEK--IRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1320

Query: 69   VAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            +  N  F+ + L      I      +I + +L +   +     N  +    S +L K ++
Sbjct: 1321 IIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQ 1380

Query: 128  GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                       +        +        +L+ +  ++      ++      ++D E   
Sbjct: 1381 NSVWNNSLLNNNQLFYAARDSSC----LLKLYKKLSEQITAENMQI------VNDIENKC 1430

Query: 188  WLLDQTINDRGYRIDLDLV-LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
             L    +   G ++DL+ +     +++ +   + D+   +L +  I +      +   L 
Sbjct: 1431 ILPICDMELNGIKVDLESLNKSTDQILNELNVERDKLKKELKNDDI-NVNSQQQILKALQ 1489

Query: 247  LITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                 DL      + S+  LK+ ++H+ +  L     L +L S+         L   ++ 
Sbjct: 1490 DNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAF-----YLKLPLHINK 1544

Query: 302  -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
               ++  T      + +GR+S      Q +PRQ                           
Sbjct: 1545 KTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ--------------------------- 1576

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               +R   I +     ++AD   IE ++ A I  ++  +KA+ N  D++  T +      
Sbjct: 1577 -KNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKG 1635

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAE 479
            I++++KE R + K +   L Y       +T A+          Q      S FE ++   
Sbjct: 1636 INEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLS 1695

Query: 480  SHHLWMQDQYP------------------EFAVKDKLIGTACELVKKA 509
              H  ++                        A+   + GT  +++K A
Sbjct: 1696 RWHNSVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADILKLA 1743



 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 550  VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
             +  +          SR            Y   +  +++       K     VQ    DI
Sbjct: 1680 CLYFYNSFFEHYKGLSRWHNSVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADI 1739

Query: 610  LCEGM----KNATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
            L   +    KN       I+L VHDEI+ E        ++  L   M
Sbjct: 1740 LKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVESM 1786


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 201/621 (32%), Gaps = 128/621 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID ET    PL +           I L   A    PV + D    +      L+ L
Sbjct: 35  RVIGIDTETTGLDPLTER----------IRLIQIAAPQHPVIIVDLAALADSELSPLKAL 84

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + + + V  N  F+  + +      +         +LA                     
Sbjct: 85  LNSSALKVFQNGKFDWQVLEMA---GLRPSGPFFDVMLASQV--------------LRSG 127

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL---- 177
           L K  + ++L   F    +D        A  + A QL  EY   D     +L  RL    
Sbjct: 128 LKKDHDLQSLTFEFLGIKLDKSLQSSNFAGKLSASQL--EYAALDAAVLLKLRARLHSKL 185

Query: 178 -----IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                +  +  E         +   G  +D++    + E +  +++    ++VK      
Sbjct: 186 RSAGLLETAKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVKAGLKPA 245

Query: 233 R--------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
                          + R +  +   L     I +   S+           +  +A+   
Sbjct: 246 PSAQLSLFPDMVETINPRSSVQVLSAL-QALNIPIKSTSKS---------ELIPIARQYP 295

Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           + +L  +   +  L       L + +    GR+  + +  GA R+GR+S      QN+PR
Sbjct: 296 VIQLLLNYRKLASLCSNFAEALPKHIHQITGRIHPSYRQCGA-RSGRFSCKQPNLQNVPR 354

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R+C IA  G +++ AD + IE R++A I
Sbjct: 355 N-------------------------CTVKGMRACFIAPPGYQIIKADYSQIELRIVAEI 389

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + A+  GED++  T +      +++V+ E R I K +   L Y  GA   +  A
Sbjct: 390 SGDAKMLDAYVKGEDLHTLTASLITGKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYA 449

Query: 453 ----------SHCGLDLQQFSQNVKSTSTFED--------------WEQAESHHLWMQDQ 488
                            ++F Q       + D                       W +  
Sbjct: 450 EEKYDVLLTLEEAKEFRKRFFQAYSGVKRWHDSIRRTVYVKDIKQIRTIGGRRRRWAKKP 509

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                +   + GT+ +++K A       + +L+K L +  A ++     +    +   P+
Sbjct: 510 RLSELLNHPVQGTSADMLKVA-------IARLFKLLPKTGAKLI---AVVHDEILLECPQ 559

Query: 549 LVMRRHKRDVHIVLPSSRRLV 569
             ++R    +  V+  +  L 
Sbjct: 560 TTLKRTSCILKKVMVEAGELY 580



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-- 601
               +   + +   V     S RR VY         +     +  ++     +L+E +  
Sbjct: 463 KEFRKRFFQAYSG-VKRWHDSIRRTVYVKDIKQIRTIGGRRRRWAKK----PRLSELLNH 517

Query: 602 -VQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTP 640
            VQ  S D+L   +        K G  ++  VHDEI+ E P T 
Sbjct: 518 PVQGTSADMLKVAIARLFKLLPKTGAKLIAVVHDEILLECPQTT 561


>gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 181

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 3/177 (1%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AY+++  PVK+WD T+   MP+DL  YL D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++  K L ID+P  R   T V A  +GLP +L + C   N +   
Sbjct: 64  PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            K +EGKALI  FCK    +S     T   H + W  F  Y   D+ A RE+++ L 
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLP 180


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/534 (16%), Positives = 185/534 (34%), Gaps = 88/534 (16%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLA--RTNGLPSSLKNA 112
           + +  L +  V+ + HN  ++  +          S      + +LA    + +P +L + 
Sbjct: 376 EFINSLFNAKVV-IGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPCNLDDL 434

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATR 171
            +A  F   +   ++       F +  I++   Y C  A     +QLF +      ++ +
Sbjct: 435 -MARYFKHTMIAFKDIIKKGENFSQLPIENAFTYACEDA--AACYQLFFKINSLLPKSLQ 491

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+        + E         +   G +I++     L+  + ++ + L ++I  L +  
Sbjct: 492 EVAN------NVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEIYTLANKR 545

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS--------HSNITQLAKDLILNRLA 283
             +      L + LF    +     ++  L +  S        H  I ++ +   L +L 
Sbjct: 546 F-NLNSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPIIPKVLEYRELFKLY 604

Query: 284 SSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           S+      +  L E  S D   ++  +    G + TGR S      QN+P          
Sbjct: 605 STY-----IEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIP---------- 648

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   IA  G  L+  D + IE R+LA  + +   I+A
Sbjct: 649 --------------VKTQQGRRIREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEA 694

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGL 457
           F    DI++ T  K F    +++++E+R++ K +   L Y  GA+      +        
Sbjct: 695 FHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLIYGMGARKLSETLQINHQEAKS 751

Query: 458 DLQQFSQNVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDK 497
            +Q + Q+  +   F                          E+   + +  +    +   
Sbjct: 752 YIQNYFQSFPTVKNFLKEQEEFILKNGYSLTLLGRMRKFSFENIQEFQKVAFLREGINAI 811

Query: 498 LIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
             G+A +++K A     Q       +LQ+  +L       + E  +    ++  
Sbjct: 812 FQGSAADIIKLAMIQITQEKLESKLLLQMHDELIFEAPKNIAETEAKKIAQIME 865



 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 601 IVQAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
           I Q  + DI+   M      K    ++L +HDE++ E P          +  +M
Sbjct: 811 IFQGSAADIIKLAMIQITQEKLESKLLLQMHDELIFEAPKNIAETEAKKIAQIM 864


>gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage]
          Length = 234

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 142/234 (60%), Gaps = 8/234 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+AFN     V+K
Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            QR IGKVMEL LGY GG   F T A   GLDL + ++        +   +A S
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHKVKREAIS 234


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 151/409 (36%), Gaps = 73/409 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G ++D+  + ++++  A + ++  E   +     + + +   
Sbjct: 540 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWESAGERV-NLQSPK 598

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+++  HS     A   +   L    +  LK
Sbjct: 599 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLK 658

Query: 292 --LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + TL +A +  DGR+  T +   A+ TGR S      QN+P +               
Sbjct: 659 QIVQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 702

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      A   +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G D
Sbjct: 703 ---------NAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRD 753

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+++++ +QR+  K M   L Y     G A+  K           Q+ 
Sbjct: 754 FHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQQLKISPKEAESLRNQYF 813

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     +   +S +  ++D     A+   + G+A
Sbjct: 814 ATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 873

Query: 503 CELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGGSISAR 541
            +++K A               + +LQ+  +L    A    E  +   R
Sbjct: 874 ADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVR 922


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 117/375 (31%), Gaps = 58/375 (15%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 8   HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 66

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + L    +       +   + +LA    +         I KL 
Sbjct: 67  NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 126

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + + +DG++         ++TGR S      QN+P +               
Sbjct: 127 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 170

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R     S     L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 171 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 221

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F       V+   R   K +   + Y     G +             +  +
Sbjct: 222 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 281

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +       +                      +     S +  ++      A+   + G+
Sbjct: 282 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 341

Query: 502 ACELVKKAWRAKHQG 516
           A +++K +     + 
Sbjct: 342 AADILKISMINLDKA 356


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L +  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 369 EAFKAWLANGEMRKHTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIIYAADYSQIELRVLAHIANDKG 684

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + D                       +  S +  ++      
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804

Query: 493 AVKDKLIGT 501
           A+   + G+
Sbjct: 805 AMNTPIQGS 813


>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 865

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 127/382 (33%), Gaps = 72/382 (18%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G   D  ++ K+ +    +   L   I ++      +      L 
Sbjct: 472 IEMPLTRVLYAMEKEGVYCDKAVLQKIADETEAKINALSLQIYEIAGMEF-NINSPKQLA 530

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297
             L+   G+      +   K   +   + +L     +  L        K+ +     L++
Sbjct: 531 SVLYDELGL------KAGKKRSTAADVLEKLVHVHPIIPLLLEHRKYQKIYSTYAIGLAK 584

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            + +DG++         ++TGR S      QN+                           
Sbjct: 585 HILADGKIHTLFNQI-QTQTGRLSSSEPNLQNIS------------------------VR 619

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +AS G  L+ AD + IE R+LA +A E+  I AF +  DI+  T  + F
Sbjct: 620 NEEGKGIRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIF 679

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +   D+V    R   K +   + Y     G ++            ++++  +     TF 
Sbjct: 680 DVAHDEVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHTFIEKYFASYPKIKTFM 739

Query: 474 DWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
           D   A                        +  M++     A+   + G+A +L+K A   
Sbjct: 740 DATIAYCEEHGYVKTLYNRRRYIKEIADKNYMMREFGKRAAMNAPIQGSAADLIKMAMIH 799

Query: 511 --------RAKHQGVLQLWKDL 524
                   + K + +LQ+  +L
Sbjct: 800 IYQKMQEEKVKSRMILQIHDEL 821


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 138/371 (37%), Gaps = 59/371 (15%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 507 DLYKVLM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEAGEE 563

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 564 F-NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 622

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  +    G + TGR S      QN+P +              
Sbjct: 623 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 670

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   IA  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 671 -------------GIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 717

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 718 LHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 777

Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     +TFE                          +S +  ++ Q    AV   + GT
Sbjct: 778 FEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 837

Query: 502 ACELVKKAWRA 512
           A E++KK    
Sbjct: 838 AAEVLKKVMVK 848



 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 806 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 865

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E   +       +   +M
Sbjct: 866 HDELIFEVEKSSVEKYSEILADIM 889


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L +  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 369 EAFKAWLANGEMRKHTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 684

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + D                       +  S +  ++      
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804

Query: 493 AVKDKLIGT 501
           A+   + G+
Sbjct: 805 AMNTPIQGS 813


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L +  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 369 EAFKAWLANGEMRKHTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 684

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + D                       +  S +  ++      
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804

Query: 493 AVKDKLIGT 501
           A+   + G+
Sbjct: 805 AMNTPIQGS 813


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/559 (16%), Positives = 182/559 (32%), Gaps = 85/559 (15%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           A+A  D      D T         L   L D  +  + H+     +              
Sbjct: 364 AFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLK---VPLHAVRARGWTFGG 420

Query: 93  WICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               + LA     P      L +  L     E  ++  +G   ++    G  D       
Sbjct: 421 LNMDTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLD-GGADELEQKEI 479

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            A  V+A  +F       + A  E       L++ E  L  +   +   G  +D D + +
Sbjct: 480 SAELVKARAIFELAGA--LAAELEELGGAKLLAELELPLLEVITELEAAGIAVDTDQLTE 537

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------ 262
           L+        +  E   ++    I +      L++ LF   G+     ++          
Sbjct: 538 LEAHYLSRVTQAAESAYEVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAL 596

Query: 263 ----SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
                   H  +  L +     RL ++      +  L ++V+ DGR+  TLQ   A+ TG
Sbjct: 597 QSLFEKTEHPFLQHLLEHRDATRLRTT------VEGLIKSVADDGRIHTTLQQTIAA-TG 649

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLV 377
           R S      QN+P +                              +R   +  +G  +L+
Sbjct: 650 RLSSIEPNLQNIPVRT------------------------EEGRRIRDAFVVGDGYAELM 685

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R++A ++ ++  I+AF +GED++    ++AF+ P  +++ EQR   K M  
Sbjct: 686 TADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSY 745

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
            L Y     G ++  K         ++ +         +                     
Sbjct: 746 GLAYGLSAYGLSQQLKISTEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGRR 805

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ------GVLQLWKDLTE 526
                  S +   ++     A+   + G+A +++K A    H+         ++   + +
Sbjct: 806 RYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALAEAGARSRVLLQVHD 865

Query: 527 GFACVVQEGGSISARRVAN 545
                + +G      ++  
Sbjct: 866 ELVLEIADGERSDVEKLVR 884


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/514 (14%), Positives = 160/514 (31%), Gaps = 70/514 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90
           +  +AW     +++  T+ S + +DL + + ++ +        F+R  +    LGI++ +
Sbjct: 338 IIGFAWGHGE-QIYASTDLSLLSTDLFKKVFEKPIATY----DFKRSKVLLSHLGIELVA 392

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +   + LA                     ++   +       + KG   + P      
Sbjct: 393 PSY--DARLANYLLSNVEDNELTTIARLFTDISLEADDSI----YGKGVKRAVPEKEVLL 446

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H+          +  +        ++    + E  L  +   +   G +++   +  + 
Sbjct: 447 GHLARKVKVLLDSRAPMVEKLADHDQIDLYHEIELPLANVLAKMEIEGIKVNRATLQDMA 506

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           E      + L ++I  +      +      L   LF    + L    +       +   +
Sbjct: 507 EQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVL 565

Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +LA    +         I KL +     L + + +DG++         ++TGR S    
Sbjct: 566 ERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDP 624

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384
             QN+P +                              +R     S     L+ +D + I
Sbjct: 625 NLQNIPIR------------------------LEQGRLIRKAFTPSHEDAVLLSSDYSQI 660

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ- 442
           E RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   + Y  
Sbjct: 661 ELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGI 720

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478
              G +             +  + +       +                      +    
Sbjct: 721 SDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDI 780

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
            S +  ++      A+   + G+A +++K A   
Sbjct: 781 NSRNFNVRSFAERTAINSPIQGSAADILKIAMIN 814


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 134/395 (33%), Gaps = 60/395 (15%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           ER L  +   +   G +ID +L+ +L +  +     L+E+I  L       +     L  
Sbjct: 455 ERPLVPVIYELEKTGIKIDTELLKQLSDEFSLSISNLEEEIFGLAGCKFNIASS-QQLGK 513

Query: 244 YLFLITGIDLVDMSEG----TLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEA 298
            LF    I            T   +L+   +  +   D IL     +       + L   
Sbjct: 514 VLFEHMRIGGAKKMPSGSYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQ 573

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           V +  GR+        A+ TGR S      QN+P + +                      
Sbjct: 574 VDANTGRVHTKYSM-TATATGRLSSSNPNLQNIPIRSKD--------------------- 611

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
               + +RS  IA  G KL+ AD + +E ++LA IA      +AFA G DI+V T  + F
Sbjct: 612 ---GEKIRSAFIAEKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIF 668

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                ++  E R   K +   + Y  G    A+            ++Q+ Q       + 
Sbjct: 669 G-EYYEIDYELRRRAKSINFGIIYGMGSYGLARNIGISRREASEYVEQYFQYYPEIKRYM 727

Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +  +A +                         +       A+   + GTA ++VKKA   
Sbjct: 728 ETTKAYAKKHGYTITAFGRKCFIEGINSPKRALSSVAERAAINAPIQGTAADIVKKAMVR 787

Query: 513 KHQGVLQ--LWKDLTEGFACVVQEGGSISARRVAN 545
               + Q  +   + +     V E   +S  R+  
Sbjct: 788 LQDRLTQGTMLLQVHDELLVEVPEEHVLSVARLMK 822


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/526 (17%), Positives = 166/526 (31%), Gaps = 89/526 (16%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D   +  D T         L   L D       H +    +      G           +
Sbjct: 368 DGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAK---LAMHDLQGRGWTLAGVTSDT 424

Query: 98  VLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            LA     P   S     L+L +          K  +             D + A   QA
Sbjct: 425 ALAAYLVRPGQRSFALDDLSLRYL---------KRELRADNPEQQQLSLLDDSDAVDDQA 475

Query: 156 WQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Q         V+    L + L        L   E  +  +   +   G  +DL ++ +L
Sbjct: 476 VQTLLLRAGAVVDLADALDEELARIDSSALLGSMELPVQRVLAQLETVGIAVDLAMLSEL 535

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262
           Q   A + +   E    +    I +      L++ LF    +     ++           
Sbjct: 536 QSEFAGQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQ 594

Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
                  H  +  L       RL  +      ++ L  +V++DGR+  T     A+ TGR
Sbjct: 595 SLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAADGRIHTTFNQTIAA-TGR 647

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P +                          A   +R   +   G   L+ 
Sbjct: 648 LSSTEPNLQNIPIRT------------------------EAGRRIRDGFVVGEGYADLMT 683

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ +   I+AF  GED++    ++AF+ P+D+V+ E R   K M   
Sbjct: 684 ADYSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYG 743

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474
           L Y     G ++  K         ++Q+         +                      
Sbjct: 744 LAYGLSAYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRR 803

Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              + +S +  +++     A+   + G+A +++K A     Q + +
Sbjct: 804 YLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKE 849


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 184/529 (34%), Gaps = 78/529 (14%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68
                 +   G+  + E+  I L   + ++ PV ++D      + +   L + L DE ++ 
Sbjct: 1258 YCGLDMETTGLEVFGEK--IRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1315

Query: 69   VAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            +  N  F+ + L      I      +I + +L +   +     N  +    S +L K ++
Sbjct: 1316 IIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQ 1375

Query: 128  GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGERD 186
                       +        +        +L  +    +++   ++  + ++P+ D E +
Sbjct: 1376 NSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQIVNDIENKCILPICDMELN 1435

Query: 187  LWLLDQTINDRGYRIDLD-LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
                       G ++DL+ L     +++ +   + D+   +L +  I +      +   L
Sbjct: 1436 -----------GIKVDLENLNKSTDQILNELNVERDKLKKELKNEDI-NVNSQQQILKAL 1483

Query: 246  FLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
                  DL      + S+  LK+ ++H+ +  L     L +L S+         L   ++
Sbjct: 1484 QDNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAF-----YLKLPLHIN 1538

Query: 301  S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                ++  T      + +GR+S      Q +PRQ                          
Sbjct: 1539 KKTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ-------------------------- 1571

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   I +     ++AD   IE ++ A I  ++  +KA+ N  D++  T +     
Sbjct: 1572 --KNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKK 1629

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQA 478
             I++++KE R + K +   L Y       +T A+          Q      S FE ++  
Sbjct: 1630 GINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGL 1689

Query: 479  ESHHLWMQDQYP------------------EFAVKDKLIGTACELVKKA 509
               H  ++                        A+   + GT  +++K A
Sbjct: 1690 SRWHNIVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADILKLA 1738



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 550  VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
             +  +          SR            Y   +  +++       K     VQ    DI
Sbjct: 1675 CLYFYNSFFEHYKGLSRWHNIVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADI 1734

Query: 610  LCEGM----KNATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
            L   +    KN       I+L VHDEI+ E        ++  L   M
Sbjct: 1735 LKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALRILVESM 1781


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 136/400 (34%), Gaps = 56/400 (14%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +  RG   D + +    + + ++ K++++ I ++      +      L 
Sbjct: 445 IEHPLTFVLYKMEKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAGEKF-NLNSPKQLS 503

Query: 243 MYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
             LF    +  +  ++      ++++ + +       +L+L     +      +  + + 
Sbjct: 504 KILFEKLKLKPLKKTKSGYSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKH 563

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DGR+R T    G + TGR S      QNLP                           
Sbjct: 564 MDEDGRVRTTFIQTG-TATGRLSSAEPNLQNLP------------------------VSD 598

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
             S  +R  + A  G  LV AD + IE R+LA ++ ++  ++A+  G DI+  T +  F 
Sbjct: 599 EISKKIRYAVTAPAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFG 658

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED 474
              ++V +  R I K +   + Y                     + ++ +       + +
Sbjct: 659 ISAEEVDERLRRIAKTVNFGIIYGMSPHGLSERLGISVEEAEKYIDRYFEKFPKVKEYIE 718

Query: 475 WEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAK 513
               E++                                AV   + GTA +++K A    
Sbjct: 719 NTLREAYEKGYVKTIFGRKRPLPELKSSNKNIRSFGERAAVNATIQGTAADIMKLAMVKL 778

Query: 514 HQGVLQLW-KDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           ++ + +L    + +    +V E        +  + +  M 
Sbjct: 779 YKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVKETME 818



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            A +  +       + K  +   L  +    Y   + G    L    S     R++G + 
Sbjct: 698 EAEKYIDRYFEKFPKVKEYIENTLREAYEKGYVKTIFGRKRPLPELKSSNKNIRSFGERA 757

Query: 598 TENIV-QAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             N   Q  + DI+   M    K   K G  +VL VHDEIV E  +     +  +  
Sbjct: 758 AVNATIQGTAADIMKLAMVKLYKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVK 814


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/545 (16%), Positives = 169/545 (31%), Gaps = 75/545 (13%)

Query: 45  WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            D           LQ  L D+ V    H++          +G D+          LA   
Sbjct: 356 VDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHAL---MGRDLRLGGVTMDVALAAYL 412

Query: 104 GLPSSLKNACLAL---NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
             P         L   +    L + E  +  ++   +            A   +A  +  
Sbjct: 413 VRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEVDDAEAAQRAADAAATRARAVVD 472

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              + DVE   ++    + +++ E  L  +   +   G  +D   +  L++  A   ++ 
Sbjct: 473 LAERLDVELE-QVHGATL-MAEMELPLVPVLARMESIGIAVDASALNGLRDDFADRGRQA 530

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQL 273
            E       G   +      L++ LF   G+                L+ +L+       
Sbjct: 531 AEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDAKALEELLAKETGDTP 590

Query: 274 AKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +  +   L    +  ++  +  L + +  D R+  T     A+ TGR S      QN+P
Sbjct: 591 GRAFLEALLLHRETTKMRTTVEGLIKTIGDDRRIHTTFNQTVAA-TGRLSSTDPNLQNIP 649

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
            +                              +R   +   G   L+ AD + IE RV+A
Sbjct: 650 VRTED------------------------GRRIRGSFVVGEGYDCLLTADYSQIEMRVMA 685

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            ++G+   I+AF  GED++    ++AF  PID+V+ E R   K M   L Y     G A 
Sbjct: 686 HLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAYGLSAFGLAA 745

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485
                       ++ +         +      ++                      +   
Sbjct: 746 QLGISQGEAREQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRYLPELNSDNRLK 805

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSIS 539
           ++     A+   + GTA +++K A       +       +L   + +     V  G    
Sbjct: 806 RENAERAALNAPIQGTAADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDE 865

Query: 540 ARRVA 544
            R + 
Sbjct: 866 VRGLV 870



 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 8/118 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKL 597
            AR             +  +  V+  +R+  Y++   G   YL    S    +R    + 
Sbjct: 753 EAREQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRYLPELNSDNRLKRENAERA 812

Query: 598 TENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
             N  +Q  + DI+   M          G    ++L VHDE+V E        V  L 
Sbjct: 813 ALNAPIQGTAADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDEVRGLV 870


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/496 (16%), Positives = 150/496 (30%), Gaps = 75/496 (15%)

Query: 54  PSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           P D+      L D  V    H + +     +   G           + LA     P    
Sbjct: 376 PEDVRALDGWLADPAVPKAFHEAKWATHALR--GGGFAEIAGVTTDTGLAAYIARPGQRS 433

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       ++        +       +        +  +A  +       D    
Sbjct: 434 FNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGEDKEADDSITEAAAIRELGGALDDVLD 493

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +     L  L   E  L  +   + + G  +D D +  L    A   K+  E    +   
Sbjct: 494 KAGSADL--LRTMELPLTFVLARMEEAGIAVDQDGLAGLHADFAARVKQAAESAYSVIGK 551

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILN 280
            I +      L++ LF   G+                L+ +     H  +  L +     
Sbjct: 552 EI-NLGSPKQLQVVLFDELGMPKTKKTKTGHTTDADALQWLFEKTEHPFLLYLLEHRDAT 610

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           RL ++         L +A+  DGR+  T +    + TGR S      QN+P +       
Sbjct: 611 RLMTT------AQGLIKAIGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIPVRT------ 657

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399
                               +  +R   +   G + L+ AD + IE R++A ++G+D  I
Sbjct: 658 ------------------DEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDDGLI 699

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +AF  GED++    ++AF  PID+V  E R   K M   L Y     G A          
Sbjct: 700 EAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMSYGLAYGLSAFGLASQLGVSGEEA 759

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              +  +         +      E+                      +   +      A+
Sbjct: 760 KAQMDAYFARFGGVRDYLHAVVEEARRKGYTETLFGRRRYLPDLTSDNQQQRAVAERAAL 819

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +++K A 
Sbjct: 820 NAPIQGSAADIIKVAM 835


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 161/490 (32%), Gaps = 67/490 (13%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   + +  ++    N   + IL K+ LGI +   ++    V    +   +  + A LA
Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTKFDFLLVSYLLDTTDNDNELATLA 430

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDS--PPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             F  ++T  E+     A+F     D+    +   +A+ +    +  E    D       
Sbjct: 431 QRFDLYMTSDEDIYGKGAKFAIPEDDARVLAHLANKADIL----MQVEQSAFDALQE--- 483

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++    ++ E  L  +   +  +G +ID   + +      + R    ED + +  G   
Sbjct: 484 HEQTHLYTEIELPLAQVLADMEYQGIKIDQKRL-RDIGSDLEGRIHAIEDAIYIEAGEKF 542

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF   G+ +V  ++    T   +L          D IL     +     
Sbjct: 543 NINSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVDHILQYRQLAKLKST 602

Query: 291 KLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L   V   D ++         ++TGR S      QN+P +                
Sbjct: 603 YVEGLLTVVHDQDSKIHTRF-LQTLTQTGRLSSVDPNLQNIPMRT--------------- 646

Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R+  + S    ++V AD + IE RVLA + G+    +AF NGEDI
Sbjct: 647 ---------EEGRQIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDI 697

Query: 409 YVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T    F    D  V    R   K +   + Y     G A             +  + 
Sbjct: 698 HAETARAVFGLKDDAPVDALMRRTAKAVNFGIVYGISDFGLANNLGISRGEAKSFIDTYF 757

Query: 464 QNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTA 502
           +       +    +  +H                        ++      A+   + G+A
Sbjct: 758 KEFPQIHAWMAKIKEIAHEQGFVETIAKRRRYLPEIGSKNFNLRSFAERTAMNSPIQGSA 817

Query: 503 CELVKKAWRA 512
            +++K A   
Sbjct: 818 ADIIKIAMIK 827



 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M               ++L VHDE++ E P      +  L 
Sbjct: 813 IQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDEIQELTELV 865


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/529 (15%), Positives = 165/529 (31%), Gaps = 81/529 (15%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
              + + A +   +   + D  E   A  S L   LR +T++  +      +   K    
Sbjct: 341 HGDVRILAVSGAPDEAWVVDLAEAGEADVSKLSSALRSKTLILHS-----SKTQIKAWRS 395

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           + +        + LA    +P         +       ++ + ++   +           
Sbjct: 396 LGLDVDDVAGDTALAAYLLVPDQRSYELQQIALERAGIELSDAESDSGQL---------- 445

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGY 199
                   Q  Q  G      +E    L  ++   +      D E  L  +   +   G 
Sbjct: 446 -ALDLESDQTAQTHGHRAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAGI 504

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
            +D   +  L +   ++     E   +     + +      L+  LF    +     ++ 
Sbjct: 505 AVDEAGLSGLIDEFTKQANASAELAYEAIGHEV-NLGSPKQLQTVLFDELDMPKTKRTKT 563

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLN----TLSEAVSSDGRLRGTLQFYGAS 315
              +         +  +    +   +     KL      L + V+ DGR+  T Q   A+
Sbjct: 564 GYTTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTTYQQTVAA 623

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN--- 372
            TGR S      QN+P +  S                           +R   IA     
Sbjct: 624 -TGRLSSLDPNLQNIPVRTES------------------------GRRIREIFIADPHVD 658

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
             +L+ AD + IE R++A ++G+   I+AF +GED++    +K F   ID+V    R+  
Sbjct: 659 DARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKV 718

Query: 433 KVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAESH------- 481
           K M   L Y   A       +         ++Q+ +   +   + D    ++        
Sbjct: 719 KAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTET 778

Query: 482 --------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                            ++D     A+   + G+A +++K A       
Sbjct: 779 IMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDR 827



 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 8/164 (4%)

Query: 497 KLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           K+ G   + V  A R+K + +   L   L+          G   A+ +           K
Sbjct: 701 KVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVK 760

Query: 556 RDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +  ++  +R   Y++ + G   YL    S   + R    +   N  +Q  + DI+   
Sbjct: 761 DYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIA 820

Query: 614 MKNATKNGYD----IVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
           M   +    D    ++L VHDEI+ +       SV  +    M 
Sbjct: 821 MLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMG 864


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 123/708 (17%), Positives = 237/708 (33%), Gaps = 155/708 (21%)

Query: 7   DIETRSPQPLPKV--GVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAMPSD 56
           D ET SP+   +        A +A IT  +++  +                  Q+A+   
Sbjct: 25  DFET-SPRDKWRNDKSAALDAHKADITGISFSVSEGTAIYVPLKHRSGRNAENQAAIWDY 83

Query: 57  LLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNG------LPSSL 109
           L      + V+ VAHN  FE +    + + +  P    I  S L   +         S L
Sbjct: 84  LKLLFESKDVIKVAHNLAFESMFLYARGIVLQKPCYDTIAASQLTLKSKWEFRSLADSGL 143

Query: 110 KNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRD 166
           K    AL  +E    + + EG+            +  Y C  +++  + + +F ++  R 
Sbjct: 144 KTLAPALCKAEMTEFSTVTEGR-FFDELNPQDEKTVRYACADSDYTLRLYHVFNQWFDRF 202

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +   R +      + + E    +    +   G  +D   +LK Q   A++   + ++I  
Sbjct: 203 LPKHRTI------VEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVSIRKEIAG 256

Query: 227 LTDG-IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI----------TQLAK 275
           +     I ++  T A + YLF+  G+ ++  +    ++    + I           +L +
Sbjct: 257 IIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEWCATNRPELVR 316

Query: 276 --DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             +L+             ++     +  D GR+   L   G + TGR++      QN P+
Sbjct: 317 LFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLG-TETGRFASRNPNMQNCPQ 375

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           ++                    DP+G     VR  IIA  GK L+  D + IE RV A+ 
Sbjct: 376 KD-------------------NDPIG-----VRKFIIAPAGKVLLSLDFSQIELRVGAFY 411

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------VSKEQRAIGKVMELALGYQGGA 445
             +   ++ +  G DI+  T +  +  P ++         KE+R I K     + Y    
Sbjct: 412 CRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFYGLFP 471

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
              +                                  +     P  A         CE 
Sbjct: 472 TGLQRTLK------------------------------FKAGINPTLA--------ECET 493

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
           + +  ++ + G+ + W+D              +  R   +         +R +       
Sbjct: 494 IIQNLKSGYPGLAK-WQD-------------EVKKRAAVSCYSETWLGRRRYL------- 532

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA-----TK 619
                         L   +S   + +++  +   N  +Q  + DIL             +
Sbjct: 533 --------------LGIRSSDWGK-KSFAERCALNTPIQGTAADILKLACGRIISGLPER 577

Query: 620 NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLKAE 666
                +L +HDE+V E P+     +V  +   M   P  A  +P+ AE
Sbjct: 578 LWLKPMLQIHDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAE 625


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 138/409 (33%), Gaps = 68/409 (16%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D E +R+  +    ++  E  L  +  T+   G   D D + +L+   A E K   +   
Sbjct: 492 DAELSRDGEQSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAY 551

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLI 278
           ++      +      L+  LF   G+      +         L+ + + +    L   L 
Sbjct: 552 EVVGREF-NLGSPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLR 610

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              +A   S +   + L ++VS DGR+  T     A+ TGR S      QN+P +     
Sbjct: 611 HRDVAKLKSTV---DGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT---- 662

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDW 397
                                    +R   +   G + L+ AD + IE R++A ++ +D 
Sbjct: 663 --------------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDA 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I+AF +G D +  T +  F   +  V+ +QR   K M   L Y     G ++     A 
Sbjct: 703 LIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAE 762

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492
                ++ +         +     A +                      +   ++     
Sbjct: 763 EARGLMENYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERM 822

Query: 493 AVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535
           A+   + G+A +++K A               ++   + +     V  G
Sbjct: 823 ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPG 871


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 151/409 (36%), Gaps = 73/409 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G ++D+  + ++++  A + ++  E   +     + + +   
Sbjct: 539 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWESAGERV-NLQSPK 597

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+++  HS     A   +   L    +  LK
Sbjct: 598 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLK 657

Query: 292 --LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + TL +A +  DGR+  T +   A+ TGR S      QN+P +               
Sbjct: 658 QIVQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 701

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      A   +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G D
Sbjct: 702 ---------NAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRD 752

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+++++ +QR+  K M   L Y     G A+  K           Q+ 
Sbjct: 753 FHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQQLKISPKEAESLRNQYF 812

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     +   +S +  ++D     A+   + G+A
Sbjct: 813 ATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 872

Query: 503 CELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGGSISAR 541
            +++K A               + +LQ+  +L    A    E  +   R
Sbjct: 873 ADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVR 921



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654
           +Q  + DI+   M               I+L +HDE+V E  P     +   + + M   
Sbjct: 868 IQGSAADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHA 927

Query: 655 PSWAKGLPLKA 665
            + A  +PL A
Sbjct: 928 VTMA--VPLDA 936


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 165/524 (31%), Gaps = 79/524 (15%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L       + HN+     + +         +     + LA     P     A  AL+   
Sbjct: 395 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 451

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
              ++    A          ++  +         +     FGE  ++ V AT        
Sbjct: 452 LGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ-VGAT-------G 503

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            L+D E    +L  ++   G   D D +  ++   A   ++  ++          +    
Sbjct: 504 LLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREF-NLGSP 562

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NT 294
             L+  LF    +     ++    +            D  L  +        KL      
Sbjct: 563 KQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTVEG 622

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +++++DGR+  T     A+ TGR S      QN+P +                     
Sbjct: 623 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-------------------- 661

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  
Sbjct: 662 ----DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVA 717

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           ++ F    D V  E R   K M   L Y     G ++     A      +  + +     
Sbjct: 718 SQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGV 777

Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508
             +      E+                      +   ++     A+   + GTA ++VK 
Sbjct: 778 RDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRRETAERMALNAPIQGTAADIVKI 837

Query: 509 AW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           A           R   + +LQ+  ++    A   +E      RR
Sbjct: 838 AMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERVEEIVRR 881



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 85/279 (30%), Gaps = 33/279 (11%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK+ A    I+         T   +   P  +    +   G+ +        G +  
Sbjct: 621 EGLIKSIATDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESL 680

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G   + V  
Sbjct: 681 MT-ADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVASQ---------VFGVERDAVDA 730

Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +   L   L+           +  AR + +         +  +   +  +R 
Sbjct: 731 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARA 790

Query: 568 LVYSDVKGDCSYL----NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN-- 620
             Y++            N+   Q  R  T   ++  N  +Q  + DI+   M    +   
Sbjct: 791 TGYTETMLGRRRYLPDLNSDNRQ--RRET-AERMALNAPIQGTAADIVKIAMLRVHRALT 847

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
                  ++L VHDEIV E        V  +    M   
Sbjct: 848 EARLSSRMLLQVHDEIVLEIAPGERERVEEIVRREMADA 886


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 138/397 (34%), Gaps = 72/397 (18%)

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G  +D D +  L    A   K+  +D   +    I +      L++ LF  
Sbjct: 502 QVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDE 560

Query: 249 TGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            G+     ++           +L     H  +  + +     RL ++      ++ L ++
Sbjct: 561 LGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT------VDGLVKS 614

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DGR+  TL    A+ TGR S      QN+P +                         
Sbjct: 615 IADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPIRT------------------------ 649

Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +   G  +L+ AD + IE R++A ++G++  I+AF  GED++    ++AF
Sbjct: 650 EEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAF 709

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             PID+V  E R   K M   L Y     G A+  +         ++ +     S   + 
Sbjct: 710 GVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYL 769

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                      S +   +D     A+   + G+A +++K A   
Sbjct: 770 RDVVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLD 829

Query: 513 KH----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
            H        ++   + +     V +G      R+  
Sbjct: 830 VHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVR 866


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 165/524 (31%), Gaps = 79/524 (15%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L       + HN+     + +         +     + LA     P     A  AL+   
Sbjct: 384 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 440

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
              ++    A          ++  +         +     FGE  ++ V AT        
Sbjct: 441 LGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ-VGAT-------G 492

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            L+D E    +L  ++   G   D D +  ++   A   ++  ++          +    
Sbjct: 493 LLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREF-NLGSP 551

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NT 294
             L+  LF    +     ++    +            D  L  +        KL      
Sbjct: 552 KQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTVEG 611

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +++++DGR+  T     A+ TGR S      QN+P +                     
Sbjct: 612 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-------------------- 650

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  
Sbjct: 651 ----DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVA 706

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           ++ F    D V  E R   K M   L Y     G ++     A      +  + +     
Sbjct: 707 SQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGV 766

Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508
             +      E+                      +   ++     A+   + GTA ++VK 
Sbjct: 767 RDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRRETAERMALNAPIQGTAADIVKI 826

Query: 509 AW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           A           R   + +LQ+  ++    A   +E      RR
Sbjct: 827 AMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERVEEIVRR 870



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 85/279 (30%), Gaps = 33/279 (11%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK+ A    I+         T   +   P  +    +   G+ +        G +  
Sbjct: 610 EGLIKSIATDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESL 669

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G   + V  
Sbjct: 670 MT-ADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVASQ---------VFGVERDAVDA 719

Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +   L   L+           +  AR + +         +  +   +  +R 
Sbjct: 720 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARA 779

Query: 568 LVYSDVKGDCSYL----NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN-- 620
             Y++            N+   Q  R  T   ++  N  +Q  + DI+   M    +   
Sbjct: 780 TGYTETMLGRRRYLPDLNSDNRQ--RRET-AERMALNAPIQGTAADIVKIAMLRVHRALT 836

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
                  ++L VHDEIV E        V  +    M   
Sbjct: 837 EARLSSRMLLQVHDEIVLEIAPGERERVEEIVRREMADA 875


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 128/414 (30%), Gaps = 68/414 (16%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             +L    D E  L  +   +   G +++ + ++++ E       +L ++I  L      
Sbjct: 471 HDQLALFEDIEMPLANVLAKMEITGIKVNKETLVEMAEQNKVIIDRLTQEIYDLAGEEF- 529

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L   LF    + +    +       +   + +LA    +         I KL 
Sbjct: 530 NINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVDVLERLAPIAPVVAKILDYRQITKLQ 589

Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           +     L + +  DG++         ++TGR S      QN+P +               
Sbjct: 590 STYLIGLQDYIMEDGKIHTRYV-QDLTQTGRLSSIDPNLQNIPIR--------------- 633

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R    AS     L+ +D + IE RVLA I+G+   I AF    D
Sbjct: 634 ---------MEQGRLIRKAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDAD 684

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           I+ +T  + F    ++ V+   R   K +   + Y     G +             +  +
Sbjct: 685 IHTSTAMRVFAIDKEEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGISRQKAKEYINTY 744

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
                    + D                          S +  ++      A+   + G+
Sbjct: 745 FDRYPGIKDYMDSIVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 804

Query: 502 ACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A           R K + +LQ+  ++         E      +    
Sbjct: 805 AADILKIAMINLDKALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETME 858


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 138/397 (34%), Gaps = 72/397 (18%)

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G  +D D +  L    A   K+  +D   +    I +      L++ LF  
Sbjct: 503 QVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDE 561

Query: 249 TGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            G+     ++           +L     H  +  + +     RL ++      ++ L ++
Sbjct: 562 LGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT------VDGLVKS 615

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           ++ DGR+  TL    A+ TGR S      QN+P +                         
Sbjct: 616 IADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPIRT------------------------ 650

Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +   G  +L+ AD + IE R++A ++G++  I+AF  GED++    ++AF
Sbjct: 651 EEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAF 710

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             PID+V  E R   K M   L Y     G A+  +         ++ +     S   + 
Sbjct: 711 GVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYL 770

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                      S +   +D     A+   + G+A +++K A   
Sbjct: 771 RDVVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLD 830

Query: 513 KH----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
            H        ++   + +     V +G      R+  
Sbjct: 831 VHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVR 867


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 130/385 (33%), Gaps = 66/385 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  L  +   +   G  ID   + +L++ +  +   L           I +     
Sbjct: 492 LDEIELPLVAVLAEMELNGVAIDAVALTRLRDRLTGKASDLAARAYAEIGHEI-NLGSPK 550

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+  LF   G+     ++    +  +     Q         L        KL     TL
Sbjct: 551 QLQQVLFEELGMPKTRSTKTGYSTDAASLADLQEKSPHPFLGLLLQHRDATKLKQIVETL 610

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             +V+ DGR+  T    G + TGR S      QN+P +                      
Sbjct: 611 ERSVTGDGRIHTTYDQTG-TSTGRISSNDPNLQNIPIRT--------------------- 648

Query: 356 PLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +RS  +     + L+ AD + IE R++A ++ +   I+AF  GED++    +
Sbjct: 649 ---EEGREIRSSFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGS 705

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F  P ++V+   R   K M   L Y     G +K  +   S     +  + +   +  
Sbjct: 706 RVFGVPPEEVTPLMRTKVKAMSYGLAYGLSAFGLSKQLRIETSEARELMNGYFERFGAVR 765

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +      ++                      +  +++     A+   + G+A +++K A
Sbjct: 766 DYLRNVVEQARLDGFTETIFGRRRPFADLTSTNRVLRENAERQALNAPIQGSAADIMKIA 825

Query: 510 W----------RAKHQGVLQLWKDL 524
                      R   + +LQ+  +L
Sbjct: 826 MLGIAGDMSDQRLGSRMLLQVHDEL 850



 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          + G  ++L VHDE++ E       ++ T+  
Sbjct: 814 IQGSAADIMKIAMLGIAGDMSDQRLGSRMLLQVHDELIFEVAPGEGDALETIVR 867


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 138/409 (33%), Gaps = 68/409 (16%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D E +R+  +    ++  E  L  +  T+   G   D D + +L+   A E K   +   
Sbjct: 482 DAELSRDGEQSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAY 541

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLI 278
           ++      +      L+  LF   G+      +         L+ + + +    L   L 
Sbjct: 542 EVVGREF-NLGSPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLR 600

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              +A   S +   + L ++VS DGR+  T     A+ TGR S      QN+P +     
Sbjct: 601 HRDVAKLKSTV---DGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT---- 652

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDW 397
                                    +R   +   G + L+ AD + IE R++A ++ +D 
Sbjct: 653 --------------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDA 692

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I+AF +G D +  T +  F   +  V+ +QR   K M   L Y     G ++     A 
Sbjct: 693 LIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAE 752

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492
                ++ +         +     A +                      +   ++     
Sbjct: 753 EARGLMENYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERM 812

Query: 493 AVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535
           A+   + G+A +++K A               ++   + +     V  G
Sbjct: 813 ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPG 861


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 90/541 (16%), Positives = 163/541 (30%), Gaps = 81/541 (14%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D  E +      L   L D     V HN+     +  +        +     + LA    
Sbjct: 373 DPAELAEADEQALAAWLADPGQPKVLHNAKNALRVLPEQGW---RLEGISMDTALAAYLV 429

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH---VQAWQLFGE 161
            P     A  AL       ++    A   +   G+ D    D   A     +     F  
Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAPASDGQLAFGADDRAEADALMAQARAVLDLGDAFTT 489

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             K  V AT  L+       D E    ++   +   G   D   +  +++  A   ++  
Sbjct: 490 RLKE-VGATELLY-------DMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAV 541

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++          +      L+  LF    +     ++    +            +  L  
Sbjct: 542 KEAHAAVGREF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPV 600

Query: 282 LASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +        KL      L + +++DGR+  T     A+ TGR S      QN+P +    
Sbjct: 601 IMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--- 656

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396
                                     +R   +   G + L+ AD + IE RV+A ++ + 
Sbjct: 657 ---------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDA 695

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
             I+AF +GED++ T  ++ F      V  E R   K M   L Y     G ++     A
Sbjct: 696 GLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEA 755

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
                 +  +         +      E+                      +   ++    
Sbjct: 756 GEARGLMDTYFLRFGGVRDYLHRVVEEARSTGYTETILGRRRYLPDLNSDNRQRREAAER 815

Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            A+   + GTA ++VK A               + +LQ+  ++    A   +E      R
Sbjct: 816 MALNAPIQGTAADIVKVAMLKVDRALTEAELTSRMLLQVHDEIVLEIAKGEREQVEEILR 875

Query: 542 R 542
           R
Sbjct: 876 R 876



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 87/278 (31%), Gaps = 27/278 (9%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  A    I+         T   +   P  +    +   G+ +        G +  
Sbjct: 616 EGLIKTIAADGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G     V  
Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVEKSAVDA 725

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +          F    Q       AR + +   L     +  +H V+  +R 
Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARGLMDTYFLRFGGVRDYLHRVVEEARS 785

Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620
             Y++ + G   YL    S   + R    ++  N  +Q  + DI+   M    +      
Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLKVDRALTEAE 845

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656
               ++L VHDEIV E        V  +    M+    
Sbjct: 846 LTSRMLLQVHDEIVLEIAKGEREQVEEILRREMSTAVE 883


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/532 (15%), Positives = 170/532 (31%), Gaps = 90/532 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
            +++++DE                     +    ++ + +  V  V HN  F+     + 
Sbjct: 358 FSFSFNDEEAYYVPFGHFYLGVADQVSKDVAKQAMRRIFNSKV--VGHNIKFDLHFVTRF 415

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSI 140
           L        +  + +LA      S+L    L+     H     K    K     F    +
Sbjct: 416 LEEKDLPV-YCDSMILAWLINPESALSLDKLSDKLLGHEMVHFKDTVKKGEN--FSTVEL 472

Query: 141 DSP-PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
           D    Y    A   +             +AT  + +        E         + + G 
Sbjct: 473 DDACVYAAEDAFITRKLYKLFLKKLELQDATHLIEEA----KTVEIPFMHTLLKMEEEGI 528

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
            +D   + K    + +  + L + I +L      +   T  L   LF   G+ +   ++ 
Sbjct: 529 EVDTGFLEKFLVEVKETLEYLTKSIYELAGSEF-NINSTQQLGNILFEKLGLPVGKKTKT 587

Query: 259 --GTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTL 309
              T + +L      H  I +L +   +++L S+      ++ L +  + D   R+  + 
Sbjct: 588 GYSTNEKVLSSLKDKHPIIPKLLEYREVHKLYSTY-----IDPLLKLANEDEQHRIHTSF 642

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P +                              +R   +
Sbjct: 643 VQTG-TATGRLSSKNPNLQNIPTRT------------------------PLGAKIRRGFV 677

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  GKK +  D + +E R+LA  + +   + AF + +DI++ T    F    ++ +  +R
Sbjct: 678 AGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHDKDIHLQTAIVLFG---EEEAAHKR 734

Query: 430 AIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTF------------- 472
            I K +   L Y  G K                ++++ ++  +   +             
Sbjct: 735 NIAKTVNFGLLYGMGPKKLSDTLGITTKEAKEIIEKYFESFHTVKAYFRSIVESSKEKGY 794

Query: 473 -------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                    +   E+     +  Y   +V     G+  +++K +    H  +
Sbjct: 795 VETLLGRRRYFDYENATPMYRAAYERESVNSVFQGSVSDVIKLSMNKIHTII 846



 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 24/142 (16%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGKL 597
            A+ +           K     ++ SS+   Y +   G   Y +   +  M    Y  + 
Sbjct: 763 EAKEIIEKYFESFHTVKAYFRSIVESSKEKGYVETLLGRRRYFDYENATPMYRAAYERES 822

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV------- 644
             ++ Q    D++   M          K    ++L +HDE++ E  +     +       
Sbjct: 823 VNSVFQGSVSDVIKLSMNKIHTIINEEKLQAKMLLQIHDELIFEVDEKVADELGNRFRDI 882

Query: 645 -GTLCSLMTKNPSWAKGLPLKA 665
              +  L          +PLKA
Sbjct: 883 MDHIVEL---------NIPLKA 895


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 142/408 (34%), Gaps = 64/408 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + +     +   +   G ++D + + +L +    E  K++E+I  L+      + Q   L
Sbjct: 472 EIDLPTCFILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALSGTKFNIASQ-KQL 530

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295
              LF    +   +    T         + +L++D      L+L     +       ++L
Sbjct: 531 SEILFKKMQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKNTYTDSL 590

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + +++  +   T     ++ TGR S      QN+P +                      
Sbjct: 591 PKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSD------------------- 631

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                 + +R   IA +G KL+ AD + IE R+L+ IA  D   +AF N EDI+  T  +
Sbjct: 632 -----GNKIRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQ 686

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            FN    +++ E R   K +   + Y     G AK            ++Q+    K    
Sbjct: 687 IFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGTAAEYIKQYFAEYKGMQE 746

Query: 472 FEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +    +A +                   H   ++      A+   + GT+ +++K A   
Sbjct: 747 YMVQTKAYANRNGYVTNFFGRKCFIPLIHDKKLKQFAERAAINAPIQGTSADIIKIAMIK 806

Query: 513 KHQG----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             Q           +LQ+  +L      +  E      +++      +
Sbjct: 807 LAQEIEKRKLKTRLILQIHDELLFEVPEIELELVIPIIKKIMEYSTNI 854


>gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 169

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 20/176 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  Y+ D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCK 164
                K+  GK L+  FC       P   T+AN              WQ F +Y +
Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQ 168


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 85/547 (15%), Positives = 157/547 (28%), Gaps = 92/547 (16%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D T             + D     V HN+     +F +              + LA    
Sbjct: 384 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEHGW---RVDGITMDTALAAYLV 440

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P     A  AL+             L       + D      T  +      +      
Sbjct: 441 KPGRRSFALDALSVE----------YLHRELVPAAADGQLAFGTDEHAEADALMAQARAV 490

Query: 165 RDV----EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            D+     A  E       L D E     L   +   G   D   +  ++ L A   ++ 
Sbjct: 491 LDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQA 550

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270
            ++          +      L+   F    +     ++            L     H   
Sbjct: 551 VKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELP 609

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +     RL S+      +  L + V++DGR+  T     A+ TGR S      QN+
Sbjct: 610 VIMLRHREQARLRST------VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNV 662

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389
           P +                              +R   +   G + L+ AD + IE RV+
Sbjct: 663 PVRT------------------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVM 698

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++ ++  I+AF +GED++ T  ++ F     +V  E R   K M   L Y     G +
Sbjct: 699 AHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLS 758

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484
           +     A      +  + +       +      E+                      +  
Sbjct: 759 QQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQ 818

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSI 538
            ++     A+   + GTA ++VK A     + +       +L   + +     +  G   
Sbjct: 819 RREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERD 878

Query: 539 SARRVAN 545
               +  
Sbjct: 879 EVETIVR 885


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 110/633 (17%), Positives = 195/633 (30%), Gaps = 129/633 (20%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           ++   L D     + P  + +       +  A ++L          G           + 
Sbjct: 359 EDDAALADWLADESRPKAVHE-------VKWALHAL---------RGRGWTLTGVTSDTA 402

Query: 99  LARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           LA     P   +     LAL +     K E+G     +      D+          + A 
Sbjct: 403 LAAYLVRPGQRTFNLDDLALRYLRRELKAEDGAGDDGQLSLLDDDADAQRAADQLMLSAQ 462

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            +       D E  R     L  L + E  L  +   +   G  +D+D +  L+   AQ 
Sbjct: 463 AVAELADTLDTELERIDSSAL--LQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQR 520

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            +   E   ++    + +      L+  LF    +     ++    +            +
Sbjct: 521 VRDAAESAYEVIGEQV-NLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTE 579

Query: 277 LILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP- 331
               +         +L      L + V+ D R+  T     A+ TGR S      QN+P 
Sbjct: 580 HPFLKHLLEHRDATRLRVTVEGLQKTVADDQRIHTTFNQTVAA-TGRLSSTDPNLQNIPV 638

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R E   +I    + A         P+ + S  +         + L+ AD + IE R++A 
Sbjct: 639 RTEAGRQIRHAFVVA-------PGPVAVGSGNI-------EFESLMTADYSQIEMRIMAH 684

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ ++  I+AF  GED++    ++AF  P+D+V  + R+  K M   L Y   A     +
Sbjct: 685 LSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYGLSA---YGL 741

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-VKDKLIGTACELVKKAW 510
           A+  G+  ++  Q                    M+  +  F  V+D L     E  +  +
Sbjct: 742 AAQLGISREEAKQQ-------------------MEAYFDRFGGVRDYLHRVVEEARRNEY 782

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A   G  +   DL                                D      S+ R+  
Sbjct: 783 TATLFGRRRYLPDL------------------------------NSDNFQRRQSAERMAL 812

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624
           +                              +Q  + DI+   M N  K          +
Sbjct: 813 NAP----------------------------IQGTAADIIKVAMINVQKRLRTEQLSSRM 844

Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
           +L VHDE+V E       +V  L    M     
Sbjct: 845 LLQVHDELVIEVATGEQAAVEALVREEMGGAID 877


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 85/547 (15%), Positives = 157/547 (28%), Gaps = 92/547 (16%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D T             + D     V HN+     +F +              + LA    
Sbjct: 376 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEHGW---RVDGITMDTALAAYLV 432

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P     A  AL+             L       + D      T  +      +      
Sbjct: 433 KPGRRSFALDALSVE----------YLHRELVPAAADGQLAFGTDEHAEADALMAQARAV 482

Query: 165 RDV----EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            D+     A  E       L D E     L   +   G   D   +  ++ L A   ++ 
Sbjct: 483 LDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQA 542

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270
            ++          +      L+   F    +     ++            L     H   
Sbjct: 543 VKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELP 601

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +     RL S+      +  L + V++DGR+  T     A+ TGR S      QN+
Sbjct: 602 VIMLRHREQARLRST------VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNV 654

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389
           P +                              +R   +   G + L+ AD + IE RV+
Sbjct: 655 PVRT------------------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVM 690

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++ ++  I+AF +GED++ T  ++ F     +V  E R   K M   L Y     G +
Sbjct: 691 AHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLS 750

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484
           +     A      +  + +       +      E+                      +  
Sbjct: 751 QQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQ 810

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSI 538
            ++     A+   + GTA ++VK A     + +       +L   + +     +  G   
Sbjct: 811 RREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERD 870

Query: 539 SARRVAN 545
               +  
Sbjct: 871 EVETIVR 877


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 96/620 (15%), Positives = 198/620 (31%), Gaps = 117/620 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGCYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
            +    LA  +  H   K E+       F   S++    Y    A+   + + LF +  K
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNLFTKKLK 500

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D         RL  + + E     +   + + G  +D + + +  + + +E + ++ +I
Sbjct: 501 EDK------LDRL--MHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277
           +K + GI  +      +   LF    + L +  +     I         H +I  L K  
Sbjct: 553 IK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            + +L S+ +     + L E ++    RL  +      + TGR +      QN+P     
Sbjct: 612 QIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 660

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R      NG   + AD + IE  +LA ++ ++
Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             IKAF N +DI+  T +K F     +++   R I K +   + Y+      AK      
Sbjct: 702 VLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITK 761

Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491
                 +  +  +      F                        ++  S++   +     
Sbjct: 762 EEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAER 821

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + G+A +++K A        ++++ +  +      +    +    +   P    
Sbjct: 822 IAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIEEE 873

Query: 552 RRHKRDVHIVLPSSRRLVYS 571
              K+ + I++ ++  L   
Sbjct: 874 NEVKKILKIMMETAYTLNLP 893


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/585 (15%), Positives = 190/585 (32%), Gaps = 104/585 (17%)

Query: 33  CAYAWDDEPVKLWDRTEQ---------SAMP---SDLLQYLRDETVMCVAHNSLFERILF 80
             ++ D   +   D T           +  P   S +++ L D ++  + +N     I  
Sbjct: 367 ITFSLDLHKLYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFL 426

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR-FCKGS 139
              L  +I S   I   +L     L +   +  L      +     E  +     + K +
Sbjct: 427 LNFLRTEITSASCIDDIMLMHYI-LSAGKNDLSLNEIIQTYNKSYSEQYSENKVCWLKNT 485

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            D+              +LF               K L    + +  +  + + I + G 
Sbjct: 486 FDNLMS-----------ELFKN-------------KLLHCYYEIDLPICYILRNIENNGI 521

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +I++ L+ +L   +  + + L++ I K+       +     L   LF +  +    +S+ 
Sbjct: 522 KINVPLLKELSAQLKHKIELLEQQIYKICGQEFNIA-SPKQLGEILFDVLKLPHAKVSQK 580

Query: 260 TLKSILSHSNITQLAK------DLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFY 312
           T         +  L++      DL+L     +      ++TL   ++++  R+  TL   
Sbjct: 581 TKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQT 640

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + +   S      QN+P +                              VRS  +A  
Sbjct: 641 STTTSR-LSSHSPNLQNIPIRS------------------------EYGLKVRSAFVAPQ 675

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G K++ AD + IE R+L++ A  +     F  GEDI+ +T A+ F    D+V++E R   
Sbjct: 676 GSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEEHRRKA 735

Query: 433 KVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------- 474
           K +   + Y     G AK      +     +  + Q   S   + D              
Sbjct: 736 KAINFGVIYGISAFGVAKQLNISNTEAAQYINHYFQEYPSIRQYMDETKKFAVENGYVKN 795

Query: 475 -------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------KHQGVLQL 520
                       S +L  ++     A+   +  TA ++ K A          K+  + +L
Sbjct: 796 MIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSKYPAI-KL 854

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              + +     +      +A  +       +      + + L   
Sbjct: 855 LLQVHDELVFELPNELVDTACNLIKCTMENIPYFSFPLKVELKIG 899


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/491 (16%), Positives = 160/491 (32%), Gaps = 94/491 (19%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           V HN  F+ ++ K    +    +    + +LA        L ++   +     + K   G
Sbjct: 403 VGHNLKFDLMIAKANFNLTPKRE-IQDSMLLAY-------LLDSASMMGLDILMEKFF-G 453

Query: 129 KALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----- 181
           K +IA     K        D  RA          EY   D  A   L +RL         
Sbjct: 454 KKMIAYDEVVKKGKTFGDVDLERA---------SEYASEDAVACFCLQERLKEELQAKRC 504

Query: 182 --------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                   D E     +   +  +G +ID++    L+E +++   + +E+I         
Sbjct: 505 AHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEEIFAHAKQNF- 563

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292
           +      L   LF    +  +   +G          + +L     +  +      I KL 
Sbjct: 564 NINSPKQLSRVLFDDLKLRGLRRVKGG--YSTDEKTLEELKDSHPIIPILMEYREIFKLK 621

Query: 293 ----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
                 + +  + + ++  +    G + TGR S      QN+P +  +            
Sbjct: 622 NTYAEPILKLRTKENKIHTSFSQTGTT-TGRLSSRSPNLQNIPVRTEA------------ 668

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   IA  GKKL+  D + IE R+LA  + +   + AF    DI
Sbjct: 669 ------------GKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLDAFRKDLDI 716

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQ 464
           ++ T    F     + +K +R I K +   L Y  G    ++  K   +     + ++  
Sbjct: 717 HLRTAQMVFG----EDAKNKRHIAKTINFGLIYGMGTRKLSQTLKISNTEAKEYIDRYFA 772

Query: 465 NVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           +  +   F                      +   +    +M+  +    +     G+A +
Sbjct: 773 SFPTVRQFLRTEEEQILRRGYAQTLLGHRRYFNFKGVGDFMRSNFLREGINAIFQGSAAD 832

Query: 505 LVKKAWRAKHQ 515
           L+K +    +Q
Sbjct: 833 LMKLSMNKIYQ 843


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
                +L +  +     ++    +  K   GIDI    +    ++A        L  A  
Sbjct: 369 EAFKAWLANGEMRKRTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +F   + KM+E  A+     K   +       RA  V   ++  E+  R V    ++ 
Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472

Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +            ++ E  L  +   +  +G ++D + +  + E +A   K+++++I
Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279
            KL      +      L + LF    + ++  ++       S   + +L         IL
Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           +  L + V  D  ++         ++TGR S      QN+P +     
Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +    G  +  AD + IE RVLA IA +  
Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 684

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            ++AF +  DI+  T    F    D+V+   R   K +   + Y     G ++       
Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                ++++ ++      + D                       +  S +  ++      
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804

Query: 493 AVKDKLIGT 501
           A+   + G+
Sbjct: 805 AMNTPIQGS 813


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 85/547 (15%), Positives = 157/547 (28%), Gaps = 92/547 (16%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D T             + D     V HN+     +F +              + LA    
Sbjct: 355 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEHGW---RVDGITMDTALAAYLV 411

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            P     A  AL+             L       + D      T  +      +      
Sbjct: 412 KPGRRSFALDALSVE----------YLHRELVPAAADGQLAFGTDEHAEADALMAQARAV 461

Query: 165 RDV----EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            D+     A  E       L D E     L   +   G   D   +  ++ L A   ++ 
Sbjct: 462 LDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQA 521

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270
            ++          +      L+   F    +     ++            L     H   
Sbjct: 522 VKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELP 580

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +     RL S+      +  L + V++DGR+  T     A+ TGR S      QN+
Sbjct: 581 VIMLRHREQARLRST------VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNV 633

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389
           P +                              +R   +   G + L+ AD + IE RV+
Sbjct: 634 PVRT------------------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVM 669

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445
           A ++ ++  I+AF +GED++ T  ++ F     +V  E R   K M   L Y     G +
Sbjct: 670 AHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLS 729

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484
           +     A      +  + +       +      E+                      +  
Sbjct: 730 QQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQ 789

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSI 538
            ++     A+   + GTA ++VK A     + +       +L   + +     +  G   
Sbjct: 790 RREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERD 849

Query: 539 SARRVAN 545
               +  
Sbjct: 850 EVETIVR 856


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 129/365 (35%), Gaps = 54/365 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + +     +   +   G ++D + + +L +    E  K++E+I  L+     +      L
Sbjct: 467 EIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTKF-NIGSQKQL 525

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295
              LF    +   +    T         + +L++D      L+L     +       ++L
Sbjct: 526 GEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKNTYTDSL 585

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + +++  +   T     ++ TGR S      QN+P +                      
Sbjct: 586 PKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSD------------------- 626

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                 + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N EDI+  T  +
Sbjct: 627 -----GNKIREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQ 681

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            FN    +++ E R   K +   + Y     G AK      S     ++Q+    K    
Sbjct: 682 IFNLKKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSTASEYIKQYFAEYKGVQE 741

Query: 472 FEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +    +A +                   H   ++      A+   + GT  +++K A   
Sbjct: 742 YMTQTKACASRNGYVTNFFGRKCFIPLIHDKKLKQFAERAAINAPIQGTNADIIKIAMIK 801

Query: 513 KHQGV 517
             + +
Sbjct: 802 LDKEI 806


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 138/406 (33%), Gaps = 70/406 (17%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E  ++    +D E  L  +   +  
Sbjct: 437 KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEI 496

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311
           ++    + +    + +L     + +         KLN+     L +A   D ++      
Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P ++                             +R   + S
Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429
             G ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R
Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K     + Y     G ++            +  +         + D           
Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                       Q  S +  ++      A+   + G+A +++K A 
Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813



 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M        + G    ++L VHDE++ E P+     +  L 
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 99/567 (17%), Positives = 174/567 (30%), Gaps = 114/567 (20%)

Query: 33  CAY-----AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           CAY     A  ++   L D    ++ P  L +          A ++L          G  
Sbjct: 377 CAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWAIHAL---------RGRG 420

Query: 88  IPSKRWICTSVLARTNGLPS--SLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPP 144
                    + LA     P   S     L+L +    L     G+  ++           
Sbjct: 421 WTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAE 480

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
              T         +       D+ A      E  +    LSD E  L +    I   G  
Sbjct: 481 AAET--------AMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATGIV 532

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
           +D   +  LQ   A +         ++ D  I +      L++ LF    +     ++  
Sbjct: 533 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 591

Query: 261 LK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                           H  +  L       R+  +      ++ L +AV+ DGR+  T  
Sbjct: 592 YSTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVT------VDGLLKAVAEDGRIHTTFN 645

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A+ TGR S      QN+P                            A   +R   + 
Sbjct: 646 QTVAA-TGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVV 680

Query: 371 SNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G   L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PI++V+ E R
Sbjct: 681 GQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELR 740

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---- 481
              K M   L Y     G A   K         +  +         +      ++     
Sbjct: 741 RRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGY 800

Query: 482 -----------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KH 514
                            +   ++     A+   + GTA +++K A             K 
Sbjct: 801 TSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLKS 860

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISAR 541
           + +LQ+  +L         E  +   +
Sbjct: 861 RMLLQVHDELVLEVVASELEEVTALVK 887


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 95/588 (16%), Positives = 180/588 (30%), Gaps = 111/588 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S   + K         A I   +++ +                          
Sbjct: 334 SFDTETTS-LDVRK---------AKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLECAR 383

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPSSLKNAC 113
             + Q  + + V+   HN  ++  + K      +    +   + +LA      +      
Sbjct: 384 ECIEQIFQSQYVI--GHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDTLCNLDF 441

Query: 114 LALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEA 169
           L   +  H     K   GK     F    I     +    +    +QL F      D E+
Sbjct: 442 LMKKYFNHEMIHYKDIVGKNEN--FSNILIQH-ACEYASEDAAACYQLYFKLRGLMD-ES 497

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+ ++       E         +   G +IDL+  L L     ++  ++ E+I  L +
Sbjct: 498 LLEIAQK------VEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQISEEIFVLAN 551

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL--------SHSNITQLAKDLILNR 281
               +      L   LF    ++    ++    +          SH  I ++ +     +
Sbjct: 552 KRF-NLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIPKILEYRESFK 610

Query: 282 LASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           L S+      +  L E   SD   R+  +    G + TGR S      QN+P +      
Sbjct: 611 LYSTY-----IEPLIEHAKSDLEHRIYTSFMQTG-TSTGRLSSKNPNLQNIPVKTL---- 660

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA     L+  D + IE R+LA  + +   I
Sbjct: 661 --------------------EGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDKAMI 700

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHC 455
            AF    DI++ T  K F    +++++E+RA+ K +   L Y  G K      K      
Sbjct: 701 DAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLIYGMGPKKLSETLKINFQEA 757

Query: 456 GLDLQQFSQNVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVK 495
              +Q +  +      F                          E    + +  +    + 
Sbjct: 758 KTYIQNYFTSFPMIKNFLKEQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREGIN 817

Query: 496 DKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGS 537
               G+A +++K A         + + +LQ+  +L       +    +
Sbjct: 818 AIFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIFEAPKEIASKEA 865



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
           I Q  + DI+   M     +     ++L VHDE++ E P          +  +M
Sbjct: 819 IFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIFEAPKEIASKEAKKIALIM 872


>gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum]
          Length = 872

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 92/566 (16%), Positives = 167/566 (29%), Gaps = 107/566 (18%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSKRW 93
           +  D +    +  + +  +    +   RDE          F++  L++K          +
Sbjct: 360 WVHDGDQANFYPFSSEEEVLKR-MSAWRDEGKAVW----CFDQTRLYRKCPRFFALGIPF 414

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           +  + +A     P         L                  F   + D P     R    
Sbjct: 415 VFDATIAAYLLEPGHRDYLLENL--------------AARYFLTDTSDRP--RLVRNVLS 458

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           + W         D          L  +   E  L  +   +   G RID   +   +E I
Sbjct: 459 KLW--------EDAVKE----GLLELVQSIEIPLGRILYQMEVLGIRIDRQALESARESI 506

Query: 214 AQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268
               ++L+E+I +L      I S +Q       L+   G+      +    T +  L+  
Sbjct: 507 EALARELEEEIYRLAGSRFTILSPKQV---GEILYGKLGLPTARKGKTGYSTDEETLTGL 563

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           +      + IL            ++ +S  V + GRL G       + TGR S      Q
Sbjct: 564 SGLHPLPEKILAYRQMKKLLSTYVDPISRGVDAQGRLHGQFN-QTVTATGRLSSSNPNLQ 622

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P +                          A   +R C IA   + L+ AD + IE R+
Sbjct: 623 NIPMRS------------------------PAGREIRKCFIAGENRVLLSADYSQIELRL 658

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV- 447
           LA  + +   +  F   EDI+  T    F  P   V+ E R   K +   + Y   A   
Sbjct: 659 LAHFSEDPELMAVFERNEDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSAFSL 715

Query: 448 ---FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483
                         + ++           D                       +  +   
Sbjct: 716 SLDLGVEPPEAQAFIDRYFGAFPKVGPLFDSILEEAKKTGEVRTILGRKRRIPELSAPDR 775

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAW------RAKHQGVLQLWKDLTEGFACVVQEGGS 537
             ++     AV   L G+A +L+KK+       R     V  L   + +     V+E   
Sbjct: 776 RSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDRPEVGDLLVQVHDELLFEVREDN- 834

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLP 563
                + +    +    +  + + +P
Sbjct: 835 -----LEDASGTIRSLMEGALRLKVP 855


>gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
 gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
          Length = 290

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 105/214 (49%), Gaps = 12/214 (5%)

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
           + S     E  E+      +  P F + D+    AC++ K+AWR  H  +   W+ L   
Sbjct: 82  AASPMPIQEAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCA 140

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT- 582
               +    +           + ++  +  + + LPS R L Y+  +    G  SY+ T 
Sbjct: 141 VTDAIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTH 195

Query: 583 -ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
             T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   
Sbjct: 196 PVTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAA 255

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 256 FNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 289


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 138/406 (33%), Gaps = 70/406 (17%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E  ++    +D E  L  +   +  
Sbjct: 437 KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEI 496

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311
           ++    + +    + +L     + +         KLN+     L +A   D ++      
Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P ++                             +R   + S
Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429
             G ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R
Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K     + Y     G ++            +  +         + D           
Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                       Q  S +  ++      A+   + G+A +++K A 
Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813



 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M        + G    ++L VHDE++ E P+     +  L 
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 83/553 (15%), Positives = 156/553 (28%), Gaps = 75/553 (13%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A +         D T      ++ L  +L D       H      +             
Sbjct: 381 LAISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAHGW---ELG 437

Query: 92  RWICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             +  + LA     P      L + C        L +   G  L                
Sbjct: 438 GVVSDTALAAYLVQPGQRRFDLADLCR-KYLGRELEEDSSGDQLTLDLGGEDGAGSGRQH 496

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             A    A +        +++           L + E  L  +   +   G   D   + 
Sbjct: 497 LLAVRASATRDLAGVLSAELDKRGGTHL----LHEVELPLVDVLARLERAGIAADRPYLE 552

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           +LQ   A   +   E   ++      +      L+  LF   G+      +    +    
Sbjct: 553 ELQGEFAAAGRVAVERAHEIVGREF-NLGSPKQLQQVLFEDLGLPRTKKIKTGYTTDADA 611

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                   D  L  +        KL T    L + V+ DGR+  T     A+ TGR S  
Sbjct: 612 LAWLASQTDNELPAVLLHHRDQTKLRTTVEGLIKTVADDGRIHTTFNQTVAA-TGRLSST 670

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382
               QN+P +                              +R   +   G + L+ AD +
Sbjct: 671 DPNLQNIPVRT------------------------DVGRRIRRAFVVGEGYEELLTADYS 706

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++GE   I AF +G D +    A+ F+  +++V  E R+  K M   L Y 
Sbjct: 707 QIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYGLAYG 766

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----------------- 481
               G ++            ++ +         + +    E+                  
Sbjct: 767 LSAYGLSQQLGITPEESKRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETILGRRRYLPD 826

Query: 482 ----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACV 531
               +   ++     A+   + G+A +++K A       +       ++   + +     
Sbjct: 827 LTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVDAALTEGGLTSRVLLQVHDELVVE 886

Query: 532 VQEGGSISARRVA 544
           V  G       + 
Sbjct: 887 VAPGERAEVENIV 899



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 92/269 (34%), Gaps = 24/269 (8%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  A+   I+         T   +   P  +    +  +G+ +  A     G +  
Sbjct: 641 EGLIKTVADDGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEEL 700

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +      +  + +      H  M  Q  +  V +++ G A   +K 
Sbjct: 701 LT-ADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEV-EQVDGEARSRIKA 758

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                  G+         G            ++R+           +  ++ ++  +RR+
Sbjct: 759 MSYGLAYGLSAYGLSQQLGIT-------PEESKRLMEDYFAEFGGVRDYLNAMVEEARRV 811

Query: 569 VYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------ 620
            Y++ + G   YL   TS   + R    ++  N  +Q  + DI+   M            
Sbjct: 812 GYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVDAALTEGGL 871

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              ++L VHDE+V E        V  + +
Sbjct: 872 TSRVLLQVHDELVVEVAPGERAEVENIVA 900


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 89/525 (16%), Positives = 158/525 (30%), Gaps = 80/525 (15%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L D     V H    +     +  G   +        + L      P     A  AL+  
Sbjct: 400 LGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLE 455

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               ++   +    +   G+ D                L      R  E   E       
Sbjct: 456 YLGRELVPAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGL----- 510

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E     L   +   G   D + + +++   A   ++   +          +     
Sbjct: 511 LTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEF-NLGSPK 569

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA--KDLILNRLASSGSAILKL----N 293
            L+  LF   G++L    +          ++  LA   +  L  L        KL     
Sbjct: 570 QLQEVLFG--GLNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTVE 627

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L ++++ DGR+  T     A+ TGR S      QN+P +                    
Sbjct: 628 GLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------------------- 667

Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   +   G + L+ AD + IE RV+A ++ ++  I AF +GED++ T 
Sbjct: 668 -----DEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTV 722

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
               FN     V  E R   K M   L Y     G ++     A      +  + +    
Sbjct: 723 AGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTYFERFGG 782

Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507
              +      E+                      +   ++     A+   + GTA ++VK
Sbjct: 783 VRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVK 842

Query: 508 KAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            A               + +LQ+  ++    A   +E      RR
Sbjct: 843 IAMLGVDRALREAELTSRMLLQVHDEIVLELAPGEREPVEEILRR 887


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 126/365 (34%), Gaps = 54/365 (14%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + +  +  +   +   G ++D + + +L      E  KL+E+I  L+     +      L
Sbjct: 471 EIDLPVCFVIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVLSGMKF-NIGSPKQL 529

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLNTL 295
              LF    +     S            + +L++      DL+L     +       ++L
Sbjct: 530 GEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRWRQLTKLKNTYTDSL 589

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + + +  R   T     ++ TGR S      QN+P +                      
Sbjct: 590 PKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVPIRS--------------------- 628

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                 + +R   +A  G KL+ AD + IE R+L+ IA      +AF N +DI+  T  +
Sbjct: 629 ---GEGNKIRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQ 685

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            FN   ++++ E R   K +   + Y     G AK      +     ++++    K    
Sbjct: 686 IFNLQKEELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNTEAAEYIKKYFAEYKGVQE 745

Query: 472 FEDWEQAESHHLWMQDQY-------------------PEFAVKDKLIGTACELVKKAWRA 512
           + +  ++ +        +                      A+   + GT  +++K A   
Sbjct: 746 YMEATKSFAQANGYVTDFFGRKCFVPLINDKRLKQFAERAAINAPIQGTNADIIKIAMTL 805

Query: 513 KHQGV 517
             + +
Sbjct: 806 LDREI 810



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 588 MRERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTP 640
            R + +  +   N  +Q  + DI+   M    +          +VL +HDE++ E P   
Sbjct: 776 KRLKQFAERAAINAPIQGTNADIIKIAMTLLDREIEKRKLKTRLVLQIHDELLFEAP--- 832

Query: 641 YFSVGTLCSLM 651
              +  + ++M
Sbjct: 833 ---IDEIETIM 840


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 377 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 428

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 429 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 488

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 489 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 538

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 539 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 597

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 598 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 650

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 651 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 686

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 687 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 746

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 747 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 806

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 807 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 866

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 867 LEVAKGEEEKVREIV 881



 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 829 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 881


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 92/628 (14%), Positives = 191/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485
           AK  +         +  +  +      F   +     +                      
Sbjct: 754 AKELRITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813

Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 90/561 (16%), Positives = 184/561 (32%), Gaps = 80/561 (14%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68
                 +   G+  + E   I L   A ++ PV ++D     +  +   L + L ++ ++ 
Sbjct: 1466 YCGLDIETTGLEVFDEN--IRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIK 1523

Query: 69   VAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            +  N  F+   L      I+     +I + +L +   +     N  +    +  L K ++
Sbjct: 1524 IIQNGKFDAKFLLHNNFKIENIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQ 1583

Query: 128  GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGERD 186
                       +        +        +L  E  K ++    ++  + ++P+ D E +
Sbjct: 1584 NSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKENLHIVNDIENKCILPICDMELN 1643

Query: 187  LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
                       G ++DL+ + K    I  E     +++ K       +      +   L 
Sbjct: 1644 -----------GIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNSQQQVLKALQ 1692

Query: 247  LITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS- 300
                 D+ +      S+  LK+ L+H  I  L     L +L S+         L   ++ 
Sbjct: 1693 KNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRRLYKLYSAF-----YLKLPLHINT 1747

Query: 301  SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
               ++  T      + +GR+S      Q +PRQ                           
Sbjct: 1748 KTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ--------------------------- 1779

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               +R   I ++    ++AD   IE ++ A I  ++  +KA+ N  D++  T +      
Sbjct: 1780 -KNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKN 1838

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAE 479
            I  ++KE R I K +   L Y       K  A+          Q      S FE ++   
Sbjct: 1839 IPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIY 1898

Query: 480  SHHLWMQDQYP------------------EFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
              H  ++ +                      A+   + GT  +++K A    +       
Sbjct: 1899 KWHNQVKQKRALQYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLALVDLYDN----L 1954

Query: 522  KDLTEGFACVVQEGGSISARR 542
            KD+       V +   I   +
Sbjct: 1955 KDINGKIILCVHDEIIIEVNK 1975



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 12/122 (9%)

Query: 535  GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
            G ++S  +           +K                  K    Y   +  +++      
Sbjct: 1875 GLNMSLDQCLYFYNSFFEHYKGIYKWHNQ-------VKQKRALQYSTLSNRKVIFPYFSF 1927

Query: 595  GKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCS 649
             K     VQ    DIL   +     N       I+L VHDEI+ E        ++  L  
Sbjct: 1928 TKALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQ 1987

Query: 650  LM 651
             M
Sbjct: 1988 SM 1989


>gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage]
          Length = 234

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 101/234 (43%), Positives = 140/234 (59%), Gaps = 8/234 (3%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           DM   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GA
Sbjct: 1   DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371
           SRTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA 
Sbjct: 61  SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426
            GKKLV++DL+ IE R+LAW+AGE+WK+ AF+      G+D+Y   YA+AF      V+K
Sbjct: 121 XGKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTK 180

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            QR IGKVMEL LGY GG   F T A   GLDL + ++            +A S
Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAALPNIPHNVKREAIS 234


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 382 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 433

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 434 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 493

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 494 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 543

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 544 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 602

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 603 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 655

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 656 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 691

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 692 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 751

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 752 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 811

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 812 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 871

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 872 LEVAKGEEEKVREIV 886



 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 834 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 886


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485
           AK            +  +  +      F   +     +                      
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813

Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 147/399 (36%), Gaps = 64/399 (16%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 220 DLYKILM---ENEMPLIQVLSLMERKGIEIDIQYFKNYSLELDKELLRIEKAIYEEAGEE 276

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 277 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 335

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P +              
Sbjct: 336 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 383

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 384 -------------GIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 430

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 431 LHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 490

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     ++FE                          +S +  ++ Q    AV   + GT
Sbjct: 491 FEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 550

Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEG 535
           A E++KK         K +  + L   + +     V+E 
Sbjct: 551 AAEVLKKVMVKVYDVLKDKEDITLLLQVHDELIFEVEEN 589



 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 519 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDITLLLQV 578

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  +        +   +M
Sbjct: 579 HDELIFEVEENSVEKYSEILADIM 602


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 139/427 (32%), Gaps = 62/427 (14%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
            EPV           P  +L  L+    +  +    HN  F+ I+   +    +      
Sbjct: 443 GEPV---------LNPDTVLAALKPVFENPAIEKRNHNIKFDLIVLAAS---GVELAGVA 490

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEH-------LTKMEEGKALIARFCKGSIDSPPYDC 147
             S++A     P +  +    L   E           +  GK  I            Y C
Sbjct: 491 GDSMVAHYLLDPGARAHGLDDLTLDELRHTNISIKELIGTGKKQITMAEVPVARVRDYAC 550

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             A+            + D    REL+  L      E  L  +   +   G R+D+  ++
Sbjct: 551 EDADAALQ-LAAAFEPRLDAAGLRELYDTL------EVPLIRVLAEMEHVGIRVDVPFLV 603

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
           +L   + +E    + DI  L      +      L+  LF    + +   +    +     
Sbjct: 604 QLGVQMGEELAGYEGDIHALAGRAF-NIGSLKELQKILFDELKLPVQKRTGIKNEPSTDQ 662

Query: 268 SNITQLAKD-LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321
            ++ +LA     L +   +   + KL +     L      +GR+  +     A  TGR S
Sbjct: 663 ESLERLAALGHELPKKLLAYRKVSKLKSTYVDVLPALADKNGRVHTSFNQASA-ETGRLS 721

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P +                              +R   I  +G  LV AD 
Sbjct: 722 SSEPNLQNVPTRT------------------------EQGAQLRKAFIPRDGWVLVTADY 757

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+L    G+D    AFA   D++    A+ F  P  +V+K QR + K +   + Y
Sbjct: 758 SQIELRLLTHFCGDDTLRAAFAEDRDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLY 817

Query: 442 QGGAKVF 448
              A   
Sbjct: 818 GMSATGL 824


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485
           AK            +  +  +      F   +     +                      
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813

Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 66/434 (15%), Positives = 142/434 (32%), Gaps = 76/434 (17%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            LF        EA  + F         E  L      +   G+ +D   +  ++  +  +
Sbjct: 432 ALFAAQVWEKEEAALQQFGLTDLYERIEAPLLYTLSVMETNGFTVDTARLQAMKTALTAQ 491

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HS 268
              L+ +I +       +      L   LF +  + +   ++    T   +L      H 
Sbjct: 492 AAALENEIYEAAGAAF-NINSPKQLGHMLFEVLHLPVRKKTKTGYSTDAEVLESLRDAHP 550

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
            + ++ +   L +L S+      L+ L    V + GR+  +      + TGR S      
Sbjct: 551 AVEKIVRFRALKKLISTY-----LDGLEPLIVPATGRVYTSF-HQTVTATGRLSSSDPNL 604

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386
           QN+P +                              +RS  +   G   ++  D + IE 
Sbjct: 605 QNIPIRT------------------------EQGKKIRSLFVPGKGYDYILSGDYSQIEL 640

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442
           R+LA ++ +   I  F   +DI+  T ++ F+ P ++V+ E+R+  K +   + Y     
Sbjct: 641 RLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKAVNFGIIYGISDF 700

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481
           G A+      +     ++ +     +   + +                          S 
Sbjct: 701 GLARNIGISRAQAKQYIESYFARYSTIHGYMEELVRQAKETGITRTMFGRMRTLTDINSK 760

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531
           +   +      A+   + G+A +++K A  A          + + ++Q+  +L       
Sbjct: 761 NFTRRSLAERMAMNTPIQGSAADIIKLAMNAVQRELEQRQLRSRLLVQVHDELVLEVPAD 820

Query: 532 VQEGGSISARRVAN 545
             E      +R   
Sbjct: 821 ELELVKTLLKRTME 834


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483
           AK            +  +  +      F                        ++  S++ 
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 92/628 (14%), Positives = 191/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEILIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485
           AK  +         +  +  +      F   +     +                      
Sbjct: 754 AKELRITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813

Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/620 (15%), Positives = 195/620 (31%), Gaps = 117/620 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
            +    LA  +  H   K E+       F   S++    Y    A+   + + LF +  K
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNLFTKKLK 500

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D         RL  + + E     +   + + G  +D + + +  + + +E + ++ +I
Sbjct: 501 EDK------LDRL--MHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277
           +K + GI  +      +   LF    + L +  +     I         H +I  L K  
Sbjct: 553 IK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            + +L S+ +     + L E ++    RL  +      + TGR +      QN+P     
Sbjct: 612 QIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 660

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R      NG   + AD + IE  +LA ++ ++
Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             IKAF N +DI+  T +K F     +++   R I K +   + Y+      AK      
Sbjct: 702 VLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITK 761

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPE 491
                 +  +  +      F   +     +                        +     
Sbjct: 762 EEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAER 821

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A+   + G+A +++K A        ++++ +  +      +    +    +   P    
Sbjct: 822 IAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIEEE 873

Query: 552 RRHKRDVHIVLPSSRRLVYS 571
              K+ + I++ ++  L   
Sbjct: 874 NEVKKILKIMMETAYTLNLP 893


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485
           AK            +  +  +      F   +     +                      
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813

Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485
           AK            +  +  +      F   +     +                      
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813

Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 849 LEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483
           AK            +  +  +      F                        ++  S++ 
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/567 (16%), Positives = 185/567 (32%), Gaps = 83/567 (14%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILFKKTL 84
           E+A      +++           E+   P D +  L+       V  N  F+  L     
Sbjct: 356 EKAYYVPVGHSYLG--------VEEQVDPEDAVAALKKLMKQKIVGQNLKFDLSLLYNQY 407

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G++     +  T ++A      S +    LA  F ++   M+  K ++ +  +       
Sbjct: 408 GMEEVLP-FADTMIMAWLTDPGSRVGLDSLAQKFFKYD--MKPFKEMVKK-GENFSHVNI 463

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRE-LFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            D T      AW  F  Y     +     L   L    D E     +   +   G ++D 
Sbjct: 464 ADATFYAAEDAWMTFLLYGAIKKKMELSSLTHLLKEAKDVEYPFINVLIRMERLGIKVDQ 523

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
             +  L++ ++++  +L  +I +L+     + R T  L + LF   G+     ++     
Sbjct: 524 VKLETLKKTLSEDLHRLTSEIHELSGSEF-NIRSTQQLGVVLFQHLGLKGGKKTK--TGY 580

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILK-----LNTLSEAVSSD--GRLRGTLQFYGASR 316
             + + +  L  +  +           K     +  L +    D   R+  +    G + 
Sbjct: 581 STNEAVLQSLKHEHPVIGKILEYREYHKMLSTYVEPLLKLAKKDEKSRIYTSFIQTG-TA 639

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P +                              VR   +A  G KL
Sbjct: 640 TGRLSSKDPNLQNIPVRS------------------------TLGRSVREAFVAKEGYKL 675

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V  D + IE R+LA  + +   ++AF  G DI++ T  K F    ++ +K +R   K + 
Sbjct: 676 VSIDYSQIELRLLAHFSKDAALMEAFNKGTDIHMATAVKLFG---EEEAKAKRNFAKSVN 732

Query: 437 LALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTF-------------------- 472
             L Y  G K         ++     +  +  +  +   F                    
Sbjct: 733 FGLLYGMGPKKLSDELGITSAEAKEIIANYFASFPTVKNFLEGIQERVKIDGYVETLLKR 792

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ------LWKDLTE 526
                 E+ +   +  Y   +V     G+A +L+K +       ++       +   + +
Sbjct: 793 RRIFDYENANGMQKAAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHD 852

Query: 527 GFACVVQEGGSISA-RRVANVPRLVMR 552
                ++E       +R  +V   +  
Sbjct: 853 ELIFEIREDQVEKISKRFVHVMEHIWE 879


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 160/461 (34%), Gaps = 83/461 (18%)

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL------- 190
              + P       +     +   E    D+   REL   L P+ D  R  WL+       
Sbjct: 489 VDAEQPAQGVLDFDDEHTEEDLNERRVHDLAVIRELAVTLGPVIDERRQYWLMRAIELPV 548

Query: 191 ---DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
                 +   G +ID   +  +++  A + ++  E   +   G I + +    L+  LF+
Sbjct: 549 SRVLHGMEQSGAKIDRSRLTDMRDRFAADARQAQEMAWQYAGGEI-NLQSPKQLQKVLFV 607

Query: 248 ITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSE 297
             G+     ++          L+++  HS   + A   +   L    +  LK  + TL +
Sbjct: 608 DMGLKPTKRTKNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRETNKLKQIVQTLID 667

Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           A +  D R+  T +   A+ TGR S      QN+P +                       
Sbjct: 668 ATNKADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR----------------------- 703

Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +RS  +   G + L+  D + +E R++A ++G++  I+AF +G D +    + 
Sbjct: 704 -NAVGREIRSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASM 762

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            +  P+D+++ +QR+  K M   L Y     G A+              ++         
Sbjct: 763 VYGVPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLNIAQREAEALKNRYFDTFGKVHD 822

Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +   A +                      +   +D     A+   + G+A +++K A 
Sbjct: 823 YLESLVATAREKGYTETIFGRRRYFPALRSTNRMARDAAERAALNAPIQGSAADIMKIAM 882

Query: 511 RAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541
               Q           +LQ+  +L    A    E  +   R
Sbjct: 883 IRAGQALDEAGVKSRIILQIHDELVVEIAPGESEQVTELIR 923


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483
           AK            +  +  +      F                        ++  S++ 
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 849 LEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 849 LEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L +     +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483
           AK            +  +  +      F                        ++  S++ 
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/628 (14%), Positives = 192/628 (30%), Gaps = 133/628 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L       +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKNYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484

Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D + + +  + + +E
Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483
           AK            +  +  +      F                        ++  S++ 
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +      A+   + G+A +++K A        ++++ +  +      +    +    +
Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              P       K+ + I++ ++  L   
Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 147/398 (36%), Gaps = 64/398 (16%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+   + E  L  +   +  +G  ID+         + +E  K+++ I +     
Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P +              
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 669 -------------GIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 715

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     ++FE                          +S +  ++ Q    AV   + GT
Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835

Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534
           A E++KK         K +  + L   + +     V+E
Sbjct: 836 AAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIFEVEE 873



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQV 863

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  ++       +   +M
Sbjct: 864 HDELIFEVEESSVEKYSEILADIM 887


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 140/419 (33%), Gaps = 75/419 (17%)

Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           DV A  EL + L              D E  L  +   +   G  +D+  + +  +    
Sbjct: 477 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 536

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  + +E   +L +    +      L++ LF   G+     ++    +  +      +  
Sbjct: 537 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 596

Query: 276 DLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                    +     K    L  L   V+ DGR+  T     AS TGR S      QN+P
Sbjct: 597 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIP 655

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
            +  +                           +RS  +   G   L+ AD + IE RV+A
Sbjct: 656 VRTEA------------------------GRKIRSGFVVGEGYETLLTADYSQIEMRVMA 691

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            ++ +   I+A+  GED++    +K FN PID V+ E R   K M   L Y     G ++
Sbjct: 692 HLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQ 751

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485
                A      ++ + +       +      E+                      +   
Sbjct: 752 QLSIPAGEAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVA 811

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           ++     A+   + GTA +++K A             K + +LQ+  +L    A    E
Sbjct: 812 RENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELE 870



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%)

Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKV 447
           +  I+  A    I+ T      +  +  +T  +  +   R     K+         G + 
Sbjct: 618 EGLIREVAPDGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-GFVVGEGYET 676

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             T A +  ++++  +   +     E + + E  H ++            + G   EL +
Sbjct: 677 LLT-ADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYV----GSKVFNVPIDGVTPELRR 731

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +  +A   G++             +  G    A+++           +R +  ++  +R+
Sbjct: 732 QV-KAMSYGLVYGLSAFGLSQQLSIPAG---EAKQIMESYFERFGGVQRYLREIVEEARK 787

Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------K 619
             Y++   G   YL   TS     R    +   N  +Q  + DI+   M           
Sbjct: 788 AGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAA 847

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               ++L VHDE+V E        V  +  
Sbjct: 848 VKSRVLLQVHDELVVEVAAGELEQVREILE 877


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 102/617 (16%), Positives = 207/617 (33%), Gaps = 110/617 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           L   L D  +  + HNS ++  +L +  L +       +    +   N    +LKN    
Sbjct: 192 LKPILTDVNIGKILHNSKYDIHMLIRHGLRLRGIKHDTMIAMAVLNENEPTLALKNLAT- 250

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + ++    ++       F K S    P D               Y  +D   T EL+K
Sbjct: 251 -KYGKYFGFEDKSYTYEELFGKTSFAEIPLDAALV-----------YAAKDTHLTYELYK 298

Query: 176 RL-----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                        +   + E  L  +   +   G+ ID+D  ++ +  +  E   L+ ++
Sbjct: 299 WQRQHLNQKESLRLIYDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANL 358

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLIL 279
            +    I  +      L   L+    + ++   E      TLK +   +    +  D++L
Sbjct: 359 TEHFGDI--NFNSPLQLAAVLYDKLKLPVIKGKERSTDVKTLKKLRDETKHEGI--DVLL 414

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                +      +  L + +  DG L G+     A+ TGR++      QNLP        
Sbjct: 415 KYRELTKLLGTYVEALPQLIKKDGLLHGSFN-QVATVTGRFASREPNLQNLP-------- 465

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                    R  I+A     ++  D + IE RVLA ++G+    
Sbjct: 466 ----------------------PRARRLIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQ 503

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           + +  G+D+Y T  ++ F    ++     + R + KV  LA+ Y        T+A   G+
Sbjct: 504 EPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMYGTS---MWTLADQLGI 560

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +++ +Q ++    F  +    +      +   +    + L G              +  
Sbjct: 561 TVEEANQFIED--FFATYPDVYAFICATHEFAKQNEYVETLYGR-------------KRR 605

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYSDVKG 575
               ++       +V +  +     +     +      +K+++ ++L    R V    KG
Sbjct: 606 FPGHRE-----KAIVYDKLATEICEILGTKAVPYDYWQYKKELPVILRRQFRAV----KG 656

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           +   +                     +Q  + DI+   + N   +G  I+ TVHDE +  
Sbjct: 657 EVERVRRM-------------AVNARIQGTAADIMKRALINLYNDGRKIIGTVHDEALLI 703

Query: 636 TPDTPYF-SVGTLCSLM 651
                    V  + + M
Sbjct: 704 VNKNITLAEVEKIEACM 720


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 161/466 (34%), Gaps = 69/466 (14%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARF 135
           FK  L      K      ++A       + ++  + L+          K   GK   ++ 
Sbjct: 408 FKDILNEGYEIKNIHFDVMIAYFLLTAQTKESIEVVLHNETGDDFPLYKDIFGKEDPSKL 467

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                       + + +     L       D     +LF       + E  L L+   + 
Sbjct: 468 PVEEYGEFMMKRSESLYDIYKDLKNRIELED---MHDLFY------NVEMKLILILSKME 518

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  ID +   +    ++ + ++L ++I K+++    +      L   LF+   I+ V 
Sbjct: 519 QEGIAIDPEYFREFSLELSDKLQELKKNIFKISEEEF-NLNSPKQLAEILFMKLNIEPVS 577

Query: 256 MSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
            ++      +  + +  +  +   + IL+    +      ++ L +      RL  T   
Sbjct: 578 KTKTGFSTNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERNRLHTTFNQ 637

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA+ TGR S      QN+P                                +R   I+ 
Sbjct: 638 TGAA-TGRLSSSNPNLQNIP------------------------VKSDEGIKIRRGFISD 672

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  L+  D + IE RVLA ++ ++  IKA+++G D++  T  K F+   D V++ QR +
Sbjct: 673 KGNTLLAIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDIDTD-VTRSQRTM 731

Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475
            K++  ++ Y     G +K            ++++ +        E+             
Sbjct: 732 AKIVNFSIIYGKTPFGLSKELGISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVK 791

Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                    +   S +  ++ Q    AV   + GTA +++KK    
Sbjct: 792 TYFGRKRSVDGISSKNGNIKKQADRMAVNTVIQGTAADILKKVMIE 837



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 16/131 (12%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTATSQ 586
           + Q+      +R       V    ++ +     +     Y   K    G  S       Q
Sbjct: 754 ISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVKTYFGRKRSVDGISSKNGNIKKQ 813

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGM-----KNATKNGYDIVLTVHDEIVSETPDTPY 641
             R           ++Q  + DIL + M     K   KN   + L VHDE++ E  D   
Sbjct: 814 ADRMA------VNTVIQGTAADILKKVMIEIDKKIKDKNDIKMNLQVHDELIFEVKDESV 867

Query: 642 FSVGT-LCSLM 651
                 + ++M
Sbjct: 868 EKYADLIKNIM 878


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 138/408 (33%), Gaps = 74/408 (18%)

Query: 146 DCTRANHVQAWQLFGEYCKR-DV----------EATRELFKRLIPLSDGERDLWLLDQTI 194
              +    +  +LFG++ ++ D           +  ++    L   +D E  L  +   +
Sbjct: 437 KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEM 494

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++
Sbjct: 495 EIQGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVI 553

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
             ++    + +    + +L     + +         KLN+     L +A   D ++    
Sbjct: 554 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY 611

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P ++                             +R   +
Sbjct: 612 -LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFV 645

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKE 427
            S  G ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ +
Sbjct: 646 PSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPD 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474
            R   K     + Y     G ++            +  +         + D         
Sbjct: 706 MRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKARED 765

Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                         Q  S +  ++      A+   + G+A +++K A 
Sbjct: 766 GYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M        + G    ++L VHDE++ E P+     +  L 
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELV 853


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/543 (14%), Positives = 158/543 (29%), Gaps = 74/543 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L Q+L D     + H++           G     K  I  + LA     P         L
Sbjct: 373 LRQWLMDPHYPKIVHSAKEAWHALHSFSG---GVKGVIADTELAAYLAFPDQRSYGLEDL 429

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +       +                           +           + ++A       
Sbjct: 430 SIRYVSRDITPVAHQAQ---GSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSL 486

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                + E  L ++   +   G  +DL+ +  L    A +  +  +   +     + +  
Sbjct: 487 TALYQEMELPLTVVLAQMEHVGVAVDLEQLRSLDAFFAHQGSEAQKAAFEAIGRQV-NLG 545

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL---- 292
               L+  LF    +      +    +  +      +       +         KL    
Sbjct: 546 SPKQLQEVLFDQLDMPKTKKIKTGYTTDAASLADLFVKTGHPFLQHLLEYRDSTKLRQTV 605

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L ++V+ DGR+  T Q   A+ TGR S      QN+P +  +                
Sbjct: 606 EGLLKSVADDGRVHTTFQQTVAA-TGRLSSTDPNLQNIPIRTET---------------- 648

Query: 353 IADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R   +   G   L+ AD + IE R++A ++ +D  I AF  GED++  
Sbjct: 649 --------GRRIRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNF 700

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467
             A+ F   ID+V+ + R+  K M   L Y     G +K            +  +     
Sbjct: 701 VGARVFGVSIDEVTPQMRSKVKAMSYGLAYGLSAFGLSKQLNISVGEASTLMDDYFTRFG 760

Query: 468 STSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELV 506
               +     A +                      +   ++     A+   + G+A +++
Sbjct: 761 GVRDYLTSVVARARTTGYTETIMGRRRYLPDLTSDNRQRRENAERVALNAPIQGSAADVI 820

Query: 507 KKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           K+A               +L   + +     V  G    A R+      V       + +
Sbjct: 821 KQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQEIAERI------VREEMAGAMQL 874

Query: 561 VLP 563
            +P
Sbjct: 875 SVP 877



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
           +Q  + D++ + M               ++L +HDE++ E           +    M 
Sbjct: 812 IQGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQEIAERIVREEMA 869


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/496 (16%), Positives = 158/496 (31%), Gaps = 69/496 (13%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGL-PS 107
                + L  +L D   + V H+S   R+L  +  + +          S L    GL P 
Sbjct: 328 GEGALALLRGWLEDSARLKVVHDSKRLRVLLARYGVSLSGVVADPRLESFLVDPTGLVPH 387

Query: 108 SLKNACLAL---NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYC 163
            +     A          + +  GK         +  +  + C RA+ V   W    E  
Sbjct: 388 RIDQLVKAFLQRTVPPAKSVLGSGKKARRFAELAASVTGAWACQRADVVVTMWPQIRERL 447

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +           +L  L + +  L  +  T+   G R++   + ++         +L+ +
Sbjct: 448 EE--------VDQLPHLQEVDLPLSEVLATMELAGVRVEPTELEEMSAEFRATLLQLEAE 499

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +       +      L + LF    + ++  ++    T   +L           L+L 
Sbjct: 500 IWRQAGREF-NVASPKQLGVVLFEELNLPVIKRTKTGYSTAAEVLERLTREHPIAGLLLQ 558

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +         L  A++   GR+  T Q   A+ TGR        Q  P +      
Sbjct: 559 HRKLAKLLTTYTEVLRAAINPVTGRVHPTFQQTYAA-TGRLISTNPDIQKTPVRT----- 612

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I + G +++ AD + IE R+LA  + +   +
Sbjct: 613 -------------------PEGKRIRRAFIPAPGWRIISADWSQIELRLLAHFSSDPNLL 653

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HC 455
           +AFA  ED++  T A+ F    + V+  QR++ K +  A  Y  GA              
Sbjct: 654 EAFAQDEDVHRRTAAELFGCVPEAVTDAQRSVAKTVNFATIYGQGATALGQRLGLKRTEA 713

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              + ++ Q       + D                       +  S+   ++      A 
Sbjct: 714 KGYISRYFQAYAGVREWLDRTIEGALASGYVETLLGRRRVIPELSSNSAMVRQVGMRMAA 773

Query: 495 KDKLIGTACELVKKAW 510
              + G+A +L K   
Sbjct: 774 NTPIQGSAADLCKLVM 789


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 137/406 (33%), Gaps = 70/406 (17%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E   +    +D E  L  +   +  
Sbjct: 437 KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 496

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311
           ++    + +    + +L     + +         KLN+     L +A   D ++      
Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P ++                             +R   + S
Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429
             G ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R
Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K     + Y     G ++            +  +         + D           
Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                       Q  S +  ++      A+   + G+A +++K A 
Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813



 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M        + G    ++L VHDE++ E P+     +  L 
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 137/406 (33%), Gaps = 70/406 (17%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E   +    +D E  L  +   +  
Sbjct: 437 KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 496

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311
           ++    + +    + +L     + +         KLN+     L +A   D ++      
Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P ++                             +R   + S
Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429
             G ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R
Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K     + Y     G ++            +  +         + D           
Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                       Q  S +  ++      A+   + G+A +++K A 
Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813



 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M        + G    ++L VHDE++ E P+     +  L 
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 137/406 (33%), Gaps = 70/406 (17%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E   +    +D E  L  +   +  
Sbjct: 437 KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 496

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311
           ++    + +    + +L     + +         KLN+     L +A   D ++      
Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P ++                             +R   + S
Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429
             G ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R
Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474
              K     + Y     G ++            +  +         + D           
Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767

Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                       Q  S +  ++      A+   + G+A +++K A 
Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813



 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+   M        + G    ++L VHDE++ E P+     +  L 
Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 140/419 (33%), Gaps = 75/419 (17%)

Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           DV A  EL + L              D E  L  +   +   G  +D+  + +  +    
Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  + +E   +L +    +      L++ LF   G+     ++    +  +      +  
Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571

Query: 276 DLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                    +     K    L  L   V+ DGR+  T     AS TGR S      QN+P
Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIP 630

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
            +  +                           +RS  +   G   L+ AD + IE RV+A
Sbjct: 631 VRTEA------------------------GRKIRSGFVVGEGYETLLTADYSQIEMRVMA 666

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            ++ +   I+A+  GED++    +K FN PID V+ E R   K M   L Y     G ++
Sbjct: 667 HLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQ 726

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485
                A      ++ + +       +      E+                      +   
Sbjct: 727 QLSIPAGEAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVA 786

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           ++     A+   + GTA +++K A             K + +LQ+  +L    A    E
Sbjct: 787 RENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELE 845



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%)

Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKV 447
           +  I+  A    I+ T      +  +  +T  +  +   R     K+         G + 
Sbjct: 593 EGLIREVAPDGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-GFVVGEGYET 651

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             T A +  ++++  +   +     E + + E  H ++            + G   EL +
Sbjct: 652 LLT-ADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYV----GSKVFNVPIDGVTPELRR 706

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +  +A   G++             +  G    A+++           +R +  ++  +R+
Sbjct: 707 QV-KAMSYGLVYGLSAFGLSQQLSIPAG---EAKQIMESYFERFGGVQRYLREIVEEARK 762

Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------K 619
             Y++   G   YL   TS     R    +   N  +Q  + DI+   M           
Sbjct: 763 AGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAA 822

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               ++L VHDE+V E        V  +  
Sbjct: 823 VKSRVLLQVHDELVVEVAAGELEQVREILE 852


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 138/421 (32%), Gaps = 64/421 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G+ +D D +    + +  E   + + I +       +      L
Sbjct: 439 EMELPLARVLADMERIGFAVDADGIRAFGDSLRGELDGILQSIYEEVGYEF-NVNSPKQL 497

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF   G+     +  +       + +  L     +           KL       L 
Sbjct: 498 GEALFDKLGLPPRKKT--SRGYSTDAATLESLRPYSPVIDQILKYRTYAKLLSTYVEGLL 555

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            A ++DGR+  T     A RTGR S      QN+P +                       
Sbjct: 556 SAQAADGRVHSTFIQTEA-RTGRISSTEPNLQNIPIRT---------------------- 592

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +A  GK+LV AD + IE R+LA I G++   +AF +G DI+ +T AK 
Sbjct: 593 --ELGSRLRGFFVAGAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKI 650

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472
           ++ P  +V+ + R+  K +   + Y  GA    K            L+ +         +
Sbjct: 651 YHIPESEVTPQLRSASKAINFGIMYGKGAFSLSKDLDVSVKEADAFLKTYLATFPKVDGY 710

Query: 473 EDWEQA---------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                A                      S +  ++      A    + GTA +++K A  
Sbjct: 711 MQDCIAHAKEKGYVETLFGRRRALPELASSNFQVRASGERMARNTPIQGTAADIIKLAMV 770

Query: 512 AKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              Q +       +L   + +       E      +RV       + ++   +   + + 
Sbjct: 771 HVWQRLRDEKLEARLLLQVHDELIVEAPEAEVEEVKRVLREEMEQVVQYSVPLTTDVGTG 830

Query: 566 R 566
           +
Sbjct: 831 K 831


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 117/370 (31%), Gaps = 56/370 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E     L   +   G + D   + +++   A   ++   +          +     
Sbjct: 515 LTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVGHEF-NLGSPK 573

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+  LF    +     ++    +            +  L  +        KL      L
Sbjct: 574 QLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQAKLRSTVEGL 633

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            ++++ DGR+  T     A+ TGR S      QN+P +                      
Sbjct: 634 IKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--------------------- 671

Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE RV+A ++ ++  I AF +GED++ T   
Sbjct: 672 ---DEGRAIRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 728

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             F      V  E R   K M   L Y     G ++     A      +  + +      
Sbjct: 729 YVFGVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTYFERFGGVR 788

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +      E+                      +   ++     A+   + GTA ++VK A
Sbjct: 789 DYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIA 848

Query: 510 WRAKHQGVLQ 519
                + + +
Sbjct: 849 MLNVDRALRE 858


>gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 199

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/204 (36%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
            E+      +Q P F + D+    AC++ K+AWR  H  +   W+ L       +    +
Sbjct: 1   MEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPET 59

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRER 591
                      + ++  +  + + LPS R L Y+  +    G  SY+ T   T +  R  
Sbjct: 60  AHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRIT 114

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM
Sbjct: 115 TYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALM 174

Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675
              P WA+GLPL AEG+E  RYRK
Sbjct: 175 ATPPPWAQGLPLAAEGFETHRYRK 198


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/588 (14%), Positives = 175/588 (29%), Gaps = 96/588 (16%)

Query: 34  AYAWDDEPVKLWDRTEQSAM-----PSDLLQY--------LRDETVMCVAHNSLFERILF 80
            +A     V        S       PS L +         + D     V HN+     + 
Sbjct: 365 TWALGSGSVSEIALATGSGPAAFFDPSQLDEADERTFAEWIADPDRPKVLHNAK---GIM 421

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL-IARFCKGS 139
           +               + LA     P        AL+      ++    A    +   G+
Sbjct: 422 RVFAEHGWSVAGVTMDTALAAYLVKPGRRSFELDALSVEYLGRELSPAVAADSGQLAFGA 481

Query: 140 IDSPPYDC---TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
            D    D         +   + FG    +DV A   L    +P+S+       L   +  
Sbjct: 482 DDEAERDALMIKARTILDLGEAFGGRL-KDVGAAGLLHDMELPVSE-------LLARMER 533

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G   D   + ++++  A   +   ++          +      L+  LF   G+     
Sbjct: 534 SGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGHEF-NLGSPKQLQEVLFGELGLPKTKK 592

Query: 257 -------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                      L  +   ++  +L   ++ +R  +   +   +  L + ++   R+  T 
Sbjct: 593 TKTGYTTDADALAWLAGQTD-HELPVIMLRHREQARLRST--VEGLIKTIAPGSRIHTTF 649

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A+ TGR S      QN+P +                              +R   +
Sbjct: 650 NQTVAA-TGRLSSTDPNLQNIPVRT------------------------DEGRAIRRGFV 684

Query: 370 ASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
             +G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  ++ F+     V  E 
Sbjct: 685 VGDGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEM 744

Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--- 481
           R   K M   L Y     G ++            ++ F +       +      E+    
Sbjct: 745 RRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMENFFERFGGVRDYLQRVVEEARATG 804

Query: 482 ------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL----- 518
                             +   ++     A+   + GTA ++VK A       +      
Sbjct: 805 YTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTGEKLS 864

Query: 519 -QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
            ++   + +     +  G       +              + + + S 
Sbjct: 865 SRMLLQVHDEIVLEIAPGERERVEELVRREMTGAFGLSAPLDVSVGSG 912



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 85/270 (31%), Gaps = 26/270 (9%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  A G  I+         T   +   P  +    +   G+ +        G +  
Sbjct: 633 EGLIKTIAPGSRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGDGFESL 692

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         +       V  
Sbjct: 693 MT-ADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQ---------VFSVDKSAVDP 742

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +          F    Q G +   AR++           +  +  V+  +R 
Sbjct: 743 EMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMENFFERFGGVRDYLQRVVEEARA 802

Query: 568 LVYSDVK-GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN--GYD 623
             Y++   G   YL   TS   + R    ++  N  +Q  + DI+   M        G  
Sbjct: 803 TGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTGEK 862

Query: 624 I----VLTVHDEIVSETPDTPYFSVGTLCS 649
           +    +L VHDEIV E        V  L  
Sbjct: 863 LSSRMLLQVHDEIVLEIAPGERERVEELVR 892


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 127/385 (32%), Gaps = 64/385 (16%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L    + E+ L  +      RG  +D  ++ ++  +  Q+ + L   + +L      +
Sbjct: 437 EVLSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGMEF-N 495

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                 L   LF    +        T   +L            IL               
Sbjct: 496 LNSPKQLAEVLFDHLKLPTKKK-RSTAVDVLEGLIEEHAIIAPILEYRKYQKLYSTYAVG 554

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L++ + +DG++  +   + A++TGR S      QN+                        
Sbjct: 555 LTKHIHADGKIHTSFNQH-ATQTGRLSSSDPNLQNIS----------------------- 590

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 +  +R   +AS G  L+  D + IE RVL+++A E   ++AF  G DI+  T  
Sbjct: 591 -VRDEETRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAK 649

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
             F    D V+   R   K +   + Y       +K            + ++++   + +
Sbjct: 650 AIFGV--DDVTSTMRRQAKSVNFGIVYGMSEYGLSKQLDITIPEARHFITRYNEIYPNIT 707

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + D                       +    +  ++D     A+   + GTA +++K A
Sbjct: 708 KYMDSVVEDCLRDGYVKTLFNRRRYIPEIYDANRAVKDFGKRAAMNAPIQGTAADIIKIA 767

Query: 510 WRAKHQ----------GVLQLWKDL 524
                +           +LQ+  +L
Sbjct: 768 MIKADELLTSNNYKSSMILQVHDEL 792


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 140/419 (33%), Gaps = 75/419 (17%)

Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           DV A  EL + L              D E  L  +   +   G  +D+  + +  +    
Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  + +E   +L +    +      L++ LF   G+     ++    +  +      +  
Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571

Query: 276 DLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                    +     K    L  L   V+ DGR+  T     AS TGR S      QN+P
Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIP 630

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
            +  +                           +RS  +   G   L+ AD + IE RV+A
Sbjct: 631 VRTEA------------------------GRKIRSGFVVGEGYETLLTADYSQIEMRVMA 666

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            ++ +   I+A+  GED++    +K FN PID V+ E R   K M   L Y     G ++
Sbjct: 667 HLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQ 726

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485
                A      ++ + +       +      E+                      +   
Sbjct: 727 QLSIPAGEAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVA 786

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534
           ++     A+   + GTA +++K A             K + +LQ+  +L    A    E
Sbjct: 787 RENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELE 845



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%)

Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKV 447
           +  I+  A    I+ T      +  +  +T  +  +   R     K+         G + 
Sbjct: 593 EGLIREVAPDGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-GFVVGEGYET 651

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             T A +  ++++  +   +     E + + E  H ++            + G   EL +
Sbjct: 652 LLT-ADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYV----GSKVFNVPIDGVTPELRR 706

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +  +A   G++             +  G    A+++           +R +  ++  +R+
Sbjct: 707 QV-KAMSYGLVYGLSAFGLSQQLSIPAG---EAKQIMESYFERFGGVQRYLREIVEEARK 762

Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------K 619
             Y++   G   YL   TS     R    +   N  +Q  + DI+   M           
Sbjct: 763 AGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAA 822

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               ++L VHDE+V E        V  +  
Sbjct: 823 VKSRVLLQVHDELVVEVAAGELEQVREILE 852


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 137/380 (36%), Gaps = 68/380 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  +  +   +   G  +DL ++ +LQ     + +   E    +    I +     
Sbjct: 484 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 542

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+     ++                  H  +  L     + RL  +    
Sbjct: 543 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 598

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L +AV++DGR+  T     A+ TGR S      QN+P +                
Sbjct: 599 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 640

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R   +  +G  +L+ AD + IE R++A ++G++  I+AF  GED+
Sbjct: 641 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 691

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    ++AF  PID+V+ E R   K M   L Y   A     ++    +  ++ ++    
Sbjct: 692 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSA---YGLSQQLKISTEEANEQ--- 745

Query: 469 TSTFEDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                           M   +  F  V+D L        K  + +   G  +   +L   
Sbjct: 746 ----------------MDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSS 789

Query: 528 FACVVQEGGSISARRVANVP 547
              V +   +  +     VP
Sbjct: 790 NRQVRE--AATDSCACFFVP 807


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSLEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 849 LEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 135/408 (33%), Gaps = 73/408 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           LSD E  L  +   +   G  +D+D +  L+E  A +  +  +D      G   +     
Sbjct: 487 LSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLGSPK 546

Query: 240 ALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF   G+                L  +     H  +  L +     +L  +    
Sbjct: 547 QLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHPFLEALLRHRDAAKLRVT---- 602

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L ++VS DGR+  T      + TGR S      QN+P +                
Sbjct: 603 --VEGLQKSVSDDGRIHTTY-LQTIAATGRLSSTEPNLQNVPIRT--------------- 644

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +  +G   L+ AD + IE RV+A ++G+   I+AF +GED+
Sbjct: 645 ---------EEGRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSGEDL 695

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    ++ F    + V+   R+  K M   L Y     G +K            ++ +  
Sbjct: 696 HRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYGLSAYGLSKQLAISTEEAKGLMEGYFA 755

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
                  + D   AE+                      +   ++     A+   + G+A 
Sbjct: 756 RFGGVRAYLDEVVAEARGTGFTATMFGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAA 815

Query: 504 ELVKKAWRAKHQ------GVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           +++K A     +         ++   + +     V         R+  
Sbjct: 816 DIMKVAMIGVDRTLTEAGARTRILLQVHDELVLEVAADEQADVERIVR 863



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 26/245 (10%)

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           N PI   ++E R I ++  +  GY        +      ++++  +     +   E +  
Sbjct: 639 NVPIR--TEEGRRIRELFVVGDGYDALMSADYS-----QIEMRVMAHLSGDSGLIEAFRS 691

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGG 536
            E  H ++  Q         + G A E V  A R+K + +   L   L+           
Sbjct: 692 GEDLHRFVGSQ---------VFGVAPEDVTAAMRSKVKAMSYGLAYGLSAYGLSKQLAIS 742

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGG 595
           +  A+ +           +  +  V+  +R   + + + G   YL   TS   + R    
Sbjct: 743 TEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMFGRRRYLPDLTSDNRQRREMAE 802

Query: 596 KLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           ++  N  +Q  + DI+   M    +  T+ G    I+L VHDE+V E        V  + 
Sbjct: 803 RMALNAPIQGSAADIMKVAMIGVDRTLTEAGARTRILLQVHDELVLEVAADEQADVERIV 862

Query: 649 -SLMT 652
              M 
Sbjct: 863 REQMG 867


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/555 (15%), Positives = 163/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+      H++        K     +  + W      C
Sbjct: 398 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 449

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 450 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 509

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 510 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 560 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 618

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 619 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 671

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 672 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 707

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 708 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 767

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 768 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 827

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 828 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 887

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 888 LEVAKGEEEKVREIV 902



 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 850 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 902


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSLEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 849 LEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/569 (15%), Positives = 173/569 (30%), Gaps = 125/569 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKF 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L       +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKHYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSCED 484

Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D   + +  + + +E
Sbjct: 485 ADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LELIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKHRRIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTRTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI++ T +K F     +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEALIKAFENNKDIHIETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483
           AK            +  +  +      F                        ++  S++ 
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNY 813

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRA 512
             +      A+   + G+A +++K A   
Sbjct: 814 LERSAAERIAINSAIQGSAADIMKIAMIK 842


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/591 (15%), Positives = 187/591 (31%), Gaps = 102/591 (17%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQ---------SAMP---SDLLQYLRDETVMCVAHNS 73
           E+       ++ D   +   D T              P   S +++ L D ++  + +N 
Sbjct: 339 EKNDYISITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNL 398

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133
               I     L  +I S   I   +L     L +      L      +     E  +   
Sbjct: 399 KELLIFLLNFLRTEITSASCIDDIMLMHYI-LSAGKNELSLNEIIQTYNKSYSEQYSEHK 457

Query: 134 R-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
             + K + D+              +LF               K L    + +  +  + +
Sbjct: 458 VCWLKNTFDNLMS-----------ELFKN-------------KLLHCYYEIDLPICYILR 493

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I + G +I++ L+  L   +  +   L++ I ++       +     L   LF +  + 
Sbjct: 494 NIENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEFNIA-SPKQLGEILFDVLKLP 552

Query: 253 LVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              +S+ T         +  L++      DL+L     +      ++TL   ++++    
Sbjct: 553 HAKVSQKTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRV 612

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T     ++ T R S      QN+P +                              VRS
Sbjct: 613 HTTLLQTSTTTSRLSSHSPNLQNIPIRS------------------------EYGLKVRS 648

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +A  G K++ AD + IE R+L++ A  +     F  GEDI+ +T A+ F    D+V++
Sbjct: 649 AFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTE 708

Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------- 474
           E R   K +   + Y     G AK      +     +  + Q   +   +          
Sbjct: 709 ENRRKAKAINFGIIYGISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVE 768

Query: 475 -------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------KH 514
                             S +L  ++     A+   +  TA ++ K A          K+
Sbjct: 769 HGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSKY 828

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +L   + +     + E    +A  +       +      + + L   
Sbjct: 829 PAI-KLLLQVHDELVFELPEELVDTACNLIKSTMENIPYFSFPLKVELKIG 878


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 175/563 (31%), Gaps = 106/563 (18%)

Query: 33  CAY-----AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           CAY     A  ++   L D    ++ P  L +          A ++L          G  
Sbjct: 349 CAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWAIHAL---------RGRG 392

Query: 88  IPSKRWICTSVLARTNGLPS--SLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPP 144
                    + LA     P   S     L+L +    L     G+  ++           
Sbjct: 393 WTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAE 452

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
              T     Q   +       D E      K L  LSD E  L +    I   G  +D  
Sbjct: 453 AAETAMLSAQ--AVLDLAAALDTELESIESKSL--LSDMELPLTIELAQIEATGIAVDSA 508

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------S 257
            +  LQ   A +         ++ D  I +      L++ LF    +             
Sbjct: 509 HLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTGYTTD 567

Query: 258 EGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
              L+ +     H  +  L       R+  +      ++ L +AV+ DGR+  T     A
Sbjct: 568 AEALQGLFDKTGHPFLEHLLAHRDATRMKVT------VDGLLKAVAEDGRIHTTFNQTVA 621

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG- 373
           + TGR S      QN+P                            A   +R   +   G 
Sbjct: 622 A-TGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 656

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PI++V+ E R   K
Sbjct: 657 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 716

Query: 434 VMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------- 481
            M   L Y     G A   K         +  +         +      ++         
Sbjct: 717 AMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTL 776

Query: 482 -------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518
                        +   ++     A+   + GTA +++K A             K + +L
Sbjct: 777 YGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLKSRMLL 836

Query: 519 QLWKDLTEGFACVVQEGGSISAR 541
           Q+  +L         E  +   +
Sbjct: 837 QVHDELVLEVVASELEEVTALVK 859


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 87/520 (16%), Positives = 159/520 (30%), Gaps = 86/520 (16%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTL-GIDIPSK 91
           A A        +D T         L   L D       H +  E       L G  +  +
Sbjct: 357 AVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALH-AAKEA---SHALAGRGLDLE 412

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                + LA     P   +     LA+ +       ++G +           +   +   
Sbjct: 413 GVTFDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSS-------AGQGALDLEVDG 465

Query: 150 ANHVQAWQLFGEYCKRDVEA---TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           A+  +   +     +  V+              LSD E  L  +   +   G  ID   +
Sbjct: 466 ADEGRRAAVRAAAVRDLVDVLGGEVADRGATTLLSDLELPLQAVLARLERTGIAIDHAYL 525

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK---- 262
             L+     + +    D   +    + +      L+  LF    +      +        
Sbjct: 526 SGLEREFDGQVQGAAADAYAVIGREV-NLGSPKQLQEVLFDQLRMPKTKRIKTGYTTDAN 584

Query: 263 ------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
                 +   H  +  L       RL  +      +  L  +V+ DGR+R T Q   A+ 
Sbjct: 585 ALTDLFARTGHPFLEHLLAHRDAIRLRQT------VEGLLRSVADDGRIRTTFQQTIAA- 637

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P +                          A   +R   +   G   
Sbjct: 638 TGRLSSADPNLQNIPIRT------------------------DAGRQIRRAFVVGPGYAT 673

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++G++  I AF +GED++    ++ F  P D+V+   R+  K M
Sbjct: 674 LLTADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAM 733

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF------------------- 472
              L Y     G ++      S     +  + +       +                   
Sbjct: 734 SYGLAYGLSSYGLSQQLAIEVSEAAALMTDYFERFGGVRDYLTGVVDQARATGYTATVLG 793

Query: 473 --EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                    S +   ++     A+   + G+A +L+K A 
Sbjct: 794 RRRYLPDLTSDNRQRREAAERMALNAPIQGSAADLIKVAM 833


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 142/403 (35%), Gaps = 65/403 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            ++ E  L  +   +  RG       +++L+  + ++  +++  I +L      +     
Sbjct: 435 YAEVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAGEKF-NLNSPK 493

Query: 240 ALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
            L   LF   G+  V  +       ++++ + +         IL+    S      +  L
Sbjct: 494 QLSKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSFVKAL 553

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + +   GR+ G     G + TGR S      QNLP                     ++D
Sbjct: 554 LKRIDETGRVHGNFIQTG-TATGRLSSAEPNLQNLP---------------------VSD 591

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
           PL L    VR  + A  G  LV AD + +E R+LA ++ +   I+AF  GEDI+  T   
Sbjct: 592 PLSL---RVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTETAKH 648

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+T   +++  +R + K +   + Y       A+            ++++ Q       
Sbjct: 649 LFHT--RQITDRERRVAKTVNFGIIYGMSPHGLAERLSIPLQEAKDYIERYFQKFPKVRE 706

Query: 472 FEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAW 510
           F +    E++     +                          AV   + GTA +++K A 
Sbjct: 707 FIEETVREAYKKGFVETAFGRRRPLPELKEKSFHKRSFGERAAVNTVIQGTAADIMKMAM 766

Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545
                         +LQ+  +L        +E  +   ++V  
Sbjct: 767 VNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEVAAKVKQVME 809



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 590 ERTYGGKLTEN-IVQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSV 644
           +R++G +   N ++Q  + DI+   M N      K    I+L VHDE+V E P+     V
Sbjct: 741 KRSFGERAAVNTVIQGTAADIMKMAMVNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEV 800

Query: 645 -GTLCSLM 651
              +  +M
Sbjct: 801 AAKVKQVM 808


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/597 (17%), Positives = 185/597 (30%), Gaps = 77/597 (12%)

Query: 16  LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNS 73
           L  VG   AY   A       A  D   +  D T         L   L D       H +
Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKAL 131
               +      G           + LA     P   S     L+L +        +  A 
Sbjct: 415 K---LAMHDLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLR-RELRADNPAQ 470

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                    D       +   ++A  +       D E  R     L  L   E  +  + 
Sbjct: 471 QQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVL 528

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  +D+D + +LQ   A   +   E    +    I +      L+  LF    +
Sbjct: 529 AEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELAM 587

Query: 252 DLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                ++                  H  +  L       RL  +      ++ L  +V+S
Sbjct: 588 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAS 641

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360
           DGR+  T     A+ TGR S      QN+P R E    I    +           P G  
Sbjct: 642 DGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRRIRDAFVVESR-------PPGSG 693

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              V +        +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF+ P
Sbjct: 694 GGAVFT--------ELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVP 745

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474
           ID+V+ + R   K M   L Y     G A   K       + + Q+         +    
Sbjct: 746 IDEVTPDLRRRVKAMSYGLAYGLSAYGLAAQLKISTEEAKVQMDQYFARFGGIRDYLRDV 805

Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                + +S +  +++     A+   + G+A +++K A     Q
Sbjct: 806 VDQARKDGYTSTVFGRRRYLPELDSSNRNVREAAERAALNAPIQGSAADIIKVAMIDVDQ 865

Query: 516 GVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            +       ++   + +     V +G   +  ++              + + +   R
Sbjct: 866 AIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSAYALDVPLEVSVGYGR 922


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/561 (16%), Positives = 180/561 (32%), Gaps = 109/561 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 340 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKV 381

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L       +  N  F+  + K   G D     +  T + A      S
Sbjct: 382 YIEKHYIIQKFNNLFKSKPKIIGQNYKFDYKILKNN-GFDPIPP-YFDTMIAAYLIDTNS 439

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
            +    LA  +  H   K E+       F   S++    Y    A+   + + +F E  K
Sbjct: 440 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFAHISLEMATSYSSEDADITFRLFNVFNEKLK 499

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D      L K +    + E     +   + + G  +D + + +  + + +E + ++ +I
Sbjct: 500 ED-----GLDKLMY---EIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 551

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277
           +K + GI  +      +   LF    + L D  +     I         H +I  L K  
Sbjct: 552 IK-SIGIDFNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIKHR 610

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            + +L S+ +     + L+E ++    RL         + TGR +      QN+P +E  
Sbjct: 611 QIAKLKSTYT-----DNLTELINYKTNRLHTNF-IQTKTATGRITSINPNLQNIPIKEEK 664

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R      NG   + AD + IE  +LA ++ ++
Sbjct: 665 ------------------------GRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 700

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
             IKAF N +DI+  T +K F     +++   R I K +   + Y+      AK      
Sbjct: 701 VLIKAFENNKDIHAETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITK 760

Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491
                 +  +  +      F                        ++  S++   +     
Sbjct: 761 EEAKGFINSYFDSYPKIKEFITNQINFVRNTGYSETISKRRRYIKEINSNNYLERSAAER 820

Query: 492 FAVKDKLIGTACELVKKAWRA 512
            A+   + G+A +++K A   
Sbjct: 821 IAINSIIQGSAADIMKIAMIK 841



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             +I+Q  + DI+   M          K    I+L VHDE++ E+P         +   M
Sbjct: 823 INSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEMLIESPIEEENETKKILKNM 882

Query: 652 TKNPSWAKGLPLKA 665
            +  ++   LPL+A
Sbjct: 883 MET-AYTLSLPLRA 895


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/622 (14%), Positives = 195/622 (31%), Gaps = 121/622 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID ET S   +               L   +   +        E   +P +    +
Sbjct: 341 KYISIDTET-SSLDIYTA-----------RLIGISISFKE------FEGYYIPIEARGKI 382

Query: 62  ----------------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                            +  ++    N  F+  + K      IP   +  T + A     
Sbjct: 383 YIEKHYIIQKFNNFFESNPKII--GQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDT 438

Query: 106 PSSLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEY 162
            S +    LA  +  H   K E+       F   S++    Y    A+   + + +F + 
Sbjct: 439 NSKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAGISLEMATSYSSEDADITFRLFNVFSKK 498

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            K D         +L  + + E     +   + + G  +D + + +  + + +E + ++ 
Sbjct: 499 LKEDS------LDKL--MHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELIET 550

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAK 275
           +I+K + GI  +      +   LF    + L +  +     I         H +I  L K
Sbjct: 551 EIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENLIK 609

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              + +L S+ +     + L E ++    RL         + TGR +      QN+P   
Sbjct: 610 HRQIAKLKSTYT-----DNLIELINYKTNRLHTNF-IQTKTATGRVTSINPNLQNIP--- 660

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R      NG   + AD + IE  +LA ++ 
Sbjct: 661 ---------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQ 699

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
           ++  IKAF N +DI+  T +K F     +++   R I K +   + Y+      AK    
Sbjct: 700 DEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGI 759

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQY 489
                   +  +  +      F   +     +                        +   
Sbjct: 760 TKEEAKGFIDSYFDSYPKIKEFIINQINFVRNTGYSETILKRRRYIKEINSNNYLERSAA 819

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              ++   + G+A +++K A        ++++ +  +      +    +    +   P  
Sbjct: 820 ERISINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIK 871

Query: 550 VMRRHKRDVHIVLPSSRRLVYS 571
                K+ + I++ ++  L   
Sbjct: 872 EENEVKKILKIMMETAYTLTPP 893


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 66/403 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  +  L   +   G   D D + ++ +  A   ++  ++          +     
Sbjct: 509 LRDVELPISALLARMEKAGIAADRDWLDRMDQRFAGAVQQAVKEAHDAVGHEF-NLGSPK 567

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+   F   G+      +    +            D  L  +        +L      L
Sbjct: 568 QLQEVFFGELGLPKTKKIKTGYTTDADALAWLATQTDHELPVIMLRHREQARLRSTVEGL 627

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            +A++  GR+  T     A+ TGR S      QN+                         
Sbjct: 628 IKAIAPGGRIHTTFNQTVAA-TGRLSSTDPNLQNV------------------------H 662

Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 663 VRTEEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVAS 722

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F     +V  E R   K M   L Y     G ++            +  F +      
Sbjct: 723 QVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMDTFFERFGGVR 782

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +      E+                      +   ++     A+   + GTA ++VK A
Sbjct: 783 DYLQRVVDEARATGYTETMLGRRRYLPDLNSDNRQRREMAERMALNAPIQGTAADIVKIA 842

Query: 510 W----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                      +   + +LQ+  ++    A   +E      RR
Sbjct: 843 MLRVDEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRR 885



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 27/274 (9%)

Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAI-GKVMELALGYQGGAKVF 448
           +  IKA A G  I+ T      A  +  +T  +  +   R   G+ +        G +  
Sbjct: 625 EGLIKAIAPGGRIHTTFNQTVAATGRLSSTDPNLQNVHVRTEEGRAIRRGFVVGEGFESL 684

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G A   V  
Sbjct: 685 LT-ADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQ---------VFGVAKSEVDP 734

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +          F    Q G +   AR++ +         +  +  V+  +R 
Sbjct: 735 EMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMDTFFERFGGVRDYLQRVVDEARA 794

Query: 568 LVYSDVK-GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620
             Y++   G   YL    S   + R    ++  N  +Q  + DI+   M    +      
Sbjct: 795 TGYTETMLGRRRYLPDLNSDNRQRREMAERMALNAPIQGTAADIVKIAMLRVDEALTKEK 854

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
               ++L VHDEIV E        V  L    M 
Sbjct: 855 LSSRMLLQVHDEIVVEVAPGEREQVEALVRREMA 888


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/505 (15%), Positives = 151/505 (29%), Gaps = 73/505 (14%)

Query: 68  CVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
            V HN+        +               + LA     P     A   L+      +++
Sbjct: 400 KVVHNAK----GLMRVFPEHGWSLAGVAMDTALAAYLVKPGRRSFALDVLSMEYLHRELQ 455

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
              A   +   GS D+   +   A       L   +  R  E           L + E  
Sbjct: 456 P-AAQDGQLAFGSDDTAEAEALMAQARAVLDLGDAFTGRLAEVGAAEL-----LHEMELP 509

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
              L   +   G   D D +  +++  A   ++  ++          +      L+   F
Sbjct: 510 TSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPKQLQEVFF 568

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSD 302
               +     ++    +            D  L  +        KL      L + + +D
Sbjct: 569 GELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHREQAKLRVTVEGLVKTIGAD 628

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +     A+ TGR S      QN+P +                             
Sbjct: 629 GRVHTSFSQIVAA-TGRLSSTDPNLQNVPVRT------------------------DEGR 663

Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  ++ F    
Sbjct: 664 AIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVER 723

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
            +V  E R   K M   L Y     G ++            ++ F +       +     
Sbjct: 724 GEVDPEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPGEARGLMETFFERFGGVRDYLQRVV 783

Query: 478 AESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            E+                      +   ++     A+   + GTA ++VK A     + 
Sbjct: 784 EEARATGYTQTVLGRRRYLPDLNSDNRMRREAAERMALNAPIQGTAADIVKVAMLRVDKA 843

Query: 517 VL------QLWKDLTEGFACVVQEG 535
           +       ++   + +     +  G
Sbjct: 844 ITEAGLKSRMLLQVHDEIVLEIAPG 868


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 175/563 (31%), Gaps = 106/563 (18%)

Query: 33  CAY-----AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           CAY     A  ++   L D    ++ P  L +          A ++L          G  
Sbjct: 377 CAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWAIHAL---------RGRG 420

Query: 88  IPSKRWICTSVLARTNGLPS--SLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPP 144
                    + LA     P   S     L+L +    L     G+  ++           
Sbjct: 421 WTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAE 480

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
              T     Q   +       D E      K L  LSD E  L +    I   G  +D  
Sbjct: 481 AAETAMLSAQ--AVLDLAAALDTELESIESKSL--LSDMELPLTIELAQIEATGIAVDSA 536

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------S 257
            +  LQ   A +         ++ D  I +      L++ LF    +             
Sbjct: 537 HLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTGYTTD 595

Query: 258 EGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
              L+ +     H  +  L       R+  +      ++ L +AV+ DGR+  T     A
Sbjct: 596 AEALQGLFDKTGHPFLEHLLAHRDATRMKVT------VDGLLKAVAEDGRIHTTFNQTVA 649

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG- 373
           + TGR S      QN+P                            A   +R   +   G 
Sbjct: 650 A-TGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 684

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PI++V+ E R   K
Sbjct: 685 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 744

Query: 434 VMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------- 481
            M   L Y     G A   K         +  +         +      ++         
Sbjct: 745 AMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTL 804

Query: 482 -------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518
                        +   ++     A+   + GTA +++K A             K + +L
Sbjct: 805 YGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALAEAGLKSRMLL 864

Query: 519 QLWKDLTEGFACVVQEGGSISAR 541
           Q+  +L         E  +   +
Sbjct: 865 QVHDELVLEVVASELEEVTALVK 887


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 134/402 (33%), Gaps = 70/402 (17%)

Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +    +L +RL            ++ L  +   +   G  +++  + +L +   Q    L
Sbjct: 427 IAIHEKLKQRLFKEKLFTIYERFDKPLMKVIFNMEKNGILLNIHKLQELSDKFQQLIAVL 486

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQL-AK 275
           + DI  L       +     L   LF   G++     +     T   +L    I  +   
Sbjct: 487 ENDIYNLAGEKFNIA-SPKQLSDVLFNKMGLNKKKKLKSGSYSTNSVVLEELEIEGVEIA 545

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             IL+    S       + L + V   DGR+         + TGR S      QN+P + 
Sbjct: 546 SKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTNFS-TTVTATGRLSSSSPNLQNIPIRS 604

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
           +                          + +R   IA  G K++ AD + IE R+LA +A 
Sbjct: 605 K------------------------EGNLIRQTFIAPKGYKIISADYSQIELRLLAHVAN 640

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVFK 449
                +AFANG+DI+  T  + F    D +V ++ R   K +   + Y     G AK   
Sbjct: 641 VTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRRKAKSINFGIMYGISQFGLAKRLG 700

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQ 488
                    +  +         + +   + +                        +++  
Sbjct: 701 ITIEEAAEYINYYFSCYPEIKVYMEKVVSTARQHGYVETLFGRRCFVKDINNTIPYLRQF 760

Query: 489 YPEFAVKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524
               A+   L GTA +++K A           + +LQ+  +L
Sbjct: 761 AERAAINAPLQGTAADIIKCAMIQLFDQLKAGKIILQVHDEL 802



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           Q  + DI+   M           I+L VHDE++ E  +     V     LM
Sbjct: 771 QGTAADIIKCAMIQLFDQLKAGKIILQVHDELLVEVENEK---VQETAKLM 818


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +  + DV   +EL   L    + E  L  +   +   G +ID          + ++   L
Sbjct: 477 DILEEDV-KEKELEAVLW---ETELPLIPVLADMERIGIKIDRKYFEAYSLELTEKLALL 532

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAK 275
           ++ I +       +      L   LFL   +     ++    T   +L H +    Q+A 
Sbjct: 533 EKAIWEEAGEEF-NLNSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIAS 591

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +L+  R   +      ++ + +      R+       G + TGR S      QN+P    
Sbjct: 592 NLLEYR-KLAKLKNTYVDPIPKMTGEGDRIHTCYHQIG-TVTGRLSSSDPNLQNIP---- 645

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G KL+  D + +E RVLA ++ +
Sbjct: 646 --------------------VKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLSKD 685

Query: 396 DWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
           +  +KA+   +D++  T  + F     ++VS+EQR + K++  ++ Y     G AK    
Sbjct: 686 ENLLKAYQEKQDLHSVTAKRIFELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGI 745

Query: 451 MASHCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQY 489
                G  ++++       + FE      AE H                   +  ++ Q 
Sbjct: 746 SVKDAGEYIKRYFAQYPRVAQFERQVITFAEEHGYVETYFGRRRIIDGIHSKNKMVKSQA 805

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQ-----LWKDLTEGFACVVQEGG 536
              AV   + GTA E++KK     +  + Q     L   + +     +QEG 
Sbjct: 806 ERMAVNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHDELIFEIQEGK 857



 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 598 TENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
              +VQ  + +IL + M         K    ++L VHDE++ E  +         L   M
Sbjct: 810 VNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHDELIFEIQEGKLQEYEENLIRFM 869

Query: 652 TKNP 655
            +  
Sbjct: 870 RETI 873


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 100/612 (16%), Positives = 199/612 (32%), Gaps = 107/612 (17%)

Query: 4   LFIDIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           +  D ET S    + K+  +++    + +     A+++     +           S +  
Sbjct: 315 ISFDTETTSTDAKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQ-ISMNSAKWAISQIY- 372

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
                    +  N  ++  +     GI+ P K +  T +LA  +   SS+    LA    
Sbjct: 373 -----KGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMDNLAKKLY 426

Query: 120 EHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            + T   E   K            +  Y    A     +  +  +  +  E+   + K  
Sbjct: 427 NYETIKFESVVKKGEDFSSVDLQSASKYASEDAWITLKF--YKTFTNKLEESMLNIAK-- 482

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
               + E    L    +   G R++L+ +  L        + L  +I +L +    +   
Sbjct: 483 ----NVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIYELCEQRF-NINS 537

Query: 238 TYALRMYLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
           +  L   LF    +     ++         L  +L  H +I ++ +   L +L S+    
Sbjct: 538 SKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYRELYKLQSTYC-- 595

Query: 290 LKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                L        + R+       G + TGR S      QN+P +              
Sbjct: 596 ---EPLLNLAIKDENHRVYTNFIQTG-TATGRLSSKNPNLQNIPAR-------------- 637

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G  +  +R+     +G  L+  D + IE R+LA  + +   I+AF NG+D
Sbjct: 638 ----------GNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALIEAFKNGDD 687

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFS 463
           I+  T    F     + + + RAI K +   L Y  G+                 + ++ 
Sbjct: 688 IHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSNELSIDKKSAKEYIDRYF 743

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTAC 503
           +   +   F D  +  + +    +                     +   AV  K  G+A 
Sbjct: 744 KAFSTIKDFLDSIKNRAKNDGFVETLIGRKRYFDFGGATPMQLAMFEREAVNTKFQGSAA 803

Query: 504 ELVKKAWRA---------------KHQGVLQLWKDLTEGFACVVQE-GGSISARRVANVP 547
           +++K A                    + + ++  ++   FA  VQE   ++ A  V  V 
Sbjct: 804 DIIKIAMIKVKDLLNDDAKMLLQIHDELIFEVRDEIAPSFAKNVQELMQTVVALNVPLVA 863

Query: 548 RLVMRRHKRDVH 559
              M ++  D+ 
Sbjct: 864 NWGMAKNWGDLK 875



 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDE 631
           G   Y +   +  M+   +  +      Q  + DI+   M        +   ++L +HDE
Sbjct: 771 GRKRYFDFGGATPMQLAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDE 830

Query: 632 IVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665
           ++ E  D    S    +  LM      A  +PL A
Sbjct: 831 LIFEVRDEIAPSFAKNVQELMQTVV--ALNVPLVA 863


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 146/398 (36%), Gaps = 64/398 (16%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L+K L+     E  L  +   +  +G  ID+         + +E  K+++ I +     
Sbjct: 505 DLYKILM---KNEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287
             +      L   LF+   +     ++ G    ++   ++         L+L+    +  
Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P +              
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 669 -------------GIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 715

Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           ++  T  + FN    + VS+EQR I K++  ++ Y     G AK  K         ++++
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775

Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +     ++FE                          +S +  ++ Q    AV   + GT
Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835

Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534
           A E++KK         K +  + L   + +     V+E
Sbjct: 836 AAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIFEVEE 873



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
           G   Y++   S+    ++   ++  N ++Q  + ++L + M         K    ++L V
Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQV 863

Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651
           HDE++ E  ++       +   +M
Sbjct: 864 HDELIFEVEESSVEKYSEILADIM 887


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/555 (15%), Positives = 163/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+      H++        K     +  + W      C
Sbjct: 357 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 408

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 409 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 468

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 469 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 518

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 519 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 577

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 578 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 630

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 631 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 666

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 667 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 726

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 727 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 786

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 787 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 846

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 847 LEVAKGEEEKVREIV 861



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 809 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 861


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 109/587 (18%), Positives = 188/587 (32%), Gaps = 94/587 (16%)

Query: 16  LPKVGVWA-YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAH 71
           L  VG +  Y   A     A A  D      D T     P D   L ++L D       H
Sbjct: 339 LAVVGTYTPYDGDATAVAIASADGDG--AYIDTTT--VTPDDEAALAEWLADAARPKALH 394

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGK 129
            +           G           + LA     P   S     L+L +     + E+  
Sbjct: 395 EAK---QAIHALAGRGWELGGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDG 451

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
                       +      +A  ++A  +       DVE  R     L  L+D E  +  
Sbjct: 452 EQQLSLLDED-GAGDAKAAQAQMLRARAVIDLADALDVELERIESAGL--LTDMELPVQR 508

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G  +D D +  LQ   A   ++  +    +    I +      L++ LF   
Sbjct: 509 VLAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVIGKQI-NLGSPKQLQVVLFDEL 567

Query: 250 GIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           G+     ++           TL     H  +  L     + RL  +      ++ L ++V
Sbjct: 568 GMPKTKKTKTGYTTDADALQTLFDKTGHPFLEHLLTHRDVTRLKVT------VDGLLKSV 621

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           ++DGR+  T     A+ TGR S      QN+P +                          
Sbjct: 622 AADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPVRT------------------------E 656

Query: 360 ASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           A   +R   +   G + L+  D + IE R++A ++ ++  I+AF  GED++    A+AF 
Sbjct: 657 AGREIRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFG 716

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            PID+V+ E R   K M   L Y     G A   K         + Q+         +  
Sbjct: 717 VPIDEVTAELRRRVKAMSYGLAYGLSAYGLATQLKISNDEAKEQMDQYFSRFGGVRDYLR 776

Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                    +S     ++     A+   + G+A +++K A    
Sbjct: 777 AVVDQARKDGYTSTVLGRRRYLPDLDSGDRLRREAAERAALNAPIQGSAADIIKVAMITT 836

Query: 514 HQG----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
            +           +LQ+  +L    A   +E      R+       +
Sbjct: 837 DKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRKTMGSAYPL 883



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    K     G    ++L VHDE++ E  +    S+  L  
Sbjct: 821 IQGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVR 874


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/555 (15%), Positives = 176/555 (31%), Gaps = 101/555 (18%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +     +  N  F+  + K      IP   +  T + A      S +    LA  +  
Sbjct: 396 LFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKYLM 453

Query: 121 HL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177
           H   K E+       F   S+                ++   Y   D + T  LF     
Sbjct: 454 HKNIKYEDVIQKNDNFANISL----------------EMATSYSSEDADITFRLFNLFTK 497

Query: 178 --------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                     + + E     +   + + G  +D + + +  + + +E + ++ +I+K + 
Sbjct: 498 KLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK-SI 556

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDLILNRL 282
           GI  +      +   LF    + L +  +     I         H +I  L K   + +L
Sbjct: 557 GIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKL 616

Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            S+ +     + L E ++    RL  +      + TGR +      QN+P          
Sbjct: 617 KSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQNIP---------- 660

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R      NG   + AD + IE  +LA ++ ++  IKA
Sbjct: 661 --------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKA 706

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
           F N +DI+  T +K F     +++   R I K +   + Y+      AK           
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKG 766

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKD 496
            +  +  +      F   +     +                        +      A+  
Sbjct: 767 FINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINS 826

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            + G+A +++K A        ++++ +  +      +    +    +   P       K+
Sbjct: 827 IIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIEEENEVKK 878

Query: 557 DVHIVLPSSRRLVYS 571
            + I++ ++  L   
Sbjct: 879 ILKIMMETAYTLNLP 893


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/555 (15%), Positives = 163/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+      H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R   +   G + L+ AD
Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 849 LEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/569 (15%), Positives = 174/569 (30%), Gaps = 125/569 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
             + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKF 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L       +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKHYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +    LA  +  H   K E+       F   S+                ++   Y   D
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSCED 484

Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  LF               + + E     +   + + G  +D   + +  + + +E
Sbjct: 485 ADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKE 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269
            + ++ +I+K + GI  +      +   LF    + L +  +     I         H +
Sbjct: 545 LELIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           I  L K   + +L S+ +     + L E ++    RL  +      + TGR +      Q
Sbjct: 604 IENLIKHRRIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTRTATGRITSINPNLQ 657

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R      NG   + AD + IE  +
Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444
           LA ++ ++  IKAF N +DI+V T +K F T   +++   R I K +   + Y+      
Sbjct: 694 LAHLSQDEALIKAFENNKDIHVETASKLFKTEEKEITPNLRRIAKSINFGIIYRMSDFRL 753

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483
           AK            +  +  +      F                        ++  S++ 
Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNY 813

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRA 512
             +      A+   + G+A +++K A   
Sbjct: 814 LERSAAERIAINSAIQGSAADIMKIAMIK 842



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             + +Q  + DI+   M          K    I+L VHDE++ E+P      V  +  +M
Sbjct: 824 INSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIM 883

Query: 652 TKNPSWAKGLPLKA 665
            +  ++   LPL+A
Sbjct: 884 MET-AYTLNLPLRA 896


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 134/397 (33%), Gaps = 69/397 (17%)

Query: 169 ATRE--LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             RE  L  RL  +    ER L  +   + + G  +D +++ +L        + L+ +I 
Sbjct: 432 VMREKLLSDRLFTVYYQLERPLVRVLYEMQEVGIEVDTEILKQLSRDFHGSIRSLEREIY 491

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLIL 279
            L      +      L   LF   G+        +     +   +T+LA       D +L
Sbjct: 492 GLAGCKF-NVASARQLGKLLFERMGLSSSTKKMPSGSYSTNAEVLTELAAEGVEIADKVL 550

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                S      ++ L   V +   R+  +     A+ TGR S      QN+P + +   
Sbjct: 551 KWRHFSKLKSTYVDALLRQVETGTERVHTSYSMV-ATATGRISSSNPNLQNIPIRSK--- 606

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   +A  G KLV AD + +E +++A IAG    
Sbjct: 607 ---------------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAF 645

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
             AFA G+DI+  T  + F   +     E R   K +   + Y       AK        
Sbjct: 646 RDAFAEGKDIHQVTAQQIFGDDVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQE 703

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFA 493
               ++Q+ ++      + +  +A +                         ++      A
Sbjct: 704 ATQYVEQYFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYVPGINSAQHAIRGFAERAA 763

Query: 494 VKDKLIGTACELVKKAWRAKHQG------VLQLWKDL 524
           +   + GTA ++VKKA             +LQ+  +L
Sbjct: 764 INAPIQGTAADVVKKAMINLRDKLEVGTIILQVHDEL 800



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 602 VQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTL-CSLM 651
           +Q  + D++ + M N         I+L VHDE++ E P++   +V  L   +M
Sbjct: 768 IQGTAADVVKKAMINLRDKLEVGTIILQVHDELLVEVPESHVDNVAQLMKEVM 820


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 149/495 (30%), Gaps = 93/495 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT---KM 125
           + HN  F+     + LG+D     +  T VLA       SL    L+ +   H     K 
Sbjct: 403 IGHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDNLSQSLLHHEMIHFKD 461

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS---- 181
              K     F   +I+                   +Y   D   T  L++ L        
Sbjct: 462 TVKKGEN--FASVAIEDA----------------CKYAGEDAYITYRLYEVLKEQLLLKG 503

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E    L    +   G  +D  ++   ++ +A E   L E I       +
Sbjct: 504 GQEALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATLTEQIHSACG-TV 562

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF   G+     ++    T + +L           ++L          
Sbjct: 563 FNLNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPMLLQYREYHKLYS 622

Query: 290 LKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
             +  L     +D   R+  +    G + TGR S      QN+P                
Sbjct: 623 TYIEPLIALAQNDPSSRIYTSFVQTG-TATGRLSSKNPNLQNIP---------------- 665

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GKKL+  D + IE R+LA  + +   + AF  G D
Sbjct: 666 --------VKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHD 717

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFS 463
           I++ T    F     + +  +R I K +   L Y  G K                ++++ 
Sbjct: 718 IHMQTAIALFG---AEDASRKRNIAKTVNFGLLYGMGQKKLSDTLGITTKEAKEIIERYF 774

Query: 464 QNVKSTS-TFEDWEQAESHHLWM-------------------QDQYPEFAVKDKLIGTAC 503
           +   S    F    +      ++                   +  Y   +V     G+A 
Sbjct: 775 ETFPSVKGYFNGIVEQAKEIGYVETLLHRRRYFDFGSATPMLKAAYERESVNTVFQGSAS 834

Query: 504 ELVKKAWRAKHQGVL 518
           +L+K +       + 
Sbjct: 835 DLIKLSMNKIDTMIR 849



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597
            A+ +           K   + ++  ++ + Y +       Y +  ++  M +  Y  + 
Sbjct: 765 EAKEIIERYFETFPSVKGYFNGIVEQAKEIGYVETLLHRRRYFDFGSATPMLKAAYERES 824

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-----VGT 646
              + Q  + D++   M               ++L +HDE++ E             V  
Sbjct: 825 VNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDADVAEEYAVRFVDA 884

Query: 647 LCSLM 651
           +  ++
Sbjct: 885 MERIL 889


>gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
 gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
          Length = 885

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/498 (15%), Positives = 157/498 (31%), Gaps = 83/498 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L ++L ++       +     +  K+   + I ++      +L         L N   
Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR---LGIEAESIDFDLLLVSYL-----LNNTDN 416

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           + +  +   K          F   S D       +       + F E+ +  V A   L 
Sbjct: 417 SNDLGQLCQKQG-------YFGVKSDDEVYGKGAKKEICAD-ETFFEHLRSKVFAIAFLK 468

Query: 175 KRLI----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++L+             + ER L ++   +   G + D + +  +     ++   L+  I
Sbjct: 469 QKLMQKLKDNSQDHLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLI 528

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +       +      L   LF   G+     ++    T   +L       +  +++L R
Sbjct: 529 YQEAGETF-NINSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRGNDIVDNVLLYR 587

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +   +   ++ L + +  D ++         + TGR S      QN+P          
Sbjct: 588 QFAKLKST-YIDGLIKVMDQDEKVHTR-YTQTLTTTGRLSSVEPNLQNIP---------- 635

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   I S+ G ++  +D + IE RVLA I+ ++   K
Sbjct: 636 --------------VRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDENMQK 681

Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           AF +  DI+  T  K F     D+V+   R   K +   + Y     G A+         
Sbjct: 682 AFKDDFDIHANTAMKIFGLSSPDEVTPNMRRQAKAVNFGIVYGISDFGLAQSIGCRRDQA 741

Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494
              ++ + ++      +                        E   S +   +      A+
Sbjct: 742 KTFMETYFESFPGVKRYMTEIVELARNQGYVETLFKRRRYLEGIRSKNFNQRSFAERTAM 801

Query: 495 KDKLIGTACELVKKAWRA 512
              + G+A +++K A   
Sbjct: 802 NTPIQGSAADIIKVAMIK 819



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598
           A+             KR +  ++  +R   Y +       YL    S+   +R++  +  
Sbjct: 741 AKTFMETYFESFPGVKRYMTEIVELARNQGYVETLFKRRRYLEGIRSKNFNQRSFAERTA 800

Query: 599 ENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
            N  +Q  + DI+   M          +    ++L VHDE++ E P+     +  L 
Sbjct: 801 MNTPIQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEIPVLEKLV 857


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/524 (16%), Positives = 168/524 (32%), Gaps = 81/524 (15%)

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEE-GKALIA 133
           I  K  L      + W  TS    T  +  +   L+   + LNFS+ +        + I 
Sbjct: 345 ISLKDYLKDTSYPQAWNETSYRRTTYDIKRNAHLLEKNGIYLNFSDDVMIYTSLVDSTIT 404

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCK---------RDVEATRELFKRLIPLS--- 181
            F K    S   +  R   V   +   E  +           ++  +E + +L  ++   
Sbjct: 405 SFKKLKEKSEWQETIRYEEVYKKEELIEKNQAAYCASVLRNLIQVDQEYYPKLKEMNLIS 464

Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              D E  L  + + +  +G R +  ++  + E    + ++L++ I K+      +    
Sbjct: 465 LYRDVELPLVTILKDMEQKGIRCEEKVLDHIAEGTLAKIQELEKAIYKVVGHEF-NLNSP 523

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
             L + L+    I            +     +  +  D++  R   S         L + 
Sbjct: 524 KQLAVVLYDELQILKGKKRSTAAGELEKIQGLYTVVDDILAYR-KYSKLYSTYAEGLKKY 582

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           + +DG++        A++TGR S      QN+                            
Sbjct: 583 IQADGKIHTVYN-QAATQTGRLSSSEPNLQNIS------------------------VRD 617

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G  LV +D   +E R+LA +A     IKAF N  DI+  T    F+
Sbjct: 618 EEGREIRKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTAMDLFD 677

Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE- 473
             +++V+  QR   K +   + Y     G A             ++++ +      T+  
Sbjct: 678 CSLEEVTPLQRRQAKTVNFGIVYGISDFGLASQLGVSRFEARDFIEKYYRVYPEIKTYME 737

Query: 474 --------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512
                               +  +    +  +Q      A+   + GTA +L+K A    
Sbjct: 738 SVIHFCKENGYVETLCHRRREIPEIHDKNKQIQAFGERAAMNAPIQGTAADLIKLAMIQV 797

Query: 513 ---------KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                    K + +LQ+  +L         E      ++     
Sbjct: 798 REMIDENHLKAKMILQVHDELIFNVPLEEVEIMKTIIQKGMETA 841


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 159/477 (33%), Gaps = 49/477 (10%)

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
           + R+  G   S P +  +A H   W+        + +    L++++      E+ L  + 
Sbjct: 401 VRRYGAGDWGSDPGERAQAAHT-LWETLQSRIGENPKIEW-LYQQI------EKPLSAVL 452

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I  RG  ++ + +L+L E +A+E   L+ +I +L      +      L + L+    +
Sbjct: 453 ARIEARGISLNAEYLLQLSEELAKEISYLEAEIHRLAGRSF-NVNSRDQLEVVLYDELKL 511

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305
                   T K   + S + +L     +     +   + KL     + L + +    GRL
Sbjct: 512 SAPGRKTQTGKRSTAASALEELLGQHPIIERILTYRELTKLKSTYLDPLPKLIHPKTGRL 571

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                  G + TGR S      QN+P +                              +R
Sbjct: 572 HTRFNQTG-TATGRLSSVDPNLQNIPVRT------------------------EIGRRIR 606

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               A+ G +LVVAD + IE RVLA ++G++  I  F  G DI+  T A  F    DKV 
Sbjct: 607 KAFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVG 666

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
            EQR   K +        G           G  +Q     ++      D     +  +  
Sbjct: 667 AEQRRAAKCLVEGTKVATGRGWLPIEQVRVGDCVQT-DGKMRRVVGLLDNGIQPTIRIST 725

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           Q  +         I    +     WR      A  Q VL+              E  +I+
Sbjct: 726 QRGFELRGTPHHRIRVVAKDGAVVWRQLQHLQAGDQVVLRRHGAFGYCNDLPPLEPVAIT 785

Query: 540 ARRVANVPRLVMRRHKRDV--HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
             +    P+ + ++    +   +   ++ R      +     +      L      G
Sbjct: 786 RHKPLPWPQHLDQKMALWLGYMVAEGTAIRAKQHRERYGVVLMGLGRRDLDVLDEVG 842



 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 9/133 (6%)

Query: 538  ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGK 596
              A            + +  +  VL  +R+  Y +   G   ++    S++   R    +
Sbjct: 1129 AEAEGFIERYFASYPKVREWIERVLADARQTGYVETMFGRRRFVADLGSRVRSVREAAER 1188

Query: 597  LTENI-VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650
            +  N+ VQ  + D++   M             +VL VHDE++ E P     +V  +   +
Sbjct: 1189 MAFNMPVQGTAADLMKLAMVKLQPELEPLEAHLVLQVHDELLVEAPADKAEAVAGVVREV 1248

Query: 651  MTKNPSWAKGLPL 663
            M +  +WA  +PL
Sbjct: 1249 MQQ--AWALAVPL 1259



 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 33/143 (23%)

Query: 434  VMELALGYQGGAKVFK----TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------- 482
             +   + Y   A           +     ++++  +      + +   A++         
Sbjct: 1106 TINFGVLYGMSAHRLSNELSISYAEAEGFIERYFASYPKVREWIERVLADARQTGYVETM 1165

Query: 483  --------------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQL 520
                            +++     A    + GTA +L+K A               VLQ+
Sbjct: 1166 FGRRRFVADLGSRVRSVREAAERMAFNMPVQGTAADLMKLAMVKLQPELEPLEAHLVLQV 1225

Query: 521  WKDLTEGFACVVQEGGSISARRV 543
              +L         E  +   R V
Sbjct: 1226 HDELLVEAPADKAEAVAGVVREV 1248


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 170/498 (34%), Gaps = 81/498 (16%)

Query: 95  CTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRA 150
             + LA     P    +      A     H+ +  E        F +        D    
Sbjct: 455 FDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDEPEESVQQKDDQLP 514

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H            R++  + +  ++   L   E  +  +   +   G ++D++ ++ ++
Sbjct: 515 RHTAI----VGLLARNLSNSLDQREQFALLESVEIPVSRVLYGMEHAGAQVDMNRLMNMR 570

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLK 262
           E +A +     E   +     + + +    L+  LF   G+     ++          L+
Sbjct: 571 EQLASDANHAQETAWQYAGKRV-NLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAALQ 629

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGR 319
           ++   S     A   +   L       LK  + TL +A + SDGR+  T +   A+ TGR
Sbjct: 630 TLRDRSYDNDSACQFLDALLLHREKNKLKQIVQTLIDATNGSDGRIHTTFEQTVAA-TGR 688

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVV 378
            S      QN+P +                          A   +RS  +   G + L+ 
Sbjct: 689 LSSVDPNLQNIPNR------------------------DPAGREIRSAFVPGEGFESLLS 724

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           +D + +E R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   
Sbjct: 725 SDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITSDQRSHVKAMSYG 784

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474
           L Y     G ++             QQ+         + +                    
Sbjct: 785 LAYGLSTYGLSQQLGIKPGEAESLKQQYFATFGKVHEYLESLVSTAREKGYTETIYGRRR 844

Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKD 523
            +   +S +  ++D     A+   + G+A +++K A                 +LQ+  +
Sbjct: 845 YFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRADDALHESGLASRIILQIHDE 904

Query: 524 LTEGFACVVQEGGSISAR 541
           L    A    E  +   +
Sbjct: 905 LVVEIAPGEAEQATALVK 922



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654
           +Q  + DI+   M  A    +       I+L +HDE+V E  P     +   +   M   
Sbjct: 869 IQGSAADIMKIAMIRADDALHESGLASRIILQIHDELVVEIAPGEAEQATALVKDAMEHA 928

Query: 655 PSWAKGLPLK 664
              A  +PL 
Sbjct: 929 VDMA--VPLD 936


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 170/498 (34%), Gaps = 81/498 (16%)

Query: 95  CTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRA 150
             + LA     P    +      A     H+ +  EG       F +    +   D    
Sbjct: 437 FDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQRNDNQLP 496

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H            R +  + +  ++   L   E  +  +   +   G ++D++ ++ ++
Sbjct: 497 RHTAI----VGLLARKLADSLDQREQFSLLESVEIPVSRVLYGMEHAGAQVDMNRLMSMR 552

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLK 262
           E +A +     E   +     + + +    L+  LF   G+     ++          L+
Sbjct: 553 EQLAADANYAQETAWQYAGERV-NLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAALQ 611

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGR 319
            +   S     A   +   L       LK  + TL +A + SDGR+  T +   A+ TGR
Sbjct: 612 VLRDRSCGNDRACQFLDALLLHREKNKLKQIVQTLIDATNRSDGRIHTTFEQTVAA-TGR 670

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVV 378
            S      QN+P +                          A   +RS  +   G + L+ 
Sbjct: 671 LSSVDPNLQNIPNR------------------------DPAGREIRSAFVPGEGFESLLS 706

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           +D + +E R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   
Sbjct: 707 SDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYG 766

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474
           L Y     G ++             +Q+         + +                    
Sbjct: 767 LAYGLSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKGYTETIYGRRR 826

Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKD 523
            +   +S +  ++D     A+   + G+A +++K A                 +LQ+  +
Sbjct: 827 YFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRADDALREAGLASRIILQIHDE 886

Query: 524 LTEGFACVVQEGGSISAR 541
           L    A    E  +   +
Sbjct: 887 LVVEVAPGEAERVTALVK 904



 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 851 IQGSAADIMKIAMIRADDALREAGLASRIILQIHDELVVEVAPGEAERVTALVK 904


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 79/479 (16%), Positives = 162/479 (33%), Gaps = 65/479 (13%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  F+  L  +TLG++   K    + +L+      + +      L +  H     + 
Sbjct: 409 IGHNLKFDFSLIYRTLGLEHIGK-IYDSMILSWLYDSIAPVGLDKQMLKWFNHTMISFDS 467

Query: 129 KALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERD 186
                  F + +I +     T+     A   F  Y + + E  +  +  ++ L+   E  
Sbjct: 468 VVPKGENFSQVNIIT----ATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLEYP 523

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
              +   +   G R+D+ L+  L++  ++   +L + I  L      +      L   LF
Sbjct: 524 FIKVLMDMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLCGETF-NLNSPQQLAHILF 582

Query: 247 LITGIDLVDMSEGTL---KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA--VSS 301
              G+      +G L   +  L     +    DLIL+   S+      +  L      + 
Sbjct: 583 ENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYRESNKLKSTYIEPLLRLGRTNE 642

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             R+  +    G + TGR S      QN+P                              
Sbjct: 643 THRIHTSFLQNG-TATGRLSSKSPNLQNIP------------------------VRREEG 677

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   I+  G  L+  D + IE R+LA    +   +++F   +DI+  T A+ F    
Sbjct: 678 RKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLFG--- 734

Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF----- 472
           ++ + ++R I K +   L Y  G    ++  +         ++ +     +   F     
Sbjct: 735 EQEAMQKRFIAKSINFGLIYGMGSKKLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQE 794

Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                            +   +    +M+  +    +     G+A +L+K +    H+ 
Sbjct: 795 EFLLENGYSQTLLGHRRYFDFKRATDFMKANFLREGINSIFQGSAADLIKLSMCEIHKR 853



 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 598 TENIVQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
             +I Q  + D++   M    K   K+   ++L VHDE++ E P     +    +  +M
Sbjct: 831 INSIFQGSAADLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAENYAKEVADIM 889


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 148/434 (34%), Gaps = 76/434 (17%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
               R +    +   +L    D E  L  +   +   G  +   L+ +L +  +      
Sbjct: 517 HELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMA 576

Query: 221 DEDIVKLTDGIIR----SSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSN 269
           +E    L  G +     +      L+  LF   G+      +        ++  +L+  +
Sbjct: 577 EEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVS 636

Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                   ++   A   +  LK  +  L +A  +DGR+  T Q   A+ TGR S      
Sbjct: 637 PESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVADGRVHTTFQ-QNAASTGRLSSTAPNL 695

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-------NGKKLVVAD 380
           QN+P +                              +R   I +         + L+ AD
Sbjct: 696 QNIPIRT------------------------DEGRRIRGAFIVAPKILDGVEYEGLLTAD 731

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++  +A ++  I+A+A+GED++    ++ F    ++V+ + RA  K M   L 
Sbjct: 732 YSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLA 791

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481
           Y     G AK     +   G     + +       F      ++H               
Sbjct: 792 YGLSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSL 851

Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFA 529
                 +   ++     A+   + GTA +++K A    H+ +       ++   + +   
Sbjct: 852 PDLDSPNRTRREAAERAALNAPIQGTAADIIKIAMINIHRRLQEENLKTRMLLQVHDEII 911

Query: 530 CVVQEGGSISARRV 543
             V  G   +A+R+
Sbjct: 912 LEVAAGEREAAQRI 925



 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
           +Q  + DI+   M N  +          ++L VHDEI+ E       +   +    M++ 
Sbjct: 874 IQGTAADIIKIAMINIHRRLQEENLKTRMLLQVHDEIILEVAAGEREAAQRILVEEMSEA 933

Query: 655 PS 656
             
Sbjct: 934 IE 935


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 151/412 (36%), Gaps = 71/412 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQ 237
           ++  +  L  +   +   G  +D++ +  L+E + +    L+E I +       ++S +Q
Sbjct: 435 VTRVDHPLSAVLVDMEREGIGLDVEGLRGLRERLERALGALEEGIAREAGAQVNLQSPKQ 494

Query: 238 TYALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDL-ILNRLASSGSAILKL--- 292
              L   LF   G+  V  ++  L   +     +++L + L  +  +      I KL   
Sbjct: 495 VAWL---LFERLGLPPVKRTKTGLSTDVGVLEELSRLPEPLGRVPSMILEHREISKLITA 551

Query: 293 --NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             N   E   S G +R T    G + TGR S      QNLP+                  
Sbjct: 552 FVNPFLEQ-GSSGVIRSTFDQTG-TGTGRLSSRDPNVQNLPQ------------------ 591

Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                  G  +   R C++    G   V AD + IE RVLA ++GE+  I+AF  G D++
Sbjct: 592 ------FGHWAVEFRRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVH 645

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQN 465
             T +  +      VS EQR   KV+   L Y  G    A+      S     ++++   
Sbjct: 646 ARTASWIYGVDPQAVSPEQRRFAKVVNFGLLYGMGAHGLAQRMGVSRSEAAEVMERYFSA 705

Query: 466 VKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACE 504
           +     F      ++                                 A+   + G+A +
Sbjct: 706 LPGVREFTRRMVEQAKARGYAATLMGRVRPLSEVSTVEGRGAGAIDRVAINTPIQGSAAD 765

Query: 505 LVKKAWRAKHQ----GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           + +KA    H+    G  ++   + +   C V EG +    RVA + R VM 
Sbjct: 766 IARKAMVELHRALAGGDCRMVLQVHDSIVCSVPEGMAS---RVAELMREVME 814


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 96/589 (16%), Positives = 177/589 (30%), Gaps = 95/589 (16%)

Query: 18  KVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAH- 71
           + G+    E       +T  A A  D      D           L   L D     VAH 
Sbjct: 351 RTGLHVTGEWSRGSGEVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHD 410

Query: 72  -----NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
                ++L  R      + +D     ++C       +    ++++    L         +
Sbjct: 411 VKGPSHALLARGWTLAGVVLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGAD 470

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
                                 RA       L        + A  E       L + E  
Sbjct: 471 ADVDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRLLHEVELP 530

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +       G  +D +L+  L+   A+   +      ++    I +      L+  LF
Sbjct: 531 LVAVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEI-NLGSPKQLQTVLF 589

Query: 247 LITGIDLVDMSEGTLKS----------ILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               +     ++    +             H  +  L +    +RL  +      +  L 
Sbjct: 590 EQLDMPKTKRTKTGYTTDADALAALFVKTEHPFLAHLLEHRDASRLRQT------VEGLR 643

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           ++V+ DGR+  T Q   A+ TGR S      QN+P +                       
Sbjct: 644 KSVADDGRIHTTYQQMIAA-TGRLSSTDPNLQNIPIRT---------------------- 680

Query: 357 LGLASDCVRSCII------ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                  +R   +      A +G + L+ AD + IE R++A ++G++  I AF +GED++
Sbjct: 681 --EEGRRIREAFVVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLH 738

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               ++ F      V+ E RA  K M   L Y     G +   K         + ++ Q 
Sbjct: 739 RFVGSRVFGVAPVDVTPEMRAKIKAMSYGLAYGLSAFGLSNQLKISTEEAKDLMDEYFQR 798

Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504
                 +      E+                      +   ++     A+   + G+A +
Sbjct: 799 FGGVRDYLHGVVEEARRTGWTETIMGRRRYLPDLASDNRQRREMAERMALNAPIQGSAAD 858

Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543
           ++K A      G          +LQ+  +L    A   +E      R  
Sbjct: 859 IIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEELVRAT 907


>gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
 gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
          Length = 883

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/537 (13%), Positives = 162/537 (30%), Gaps = 88/537 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107
           + L + L D+ +     +     +  ++ LGI +         +LA          G   
Sbjct: 362 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 418

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L N+              +GK    +          +  T+ + +   +          
Sbjct: 419 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 470

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L
Sbjct: 471 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 528

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283
                 +      L + LF    +     ++     ++  +      + +  D++  R  
Sbjct: 529 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 587

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S   +   +N L + + +DG++         + TGR S      QN+P            
Sbjct: 588 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 633

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +       L   D + +E RVLA ++ E   ++AF
Sbjct: 634 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 681

Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
             G DI+  T  K F    +D+V+   R   K +   + Y     G AK           
Sbjct: 682 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 741

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            +  + +       +                            + +  ++      A+  
Sbjct: 742 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 801

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            + G+A +++K A             K + +LQ+  +L         +       ++
Sbjct: 802 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 858


>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of
           Bemisia tabaci]
          Length = 939

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 97/581 (16%), Positives = 169/581 (29%), Gaps = 106/581 (18%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR----DETVMCVA 70
            +   G+  +   A +   A+A+              A     L  L+       V+ V 
Sbjct: 368 DIATTGMDPHL--ADLLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTDVLKVG 425

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA 130
           HN     I+ ++  G+ I    +  T +    +GL        +A +   HLT + E   
Sbjct: 426 HNLKNALIVMQRH-GLSIAPPLF-DTMI---AHGL--------VAADMDHHLTTLSE--- 469

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-------- 182
                   S   PP    + +          Y     +    ++ ++             
Sbjct: 470 --QYLNHRSYLKPPNRAEKESEGI-----KNYAGEGADLVLHIYPKIAQALREHKVATLF 522

Query: 183 --GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              E  L  +   +   G  IDL  +  L   +    K L E I  L      +      
Sbjct: 523 YRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQTTF-NIDSPKQ 581

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           L + LF    +    M     +     + + +L+K   +  L        KL     + L
Sbjct: 582 LGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYRTWQKLRSTYVDAL 641

Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
              +   D RL  T      + TGR S      Q +P +                     
Sbjct: 642 PTLLHPIDQRLHATYHQTVVT-TGRLSATGPNLQQIPIRT-------------------- 680

Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   I    G  L  AD + IE R++A  A +   I AF + +DI+  T 
Sbjct: 681 ----PTGRALRKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQDIHQITA 736

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF-----KTMASHCGLDLQQFSQNVKS 468
            K F T I  V +E R   K+    + Y                      ++ + +    
Sbjct: 737 QKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLSERMEHLSRKEAAELIEAYFEAFPG 794

Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             T+ D                          + +   +      A+   + G+A E++K
Sbjct: 795 IKTYIDDSIAHAEANGYVRTLLGRKRFLPDLYASNPTTRGVARRNAINTPIQGSAAEMIK 854

Query: 508 KA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            A      W  KH+   +L   + +     V        + 
Sbjct: 855 LAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRSEIADIQH 895


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 165/555 (29%), Gaps = 103/555 (18%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+    V H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151
            + LA     P   +   +  +  + +  L + EE        F +              
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +          +   E           L D E  +     ++   G  +D D+   L+ 
Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262
              +   +  E   +     I  S     L+  LF    +     ++             
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR S
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P +                              +R  ++   G + L+ AD
Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGVVVGEGYESLLSAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   L 
Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483
           Y     G +   K         +  +         + +    ++                
Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788

Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529
                     +D     A+   + G+A +L+K A  A  Q         ++   + +   
Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848

Query: 530 CVVQEGGSISARRVA 544
             V +G     R + 
Sbjct: 849 LEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
 gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
          Length = 883

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 73/536 (13%), Positives = 162/536 (30%), Gaps = 88/536 (16%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSS 108
            L + L D+ +     +     +  ++ LGI +         +LA          G    
Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLGV 419

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L N+              +GK    +          +  T+ + +   +           
Sbjct: 420 LANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L 
Sbjct: 471 -ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF    +     ++     ++  +      + +  D++  R  S
Sbjct: 530 GEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQIS 588

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              +   +N L + + +DG++         + TGR S      QN+P             
Sbjct: 589 KIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------- 633

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +       L   D + +E RVLA ++ E   ++AF 
Sbjct: 634 -----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            G DI+  T  K F    +D+V+   R   K +   + Y     G AK            
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           +  + +       +                            + +  ++      A+   
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           + G+A +++K A             K + +LQ+  +L         +   I   ++
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKI 858


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 84/509 (16%), Positives = 169/509 (33%), Gaps = 63/509 (12%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
             D      D + Q A   ++L   LRD     V H                +  +  + 
Sbjct: 414 VRDGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFKAALKALSA---RGLELEGVVD 470

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            + ++     P         L          E    +A+  +  +     D   A  +  
Sbjct: 471 DTSISGYLIQPDRRTYELAEL---AQHHLNIEISTAVAKAGQLELSFDGDDSAAAGELVH 527

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
                    R  EA  +  K    LS  E  +  +   +   G  ID+  + +    +A+
Sbjct: 528 AAAVVHALSRYFEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQRMDEQLADLAK 587

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--TLKSILSHSNITQL 273
                 E         + +      L+  LF    +      +   T  +    + + + 
Sbjct: 588 VIDNAQELAFAAIGHEV-NLGSPKQLQTVLFDELQLPKTKKIKSGYTTDAASLKNLLEKT 646

Query: 274 AKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             + ++  +A   S+ L+  L +L ++V+ DGR+  T     A+ TGR S      QN+P
Sbjct: 647 GHEFLVQLMAHRESSKLRQMLESLKKSVAEDGRIHTTYAQNVAA-TGRISSNNPNLQNIP 705

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390
            +                              VR   + S G + L+ AD + IE R++A
Sbjct: 706 IRS------------------------EEGRRVRGIFVVSEGYECLLSADYSQIEMRIMA 741

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            ++G+   I+A+ +GED++    +  F+ P D+V+   R+  K M   L Y     G +K
Sbjct: 742 HLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSK 801

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWM 485
             +         ++++     +   +      ++                         +
Sbjct: 802 QLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQARIDGFTATIEGRRRYLPDLTSTDRQL 861

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH 514
           ++     A+   + G+A +++K+A    H
Sbjct: 862 RENAERIALNSPIQGSAADIIKRAMLGVH 890



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 504 ELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           + V  A R+K + +   L   LT        E     AR +           +  +  V+
Sbjct: 773 DQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVV 832

Query: 563 PSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN 620
             +R   + + ++G   YL   TS   + R    ++  N  +Q  + DI+   M      
Sbjct: 833 DQARIDGFTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVHAE 892

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
                    ++L VHDE+V E       +V  L    M 
Sbjct: 893 LKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMG 931


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 83/536 (15%), Positives = 178/536 (33%), Gaps = 67/536 (12%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q+L D     + +++    +   +    +I  +      +LA      ++  +    +N 
Sbjct: 357 QFLNDNKYQKLTYHAKSLIVALARD---NIFVQNIEYDMMLAGYVYNSNAKNSLDTYINL 413

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            E    + +       + KG     P D  +  H    +    +  R          +  
Sbjct: 414 FEKKQILTD----EFFYGKGVKKQIPADVIKLGHFIGEKASYIHKLRPKIIELLKTNQQY 469

Query: 179 PL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            L  + E  +      +   G ++D   +      I +  ++L+ +I  +    I +   
Sbjct: 470 DLYHNIELPIAFALARMEINGVKVDQYELTTQTLRIEKIVQELNNEINDIAQKEI-NPNS 528

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              +   LF    +        T +  L       +    IL+           L  + +
Sbjct: 529 PKQISELLFQNFSLP-DRKKGSTAQETLEEIKNNHVIIPKILDYRKYQKLYSTYLKGMEK 587

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            + +DG++    +    + TGR S      QN+                     +I D +
Sbjct: 588 YIFADGKVHTIYK-QTLTNTGRLSSVEPNMQNI---------------------SIRDHI 625

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +   +++S    L+  D + IE R+LA ++ +   I AF N EDI+  T  K F
Sbjct: 626 QKEVRKI--FVVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIF 683

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           N   D+++   R   K +   + Y     G A       +     +  + Q   +   F 
Sbjct: 684 NLSKDEITPNIRRSAKAVNFGIIYGISDFGLATDLNISVAKAKAIINNYYQQFPTIKAFI 743

Query: 474 D--------------------WEQAESHHLWMQDQY-PEFAVKDKLIGTACELVKKAWRA 512
           D                    +    +   +MQ ++    A+   + G+A +++K A + 
Sbjct: 744 DKQVEFCKQNGYVTTIFNRKRYVSEINDRNYMQREFGKRIAMNMPIQGSAADIIKIALKN 803

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             Q  L+L            +    I    +  +P++ + + ++ V I++  S +L
Sbjct: 804 IDQEFLKL--------NLKAKIIAQIHDELIFEIPQVELIQVQKIVKILMEDSTKL 851


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 148/434 (34%), Gaps = 76/434 (17%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
               R +    +   +L    D E  L  +   +   G  +   L+ +L +  +      
Sbjct: 517 HELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMA 576

Query: 221 DEDIVKLTDGIIR----SSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSN 269
           +E    L  G +     +      L+  LF   G+      +        ++  +L+  +
Sbjct: 577 EEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVS 636

Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                   ++   A   +  LK  +  L +A  +DGR+  T Q   A+ TGR S      
Sbjct: 637 PESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVTDGRVHTTFQ-QNAASTGRLSSTAPNL 695

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-------NGKKLVVAD 380
           QN+P +                              +R   I +         + L+ AD
Sbjct: 696 QNIPIRT------------------------DEGRRIRGAFIVAPKVLDGVEYEGLLTAD 731

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++  +A ++  I+A+A+GED++    ++ F    ++V+ + RA  K M   L 
Sbjct: 732 YSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLA 791

Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481
           Y     G AK     +   G     + +       F      ++H               
Sbjct: 792 YGLSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSL 851

Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFA 529
                 +   ++     A+   + GTA +++K A    H+ +       ++   + +   
Sbjct: 852 PDLDSPNRTRREAAERAALNAPIQGTAADIIKIAMINIHRRLQEEKLKTRMLLQVHDEII 911

Query: 530 CVVQEGGSISARRV 543
             V  G   +A+R+
Sbjct: 912 LEVAVGEREAAQRI 925



 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
           +Q  + DI+   M N  +          ++L VHDEI+ E       +   +    M++ 
Sbjct: 874 IQGTAADIIKIAMINIHRRLQEEKLKTRMLLQVHDEIILEVAVGEREAAQRILVEEMSEA 933

Query: 655 PS 656
             
Sbjct: 934 IE 935


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 109/303 (35%), Gaps = 63/303 (20%)

Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           + +LA D  L ++      + KL     + L + ++   GR+  +      + TGR S  
Sbjct: 2   LQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSST 60

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A +G K++  D + 
Sbjct: 61  DPNLQNIP------------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQ 96

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AF +G+DI+  T A+    PID+VS EQR   K +   L Y  
Sbjct: 97  IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGM 156

Query: 444 G----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478
                AK            + ++ +       + +                       + 
Sbjct: 157 SAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEI 216

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACV 531
            S +   +      A+   + GTA +++KKA          +  G ++L   + +     
Sbjct: 217 TSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFE 276

Query: 532 VQE 534
           V+E
Sbjct: 277 VKE 279


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 137/410 (33%), Gaps = 79/410 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E  L  +   +   G  +D   + KL+E  A   +       ++    I +     
Sbjct: 497 LADVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKEI-NLGSPK 555

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L++ LF    +     ++                  H  +  L       RL  +    
Sbjct: 556 QLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAYLLAHRDATRLRQT---- 611

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +  L + +S  D R+  T     A+ TGR S      QN+P +               
Sbjct: 612 --VEGLLKTISPRDARIHTTFNQTIAA-TGRLSSTDPNLQNIPIRT-------------- 654

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   +   G + L+ AD + IE R++A ++ ++  I AF +GED
Sbjct: 655 ----------EEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAFNSGED 704

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +  T A+ F+    +V++E RA  K M   L Y     G ++  K         + ++ 
Sbjct: 705 FHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAYGLSAYGLSQQLKIGVDEAKGLMDEYF 764

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
           +       +      E+                      +   ++     A+   + G+A
Sbjct: 765 ERFGGVRDYLRSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSA 824

Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            +++K A             K + +LQ+  +L    A   +E      RR
Sbjct: 825 ADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGEREALEELVRR 874



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 28/251 (11%)

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           ++E R I +   +  GY+       +         + +    + + ++ ED+    +  +
Sbjct: 654 TEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAFNSGEDFHSVTAARV 713

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARR 542
           +                     V +  RAK + +   L   L+        + G   A+ 
Sbjct: 714 FSVQPGE---------------VTQEMRAKIKAMNYGLAYGLSAYGLSQQLKIGVDEAKG 758

Query: 543 VANVPRLVMRRHKRDVH-IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           + +         +  +  IV+ + +      + G   YL   TS   + R    ++  N 
Sbjct: 759 LMDEYFERFGGVRDYLRSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRREMAERMALNA 818

Query: 602 -VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTK 653
            +Q  + D++   M     +         ++L VHDE+V E       ++  L    M  
Sbjct: 819 PIQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGEREALEELVRRDMGS 878

Query: 654 NPSWAKGLPLK 664
               A  +PL 
Sbjct: 879 AVEMA--VPLD 887


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 83/539 (15%), Positives = 160/539 (29%), Gaps = 78/539 (14%)

Query: 46  DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D T+            + D +   V HN+     +F +              + LA    
Sbjct: 380 DTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEHGW---EIAGVTMDTALAAYLV 436

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            P     A  AL+      ++    A     F            ++A  V          
Sbjct: 437 KPGRRSFALDALSIEYLHRELAPAAADGQLAFGTDEQAEADALMSQARAVLDLGEALGGK 496

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             +V A   L        D E    LL   +   G   D   +  +++  A   ++  ++
Sbjct: 497 LEEVGAVELLH-------DVELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQQAVKE 549

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                     +      L+   F    +     ++    +            +  L  + 
Sbjct: 550 AHAAVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIM 608

Query: 284 SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                  +L      L + +++DGR+  T     A+ TGR S      QN+P +      
Sbjct: 609 LRHREQARLRSTVEGLIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRT----- 662

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +   G + L+ AD + IE RV+A ++ +   
Sbjct: 663 -------------------DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDLGL 703

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
           I+AF +GED++ T  ++ F+     V  E R   K M   L Y     G ++      + 
Sbjct: 704 IEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEPAE 763

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493
             + +  + +       +      E+                      +   ++     A
Sbjct: 764 ARVLMDTYFERFGGVRDYLRRVVDEARATGYTATMLGRRRYLPDLNSDNRQRRESAERMA 823

Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542
           +   + GTA ++VK A     +           +LQ+  ++    A   +E      R 
Sbjct: 824 LNAPIQGTAADIVKVAMLNVDRALTDAKLSSRLLLQVHDEIVLEVAPGEREQVETLVRH 882


>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
 gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
          Length = 912

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 88/534 (16%), Positives = 172/534 (32%), Gaps = 98/534 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + HN  F+  L   TL ++   +    + +L         L ++   +   + + K    
Sbjct: 408 IGHNLKFDLSLIFHTLELEHTGE-IYDSMIL-------GWLYDSIAPIGLDKQMLKWF-N 458

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-------- 180
             +I+     + D        A          +Y   D  AT  L+ RL  +        
Sbjct: 459 HTMISFDSVVAKDENFSQVNIAAAT-------QYAAEDAIATFRLYHRLEEVFYKREWSS 511

Query: 181 -----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                +  E     +   +   G ++D+ L+  L+E  ++   +L   I +L      + 
Sbjct: 512 ILELANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELCGETF-NL 570

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTL---KSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L   LF   G+      +G L   +  L           LIL+    +      +
Sbjct: 571 NSPQQLAHILFNRLGLKAGRSVKGGLSTDERTLLAIIDAHPVIALILDYREVNKLKSTYI 630

Query: 293 NTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             L    + +   R+  +    G + TGR S      QN+P                   
Sbjct: 631 EPLLRFGSANDKHRIYTSFLQSG-TATGRLSSKSPNLQNIP------------------- 670

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   I+  G  L+  D + IE R+LA    +   I++F   +DI+ 
Sbjct: 671 -----VRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQDKDIHF 725

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T A+ F     +++ ++RAI K +   L Y  G    A+  +         ++ +    
Sbjct: 726 ETAARLFGV---ELAAQKRAIAKSINFGLIYGMGSKKLAQTLQISLKEAKNYIESYFALF 782

Query: 467 KSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            +   F                      +   ++   +M+  +    +     G+A +L+
Sbjct: 783 PTIKNFLNAQKEFLLENGYSQTLLGHRRYFDFKNATDFMKANFLREGINSIFQGSAADLI 842

Query: 507 KKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           K +    H+         +LQ+  +L        QE   I A+  A +   +  
Sbjct: 843 KLSMCEIHKRYGHSDFKMLLQVHDEL---IFEAPQEKAHIYAQEAAQIMNHIYE 893



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETP-DTPYFSVGTLCSLM 651
             +I Q  + D++   M    K      + ++L VHDE++ E P +  +        +M
Sbjct: 830 INSIFQGSAADLIKLSMCEIHKRYGHSDFKMLLQVHDELIFEAPQEKAHIYAQEAAQIM 888


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 146/416 (35%), Gaps = 74/416 (17%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I   G  +D + +  L+   A   K+  +D   +    I +      L++ LF   G+ 
Sbjct: 498 EIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEI-NLGSPKQLQVVLFDELGMP 556

Query: 253 LVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
                          L+S+     H  +  L     + RL ++      ++ L +AV+ D
Sbjct: 557 KTKKTKTGYTTDADALQSLFESTQHPFLQHLLAHRDVTRLKTT------VDGLLKAVADD 610

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  T     A+ TGR S      QN+P +                             
Sbjct: 611 GRIHTTFHQTIAA-TGRLSSTDPNLQNIPIRT------------------------DEGR 645

Query: 363 CVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   +   G  +L+ AD + IE R++A ++G++  I+AF +GED++    +KAF+ P 
Sbjct: 646 RIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPT 705

Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
            +V+ EQR   K M   L Y     G A+  +  A+     ++ +         +     
Sbjct: 706 GEVTAEQRRRVKAMSYGLAYGLSEYGLAQQLRIPAAEAREQMEAYFSRFGGVRDYLQSIV 765

Query: 478 AESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW------ 510
            E+                      +   ++     A+   + G+A +++K A       
Sbjct: 766 EEARKKGYTETILGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVFQA 825

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               +   ++   + +     + +G   +   +         +    + + +   R
Sbjct: 826 LEASELTSRMLLQVHDELVLEIADGERAAVESLVREHMGNAFQLSVPLEVSVGVGR 881


>gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
 gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
          Length = 890

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/518 (13%), Positives = 159/518 (30%), Gaps = 88/518 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107
           + L + L D+ +     +     +  ++ LGI +         +LA          G   
Sbjct: 369 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 425

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L N+              +GK    +          +  T+ + +   +          
Sbjct: 426 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 477

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L
Sbjct: 478 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 535

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283
                 +      L + LF    +     ++     ++  +      + +  D++  R  
Sbjct: 536 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 594

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S   +   +N L + + +DG++         + TGR S      QN+P            
Sbjct: 595 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 640

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +       L   D + +E RVLA ++ E   ++AF
Sbjct: 641 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 688

Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
             G DI+  T  K F    +D+V+   R   K +   + Y     G AK           
Sbjct: 689 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 748

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            +  + +       +                            + +  ++      A+  
Sbjct: 749 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 808

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            + G+A +++K A             K + +LQ+  +L
Sbjct: 809 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 846


>gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
 gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
          Length = 883

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 70/531 (13%), Positives = 158/531 (29%), Gaps = 88/531 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSSLKNAC 113
           L D+ +     +     +  ++   +DI         +LA          G    L N+ 
Sbjct: 368 LEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVLANSY 424

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                        +GK    +          +  T+ + +   +              + 
Sbjct: 425 QEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP-------ELQQ 474

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  + ++   +   G ++    ++K++  +      L   I +L      
Sbjct: 475 HEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF- 533

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF    +     ++     ++  +      + +  D++  R  S   + 
Sbjct: 534 NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQST 593

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +N L + + +DG++         + TGR S      QN+P                  
Sbjct: 594 -YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------------ 633

Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +       L   D + +E RVLA ++ E   ++AF  G DI
Sbjct: 634 ------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 687

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  K F    +D+V+   R   K +   + Y     G AK            +  + 
Sbjct: 688 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 747

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       +                            + +  ++      A+   + G+A
Sbjct: 748 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 807

Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            +++K A             K + +LQ+  +L         +       ++
Sbjct: 808 ADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 858


>gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1]
          Length = 883

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/518 (13%), Positives = 159/518 (30%), Gaps = 88/518 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107
           + L + L D+ +     +     +  ++ LGI +         +LA          G   
Sbjct: 362 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 418

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L N+              +GK    +          +  T+ + +   +          
Sbjct: 419 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 470

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L
Sbjct: 471 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 528

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283
                 +      L + LF    +     ++     ++  +      + +  D++  R  
Sbjct: 529 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 587

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S   +   +N L + + +DG++         + TGR S      QN+P            
Sbjct: 588 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 633

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +       L   D + +E RVLA ++ E   ++AF
Sbjct: 634 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 681

Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
             G DI+  T  K F    +D+V+   R   K +   + Y     G AK           
Sbjct: 682 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 741

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            +  + +       +                            + +  ++      A+  
Sbjct: 742 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 801

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            + G+A +++K A             K + +LQ+  +L
Sbjct: 802 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839


>gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191]
 gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191]
          Length = 862

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 112/360 (31%), Gaps = 58/360 (16%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           ++ E  L  +   + + G  +D   +    + +  E   +  DI K     I +      
Sbjct: 461 NELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDINKDAQREI-NVNSPKQ 519

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295
           L   LF    +  V  ++           + QL     + +      +  KL +     L
Sbjct: 520 LGALLFDQLKLPSVKKTK--TGYSTDEEVLQQLVNLHPIVKKILEYRSNAKLKSTYVDNL 577

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
                 + R+   L   G + TGR S      QN+P +                      
Sbjct: 578 IMLADGNSRVHTYLDQTG-TVTGRLSSSSPNLQNIPIRT--------------------- 615

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +A  GK L+  D + I+ R+LA  + +   + AF  G DI+  T A+
Sbjct: 616 ---PKGRMLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLVNAFKEGGDIHTKTAAE 672

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471
            F    + VS E R+  K +   + Y  G     +            +  +    K    
Sbjct: 673 VFGVMREMVSDEMRSSAKAINFGIIYGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVRE 732

Query: 472 FEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAW 510
           + D   A +                         M       A+   + G + +++KKA 
Sbjct: 733 WIDKNIALARERGYVKTLLGHIRYLPEFKMGSGHMASFAQRAAINTIVQGGSADVIKKAM 792



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 10/129 (7%)

Query: 538 ISARRVANVPRLVMRRHKR---DVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTY 593
           IS R            +K     +   +  +R   Y     G   YL           ++
Sbjct: 711 ISVREAKEYIDNYFAVYKGVREWIDKNIALARERGYVKTLLGHIRYLPEFKMGSGHMASF 770

Query: 594 GGKLTEN-IVQAISRDILCEGMKNA--TKNGYDI--VLTVHDEIVSETPDTPYF-SVGTL 647
             +   N IVQ  S D++ + M +      G ++  +L VHDE++ E P+         +
Sbjct: 771 AQRAAINTIVQGGSADVIKKAMADIFNHYKGTEVKMLLQVHDELIFELPEKNLLKEAAVI 830

Query: 648 CSLMTKNPS 656
            + M     
Sbjct: 831 KNKMEHTIE 839


>gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
 gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
          Length = 883

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/518 (13%), Positives = 159/518 (30%), Gaps = 88/518 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107
           + L + L D+ +     +     +  ++ LGI +         +LA          G   
Sbjct: 362 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 418

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L N+              +GK    +          +  T+ + +   +          
Sbjct: 419 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 470

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L
Sbjct: 471 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 528

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283
                 +      L + LF    +     ++     ++  +      + +  D++  R  
Sbjct: 529 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 587

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S   +   +N L + + +DG++         + TGR S      QN+P            
Sbjct: 588 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 633

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +       L   D + +E RVLA ++ E   ++AF
Sbjct: 634 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 681

Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
             G DI+  T  K F    +D+V+   R   K +   + Y     G AK           
Sbjct: 682 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 741

Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496
            +  + +       +                            + +  ++      A+  
Sbjct: 742 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 801

Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            + G+A +++K A             K + +LQ+  +L
Sbjct: 802 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839


>gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
 gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
          Length = 890

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/531 (13%), Positives = 158/531 (29%), Gaps = 88/531 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSSLKNAC 113
           L D+ +     +     +  ++   +DI         +LA          G    L N+ 
Sbjct: 375 LEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVLANSY 431

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                        +GK    +          +  T+ + +   +              + 
Sbjct: 432 QEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP-------ELQQ 481

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  + ++   +   G ++    ++K++  +      L   I +L      
Sbjct: 482 HEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF- 540

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF    +     ++     ++  +      + +  D++  R  S   + 
Sbjct: 541 NINSPKQLGVILFEKLKLAPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQST 600

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +N L + + +DG++         + TGR S      QN+P                  
Sbjct: 601 -YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------------ 640

Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +       L   D + +E RVLA ++ E   ++AF  G DI
Sbjct: 641 ------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 694

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  K F    +D+V+   R   K +   + Y     G AK            +  + 
Sbjct: 695 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 754

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       +                            + +  ++      A+   + G+A
Sbjct: 755 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 814

Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            +++K A             K + +LQ+  +L         +       ++
Sbjct: 815 ADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 865


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 84/560 (15%), Positives = 159/560 (28%), Gaps = 95/560 (16%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            Y +  EP        +    +     L D  V  + H+     +     LG        
Sbjct: 354 GYVFGGEPA----LISEEDS-AAFSALLSDPNVGKIGHSMK---VQIHAWLGEGYTLAGI 405

Query: 94  ICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           +  + +      P   +     L   +            L        +D         +
Sbjct: 406 VGDTEIDAYLLHPDQRTYDFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDLAARAVATH 465

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            ++         +   +A RE+          E  +  +   +  RG  +D D + +L  
Sbjct: 466 DLRDAFARALETEEQSDALREM----------ELRVCDVLARMEQRGIAVDADQLARLHA 515

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------- 260
                  +      +       +      L+  LF   G+     ++             
Sbjct: 516 DFDARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALEQL 575

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQFYGASRT 317
           L  I    +   LA    L  L +   AI     +  L  ++  D R+R T Q   A+ T
Sbjct: 576 LVKISMREDDQALAGQNFLTGLLAHRDAIKLRQSVEGLQRSLGDDQRIRTTYQQTVAA-T 634

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376
           GR S      QN+                                 +R   +  +G   L
Sbjct: 635 GRLSSTDPNLQNI------------------------HARTEEGQKIREVFVPGDGYDYL 670

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R++A ++G+   I AF  G D++    ++ F     +V+  QR+  K M 
Sbjct: 671 MTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKIKAMS 730

Query: 437 LALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAESH----------- 481
             L Y   A                 +  +         + D   A++            
Sbjct: 731 YGLVYGLSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEYLDGLVAQARKDGFTQTLLGR 790

Query: 482 ----------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLW 521
                     +  +++     A+   + G+A +++K A               + +LQ+ 
Sbjct: 791 RRYLPELSSTNRQVRESAERMALNAPIQGSAADIIKIAMLNVERELAAAQLSSRVLLQVH 850

Query: 522 KDLTEGFACVVQEGGSISAR 541
            +L    A    E      R
Sbjct: 851 DELVLEVAASEAEQVEAIVR 870


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/490 (15%), Positives = 149/490 (30%), Gaps = 66/490 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           + D     V HN+     +F +              + LA     P     A  AL+   
Sbjct: 402 IADPDRPKVLHNAKGAMRVFPEHGW---SIAGVTMDTALAAYLVKPGRRSFALDALSVEY 458

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIP 179
              ++    A   +   G+ D+   +           L   + ++  E   REL      
Sbjct: 459 LHRELAPAAAADGQLAFGADDTAEAEALMTQARAVLDLGDAFAEKLDEVGAREL------ 512

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E     L   +   G   D D +  +++  A   ++  ++          +     
Sbjct: 513 LHQVELPTSALLARLERHGIAADRDHLEAMEQQFAGAVQQAVKEAHASVGHEF-NLGSPK 571

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+   F    +     ++    +            +  L  +        +L      L
Sbjct: 572 QLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQARLRSTVEGL 631

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + + +DGR+  T     A+ TGR S      QN+P +                      
Sbjct: 632 IKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRT--------------------- 669

Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE RV+A ++ +   I+AF +GED++ T  +
Sbjct: 670 ---DEGRAIRHGFVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 726

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F      V  E R   K M   L Y     G ++            +  + +      
Sbjct: 727 QVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPGEARGLMDTYFERFGGVR 786

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +      E+                      +   ++     A+   + GTA ++VK A
Sbjct: 787 DYLRRVVDEARATGYTETMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVA 846

Query: 510 WRAKHQGVLQ 519
                + + +
Sbjct: 847 MLNVDRALTE 856


>gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
          Length = 883

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 70/512 (13%), Positives = 155/512 (30%), Gaps = 88/512 (17%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSSLKNAC 113
           L D+ +     +     +  ++   +DI         +LA          G    L N+ 
Sbjct: 368 LEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVLANSY 424

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                        +GK    +          +  T+ + +   +              + 
Sbjct: 425 QEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP-------ELQQ 474

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  + ++   +   G ++    ++K++  +      L   I +L      
Sbjct: 475 HEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF- 533

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L + LF    +     ++     ++  +      + +  D++  R  S   + 
Sbjct: 534 NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQST 593

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +N L + + +DG++         + TGR S      QN+P                  
Sbjct: 594 -YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------------ 633

Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +       L   D + +E RVLA ++ E   ++AF  G DI
Sbjct: 634 ------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 687

Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           +  T  K F    +D+V+   R   K +   + Y     G AK            +  + 
Sbjct: 688 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 747

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +       +                            + +  ++      A+   + G+A
Sbjct: 748 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 807

Query: 503 CELVKKAWRA----------KHQGVLQLWKDL 524
            +++K A             K + +LQ+  +L
Sbjct: 808 ADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 887

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 115/364 (31%), Gaps = 61/364 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E+ +  +   +   G  +D   +  +     +   ++++ I +       +      L
Sbjct: 486 DIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQL 544

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295
              LF    + ++  ++       +   + +LA +      ++  R  S   +   +  L
Sbjct: 545 GHILFEEMKLPVIKKTK--TGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGLL 602

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               S+D ++         ++TGR S      QN+P                        
Sbjct: 603 DAIHSADQKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------------ 637

Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   + S  G ++  +D + IE RVLA I  ++    AF  G+DI+  T  
Sbjct: 638 VRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 697

Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           + F+    ++V+   R   K +   + Y     G ++            +  + +     
Sbjct: 698 RIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDAYFKEYPGV 757

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             + D                          S     +      A+   + G+A +++K 
Sbjct: 758 KKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKI 817

Query: 509 AWRA 512
           A   
Sbjct: 818 AMIK 821


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/562 (16%), Positives = 183/562 (32%), Gaps = 110/562 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
           + + ID ET S             +     L   +   +        E   +P +     
Sbjct: 341 NYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIETKGKI 382

Query: 59  -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
                        L       +  N  F+  + K      IP   +  T + A      S
Sbjct: 383 YIEKHYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440

Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164
            +    LA  +  H   K E+       F   S++    Y C  A+   + + +F E  K
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSCEDADITFRLFNIFTEKLK 500

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D     EL++    + + E     +   + + G  +D + + +  + + +E + ++ +I
Sbjct: 501 ED-----ELYEL---MHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277
           +K + GI  +      +   LF    + L +  +     I         H +I  L K  
Sbjct: 553 IK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIKHR 611

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            + +L S+ +     + L E ++    RL  +      + TGR +      QN+P     
Sbjct: 612 RIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTRTATGRITSINPNLQNIP----- 660

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R      NG   + AD + IE  +LA ++ ++
Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
             IKAF N +DI++ T +K F     +K++   R I K +   + Y+      AK     
Sbjct: 702 TLIKAFENNKDIHIETASKLFKIEEKEKITPNLRRIAKSINFGIIYRMSDFRLAKELGIT 761

Query: 452 ASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYP 490
                  +  +  +      F                        ++  S++   +    
Sbjct: 762 KEEAKGFINSYFDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAE 821

Query: 491 EFAVKDKLIGTACELVKKAWRA 512
             A+   + G+A + +K A   
Sbjct: 822 RIAINSTIQGSAADYMKIAMIK 843



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             + +Q  + D +   M          K    I+L VHDE++ E+P      V  +  +M
Sbjct: 825 INSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHDEMLIESPIKEENEVKKILKIM 884

Query: 652 TKNPSWAKGLPLKA 665
            +  ++   LPL+A
Sbjct: 885 MET-AYTLNLPLRA 897


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 882

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 116/364 (31%), Gaps = 61/364 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E+ +  +   +   G  +D   +  +     +   ++++ I +       +      L
Sbjct: 481 DIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQL 539

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295
              LF    + ++  ++    + +    + +LA +      ++  R  S   +   +  L
Sbjct: 540 GHILFEEMKLPVIKKTKTGYSTAVD--VLEKLAPEAPIVANILQYRQISKIQSTYVIGLL 597

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               S+D ++         ++TGR S      QN+P                        
Sbjct: 598 DAIHSADQKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------------ 632

Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   + S  G ++  +D + IE RVLA I  ++    AF  G+DI+  T  
Sbjct: 633 VRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692

Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           + F+    ++V+   R   K +   + Y     G ++            +  + +     
Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDAYFKEYPGV 752

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             + D                          S     +      A+   + G+A +++K 
Sbjct: 753 KKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKI 812

Query: 509 AWRA 512
           A   
Sbjct: 813 AMIK 816


>gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
 gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
          Length = 883

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/517 (13%), Positives = 158/517 (30%), Gaps = 88/517 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSS 108
            L + L D+ +     +     +  ++ LGI +         +LA          G    
Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLGV 419

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L N+              +GK    +          +  T+ + +   +           
Sbjct: 420 LANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L 
Sbjct: 471 -ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF    +     ++     ++  +      + +  D++  R  S
Sbjct: 530 GEKF-NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQIS 588

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              +   +N L + + +DG++         + TGR S      QN+P             
Sbjct: 589 KIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------- 633

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +       L   D + +E RVLA ++ E   ++AF 
Sbjct: 634 -----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            G DI+  T  K F    +D+V+   R   K +   + Y     G AK            
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           +  + +       +                            + +  ++      A+   
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           + G+A +++K A             K + +LQ+  +L
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839


>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
          Length = 882

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 116/364 (31%), Gaps = 61/364 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E+ +  +   +   G  +D   +  +     +   ++++ I +       +      L
Sbjct: 481 DIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQL 539

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295
              LF    + ++  ++    + +    + +LA +      ++  R  S   +   +  L
Sbjct: 540 GHILFEEMKLPVIKKTKTGYSTAVD--VLEKLAPEAPIVANILQYRQISKIQSTYVVGLL 597

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               S+D ++         ++TGR S      QN+P                        
Sbjct: 598 DAIHSADQKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------------ 632

Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   + S  G ++  +D + IE RVLA I  ++    AF  G+DI+  T  
Sbjct: 633 VRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692

Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           + F+    ++V+   R   K +   + Y     G ++            +  + +     
Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDAYFKEYPGV 752

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             + D                          S     +      A+   + G+A +++K 
Sbjct: 753 KKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKI 812

Query: 509 AWRA 512
           A   
Sbjct: 813 AMIK 816


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 141/409 (34%), Gaps = 72/409 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSS 235
           L + E  L  L   +   G  +D+D +  L+E          E       + T G+  + 
Sbjct: 526 LQELEIPLSRLLARMELTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNL 585

Query: 236 RQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAIL---K 291
                L+  LF    +     ++ G    + S  ++ +  +   L  L +   A      
Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHRDATKLRQT 645

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E V+ DGR+  T     A+ TGR S      QN+P +  +               
Sbjct: 646 VEGLLETVAPDGRIHTTYS-QTAAATGRLSSLHPNLQNIPVRTEA--------------- 689

Query: 352 TIADPLGLASDCVRSCIIA----SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                       +R   +A         L+ AD + IE R++A ++ ++  I+AF  GED
Sbjct: 690 ---------GRRIRGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGED 740

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++    ++ F    D+V+ EQRA  K M   L Y     G +K  K         ++ + 
Sbjct: 741 LHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF 800

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   +     A++                      +  ++D     A+   + G+A
Sbjct: 801 DRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSA 860

Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            +++K+A               + +LQ+  +L         E  +   +
Sbjct: 861 ADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLK 909



 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            AR +           +  +  V+  +R+  Y+  ++G   YL   +S   + R    + 
Sbjct: 791 EARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERA 850

Query: 598 TENI-VQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETPDTP-YFSVGTLCS 649
             N  +Q  + DI+   M +      ++G    ++L VHDE++ E P      S   L  
Sbjct: 851 ALNAPIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKE 910

Query: 650 LMTKN 654
            M + 
Sbjct: 911 RMGRA 915


>gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
 gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
          Length = 879

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 120/362 (33%), Gaps = 59/362 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  +  +   +   G  +    + ++     +  K L+  I  L       +     L
Sbjct: 480 DIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLEASIYTLAGSEFNIA-SPKQL 538

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296
            + LF   G+  +  ++    + +    + QL     +  L      I KLN+     L 
Sbjct: 539 GVVLFEDLGLPPIKKTKTGYSTAVE--VLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLV 596

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + ++ +G++    +   A +TGR S      QN+P +                       
Sbjct: 597 KDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTR----------------------- 632

Query: 357 LGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + AS+ + ++  D + IE RVLA IA +   I AF +  DI+  T + 
Sbjct: 633 -IEEGKKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASD 691

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
                +D+V+   R   K +   + Y     G +             + ++ +  K    
Sbjct: 692 VNGVSLDEVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDK 751

Query: 472 FE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           +                            + +  + +     A+   + GTA +++K A 
Sbjct: 752 YMTDIVDFAREHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAM 811

Query: 511 RA 512
             
Sbjct: 812 VN 813



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +Q  + DI+   M N       T     ++L VHDE++ +            +  +M + 
Sbjct: 799 IQGTAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTKEMIKIMEEA 858


>gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 205

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 103/206 (50%), Gaps = 12/206 (5%)

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
           E  E+      +  P F + D+    AC++ K+AWR  H  +   W+ L       +   
Sbjct: 5   EAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHP 63

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMR 589
            +           + ++  +  + + LPS R L Y+  +    G  SY+ T   T +  R
Sbjct: 64  ETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTR 118

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +
Sbjct: 119 ITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAA 178

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           LM   P WA+GLPL AEG++  RYRK
Sbjct: 179 LMATPPPWAQGLPLAAEGFQTHRYRK 204


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 139/437 (31%), Gaps = 62/437 (14%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D E +R+  +    ++  E  L  +   +   G   D D + +L+   A E K   +   
Sbjct: 482 DAELSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAY 541

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI-TQLAKDLILNR 281
            +      +      L+  LF    +      +    T    L      T+      L R
Sbjct: 542 AVIGREF-NLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHLLR 600

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     ++ L ++VS DGR+  T     A+ TGR S      QN+P +        
Sbjct: 601 HRDVARLKSTVDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT------- 652

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +   G + L+ AD + IE R++A ++G++  I+
Sbjct: 653 -----------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIE 695

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF +G D +  T +  F   + +V+ +QR   K M   L Y     G ++     A    
Sbjct: 696 AFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNYGLAYGLSAFGLSQQLGITAEEAR 755

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
             ++ +         +     A +                      +   ++     A+ 
Sbjct: 756 GLMEVYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERMALN 815

Query: 496 DKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
             + G+A +++K A               ++   + +     V  G   +   +      
Sbjct: 816 APIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELVFEVAPGERATLEELVRREMG 875

Query: 550 VMRRHKRDVHIVLPSSR 566
                   + + +   R
Sbjct: 876 GAYPLSVPLEVSVGEGR 892



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595
           +  AR +  V        +  +  V+  +R+  Y+  + G   YL    S   + R    
Sbjct: 751 AEEARGLMEVYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAE 810

Query: 596 KLTENI-VQAISRDILCEGMKNAT----KNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           ++  N  +Q  + DI+   M +        G    ++L VHDE+V E       ++  L 
Sbjct: 811 RMALNAPIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELVFEVAPGERATLEELV 870

Query: 649 SL-MT 652
              M 
Sbjct: 871 RREMG 875


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 152/485 (31%), Gaps = 131/485 (27%)

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G  +D D +  L    +   +  +    +     I +      L++ LF  
Sbjct: 523 RVLGVMEATGIAVDTDHLESLHSDFSDRIRAAEAAAFEEIGEQI-NLGSPKQLQVILFEK 581

Query: 249 TGIDLVDM-------SEGTLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            G+                L+++     H  +  L +     RL  +      +  L +A
Sbjct: 582 LGLPKTKKTKTGYTTDAAALEALYEKEPHPFLQYLLEHRDATRLKVT------VEGLLKA 635

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V+SDGR+  T     A+ TGR S      QN+P +  +                      
Sbjct: 636 VASDGRIHSTFNQTVAA-TGRLSSTDPNLQNIPVRTEA---------------------- 672

Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   +A  G   L+ AD + IE R++A ++ ++  I+AF  GED++    AKAF
Sbjct: 673 --GRQIRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAF 730

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PID+V+ + R   K M   L Y   A     +A+   +   +                
Sbjct: 731 GVPIDEVTPDMRRRVKAMSYGLAYGLSA---FGLAAQLKISRDEAKDQ------------ 775

Query: 478 AESHHLWMQDQYPEFA-VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                  M+  +  F  V+D L     E  +  +     G  +   DLT           
Sbjct: 776 -------MEAYFARFGGVRDYLQDVVTEATRNEYTETIFGRRRYLPDLTST--------- 819

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                                  +   S+ R+  +                         
Sbjct: 820 ---------------------NRMRRESAERMALNAP----------------------- 835

Query: 597 LTENIVQAISRDILCEGMKNATK----NGY--DIVLTVHDEIVSETPDTPYFSVGTLC-S 649
                +Q  + DI+   M N  K     G    ++L VHDE+V E        +  L   
Sbjct: 836 -----IQGSAADIIKVAMINLDKQIRAAGLTSRMLLQVHDELVLEVAAGERDELEKLVRD 890

Query: 650 LMTKN 654
            M   
Sbjct: 891 TMGTA 895


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/586 (14%), Positives = 183/586 (31%), Gaps = 123/586 (20%)

Query: 27   QAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKK 82
            QA        +    V+  D     ++S + S +  + + +  ++ + HN  +   +   
Sbjct: 486  QAYYLPF---FKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYHIKMLAN 542

Query: 83   TLGIDIPSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLTKMEE----GKALIAR 134
              G+ + +   I         G      +      L L+  EH+   +E    GK  +  
Sbjct: 543  Y-GVTVKNFDDIMVMSYVLNCGKHGHEMDEIVENVLLLDPKEHIIPEKEVLGIGKKKVTL 601

Query: 135  FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 +    + C    H    +   +  K  ++ + +L +        E+ L      I
Sbjct: 602  MEADIVSVVHFAC---QHADLTKQAYDVLKSALDKSPKLTQF---YEGIEKPLVETLAGI 655

Query: 195  NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII---------------------- 232
              +G  +D   ++K++    ++ K +   I +                            
Sbjct: 656  EMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEEEIESMIIEMD 715

Query: 233  ---------RSSRQTYALRMYLFLITGIDLVDMSEGTLKS-ILSHSNITQLAKD------ 276
                      +      L   +F   GI      +  +   IL+   + +LA +      
Sbjct: 716  EMKQEASEEFNINSNRQLGQVIFEKLGIGTKLRKKTKVGDYILNAEVLQKLAAEGHSIAK 775

Query: 277  LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             IL   A +      ++ L + ++    R+  T Q    + TGR S  +   QN+P +  
Sbjct: 776  HILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQN-ALTVTGRLSSVMPNIQNIPVRT- 833

Query: 336  SEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R C I  S+   ++  D + +E R+LA IA 
Sbjct: 834  -----------------------AEGKQIRRCFISPSDDYVIMKVDYSQVELRILAHIAN 870

Query: 395  EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
                  AF   +D++  T ++ FN P+D+V K  R   K +   + Y       +K    
Sbjct: 871  IPVLKNAFKENKDVHAITASQVFNVPLDQVDKSTRNKAKAINFGIIYGMSEFGLSKRIGV 930

Query: 451  MASHCGLDLQQFSQNVKSTSTFEDWEQ-----------AESHHLWMQDQY---------- 489
                    ++Q+ +       +                  +   W+              
Sbjct: 931  DTQAAKSFIEQYFKQYPGIKNYMTKTIEFCRKHGYVNTLFNRRCWIPGIEDQGFGGKSSF 990

Query: 490  -PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524
                ++   + GT+ ++ K A  + H+           ++Q+  ++
Sbjct: 991  GERTSINTPIQGTSADITKIAMNSLHKAFQEKGLRTRMIIQVHDEI 1036



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 581  NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIV 633
                     + ++G + + N  +Q  S DI    M +  K     G    +   VHDEIV
Sbjct: 978  GIEDQGFGGKSSFGERTSINTPIQGTSADITKIAMNSLHKAFQEKGLRTRMIIQVHDEIV 1037

Query: 634  SETPDTPYFSVGT-LCSLM 651
             E P     +V   +  LM
Sbjct: 1038 FEVPKDEVETVEPIIKELM 1056


>gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
 gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
          Length = 879

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%)

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   +L+K +      E  +  +   +   G  +    + ++     +  K L+  I  L
Sbjct: 472 ENMLDLYKNI------EIKVARVLANMEFEGIHVSKKALDEMSHEFDERIKVLEGSIYTL 525

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                  +     L + LF   G+ +V  ++    + +    + QL     +  L     
Sbjct: 526 AGSEFNIA-SPKQLGVVLFEDLGLPVVKKTKTGYSTAVE--VLEQLQYKHDIIPLIMEYR 582

Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            + KLN+     L + ++ +G++    +    ++TGR S      QN+P +         
Sbjct: 583 TLTKLNSTYAKGLVKDITREGKIHTRYE-QTLTQTGRLSSVNPNLQNIPTR--------- 632

Query: 343 TIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R   I ASN + ++  D + IE RVLA IA +   I A
Sbjct: 633 ---------------IEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAHIAQDKGMIDA 677

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +  DI+  T +     P+D+V+   R   K +   + Y     G +            
Sbjct: 678 FKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKE 737

Query: 458 DLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAVKD 496
            ++++ +  K       D  +    H +++  Y                       A+  
Sbjct: 738 FIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNKIIANLNARIAMNT 797

Query: 497 KLIGTACELVKKAWRAKHQGV 517
            + GTA +++K A  + +  +
Sbjct: 798 PIQGTAADIIKIAMISAYNYI 818



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           + ++       +     + V +     V             + +     +N     +   
Sbjct: 730 ITRKRAKEFIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNKIIANL 789

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS- 643
                      +Q  + DI+   M +A      +K    ++L VHDE++ +         
Sbjct: 790 --NARIAMNTPIQGTAADIIKIAMISAYNYIEESKVDAKLLLQVHDELIFDVSKDILEEF 847

Query: 644 VGTLCSLMTKN 654
              + ++M + 
Sbjct: 848 TDKMVAIMEEA 858


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 151/410 (36%), Gaps = 66/410 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            +EL   L    + E  L  +  ++  +G +ID     K    + ++   L+++I K   
Sbjct: 473 EKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAG 529

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284
               +      L   LFL   +     ++    T   +L + +    Q+A +L+  R   
Sbjct: 530 EEF-NINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYR-KL 587

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +      ++ + + V  D R+       G + TGR S      QN+P             
Sbjct: 588 AKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP------------- 633

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA +G KL+  D + +E RVLA ++ ++  +KA+  
Sbjct: 634 -----------VKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQE 682

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            +D++  T  K F     ++VS+EQR + K++  ++ Y     G AK            +
Sbjct: 683 KQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYI 742

Query: 460 QQFSQNVKSTSTF--EDWEQAESH-------------------HLWMQDQYPEFAVKDKL 498
           +++       + F  E  E AE H                   +  +++Q    AV   +
Sbjct: 743 KRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVV 802

Query: 499 IGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543
            GTA E++KK     +  +L      L   + +     +QE       + 
Sbjct: 803 QGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKT 852


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 151/410 (36%), Gaps = 66/410 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            +EL   L    + E  L  +  ++  +G +ID     K    + ++   L+++I K   
Sbjct: 475 EKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAG 531

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284
               +      L   LFL   +     ++    T   +L + +    Q+A +L+  R   
Sbjct: 532 EEF-NINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYR-KL 589

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +      ++ + + V  D R+       G + TGR S      QN+P             
Sbjct: 590 AKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP------------- 635

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA +G KL+  D + +E RVLA ++ ++  +KA+  
Sbjct: 636 -----------VKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQE 684

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            +D++  T  K F     ++VS+EQR + K++  ++ Y     G AK            +
Sbjct: 685 KQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYI 744

Query: 460 QQFSQNVKSTSTF--EDWEQAESH-------------------HLWMQDQYPEFAVKDKL 498
           +++       + F  E  E AE H                   +  +++Q    AV   +
Sbjct: 745 KRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVV 804

Query: 499 IGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543
            GTA E++KK     +  +L      L   + +     +QE       + 
Sbjct: 805 QGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKT 854


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/504 (16%), Positives = 146/504 (28%), Gaps = 129/504 (25%)

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           A  E    +  L+D E  L  +  T+   G  +D D +  L     +      ++   + 
Sbjct: 477 AELEASDSMSLLADLELPLVDVLMTMESTGIAVDTDHLDTLHAEFTERMLGAAQEAYAVI 536

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLI 278
              + +      L++ LF   G+     ++              +   H  +  L     
Sbjct: 537 GREV-NLGSPKQLQVVLFDELGMPRTKRTKTGYTTDADALQGLFAKTQHPFLEHLLAHRD 595

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           + RL  +      +  L + V+ DGR+  T     A+ TGR S      QN+P +  S  
Sbjct: 596 VTRLRQT------VEGLQKTVAPDGRIHTTYAQTIAA-TGRLSSADPNLQNIPIRTES-- 646

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397
                                    +R       G + L+ AD + IE R++A ++ +  
Sbjct: 647 ----------------------GRRIREAFCVGPGFETLLTADYSQIEMRIMAHLSEDAG 684

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF  GED +    AK F+     +    RA  K M   L Y   +     +    G+
Sbjct: 685 LIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMNYGLAYGLSS---YGLGQQLGI 741

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                          +D+ Q                V+D L G   E  +  + A   G 
Sbjct: 742 SPGDAQ------VLMDDYFQTFG------------GVRDYLHGVVDEARQTGFTATILGR 783

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +                                     D+       R +         
Sbjct: 784 RRYLP----------------------------------DLQSDNRQRREMA-------- 801

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
                      R            +Q  + D++   M    +       G  ++L VHDE
Sbjct: 802 ----------ERMALNAP------IQGSAADLIKVAMLGVDRALADAGLGSRMLLQVHDE 845

Query: 632 IVSETPDTPYFSVGTLC-SLMTKN 654
           +V E       ++  L    M   
Sbjct: 846 LVLEVAPGERDALEALVREQMAAA 869


>gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
 gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
          Length = 883

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/516 (13%), Positives = 153/516 (29%), Gaps = 86/516 (16%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-------SS 108
            L + L D+ +     +     +  ++   +DI         +LA               
Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGV 419

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L N+              +GK    +          +  T+ + +   +           
Sbjct: 420 LANSYQESYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +  +++    + E  + ++   +   G ++    ++K++  +      L   I +L 
Sbjct: 471 -ELQQHEQVHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L + LF    +     ++    T   +L          D IL+    S
Sbjct: 530 GEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLKYQSPIVDDILDYRQIS 588

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +N L + + +DG++         + TGR S      QN+P              
Sbjct: 589 KIQSTYINGLLDYIQADGKIHTRF-LQTLTATGRLSSVEPNLQNIP-------------- 633

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +       L   D + +E RVLA ++ E   ++AF  
Sbjct: 634 ----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKE 683

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+  T  K F    +D+V+   R   K +   + Y     G AK            +
Sbjct: 684 GYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFI 743

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
             + +       +                            + +  ++      A+   +
Sbjct: 744 NNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPI 803

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524
            G+A +++K A             K + +LQ+  +L
Sbjct: 804 QGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 183/576 (31%), Gaps = 86/576 (14%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A  D      D T   A     L   L D  +    H          K     + S+
Sbjct: 365 LAIAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEV--------KWGIHALRSR 416

Query: 92  RWIC-----TSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            W        + LA     P   +     LAL +     + ++G     +      D   
Sbjct: 417 GWTLAGVTSDTSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSG-DGQLSLLDDDGGA 475

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                 + ++            ++   +    L  L++ E  L  +   +   G  +D+D
Sbjct: 476 AKLAEQHMLE--ARAVVELAEVLDTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDVD 533

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------S 257
              +L++  AQ  +        +    I +      L+  LF    +             
Sbjct: 534 HFGELEKNFAQRIRVAANAAYDVIGEQI-NLGSPKQLQTVLFDKLDMPKTKKTKTGYTTD 592

Query: 258 EGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
              L+++     H  +  L +     RL  +      ++ L ++V+ DGR+  T     A
Sbjct: 593 ADALQALYEKTEHPFLAHLLEHRDATRLKVT------VDGLLKSVADDGRIHTTFNQTIA 646

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTI-------------QALNRGETIADPLGLAS 361
           + TGR S      QN+P +  +   + Q                    G +  D +G  S
Sbjct: 647 A-TGRLSSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGS 705

Query: 362 DCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
                     +G   L+ AD + IE R++A ++ +   I+AF  GED++    ++AF  P
Sbjct: 706 GSSGHDGGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVP 765

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           ID+V+ E R   K M   L Y     G A   K         +  +         +    
Sbjct: 766 IDEVTTEMRHRVKAMSYGLAYGLSAFGLAAQLKISRDEAKEQMDAYFARFGGVRDYLHDV 825

Query: 477 QAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            AE+                      +   +      A+   + GTA +++K A    H+
Sbjct: 826 VAEARRNEYTATLFGRRRYLPDLNSDNWQRRQSAERMALNAPIQGTAADIIKVAMINVHK 885

Query: 516 G----------VLQLWKDLTEGFACVVQEGGSISAR 541
                      +LQ+  +L    A   ++      R
Sbjct: 886 RLQSEELRSRMLLQVHDELVVEVATGERDAVEAVVR 921


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 190/562 (33%), Gaps = 123/562 (21%)

Query: 2   SKLFIDIE----TRSPQPLPKVGVWAYAEQAVITLC---AYAWDDEPVKLWDRTEQSAMP 54
             LFID E    +                   I L     Y+     + ++D        
Sbjct: 23  KYLFIDTEVAVKSFEDIDFFN---------DKIRLIQIGNYSK----IFVYDMFRIPQFS 69

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L + L ++ V+   HN  F+    K   G  I  +    T + ++     S  K++  
Sbjct: 70  EHLKELLENKGVI--GHNLKFDIKFLKTNFG--IFPQIVFDTMIASQLLSEDSREKHSLS 125

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL++      +++ +                  +        +    Y  +DV+  RE+F
Sbjct: 126 ALSYRLTDNHLDKSQQ----------------RSPWGIKNLTEEQLRYAAKDVQVLREIF 169

Query: 175 KRLIP------------------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
             L                          ++  E         I  RG  +D  L+  + 
Sbjct: 170 PVLRDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDML 229

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           + ++ + ++   D V+       S ++      +L    G+ L    +G+L S    S +
Sbjct: 230 QKVSTDYQREYIDFVRRYGVDPFSPQKVTN---WLTSKLGLKLPTTQKGSLSS--QDSAL 284

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +      + +L    S    L+ L E  +   +GR+    +  GA  TGR +      Q
Sbjct: 285 RRYIDREEVRKLLHIRSEKKILDKLKELKAHLINGRIYTQFKQIGAP-TGRMASMRPNLQ 343

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+ R                               +R       GKKL+VAD + IE R+
Sbjct: 344 NITRD------------------------------LRVLFRPPEGKKLIVADYSQIELRI 373

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            A    ++  IKAF+ G+D++  T +       D+++K++R + K +   L Y    +  
Sbjct: 374 AAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSL 433

Query: 449 KTMASH-CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF--------------- 492
              A +  G+D+      +  +  FE ++  +S H  +++   E                
Sbjct: 434 MEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVV 493

Query: 493 -----AVKDKLIGTACELVKKA 509
                AV   + GT  +L+K A
Sbjct: 494 RRFTEAVNFPVQGTGSDLLKMA 515



 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
           VQ    D+L   +    K        IV  VHDEI+ E  ++    +  +
Sbjct: 504 VQGTGSDLLKMAVVFFGKLKEDRDAGIVNLVHDEIIVECSESIADEIRDI 553


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 136/423 (32%), Gaps = 74/423 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           LSD E     L   +   G   D D + ++++  A   ++  ++          +     
Sbjct: 74  LSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPK 132

Query: 240 ALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            L+  LF   G+                L  +   ++  +L   ++ +R  +   +   +
Sbjct: 133 QLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTD-HELPVIMLRHREQARLRST--V 189

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S  GR+  T     A+ TGR S      QN+P +                   
Sbjct: 190 EGLIKTISPGGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------------------ 230

Query: 353 IADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R   +   G + L+ AD + IE RV+A ++ +D  I+AF +GED++ T
Sbjct: 231 ------DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTT 284

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467
             ++ F     +V  E R   K M   L Y     G +      A      +  F +   
Sbjct: 285 VASQVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGLSGQLGIGADEARRLMDTFFERFG 344

Query: 468 STSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELV 506
               +      E+                      +   ++     A+   + GTA ++V
Sbjct: 345 GVRDYLQRVVEEARAIGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIV 404

Query: 507 KKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
           K A       +       ++   + +     +  G          V  LV R       +
Sbjct: 405 KIAMLKVDAALTAGELSSRMLLQVHDEIVLEIAPGER------ERVEELVRREMAGAFQL 458

Query: 561 VLP 563
             P
Sbjct: 459 RAP 461



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 90/274 (32%), Gaps = 27/274 (9%)

Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +  IK  + G  I+         T   +   P  +    +   G+ +        G +  
Sbjct: 190 EGLIKTISPGGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESL 249

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T A +  ++L+  +   +     E +   E  H  +  Q         + G A   V  
Sbjct: 250 MT-ADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVASQ---------VFGVAKSEVDP 299

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             R K + +          F    Q G G+  ARR+ +         +  +  V+  +R 
Sbjct: 300 EMRRKIKAMSYGLAYGLSAFGLSGQLGIGADEARRLMDTFFERFGGVRDYLQRVVEEARA 359

Query: 568 LVYSDVK-GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620
           + Y++   G   YL   TS   + R    ++  N  +Q  + DI+   M           
Sbjct: 360 IGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTAGE 419

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
               ++L VHDEIV E        V  L    M 
Sbjct: 420 LSSRMLLQVHDEIVLEIAPGERERVEELVRREMA 453


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/530 (16%), Positives = 169/530 (31%), Gaps = 85/530 (16%)

Query: 61  LRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L D T     H++  F          +D         + LA     P    ++  AL   
Sbjct: 391 LADPTATKAVHDAKRFGLACRSHGWNLD----GVTSDTALAAYLVRPDLKSDSLEALATR 446

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               ++    A        ++D    D     A ++ A           ++         
Sbjct: 447 YLGRELNPRTAAAQ----PTLDGLETDGENEAAANLAALAAATRDLAEVLDGELASHNAA 502

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             L+D E  +  +   +   G   D+  +  L+   A E  +         D    + R 
Sbjct: 503 GLLADMELPVMTVLTEMEAIGITADVAHLTGLESTFAAEAAEAVAAAHAAVDQTF-NLRS 561

Query: 238 TYALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGS 287
              L+  LF   G+     ++            L +   H  +  + +     +L  + S
Sbjct: 562 PKQLQEILFDKLGMPKTKRTKTGYTTDADSLAGLYATTQHPVLEAILRHRDREKLKQTVS 621

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                  L   V+ DGR+  T Q   A+ TGR S      QN+P +              
Sbjct: 622 ------GLLAEVAEDGRIHTTYQQNVAA-TGRLSSKDPNLQNIPVRT------------- 661

Query: 348 NRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                       A   +R   I + G + L+  D + IE R++A ++G++  I+AF +GE
Sbjct: 662 -----------DAGRRIRQGFIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGE 710

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           D++ T  A+ FN     V  EQR   K M   L Y     G ++            ++++
Sbjct: 711 DLHTTVAARVFNVEPGSVDAEQRRRIKAMSYGLAYGLSAYGLSQQLGITPEEARGLMEEY 770

Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501
                    +      E+                      +   +D     A+   + G+
Sbjct: 771 FTRFGGVRDYLRTVVEEARKAGYTETMFGRRRYLPDLNSDNRQRRDMAERAALNAPIQGS 830

Query: 502 ACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545
           A +++K A    H+ ++      ++   + +     +  G +    ++  
Sbjct: 831 AADIMKIAMLNVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLVR 880



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 8/121 (6%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGG 595
              AR +           +  +  V+  +R+  Y++   G   YL    S   + R    
Sbjct: 760 PEEARGLMEEYFTRFGGVRDYLRTVVEEARKAGYTETMFGRRRYLPDLNSDNRQRRDMAE 819

Query: 596 KLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +   N  +Q  + DI+   M N  +          ++L VHDE+V E        V  L 
Sbjct: 820 RAALNAPIQGSAADIMKIAMLNVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLV 879

Query: 649 S 649
            
Sbjct: 880 R 880


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 105/543 (19%), Positives = 187/543 (34%), Gaps = 100/543 (18%)

Query: 12   SPQPLPKVGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-----DLLQYLRDET 65
                +   G+     E   I L   +  D+P  + D  +   +P+      L++ L  + 
Sbjct: 1059 CTLDIETTGLNHR--ED-RIRLLQISTPDQPSVVIDVFK-VPVPTLKECTWLVKLLGSQA 1114

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
            V  V HN  F+              K  I  +++A      +    +C            
Sbjct: 1115 V-KVLHNGKFDINFLSH---NGFNVKGPIFDTMIAAKLLSATRFNWSCKL---------- 1160

Query: 126  EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---------KR 176
              G             S  +  +       ++    Y  RD      L+         +R
Sbjct: 1161 --GHVAERYLNIVLDKSQQF--SDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLKAER 1216

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE---DIVKLTDGIIR 233
            L  ++D E    L    +   G ++DLD +  LQ  + +E +   +   D + ++     
Sbjct: 1217 LDMIADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHLGDTLGVSSNPNF 1276

Query: 234  SSRQTYALRMYLFLITGID------LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      +   L     +D      + D SE TL     H  I  L +    N+  ++ +
Sbjct: 1277 NYNSQRQILQALQQQKVMDKTRRGLIQDTSERTLSRNTYHPAIQALREYRKTNKAVTAFT 1336

Query: 288  AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                   +   + S  GR+   +   GA  +GR+S      Q +PR  R           
Sbjct: 1337 -----EKIPNHIDSATGRIYPNINQIGA-ESGRFSCDNPNLQQIPRDSR----------- 1379

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                              R C IA  G KLV+AD + IE R+ A IA +   I+A+ +GE
Sbjct: 1380 -----------------FRECFIADKGNKLVIADFSQIELRIAADIAEDRRMIEAYNSGE 1422

Query: 407  DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFSQN 465
            D++  T +   N PI +V+KE+R + K +   L +      F+  A    G+ L   +  
Sbjct: 1423 DLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYAESCYGVVLSVPAAR 1482

Query: 466  VKSTSTFEDWEQAESHHLWMQDQYP------------------EFAVKDKLIGTACELVK 507
                S F+ +    + H  M+   P                    ++   + GT+ ++ K
Sbjct: 1483 EIYDSFFKSYSGITAWHERMKAAKPISVRTLSNRLSVFDQFSFTRSLNYPVQGTSADITK 1542

Query: 508  KAW 510
            +A 
Sbjct: 1543 EAM 1545


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 124/386 (32%), Gaps = 77/386 (19%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L  +   +   G  ID+  + KL + +    + ++  + +L++     S    
Sbjct: 2   YEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELSEENFNLS-SPK 60

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294
            L   LF    +D     +           + +L  +  + +       + KL     + 
Sbjct: 61  QLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLTKLLSTYIDA 120

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L   ++   GR+        A+ TGR S      QN+P +                    
Sbjct: 121 LPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT------------------- 160

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                  S  +R   +     KL+ AD + IE R+LA +A E+  I AF   +DI+  T 
Sbjct: 161 -----EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSLTA 215

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKST 469
              F    + +S ++R +GK +   + Y  G K F              L ++ +     
Sbjct: 216 KLIFEK--EVISSDERRVGKTINFGVIYGMGIKKFARSTGVSIPEAKEFLIKYKERYSKI 273

Query: 470 STFEDWEQ---------------------------------------AESHHLWMQDQYP 490
             F + ++                                         +    M+ Q  
Sbjct: 274 FKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSL 333

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQG 516
             A    + G++ +++K A    ++ 
Sbjct: 334 RAAANAPIQGSSADIIKIAMVQLNKK 359


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 104/547 (19%), Positives = 186/547 (34%), Gaps = 90/547 (16%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGL-PS 107
             A  + L  +L D     + H+     +  ++  + +       +  S L   N L P 
Sbjct: 362 GEAGLAKLRPWLEDPKRYKLGHDCKASWVALRRKGVALAGIVGDTMIESFLVEPNKLIPH 421

Query: 108 SLKNACLA---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            L                  +  GK L       +    P+ CT+   V     F E  +
Sbjct: 422 RLDQLTKEYLQRTIPPQKRILGSGKRLKRFSQLDAEALAPWCCTQVEAVA--AAFVEIRE 479

Query: 165 R-DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           R D E  R+  +++ +PLS      W+L Q +   G  ID + + K+ E   +   KL++
Sbjct: 480 RLDAEGHRDTLEQVSLPLS------WVLGQ-MELDGVAIDSEDLGKMSEEFGERLAKLEK 532

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQ--L 273
            I ++       +     L   LF    + ++  ++         L+ +   +   +  +
Sbjct: 533 TIFEIAGREFNIASS-KQLGAVLFDELELPVIKRTKTGYSTNAEVLERLAGKTKHPKHTI 591

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           AK L+ +R   +       + L  AV+ D GR+  T Q   A  +GR        Q  P 
Sbjct: 592 AKYLLEHR-KLAKLINTYTDVLQAAVNPDSGRIHATFQ-QTAGVSGRLITTEPDLQRTPI 649

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +                              VR   +   G KL+ AD + IE R+LA  
Sbjct: 650 KT------------------------PEGKRVRQAFVTRPGYKLISADWSQIELRLLAHF 685

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQRAIGKVMELALGYQGGAKV--- 447
           + +   ++AFA G D++  T A+ F      +KVS+EQR +GK++  A  Y  GA     
Sbjct: 686 SSDAHLVEAFAKGLDVHARTAAQLFEVGGGPEKVSREQRGVGKLVNFATIYGQGATALGQ 745

Query: 448 -FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485
             K         +  +         + D   A++                     ++   
Sbjct: 746 ILKVPRKQAQAYIDGYFAYYSGVRDWLDGTMAQANVDGFVETLLGRRRYIPELSSNNWQD 805

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535
           +      A    + G+A ++ K A           +   + +LQ+  +L         E 
Sbjct: 806 RQAGERIAANTPIQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEVEA 865

Query: 536 GSISARR 542
                R 
Sbjct: 866 VVAIVRG 872


>gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
 gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
          Length = 883

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/536 (13%), Positives = 160/536 (29%), Gaps = 88/536 (16%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-------SS 108
            L + L D+ +     +     +  ++   +DI         +LA               
Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGV 419

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L N+              +GK    +          +  T+ + +   +           
Sbjct: 420 LANSYQESYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +  +++    + E  + ++   +   G ++    ++K++  +      L   I +L 
Sbjct: 471 -ELQQHEQVHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L + LF    +     ++     ++  +      + +  D++  R  S
Sbjct: 530 GEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQIS 588

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              +   +N L + + +DG++         + TGR S      QN+P             
Sbjct: 589 KIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------- 633

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +       L   D + +E RVLA ++ E   ++AF 
Sbjct: 634 -----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458
            G DI+  T  K F    +D+V+   R   K +   + Y     G AK            
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
           +  + +       +                            + +  ++      A+   
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           + G+A +++K A             K + +LQ+  +L         +   I   ++
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKI 858


>gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
 gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
          Length = 879

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 121/362 (33%), Gaps = 59/362 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  +  +   +   G  +    + ++     +  K L+  I  L       +     L
Sbjct: 480 DIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGSEFNIA-SPKQL 538

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296
            + LF   G+  +  ++    + +    + QL     +  L      I KLN+     L 
Sbjct: 539 GVVLFEDLGLPPIKKTKTGYSTAVE--VLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLV 596

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + ++ +G++    +   A +TGR S      QN+P +                       
Sbjct: 597 KDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTR----------------------- 632

Query: 357 LGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + AS  + ++  D + IE RVLA IA +   I AF +  DI+  T + 
Sbjct: 633 -IEEGKKIRKAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASD 691

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST-S 470
                +D+V+   R   K +   + Y     G +             + ++ +  K    
Sbjct: 692 VNGVSLDQVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDK 751

Query: 471 TFEDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW 510
              D  +    H +++  +                       A+   + GTA +++K A 
Sbjct: 752 YMTDIVEFAKEHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAM 811

Query: 511 RA 512
             
Sbjct: 812 VN 813



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654
           +Q  + DI+   M N       TK    ++L VHDE++ +            +  +M + 
Sbjct: 799 IQGTAADIIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTKEMIKIMEEA 858


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/464 (14%), Positives = 153/464 (32%), Gaps = 84/464 (18%)

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           LKN               E  + +        D+     T  + ++++       K  + 
Sbjct: 320 LKNIIKNHKIDTDQLVDFEIISWLT-----DPDTGTIKFTDKDTLESFFEKILQKKEFIL 374

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              + +      +  E  +  +   +   G  ++   + +  E I +      + I ++ 
Sbjct: 375 DRMDKYNLWELYNKVEHKIIHILSEMEQTGILLNSKQLKETDEKIKELLNNEKKAIDEML 434

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS---------HSNITQLAKD 276
              I +      L   LF    +     ++    T +  L           + +  + K 
Sbjct: 435 GEEI-NLNSPKQLSFVLFEKLKMVPFKKNKTGYSTDEDSLRNMIFLNPSYENLLKSILKY 493

Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              ++L S+ ++      LS+ +  S GR+    +  G + TGR S      QN+P++  
Sbjct: 494 REFSKLISTYTSK-----LSDYIDRSTGRIHTQFKQTG-TATGRLSSVNPNLQNIPQK-- 545

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                 G     +RS  ++  G   +  D + IE R+LA I+ +
Sbjct: 546 ----------------------GELGSEIRSAFVSKEGYSFLSIDYSQIELRILAHISDD 583

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
           +    AF    DI+  T  K F     +++++ R I K +   + Y     G ++     
Sbjct: 584 ENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAVNFGIIYGLSPYGLSRDVGIP 643

Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490
            S   + ++++ +   +   +                           +S +  ++ +  
Sbjct: 644 QSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTTILNRPRFIPDIKSANNTIKQRAE 703

Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524
             A+   + G+A +++K A               + +LQ+  +L
Sbjct: 704 RIAINSPIQGSAADIIKLAMIKSDKYLKRMQIDGKLILQVHDEL 747



 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 17/130 (13%)

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR---RLVYSDVKGDCSYLNTATSQ-LM 588
           Q    I  ++       V +  K  V            L       D    N    Q   
Sbjct: 644 QSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTTILNRPRFIPDIKSANNTIKQRAE 703

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATK--NGYDI----VLTVHDEIVSETPDTP-Y 641
           R            +Q  + DI+   M  + K      I    +L VHDE+V E  D    
Sbjct: 704 RIAINSP------IQGSAADIIKLAMIKSDKYLKRMQIDGKLILQVHDELVFEINDKYID 757

Query: 642 FSVGTLCSLM 651
            +   +  +M
Sbjct: 758 KTSKDIKVIM 767


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 155/493 (31%), Gaps = 87/493 (17%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNF 118
           L +     +  N  F+  + K+  G ++ S  +  T + A         SL     A   
Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH-GFNVISA-YFDTMIAAYVIDPNTKVSLDFLA-AKYL 465

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                K EE                P   T  +     ++   Y   D + T  LF  L 
Sbjct: 466 MHKNIKYEEI--------------VPQHSTLKDIPL--EIASNYAAEDADITFRLFNILR 509

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                      + + E     +   + + G  +D + + +    + QE K ++ ++++  
Sbjct: 510 KKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIENEVIQSI 569

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                +   +  L   LF    I +      + T   +L        + + ++N    + 
Sbjct: 570 GIEF-NLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLINYRQLAK 628

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344
                 + L E ++    ++         + TGR S      QN+P + ER         
Sbjct: 629 LKNTYTDNLIEFINEKTNKIHTNF-IQTKTATGRISSTAPNLQNIPIKNER--------- 678

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R+    + G   + AD + IE  +LA ++ ++  I+AF +
Sbjct: 679 ----------------GRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTH 722

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
            +DI++ T +K F      ++   R I K +   + Y+  A    +            + 
Sbjct: 723 KKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKREEAQNFID 782

Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499
            +        TF                         +  S +   +      A+   + 
Sbjct: 783 SYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAINSIIQ 842

Query: 500 GTACELVKKAWRA 512
           G+A +++K A   
Sbjct: 843 GSASDIMKIAMIK 855



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             +I+Q  + DI+   M               I+L VHDE++ E+P+        +   M
Sbjct: 837 INSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKAQIIIKEM 896

Query: 652 TKN 654
            +N
Sbjct: 897 MEN 899


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 134/390 (34%), Gaps = 65/390 (16%)

Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           L  RL  +    ER L  +   + + G  +D +++ +L +      + L+++I  L    
Sbjct: 439 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCT 498

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285
             +      L   LF   G+        +     +   +T+LA       D +L     S
Sbjct: 499 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 557

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 ++ L   V +  +   T     ++ TGR S      QN+P + +          
Sbjct: 558 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 607

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G KLV AD + +E +++A IAG      AF+ G
Sbjct: 608 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 653

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
           +DI++ T  + F   +     E R   K +   + Y       AK            + Q
Sbjct: 654 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 711

Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500
           + ++     ++ +  +A +                         ++      A+   + G
Sbjct: 712 YFRSYPEIKSYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 771

Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524
           TA ++VKKA             +LQ+  +L
Sbjct: 772 TAADVVKKAMINLRNKLEVGAIILQVHDEL 801



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612
           K  +  +   +R+  Y+    G   Y++   S+    R +  +   N  +Q  + D++ +
Sbjct: 720 KSYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 779

Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            M N         I+L VHDE++ E P++    V  +  LM
Sbjct: 780 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 817


>gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424]
 gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424]
          Length = 873

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 127/373 (34%), Gaps = 59/373 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  +  +   +   G  +    +  + + + +  K L+  I  L       +     L
Sbjct: 474 NIEVKVARVLANMEYEGIHVSKKALEDMSDELDERIKILEASIHTLAGSEFNIA-SPKQL 532

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296
            + LF   G+  V  ++    + +    + QL     +  L      + KLN+     L 
Sbjct: 533 GIVLFEDLGLPPVKKTKTGYSTSVE--VLEQLQHSHEIIPLIMEYRVLTKLNSTYAKGLV 590

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + ++  G++    +    ++TGR S      QN+P +                       
Sbjct: 591 KDITRKGKIHTRYE-QTLTQTGRLSSVNPNLQNIPTR----------------------- 626

Query: 357 LGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   I AS+ + ++  D + IE RVLA +A +   I AF +  DI+  T ++
Sbjct: 627 -IEEGKKIRKAFIPASDDRVILSIDYSQIELRVLAHMAQDKGMIDAFTHDLDIHTKTASE 685

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
                +D+V+   R   K +   + Y     G +             + ++ +     + 
Sbjct: 686 VNGVSLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFSGVNK 745

Query: 472 FE-DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW 510
           +  D  +    H +++  Y                       A+   + GTA +++K A 
Sbjct: 746 YMTDIVEFAKEHGYVETLYNRRRALPEINAKNKIVASLNARLAMNTPIQGTAADIIKLAM 805

Query: 511 RAKHQGVLQLWKD 523
                 + +   D
Sbjct: 806 INAFDYIEKTKVD 818



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT--PYFSVGTLCSLMTK 653
           +Q  + DI+   M NA      TK    ++L VHDE++ +        F++  +  +M +
Sbjct: 793 IQGTAADIIKLAMINAFDYIEKTKVDAKLLLQVHDELIFDVNKDVVDEFTI-EMVKIMEE 851

Query: 654 NPSWAKGLPLKAE 666
                  + LKAE
Sbjct: 852 AVE--LDVKLKAE 862


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 139/406 (34%), Gaps = 72/406 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSS 235
           L + E  L  L   +   G  +D+D +  L+E          E       + T G+  + 
Sbjct: 526 LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNL 585

Query: 236 RQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAIL---K 291
                L+  LF    +     ++ G    + S  ++ +  +   L  L +   A      
Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT 645

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E V+ D R+  T     A+ TGR S      QN+P +  +               
Sbjct: 646 VEGLLETVAPDDRIHTTYS-QTAAATGRLSSLHPNLQNIPVRTEA--------------- 689

Query: 352 TIADPLGLASDCVRSCIIA----SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                       +R   +A         L+ AD + IE R++A ++ ++  I+AF  GED
Sbjct: 690 ---------GRRIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGED 740

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++    ++ F    D+V+ EQRA  K M   L Y     G +K  K         ++ + 
Sbjct: 741 LHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF 800

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   +     A++                      +  ++D     A+   + G+A
Sbjct: 801 DRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSA 860

Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538
            +++K+A               + +LQ+  +L         E  + 
Sbjct: 861 ADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATA 906



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            AR +           +  +  V+  +R+  Y+  ++G   YL   +S   + R    + 
Sbjct: 791 EARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERA 850

Query: 598 TENI-VQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETPDTPYFSVGT-LCS 649
             N  +Q  + DI+   M +      ++G    ++L VHDE++ E P          L  
Sbjct: 851 ALNAPIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEE 910

Query: 650 LMTKN 654
            M + 
Sbjct: 911 RMGRA 915


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 144/435 (33%), Gaps = 74/435 (17%)

Query: 160 GEYCKRDVEATRELFK---RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           G  C+   E  R L +   +L  L++ E  L ++   +   G  +D   +  L E +   
Sbjct: 525 GRACRELSEHLRALLEADGQLGLLTELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHP 584

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSN 269
             +  E      D  + +   T  L+  +F   G+                +  ++   +
Sbjct: 585 IDQAFEQAQAQIDHEV-NLGSTKQLQAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVS 643

Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                   ++  +     + LK  +  L +A++ DGR+  T Q   A+ TGR S      
Sbjct: 644 PDTAGSRFLVALMNWREYSKLKQIVAGLRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNL 702

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-----KKLVVADLA 382
           QN+P +                              +R   +         + L+ AD +
Sbjct: 703 QNIPVRT------------------------EQGQRIRDVFVVGEDTQGPFECLMTADYS 738

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++G++  I+AF  GED++    ++ F+   + V+ + R+  K M   L Y 
Sbjct: 739 QIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSYGLVYG 798

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----------------- 481
               G ++            +  + +       F      E+                  
Sbjct: 799 LSSYGLSQQLHIGVDEARTMMSGYFERFGGVRDFLRGVVEEARSKGYTETIDGRRRYLPD 858

Query: 482 ----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------QGVLQLWKDLTEGFACV 531
               +   +      A+   + G+A +++KKA           Q   ++   + +     
Sbjct: 859 LTSDNRQARQAAERMALNAPIQGSAADIIKKAMIGVDRALRDGQLRSRVLLQVHDELIVE 918

Query: 532 VQEGGSISARRVANV 546
           V  G      R+   
Sbjct: 919 VAPGEREEVERILRT 933



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 9/160 (5%)

Query: 497 KLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           ++   A E V    R+K + +   L   L+          G   AR + +         +
Sbjct: 771 RVFDVAPEDVTPQMRSKVKAMSYGLVYGLSSYGLSQQLHIGVDEARTMMSGYFERFGGVR 830

Query: 556 RDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613
             +  V+  +R   Y++ + G   YL   TS   + R    ++  N  +Q  + DI+ + 
Sbjct: 831 DFLRGVVEEARSKGYTETIDGRRRYLPDLTSDNRQARQAAERMALNAPIQGSAADIIKKA 890

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           M    +          ++L VHDE++ E        V  +
Sbjct: 891 MIGVDRALRDGQLRSRVLLQVHDELIVEVAPGEREEVERI 930


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 112/559 (20%), Positives = 183/559 (32%), Gaps = 100/559 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIET    P            + I+L   A  + PV L +          L +++    
Sbjct: 71  LDIETTGLDPHT----------SEISLIQIAAPNRPVILIEF-RGITNKETLRRFIEHPK 119

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL--ALNFSEH 121
           +  V HN  FE     K LGI+     WI T ++++    GLP +L+       L   + 
Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDL 179

Query: 122 LTKMEEGKALIARFCKGSIDSP----------PYDCTRANHVQAW-----QLFGEYCKRD 166
              ++  K L     +    S            Y   ++  V  W     Q   +Y   D
Sbjct: 180 TRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239

Query: 167 VEATRELFK---------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                 L +         +L      E         +   G  +DLD   +L + I   R
Sbjct: 240 AAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299

Query: 218 KKLDEDIVK----------LTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           +   +   +          L  G    +      +   L    GI     S+ TL  +  
Sbjct: 300 EDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDTLDKLSE 358

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
           +         +I  R   S +       L   V+    R+   +    A+ +GR+S    
Sbjct: 359 NH---PEVFTIIEYR-HWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAA-SGRFSFSNP 413

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             Q +PR                                RSC + + G KL++AD + IE
Sbjct: 414 NLQQIPR----------------------------ERQYRSCFVPAPGYKLIIADYSQIE 445

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+ A IA +   I A+ N +D++  T A      ID+V+K++R +GK +   L Y  GA
Sbjct: 446 LRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGA 505

Query: 446 KVFKTMASHCGLDLQQFSQNVK-STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
              +  A         F +  +   + F+ +      H     +     VKD        
Sbjct: 506 TKLRIYAETNYGVSMTFDEAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKD-------- 557

Query: 505 LVKKAWRAKHQGVLQLWKD 523
                      G L+ WKD
Sbjct: 558 ------IRTLSGRLRRWKD 570


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/434 (14%), Positives = 141/434 (32%), Gaps = 79/434 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E+ L  + +T+++RG  ID   +  L+E       +   +   +    +  +    
Sbjct: 496 LDELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEVNLA-SPK 554

Query: 240 ALRMYLFLITGID---------------LVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            L++ LF    +                L D+ E        H  ++ L +   +++L  
Sbjct: 555 QLQVVLFETLALPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLSWLLRFREMSKL-- 612

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  L  L + V +  R+  T Q   A+ TGR +      QN+P +           
Sbjct: 613 ----TGYLVGLDKVVDAGSRVHTTFQ-QTAAATGRLASTEPNLQNIPVRT---------- 657

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +A  G + L+ AD + IE R++A ++ +   I+AF 
Sbjct: 658 --------------AEGQRIRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFN 703

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           +GED++    ++ F    D V    R+  K +   L Y     G ++  +   +      
Sbjct: 704 SGEDLHNFVASRVFGVSPDAVDPAMRSKTKAVSYGLAYGLSAFGLSRQLRISRAEATALR 763

Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498
             + +       +       +                      +   ++     A+   +
Sbjct: 764 DGYFERFGGVRDYLHHTVETARTTGYTETILGRRRYLPDLTSDNRQRRENAERVALNSPI 823

Query: 499 IGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
            G+A +++K A       +       ++   + +     V  G     R +         
Sbjct: 824 QGSAADIIKLAMLRVESRMRAAELSSRMLLQVHDELVVEVAAGELDQVREIVEEGMGSAY 883

Query: 553 RHKRDVHIVLPSSR 566
           +    + + +   R
Sbjct: 884 QLSVPLDVGVGIGR 897



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS-ISARRVANVPRLVMR 552
           V  ++ G + + V  A R+K + V          F    Q   S   A  + +       
Sbjct: 712 VASRVFGVSPDAVDPAMRSKTKAVSYGLAYGLSAFGLSRQLRISRAEATALRDGYFERFG 771

Query: 553 RHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610
             +  +H  + ++R   Y++ + G   YL   TS   + R    ++  N  +Q  + DI+
Sbjct: 772 GVRDYLHHTVETARTTGYTETILGRRRYLPDLTSDNRQRRENAERVALNSPIQGSAADII 831

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              M               ++L VHDE+V E        V  +  
Sbjct: 832 KLAMLRVESRMRAAELSSRMLLQVHDELVVEVAAGELDQVREIVE 876


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 128/407 (31%), Gaps = 74/407 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  +     ++   G  +D D++  L+    +   +      +     I  S    
Sbjct: 517 LHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAWEAAGEKINLS-SPK 575

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L+  LF    +     ++                  H  +  L +     +L  +    
Sbjct: 576 QLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLEHRDAIKLRQT---- 631

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L + +  DGR+  T     A+ TGR S      QN+P +                
Sbjct: 632 --VDGLLKEIRDDGRVHTTYMQTIAA-TGRLSSKDPNLQNIPMRT--------------- 673

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D 
Sbjct: 674 ---------EEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDF 724

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T +  F    + VS  QR+  K M   L Y     G +   K         +  +  
Sbjct: 725 HTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFS 784

Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503
                  + +    ++                          +D     A+   + G+A 
Sbjct: 785 RFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAA 844

Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVA 544
           +L+K A  A  Q         ++   + +     V +      R++ 
Sbjct: 845 DLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 891



 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +   + G    ++L VHDE++ E        V  + 
Sbjct: 839 IQGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 891


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/529 (17%), Positives = 166/529 (31%), Gaps = 86/529 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D       H + +     +   G           + LA     P   +     L+L +
Sbjct: 396 LADADQPKALHEAKWAMHALR---GRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRY 452

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                ++EE             D    +      + A  +       D     +  +   
Sbjct: 453 LRRELRVEE-TGEEQLSLLDDADQVDAEAAETEILSARAVLDLAAALD--TELDNIESTA 509

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            LS+ E  L  +   I   G  +D   +  LQ   A E     E    +    I +    
Sbjct: 510 LLSEMELPLLEVLADIEASGIAVDGTHLHDLQSRFAAEVSAAAEAAYGVIGKQI-NLGSP 568

Query: 239 YALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGSA 288
             L++ LF    +                L+++    SH  +  L       RL  +   
Sbjct: 569 KQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRLKVT--- 625

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++ L + V+ DGR+  T     A+ TGR S      QN+P +               
Sbjct: 626 ---VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-------------- 667

Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      A   +R   +   G   L+ AD + IE R++A ++G++  I+AF  GED
Sbjct: 668 ----------DAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 717

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++    A+AF  PI++V+ E R   K M   L Y     G A   K         ++ + 
Sbjct: 718 LHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAYF 777

Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502
                   +      ++                      +   ++     A+   + GTA
Sbjct: 778 ARFGGVRDYLHEVVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGTA 837

Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            +++K A             K + +LQ+  +L        +E      R
Sbjct: 838 ADIIKVAMINVQRSLRDAGLKSRMLLQVHDELVLEVVDSEREQVEQLVR 886


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 151/410 (36%), Gaps = 66/410 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            +EL   L    + E  L  +  ++  +G +ID     K    + ++   L+++I K   
Sbjct: 473 EKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAG 529

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284
               +      L   LFL   +     ++    T   +L + +    Q+A +L+  R   
Sbjct: 530 EEF-NINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYR-KL 587

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +      ++ + + V    R+       G + TGR S      QN+P             
Sbjct: 588 AKLKNTYVDPIPKMVKFGDRIHTCYHQIG-TVTGRLSSSDPNLQNIP------------- 633

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA +G KL+  D + +E RVLA ++ ++  +KA+  
Sbjct: 634 -----------VKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQE 682

Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            +D++  T  K F     ++VS+EQR + K++  ++ Y     G AK            +
Sbjct: 683 KQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYI 742

Query: 460 QQFSQNVKSTSTF--EDWEQAESH-------------------HLWMQDQYPEFAVKDKL 498
           +++ +     + F  E  E AE H                   +  +++Q    AV   +
Sbjct: 743 KRYFEQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVV 802

Query: 499 IGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543
            GTA E++KK     +  +L      L   + +     +QE       + 
Sbjct: 803 QGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKT 852


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/464 (16%), Positives = 150/464 (32%), Gaps = 83/464 (17%)

Query: 138 GSIDSPPYDCTRANHVQAWQLF---GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
            S+ S P +    ++++ +           R +    E   +L    + E  L  +   +
Sbjct: 535 PSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADM 594

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--------SSRQTYALRMYLF 246
              G  +   L+ +L +  +    +  E    +  G +         +      L+  LF
Sbjct: 595 EQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVATEDGEEPLNLASVKQLQTVLF 654

Query: 247 LITGIDLVDMSEGTLKSILSHSN-----ITQLAKDLILNRLASSGSAILKL----NTLSE 297
              G+      +    +           I+  +         ++    +KL      L +
Sbjct: 655 ETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFLGALAAYRDNIKLAQTVEGLQK 714

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           A + DGR+  T Q  GA+ TGR S      QN+P +                        
Sbjct: 715 AATEDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRT----------------------- 750

Query: 358 GLASDCVRSCIIAS-------NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                 +R   I +         + L+ AD + IE R++  +A ++  I A+  GED++ 
Sbjct: 751 -EEGRRIRGAFIVAPEPIDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHR 809

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
              ++ F    + V+ EQR+  K M   L Y     G AK     +   G     + +  
Sbjct: 810 YVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFKRF 869

Query: 467 KSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACEL 505
                F      ++H                         ++     A+   + GTA ++
Sbjct: 870 GRVGRFLRGVLKQAHQDGYTETIFGRRRVLPDLDSPNRVRREAAERAALNAPIQGTAADI 929

Query: 506 VKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRV 543
           +K A    H+ +       ++   + +     V  G   +A RV
Sbjct: 930 IKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERV 973



 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGT-LCSLMT 652
           +Q  + DI+   M    +   + G    +   VHDEI+ E       +    L   M+
Sbjct: 922 IQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMS 979


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 132/377 (35%), Gaps = 63/377 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E    +    +   G  +D   + +L E+   E  ++++   +     + + +   
Sbjct: 550 LRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDESNRMEQICYEAAGHEV-NLQSPK 608

Query: 240 ALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRL--ASSGSAILKL- 292
            L + LF   G++    ++     T    L+    T          L        + KL 
Sbjct: 609 QLGVVLFEEMGLNPTKKTKRGSYSTNAKALTTLYATSEEGSRPNEFLGALLRHREVNKLR 668

Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               TL +A++  DGR+  T     A+ TGR S      QN+P +               
Sbjct: 669 QIVQTLIDAINPRDGRIHTTFTQTVAA-TGRLSSVDPNLQNIPNR--------------- 712

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +RS  +   G   L+ AD + +E R++A ++G++  IKAF +G D
Sbjct: 713 ---------NATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGAD 763

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+D+V+ +QR   K M   L Y     G ++     +        ++ 
Sbjct: 764 FHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYGLSTYGLSQQLGIPSKEAAALRSRYF 823

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           Q       + +                     +    S +   +D     A+   + GTA
Sbjct: 824 QTFGKVHDYLESLVSNARNTGYTQTMFGRRRYFPALTSANRVARDAAERGALNAPIQGTA 883

Query: 503 CELVKKAWRAKHQGVLQ 519
            +++K A     + +  
Sbjct: 884 ADIMKIAMIRVDRALRD 900



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    +          IVL +HDE+V E        V  L  
Sbjct: 879 IQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKRVTELVR 932


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 83/516 (16%), Positives = 171/516 (33%), Gaps = 77/516 (14%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
             D      D   Q A   ++L   LRD     V H         K      +  +  + 
Sbjct: 411 VRDGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFK---AALKALTSRGLELEGVVD 467

Query: 96  TSVLARTNGLP-------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            + ++     P       + L    L +   +   K  +   L   F          D  
Sbjct: 468 DTSISGYLIQPDRRTYELAELAQHHLNVGIPQATAKAGQ---LELSFDGE-------DEA 517

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            A+ +       +   R  E   +  +    LS  E  +  +   +   G  ID+  +  
Sbjct: 518 AADALVQSAAVVQALSRYFEGELKERRAEELLSTLELPVSRVLADMELAGIGIDMARMDD 577

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--TLKSILS 266
               +A+   +  E         + +      L+  LF    +      +   T  +   
Sbjct: 578 QLADLARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASL 636

Query: 267 HSNITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            + + +   + ++  +A   +A L+  L +L ++V+ DGR+  T     A+ TGR S   
Sbjct: 637 KNLLEKTGHEFLVQLMAHREAAKLRQMLESLKKSVAEDGRIHTTYAQNVAA-TGRISSNN 695

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAG 383
              QN+P +                              VR   +   G + L+ AD + 
Sbjct: 696 PNLQNIPIRS------------------------EEGRRVRGIFVVGEGYECLLSADYSQ 731

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R++A ++G+   I+A+ +GED++    +  F+ P ++V+   R+  K M   L Y  
Sbjct: 732 IEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAMRSKVKAMSYGLAYGL 791

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481
              G +K  +         ++++     +   +      ++                   
Sbjct: 792 TSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQARVDGYTATIEGRRRYLPDL 851

Query: 482 ---HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                 +++     A+   + G+A +++K+A    H
Sbjct: 852 TSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVH 887



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 90/282 (31%), Gaps = 39/282 (13%)

Query: 396 DWKIKAFANGEDIYVTTYAKAF-------------NTPIDKVSKEQRAIGKVMELALGYQ 442
           +   K+ A    I+ T                   N PI   S+E R +  +  +  GY+
Sbjct: 665 ESLKKSVAEDGRIHTTYAQNVAATGRISSNNPNLQNIPIR--SEEGRRVRGIFVVGEGYE 722

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                  +      ++++  +         + ++  E  H +         V   +    
Sbjct: 723 CLLSADYS-----QIEMRIMAHLSGDQGLIQAYKDGEDLHRF---------VGSNIFHVP 768

Query: 503 CELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            E V  A R+K + +   L   LT        E     AR +           +  +  V
Sbjct: 769 AEEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGV 828

Query: 562 LPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK 619
           +  +R   Y + ++G   YL   TS   + R    ++  N  +Q  + DI+   M     
Sbjct: 829 VDQARVDGYTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVHA 888

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
                     ++L VHDE+V E       +V  L    M   
Sbjct: 889 ELKAQGLASRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAA 930


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 133/390 (34%), Gaps = 65/390 (16%)

Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           L  RL  +    ER L  +   + + G  +D +++ +L +      + L+++I  L    
Sbjct: 442 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCK 501

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285
             +      L   LF   G+        +     +   +T+LA       D +L     S
Sbjct: 502 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 560

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 ++ L   V +  +   T     ++ TGR S      QN+P + +          
Sbjct: 561 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 610

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G KLV AD + +E +++A IAG      AF+ G
Sbjct: 611 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 656

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
           +DI++ T  + F   +     E R   K +   + Y       AK            + Q
Sbjct: 657 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 714

Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500
           + ++      + +  +A +                         ++      A+   + G
Sbjct: 715 YFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 774

Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524
           TA ++VKKA             +LQ+  +L
Sbjct: 775 TAADVVKKAMINLRNKLEVGAIILQVHDEL 804



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612
           K  +  +   +R+  Y+    G   Y++   S+    R +  +   N  +Q  + D++ +
Sbjct: 723 KNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 782

Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            M N         I+L VHDE++ E P++    V  +  LM
Sbjct: 783 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 820


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 133/390 (34%), Gaps = 65/390 (16%)

Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           L  RL  +    ER L  +   + + G  +D +++ +L +      + L+++I  L    
Sbjct: 453 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCT 512

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285
             +      L   LF   G+        +     +   +T+LA       D +L     S
Sbjct: 513 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 571

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 ++ L   V +  +   T     ++ TGR S      QN+P + +          
Sbjct: 572 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 621

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G KLV AD + +E +++A IAG      AF+ G
Sbjct: 622 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 667

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
           +DI++ T  + F   +     E R   K +   + Y       AK            + Q
Sbjct: 668 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 725

Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500
           + ++      + +  +A +                         ++      A+   + G
Sbjct: 726 YFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 785

Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524
           TA ++VKKA             +LQ+  +L
Sbjct: 786 TAADVVKKAMINLRNKLEVGAIILQVHDEL 815



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612
           K  +  +   +R+  Y+    G   Y++   S+    R +  +   N  +Q  + D++ +
Sbjct: 734 KNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 793

Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            M N         I+L VHDE++ E P++    V  +  LM
Sbjct: 794 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 831


>gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 180

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 19/189 (10%)

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             L     + +  +WR  +  +   W D+       + +      R +            
Sbjct: 1   MGLSEEELQPLVNSWRNSNPMITAFWWDIDRAVKTTITQRIQTEVRGI------CFFYKS 54

Query: 556 RDVHIVLPSSRRLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAIS 606
             + I LPS R L Y   + G+  Y           +T +  R  +YG K  ENIVQA+S
Sbjct: 55  GMLFIKLPSGRLLSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVS 114

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RDILC  MK  T     IV  VHDE++ E       +V  +C  M ++P W   + L+A+
Sbjct: 115 RDILCYAMK--TLRHCFIVGHVHDELIIECSPDVDTNV--ICKQMGRSPDWMPDILLRAD 170

Query: 667 GYEAKRYRK 675
           GYE   Y+K
Sbjct: 171 GYETNFYKK 179


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 133/390 (34%), Gaps = 65/390 (16%)

Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           L  RL  +    ER L  +   + + G  +D +++ +L +      + L+++I  L    
Sbjct: 453 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCK 512

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285
             +      L   LF   G+        +     +   +T+LA       D +L     S
Sbjct: 513 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 571

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 ++ L   V +  +   T     ++ TGR S      QN+P + +          
Sbjct: 572 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 621

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G KLV AD + +E +++A IAG      AF+ G
Sbjct: 622 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 667

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461
           +DI++ T  + F   +     E R   K +   + Y       AK            + Q
Sbjct: 668 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 725

Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500
           + ++      + +  +A +                         ++      A+   + G
Sbjct: 726 YFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 785

Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524
           TA ++VKKA             +LQ+  +L
Sbjct: 786 TAADVVKKAMINLRNKLEVGAIILQVHDEL 815



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612
           K  +  +   +R+  Y+    G   Y++   S+    R +  +   N  +Q  + D++ +
Sbjct: 734 KNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 793

Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            M N         I+L VHDE++ E P++    V  +  LM
Sbjct: 794 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 831


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 155/493 (31%), Gaps = 87/493 (17%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNF 118
           L +     +  N  F+  + K+  G ++ S  +  T + A         SL     A   
Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH-GFNVISA-YFDTMIAAYVIDPNTKVSLDFLA-AKYL 465

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                K EE                P   T  +     ++   Y   D + T  LF  L 
Sbjct: 466 MHKNIKYEEI--------------VPQHSTLKDIPL--EIASNYAAEDADITFRLFNILR 509

Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                      + + E     +   I + G  +D + + +    + QE K ++ ++++  
Sbjct: 510 KKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIENEVIQSI 569

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                +   +  L   LF    I +      + T   +L        + + ++N    + 
Sbjct: 570 GIEF-NLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLINYRQLAK 628

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344
                 + L E ++    ++         + TGR S      QN+P + ER         
Sbjct: 629 LKNTYTDNLIEFINEKTNKIHTNF-MQTKTATGRISSTAPNLQNIPIKNER--------- 678

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R+    + G   + AD + IE  +LA ++ ++  I+AF +
Sbjct: 679 ----------------GRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTH 722

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
            +DI++ T +K F      ++   R I K +   + Y+  A    +            + 
Sbjct: 723 KKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKRDEAQNFID 782

Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499
            +        TF                         +  S +   +      A+   + 
Sbjct: 783 SYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAINSIIQ 842

Query: 500 GTACELVKKAWRA 512
           G+A +++K A   
Sbjct: 843 GSASDIMKIAMIK 855



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             +I+Q  + DI+   M               I+L VHDE++ E+P+        +   M
Sbjct: 837 INSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKAQIIIKEM 896

Query: 652 TKN 654
            +N
Sbjct: 897 MEN 899


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 88/517 (17%), Positives = 174/517 (33%), Gaps = 99/517 (19%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D  + + +  +L   L    V+ + HN    R +F   +   + S   +     +   G 
Sbjct: 342 DSIQDALIIINLT--LLSNGVLKIIHNIKEIRKIFP-AIEKMLDSVDDLMIMSYSLDTGK 398

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                   +A N SE+  ++   K LIA                 +     +LF      
Sbjct: 399 HDHSIPNIVAHNLSEN-AEIFSAKTLIA----------------IHEKLKQRLFQ----- 436

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E    +++R       ++ L  +   +   G  +++  + +L +   Q    L+++I 
Sbjct: 437 --EKLLTIYERF------DKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIY 488

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279
            L       +     L   LF   G++    S+ +     ++  +  L ++       IL
Sbjct: 489 NLAGERFNIA-SPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKIL 547

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N    S       + L + V   DGR+  +      +  GR S      QN+P +     
Sbjct: 548 NWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATAT-GRLSSSNPNLQNIPIRS---- 602

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  + +R   IA  G K++ AD + IE R+LA +A     
Sbjct: 603 --------------------EEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 642

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            +AFANG+DI+  T  + F     ++ ++ R   K +   + Y     G AK      + 
Sbjct: 643 KEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493
               +  +         + +   + +                        +++      A
Sbjct: 701 AAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAA 760

Query: 494 VKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524
           +   L GTA +++K+A           + +LQ+  +L
Sbjct: 761 INAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDEL 797



 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPS 656
           Q  + DI+               I+L VHDE++ E  D     +   +  +M     
Sbjct: 766 QGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE 822


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 128/407 (31%), Gaps = 74/407 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  +     ++   G  +D D++  L+    +   +      +     I  S    
Sbjct: 489 LHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAWEAAGEKINLS-SPK 547

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L+  LF    +     ++                  H  +  L +     +L  +    
Sbjct: 548 QLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLEHRDAIKLRQT---- 603

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L + +  DGR+  T     A+ TGR S      QN+P +                
Sbjct: 604 --VDGLLKEIRDDGRVHTTYMQTIAA-TGRLSSKDPNLQNIPMRT--------------- 645

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D 
Sbjct: 646 ---------EEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDF 696

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T +  F    + VS  QR+  K M   L Y     G +   K         +  +  
Sbjct: 697 HTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFS 756

Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503
                  + +    ++                          +D     A+   + G+A 
Sbjct: 757 RFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAA 816

Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVA 544
           +L+K A  A  Q         ++   + +     V +      R++ 
Sbjct: 817 DLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 863



 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +   + G    ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 863


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 128/407 (31%), Gaps = 74/407 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  +     ++   G  +D D++  L+    +   +      +     I  S    
Sbjct: 480 LHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAWEAAGEKINLS-SPK 538

Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289
            L+  LF    +     ++                  H  +  L +     +L  +    
Sbjct: 539 QLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLEHRDAIKLRQT---- 594

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L + +  DGR+  T     A+ TGR S      QN+P +                
Sbjct: 595 --VDGLLKEIRDDGRVHTTYMQTIAA-TGRLSSKDPNLQNIPMRT--------------- 636

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +   G + L+ AD + IE R++A ++G+   I AF +G+D 
Sbjct: 637 ---------EEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDF 687

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +  T +  F    + VS  QR+  K M   L Y     G +   K         +  +  
Sbjct: 688 HTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFS 747

Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503
                  + +    ++                          +D     A+   + G+A 
Sbjct: 748 RFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAA 807

Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVA 544
           +L+K A  A  Q         ++   + +     V +      R++ 
Sbjct: 808 DLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 854



 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +   + G    ++L VHDE++ E        V  + 
Sbjct: 802 IQGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 854


>gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
 gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
          Length = 512

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 127/396 (32%), Gaps = 68/396 (17%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L  
Sbjct: 100 ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG 159

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285
               +      L + LF    +     ++     ++  +      + +  D++  R  S 
Sbjct: 160 EKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISK 218

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
             +   +N L + + +DG++         + TGR S      QN+P              
Sbjct: 219 IQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP-------------- 262

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +       L   D + +E RVLA ++ E   ++AF  
Sbjct: 263 ----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKE 312

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+  T  K F    +D+V+   R   K +   + Y     G AK            +
Sbjct: 313 GYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFI 372

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
             + +       +                            + +  ++      A+   +
Sbjct: 373 NNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPI 432

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524
            G+A +++K A             K + +LQ+  +L
Sbjct: 433 QGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 468


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/496 (15%), Positives = 155/496 (31%), Gaps = 80/496 (16%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                        +  +EG A I +  K        +      +  + L+G+      EA
Sbjct: 393 DGKIAYYLLHPDKSSSKEGLAEIKKMLKSE------EGLDKEALSLFDLYGKISSEMDEA 446

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L  R+      +  L ++   +  +G R+DLD + K+++ + +    +   I     
Sbjct: 447 LHGLMYRI------DIPLSVVLSRMERKGIRLDLDHLWKVKQELERTLDDVKASIDMAAG 500

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNRL 282
             + +      +   LF   G+ ++  ++         L+ +        L   L+L+  
Sbjct: 501 YKV-NLNSPKQVGWLLFDHLGLPVIKKTKTGYSTDVTVLEELSRLDRPEALVAKLLLDHR 559

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +      +  L +A+    G++  T + + ++ TGR S      QNLP          
Sbjct: 560 ELTKMLTGFVQPLIDAIDPKTGKVHTTFE-HTSTGTGRLSSRDPNLQNLP---------- 608

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                           G  +  ++   +        + AD + IE RVLA I+G+    +
Sbjct: 609 --------------AYGDWAMKLKEAFVPDRRDGIFIAADYSQIELRVLAHISGDKKLCE 654

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           AF  G DI+  T A  F    +KVS E R + K++   L Y     G A           
Sbjct: 655 AFERGRDIHAETAAWIFGVDTEKVSPELRRMAKMINFGLLYGMTPYGLASRLNIGREEAK 714

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495
             + ++         + +    E+                                 A+ 
Sbjct: 715 TIIDRYFSAFPKVGDYIEKSYEEARKRGYTLSLFGRRRPLNEVTTVVGNSTAALKRVAIN 774

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +  TA ++ K A     + + +  +++       + +        +            
Sbjct: 775 TPIQSTAADITKIAMIRLDEALQR--ENIDAALILQIHDSL------ICECSAKDEEVVS 826

Query: 556 RDVHIVLPSSRRLVYS 571
             +   + S+  L   
Sbjct: 827 GILKESMESAVELSVP 842


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/708 (16%), Positives = 223/708 (31%), Gaps = 118/708 (16%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQY 60
           +D ET         +  V ++   E+ +     +       KL D      +P   + +Y
Sbjct: 81  LDTETTGLNVVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKD-----QLPLDVVKKY 135

Query: 61  LRDETVMCVAH-NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           +       +   N+ F+  +    +GI+     W   + LA      +  +   L   + 
Sbjct: 136 IMQLENTKLDFSNAHFDLQVLYWQMGINNIKAYW--DTQLAANLLNEN--EPHGLKYLYE 191

Query: 120 EHLTKMEEGKALIARFCK----GSIDSPP---------YDCTRANHVQAWQLFGEYCKRD 166
           +++ K +     +A F            P          D   +  +  +Q         
Sbjct: 192 KYVKKEDTNSKQLATFGTLFRGIPFTKIPLDIAYLYAGKDPKMSYELAEFQRKYLNNTDA 251

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV- 225
               R L      + D E         +  +G ++DLDL  KL     Q++ +++E +  
Sbjct: 252 DVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYRQKKAEVEEKLKI 311

Query: 226 -------KLTDGIIRSS------------RQTYALRMYLFLITGIDLVDMSE--GTLKSI 264
                  +  +  I+                   L ++ + + G+  VD  +  GT   I
Sbjct: 312 EFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLGIFFYDMLGLKPVDREKPRGTGADI 371

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           L   ++      LIL            ++ L   +S   G++  T   YG + TGR+S  
Sbjct: 372 LGKFDVP--VAKLILEYRELDKLLGTYIDKLPTVLSKRTGKIHCTFNQYG-TVTGRFSSD 428

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P   +                            +R   I  +G  L+  D + 
Sbjct: 429 SPNLQNIPSHNKD---------------------------IRKMFIPDDGNILIGGDYSQ 461

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK------------VSKEQRAI 431
            E R LA ++G++  IKA+ NG+DIY T  +  +  P ++            + K++R+ 
Sbjct: 462 QEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNPDGTTNTIGKQRRSN 521

Query: 432 GKVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            K + L + Y  G                  + +F         F +     +  L    
Sbjct: 522 LKGVVLGIIYGRGVNSIAEKLNLTKKEAQSIIDEFFTLFPKVKQFTEDSIRMARELGYVT 581

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                  +   I       K   ++        +    +     V E   +S   +    
Sbjct: 582 TLSGRRRRLPDINLPRYEFKYKDKSTSDNFNPFFDTADDVENDEVPEYVQLSYTAMLEKS 641

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
           R   +R    +     S  R     +K +   +  A  Q             + +Q  + 
Sbjct: 642 RFDKKRKNVIL-----SKARTEGISIKNNTGLIAQAERQ----------CVNSRIQGSAA 686

Query: 608 DILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           D+    M      K   + GY +++ VHDEI+ + P      V  +  
Sbjct: 687 DMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPILE 734


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 135/394 (34%), Gaps = 82/394 (20%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L      +   G  +D D +  L+   A +  +   D     D    +      L
Sbjct: 497 DLELPLARHLVAMEATGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQL 556

Query: 242 RMYLFLITGIDLVD---------------MSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +  LF   G+                   +     +   + + +  L +   + RL S+ 
Sbjct: 557 QEVLFERLGLPKTKKTKTGYTTDADALVWLRAQASEGSTAETFLEALLRHRDVTRLRST- 615

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                +  L +AV +DGR+  T Q   A+ TGR S      QN+P +  +          
Sbjct: 616 -----VQGLQKAVDADGRIHTTYQQTIAA-TGRLSSVDPNLQNIPIRTEA---------- 659

Query: 347 LNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   +  +G   L+ AD + IE R++A ++G++  I+AF  G
Sbjct: 660 --------------GRRIREVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAG 705

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
           ED++    +K F    ++V+ E RA  K M   L Y     G +K      +     + +
Sbjct: 706 EDLHRYVGSKVFQVAPEEVTAEMRAKVKAMSYGLAYGLSSFGLSKQLGITPAEASALMDE 765

Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500
           +         +      E+                      +   ++     A+   + G
Sbjct: 766 YFARFGGVRDYLRAVVDEARRTGYTETMLGRRRPLPDLASTNRQRREMAERMALNAPIQG 825

Query: 501 TACELVKKAW----------RAKHQGVLQLWKDL 524
           +A +++K A           R   + +LQ+  +L
Sbjct: 826 SAADVMKLAMLKVEDALDAQRLASRVLLQVHDEL 859


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 179/539 (33%), Gaps = 91/539 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LFID ET   +               I L     D+E + + D  +       L + +  
Sbjct: 25  LFIDTETTGDR---------------IRLFQVG-DEERIFVIDLFDLPEAVDVLKELIAK 68

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           + V  V HN  F+    K    + I       T + +   G      +          + 
Sbjct: 69  KGV--VGHNLKFD---LKFMYPLGIVPYATFDTMIGSFLLGYERHSLSHVAERLLGYTMD 123

Query: 124 KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--------TRELF 174
           K  +          K  I+    D      +            + +         T  +F
Sbjct: 124 KSLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETDRGEELLRTRTARVF 183

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
               P +  E         +   G  +D + + +L     ++ +KL  D           
Sbjct: 184 GLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYEKKLQKLIMDFYIKYRID--- 240

Query: 235 SRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 +  +L    G++L +  +G   T    L+  +  +  +D++  R      A+ K
Sbjct: 241 PMSPKQIGSFLTGRLGLELPETQKGNISTDDKTLAEFSHVKEVRDILEIRRI--KKALDK 298

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  L   +  +GR+    +  GA  TGR S      QN+PR                   
Sbjct: 299 LKELKGFI-RNGRVYPEFRQIGAV-TGRMSSSNPNVQNIPRD------------------ 338

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +RS   AS G   V+AD + IE R+ A    ++  ++AF  G D++  
Sbjct: 339 ------------MRSLFRASEGNLFVIADFSQIELRIAAEYVQDENMLRAFREGRDLHRY 386

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTS 470
           T +     P ++++KE+R + K M   L Y   A+     A S  G++L+  + +V    
Sbjct: 387 TASLVLEKPEEEITKEERQLAKAMNFGLIYGISARGLSEYARSSYGVELEIEAADVFRQK 446

Query: 471 TFEDWEQAESHHLWMQDQYPEF--------------------AVKDKLIGTACELVKKA 509
            F+ +   +  H  ++ +  E                     AV   + GT  +L+K A
Sbjct: 447 FFKFFHAFKDWHDSVKRELKENKEVVGTTLLGRPYRASTFTDAVNYPIQGTGADLLKLA 505


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 119/313 (38%), Gaps = 62/313 (19%)

Query: 261 LKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           ++ +     + + L +   L++L S+ +     + L + V+S  GR+  +      + TG
Sbjct: 1   MEELSYSHELPKILVEHRGLSKLKSTYT-----DKLPQMVNSQTGRVHTSY-HQAVTATG 54

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P +                              +R   IA  G  +V 
Sbjct: 55  RLSSSDPNLQNIPIR------------------------NEEGRRIRQAFIAREGYSIVA 90

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   
Sbjct: 91  ADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFG 150

Query: 439 LGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------- 475
           L Y                 A+ +  +       +QQF  ++++ +  + +         
Sbjct: 151 LIYGMSAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL 210

Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGF 528
                 S +   +      A+   + GTA +++K+A     + +      ++   + +  
Sbjct: 211 YLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDEL 270

Query: 529 ACVVQEGGSISAR 541
              V+       R
Sbjct: 271 VFEVRSEKVAFFR 283


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/580 (16%), Positives = 174/580 (30%), Gaps = 99/580 (17%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHN 72
             +   G  A  +   I L A          +D  + +      L   L D T   V H 
Sbjct: 345 VDVAGRGTPAQGDAWGIALAA----GGQGVAYDLADITPDDEQALATWLADPTAPKVLHG 400

Query: 73  SLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEE 127
           +         + +G+D      +  + LA     P      L +        E     ++
Sbjct: 401 AKTAWHALAARGIGLD----GVVFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDDD 456

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
            +  +     G+      + TRA  V            D          L  L+D E  L
Sbjct: 457 AQGALDLDLGGAGTQGVREATRAAAVADLAQALAGQLDD-----RGAASL--LTDVELPL 509

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G   D   +  L+   A +  +   +        + +      L+  LF 
Sbjct: 510 SAVLARVEATGIATDTAYLTGLERGFADQVAQAAAEAYDAIGHEV-NLGSPKQLQEVLFG 568

Query: 248 ITGIDLVDM-------SEGTLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              +                L  + +   H  +  L       +L  +      +  L +
Sbjct: 569 ELDMPKTKKTKTGYTTDAAALAELYAKTGHPFLEHLLAHRDAAKLRVT------VEGLLK 622

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +V  DGR+  T Q   A+ TGR S      QN+P +  +                     
Sbjct: 623 SVHPDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRTEA--------------------- 660

Query: 358 GLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R       G + L+ AD + IE R++A ++G++  I+AF  GED++    ++ 
Sbjct: 661 ---GRQIRRAFRVGEGFESLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRV 717

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           F      V+ E R+  K M   L Y     G ++            +  +         +
Sbjct: 718 FGVEPAGVTAEMRSKVKAMSYGLAYGLSAFGLSQQLGIATGEAQGLMDDYFARFGGVREY 777

Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            D    E+                      +   +      A+   + G+A +++K A  
Sbjct: 778 LDGVVEEARATGYTATVLGRRRYLPDLTSDNRQRRQMAERMALNAPIQGSAADIIKLAML 837

Query: 512 A----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                      + + +LQ+  +L    A   +E      R
Sbjct: 838 GVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLR 877



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654
           +Q  + DI+   M          G    ++L VHDE+V E  P     +   L + M   
Sbjct: 824 IQGSAADIIKLAMLGVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGAA 883


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/527 (14%), Positives = 172/527 (32%), Gaps = 81/527 (15%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS- 108
             A  + L Q+L D     + H++     L        +        ++++     P   
Sbjct: 346 DEAAENVLAQFLADAAAPKIFHDAKATMHLLAD---RGLKLAGIHDDTLISAYLIQPDRR 402

Query: 109 ----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               +      L ++  + + ++G+  +       +  P     +A H  +  L  +  +
Sbjct: 403 SHDLVDVVQYHLKYAVPVHQAKKGELDLGL--TADLAEPALAQAQAIHDLSAFLATKLAE 460

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +             + E  L  +   +   G  +D+D + +L+    ++  +   D 
Sbjct: 461 KHADKLAA---------EMELPLIPVLFEMERAGVAVDVDRLNELRAHFTEQVDQATNDA 511

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                  +  S     L++ LF    +      +    +         +           
Sbjct: 512 FAAIGHEVNLS-SPKQLQVVLFEELDLPRTKKIKTGFTTDAESLADLLVKTGHPFLVALM 570

Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +    +KL    + L +A   DGR+  T     A+ TGR S      QN+P +       
Sbjct: 571 AYRDAIKLRQTVDGLLKATHEDGRIHTTYAQTVAA-TGRLSSLNPNLQNIPVRS------ 623

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G + L+  D + IE R++A ++ ++  I
Sbjct: 624 ------------------EEGRRIRDVFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLI 665

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +A+ NGED++    ++ FN   ++V+ E R+  K M   L Y     G +K  K      
Sbjct: 666 EAYQNGEDLHRYVGSRVFNVEPEEVTSEMRSKVKAMSYGLAYGLSSFGLSKQLKIGVDEA 725

Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494
              ++ +     +  T+                         +  S    ++D     A+
Sbjct: 726 RKLMKDYFDRFGAVRTYLRSVVDQARKDGYTETIFGRRRYLPELNSSDRRLRDIAERAAL 785

Query: 495 KDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535
              + G+A +LVK A     + +       ++   + +     + EG
Sbjct: 786 NAPIQGSAADLVKVAMLRIDEELKAGEYKSRMLLQVHDELILEIAEG 832



 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 97/282 (34%), Gaps = 39/282 (13%)

Query: 396 DWKIKAFANGEDIYVTTYAKAF-------------NTPIDKVSKEQRAIGKVMELALGYQ 442
           D  +KA      I+ T                   N P+   S+E R I  V  +  GYQ
Sbjct: 583 DGLLKATHEDGRIHTTYAQTVAATGRLSSLNPNLQNIPVR--SEEGRRIRDVFMVGEGYQ 640

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
               V  +      ++++  +   +     E ++  E  H +         V  ++    
Sbjct: 641 SLLTVDYS-----QIEMRIMAHLSEDEGLIEAYQNGEDLHRY---------VGSRVFNVE 686

Query: 503 CELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            E V    R+K + +   L   L+        + G   AR++           +  +  V
Sbjct: 687 PEEVTSEMRSKVKAMSYGLAYGLSSFGLSKQLKIGVDEARKLMKDYFDRFGAVRTYLRSV 746

Query: 562 LPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT- 618
           +  +R+  Y++ + G   YL    S   R R    +   N  +Q  + D++   M     
Sbjct: 747 VDQARKDGYTETIFGRRRYLPELNSSDRRLRDIAERAALNAPIQGSAADLVKVAMLRIDE 806

Query: 619 --KNGY---DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
             K G     ++L VHDE++ E  +     V  L +  M + 
Sbjct: 807 ELKAGEYKSRMLLQVHDELILEIAEGELEPVQELVTREMGQA 848


>gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
 gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
          Length = 439

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 130/415 (31%), Gaps = 68/415 (16%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L  
Sbjct: 27  ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG 86

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285
               +      L + LF    +     ++     ++  +      + +  D++  R  S 
Sbjct: 87  EKF-NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISK 145

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
             +   +N L + + +DG++         + TGR S      QN+P              
Sbjct: 146 IQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP-------------- 189

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +       L   D + +E RVLA ++ E   ++AF  
Sbjct: 190 ----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKE 239

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
           G DI+  T  K F    +D+V+   R   K +   + Y     G AK            +
Sbjct: 240 GYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFI 299

Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498
             + +       +                            + +  ++      A+   +
Sbjct: 300 NNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPI 359

Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            G+A +++K A             K + +LQ+  +L         +       ++
Sbjct: 360 QGSAADIIKIAMIKMQSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 414


>gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 908

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/532 (15%), Positives = 171/532 (32%), Gaps = 94/532 (17%)

Query: 46  DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D T +  +  D           + +  + H+   ER ++  + G+ + +  +    + + 
Sbjct: 372 DLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNIYSMS-GVGLNNI-YFDIMLASY 429

Query: 102 TNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAW 156
                 S      +   L+F+  +       +  + F   SI++        +      +
Sbjct: 430 CLNPAKSHCITDMSKEYLDFTAGVGSYAWKGSKKSSFANSSIEAGAKYANSISAAVFAIY 489

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           ++F    K      ++L        D E  L  +   +   G ++DL  +    E I  E
Sbjct: 490 KIFDFQIK-----EKKLSLLFF---DTEMSLVEILSEMEISGIKVDLPFLRNFNEKIVYE 541

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSN 269
            K ++ +I K+      +      L   +F    + ++  ++         L  + SH  
Sbjct: 542 LKIIENNIYKIAGIEF-NINSQKQLSSVMFEKLNLPVIKKTKTGYSTDEEVLVELSSHEF 600

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQ 328
             ++ K   L +L S+      ++ L++     G R+         + TGR S      Q
Sbjct: 601 PAEILKYRELQKLKSTY-----IDPLTDYCVYYGSRIHTIFN-QAVTTTGRLSSTEPNLQ 654

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                 R   +    K  + AD + I+ RV
Sbjct: 655 NIP------------------------VKSAYGKEFRKAFVPERNKIFISADYSQIDLRV 690

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGA-- 445
           LA I+ +   I+AF  G DI+  T  + FN P    ++   R+  K +   + Y      
Sbjct: 691 LAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLTDSLRSAAKSINFGIIYGMSPFG 750

Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
             K            +  + +       + +                       +  S +
Sbjct: 751 LSKQLNIPFGKAKEYIDGYFERYDKVKFWMEQIVKQASEDGYVRTITGRIRYIPELRSTN 810

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDL 524
             ++      A+   + G++ +++K A  + +  +          LQ+  DL
Sbjct: 811 AQVRKAGERMALNTPVQGSSADIIKIAMISVYNEIKLKGYKSLMLLQVHDDL 862



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597
            A+   +       + K  +  ++  +    Y   + G   Y+    S   + R  G ++
Sbjct: 761 KAKEYIDGYFERYDKVKFWMEQIVKQASEDGYVRTITGRIRYIPELRSTNAQVRKAGERM 820

Query: 598 TENI-VQAISRDILCEGMKN----ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL 647
             N  VQ  S DI+   M +        GY  ++   VHD+++ E PD    ++ ++
Sbjct: 821 ALNTPVQGSSADIIKIAMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISI 877


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/396 (15%), Positives = 133/396 (33%), Gaps = 66/396 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+  E  L  +   +   G  +  + +  L     +  +    +   +    + +     
Sbjct: 505 LTGLELPLARVLSGMELAGVAVSKETLDTLMADFGKTIETAQTEAYAIIGHEV-NLGSPK 563

Query: 240 ALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDLILNRLASSGSAIL---KLNTL 295
            L+  LF   G+      +        + +++T       L +L +   A      +  L
Sbjct: 564 QLQTVLFDELGMPKTKKIKTGFSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQTVEGL 623

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            +++ SD R+  T     A+ TGR S      QN+P +                      
Sbjct: 624 IKSIGSDTRVHTTYAQNVAA-TGRLSSNNPNLQNIPIRS--------------------- 661

Query: 356 PLGLASDCVRSCIIASN-----GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   +R   +         + L+ AD + IE R++A ++G++  I+AF +GED++ 
Sbjct: 662 ---EEGRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHR 718

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466
              +  FN    +V+   R+  K M   L Y     G +K            ++ +    
Sbjct: 719 FVGSHIFNVEPQEVTSAMRSKVKAMSYGLVYGLSSFGLSKQLNISVDEARTLMKDYFDRF 778

Query: 467 KSTSTFED-----------WEQAESHHLW----------MQDQYPEFAVKDKLIGTACEL 505
            +   +              E  ES   +          +++     A+   + G+A ++
Sbjct: 779 GAVRDYLRGVVEQARLDGFTETIESRRRYLPELTSDNRQLREMSERAALNAPIQGSAADI 838

Query: 506 VKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535
           +K+A      G+       ++   + +     V EG
Sbjct: 839 IKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEG 874



 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGMKNATK----NGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
           +Q  + DI+   M          G    ++L VHDE+V E  +     V  L  + M 
Sbjct: 831 IQGSAADIIKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQMA 888


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/530 (17%), Positives = 168/530 (31%), Gaps = 88/530 (16%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D       H + +     +   G           + LA     P   +     L+L +
Sbjct: 396 LADAEQPKALHEAKWAMHALR---GRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRY 452

Query: 119 SEHLTKMEE-GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                ++EE G+  ++            D   A                ++   +  +  
Sbjct: 453 LRRELRVEETGQEQLSLLDDADQ----VDAEAAETEILSARAVLDLAAALDTELDNIEST 508

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             LS+ E  L  +   I   G  +D   +  LQ   A E  +  E    +    I +   
Sbjct: 509 ALLSEMELPLLEVLAVIEASGIAVDGTHLHDLQSRFAAEVSEAAEAAYGVIGKQI-NLGS 567

Query: 238 TYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGS 287
              L++ LF    +                L+++    SH  +  L       RL  +  
Sbjct: 568 PKQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRLKVT-- 625

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++ L + V+ DGR+  T     A+ TGR S      QN+P +              
Sbjct: 626 ----VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT------------- 667

Query: 348 NRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                       A   +R   +   G   L+ AD + IE R++A ++G+   I+AF  GE
Sbjct: 668 -----------DAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDAGLIEAFNTGE 716

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           D++    A+AF  PI++V+ E R   K M   L Y     G A   K         ++ +
Sbjct: 717 DLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAY 776

Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501
                    +      ++                      +   ++     A+   + GT
Sbjct: 777 FARFGGVRDYLHEVVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGT 836

Query: 502 ACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
           A +++K A             K + +LQ+  +L        +E      R
Sbjct: 837 AADIIKVAMINVQRSLREAGLKSRMLLQVHDELVLEVVDSEREQVEQLVR 886


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 128/394 (32%), Gaps = 62/394 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E     L   +   G   D D +  +++  A   ++  ++          +     
Sbjct: 80  LHEMELPTSELLARLERAGIAADRDHMEGMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPK 138

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+   F    +     ++    +            D  L  +        KL      L
Sbjct: 139 QLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHREQAKLRVTVEGL 198

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            +++++DGR+  +     A+ TGR S      QN+P +                      
Sbjct: 199 VKSIAADGRVHTSFSQTTAA-TGRLSSTDPNLQNVPVRT--------------------- 236

Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  +
Sbjct: 237 ---DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVAS 293

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F     +V  E R   K M   L Y     G A+      +     ++ F +      
Sbjct: 294 QVFGVERSQVDAEMRRKIKAMSYGLAYGLSAFGLAQQLNIEPAEARGLMETFFERFGGVR 353

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +      E+                      +   ++     A+   + GTA ++VK A
Sbjct: 354 DYLQRVVDEARATGYTATVFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVA 413

Query: 510 WRAKHQGVL------QLWKDLTEGFACVVQEGGS 537
                + +       ++   + +     +  G +
Sbjct: 414 MLRVDKAIAEAGLKSRMLLQVHDEIVLEIAPGEA 447


>gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 842

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 133/360 (36%), Gaps = 58/360 (16%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +  ++   G +I+ +     ++ + +  +KL+ +I  L      +      L  
Sbjct: 504 ENKLVPVLASMEMYGIKINKEYFENYKKELQENIEKLEGEIYSLLGEAF-NIGSPKQLAE 562

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEA 298
            LF   GI+ V  ++    T   +L    +   ++A+ L+  R   +      +  L + 
Sbjct: 563 ILFDKMGIEPVKKTKTGYSTDVEVLEELALRGIEIAEKLLEYR-GFTKLLSTYVEPLPKL 621

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
                R+  T    G + TGR S      QN+P +                         
Sbjct: 622 ADEKDRIHTTFNQNG-TSTGRLSSTNPNIQNIPVRT------------------------ 656

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   I+  G  LV  D + IE RVLA ++ ++  + A+   +D++  T  K F 
Sbjct: 657 DEGIKIRKGFISEEGWSLVSFDYSQIELRVLAELSKDENLVLAYKKDKDLHDLTARKIFF 716

Query: 419 TPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
              ++ V++E+R+I KV+  ++ Y     G +K  K   +   L ++ + +       F 
Sbjct: 717 KADEEQVTREERSIAKVINFSILYGKTPFGLSKELKIPVADASLYIKTYFEQYPKVKRFL 776

Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +                      +   S +  +Q Q    AV   + GTA  ++KK    
Sbjct: 777 ENILENAKLNGFVETLYGTRRYIKGINSSNKNLQAQANRMAVNTVVQGTAANIIKKVMIK 836


>gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4]
 gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4]
          Length = 885

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/519 (15%), Positives = 168/519 (32%), Gaps = 79/519 (15%)

Query: 33  CAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           C +A   D+ + + D  E    P+ L + L ++ V+    +     +   + LG+ + S 
Sbjct: 341 CGFAIGTDKELWVSDDVELLREPA-LSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            +    + +          +    L    H   +E+ K     +  G+  + P       
Sbjct: 399 NY-DILLQSYLLDT----NDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPAKDVLLE 453

Query: 152 HVQAWQLFGEYCKRDVEAT--RELFKRLIPLSD------GERDLWLLDQTINDRGYRIDL 203
           H+          K DV     R L + LI           E  L ++   +   G ++D 
Sbjct: 454 HLAH--------KIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDR 505

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  +Q  + +   +L+  I +       +      L   LF      ++  ++    T
Sbjct: 506 ERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTGYST 564

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             ++L          D IL+    +      ++ L + + S  +   T      ++TGR 
Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P +                              +R   + S  G  ++ +
Sbjct: 625 SSTDPNLQNIPIR------------------------IEEGKKIRQAFVPSHEGWHILSS 660

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELA 438
           D + IE RVLA I G+    +AF   EDI+ +T  + F      +V+   R   K +   
Sbjct: 661 DYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFG 720

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474
           + Y     G ++            +  + +       + D                    
Sbjct: 721 IVYGISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRR 780

Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 + +  ++      A+   + G+A +++K A   
Sbjct: 781 YLPDIHASNFSVRSFAERTAMNTPIQGSAADIIKIAMIN 819


>gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
 gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
          Length = 885

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/519 (15%), Positives = 168/519 (32%), Gaps = 79/519 (15%)

Query: 33  CAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           C +A   D+ + + D  E    P+ L + L ++ V+    +     +   + LG+ + S 
Sbjct: 341 CGFAIGTDKELWVSDDVELLREPA-LSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            +    + +          +    L    H   +E+ K     +  G+  + P       
Sbjct: 399 NY-DILLQSYLLDT----NDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPAKDVLLE 453

Query: 152 HVQAWQLFGEYCKRDVEAT--RELFKRLIPLSD------GERDLWLLDQTINDRGYRIDL 203
           H+          K DV     R L + LI           E  L ++   +   G ++D 
Sbjct: 454 HLAH--------KIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDR 505

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  +Q  + +   +L+  I +       +      L   LF      ++  ++    T
Sbjct: 506 ERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTGYST 564

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             ++L          D IL+    +      ++ L + + S  +   T      ++TGR 
Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P +                              +R   + S  G  ++ +
Sbjct: 625 SSTDPNLQNIPIR------------------------IEEGKKIRQAFVPSHEGWHILSS 660

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELA 438
           D + IE RVLA I G+    +AF   EDI+ +T  + F      +V+   R   K +   
Sbjct: 661 DYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFG 720

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474
           + Y     G ++            +  + +       + D                    
Sbjct: 721 IVYGISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRR 780

Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 + +  ++      A+   + G+A +++K A   
Sbjct: 781 YLPDIHASNFSVRSFAERTAMNTPIQGSAADIIKIAMIN 819


>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 842

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 141/416 (33%), Gaps = 68/416 (16%)

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLV 206
             + +V+ +         +    R   ++L  + +  +R L  +   +   G  +++  +
Sbjct: 413 NLSKNVETFSAKILIAIHEKLTQRLFQEKLFTIYERFDRPLMKVIFDMEQNGILLNIQKL 472

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L +   Q    L+ DI  L       +     L   LF    +     S+ +     +
Sbjct: 473 QELSDKFEQLIAVLENDIHNLAGEKFNIA-SPKQLSDVLFNKMELSKKKKSK-SGSYSTN 530

Query: 267 HSNITQLAKD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
           +  +  L ++       ILN    S       + L + V   DGR+  +      + TGR
Sbjct: 531 YEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHTSFS-TTVTATGR 589

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P +                            + +R   IA  G K++ A
Sbjct: 590 LSSSNPNLQNIPIRS------------------------EEGNFIRQAFIAPKGCKIISA 625

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE ++LA +A      +AFAN +DI+  T  + F     ++ ++ R   K +   +
Sbjct: 626 DYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFGV--QEIDEQLRRKAKTINFGI 683

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------------- 482
            Y     G AK            +  +         + +   + + +             
Sbjct: 684 IYGISPFGLAKRLGITFQEAAEYINYYFSCYPEIKVYMEKAVSIARNHGYVETLFGRRCF 743

Query: 483 --------LWMQDQYPEFAVKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524
                    +++      A+   L GTA +++K+A           + +LQ+  +L
Sbjct: 744 VRDINNKIPYLRQFAERAAINAPLQGTAADIIKRAMIRLFDQLKSGKIILQVHDEL 799



 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           Q  + DI+   M           I+L VHDE++ E  ++    V     LM
Sbjct: 768 QGTAADIIKRAMIRLFDQLKSGKIILQVHDELLVEVEES---RVQETAKLM 815


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/410 (15%), Positives = 136/410 (33%), Gaps = 62/410 (15%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  +DL+ +  L+        +  E+   +    I +      L++ LF   G+ 
Sbjct: 492 ELEIAGVAVDLEQLTTLEAHYLSRVTQAAEEAYAVIGKQI-NLGSPKQLQVVLFDELGMP 550

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSDGRLRGT 308
               ++    +            +    +         KL T    L ++V+ DGR+  T
Sbjct: 551 KTKRTKTGYTTDAEALQGLFEKTEHPFLQHMLEHRDATKLRTTVEGLIKSVADDGRIHTT 610

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
           L     + TGR S      QN+P +                              +R   
Sbjct: 611 L-LQTIAATGRLSSTEPNLQNIPVRT------------------------EEGRRIRDAF 645

Query: 369 IASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           +   G   L+ AD + IE R++A ++ ++  I+AF +GED++    ++AF+ P ++++ E
Sbjct: 646 VVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPE 705

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474
            R   K M   L Y     G ++  +         ++ +         +           
Sbjct: 706 LRYRVKAMSYGLAYGLSAYGLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKN 765

Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL---- 518
                            S +   ++     A+   + G+A +++K A    H+ ++    
Sbjct: 766 GYTETVFGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALVEAKL 825

Query: 519 --QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             ++   + +     V EG      ++              + + +   R
Sbjct: 826 KSRILLQVHDELVLEVAEGEKEQLEQLVREGMGSAYALAVPLEVSVGYGR 875



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M N  +          I+L VHDE+V E  +     +  L  
Sbjct: 801 IQGSAADIIKVAMLNVHRALVEAKLKSRILLQVHDELVLEVAEGEKEQLEQLVR 854


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/576 (19%), Positives = 201/576 (34%), Gaps = 106/576 (18%)

Query: 7   DIETRSPQPLPKVGVWAY-AEQAVITLCAYAWDDEPVKLWDRTEQSAM----PSDLLQYL 61
           D ET       K    A  A +A IT  +++  +          +  +    P  L  +L
Sbjct: 26  DFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCEDPDALWAFL 85

Query: 62  RDE-----TVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTN-----GLPSS-L 109
           ++       V+C+AHN  FE +   K+ + +  P    I  + L   +     GL  S L
Sbjct: 86  KESIFESHDVICIAHNLSFEAMFLYKQGIVVQEPCYDTIAAAQLTMKSKWEFRGLHDSGL 145

Query: 110 KNACLAL---NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-WQLFGEYCKR 165
           K    +L   +     + + +G+           ++  Y C  +++    +  F  +  R
Sbjct: 146 KLLATSLFGADMPS-FSSVTDGRHF-DEMNPQEYETVRYACADSDYTLCLYYKFNNWFDR 203

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            + A R + ++L      E    ++   +   G  +D   +L+ Q     +   L  +I 
Sbjct: 204 FLPAHRIITEQL------ESPTAVMVGCMKYNGIPVDRKAMLEKQTEAVAKVDALKAEIN 257

Query: 226 KLTDG-IIRSSRQTYALRMYLFLITGIDLVDMSEGTLK-------SILSHSNITQLAKDL 277
           +LT G  I ++  T A + YL+   G+ ++  +E   +        +L         + +
Sbjct: 258 ELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQHRPELV 317

Query: 278 ILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L +         KL +      L    S+ GR+   L   G + TGRW+      QN P
Sbjct: 318 RLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLG-TDTGRWAARNPNMQNAP 376

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R                      DP+G     +R+ I+A  G+ ++  D + IE RV A+
Sbjct: 377 R-------------------KTNDPIG-----IRNFIVAPPGQIIMSLDFSQIELRVGAF 412

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------VSKEQRAIGKVMELALGYQGG 444
              +   ++ + +G DI+  T +  F  P +          KE R I K     + Y   
Sbjct: 413 YCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYGLF 472

Query: 445 AKVF-KTMASHCGLD-----------------------LQQFSQNVKSTSTFEDW----- 475
            +   KT+    GLD                        ++       T   E W     
Sbjct: 473 PRGLQKTLRFKAGLDTSFERCKEIIDNLKSGYSGLTTWQEETKARAAKTCYAETWMGRRR 532

Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 S            A+   + GTA +++K A
Sbjct: 533 YLPHMLSSDWGKHSFAERCALNTPVQGTAADILKAA 568



 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 602 VQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
           VQ  + DIL             +     +L +HDE+V   P+         +   M + P
Sbjct: 557 VQGTAADILKAACARIVAGFPERPWLKPILQIHDELVFLLPEERLLEAQQFVKKCMEQQP 616

Query: 656 SWAKGLPLKAE 666
                +P+ AE
Sbjct: 617 YPDFDVPIVAE 627


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 143/414 (34%), Gaps = 58/414 (14%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L      + + G R+D   +    + + ++  KL+  I+        +     
Sbjct: 480 YENVELPLIYSLARMENTGVRVDEKRLKDYADTLLEKISKLEASIIDKAGESF-NINSPK 538

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294
            L   LF    +     ++       +   + +LA +  + R       + KLN+     
Sbjct: 539 QLGEILFGKLKLSGGKKTK--TGYSTAADVLEKLAPEHEIIRDILEYRQLTKLNSTYATG 596

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L+  +  DGR+ G+      + TGR S      QN+P +                     
Sbjct: 597 LAGYIRDDGRIHGSFN-QTITATGRISSTDPNLQNIPVRT-------------------- 635

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   +   G   V AD + IE RVLA ++G++  I+++    DI+  T A
Sbjct: 636 ----EMGSKIRDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIESYHTAADIHAATAA 691

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F+ P+DKV+ E R   K +   + Y     G ++            +  + +  +   
Sbjct: 692 QVFHVPLDKVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYEGVK 751

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F D + A++                      +   +      A+   + G+A +++K A
Sbjct: 752 RFLDKQVADAKEKGYVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIMKIA 811

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                + + +   D         +    +    V  V  +V R  +  V + +P
Sbjct: 812 MIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREAVSLKVP 865



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642
            R++G ++  N  +Q  + DI+   M    +     G+D  IVL +HDE++ E      +
Sbjct: 787 TRSFGDRVAMNSPIQGSAADIMKIAMIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVY 846

Query: 643 SVGTLCS 649
            V  +  
Sbjct: 847 KVKEIVE 853


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 78/465 (16%), Positives = 152/465 (32%), Gaps = 85/465 (18%)

Query: 138 GSIDSPPYDCTRANHVQAWQLF---GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
            S+ S P +    ++++ +           R +    E   +L    + E  L  +   +
Sbjct: 535 PSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADM 594

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--------SSRQTYALRMYLF 246
              G  +   L+ +L +  +    +  +    +    ++        +      L+  LF
Sbjct: 595 EQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQTDDGEEPLNLASVKQLQTVLF 654

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----------NTLS 296
               +      +    S  + S    LAK    +  A+   A+               L 
Sbjct: 655 DKLALPHTRKIKSGY-STDAESVTELLAKISPESDGAAFLGALAAYRDNIKLVQTVEGLQ 713

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +A + DGR+  T Q  GA+ TGR S      QN+P +                       
Sbjct: 714 KAAADDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRT---------------------- 750

Query: 357 LGLASDCVRSCIIAS-------NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                  +R   I +         + L+ AD + IE R++  +A ++  I A+  GED++
Sbjct: 751 --EEGRRIRGAFIVAPAPVDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLH 808

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               ++ F    ++V+ EQR+  K M   L Y     G AK     +   G     + + 
Sbjct: 809 RYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFKR 868

Query: 466 VKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACE 504
                 F      ++H                         ++     A+   + GTA +
Sbjct: 869 FGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPDLDSPNRVRREAAERAALNAPIQGTAAD 928

Query: 505 LVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRV 543
           ++K A    H+ +       ++   + +     V  G   +A RV
Sbjct: 929 IIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERV 973



 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGT-LCSLMT 652
           +Q  + DI+   M    +   + G    +   VHDEI+ E       +    L   M+
Sbjct: 922 IQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMS 979


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 170/485 (35%), Gaps = 87/485 (17%)

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            L     +   +   +E     +E +A  AR  + + D+       A H    QLF    
Sbjct: 504 ALDLGNDSDLSSQGSNEDNQPDQEDQAAQAR--RDARDAKECAYILALH----QLFYPVL 557

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           ++         + +  L D E  +  +   +   G  +D   +  + +  A +  + +  
Sbjct: 558 EK--------RQEISLLKDIELPVSTVLARMELTGAGVDYSRLRNMYDSFAAQAAQAEHI 609

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLIL 279
                   I + +    L+  LF   G++    ++     T  + L    I  +  +   
Sbjct: 610 AWDQAGKQI-NLQSPKQLQAVLFDDMGLEPTRKTKSGGRTTNAAALQELYIRSVHNERAN 668

Query: 280 NRL--ASSGSAILKL----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             L        + KL     TL ++V+ SDGR+  T +   A+ TGR S      QN+P 
Sbjct: 669 TFLGALLRHREVNKLKQIVQTLMDSVNTSDGRIHTTFEQTVAA-TGRLSSTDPNLQNIPN 727

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAW 391
           +                         +    +R+  + S+G   L+ +D + +E R++A 
Sbjct: 728 R------------------------NVEGREIRAAFVPSDGYLSLLSSDYSQVELRLMAH 763

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y     G A+ 
Sbjct: 764 LSGDEALIEAFRSGADFHKYVASLVYQVPLDQITPDQRSHIKAMSYGLAYGLSTYGLAQQ 823

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                +       ++         + +                     +    S    ++
Sbjct: 824 LGISPAQSDQLKAKYFSTFGKVHDYLESLVSQAKKRGYTTTMFGRRRYFPDLLSSRRQLR 883

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGG 536
           D     A+   + G+A +++K A               + +LQ+  +L    A   +E  
Sbjct: 884 DAAQRAALNAPIQGSAADIMKIAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEV 943

Query: 537 SISAR 541
           +   +
Sbjct: 944 TALVK 948



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M        + G    I+L +HDE+V E        V  L  
Sbjct: 895 IQGSAADIMKIAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEVTALVK 948


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 119/358 (33%), Gaps = 56/358 (15%)

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G  +D+D + +L++   +          ++    + +      L+  LF   
Sbjct: 508 VLVHMERHGIAMDVDYLRELEQHFGELVTGAAASAYEVIGREV-NLGSPKQLQEVLFDQL 566

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRL 305
            +      +    +  +      +  +    +         +L      L ++V+ DGR+
Sbjct: 567 DMPKTKKIKTGYTTDAAALADLFVKTEHPFLKFLLDHRDSTRLRQTVEGLLKSVADDGRI 626

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T Q   A+ TGR S      QN+P +  +                           +R
Sbjct: 627 HTTFQQTIAA-TGRLSSTEPNLQNIPIRTEA------------------------GRRIR 661

Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              +  +G   L+ AD + IE R++A ++G++  I+AF  GED++    ++ F      V
Sbjct: 662 RAFVVGDGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAV 721

Query: 425 SKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +   R+  K M   L Y     G +             ++ +        T+      E+
Sbjct: 722 TPAMRSKIKAMSYGLAYGLSSFGLSNQLNIDVKEASKLMEDYFTRFGGVRTYLAGVVDEA 781

Query: 481 H---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                 +   ++     A+   + G+A +++K A     + +
Sbjct: 782 RANGYTATIMGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVEKEI 839


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 152/432 (35%), Gaps = 68/432 (15%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            LF      D   TR   + L  + +  +  L  +   +   G R+D      LQE +A 
Sbjct: 427 ALFRLRQGLDAAMTR--HQGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAA 484

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
             + ++  +  +    + +      +   LF+  G      ++G        + +  LA+
Sbjct: 485 RIRAIEAQVEDMAGTAV-NLNSPKQVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLAR 543

Query: 276 DL--ILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
                +  L      + K+ +     L +A    +G +  T +    + TGR S      
Sbjct: 544 LPGGEVPALLLEHRELSKMQSGFVVPLQKAAEEGEGVIHTTFEP-ALTGTGRLSSRDPNL 602

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEA 386
           QN+P                          G  ++ ++  ++    G   V AD + IE 
Sbjct: 603 QNIP------------------------AFGQWAERIKQGLVPVREGNVFVAADYSQIEL 638

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-- 444
           RVLA ++ E   ++AF NG DI+  T +  F+   + V+ E R + K++   L Y     
Sbjct: 639 RVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRVAKMINFGLLYGMSAF 698

Query: 445 --AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------ 490
             A+          + ++++ + +    +F      E+H                     
Sbjct: 699 GLAERLDMPRGEASMIVKRYFEALPGVQSFLKDIVKEAHAAGFARTLAGRIRPVDEVTAQ 758

Query: 491 ------EFAVKDKLIGTACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSIS 539
                    V   + GTA ++ +KA        +H G ++L+  + +   C   E  +  
Sbjct: 759 GRGGLDRVLVNTPIQGTAADIARKAMVDFDRAFRHDGEVRLFLQVHDSLVC---ECPAAR 815

Query: 540 ARRVANVPRLVM 551
           A  V +  R +M
Sbjct: 816 AEEVGHSLREIM 827


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 111/676 (16%), Positives = 209/676 (30%), Gaps = 178/676 (26%)

Query: 14   QPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTE--------QSAMP--------S 55
              +   G+    +     I L   +  ++P  + D  +         + +P         
Sbjct: 1224 VDIETTGL----DHNTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNELIKCE 1279

Query: 56   DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             L    + +  + V HN  F+    +         +  I  +++A              +
Sbjct: 1280 WLKNLFKSKDTVKVFHNGKFDINFLR---VYGFEFEGPIFDTMVASKL--------LVAS 1328

Query: 116  LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174
               S  LT + E              +  Y  +  + +Q ++    Y  RD      L+ 
Sbjct: 1329 RYISCKLTHVSE-----RYLNIVLDKTQQY--SDWSTLQLFEEQLLYSARDSFVLLPLYV 1381

Query: 175  --------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV- 225
                      L  ++  E    L    +   G ++D D +  LQ+ + QE +++  D+  
Sbjct: 1382 ILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDLYS 1441

Query: 226  KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            +L    I  + Q    +  L  +  + ++D S+  + S  S S + +   + I++ L   
Sbjct: 1442 QLNHSEINLNSQ----KQVLEKLQELKIMDRSKKKIISDTSESTLIRNMSNPIISSLREY 1497

Query: 286  GSAILKL----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              A   L      L   ++    R+       GA  +GR+S      Q +PR ++     
Sbjct: 1498 RKANKALTAFTQKLPNHINPITKRIYPNYNQLGA-ESGRFSCDGPNLQQVPRDKK----- 1551

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                    R C +A  G K V+AD + IE R+ A IA +   I+
Sbjct: 1552 -----------------------FRECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQ 1588

Query: 401  AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            A+    D++  T +   N  I++V+KE+R + K +   L +       +           
Sbjct: 1589 AYQQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFGLIFGMSINGLRM---------- 1638

Query: 461  QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                        Y E     KL  T  + +  ++    +G+L  
Sbjct: 1639 ----------------------------YAETGYNLKLTQTEAKEIYTSFFNNFKGILNW 1670

Query: 521  WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
               +      +V+                 +   +          R L Y          
Sbjct: 1671 HNSVKNSRPTMVR------------TLGNRLSVFESFSFT-----RSLNYP--------- 1704

Query: 581  NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSET 636
                                 VQ  S DI  E M     +       I++ VHDEI+ E 
Sbjct: 1705 ---------------------VQGTSADITKETMARLVDSVKPLNAKIIICVHDEIILEV 1743

Query: 637  PDT-PYFSVGTLCSLM 651
            P+     ++  L   M
Sbjct: 1744 PEDNAEKALKMLIDTM 1759


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 89/557 (15%), Positives = 166/557 (29%), Gaps = 107/557 (19%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+      H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            + LA     P              LN +    +    +A++  F +             
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 469

Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +            DV E   E       L D E  +     ++   G  +D+D+   L
Sbjct: 470 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAVDMDIFEGL 518

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262
           +    +   + +E   +     I  S     L+  LF    +     ++           
Sbjct: 519 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 577

Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
                  H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR
Sbjct: 578 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P +                              +R   +   G + L+ 
Sbjct: 631 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   
Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483
           L Y     G +   K         +  +         + +    ++              
Sbjct: 727 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 786

Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527
                       +D     A+   + G+A +L+K A  A  Q         ++   + + 
Sbjct: 787 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 846

Query: 528 FACVVQEGGSISARRVA 544
               V +G     R + 
Sbjct: 847 LILEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 89/557 (15%), Positives = 166/557 (29%), Gaps = 107/557 (19%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+      H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            + LA     P              LN +    +    +A++  F +             
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 469

Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +            DV E   E       L D E  +     ++   G  +D+D+   L
Sbjct: 470 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAVDMDIFEGL 518

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262
           +    +   + +E   +     I  S     L+  LF    +     ++           
Sbjct: 519 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 577

Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
                  H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR
Sbjct: 578 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P +                              +R   +   G + L+ 
Sbjct: 631 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   
Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483
           L Y     G +   K         +  +         + +    ++              
Sbjct: 727 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 786

Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527
                       +D     A+   + G+A +L+K A  A  Q         ++   + + 
Sbjct: 787 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 846

Query: 528 FACVVQEGGSISARRVA 544
               V +G     R + 
Sbjct: 847 LILEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 127/431 (29%), Gaps = 45/431 (10%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L D     V H    +     +  G   +        + L      P     A  AL+  
Sbjct: 499 LGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLE 554

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               ++   +    +   G+ D                L      R  E   E       
Sbjct: 555 YLGRELVPAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGL----- 609

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E     L   +   G   D + + +++   A   ++   +          +     
Sbjct: 610 LTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEF-NLGSPK 668

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+  LF    +     ++    +            +  L  L        KL      L
Sbjct: 669 QLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTVEGL 728

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            ++++ DGR+  T     A+ TGR S      QN+P +                      
Sbjct: 729 IKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--------------------- 766

Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE RV+A ++ ++  I AF +GED++ T   
Sbjct: 767 ---DEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 823

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             FN     V  E R   K M   L Y     G ++     A      +  + +      
Sbjct: 824 YVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTYFERFGGVR 883

Query: 471 TFEDWEQAESH 481
            +      E+ 
Sbjct: 884 DYLHRVVEEAR 894


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 143/402 (35%), Gaps = 66/402 (16%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+D E  L  +   +   G  ++  L+L L   + +  +++  +  ++    I +     
Sbjct: 476 LTDIEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREI-NLGSPK 534

Query: 240 ALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---TL 295
            L+  LF    +     ++ G      S +++ + A    LN L     A   +     +
Sbjct: 535 QLQEVLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQIITGI 594

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            +A+   GR+  T +  G S TGR +      QN+P +  +                   
Sbjct: 595 EKAIDDSGRVHTTYEQAG-SSTGRIASNDPNLQNVPIKTAT------------------- 634

Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +RS   A  G   L+ AD + IE R++A ++G++  I+AF  GED++    +
Sbjct: 635 -----GRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGS 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F     +V+ E R   K M   L Y     G +K  +   S     +  +     +  
Sbjct: 690 RIFGVEPAEVTAEMRTKVKAMSYGLAYGLSAFGLSKQLRIETSEAKALMTDYFARFGAVR 749

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +                       +    S +  ++D     A+   + G+A +++K A
Sbjct: 750 DYLRNVVEQARTDGYTTTIFGRRRPFGDLNSKNRVLRDNAERQALNSPIQGSAADILKLA 809

Query: 510 WRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                        K + +LQ+  +L    A    E  +    
Sbjct: 810 MLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTTIVH 851



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595
           +  A+ +           +  +  V+  +R   Y+  + G         S+    R    
Sbjct: 731 TSEAKALMTDYFARFGAVRDYLRNVVEQARTDGYTTTIFGRRRPFGDLNSKNRVLRDNAE 790

Query: 596 KLTENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648
           +   N  +Q  + DIL   M          G    ++L VHDE+V E        + T+ 
Sbjct: 791 RQALNSPIQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTTIV 850

Query: 649 -SLMT 652
              M+
Sbjct: 851 HERMS 855


>gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake]
 gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake]
          Length = 861

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 136/382 (35%), Gaps = 65/382 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E+ L  +   +   G  +++D++  L    +++   L+ +I KL+      +    
Sbjct: 457 YERVEKPLIRVLDNMEKIGVLVNVDVLKTLSATFSEKINMLESEIYKLSGAEFNIASS-K 515

Query: 240 ALRMYLFLITGIDLVDM----SEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNT 294
            L   LF   GI         +  T   +LS      +   D IL     +       + 
Sbjct: 516 QLGNILFDKMGIKKGKKLSSGNYSTDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYTDV 575

Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L +  +S+ GR+  T     ++ TGR S      QN+P +                    
Sbjct: 576 LEKQKNSNSGRVH-TFYSMVSTATGRLSSSNPNLQNIPVRS------------------- 615

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   IA  G KL+ AD + IE R++A IA       AF   +DI+  T 
Sbjct: 616 -----EEGNSIRRAFIAKKGYKLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITA 670

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDL 459
            + FNT  +K+ K  R   K +   + Y                 A  +         ++
Sbjct: 671 KQIFNT--EKLDKNLRRRAKSINFGIIYGMSAFGLAKQLSISRSEASTYINNYFRSYPEI 728

Query: 460 QQFSQNVKSTSTFEDWEQ-----------AESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           Q + +N+K+ +    + +             S ++  ++     A+   L GT+ +++K 
Sbjct: 729 QSYMENIKAYAKTHGYTRTIFGRKCFVKDINSDNVTARNFSERAAINAPLQGTSADIIKM 788

Query: 509 AWR------AKHQGVLQLWKDL 524
           +             +LQ+  +L
Sbjct: 789 SMIHLFDKLKNGSLILQVHDEL 810


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 154/510 (30%), Gaps = 93/510 (18%)

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPS----SLKNACLALN--FSEHLTKMEEGKALIAR 134
              +       R I  + LA     P     SL +    L     E    + +    +  
Sbjct: 378 HAWVERGFTQPRPIMDTELAAYLLAPDARGYSLADMASDLGVVLEEDRDLLTDVGEQLGH 437

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQT 193
               ++   P                   ++D+E        L  + D  E     +   
Sbjct: 438 RAWVTVALYPR-----------------LRQDLE-----RNHLQDVLDGIEIPTQEILAR 475

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  ID  ++ +L        ++   +        + +      L+  LF    +  
Sbjct: 476 MEIAGIAIDQSVLNELITEFEAAAQQSASEAYASIGHEV-NLNSPKQLQTVLFDELNMPK 534

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN----TLSEAVSSDGRLRGTL 309
              ++    +         +           +     KL      L + V+ DGR+  T 
Sbjct: 535 TKRTKTGYTTDADSLADLLVKTQHPFLEHLLAHRDRTKLKQTVVGLQKVVADDGRIHTTY 594

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P +                          A   +RS   
Sbjct: 595 -LQTVAATGRLSSKDPNLQNIPVRT------------------------DAGRRIRSVFQ 629

Query: 370 A---SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
           A      + L+  D + IE R++A ++G++  I+AF +GED++     + F  PI+ V+ 
Sbjct: 630 AAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVTD 689

Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH- 481
           +QR+  K M   L Y     G ++            +  +     +   + D    E+  
Sbjct: 690 QQRSKVKAMSYGLVYGLSAYGLSRQLGIPTGEASALMDDYFARFGAVKEYLDQVVEEARG 749

Query: 482 --------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL--- 518
                                  +++     A+   + G+A +++K A +     +    
Sbjct: 750 RGYTETMYGRRRYLPQLRSDRRQLREMAERAALNAPIQGSAADIMKIAMKRVDDALREAE 809

Query: 519 ---QLWKDLTEGFACVVQEGGSISARRVAN 545
              ++   + +     +  G +I   ++  
Sbjct: 810 LKSRMLLQVHDEIILEIWAGEAIQVEKLVR 839



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   MK              ++L VHDEI+ E        V  L    M++ 
Sbjct: 786 IQGSAADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQA 845


>gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
 gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
          Length = 880

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 136/397 (34%), Gaps = 69/397 (17%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           DV   R    +L  L+D E  L  +   +  +G  +DL  +    + ++    KL  +I+
Sbjct: 471 DVLTER---NQLSLLNDVELPLSDVLADMEYQGLTVDLKELENQTKDMSLRIDKLRTEIL 527

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
            L      +      L   LF   G+     ++    T   +L++        +LI+   
Sbjct: 528 LLAGVDF-NVDSPKQLGDVLFDTLGLPNGKKTKTGYSTGIEVLNNLIDHHPIINLIIEYR 586

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +      L  + E+V  D R+         + TGR S      QN+P +         
Sbjct: 587 QLTKLYSTYLIGIKESVFEDNRVHTIYN-QALTLTGRLSSLEPNLQNIPIRT-------- 637

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   I       V AD + IE RVLA +A      +AF
Sbjct: 638 ----------------EEGRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAF 681

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVF 448
              +DI+  T  K F+   D V  EQR   K +   + Y  G              A+ F
Sbjct: 682 EEDQDIHTVTAQKVFHV--DTVDSEQRRRAKAVNFGIIYGIGPWSLSEDIGVTVKEAENF 739

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDK 497
            +       +++ +  N+   +    +            +  S    +++     ++   
Sbjct: 740 ISRYLEVYPEIKDYMTNIVEFAKTHGYVETLLNRRRYIPELSSKVFNLREFGKRTSLNAP 799

Query: 498 LIGTACELVKKAW----------RAKHQGVLQLWKDL 524
           + GTA +++K A           + K + +LQ+  +L
Sbjct: 800 IQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVHDEL 836



 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
             L+E     V+E  +  +R    V   +       V             + +    Y+ 
Sbjct: 723 WSLSEDIGVTVKEAENFISR-YLEVYPEIKDYMTNIVEFAKTHGYVETLLNRR---RYIP 778

Query: 582 TATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634
             +S++   R +G + + N  +Q  + DI+   M +        K    ++L VHDE++ 
Sbjct: 779 ELSSKVFNLREFGKRTSLNAPIQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVHDELIV 838

Query: 635 ETPDTPYFSVGTLC-SLMTKN 654
           E        +  +  ++M K 
Sbjct: 839 EVVKEELDEMKEVIPNIMEKA 859


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 114/360 (31%), Gaps = 56/360 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E         +   G  +    +      +      L  D        + +     
Sbjct: 476 LDDIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAIGHEV-NLGSPK 534

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+  LF    +     ++    +  +     Q +       L        KL    + L
Sbjct: 535 QLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHREATKLKQIIDAL 594

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             A   DGR+  T    G S+TGR S      QN+P +                      
Sbjct: 595 DTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIPIRT--------------------- 632

Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                S  +R+      G   L+ AD + IE R++A ++G+   I+AF +GED++    A
Sbjct: 633 ---EESRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHRFVGA 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + F     +V+   R   K M   L Y     G +K  +   S     + ++     +  
Sbjct: 690 RVFGVEPAEVTPAMRTKVKAMSYGLVYGLSAFGLSKQLRIEQSEAKKLMLEYFARFGAVR 749

Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +                       +    S +  +++     A+   + G+A +++K A
Sbjct: 750 DYLRGSVEQARQDGYTETIFGRRRPFPDLTSMNRVLRENAERAALNAPIQGSAADIMKVA 809


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 176/555 (31%), Gaps = 115/555 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET                   + L   A +D PV + D         +L+  +
Sbjct: 28  KVIAVDTETT-GLDPHTC---------QLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 77

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLA-LN 117
              + + V  N+ F+       + +DI       T + ++     G P       LA   
Sbjct: 78  LSTSGVKVFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 134

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +E L K E+                          +  +    Y  RD E    L K +
Sbjct: 135 LNEDLDKEEQTSNWQG--------------------ELTESQILYAARDAEILLRLRKVM 174

Query: 178 IP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           IP         +++ E         +  RG  +D     +L E    ERK   +++    
Sbjct: 175 IPQILENHLTQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV 234

Query: 229 DGIIRSSRQTYALRMYL--------FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +  +        + ++         F      L  + E  +    +        +   L 
Sbjct: 235 ERPL------MQMSLWGEDVAINQNFESQQFVLNVLHEHGIPVAATAKQDLYPHRRHPLV 288

Query: 281 RLASSGSAILK-----LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   S     K     L   +  +    GRL        A  +GR S      Q +PR  
Sbjct: 289 KTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPRDS 347

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                         R+C  A  G+KL++AD + IE RV A I+G
Sbjct: 348 E----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 379

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   I A+  GED+++ T +   + PI+++S ++R   K +   L +  GA   +  A  
Sbjct: 380 DTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 439

Query: 455 -CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-------------------V 494
             G+++            F+ +      H  ++   P+                      
Sbjct: 440 NYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEGRTLAGRKFVYYEKAGLPGYY 499

Query: 495 KDKLIGTACELVKKA 509
              + GTA ++VKKA
Sbjct: 500 NTPVQGTAADIVKKA 514


>gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 321

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 111/302 (36%), Gaps = 67/302 (22%)

Query: 265 LSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRT 317
            + + + +LA+ D  L ++     ++ KL +     L E ++   GR+  +      + T
Sbjct: 1   TAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAVT 59

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P +                              +R   +A  G KL+
Sbjct: 60  GRLSSSDPNLQNIPIRT------------------------AEGRRIRQAFVAPKGYKLL 95

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+ + R   K +  
Sbjct: 96  AADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINF 155

Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-------------- 479
            L Y       AK            + ++         + +  +A+              
Sbjct: 156 GLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRR 215

Query: 480 -------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK 522
                  + +  ++      A+   + GTA +++KKA  A +          + +LQ+  
Sbjct: 216 LYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHD 275

Query: 523 DL 524
           +L
Sbjct: 276 EL 277



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   ++ G   E V    R   + +          F    Q G  +  ++          
Sbjct: 129 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 186

Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607
           R+   +         ++ +     + G   YL    ++    R    ++  N  +Q  + 
Sbjct: 187 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 246

Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650
           DI+ + M        ++G D  ++L VHDE+V E  +     V  +   
Sbjct: 247 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 292


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/491 (16%), Positives = 157/491 (31%), Gaps = 91/491 (18%)

Query: 69   VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
            + HN  F+  +     GI         + +LA        L +   +++    + K    
Sbjct: 600  IGHNIKFDLHIAWHNFGIKPK-HTPQDSMLLAW-------LDDPSQSVSLDNLMKK---- 647

Query: 129  KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELF----KRLIP---- 179
                  F    I        +A       +    Y   D  AT +L+      L P    
Sbjct: 648  -----HFNHNMIAFSDIVPKKATFDSIDIKTASNYAAEDAAATFQLYFYFKNTLYPHLFT 702

Query: 180  -LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
               D E         + D G  I+      L+   +   ++L ++I +       +    
Sbjct: 703  LAKDLEFPFIRTLCAMEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKAGVSF-NLNSP 761

Query: 239  YALRMYLFLITGIDLVDMSEG---TLKSIL-----SHSNITQLAKDLILNRLASSGSAIL 290
              +   LF    +D     +    T ++ L     SH  +  L +   + +L S+     
Sbjct: 762  KQVAEILFDTLKLDTKRKGKSGYSTDEATLLALKDSHPVVPLLLEYREIFKLFSTY---- 817

Query: 291  KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             +  + +   ++ R+  T    G + TGR S      QN+P +                 
Sbjct: 818  -IEPILKLGKNENRIYTTFLQTG-TNTGRLSSKSPNLQNIPVRS---------------- 859

Query: 351  ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         +R   ++ +G KL+  D + IE R+LA  +G+   +++F N  DI+ 
Sbjct: 860  --------EMGRSIRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHA 911

Query: 411  TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466
             T    F    +K     R+I K +   L Y  GA    +      +     ++ +    
Sbjct: 912  ETAKLLF-KDSNKDFSLLRSIAKSINFGLIYGMGARKLSQTLNITQTEAKQYIEDYFATF 970

Query: 467  KSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             S   F                    + +    S   +M+  +    V     G+A +L+
Sbjct: 971  PSVKQFLESQKDSILKNGYSSTLLGRKRYFDFFSATEFMRANFLREGVNTIFQGSAADLI 1030

Query: 507  KKAWRAKHQGV 517
            K +    ++ +
Sbjct: 1031 KLSMNEIYKKI 1041



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 598  TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650
               I Q  + D++   M    K          ++L VHDE++ E  D+   S+   L  +
Sbjct: 1018 VNTIFQGSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSKELKEI 1077

Query: 651  M 651
            M
Sbjct: 1078 M 1078


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 151/409 (36%), Gaps = 73/409 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G ++D+  ++++++ +A +  +  E   +     + + +   
Sbjct: 538 LKSIELPVSQVLHGMEQVGAQVDMARLVQMRDQLAADAAQAQETAWQFAGEQV-NLQSPK 596

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+++   S     A   +   L       LK
Sbjct: 597 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLK 656

Query: 292 --LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + TL +A +  DGR+  T +   A+ TGR S      QN+P +               
Sbjct: 657 QIVQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 700

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      A   +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G+D
Sbjct: 701 ---------DPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKD 751

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+D ++ +QR+  K M   L Y     G A+  K           Q+ 
Sbjct: 752 FHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLSTYGLAQQLKIKPKEAESLKNQYF 811

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     +   +S +  ++D     A+   + G+A
Sbjct: 812 ATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 871

Query: 503 CELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541
            +++K A    +            +LQ+  +L    A   ++  +   +
Sbjct: 872 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVK 920



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLM 651
           +Q  + DI+   M  A         G  ++L +HDE+V E  P     +   +   M
Sbjct: 867 IQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAM 923


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/535 (16%), Positives = 184/535 (34%), Gaps = 82/535 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113
           ++      T++   +    E++    +LG+D+P    +  + LA     P    +     
Sbjct: 452 VILAQYAPTLVVHGY---KEQLHLFASLGVDLPKP--LFDTKLAGYLVQPDFHADTLEQA 506

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            A     H+ +  E             D+       +  +Q   +  E   R +    + 
Sbjct: 507 AARFLDIHVEEKTEEATQGLLDLDDGADADADGNQTSTLLQHAAIIAELA-RALAPQIDQ 565

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++   L   E  +  +   +  +G ++D+  +  +++  A + ++  E         + 
Sbjct: 566 REQFGLLQRMELPVSHVLYGMESQGAKVDMQRLTSMRDTFAADARQAQEIAWDYAGTTV- 624

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNRLASS 285
           + +    L   LF   G+     ++          L+ +       + A   +   L   
Sbjct: 625 NLQSPKQLGKVLFEDMGLKPTKRTKTGGYTTNADALQKLYFTYADDERASGFLGALLRHR 684

Query: 286 GSAILK--LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +  LK  + TL +A +  D R+  T +   A+ TGR S      QN+P +         
Sbjct: 685 ETNKLKQIVATLIDATNPADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------- 734

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKA 401
                            A   +RS  +   G + L+  D + +E R++A ++G++  I+A
Sbjct: 735 ---------------NAAGREIRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEA 779

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
           F +G D +    +     P+D+++ +QR+  K M   L Y     G A+  K   S    
Sbjct: 780 FKSGADFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAYGLSSYGLAQQLKIRPSEAEA 839

Query: 458 DLQQFSQNVKSTSTFEDWEQAESH-------HLWMQDQYPEF--------------AVKD 496
              ++         F +   +E+            +  +P                A+  
Sbjct: 840 LKAKYFATFGKVHDFLESCVSEARKRGYTETMFGRRRYFPALKSTNRAARDAAERAALNA 899

Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541
            + G+A +++K A     +           +LQ+  +L    A   +E  S   R
Sbjct: 900 PIQGSAADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVR 954



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M        + G    I+L +HDE+V E        V  L  
Sbjct: 901 IQGSAADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVR 954


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 129/376 (34%), Gaps = 61/376 (16%)

Query: 170 TRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              L+  + PL  D +  L  +   +  RG  +D   +  L   +    ++L+  +    
Sbjct: 428 EEPLWPSVAPLVRDLDLPLAPVLARMESRGIGVDEGALASLDVRLEGRSRELEALVRAEA 487

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSN-ITQLAKDLILN 280
              + + +    +   LF   G+  +  ++       G L+ +    + ++++ + L+ +
Sbjct: 488 GEEV-NLQSPKQMAALLFERLGLPPLKKTKTGFSTDVGVLEELAKLPDPLSRVPRHLLEH 546

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           R  +          L +A    G +  T +   A+ TGR S      QNLP         
Sbjct: 547 REVAKLRTGFVQPFLKQAHRDGGHIYSTFE-QTATGTGRLSSRDPNVQNLP--------- 596

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                            G  ++  R C++  S   + + AD + IE RVLA + GE   +
Sbjct: 597 ---------------VFGEWAEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLV 641

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455
           +AF  G DI+  T +  +    ++VS EQR   KV+   L Y       A+         
Sbjct: 642 QAFEAGRDIHRETASWVYGVAAEEVSAEQRRFAKVVNFGLLYGMSAHGLAQRMGVGRPEA 701

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---------------------DQYPEFAV 494
              + ++   +     + +    E+                                 AV
Sbjct: 702 AQIIDRYFSVLPRVREYLEETVREAKARGYTVSLFGRVRPLGEVSTVEGRGGGALDRVAV 761

Query: 495 KDKLIGTACELVKKAW 510
              +  TA ++ K A 
Sbjct: 762 NSPIQSTAADIAKVAM 777


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/557 (15%), Positives = 165/557 (29%), Gaps = 107/557 (19%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+      H++        K     +  + W      C
Sbjct: 377 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 428

Query: 96  TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            + LA     P              LN +    +    +A++  F +             
Sbjct: 429 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 487

Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +            DV E   E       L D E  +     ++   G   D+D+   L
Sbjct: 488 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDIFEGL 536

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262
           +    +   + +E   +     I  S     L+  LF    +     ++           
Sbjct: 537 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 595

Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
                  H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR
Sbjct: 596 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 648

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P +                              +R   +   G + L+ 
Sbjct: 649 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 684

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   
Sbjct: 685 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 744

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483
           L Y     G +   K         +  +         + +    ++              
Sbjct: 745 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 804

Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527
                       +D     A+   + G+A +L+K A  A  Q         ++   + + 
Sbjct: 805 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 864

Query: 528 FACVVQEGGSISARRVA 544
               V +G     R + 
Sbjct: 865 LILEVAKGEEEKVREIV 881



 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 829 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 881


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 132/392 (33%), Gaps = 67/392 (17%)

Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208
           F E   +  +   +L + L    +           E  +      +   G  + +D++ +
Sbjct: 460 FSELAGQ-AQVVYDLHEVLFKQLETTQLAELYRGLELPVQADLYELEKHGVAMSMDVLNQ 518

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L E + ++ +  +E         +  +     L+  LF    +     ++    +     
Sbjct: 519 LLEELTEQVEVAEEAAYNAIGHKVNLA-SPMQLQTVLFEELQMPKTKKTKRGYTTNAEAL 577

Query: 269 NITQLAKDLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                       +   +    +K    +  L  AV +DGR+  T Q   A+ TGR S   
Sbjct: 578 VELYEKTQHPFLQHLLAHRDKIKMRQIVEGLISAVGADGRIHTTFQQTVAA-TGRLSSTE 636

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAG 383
              QN+P          +T + +                +R   +   G   L+ AD + 
Sbjct: 637 PNLQNIP---------ARTAEGMR---------------IRGAFVPGTGFDYLLTADYSQ 672

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442
           IE R++A ++ ++  I+AF +GED++ T  A  F  P+++V+   R+  K     L Y  
Sbjct: 673 IEMRLMAHMSKDEALIEAFKSGEDLHRTMAAMVFAVPVEEVTPALRSQIKATSYGLAYGL 732

Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW--------------- 484
              G ++             +++ +       F      E+                   
Sbjct: 733 SSYGLSQQLGISVPEARKLKEKYFERFGGVGRFLGEVVEEARERGFTATMMGRRRYLPDL 792

Query: 485 ------MQDQYPEFAVKDKLIGTACELVKKAW 510
                 ++      A+   + GTA +++K A 
Sbjct: 793 NSGNTNLRAMAERAALNAPIQGTAADIIKLAM 824


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/557 (15%), Positives = 165/557 (29%), Gaps = 107/557 (19%)

Query: 43  KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95
            +W D  E S    D+    L D+      H++        K     +  + W      C
Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410

Query: 96  TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            + LA     P              LN +    +    +A++  F +             
Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 469

Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +            DV E   E       L D E  +     ++   G   D+D+   L
Sbjct: 470 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDIFEGL 518

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262
           +    +   + +E   +     I  S     L+  LF    +     ++           
Sbjct: 519 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 577

Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
                  H  +  L +     +L  +      ++ L + +  DGR+  T      + TGR
Sbjct: 578 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P +                              +R   +   G + L+ 
Sbjct: 631 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K M   
Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483
           L Y     G +   K         +  +         + +    ++              
Sbjct: 727 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 786

Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527
                       +D     A+   + G+A +L+K A  A  Q         ++   + + 
Sbjct: 787 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 846

Query: 528 FACVVQEGGSISARRVA 544
               V +G     R + 
Sbjct: 847 LILEVAKGEEEKVREIV 863



 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + D++   M    +          ++L VHDE++ E        V  + 
Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/547 (14%), Positives = 177/547 (32%), Gaps = 91/547 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57
            ID ET S        V+    +A I   + ++ +                E+  +    
Sbjct: 340 SIDTETTSTN------VY----EAQILGISVSFKEFESYYIPIETKEKKSIEREYITQKF 389

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            ++ +      +  N  F+  +F +     IP   +  T + A      + +    L+  
Sbjct: 390 NEFFK-TKPKLIGQNYKFDYKIFTRHGFNAIPP--YFDTMIAAYVIDPNTKVSLDFLSEK 446

Query: 118 FSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +  H   K +E  +         +++          +  ++LF  + K+  E   E    
Sbjct: 447 YLMHKNIKYQEIVSQNGTLKDIPLETVSNYAAEDADI-TFRLFKIFAKKLKEDNLESL-- 503

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              + D E     +   + + G  +D D + +  + + +E K ++ +I++ + GI  +  
Sbjct: 504 ---MIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLIENEIIQ-SIGIKFNLN 559

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSIL-------SHSNITQLAKDLILNRLASSGSAI 289
            +  L   LF    + L    +    SI         H +I ++ +   +++L ++ +  
Sbjct: 560 SSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKIIQYRKISKLKNTYT-- 617

Query: 290 LKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              + L + ++    ++        A+ TGR        QN+P                 
Sbjct: 618 ---DNLIKFINAKTNKIHTNFIQAKAA-TGRILSTAPNLQNIP----------------- 656

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R       G   + AD + IE  +LA  + +   I+AF N EDI
Sbjct: 657 -------IKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAFKNKEDI 709

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464
           ++ T ++ F    DKV+   R + K +   + Y   A    +            +  +  
Sbjct: 710 HIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQELSIKREEAQKFIDSYFN 769

Query: 465 NVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTAC 503
                  F       +                          +      A+   + G+A 
Sbjct: 770 LYSKIKIFIQNRIDFARKNGYSETLLKRRRYIKEINSQNHSERSGAERIAINSTIQGSAS 829

Query: 504 ELVKKAW 510
           +++K A 
Sbjct: 830 DIMKIAM 836



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 16/176 (9%)

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--------SISARRVANV 546
           +D  I TA +L K         + ++ K +  G    +   G           A++  + 
Sbjct: 707 EDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQELSIKREEAQKFIDS 766

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG--KLTENIVQA 604
              +  + K  +   +  +R+  YS+            +        G       + +Q 
Sbjct: 767 YFNLYSKIKIFIQNRIDFARKNGYSETLLKRRRYIKEINSQNHSERSGAERIAINSTIQG 826

Query: 605 ISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN 654
            + DI+   M               I+L VHDEI+ E+P        T+   M +N
Sbjct: 827 SASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILIESPKQECEEAKTIIKEMMEN 882


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 108/542 (19%), Positives = 189/542 (34%), Gaps = 98/542 (18%)

Query: 2   SKLFIDIETRSP-QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQ 59
           S LF+D ET S    L ++G                 ++E V + D  E  S     L  
Sbjct: 23  SYLFLDTETVSEKIRLVQLG-----------------NNEDVFIVDLFETGSYGVDFLKD 65

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNF 118
            L D+ +  V HN  ++    K      I       T + ++  G L             
Sbjct: 66  LLVDKGI--VGHNLKYD---LKFLYRYGIEPYAVFDTMIASQLLGELDRHSLQKVAMHYL 120

Query: 119 SEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-- 175
            E L K  +          K  ++    D      +  + +  +           L K  
Sbjct: 121 GEVLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDL--YSILLDKLNSTAHQEETLLKTR 178

Query: 176 --RLI----PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             R+     P++  E         +   G  +D   + +L++LI + +K L++ +++   
Sbjct: 179 TSRVFGLKNPVAIIEMAFVQEVAKLELNGIGVD---IKELEDLIREYKKNLNKKVMEFMM 235

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSG 286
                      L   L    G+DL    +G   T   ILS     +  + ++  R   + 
Sbjct: 236 HYRIDPLSPKQLGELLSKRLGLDLPKTEKGNISTDDKILSQFIHHKPVQMILEIR--MTK 293

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
             + KL+ +   V  DG +    +  GA  TGR S      QN+PR              
Sbjct: 294 KLLDKLDEIRSFV-KDGSVYPEFKQIGAI-TGRMSSLNPNVQNIPRD------------- 338

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R    A  GK LV++D + IE R+ +   G++  IKAF  G+
Sbjct: 339 -----------------LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGK 381

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------- 458
           D++  T +       + +SKE+R + K +   L Y   A+     A   G+D        
Sbjct: 382 DLHRYTASVLLGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGIDLSVDDAQK 441

Query: 459 -LQQFSQNVKSTSTFEDWEQAESHHL------------WMQDQYPEFAVKDKLIGTACEL 505
              +F +  +S   + +  + E   L            ++   +P+ AV   + GT  +L
Sbjct: 442 IRDRFFEYFRSFKEWHERVKRELKQLGGSRGYTLLGRSYVAHTFPD-AVNYPIQGTGADL 500

Query: 506 VK 507
           +K
Sbjct: 501 LK 502


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/487 (16%), Positives = 158/487 (32%), Gaps = 91/487 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           +  N  F+  + KK     IP   +  T + A      + +    LA  +  H       
Sbjct: 414 IGQNYKFDYKILKKHEFNVIPP--YFDTMIAAYVIDPNTKVSLDFLAEKYLMHKN----- 466

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--------- 179
              I        +    + T  +     ++   Y   D + T  LFK             
Sbjct: 467 ---IRY-----EEIVAQNGTLKDIPL--EMVSNYAAEDADITFRLFKIFTKKLKEDNLEN 516

Query: 180 -LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            ++D E     +   + + G  +D D + +    + +E K ++ +I+K       +   T
Sbjct: 517 LMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIENEIIKSIGIEF-NLNST 575

Query: 239 YALRMYLFLITGIDLVD--MSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILK 291
             L   LF    + L      + T   +L      H +I +L +   + +L ++ +    
Sbjct: 576 KQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLIQYRQIAKLKNTYT---- 631

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            + L E V+    ++         + TGR S      QN+P                   
Sbjct: 632 -DNLIEFVNEKTNKIHTNF-IQTKTATGRISSTSPNLQNIP------------------- 670

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R       G   + AD + IE  +LA ++ ++  I+AF N +DI++
Sbjct: 671 -----IKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKKDIHI 725

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466
            T ++ F    +KV+   R I K +   + Y+  A    K            +  +    
Sbjct: 726 KTASQLFKVDEEKVTSSMRRIAKSINFGIIYRMSAFRLSKELSIKREEAQKFIDSYFNLY 785

Query: 467 KSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               TF                        ++  S +   +      A+   + G+A ++
Sbjct: 786 SKIKTFIQNQIDFVRKNGYSETLLKRRRYIKEINSQNYSERSGAERIAINSTIQGSASDI 845

Query: 506 VKKAWRA 512
           +K A   
Sbjct: 846 MKIAMIK 852



 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
             + +Q  + DI+   M               I+L VHDE++ E+P+     V  +   M
Sbjct: 834 INSTIQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLIESPEQECEEVNKIIKTM 893

Query: 652 TKN 654
            +N
Sbjct: 894 MEN 896


>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
 gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
          Length = 858

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 172/517 (33%), Gaps = 99/517 (19%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D  + + +   +   L    V+ + HN    R +F  T    + S   +     +   G 
Sbjct: 342 DSIQDALI--TINSTLLSNGVLKIIHNIKEIRKIFPAT-EKMLDSVDDLMIMSYSLDTGK 398

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                   +A N SE+  ++   K LIA                 +     +LF      
Sbjct: 399 HDHSIPNIVAHNLSEN-AEIFSAKTLIA----------------IHEKLKQRLFQ----- 436

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E    +++R       ++ L  +   +   G  +++  + +L +   Q    L+++I 
Sbjct: 437 --EKLFTIYERF------DKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIY 488

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279
            L       +     L   LF   G++    S+ +     ++  +  L ++       IL
Sbjct: 489 NLAGERFNIA-SPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKIL 547

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N    S       + L + V   DGR+  +      +  GR S      QN+P +     
Sbjct: 548 NWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATAT-GRLSSSNPNLQNIPIRS---- 602

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  + +R   IA  G K++ AD + IE R+LA +A     
Sbjct: 603 --------------------EEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 642

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            +AFAN +DI+  T  + F     ++ ++ R   K +   + Y     G AK      + 
Sbjct: 643 KEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493
               +  +         + +   + +                        +++      A
Sbjct: 701 AAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQFAERAA 760

Query: 494 VKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524
           +   L GTA +++K+A           + +LQ+  +L
Sbjct: 761 INAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDEL 797



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           Q  + DI+               I+L VHDE++ E  D     V     LM
Sbjct: 766 QGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEK---VQETAKLM 813


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 104/534 (19%), Positives = 178/534 (33%), Gaps = 107/534 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIE     PL           A + L   A       + D  E   + S L + L    
Sbjct: 32  LDIEATGLSPL----------DARMRLLQLAA-GGETFVVDVFEVKDL-SPLREALE-GG 78

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLALNFSE 120
            + V HN+ ++        GI +       T + A+       G   SL+         E
Sbjct: 79  PLKVLHNAKYDYSFLLAQHGIRLSPL--FDTMLAAQLLDGGEQGPSYSLEAVA-GRYLQE 135

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-- 178
            + K    +       +  +                    EY  RD      L +RL   
Sbjct: 136 TVDKTARREDWSKELSREQL--------------------EYAARDAAILLPLHERLQEL 175

Query: 179 -------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----- 226
                  P+S  E         +   G R+D+    +L+ ++ + R +    +       
Sbjct: 176 LEREGLGPVSRIEFGAVPAIAEMELAGIRLDVRRWRELERVVRRRRDEAARRLESHFPQP 235

Query: 227 -----LTD-GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
                L   G   +      +    F   GI+L D    T    L   +    A+DL+  
Sbjct: 236 EGVLPLEGLGPRLNLNSPQQIME-AFRSIGIELPD----TRMWTLLTVDHPA-ARDLLEY 289

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           R          L T    V    GR+  +        TGR +      Q +P        
Sbjct: 290 R-ELQKKLGTYLETYEGFVHPKTGRIHASFLQCRVP-TGRLACTNPNVQQIPH------- 340

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                 D  R C +A  G  LV+AD + IE R+LA ++G+   +
Sbjct: 341 ---------------------EDEFRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFV 379

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  GED++  T A  F  P ++V+KEQR+  K +   L Y  G    +++A+  G D 
Sbjct: 380 EAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRG---PRSLAAQLGTDE 436

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
           ++  + +      +++           ++    A+K+  + T    ++K  R +
Sbjct: 437 ERARRLI------DEYFATYGRVQRYLNETANRALKEGALRTLSGRLRKFGRTR 484


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 139/421 (33%), Gaps = 78/421 (18%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           ++      +    L+D E  L  +   +   G  +D   +  LQ   A    +  E    
Sbjct: 496 LDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDLQSAFAARVAEAAEAAYA 555

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKD 276
           +    I +      L++ LF    +                L+S+     H  +  L + 
Sbjct: 556 VIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQHPFLEHLLEH 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               RL  +      ++ L + V+ DGR+  T     A+ TGR S      QN+P +   
Sbjct: 615 RDATRLKVT------VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-- 665

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395
                                  A   +R   +   G   L+ AD + IE R++A ++G+
Sbjct: 666 ----------------------DAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHLSGD 703

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF  GED++    ++AF  PI++V+ E R   K M   L Y     G A   K  
Sbjct: 704 AGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKIS 763

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
                  +  +         +      ++                      +   ++   
Sbjct: 764 TEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRREVAE 823

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + GTA +++K A               + +LQ+  +L    A   +E      
Sbjct: 824 RAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLV 883

Query: 541 R 541
           R
Sbjct: 884 R 884


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 139/421 (33%), Gaps = 78/421 (18%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           ++      +    L+D E  L  +   +   G  +D   +  LQ   A    +  E    
Sbjct: 496 LDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDLQSAFAARVAEAAEAAYA 555

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKD 276
           +    I +      L++ LF    +                L+S+     H  +  L + 
Sbjct: 556 VIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQHPFLEHLLEH 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               RL  +      ++ L + V+ DGR+  T     A+ TGR S      QN+P +   
Sbjct: 615 RDATRLKVT------VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-- 665

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395
                                  A   +R   +   G   L+ AD + IE R++A ++G+
Sbjct: 666 ----------------------DAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHLSGD 703

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF  GED++    ++AF  PI++V+ E R   K M   L Y     G A   K  
Sbjct: 704 AGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKIS 763

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
                  +  +         +      ++                      +   ++   
Sbjct: 764 TEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRREVAE 823

Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540
             A+   + GTA +++K A               + +LQ+  +L    A   +E      
Sbjct: 824 RAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLV 883

Query: 541 R 541
           R
Sbjct: 884 R 884


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 98/555 (17%), Positives = 178/555 (32%), Gaps = 115/555 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET                   + L   A +D PV + D         +L+  +
Sbjct: 23  KVIAVDTETT-GLDPHTC---------QLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLA-LN 117
              + + +  N+ F+       + +DI       T + ++     G P       LA   
Sbjct: 73  LSTSGIKIFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 129

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +E L K E+                          +  +    Y  RD E    L K +
Sbjct: 130 LNEDLDKEEQTSNWQG--------------------ELTESQILYAARDAEILLRLRKVM 169

Query: 178 IP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           IP         ++  E         +  RG  +D     +L E    ERK   +++    
Sbjct: 170 IPQILENHLTQIAGIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV 229

Query: 229 DGII-------------RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  +             ++      +   L    GI +   ++  L     H  +     
Sbjct: 230 ERPLMQMSLWGEDVAINQNFESQQFVLNVLHE-HGIPVAATAKQDLYPYRRHPLV----- 283

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +L+   ++ S    L   +  +    GRL        A  +GR S      Q +PR  
Sbjct: 284 KTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPRDS 342

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                         R+C  A  G+KL++AD + IE RV A I+G
Sbjct: 343 E----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 374

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   I A+  GED+++ T +   + PI +++ ++R   K +   L +  GA   +  A  
Sbjct: 375 DTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 434

Query: 455 -CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-------------------V 494
             G+++            F+ +      H  ++   P+                      
Sbjct: 435 NYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEGRTLAGRKFVYYEKAGLPGYY 494

Query: 495 KDKLIGTACELVKKA 509
              + GTA ++VKKA
Sbjct: 495 NTPVQGTAADIVKKA 509


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 151/409 (36%), Gaps = 73/409 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G ++D+  ++++++ +A +  +  E   +     + + +   
Sbjct: 485 LKSIELPVSQVLHGMEQVGAQVDMTRLVQMRDQLAADAAQAQETAWQFAGEQV-NLQSPK 543

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+++   S     A   +   L       LK
Sbjct: 544 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLK 603

Query: 292 --LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + TL +A +  DGR+  T +   A+ TGR S      QN+P +               
Sbjct: 604 QIVQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 647

Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      A   +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G+D
Sbjct: 648 ---------DPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKD 698

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+D ++ +QR+  K M   L Y     G A+  K           Q+ 
Sbjct: 699 FHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLSTYGLAQQLKIKPKEAESLKNQYF 758

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     +   +S +  ++D     A+   + G+A
Sbjct: 759 ATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 818

Query: 503 CELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541
            +++K A    +            +LQ+  +L    A   ++  +   +
Sbjct: 819 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVK 867



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLM 651
           +Q  + DI+   M  A         G  ++L +HDE+V E  P     +   +   M
Sbjct: 814 IQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAM 870


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 130/367 (35%), Gaps = 58/367 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +  +G  ID D   K    +     +++++I  L      +     
Sbjct: 483 YENIEKKLVPVLADMEKKGILIDPDYFGKYGNELKNNLAEIEKNIYGLAGEEF-NINSPK 541

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASSGSAILKLNT 294
            L   LF    +D V  ++    + +    +      ++A+ ++  R   +      +  
Sbjct: 542 QLSEILFEKMMLDPVKKTKTGYSTDVEVLEVLAAQGVEVAEKILEYR-GYTKLLTTYVEP 600

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +   S+ R+  T    G + TGR S      QN+P                       
Sbjct: 601 LPKLADSENRIHTTFHQNG-TATGRLSSSNPNIQNIP----------------------- 636

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   ++  G   +  D + IE RVLA ++ ++  I A+   +D++  T  
Sbjct: 637 -VKTDEGIKIRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKDKDLHDLTAR 695

Query: 415 KAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           K F    ++ VS+E+R+I KV+  ++ Y     G +K  K       L + ++ +     
Sbjct: 696 KLFFKTDEEPVSREERSIAKVINFSILYGKTPFGLSKELKIPMGDAKLYINKYFEEYPRV 755

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            TF +                          S +  ++ Q    AV   + GTA  ++K 
Sbjct: 756 RTFLNSVLQEAKLNGFVETLYGTRRYITGINSSNKNIEAQADRMAVNTVVQGTAANIIKI 815

Query: 509 AWRAKHQ 515
                ++
Sbjct: 816 VMVKLYE 822



 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 598 TENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
              +VQ  + +I+   M         K   +++L VHDE++ E  +      +  + ++M
Sbjct: 801 VNTVVQGTAANIIKIVMVKLYEEFKDKEDINMLLQVHDELIFEVKNESVDKYLKEIDNIM 860

Query: 652 TKNP 655
               
Sbjct: 861 ENTI 864


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 140/380 (36%), Gaps = 56/380 (14%)

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           R  E   +  +    LS  E  +  +   +   G  IDLD + +    +A+   +  E  
Sbjct: 476 RFFETELKERRAEELLSTLELPVSRVLADMELAGIGIDLDRMDEQLADLARVIDQAQEQA 535

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--TLKSILSHSNITQLAKDLILNRL 282
                  + +      L+  LF    +      +   T  +    + + +   + ++  +
Sbjct: 536 FAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTGHEFLVQLM 594

Query: 283 ASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           A   +A L+  + +L ++V+ DGR+  T     A+ TGR S      QN+P +       
Sbjct: 595 AHREAAKLRQMIESLKKSVAEDGRIHTTYAQNVAA-TGRISSNNPNLQNIPIRS------ 647

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399
                                  VR   + S+G + L+ AD + IE R++A ++G+   I
Sbjct: 648 ------------------EEGRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLI 689

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455
           +A+ +GED++    +  F+ P D+V+   R+  K M   L Y     G +K  +      
Sbjct: 690 QAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEA 749

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494
              ++ +     +   +      ++                         +++     A+
Sbjct: 750 RTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTIEGRRRYLPDLTSTDRQLRENAERIAL 809

Query: 495 KDKLIGTACELVKKAWRAKH 514
              + G+A +++K+A    H
Sbjct: 810 NSPIQGSAADIIKRAMLGVH 829



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 56/161 (34%), Gaps = 10/161 (6%)

Query: 504 ELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           + V  A R+K + +   L   LT        E     AR +           +  +  V+
Sbjct: 712 DQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKDYFDRFGAVRDYLRGVV 771

Query: 563 PSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN 620
             +R   Y+  ++G   YL   TS   + R    ++  N  +Q  + DI+   M      
Sbjct: 772 DQARVDGYTSTIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVHAE 831

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
                    ++L VHDE+V E       +V  L    M   
Sbjct: 832 LQAQGLKSRMLLQVHDELVLEVAPGERAAVEALVTEQMAAA 872


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 137/411 (33%), Gaps = 75/411 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E  +      + D G  +D  L+ +L++                  G +  S    
Sbjct: 472 LLDLEMAVSRTLGEMEDAGIAVDEGLLEQLRQDFDGRVFAAARSAYDAIGGEVNLS-SPK 530

Query: 240 ALRMYLFLITGIDLVDMSEGT-----------LKSILSHSNITQLAKDLILNRLASSGSA 288
            L+  LF   G+      +               SI    +   LA    L  L     A
Sbjct: 531 QLQEVLFDQLGLPPTRKMKSGHTTNADALANLAVSIAGREDDKALAGQQFLASLLEHRDA 590

Query: 289 ILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
           I    +   L  +V  DGR+  T Q   A+ TGR S      QN+               
Sbjct: 591 IKLRQSVVGLQRSV-RDGRIHTTFQ-QTAAATGRLSSTDPNLQNI--------------- 633

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R+  +   G + ++ AD + IE R++A ++G+   I+AF  
Sbjct: 634 ---------HARTAEGRSIRAAFVPGEGYESIMTADYSQIEMRLMAALSGDVELIEAFRE 684

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460
           G D++    ++ +  P +KV+ + R+  K M   L Y     G +K  +   +     + 
Sbjct: 685 GADLHTYVASRVYGVPEEKVTADDRSHIKAMSYGLAYGLSAYGLSKQLRISVAQAQALMD 744

Query: 461 QFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLI 499
            +        T+ D    E+                      +   ++     A+   + 
Sbjct: 745 DYFSRFGRVRTYLDSLVQEARKEGYTQTILGRRRYLPDLNSTNRQAREAAERMALNAPIQ 804

Query: 500 GTACELVKKAWRA--------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           G+A +++K A  A        + + +LQ+  +L    A   ++      RR
Sbjct: 805 GSAADVIKLAMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAVVRR 855


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/559 (20%), Positives = 187/559 (33%), Gaps = 100/559 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIET    P            + I+L   A  + PV L +    +     L +++    
Sbjct: 71  LDIETTGLDPHT----------SEISLIQIAAPNRPVILIEFRSITHK-ESLRRFIEHHK 119

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA--LNFSEH 121
           +  V HN  FE     K LGI+     WI T ++A+    GLP +L++   A  L     
Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPIPNL 179

Query: 122 LTKMEEGKALIA----------RFCKGSIDSPPYDCTRANHVQAW-----QLFGEYCKRD 166
              ++  K L               + +     Y   ++  V  W     Q   +Y   D
Sbjct: 180 NQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239

Query: 167 VEATRE---------LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                          +  +L      E         +   G  +DLD   +L + I   R
Sbjct: 240 AAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299

Query: 218 KKLDEDIVK----------LTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           +   +   +          L  G    +      +   L    GI     S+ TL  +  
Sbjct: 300 EDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTNSTSKDTLDKLSE 358

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
           +         +I  R   S +       L   V+    R+   +    A+ +GR+S    
Sbjct: 359 NH---PEVFTIIEYR-HWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAA-SGRFSFSNP 413

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             Q +PR                                RSC + ++G KL++AD + IE
Sbjct: 414 NLQQIPR----------------------------ERQYRSCFVPASGYKLIIADYSQIE 445

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+ A IA +   I A+ N +D++  T A     P+D+V+K++R +GK +   L Y  GA
Sbjct: 446 LRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMGA 505

Query: 446 KVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
              +  A  + G+ +          + F+ +      H     +     VKD        
Sbjct: 506 TKLRIYAETNYGVKMSIEEAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKD-------- 557

Query: 505 LVKKAWRAKHQGVLQLWKD 523
                      G L+ WKD
Sbjct: 558 ------IRTLSGRLRRWKD 570


>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
          Length = 817

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 89/517 (17%), Positives = 174/517 (33%), Gaps = 99/517 (19%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D  + + +   +   L    V+ + HN    R +F  T    + S   +     +   G 
Sbjct: 301 DSIQDALI--TINSTLLSNGVLKIIHNIKEIRKIFPAT-EKMLDSVDDLMIMSYSLDTGK 357

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                   +A N SE+  ++   K LIA                 +     +LF      
Sbjct: 358 HDHSIPNIVAHNLSEN-AEIFSAKTLIA----------------IHEKLKQRLFQ----- 395

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E    +++R       ++ L  +   +   G  +++  + +L +   Q    L+++I 
Sbjct: 396 --EKLFTIYERF------DKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIY 447

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279
            L       +     L   LF   G++    S+ +     ++  +  L ++       IL
Sbjct: 448 NLAGERFNIA-SPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKIL 506

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N    S       + L + V   DGR+  +     A+ TGR S      QN+P +     
Sbjct: 507 NWRHLSKLKGTYTDALIKQVDPLDGRIHTS-FSTTATATGRLSSSNPNLQNIPIRS---- 561

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  + +R   IA  G K++ AD + IE R+LA +A     
Sbjct: 562 --------------------EEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 601

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454
            +AFAN +DI+  T  + F     ++ ++ R   K +   + Y     G AK      + 
Sbjct: 602 KEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 659

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493
               +  +         + +   + +                        +++      A
Sbjct: 660 AAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQFAERAA 719

Query: 494 VKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524
           +   L GTA +++K+A           + +LQ+  +L
Sbjct: 720 INAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDEL 756



 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           Q  + DI+               I+L VHDE++ E  D     V     LM
Sbjct: 725 QGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEK---VQETAKLM 772


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 90/514 (17%), Positives = 171/514 (33%), Gaps = 79/514 (15%)

Query: 81  KKTLGIDIPSKRWI-----CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
            K +   + S+ W        ++LA     P    +    +       ++ E     A F
Sbjct: 385 AKGVRHALASRGWTLGEVAFDTMLAAYLAHPDQRSHKLTDVVARILGIEVSEAADEGALF 444

Query: 136 CKGSIDSPPYDCTRANHVQAWQL--FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                +  P          A QL    E  +R    T E  K L  LSD E  L  L   
Sbjct: 445 DMDESEEGPTGAEMRAGRIAAQLIPLAERLRR----TLEESKELGLLSDMEMPLARLLGD 500

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  +D  ++  L   +  + +K      +     +  S     L+  LF    +  
Sbjct: 501 MEATGIGVDTGVLSDLSAELGADVEKARRGAWEAAGREVNLS-SPKQLQELLFDHFALPK 559

Query: 254 VDMS-------EGTLKSILSHSNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSDG 303
              +          L  + + +  +  A    L  L +    I     +++L   V +D 
Sbjct: 560 TKKTKTGYTTNAEALADLWAKTEASGGAGHRFLGYLLAHRDRIKLKQMVDSLIATVGADE 619

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T     A+ TGR +      QN+P +                              
Sbjct: 620 RIHTTFSQVAAA-TGRLASSDPNLQNIPARS------------------------PDGMR 654

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R       G   L+ AD + IE R++A ++G++  I+AF +GED++ T  +  F TP++
Sbjct: 655 IRGAFTPGPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVE 714

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           +VS E+R+  K     L Y     G A               ++ +       + +   A
Sbjct: 715 QVSGEERSRIKATSYGLAYGLSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVA 774

Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----- 512
           ++                      +   ++     A+   + G+A ++VK A        
Sbjct: 775 QARADGYTETMFGRRRYLPDLRSSNRQRREMAERAALNAPIQGSAADIVKIAMMNVASAL 834

Query: 513 KHQGV-LQLWKDLTEGFACVVQEGGSISARRVAN 545
            ++G+  +L   + +     +  G +  A ++  
Sbjct: 835 ANEGLATRLLVQIHDELLLEIAPGEADVAEKLVR 868


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 146/405 (36%), Gaps = 73/405 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G  +D   + ++++  A + +   E   +     + + +   
Sbjct: 533 LQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDAQETAWQFAGSRV-NLQSPK 591

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+ +   S   + A   +   L    +  LK
Sbjct: 592 QLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLK 651

Query: 292 --LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + +L +AV+ D GR+  T +   A+ TGR S      QN+P +               
Sbjct: 652 QIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 695

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +RS  +   G + L+ +D + +E R++A ++G+D  I+AF +G D
Sbjct: 696 ---------NAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGAD 746

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+D ++ +QR   K M   L Y     G A+  K           Q+ 
Sbjct: 747 FHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGEADRLKSQYF 806

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     +   +S +  ++D     A+   + G+A
Sbjct: 807 ATFGKVHEYLESLVAGAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGALNAPIQGSA 866

Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537
            +++K A           + + + +LQ+  +L    A    E  +
Sbjct: 867 ADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVT 911


>gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
 gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
          Length = 1046

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 131/368 (35%), Gaps = 62/368 (16%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   + + G +ID     + Q  + ++   L  DI KL DG   +      L  
Sbjct: 642 ESRLIPVLAQMEETGIKIDKKYFSEFQNELEEKINMLQSDIYKLADGEF-NIDSPQQLGE 700

Query: 244 YLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL---ILNRLASSGSAILKLN 293
            LF    I     ++         L+ I ++  +T+  + +   +L   A        + 
Sbjct: 701 VLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTEDKRMIGKKLLEYRAYKKLLSTYIE 760

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            + +    + R+  T    G + TGR S      QN+P +                    
Sbjct: 761 PIPKLADKEERIHTTFNQNG-TSTGRLSSANPNLQNIPVRTDD----------------- 802

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R+  ++  G  L+  D + IE RVLA ++ +   ++A+ + +D++  T 
Sbjct: 803 -------GIRIRTGFVSKEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTA 855

Query: 414 AKA-FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            K  F T  D++S+ +R+I KV+  ++ Y     G +K            +  + +    
Sbjct: 856 RKIFFKTEEDEISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFEEYPR 915

Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507
              F D     +                      +  +Q Q    AV   + GTA  ++K
Sbjct: 916 VRKFLDIVTETAKLHGFVETFYGTRRYISGINATNKNVQAQAVRMAVNTVVQGTAANIIK 975

Query: 508 KAWRAKHQ 515
           K     H+
Sbjct: 976 KVMIELHE 983


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 144/397 (36%), Gaps = 73/397 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G  +D   + ++++  A + +   E   +     + + +   
Sbjct: 534 LQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-NLQSPK 592

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+ +   S   + A   +   L    +  LK
Sbjct: 593 QLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLK 652

Query: 292 --LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + +L +AV+ D GR+  T +   A+ TGR S      QN+P +               
Sbjct: 653 QIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 696

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +RS  +   G + L+ +D + +E R++A ++G+D  I+AF +G D
Sbjct: 697 ---------NAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGAD 747

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+D ++ +QR   K M   L Y     G A+  K           Q+ 
Sbjct: 748 FHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGEADRLKSQYF 807

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     +   +S +  ++D     A+   + G+A
Sbjct: 808 ATFGKVHEYLESLVAGAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGALNAPIQGSA 867

Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFA 529
            +++K A           + + + +LQ+  +L    A
Sbjct: 868 ADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIA 904


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 146/405 (36%), Gaps = 73/405 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G  +D   + ++++  A + +   E   +     + + +   
Sbjct: 533 LQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-NLQSPK 591

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+ +   S   + A   +   L    +  LK
Sbjct: 592 QLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLK 651

Query: 292 --LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + +L +AV+ D GR+  T +   A+ TGR S      QN+P +               
Sbjct: 652 QIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 695

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +RS  +   G + L+ +D + +E R++A ++G+D  I+AF +G D
Sbjct: 696 ---------NAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGAD 746

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+D ++ +QR   K M   L Y     G A+  K           Q+ 
Sbjct: 747 FHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGEADRLKSQYF 806

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     +   +S +  ++D     A+   + G+A
Sbjct: 807 ATFGKVHEYLESLVADAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGALNAPIQGSA 866

Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537
            +++K A           + + + +LQ+  +L    A    E  +
Sbjct: 867 ADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVT 911


>gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
 gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
          Length = 918

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 133/401 (33%), Gaps = 60/401 (14%)

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           ++   +F  Y K   +   +  +++    + E  L  +  ++ + G  +D + +   +  
Sbjct: 494 LETVNIFKVYDKLKSQIEEDDLQKVF--YEIEMPLVEVIASMENTGVWLDTEFLKTYEAE 551

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
           ++    +L + I +L      +      L   LF    ++    ++    +      + +
Sbjct: 552 LSNIEAELLDKIYELAGFEF-NVNSPKQLGEVLFEKLNLEPKVKTKRGYSTNAE--VLQK 608

Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           L K   +  L      + KLN+           +DG++R      GAS TGR +      
Sbjct: 609 LRKTHPIIDLILEFRKVSKLNSTYVRGFMGFKGTDGKVRPEFLQIGAS-TGRMACINPAL 667

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q +P                                +R    A   +  V AD + IE R
Sbjct: 668 QTIP------------------------VKTDMGKRIRKAFKAGKDRVFVSADYSQIELR 703

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444
           +L  ++ ++  I AF +GEDI+              VSK  R+  K +   + Y      
Sbjct: 704 ILGHVSCDEGLINAFKSGEDIHEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGMSDFG 763

Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482
            +   +         + ++    ++   + +                       +  + +
Sbjct: 764 LSNELEISRKDAKKYIDEYFAKHRAVYEYMEAQKSIAKQTGAVRTETGRIRKIPEINAQN 823

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           + +++     A+   + G   +++K A    ++ + +   D
Sbjct: 824 IMVRNLGERLAMNSPIQGMGADIMKLAMNNVYRAIQKQGLD 864



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
           G +L  N  +Q +  DI+   M N  +          IVL +HDE+V +   +    V  
Sbjct: 830 GERLAMNSPIQGMGADIMKLAMNNVYRAIQKQGLDAKIVLQIHDELVIDASVSDGEKVKK 889

Query: 647 L 647
           L
Sbjct: 890 L 890


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 141/399 (35%), Gaps = 66/399 (16%)

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           T    +  W+L  +  +     +R L + L      +  L  +  ++   G +++  ++ 
Sbjct: 424 TEERAMALWRLRDDLSQ--TIESRGLSEVLY---GIDMPLVPVLVSMEKSGIKLEEPVLQ 478

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILS 266
            +   + +  +++ E+I       I +      +   LF   G+  V  ++ G    +  
Sbjct: 479 DVISDLKERLERIVEEITSAAGESI-NLNSPKQVGCLLFEKLGLPPVKKTKTGYSTDVTV 537

Query: 267 HSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              + +L +        L+ +R  S  S+   L  L  +V  DG +R T +    + TGR
Sbjct: 538 LEQLAELPEPHNAVPSMLLEHRALSKMSSGFAL-PLMSSVCGDGIIRSTFE-SDTTGTGR 595

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378
            S      QNLP                          G  SD ++S +I    G+  V 
Sbjct: 596 LSSRDPNLQNLP------------------------AYGEWSDRIKSSLIPREKGRCFVA 631

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + +E RVLA I+GE      F +G DI+  T +  F      V+KE R   K++   
Sbjct: 632 ADYSQVELRVLAHISGEKRLADIFRSGRDIHTETASMVFGVDSSMVTKELRRSAKMVTFG 691

Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-------------- 480
           L Y       AK      S     + ++   +     +      E+              
Sbjct: 692 LLYGMSAFGLAKRLGVGRSEADRIMSRYFAALPGVEAYVTKSADEAIAKGYTETLFGRIR 751

Query: 481 -------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                   +   +      A+   + GTA +L KKA  A
Sbjct: 752 PLEEVVTGNTRDRGHIRRVAINSPIQGTAADLAKKAMIA 790


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 96/578 (16%), Positives = 182/578 (31%), Gaps = 88/578 (15%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           D    + D  E S    + L  +    +  + H++   R                   ++
Sbjct: 343 DNEALVIDPVELSPQQEEALGEVLATALSLIVHDAKGARHALS---SRGWTLGGVEFDTM 399

Query: 99  LARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           LA     P   S K   +       + + EEG +  A F  G + + P          A 
Sbjct: 400 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEEEGDSE-ALFDLGDMGAGPSAAQVRAGKLAA 458

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            L                  L  L+D E  L +L   + D G   D  ++  L + + + 
Sbjct: 459 HLHPLASTLRSRLEESSEAAL--LTDMEMPLSVLLGQMEDIGIAADTSVLDGLSDELGKA 516

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD----------------MSEGT 260
                E         +  S     L+  LF   G+                     ++ +
Sbjct: 517 VDAAREGAWAAAGREVNLS-SPKQLQELLFDHFGLPKTKKTKTGYTTNAEALADLHAKTS 575

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            +    H  +  L       +L         +++LS  V+SDGR+  T     A+ TGR 
Sbjct: 576 DEGGAGHDFLGFLLTHRDRIKLKQM------VDSLSATVASDGRIHTTFSQVAAA-TGRL 628

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379
           +      QN+P +                              +R   +A  G + L+ A
Sbjct: 629 ASSDPNLQNIPARSAD------------------------GMRIRGAFVAGEGFESLMSA 664

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF +GED++ T  +  F TP+ +VS E+R+  K     L
Sbjct: 665 DYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGL 724

Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------------- 481
            Y     G A               ++ +       + +   A++               
Sbjct: 725 AYGLSSYGLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRY 784

Query: 482 -------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGF 528
                  +   ++     A+   + G+A ++VK A       +       +L   + +  
Sbjct: 785 LPDLRSSNRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDEL 844

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              V  G + +   +              + + +   R
Sbjct: 845 LVEVAPGEAAAVEAIVRDKMATPVELSVPLDVAVGVGR 882


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 100/575 (17%), Positives = 190/575 (33%), Gaps = 82/575 (14%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           D+   + D  E S    + L  +       + H++   R                   ++
Sbjct: 362 DKEALVIDPVELSPKQEEALGEVLATASSLIVHDAKGARHALS---SRGWTLGGVEFDTM 418

Query: 99  LARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQA 155
           LA     P   S K   +       + +  EG +  A F  G + + P     RA  + A
Sbjct: 419 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEGEGDSE-ALFDLGDMGAGPSAAQVRAGKLAA 477

Query: 156 W--QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           +   L      R  E++         L+D E  L +L   + D G   D  ++  L + +
Sbjct: 478 YLHPLASTLRSRLEESSEAAL-----LTDMEMPLSVLLGQMEDIGIAADTSVLNGLSDEL 532

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS-------EGTLKSILS 266
            +      E         +  S     L+  LF   G+     +          L  + +
Sbjct: 533 GKAVDAAREGAWAAAGREVNLS-SPKQLQELLFDHFGLPKTKKTKTGYTTNADALADLHA 591

Query: 267 HSNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            ++    A    L  L +    I     +++LS  V+SDGR+  T     A+ TGR +  
Sbjct: 592 KTSDEGGAGHDFLGFLLTHRDRIKLKQMVDSLSATVASDGRIHTTFSQVAAA-TGRLASS 650

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382
               QN+P +                              +R   +A  G + L+ AD +
Sbjct: 651 DPNLQNIPARSAD------------------------GMRIRGAFVAGEGFESLMSADYS 686

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++G++  I+AF +GED++ T  +  F TP+ +VS E+R+  K     L Y 
Sbjct: 687 QIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYG 746

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----------------- 481
               G A               ++ +       + +   A++                  
Sbjct: 747 LSSYGLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRYLPD 806

Query: 482 ----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACV 531
               +   ++     A+   + G+A ++VK A       +       +L   + +     
Sbjct: 807 LRSSNRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVE 866

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           V  G + +   +              + + +   R
Sbjct: 867 VAPGEAAAVEAIVRDRMATPVELSVPLDVAVGVGR 901


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 149/392 (38%), Gaps = 73/392 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           + D E  +  + + + D G  +D+  ++ +++  A E +   +  + + +  I + +   
Sbjct: 623 MVDVEMPVSRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVANKPI-NLQSPK 681

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+ + +  +  + A   +   L    +  LK
Sbjct: 682 QLQQLLFEDMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLK 741

Query: 292 --LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + +L ++    DGR+  T +   A+ TGR S      QN+P +               
Sbjct: 742 QIVQSLIDSARYEDGRIHTTFEQTIAA-TGRLSSSDPNLQNIPNR--------------- 785

Query: 349 RGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     +    +R+  I  N   +L+  D + +E R++A  + ++  IKAF +G D
Sbjct: 786 ---------NVVGREIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVD 836

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
            +    +  +  P+++VS +QR+  K M   L Y     G AK      +   +  +++ 
Sbjct: 837 FHKFVASLVYKIPVEQVSPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPAAAEVLKEKYF 896

Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   + +                     + +  S +   ++     A+   + G+A
Sbjct: 897 DTFGGVHDYLESLVDKARKLGYTQTMFGRRRYFPKLNSTNRASRESAERAALNAPIQGSA 956

Query: 503 CELVKKAW----------RAKHQGVLQLWKDL 524
            +++K A           + K + +LQ+  +L
Sbjct: 957 ADIMKLAMIQVDKDLREAKVKSRVILQIHDEL 988


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 148/402 (36%), Gaps = 73/402 (18%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +  K+   ++D E  +  + + + D G  +D+  +  + +  + + +       K+  
Sbjct: 605 TLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVAG 664

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNR 281
             + + +    L+  LF   G+     ++          L+++    +  + A   +   
Sbjct: 665 SSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGAL 723

Query: 282 LASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L    +  LK  + +L +A    D R+  T +   A+ TGR S      QN+P +     
Sbjct: 724 LKHRETNKLKQIVQSLIDAAHYDDRRIHTTFEQTIAA-TGRLSSADPNLQNIPNR----- 777

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397
                                A   +R+  I     + L+  D + +E R++A  + +  
Sbjct: 778 -------------------NAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKT 818

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I+AF +G D +    +  +  P+++V+ +QR+  K M   L Y     G AK      +
Sbjct: 819 LIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPA 878

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
              +   ++     +   + +                     + Q  S++   ++     
Sbjct: 879 EAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASREAAERG 938

Query: 493 AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
           A+   + GTA +++K A           + + + +LQ+  +L
Sbjct: 939 ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDEL 980


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 155/440 (35%), Gaps = 83/440 (18%)

Query: 163  CKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            C  D    R L     P+             E  +  +   +   G  +D   + +++E 
Sbjct: 605  CALDCAYLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQSRLEQMRES 664

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT--------LKSI 264
             + + ++  +   +     I + +    L+  LF   G+     ++          L+ +
Sbjct: 665  FSAQAEQAQQIAWQEAGKEI-NLQSPKQLQAVLFDDMGLTPTKKTKSGGRTTNAAALQEL 723

Query: 265  LSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
               S   + A   +   L       LK  + TL +A+   D R+  T +   A+ TGR S
Sbjct: 724  YMRSIHNERANAFLGALLRHREVNKLKQIVQTLIDAIDVRDSRIHTTFEQTVAA-TGRLS 782

Query: 322  GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380
                  QN+P +                         +    +R   +AS+G + L+ +D
Sbjct: 783  STDPNLQNIPNR------------------------NVEGREIRGAFVASDGFESLLSSD 818

Query: 381  LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
             + +E R++A ++G++  I+AF +G D +    +  +  PID++S +QR+  K M   L 
Sbjct: 819  YSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSDQRSHIKAMSYGLA 878

Query: 441  YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------W 475
            Y     G A+      +   +   ++         + +                     +
Sbjct: 879  YGLSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLESLVAQAKKRGYTETMFGRRRYF 938

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525
                S    ++D     A+   + G+A +++K A +  +Q           +LQ+  +L 
Sbjct: 939  PDLRSSRRQLRDAAERAALNAPIQGSAADIMKIAMKKAYQDLKDAGVKSRIILQIHDELV 998

Query: 526  EGFACVVQEGGSISARRVAN 545
               A   QE  +   +    
Sbjct: 999  VELAPGEQEQVTAMVKEAME 1018



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 602  VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSE-TPDTPYFSVGTLCSLM 651
            +Q  + DI+   MK         G    I+L +HDE+V E  P         +   M
Sbjct: 961  IQGSAADIMKIAMKKAYQDLKDAGVKSRIILQIHDELVVELAPGEQEQVTAMVKEAM 1017


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 148/402 (36%), Gaps = 73/402 (18%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +  K+   ++D E  +  + + + D G  +D+  +  + +  + + +       K+  
Sbjct: 595 TLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSSMLKQFSADAEFAQNMAWKVAG 654

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNR 281
             + + +    L+  LF   G+     ++          L+++    +  + A   +   
Sbjct: 655 SSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGAL 713

Query: 282 LASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L    +  LK  + +L +A    D R+  T +   A+ TGR S      QN+P +     
Sbjct: 714 LKHRETNKLKQIVQSLIDAAHYDDRRIHTTFEQTIAA-TGRLSSADPNLQNIPNR----- 767

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397
                                A   +R+  I     + L+  D + +E R++A  + +  
Sbjct: 768 -------------------NAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKT 808

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
            I+AF +G D +    +  +  P+++VS +QR+  K M   L Y     G AK      +
Sbjct: 809 LIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPA 868

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
              +   ++     +   + +                     + Q  S++   ++     
Sbjct: 869 EAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASREAAERG 928

Query: 493 AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524
           A+   + GTA +++K A           + + + +LQ+  +L
Sbjct: 929 ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDEL 970


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/550 (17%), Positives = 191/550 (34%), Gaps = 109/550 (19%)

Query: 14   QPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTE--------QSAMP--------S 55
              +   G+    +     I L   +  ++P  + D  +        +S +P         
Sbjct: 1224 VDIETTGL----DHNTNQIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVVPGRNELIKCE 1279

Query: 56   DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             L +  + +  + V HN  F+    +         +  I  +++A              +
Sbjct: 1280 WLKKLFKSKETVKVFHNGKFDINFLR---VYGFEFEGPIFDTMVASKL--------LVAS 1328

Query: 116  LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174
               S  LT + E              +  Y  +  + +Q ++    Y  RD      L+ 
Sbjct: 1329 RYISCKLTHVSE-----RYLNIVLDKTQQY--SDWSTLQLFEEQLLYSARDSFVLLPLYV 1381

Query: 175  --------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV- 225
                      L  ++  E    L    +   G ++D D +  LQ+ + QE +++   +  
Sbjct: 1382 ILEHLLKINNLSDIASVENKCILATSDMELNGIQVDEDKLKFLQDELKQEHQEISNTLYS 1441

Query: 226  KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            +L    I  + Q    +  L  +  + ++D S+  + S  S S + +   + I++ L   
Sbjct: 1442 QLNQSEINLNSQ----KQVLEKLQELKIMDKSKKKIISDTSESTLIRNMSNPIISSLREY 1497

Query: 286  GSAILKL----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              A   L      L   ++    R+       GA  +GR+S      Q +PR ++     
Sbjct: 1498 RKANKALTAFTQKLPNHINPITKRIYPNYNQLGA-ESGRFSCDGPNLQQVPRDKK----- 1551

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                    R C +A  G K V+AD + IE R+ A IA +   I+
Sbjct: 1552 -----------------------FRECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQ 1588

Query: 401  AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            A+    D++  T +   N  I+ V+KE+R + K +   L +       + M +  G +L+
Sbjct: 1589 AYQQKVDLHSLTASILKNKNINDVNKEERQLAKAVNFGLIFGMSINGLR-MYAETGYNLK 1647

Query: 461  QFSQNVKS--TSTFEDWEQAESHHLWMQDQYPEFA------------------VKDKLIG 500
                  K   TS F +++   + H  +++  P                     +   + G
Sbjct: 1648 LTQNEAKEIYTSFFNNFKGILNWHNSVKNSRPTMVRTLGNRLSVFESFSFTRSLNYPVQG 1707

Query: 501  TACELVKKAW 510
            T+ ++ K+  
Sbjct: 1708 TSADITKETM 1717


>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
 gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
          Length = 860

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 133/379 (35%), Gaps = 63/379 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L  +   +   G  ID  ++ KL    + +   L+E I KL+      +     L
Sbjct: 463 RIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSR-QL 521

Query: 242 RMYLFLITGIDLVDM----SEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLS 296
              LF   GI         +  T   +L       +   D IL     +       + L+
Sbjct: 522 STILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLA 581

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + + ++     T     ++ TGR S      QN+P +                       
Sbjct: 582 KQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRS---------------------- 619

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                + +R+  IA +G KL+ AD + IE R++A IA       AF+  +DI++ T  + 
Sbjct: 620 --EEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQI 677

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           FNT    + K+ R   K +   + Y     G AK      S     ++ + ++     ++
Sbjct: 678 FNT--QNIDKKLRRKAKSINFGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSY 735

Query: 473 -EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWR 511
            ED +     H + +  +                       AV   L GT+ +++K +  
Sbjct: 736 IEDIKVYARTHGYTRTVFGRKCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMI 795

Query: 512 ------AKHQGVLQLWKDL 524
                      +LQ+  +L
Sbjct: 796 HLFDRLKTGYMILQVHDEL 814



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 603 QAISRDILCEGMKNA---TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
           Q  S DI+   M +     K GY I L VHDE++ E P+     +V  +  +M
Sbjct: 783 QGTSADIIKMSMIHLFDRLKTGYMI-LQVHDELLFEVPEDHVDNTVKLIKEVM 834


>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
          Length = 865

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 133/379 (35%), Gaps = 63/379 (16%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L  +   +   G  ID  ++ KL    + +   L+E I KL+      +     L
Sbjct: 468 RIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSR-QL 526

Query: 242 RMYLFLITGIDLVDM----SEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLS 296
              LF   GI         +  T   +L       +   D IL     +       + L+
Sbjct: 527 STILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLA 586

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + + ++     T     ++ TGR S      QN+P +                       
Sbjct: 587 KQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRS---------------------- 624

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                + +R+  IA +G KL+ AD + IE R++A IA       AF+  +DI++ T  + 
Sbjct: 625 --EEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQI 682

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           FNT    + K+ R   K +   + Y     G AK      S     ++ + ++     ++
Sbjct: 683 FNT--QNIDKKLRRKAKSINFGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSY 740

Query: 473 -EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWR 511
            ED +     H + +  +                       AV   L GT+ +++K +  
Sbjct: 741 IEDIKVYARTHGYTRTVFGRKCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMI 800

Query: 512 ------AKHQGVLQLWKDL 524
                      +LQ+  +L
Sbjct: 801 HLFDRLKTGYMILQVHDEL 819



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 603 QAISRDILCEGMKNA---TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
           Q  S DI+   M +     K GY I L VHDE++ E P+     +V  +  +M
Sbjct: 788 QGTSADIIKMSMIHLFDRLKTGYMI-LQVHDELLFEVPEDHVDNTVKLIKEVM 839


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 153/423 (36%), Gaps = 73/423 (17%)

Query: 170  TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            T +  K+   ++D E  +  + + + D G  +D+  +  + +  + + +       K+  
Sbjct: 605  TLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVAG 664

Query: 230  GIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNR 281
              + + +    L+  LF   G+     ++          L+++    +  + A   +   
Sbjct: 665  SSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGAL 723

Query: 282  LASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
            L    +  LK  + +L +A    D R+  T +   A+ TGR S      QN+P +     
Sbjct: 724  LKHRETNKLKQIVQSLIDAAHYDDRRIHTTFEQTIAA-TGRLSSADPNLQNIPNR----- 777

Query: 339  ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397
                                 A   +R+  I     + L+  D + +E R++A  + +  
Sbjct: 778  -------------------NAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKT 818

Query: 398  KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
             I+AF +G D +    +  +  P+++V+ +QR+  K M   L Y     G AK      +
Sbjct: 819  LIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPA 878

Query: 454  HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
               +   ++     +   + +                     + Q  S++   ++     
Sbjct: 879  EAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASREAAERG 938

Query: 493  AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            A+   + GTA +++K A           + + + +LQ+  +L    +   QE      R+
Sbjct: 939  ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQEQVENIVRK 998

Query: 543  VAN 545
               
Sbjct: 999  AME 1001



 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M          K    ++L +HDE++ E        V  +  
Sbjct: 944 IQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQEQVENIVR 997


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/504 (17%), Positives = 169/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 453 VDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 513 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++G++  I+AF +G D +    +  +  P
Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 771

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 149/409 (36%), Gaps = 72/409 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           LSD E     +   +   G  +D   +  L + +  + ++  E  + +    +  S    
Sbjct: 527 LSDVEMPTAAVLAGMERVGIGVDSARLGALSDELGGDVERAREGALAVLGREVNLS-SPK 585

Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSILSHS-NITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++         L+ + + +        + + + LA      LK
Sbjct: 586 QLQEVLFEHFGLPRTRRTKTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLK 645

Query: 292 --LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +++L  +V+ DGR+  T     A+ TGR +      QN+P +                
Sbjct: 646 QMVDSLIASVADDGRIHTTFS-QVAAATGRLASADPNLQNIPARSAD------------- 691

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +A  G + L+ AD + IE R++A ++ ++  I AF +GED+
Sbjct: 692 -----------GMRIRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDL 740

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           + T  +  F TP+ +V+ +QR+  K     L Y     G +K             +++ +
Sbjct: 741 HRTMASMVFGTPVAEVTAQQRSRIKATSYGLAYGLSKYGLSKQLGIPVPEAAALRERYFE 800

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
                  + +    ++                      +   ++     A+   + G+A 
Sbjct: 801 RFGGVRDYLESLVDQARSRGYTETMYHRRRYLPDLGSDNRQRREMAERAALNAPIQGSAA 860

Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           +++K A             + + ++Q+  +L    A   +E    + R+
Sbjct: 861 DIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEVAPGERERVEEAVRQ 909


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/504 (17%), Positives = 169/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 448 VDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++G++  I+AF +G D +    +  +  P
Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 766

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/504 (17%), Positives = 169/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 453 VDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDLHFTETEQPSQGTLDFDDDQVEE 512

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 513 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++G++  I+AF +G D +    +  +  P
Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 771

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 892 TLAEAHVKSCIILQIHDELVVEIA 915



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A +   +      I+L +HDE+V E        V  L  
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIAPGEGDQVTELVR 927


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 97/270 (35%), Gaps = 31/270 (11%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D +  L  L   +  RG +I+   +  +   I ++ ++L + I  +       +     
Sbjct: 309 TDFDFPLAPLLFKMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIAGYNFNIA-SPAQ 367

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295
           L   LF+   +    + +G          + +L     +  L      + KL     + L
Sbjct: 368 LSDMLFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDAL 427

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + V  + RL  T        TGR S      QN+P +                      
Sbjct: 428 PKLVDKNYRLHTTFN-QDVVSTGRLSSTHPNLQNIPIRS--------------------- 465

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R+  IA     LV AD +  E R+ A +AG++  I  F N  DI+  T + 
Sbjct: 466 ---TLGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASD 522

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            +  P+D+V+  QR   KV+   + Y    
Sbjct: 523 VYKIPMDQVTSNQRRNAKVINFGVLYGMSP 552


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 448 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 448 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 453 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 513 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 771

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 448 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922


>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
 gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
          Length = 340

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 95/321 (29%), Gaps = 66/321 (20%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300
           F    I        T + + S   +  L     +         + KL     + L   ++
Sbjct: 2   FDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLLIN 61

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +      + TGR S      QN+P +                          
Sbjct: 62  PRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------------------------DE 96

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   I   G     AD + IE R++A ++ +   I AF +  DI+  T AK +  
Sbjct: 97  NGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKI 156

Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            +  V  + R   K     + Y     G A+            +  + +       + D 
Sbjct: 157 DLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDK 216

Query: 476 ---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                    S +  ++      A+   + G+A +++K A    +
Sbjct: 217 SIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIY 276

Query: 515 QG----------VLQLWKDLT 525
           Q           +LQ+  +L 
Sbjct: 277 QRFQAEGIQAKMILQVHDELN 297


>gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99]
 gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I
 gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 173/498 (34%), Gaps = 80/498 (16%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            K    + + + R   T +LA         +         E+L +       I  F   +
Sbjct: 413 LKAKYQVPLENIRIQDTQILAFLKNP----EKVGFDEVLKEYLKEDLIPHEKIKDF--KT 466

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRG 198
                     +  + A +   EY ++       L + L+ L+ D E     +   +  +G
Sbjct: 467 KSKAEKSELLSMELNALKRLCEYFEKG-----GLEEDLLTLARDIETPFVKVLMGMEFQG 521

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-- 256
           ++ID     +L++    E   L+  I+ L      +      L   L+   G+       
Sbjct: 522 FKIDAPYFKRLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYDKLGLPKNKSHS 580

Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
              +  LK +  H +I  + +   LN+L ++ +       L      D ++  T    G 
Sbjct: 581 TDEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG- 634

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NG 373
           + TGR S      QN+P                     +  P GL    +R   IAS   
Sbjct: 635 TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKE 670

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I K
Sbjct: 671 YCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAK 727

Query: 434 VMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE---------- 479
            +   L Y  G+K          S     ++ + +   S   + +  + E          
Sbjct: 728 SINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTL 787

Query: 480 ----------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDL 524
                       + +++  Y    V     G+A +L+K        R K+   ++L   +
Sbjct: 788 LGRYRVFDFTGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQV 847

Query: 525 TEGFACVVQEGGSISARR 542
            +     ++E  +   ++
Sbjct: 848 HDELIFEIEEKNAPELQQ 865


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 167/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 453 VDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E   RD+   R L   L P+ D     WL+            
Sbjct: 513 DP---------------NELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLK 616

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 771

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 167/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 453 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E   RD+   R L   L P+ D     WL+            
Sbjct: 513 DP---------------NELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 771

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 167/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 448 VDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E   RD+   R L   L P+ D     WL+            
Sbjct: 508 DP---------------NELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLK 611

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 65/382 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E+ L  +  ++   G  ID+D++  L    +++   L+ +I +L       +    
Sbjct: 542 YERVEKPLIRVLDSMEKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTEFNIASS-K 600

Query: 240 ALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQL-AKDLILNRLASSGSAILKLNT 294
            L   LF   GI            T   +L+     ++   D IL     +       + 
Sbjct: 601 QLGTVLFDKMGIKKSKKLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDA 660

Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L + ++S+ GR+  T     ++ TGR S      QN+P +                    
Sbjct: 661 LGKQINSNSGRIH-TFYSMISTATGRLSSSNPNLQNIPIRS------------------- 700

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   + +R   +A  G KLV AD + IE R++A IAG      AF   +DI+  T 
Sbjct: 701 -----EEGNAIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITA 755

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST 469
            + F T    + K  R   K +   + Y       AK      S     +  + ++    
Sbjct: 756 EQIFCT--QSLDKNLRRKAKSINFGIIYGMSAFGLAKQLGISRSEANAYIDNYFKSYPEI 813

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            ++ +                          S +   ++     A+   L GT+ +++K 
Sbjct: 814 QSYMNNIKIYAKTYGYTRTIFGRKCFIRDINSSNAAARNFSERAAINAPLQGTSADIIKM 873

Query: 509 AW------RAKHQGVLQLWKDL 524
           +             +LQ+  +L
Sbjct: 874 SMIHLFDKITHGSLILQVHDEL 895


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 125/677 (18%), Positives = 207/677 (30%), Gaps = 171/677 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--LQYL 61
           L ID ET         G+  ++++  + L   +    PV + D      +P     L+ L
Sbjct: 99  LAIDTET--------TGLDPHSDR--LRLIQISAPGIPVLVIDCAAF--LPDGFACLKEL 146

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPS-SLKNACLALNFS 119
            +     + HN+ F+       +GID       +  + L R  G P  +           
Sbjct: 147 LNTPSEKIFHNARFDLQFL-MGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADHYLG 205

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR--L 177
             L K E+  +  +    GS  +          + AW L   Y     +    L  R  L
Sbjct: 206 IKLDKTEQTGSWDSASLTGSQLAYA-------ALDAWILLKLY-----DVMNPLLARHGL 253

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI------ 231
              +  E             G  +DL+   +L+    ++     E +   +         
Sbjct: 254 GRTASIEFACVSAIARTEYDGINLDLEKWDELRRKTEKQYDAALETLYTYSGTPSCQLTL 313

Query: 232 --------IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                   +      Y L+  L    GI +   S  +L    S   +  L +        
Sbjct: 314 WGGEEALDVNFESNPYVLK--LLNRYGIPVTSTSRRSLAPYHSQPLVQALTEYR-----R 366

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S S    L+ +   +     RL       GA  +GR S      Q +PR+         
Sbjct: 367 HSKSLSSFLHPIPAQIHPVTHRLHPKYMQIGA-WSGRMSCYNPNIQQIPREAD------- 418

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 RSC  A +G+KL++AD + IE RV A I+G+     A 
Sbjct: 419 ---------------------FRSCFTAPDGRKLILADYSQIELRVAAQISGDSRMKSAC 457

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             GED++  T +   + P+ +V+K QR   K +   L +  GA+  K  A          
Sbjct: 458 QKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYAGQ-------- 509

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                        + V+  L     E  + A+   ++G+     
Sbjct: 510 ----------------------------SYGVEMTLE--EAEQFRSAFFQSYRGINWWHH 539

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           DL E       EG +++ R+    P   +                               
Sbjct: 540 DLRESHPL---EGRTLTGRKFLFSPNTGLAD----------------------------- 567

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETP- 637
                         L    VQ  + DIL   +         +   IV  VHDEI+ E P 
Sbjct: 568 --------------LANTPVQGTAADILKHALGLLASRIRGSDKKIVAIVHDEILMEVPV 613

Query: 638 DTPYFSVGTLCSLMTKN 654
           +    +V  L + M + 
Sbjct: 614 EEADDTVVLLKTAMEEA 630


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 126/401 (31%), Gaps = 66/401 (16%)

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             D+    E +     +   +  L      +   G  +D   ++     +     ++  +
Sbjct: 431 AEDLNEKIESYGMTDLMKTVDLPLLPALVRMEQAGVHLDGPAMVAFTAQLEASLDRVSGE 490

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS--EGTLKSILSHSNITQLAKDL-ILN 280
           I+    G I +      +   LF   G+ ++  +  +G    +     + +   D+  + 
Sbjct: 491 ILTYAGGPI-NLNSPKQVGELLFEKLGLPVIKRTAQKGYSTDVSVLETLCRSVGDICPVP 549

Query: 281 RLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            L      + K+ +       A S DG +  T +    + TGR S      QNLP     
Sbjct: 550 ALLLEHRELSKMLSGFAVPLAAASRDGVVHSTFEAQT-TGTGRLSSRDPNLQNLPN---- 604

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +  C+ A  G   V AD + IE RVLA ++GE 
Sbjct: 605 --------------------YSELGGQLCRCLTAGPGGVFVAADYSQIELRVLAHLSGER 644

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452
              + F  G DI+  T A     P D V+KEQR + K +   L Y       A       
Sbjct: 645 RLREIFEAGRDIHTETAAMILGIPADSVTKEQRRMAKTVTFGLLYGMSAFGLADRLSVGQ 704

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPE 491
           +     +  +   +     + D   AE+                          +     
Sbjct: 705 AEARGIMDAYFAALPGVREYVDATVAEARRRGYSQTAYGRIRPLDEVATGRQTDRGHARR 764

Query: 492 FAVKDKLIGTACELVKKAWR--------AKHQGVLQLWKDL 524
            A+   + GTA ++ K A          A    VLQ+   +
Sbjct: 765 VAINSPVQGTAADITKMAMITVDRELAAAGVPMVLQVHDSI 805



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594
           G   AR + +     +   +  V   +  +RR  YS    G    L+   +    +R + 
Sbjct: 703 GQAEARGIMDAYFAALPGVREYVDATVAEARRRGYSQTAYGRIRPLDEVATGRQTDRGHA 762

Query: 595 GKLTENI-VQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSE-TPDTPYFSVGTLC 648
            ++  N  VQ  + DI    M          G  +VL VHD IV   TP+        L 
Sbjct: 763 RRVAINSPVQGTAADITKMAMITVDRELAAAGVPMVLQVHDSIVCRTTPENAEPVGKKLA 822

Query: 649 SLMT 652
             MT
Sbjct: 823 EFMT 826


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 205/560 (36%), Gaps = 81/560 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAMPSDLLQ 59
           L +D ET         G+  Y++     L  +   +E    PV+L  R E+ A      Q
Sbjct: 38  LGLDTET--------TGLDIYSDGFRCRLVQFGTPNEAWVIPVELGPRYEEEA-----RQ 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALN 117
            LR+     V HN+ ++  + ++TLGI +     +   T +LA     P   K   +   
Sbjct: 85  ALRNVK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVD-PRPFKEGGIGHK 142

Query: 118 FSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             E +         E  K L+A   +    +  +  T+      +  +  Y   D     
Sbjct: 143 LEELVKHYIDAPVAENVKTLMATLAREYKTTKAHIWTKVEWTNPY--YQLYAGMDPILAA 200

Query: 172 ELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            L ++LIPL           E  L  +   +  RG+ +D++   KL E + +++      
Sbjct: 201 RLLQKLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASK 260

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L    + +      +   L +  G+ + + +EG                 ++L+RL 
Sbjct: 261 ADILYG--LENVNSPIQVAEAL-MRRGVKITERTEGGQPK----------VDKVLLDRLI 307

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQ 342
             G      + L+EA+S             A + G+W     +     R  +        
Sbjct: 308 KEG------DPLAEAISE------------AKKWGKWEKTWVRKFLDSRDSKDRCHASIN 349

Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            +QA     +I    A  L      VR C +A  G+ +   D    E RVLA ++G+   
Sbjct: 350 PLQARTARMSITGIPAQTLPSGDWLVRRCFLADEGELMASVDYQAQELRVLAALSGDRTM 409

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCG 456
           I+AF +G D+++ T   A+  P  +++K+  +R   K +     Y GGAK     A   G
Sbjct: 410 IQAFRDGADLHLMTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGAKTV---AEQTG 464

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           LD++   Q V          Q  S  L M+       +         +   +A+ A +  
Sbjct: 465 LDMEAAKQVVDGFDRAYPGVQKLSRKLQMEASQKGHIITPVGRRLPVDP-SRAYSALNYL 523

Query: 517 VLQLWKDLTEGFACVVQEGG 536
           +    +D+T      + E G
Sbjct: 524 IQSSSRDVTGRALIRLHEAG 543



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETP-DTPYFSVGTLCSLMTK 653
           ++Q+ SRD+    +    + G+   + L +HDEI++  P D   +    +  LM +
Sbjct: 523 LIQSSSRDVTGRALIRLHEAGFTRYLRLPIHDEILASVPADKAQWGAQEIARLMAE 578


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 88/497 (17%), Positives = 167/497 (33%), Gaps = 78/497 (15%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            K    + + + R   T +LA          +  L     E L   E+ K    +  K  
Sbjct: 421 LKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEDLIPHEKIKDFKTK-SKAE 479

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                     A             + D+         LI   D E     +   +  +G+
Sbjct: 480 KSEQLNMELNALKRLCEHFEKGGLEEDL---------LILARDIETPFMKVLMGMEFQGF 530

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM--- 256
           +ID     +L++    E   L+  I+ L      +      L   L+   G+        
Sbjct: 531 KIDAPYFKRLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGLPKNKSHST 589

Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
             +  LK +  H +I  + +   LN+L ++ +       L      D ++  T    G +
Sbjct: 590 DEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-T 643

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374
            TGR S      QN+P                     +  P GL    +R   IAS    
Sbjct: 644 ATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEY 679

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+  D + IE R+LA  + +   ++AF  G DI++ T    F    ++++KE+R+I K 
Sbjct: 680 CLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EELAKEKRSIAKS 736

Query: 435 MELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE----------- 479
           +   L Y  G+K          +     ++ + +   S   + +  + E           
Sbjct: 737 INFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLL 796

Query: 480 ---------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLT 525
                      + +++  Y    V     G+A +L+K        R K+   ++L   + 
Sbjct: 797 GRYRVFDFNGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVH 856

Query: 526 EGFACVVQEGGSISARR 542
           +     ++E  +   ++
Sbjct: 857 DELIFEIEEKNAPELQQ 873


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 81/408 (19%), Positives = 153/408 (37%), Gaps = 63/408 (15%)

Query: 168 EATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           E   +L ++   + +   E++   +   +  +G  I+ +   K    + ++ K ++  I 
Sbjct: 449 EVFMDLLEKENQLDIYLEEKEFTDVLIYMEKQGIAINQNYFEKYNLELEKKIKDIENKIY 508

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA----KDLILNR 281
            +  G   +      L   LF   GI+ V  ++    +      + +       +L+L  
Sbjct: 509 -IESGESFNISSPKQLGEVLFETMGIEGVKKNKRGYSTDAEVLELLRDRGIKIAELLLEY 567

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     +  L +  S +GR+  T    G + TGR S      QN+P         T
Sbjct: 568 RELVKLKSTYVEPLLKL-SINGRIHTTYNQTG-TATGRLSSSNPNLQNIP---------T 616

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           +T +                  +R   IAS G KLV  D + IE RVLA I+ ++  I A
Sbjct: 617 RTYEGTK---------------IREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINA 661

Query: 402 FANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456
           + +  D++  T  K F     +KVSK QR I KV+  ++ Y     G +K  K   S   
Sbjct: 662 YKHNLDLHELTARKIFMLKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAK 721

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495
           L +  + +         D    ++                      ++ +++Q    AV 
Sbjct: 722 LYINTYFKEYPKVRILLDDIIEKAKKDGYVETKFGTRRYVYDINSSNINIKEQAKRMAVN 781

Query: 496 DKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSIS 539
             + GTA  ++KK  +  +  +    +++   + +     V+E  +I 
Sbjct: 782 TVIQGTAANIIKKVMKEIYDKLCNDNVKMLLQVHDELIFEVREDINIF 829


>gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7]
 gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11]
          Length = 267

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 113/267 (42%), Gaps = 45/267 (16%)

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGT 501
           + GLDL + ++ +  T     W      + W + Q     P           + DK +  
Sbjct: 1   NLGLDLIEXAKTMAGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWR 60

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG---------------SISARRVANV 546
            C+ +K+ WR  H   +  W+DL +G    V+  G               +I   R   +
Sbjct: 61  TCDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTTEI 120

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYS------------------DVKGDCSYLNTATSQLM 588
                      + + LPS R L Y                   +V+      N  T Q  
Sbjct: 121 DSSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQWT 180

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
              T+GGK  ENIVQA  RD+L   M NA   GY IVL+VHDE+V ETPDTP ++V  L 
Sbjct: 181 TLYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAELE 240

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            LM   P WA+G PL AEG E KRY K
Sbjct: 241 KLMCALPEWAEGFPLVAEGAELKRYAK 267


>gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 833

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/496 (17%), Positives = 166/496 (33%), Gaps = 76/496 (15%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            K    + + + R   T +LA          +  L     E L   E+ K    +     
Sbjct: 349 LKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLQEDLILHEKIKDFKTK----- 403

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--LFKRLIPLSD-GERDLWLLDQTIND 196
                    +A  ++   L     KR  E   +  L + L+ L+   E     +   +  
Sbjct: 404 --------NKAEQLERLNLELNALKRLCEYFEKGGLEENLLSLARGIEMPFMKVLINMEF 455

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID     +L++    E K L+  I+ L      +      L   L+    +   + 
Sbjct: 456 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDF-NLNSPKQLGEVLYEKLNLP-KNK 513

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           S  T +  L        +  LIL     +  +      L      D ++  T    G + 
Sbjct: 514 SHSTDEKSLLKIMDKHPSISLILEYRELNKLSNTYTTPLLRLKDKDDKIHTTFIQTG-TA 572

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P +                              +R   I+S     
Sbjct: 573 TGRLSSHSPNLQNIPVRSSK------------------------GLLIRKGFISSSKEYC 608

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I K +
Sbjct: 609 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 665

Query: 436 ELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE------------ 479
              L Y  G+K          S     ++ + +   S   + +  + E            
Sbjct: 666 NFGLVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMREEILKTSKAFTLLG 725

Query: 480 --------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTE 526
                     + +++  Y    V     G+A +L+K        R K+   ++L   + +
Sbjct: 726 RYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNDSSVRLLLQVHD 785

Query: 527 GFACVVQEGGSISARR 542
                ++E  ++  ++
Sbjct: 786 ELIFEIEEKNALKLQQ 801


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 123/361 (34%), Gaps = 56/361 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L+  E  +  +   +   G  +  D + +    + +  +   E         + +     
Sbjct: 477 LTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTKVIENAQEQAFAAIGHEV-NLGSPK 535

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295
            L+  LF   G+      +    +  +                  +     KL     TL
Sbjct: 536 QLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKTGHEFLVQLMAHRESSKLAQMVETL 595

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            ++V+ D R+  T     A+ TGR S      QN+P +                      
Sbjct: 596 KKSVADDARIHTTYAQNIAA-TGRISSNNPNLQNIPVRS--------------------- 633

Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   VRS  + S G + L+ AD + IE R++A ++G+   I+A+ +GED++    A
Sbjct: 634 ---EEGRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHRFVGA 690

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + FN    +V+   R+  K M   L Y     G +K  +         ++ +     +  
Sbjct: 691 RIFNVEPAEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKDYYDRFGAVR 750

Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509
            + D  + ++                      +   ++     A+   + G+A +++K+A
Sbjct: 751 AYLDGVRDQARVDGYTATIEGRRRYLPDLTSTNRQAREAAERIALNSPIQGSAADIIKRA 810

Query: 510 W 510
            
Sbjct: 811 M 811


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/542 (16%), Positives = 180/542 (33%), Gaps = 107/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100
            L + L     +    N+ F+ +   + +G D+                  R   T +LA
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILA 429

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    LK             K  + KA         ++             A
Sbjct: 430 FLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELN-------------A 476

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++   
Sbjct: 477 LKRLCEYFEKG-----GLEENLLSLAREIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 531

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I++L      +      L   L+   G+          +  LK +  H +I
Sbjct: 532 NELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGLPKNKSHSTDEKSLLKILDKHPSI 590

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 591 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 644

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 645 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 680

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   ++AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 681 AHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLS 737

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   + +  + E                      + ++
Sbjct: 738 ETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYV 797

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  +   
Sbjct: 798 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPEL 857

Query: 541 RR 542
           ++
Sbjct: 858 QQ 859


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/542 (16%), Positives = 180/542 (33%), Gaps = 107/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100
            L + L     +    N+ F+ +   + +G D+                  R   T +LA
Sbjct: 371 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILA 430

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    LK             K  + KA         ++             A
Sbjct: 431 FLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELN-------------A 477

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++   
Sbjct: 478 LKRLCEYFEKG-----GLEENLLSLAREIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 532

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I++L      +      L   L+   G+          +  LK +  H +I
Sbjct: 533 NELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGLPKNKSHSTDEKSLLKILDKHPSI 591

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 592 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 645

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 646 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 681

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   ++AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 682 AHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLS 738

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   + +  + E                      + ++
Sbjct: 739 ETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYV 798

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  +   
Sbjct: 799 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPEL 858

Query: 541 RR 542
           ++
Sbjct: 859 QQ 860


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/562 (16%), Positives = 171/562 (30%), Gaps = 100/562 (17%)

Query: 38  DDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           D       D T    +P D   L ++L D     +  ++              +     I
Sbjct: 359 DGSRAVAIDLT--EILPEDEAVLARFLSDTDRPKLVADAKGSWHALSA---RGLTLDGVI 413

Query: 95  CTSVLARTNGLPSS------------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
               LA     P              L     A++ S        G++  A      +++
Sbjct: 414 ADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQANDGPGESQSAF----DLEA 469

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDV--EATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
              D   A H+ + +         V  +        +   +D E  +      + D G  
Sbjct: 470 LTSDAVPATHMASARRAAVLLPLQVVLDEQMAARDAVGLFTDLEMPVAATLTVMEDAGIA 529

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D D VL  +E     R     +      G   +      L+  LF    +     ++  
Sbjct: 530 VD-DAVLAARETELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTG 588

Query: 259 --------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                     L +  SH  +  L +     +L  +      +  L +A+ +DGR+  T Q
Sbjct: 589 YTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT------VEGLRKAIQADGRIHTTFQ 642

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A+ TGR S      QN+P +                              +R     
Sbjct: 643 QTIAA-TGRLSSTDPNLQNIPARH------------------------EEGMRIREAFTV 677

Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G   L+ AD + IE R++A ++G+   I+AF +GED++    A      +  V+ +QR
Sbjct: 678 GEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGDVTAQQR 737

Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---- 481
           +  K M   L Y     G A+      +        +         + +    ++     
Sbjct: 738 SHVKAMSYGLAYGLSTFGLARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQARRDGY 797

Query: 482 -----------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------ 518
                            +   ++     A+   + G+A ++VKKA       +       
Sbjct: 798 TETMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAADIVKKAMIDVDGALTEQGLSS 857

Query: 519 QLWKDLTEGFACVVQEGGSISA 540
           ++   + +     V  G + + 
Sbjct: 858 RILLQIHDELLIEVAPGEAAAV 879


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/506 (17%), Positives = 172/506 (33%), Gaps = 74/506 (14%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           D+E   + D  +    P  +  ++++  E    + HN  F+    K  L   I  K    
Sbjct: 53  DEENTFVIDLLK--INPEVVKNHIQNLIENKGIIGHNLKFDLKFLKTNLN--ILPKIVFD 108

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKM-----EEGKALIARFCKGSIDSPPYDCTRA 150
           T + ++      S +   L+ +    ++       ++            I+    D    
Sbjct: 109 TMIASQILAKGDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTL 168

Query: 151 NHVQAWQLFGEYCKRDVEA-----TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
            H+   +   +  + ++       T ++F  + P++  E         I   G  ID + 
Sbjct: 169 RHLFK-EEKNQLNQDNLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEE 227

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI- 264
             KL +    E +         T     S +Q      YL     I L    +G+  S  
Sbjct: 228 AKKLLKQKESEFQSDYMKFKIKTGADPFSPQQVVN---YLTNKLKIKLPKTEKGSFSSQD 284

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           +   +   + +  +L +L +    I K+  + +   ++ R+ G  +  GA+ TGR S   
Sbjct: 285 VFLKDYEDIEEVRLLLKLRADKKIIDKIKEILQFTRNE-RVYGEFKQIGAA-TGRMSSLR 342

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P+                               ++       G K +VAD + I
Sbjct: 343 PNLQNIPKN------------------------------LKYLFKPKEGYKFIVADYSQI 372

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+ A    ++  I AF  G+D++  T +       D+++KE+R + K +   L Y   
Sbjct: 373 ELRIAAQYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMS 432

Query: 445 AKVFKTMASH---CGLDLQQFSQ----NVKSTSTFEDWEQAESHHLWMQDQYP------- 490
            K     A       + LQ+  +      K   +F+DW      HL              
Sbjct: 433 PKSLVEYAKANYGVSISLQEAKKFHENYFKFYKSFKDWHDKVKEHLDKHRSIELETLLGR 492

Query: 491 -------EFAVKDKLIGTACELVKKA 509
                    AV   + G+  +L+K A
Sbjct: 493 KLIAYKFTDAVNYPIQGSGSDLLKMA 518


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           +D+     +  + LA     P    +            H T+ E+       F    ++ 
Sbjct: 180 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 239

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192
            P                E+  RD+   R L   L P+ D     WL+            
Sbjct: 240 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 284

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G ++D   ++ +++  A E ++  E   +     I + +    L+  LF   G+ 
Sbjct: 285 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 343

Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301
               ++          L+ +   S   + A   +   L       LK  + TL +A + S
Sbjct: 344 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 403

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T +   A+ TGR S      QN+P +                          A 
Sbjct: 404 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 438

Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +   G + L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P
Sbjct: 439 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 498

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D+++ +QR+  K M   L Y     G A+  K           ++         + +  
Sbjct: 499 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 558

Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515
            A +            +  +P                A+   + G+A +++K A     Q
Sbjct: 559 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 618

Query: 516 ----------GVLQLWKDLTEGFA 529
                      +LQ+  +L    A
Sbjct: 619 TLAEAHVKSRIILQIHDELVVEIA 642



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M  A            I+L +HDE+V E        V  L  
Sbjct: 601 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 654


>gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908]
          Length = 889

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/500 (18%), Positives = 173/500 (34%), Gaps = 86/500 (17%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            K    + + + R   T +LA         +         E+L +       I  F    
Sbjct: 407 LKAKYQVSLENIRIQDTQILAFLKNP----EKVGFDEALKEYLKEDLVSHEKIKDF---- 458

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVE--ATRELFKRLIPLS-DGERDLWLLDQTIND 196
                    +A  ++   +     KR  E   T  L + L+ L+ D E     +   +  
Sbjct: 459 -------KAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLARDIETPFVKVLMGMEF 511

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID   +  L++    E   L+  I+ L      +      L   L+   G+     
Sbjct: 512 QGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGLPKNKS 570

Query: 257 ----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                +  LK +  H +I  + +   LN+L ++ +       L      D ++  T    
Sbjct: 571 HSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQT 625

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS- 371
           G + TGR S      QN+P                     +  P GL    +R   IAS 
Sbjct: 626 G-TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 660

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
               L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I
Sbjct: 661 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSI 717

Query: 432 GKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-------- 479
            K +   L Y  G+K          S     ++ + +   S   + +  + E        
Sbjct: 718 AKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAF 777

Query: 480 ------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWK 522
                         + +++  Y    V     G+A +L+K        R K+   ++L  
Sbjct: 778 TLLGRYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLL 837

Query: 523 DLTEGFACVVQEGGSISARR 542
            + +     ++E  +   ++
Sbjct: 838 QVHDELIFEIEEKNAPELQQ 857


>gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018]
          Length = 889

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/500 (18%), Positives = 173/500 (34%), Gaps = 86/500 (17%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            K    + + + R   T +LA         +         E+L +       I  F    
Sbjct: 407 LKAKYQVSLENIRIQDTQILAFLKNP----EKVGFDEALKEYLKEDLVSHEKIKDF---- 458

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVE--ATRELFKRLIPLS-DGERDLWLLDQTIND 196
                    +A  ++   +     KR  E   T  L + L+ L+ D E     +   +  
Sbjct: 459 -------KAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLARDIETPFVKVLMGMEF 511

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID   +  L++    E   L+  I+ L      +      L   L+   G+     
Sbjct: 512 QGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGLPKNKS 570

Query: 257 ----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                +  LK +  H +I  + +   LN+L ++ +       L      D ++  T    
Sbjct: 571 HSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQT 625

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS- 371
           G + TGR S      QN+P                     +  P GL    +R   IAS 
Sbjct: 626 G-TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 660

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
               L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I
Sbjct: 661 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSI 717

Query: 432 GKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-------- 479
            K +   L Y  G+K          S     ++ + +   S   + +  + E        
Sbjct: 718 AKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAF 777

Query: 480 ------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWK 522
                         + +++  Y    V     G+A +L+K        R K+   ++L  
Sbjct: 778 TLLGRYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLL 837

Query: 523 DLTEGFACVVQEGGSISARR 542
            + +     ++E  +   ++
Sbjct: 838 QVHDELIFEIEEKNAPELQQ 857


>gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017]
          Length = 889

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/500 (18%), Positives = 173/500 (34%), Gaps = 86/500 (17%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            K    + + + R   T +LA         +         E+L +       I  F    
Sbjct: 407 LKAKYQVSLENIRIQDTQILAFLKNP----EKVGFDEALKEYLKEDLVSHEKIKDF---- 458

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVE--ATRELFKRLIPLS-DGERDLWLLDQTIND 196
                    +A  ++   +     KR  E   T  L + L+ L+ D E     +   +  
Sbjct: 459 -------KAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLARDIETPFVKVLMGMEF 511

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID   +  L++    E   L+  I+ L      +      L   L+   G+     
Sbjct: 512 QGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGLPKNKS 570

Query: 257 ----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                +  LK +  H +I  + +   LN+L ++ +       L      D ++  T    
Sbjct: 571 HSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQT 625

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS- 371
           G + TGR S      QN+P                     +  P GL    +R   IAS 
Sbjct: 626 G-TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 660

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
               L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I
Sbjct: 661 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSI 717

Query: 432 GKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-------- 479
            K +   L Y  G+K          S     ++ + +   S   + +  + E        
Sbjct: 718 AKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAF 777

Query: 480 ------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWK 522
                         + +++  Y    V     G+A +L+K        R K+   ++L  
Sbjct: 778 TLLGRYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLL 837

Query: 523 DLTEGFACVVQEGGSISARR 542
            + +     ++E  +   ++
Sbjct: 838 QVHDELIFEIEEKNAPELQQ 857


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/505 (18%), Positives = 164/505 (32%), Gaps = 72/505 (14%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI-DIPSKRWI 94
           D+E   + D  +    P  +  ++++  E    + HN  F+    K  L I        +
Sbjct: 52  DEENTFVIDLLK--INPEVVKNHIQNLIENKGIIGHNLKFDLKFLKTNLNILPKIVFDTM 109

Query: 95  CTSVLARTNGLPSSLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             S +            +  A  F S  + K  +     A+               A   
Sbjct: 110 IASQILAKGDNSQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRH 169

Query: 154 QAWQLFGEYCKRDVEA-----TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              +   +  + ++       T ++F  + P++  E         I   G  ID +   K
Sbjct: 170 LFKEEKNQLNQDNLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKK 229

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L +    E +         T     S  Q      YL     I L    +G+     S  
Sbjct: 230 LLKQKELEFQADYMKFKIKTGADPFSPLQVVN---YLTNKLKIKLPKTEKGSFS---SQD 283

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGASRTGRWSGCVF 325
              +  +D+   RL     A  K+    + +   + + R+ G  +  GA+ TGR S    
Sbjct: 284 VFLKDYEDIEEVRLLLKLRADKKIIDKIKEILQFTRNKRVYGEFKQIGAA-TGRMSSLRP 342

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P+                               ++       G K +VAD + IE
Sbjct: 343 NLQNIPKN------------------------------LKYLFKPKEGYKFIVADYSQIE 372

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+ A    ++  I AF  G+D++  T +       D+++KE+R + K +   L Y    
Sbjct: 373 LRIAAQYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSP 432

Query: 446 KVFKTMASH---CGLDLQQFSQ----NVKSTSTFEDWEQAESHHL--------------W 484
           K     A       ++LQ+  +      K   +F+DW      HL               
Sbjct: 433 KSLIEYAKANYGVSINLQEAKKFHENYFKFYKSFKDWHDRVKEHLDKHRFTTLETLLGRK 492

Query: 485 MQDQYPEFAVKDKLIGTACELVKKA 509
           +       AV   + G+  +L+K A
Sbjct: 493 LIAYKFTDAVNYPIQGSGSDLLKMA 517


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 123/375 (32%), Gaps = 68/375 (18%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D E  +      + D G  +D  ++   Q  +        E         +  S     
Sbjct: 544 TDLEMPVAATLTVMEDAGIAVDDAVLHARQTELDARVTHAAEGAYAAAGRELNLS-SPKQ 602

Query: 241 LRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           L+  LF    +     ++            L +  SH  +  L +     +L  +     
Sbjct: 603 LQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT----- 657

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L +A+ +DGR+  T Q   A+ TGR S      QN+P +                 
Sbjct: 658 -VEGLRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARH---------------- 699

Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R       G + L+ AD + IE R++A ++ +   I+AF +GED++
Sbjct: 700 --------EEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLH 751

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               A      ++ V+ +QR+  K M   L Y     G A+      +        +   
Sbjct: 752 RYVAALVHGIEVEDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGIDNAEAADLRNAYFAR 811

Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504
                 + +    ++                      +   ++     A+   + G+A +
Sbjct: 812 FGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAAD 871

Query: 505 LVKKAWRAKHQGVLQ 519
           +VKKA       + +
Sbjct: 872 IVKKAMIDVDSALRE 886


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/531 (15%), Positives = 165/531 (31%), Gaps = 83/531 (15%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118
           L D  V   AH+      +                 + LA     P   +   A LAL +
Sbjct: 14  LADADVPKAAHDVK---AVLHALRSRGWSLAGLTSDTALAAYLARPGQRTFDLADLALRY 70

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                + EE          G+ ++      +                 ++          
Sbjct: 71  LRRELRTEEPADGQLSLLGGADEADAQAAQQEM---LAASAIAELADALDTELAERGGTE 127

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            L+D E  L  +       G  +D + +  L+     + ++  ++  ++    I +    
Sbjct: 128 LLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIGKEI-NLGSP 186

Query: 239 YALRMYLFLITGIDLVDMSEGTLK------SILSHSNITQLAKDLILNRLASSGSAILKL 292
             L++ LF    +     ++            L      +  + L+ +R   +    + +
Sbjct: 187 KQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHR--DATRLKVTV 244

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L ++V+ DGR+  T     A+ TGR S      QN+P +                   
Sbjct: 245 DGLIKSVADDGRIHTTYSQTIAA-TGRLSSTDPNLQNVPIRT------------------ 285

Query: 353 IADPLGLASDCVRSCIIASNG------KKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                  A   +R   +   G       +L+ AD + IE R++A ++ ++  I+AF +  
Sbjct: 286 ------AAGRRIRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRSQH 339

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
           D +  T A+ F      VS EQRA  K M   L Y     G +   +         +  +
Sbjct: 340 DFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAYGLSAYGLSGQLRISTDEAKGLMDDY 399

Query: 463 SQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                    +                            S +   ++     A+   + G+
Sbjct: 400 FAGFGGVRDYLAGVVDQARKDGYTATILGRRRYLPDLTSDNRQRREMAERMALNAPIQGS 459

Query: 502 ACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           A +++K A             + + +LQ+  +L    A   +E      RR
Sbjct: 460 AADIIKVAMLGVRRALSAEGLRSRMLLQVHDELVLEVADGERETCEALVRR 510


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 121/375 (32%), Gaps = 68/375 (18%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           +D E  +      + D G  +D  ++   Q  +        E         +  S     
Sbjct: 543 TDLEMPVAATLTVMEDAGIAVDDAVLQIRQTELDARVTHAAEGAYAAAGRELNLS-SPKQ 601

Query: 241 LRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           L+  LF    +     ++            L +  SH  +  L +     +L  +     
Sbjct: 602 LQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT----- 656

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L +A+  DGR+  T Q   A+ TGR S      QN+P +                 
Sbjct: 657 -VEGLRKAIQPDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARH---------------- 698

Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R       G + L+ AD + IE R++A ++ +   I AF +GED++
Sbjct: 699 --------EEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIDAFRSGEDLH 750

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               A      ++ V+ +QR+  K M   L Y     G A+      +        +   
Sbjct: 751 RYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGIDNADAADLRNAYFAR 810

Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504
                 + +    ++                      +   ++     A+   + G+A +
Sbjct: 811 FGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAAD 870

Query: 505 LVKKAWRAKHQGVLQ 519
           +VKKA       + +
Sbjct: 871 IVKKAMIDVDSALTE 885


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/503 (16%), Positives = 173/503 (34%), Gaps = 90/503 (17%)

Query: 80  FKKTLGIDIPSKRWICTSVLAR-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
            K    + + + R   T +LA        G    LK             K  + K+ + +
Sbjct: 409 LKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKIKSKVEK 468

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQT 193
             +  ++           + A +   EY ++       L + L+ L+ + E     +   
Sbjct: 469 LEQLDME-----------LNALKRLCEYFEKG-----GLEENLLSLAKEVETPFVKVLMG 512

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G++ID     +L++    E   L+  I++L      +      L   L+    +  
Sbjct: 513 MEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLGEILYEKLKLPK 571

Query: 254 VDM----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                   +  LK +  H +I  + +   LN+L ++ +       L      D ++  T 
Sbjct: 572 NKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTF 626

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P +                              +R   I
Sbjct: 627 IQTG-TATGRLSSHSPNLQNIPVRS------------------------PKGLLIRKGFI 661

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           AS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+
Sbjct: 662 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEK 718

Query: 429 RAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE----- 479
           R+I K +   L Y  G+K          +     ++ + +   S   + +  + E     
Sbjct: 719 RSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTS 778

Query: 480 ---------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQ 519
                            + +++  Y    V     G+A +L+K        R K+   ++
Sbjct: 779 KAFTLLGRYRVFDFTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVR 838

Query: 520 LWKDLTEGFACVVQEGGSISARR 542
           L   + +     ++E  ++  ++
Sbjct: 839 LLLQVHDELIFEIEEKNALELQQ 861



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT 646
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +  
Sbjct: 808 VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 861


>gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51]
          Length = 885

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 183/532 (34%), Gaps = 85/532 (15%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114
            L + L     +    N+ F+ +   + +G D+     + + + A+    L +       
Sbjct: 362 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQVSLENIRIQDTQ 418

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L F ++  K+   + L         +  P++  +    ++     E   R++ A R L 
Sbjct: 419 ILAFLKNPEKVGFDEVLKEYL---KEEWIPHEKIKDFKTKSKAGKLEQLDRELNALRRLC 475

Query: 175 KR----------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +           L    + E     +   +  +G++ID     +L++    E   L+  I
Sbjct: 476 EYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQI 535

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNITQLAKDLILN 280
           ++L      +      L   L+    +          +  LK +  H +I  + +   LN
Sbjct: 536 LELIGADF-NLNSPKQLSEILYEKLELPKNKSHSTDEKSLLKILDKHPSIALILEYRELN 594

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L ++ +       L      D ++  T    G + TGR S      QN+P +       
Sbjct: 595 KLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRS------ 642

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   IAS     L+  D + IE R+LA  + +   +
Sbjct: 643 ------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 684

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHC 455
            AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K          S  
Sbjct: 685 DAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEA 741

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWMQDQYPEFAVK 495
              ++ + +   S   + +  + E                      + +++  Y    V 
Sbjct: 742 KSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREGVN 801

Query: 496 DKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
               G+A +L+K        R K+   ++L   + +     ++E  +   ++
Sbjct: 802 AIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQ 853


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 133/405 (32%), Gaps = 70/405 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  L  + + +   G  ID   + +  + +  E     +         +  S    
Sbjct: 529 LLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS-SPK 587

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNRLASSGSAILKLNT-- 294
            L+  LF    ++L    +           + +LA+      L  L      I  L    
Sbjct: 588 QLQEVLFTQ--LELPKTKKTKTGYTTDAKALEELARYNPHPFLEALLYHRDRIKLLQIVR 645

Query: 295 -LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L E V+ DGR+  T     A+ TGR S      QN+P +                    
Sbjct: 646 NLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIPART------------------- 685

Query: 354 ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                +    +R   +       L+ AD + IE R++A ++G++  + AFA+GED++ + 
Sbjct: 686 -----VDGQKIREAFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSV 740

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            A  +    D+V+  QR+  K     L Y     G A             +  + +    
Sbjct: 741 AALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAYGLAAQLNISQRDAKQLMDTYFERFGK 800

Query: 469 TSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              + +                       +  S +  + D     A+   + G+A +L+K
Sbjct: 801 VREYLNQIVATATRVGYTETMRGRRRYLPELRSTNRNVADNARRAALNAPIQGSAADLMK 860

Query: 508 KAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            A             + + +LQ+  +L    A    E      R+
Sbjct: 861 AAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLETLVRQ 905


>gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57]
          Length = 893

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/542 (16%), Positives = 182/542 (33%), Gaps = 105/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100
            L + L     +    N+ F+ +   + +G D+                  R   T +LA
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVSLEDIRIQDTQILA 429

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    LK             K  + K+   +    S++           + A
Sbjct: 430 FLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFKTKSKAGKLELLSVE-----------LNA 478

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++   
Sbjct: 479 LKRLCEYFEKG-----GLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 533

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I++L      +      L   L+   G+          +  LK +  H +I
Sbjct: 534 NELHVLERQILELIGVDF-NLNSPKQLSEILYEKLGLPKNKSHSTDEKSLLKILDKHPSI 592

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 593 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 646

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 647 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 683 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLS 739

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   + +  + E                      + ++
Sbjct: 740 ETLNIPLNEAKSYIEAYFKRFSSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYI 799

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  +   
Sbjct: 800 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPEL 859

Query: 541 RR 542
           ++
Sbjct: 860 QQ 861


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/400 (16%), Positives = 124/400 (31%), Gaps = 74/400 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L + E  L  + + +   G  ID   + +  + +  E     +         +  S    
Sbjct: 529 LLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS-SPK 587

Query: 240 ALRMYLFLITGIDL----------VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            L+  LF    +               +   L     H  +  L       +L       
Sbjct: 588 QLQEVLFTQLQLPKTKKTKTGYTTDAKALEELARYNPHPFLEALLYHRDRIKLLQIVRN- 646

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L E V+ DGR+  T     A+ TGR S      QN+P +                
Sbjct: 647 -----LRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIPART--------------- 685

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    +    +R   +       L+ AD + IE R++A ++G++  + AFA+GED+
Sbjct: 686 ---------VDGQKIREAFVPQKPYTALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDL 736

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           + +  A  +    D+V+  QR+  K     L Y     G A             +  + +
Sbjct: 737 HRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAYGLAAQLNISQRDAKQLMDTYFE 796

Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                  + +                       +  S +  + D     A+   + G+A 
Sbjct: 797 RFGKVREYLNQIVATATRVGYTETMQGRRRYLPELRSTNRNVADNARRAALNAPIQGSAA 856

Query: 504 ELVKKAWRAKHQGVLQ------LWKDLTEGFACVVQEGGS 537
           +L+K A       + Q      +   + +     V  G +
Sbjct: 857 DLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGET 896



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
           +Q  + D++   M     +         ++L VHDE+V E        +  L    MT
Sbjct: 851 IQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLEALVRQAMT 908


>gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8]
 gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8]
          Length = 893

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 135/395 (34%), Gaps = 70/395 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E     +   +  +G++ID+    +L++    E K L+  I+ L      +      L 
Sbjct: 502 VETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDF-NLNSPKQLG 560

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297
             L+   G+                 N+ ++        L      + KL       L  
Sbjct: 561 EVLYEKLGLP------KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLR 614

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
               D ++  T    G + TGR S      QN+P                     +  P 
Sbjct: 615 LKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP---------------------VRSPK 652

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
           GL    +R   IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    
Sbjct: 653 GL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKAL 709

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTF 472
           F    + ++KE+R+I K +   L Y  G+K          +     ++ + +   S   +
Sbjct: 710 FG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDY 766

Query: 473 EDWEQAE--------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
            +  + E                      + +++  Y    V     G+A +L+K     
Sbjct: 767 LNGMKEEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLK 826

Query: 511 ---RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              R K+   ++L   + +     ++E  +   ++
Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQ 861


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 124/367 (33%), Gaps = 68/367 (18%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            ++ E  +      + D G  +D D VL  +E+    R     +      G   +     
Sbjct: 496 YTELEMPVAACLAQMEDAGIAVD-DSVLAAREVELDARVTHAAEAAFAAAGHELNLSSPK 554

Query: 240 ALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            L+  +F    +     ++            L +   H  +  L +     +L  +    
Sbjct: 555 QLQAVIFDELKMPKTRRTKRGYTTDAEALAALYAKTGHPFLEHLLEHRDAIKLRQT---- 610

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L +AV +DGR+  T Q   A+ TGR S      QN+P +                
Sbjct: 611 --VEGLRKAVLADGRIHTTFQQTVAA-TGRLSSTDPNLQNIPART--------------- 652

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R       G + L+ AD + IE R++A ++G+   I AF +GED+
Sbjct: 653 ---------EEGMRIREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDL 703

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464
           +    A      +  V+ EQR+  K M   L Y     G A+      +        +  
Sbjct: 704 HRYVAAMVHGIDVADVTAEQRSHVKAMSYGLAYGLSTYGLARQLGIDNAEASALRDAYFA 763

Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503
              +   + +   A++                      +   ++     A+   + G+A 
Sbjct: 764 RFGAVHDYLESVVAQARRDGWTQTMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAA 823

Query: 504 ELVKKAW 510
           ++VKKA 
Sbjct: 824 DIVKKAM 830


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 120/680 (17%), Positives = 236/680 (34%), Gaps = 157/680 (23%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQYL-----RDETVMCVAHNSLF 75
           A +A I   +++  +             + +  P  ++Q+L      +  V+ +AHN  F
Sbjct: 44  AHKADIAGVSFSVSEGTAVYVPLKHKTGKNAGSPDKIMQWLSENVFANRKVVKIAHNLSF 103

Query: 76  ERILFKKTLGIDIPSK--RWICTSVL------ARTNGLPSSLKNACLAL---NFSEHLTK 124
           E +     LG+ +       I  +++      A      S LK     L   +       
Sbjct: 104 EAMFL-YALGVVLQPPCYDTIAAALMTLKSNTAFRTLADSGLKTLTQELFGVDLPS-FET 161

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +  G+           ++  Y C  +++  + + LF  +  R +   R + ++L      
Sbjct: 162 VTAGRYF-DELDPQDEETVRYACADSDYTLRLYHLFNNWFNRYLPKHRFIVEKL------ 214

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-IIRSSRQTYALR 242
           E    +    +   G   D +L+LK Q     +  +L  +I  L     I ++  T A +
Sbjct: 215 ESPAAVYCGLMKYNGLLADEELMLKKQAEAEGKLAELRGNIAFLIGDVNIGANASTSAFK 274

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNI----------TQLAK--DLILNRLASSGSAIL 290
            YL+    + +   +    +++   + I           +LA+  +L+            
Sbjct: 275 KYLYDDLKLPVFKTTAKYQEAMDDEAMILLSEWCRENRPELAELFELVQEYRRWGKIKST 334

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++   E ++S  GR+   +   G + TGR++      QN PR++               
Sbjct: 335 YIDGYLEYINSVTGRIHPDMFPLG-TETGRFAARNPNLQNCPRKD--------------- 378

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                DP+G     VR+  IA  GK L+  D + IE RV A+   ++  ++ +  G DI+
Sbjct: 379 ----NDPVG-----VRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLETYRTGGDIH 429

Query: 410 VTTYAKAFNTPIDK-------VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             T +  +  P ++         KE+RAI K     + Y               L  +  
Sbjct: 430 AQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFYG--------------LFPKGL 475

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            +N+K  +                       +   L  + CE +    +A +  ++Q W+
Sbjct: 476 HRNLKFKA----------------------GLDTPL--SECERIIANLKAGYPRLVQ-WQ 510

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           + T+  A                      R  +  +       RR    D+         
Sbjct: 511 EKTKKRAA-------------------SRRYTETWL------GRRRYLPDI--------- 536

Query: 583 ATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSET 636
           A+S   + +++  +   N  +Q  + DIL   +         +     VL +HDE+V E 
Sbjct: 537 ASSDWGK-KSFAERCALNTPIQGTAADILKLALGRIIEGLPQRMRLRPVLQIHDELVFEV 595

Query: 637 PDTPYFSVGT-LCSLMTKNP 655
           P+         + S M + P
Sbjct: 596 PEDKVHEAAVFIKSCMEERP 615


>gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12]
 gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12]
          Length = 903

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 163/504 (32%), Gaps = 94/504 (18%)

Query: 80  FKKTLGIDIPSKRWICTSVLAR-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
            K    + + + R   T +LA        G    L+             K  + KA    
Sbjct: 421 LKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLREYLKEELIPHEKIKDFKIKAEKLE 480

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQT 193
                ++             A +   EY ++       L + L+ L+ + E     +   
Sbjct: 481 LLSVELN-------------ALKRLCEYFEKG-----GLEENLLALAREIETPFVKVLMG 522

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G++ID     +L++    E   L+  I+ L      +      L   L+   G+  
Sbjct: 523 MEFQGFKIDAPYFKRLEQEFKNELNILECQILDLIGVDF-NLNSPKQLGEILYEKLGLP- 580

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGT 308
                          N+ ++        L      + KL       L      D ++  T
Sbjct: 581 -----KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTT 635

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
               G + TGR S      QN+P                     +  P GL    +R   
Sbjct: 636 FIQTG-TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGF 670

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE
Sbjct: 671 IASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKE 727

Query: 428 QRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE---- 479
           +R+I K +   L Y  G+K          S     ++ + +   S   + +  + E    
Sbjct: 728 KRSIAKSINFGLVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKT 787

Query: 480 ----------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVL 518
                             + +++  Y    V     G+A +L+K        R K+   +
Sbjct: 788 SKAFTLLGRYRVFDFNGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSV 847

Query: 519 QLWKDLTEGFACVVQEGGSISARR 542
           +L   + +     ++E  +   ++
Sbjct: 848 RLLLQVHDELIFEIEEKNAPELQQ 871


>gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
 gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
          Length = 893

 Score =  189 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 89/542 (16%), Positives = 181/542 (33%), Gaps = 105/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100
            L + L     +    N+ F+ +   + +G D+                  R   T +LA
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILA 429

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    LK             K  + K+ + +  +  ++           + A
Sbjct: 430 FLKNPEKVGFDGVLKEYLKEELIPHEKIKDFKTKSKVEKLEQLDME-----------LNA 478

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++   
Sbjct: 479 LKRLCEYFEKG-----GLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 533

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I+ L      +      L   L+    +          +  LK +  H +I
Sbjct: 534 NELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDKHPSI 592

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 593 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 646

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 647 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   ++AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 683 AHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLS 739

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   + +  + E                      +  +
Sbjct: 740 ETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGANDHI 799

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  +   
Sbjct: 800 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPEL 859

Query: 541 RR 542
           ++
Sbjct: 860 QQ 861


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/575 (17%), Positives = 182/575 (31%), Gaps = 109/575 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
           FID ET  P+               I L     +  P+ + D       P  +   +  +
Sbjct: 26  FIDTETT-PKD--------------IRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            V    HN  ++    K  +  DI       T V A+  GL      +       E + K
Sbjct: 71  GV--AGHNLKYD---LKYLMKYDIHPYTTFDTMVGAQLIGLNRVSLASVYNHFTGESIDK 125

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
            E+     ++    S             +   +L  E  K           R+  +   E
Sbjct: 126 KEQFSNWSSKELTESQIFYAAKDVEVLRLLYEKLKNELNKEPTIIEILQKSRVAKVFGLE 185

Query: 185 RDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
               +++         I   G  ID   +  +++ + ++ ++L  +        I S ++
Sbjct: 186 STYAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQKKTQELAMNFYIKYRIDISSPKK 245

Query: 238 TYALRMYLFLITGIDLVDMSEGTL-------------KSILSHSNITQLAKDLILNRLAS 284
                 +L     I L    +  +             ++  +   I+ + +   L++L  
Sbjct: 246 V---GEFLENHLNISLPRTDKDNIITDDSVLIEHLDYENEKAKDVISSVLEFRKLHKLQE 302

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
             S IL+ N        + R+       GA  TGR S      QN+PR            
Sbjct: 303 KLSEILEYN-------ENNRIHPEFWQIGAV-TGRMSSSRPNVQNIPR------------ 342

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +RS + A +G   V+AD + IE R+ A    ++  I     
Sbjct: 343 ------------------ELRSILKAKDGYVFVIADFSQIELRIAAEYVKDEVMIDIINK 384

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFS 463
           GED++  T +      ++ ++KE+R   K     L Y    K     A +  G+D+    
Sbjct: 385 GEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSLSLYARNSYGIDMSIEE 444

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYP--------------------EFAVKDKLIGTAC 503
                   F  ++  ++ H  ++ +                        A    + GT  
Sbjct: 445 AKRFREVFFSTFQGIKAWHERIKKELKAKGEIRLKTIGGKPMIAYTFTDAANYPIQGTGA 504

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           EL+K +       VL   ++L   F  +  E  ++
Sbjct: 505 ELLKLS-------VLIFSQELKRAFPSIFHEVANV 532


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/514 (15%), Positives = 178/514 (34%), Gaps = 75/514 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++L +  +    ++      L K     ++ +  +    ++A  +   + + +    +
Sbjct: 380 FEEFLNNPNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVVSDLSSQI 438

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAWQLFGEYCKRDVEA----- 169
              ++L ++E    +   F KG   +P  D         +   L  +Y  + +E      
Sbjct: 439 KLVDNLVELETIDEI---FGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +L+ ++      +  L  +   I  +G  ID + +    + I ++   ++  +  L  
Sbjct: 496 TYDLYLKI------DHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDLILNRLASS 285
             I ++        ++  LF    + L ++ +GT  K +L          +L+L     +
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITYHPIINLLLEHRKYT 607

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 L    + +  D ++      +  + TGR S      QN+  +            
Sbjct: 608 KLYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIR------------ 654

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR   I +N K  +  D + IE RVLA ++ E   I AF   
Sbjct: 655 ------------DNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQN 702

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI++      FN   D+++ EQR I KV    + Y     G A       +     ++ 
Sbjct: 703 ADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNISVNQAKQMIKD 762

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           +     S   F++ +   +                         ++      AV   + G
Sbjct: 763 YYSAFPSLLDFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPIQG 822

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           TA +++K A  + ++ + +  ++L     C + +
Sbjct: 823 TASDILKVAMISIYKKLKE--QNLDARIVCQIHD 854



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHD 630
            Y+N   S     R +G ++  N  +Q  + DIL   M +  K          IV  +HD
Sbjct: 795 RYINELNSTNHNIRQFGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHD 854

Query: 631 EIVSETPDTPYFSVGTLC 648
           EI+ E  D        + 
Sbjct: 855 EIILEVDDNQLEQTKKIV 872


>gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 887

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 135/391 (34%), Gaps = 60/391 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E     +   +  +G++ID     +L++    E K L+  I+ L      +      L
Sbjct: 495 EIEMPFMKVLMNMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDF-NLNSPKQL 553

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              L+    +   + S  T +  L        +  LIL     +  +   +  L      
Sbjct: 554 SGVLYEKLNLP-KNKSHSTDEKNLLKIMDKHPSIPLILEYRELNKLSNTYITPLLRLKDK 612

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D ++  T    G + TGR S      QN+P +                            
Sbjct: 613 DDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSSK------------------------G 647

Query: 362 DCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   I+S     L+  D + IE R+LA  + +   ++AF  G DI++ T    F   
Sbjct: 648 LLIRKGFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFG-- 705

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +  +KE+R+I K +   L Y  G+K          +     ++ + +   S   + +  
Sbjct: 706 -ENSAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNNM 764

Query: 477 QAE--------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----R 511
           Q E                      + +++  Y    V     G+A +L+K        R
Sbjct: 765 QEEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSER 824

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            K+   ++L   + +     ++E  ++  ++
Sbjct: 825 FKNDSSVRLLLQVHDELIFEIEEKNALELQQ 855



 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMT 652
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +      + 
Sbjct: 802 VNAIFQGSASDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALELQQEIQRIL 861

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
            N  +A  +PL+   + AKR+
Sbjct: 862 NNEVYALRVPLETSAFIAKRW 882


>gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27]
 gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27]
          Length = 905

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 132/396 (33%), Gaps = 70/396 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E     +   +  +G++ID      L++    E   L+  I+ L      +      L
Sbjct: 513 DIETPFMKVLMGMEFQGFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVDF-NLNSPKQL 571

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              L+   G+                 N+ ++        L      + KL       L 
Sbjct: 572 SEVLYEKLGLP------KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLL 625

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                D ++  T    G + TGR S      QN+P                     +  P
Sbjct: 626 RLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP---------------------VRSP 663

Query: 357 LGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
            GL    +R   IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T   
Sbjct: 664 KGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 720

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTST 471
            F      ++KE+R+I K +   L Y  G+K          S     ++ + +   S   
Sbjct: 721 LFG---GDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKD 777

Query: 472 FEDWEQAE--------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW- 510
           + +  + E                      + +++  Y    V     G+A +L+K    
Sbjct: 778 YLNRMKEEILKTSKAFTLLGRYRVFDFTGVNDYIKGNYLREGVNAIFQGSASDLLKLGML 837

Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
               R K+   ++L   + +     ++E  +   +R
Sbjct: 838 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPKLQR 873


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/514 (16%), Positives = 148/514 (28%), Gaps = 122/514 (23%)

Query: 152 HVQAW-QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            V+AW  L  E+  R+V   R     L  + D E    L+   +  RG   D   + +L 
Sbjct: 466 PVEAWYTLRVEHALREVLDER----TLGVMVDIEMPTLLVLVEMELRGVATDRAGLAELS 521

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
             + +    L +         I +      L+  LF   G+     ++    +       
Sbjct: 522 AQLQERITDLAQRAFAEIGKEI-NLGSPKQLQEVLFDQLGMPKTRANKTGFSTDAGALAD 580

Query: 271 TQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            Q +       L        KL     TL   +  D R+  T      + TGR S     
Sbjct: 581 LQASNPHPFLDLLLEHRDASKLRQIIQTLERGIGDDERIHTT-YVQTGTTTGRISSNDPN 639

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIE 385
            QN+P +                              +RS I    G   L+ AD + IE
Sbjct: 640 LQNIPVRT------------------------EEGRRIRSAIRVGEGYETLLTADYSQIE 675

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R++A ++G+   I+AFA GED++    ++ F      VS E R   K M   L Y   A
Sbjct: 676 MRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPADVSAEMRTKVKAMSYGLAYGLSA 735

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                ++    +   +  Q                    M D +  F             
Sbjct: 736 ---FGLSKQLRIPSSEAKQL-------------------MTDYFARFGA----------- 762

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                             + +    VV+E  +          R           ++  ++
Sbjct: 763 ------------------VRDYLRQVVEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNA 804

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------ 619
            R   +                              +Q  + DI+   M           
Sbjct: 805 ERAALNAP----------------------------IQGSAADIMKIAMIRIEADMRERD 836

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
               ++L VHDE++ E     + ++  +    M 
Sbjct: 837 MASRMLLQVHDELILEVAAGEWDALEAIVTDRMA 870


>gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32]
          Length = 893

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/541 (16%), Positives = 179/541 (33%), Gaps = 105/541 (19%)

Query: 57  LLQYLRDETVMCVAHNSLFERI---------------LFKKTLGIDIPSKRWICTSVLAR 101
           L + L     +    N+ F+ +                 K    + + + R   T +LA 
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHACIIGHDLKPLLSFLKANYQVPLENIRIQDTQILAF 430

Query: 102 -----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                  G    LK             K  + K+      K            +  + A 
Sbjct: 431 LKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKS------KAEKSEQ-----LSLELNAL 479

Query: 157 QLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++    
Sbjct: 480 KRLCEYFEKG-----GLEEGLLALAREVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKN 534

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNIT 271
           E   L+  I++L      +      L   L+    +          +  LK +  H +I 
Sbjct: 535 ELHVLERQILELIGVDF-NLNSPKQLSEILYEKLELPKNKSRSTDEKSLLKILDKHPSIA 593

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+P
Sbjct: 594 LILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP 647

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
            +                              +R   IAS     L+  D + IE R+LA
Sbjct: 648 VRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLLA 683

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK---- 446
             + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K    
Sbjct: 684 HFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSE 740

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWMQ 486
                 +     ++ + +   S   + +  + E                      + +++
Sbjct: 741 TLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIK 800

Query: 487 DQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
             Y    V     G+A +L+K        R K+   ++L   + +     ++E  ++  +
Sbjct: 801 GNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQ 860

Query: 542 R 542
           +
Sbjct: 861 Q 861



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT 646
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +  
Sbjct: 808 VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 861


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 138/421 (32%), Gaps = 78/421 (18%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           ++        L   +D E  +      + D G  +D D VL ++E     R     +   
Sbjct: 497 LDEQMADRDALGLFADLEMPVAATLTVMEDVGIAVD-DAVLAVRETELDARVTHAAEGAY 555

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKD 276
              G   +      L+  LF    +     ++            L +  SH  +  L + 
Sbjct: 556 AAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDAEALAGLYAKTSHPFLENLLEH 615

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               +L  +      +  L +A+ SDGR+  T Q   A+ TGR S      QN+P +   
Sbjct: 616 RDAIKLRQT------VEGLRKAIQSDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPAR--- 665

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGE 395
                                      +R       G + L+ AD + IE R++A ++G+
Sbjct: 666 ---------------------NEEGMRIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGD 704

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451
              I+AF +GED++    A      +D V+ +QR+  K M   L Y     G A+     
Sbjct: 705 QALIEAFRSGEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGIG 764

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490
            +        +         + +    ++                      +   ++   
Sbjct: 765 NAEAADLRNAYFARFGRVHDYLESVVEQARRDGYTQTMFGRRRYLPDLTSDNRQRREMAE 824

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISA 540
             A+   + G+A ++VKKA     +           +LQ+  +L    A    E      
Sbjct: 825 RAALNAPIQGSAADIVKKAMIDVDRALSEQGLSSRVLLQIHDELLVEVASAEVEAVETLL 884

Query: 541 R 541
           +
Sbjct: 885 K 885


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 140/395 (35%), Gaps = 68/395 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E     +   +  +G++ID     +L++    E K L+  I++L      +      L
Sbjct: 493 EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKDELKVLERQILELIGVDF-NLNSPKQL 551

Query: 242 RMYLFLITGIDLVDM----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              L+    +          +  LK +  H +I  + +   LN+L ++ +       L  
Sbjct: 552 SEVLYEKLELPKNKSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTT-----PLLR 606

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
               D ++  T    G + TGR S      QN+P +                        
Sbjct: 607 LKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRS----------------------- 642

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    
Sbjct: 643 -PKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKAL 701

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTF 472
           F     +++KE+R+I K +   L Y  G+K          +     ++ + +   S   +
Sbjct: 702 FG---GELAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDY 758

Query: 473 EDWEQAE--------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
            +  + E                      + +++  Y    V     G+A +L+K     
Sbjct: 759 LNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKGNYLREGVNAIFQGSASDLLKLGMLK 818

Query: 511 ---RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              R K+   ++L   + +     ++E  +   ++
Sbjct: 819 VSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQ 853


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 110/308 (35%), Gaps = 41/308 (13%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSS 235
           L + E  L  L   +   G  +D+D +  L+E          E       + T G+  + 
Sbjct: 526 LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNL 585

Query: 236 RQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAIL---K 291
                L+  LF    +     ++ G    + S  ++ +  +   L  L +   A      
Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT 645

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L E V+ D R+  T     A+ TGR S      QN+P +  +               
Sbjct: 646 VEGLLETVAPDDRIHTTYS-QTAAATGRLSSLHPNLQNIPVRTEA--------------- 689

Query: 352 TIADPLGLASDCVRSCIIA----SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                       +R   +A         L+ AD + IE R++A ++ ++  I+AF  GED
Sbjct: 690 ---------GRRIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGED 740

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463
           ++    ++ F    D+V+ EQRA  K M   L Y     G +K  K         ++ + 
Sbjct: 741 LHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF 800

Query: 464 QNVKSTST 471
                   
Sbjct: 801 DRFGGVPE 808


>gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52]
          Length = 889

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/542 (16%), Positives = 179/542 (33%), Gaps = 105/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERI---------------LFKKTLGIDIPSKRWICTSVLA 100
            L + L     +    N+ F+ +                 K    + + + R   T +LA
Sbjct: 366 PLEEALFSPFSLEFLQNAFFKMLQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILA 425

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    LK             K  + K+   +  +  ++           + A
Sbjct: 426 FLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKAGKLEQLDME-----------LNA 474

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++   
Sbjct: 475 LKRLCEYFEKG-----GLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 529

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I+ L      +      L   L+    +          +  LK +  H +I
Sbjct: 530 HELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPKNKSHSTDEKSLLKILDKHPSI 588

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 589 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 642

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 643 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 678

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 679 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLS 735

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  S     ++ + +   S   + +  + E                      +  +
Sbjct: 736 ETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGVNDHI 795

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+  +++L   + +     ++E  +   
Sbjct: 796 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPLVRLLLQVHDELIFEIEEKNAPEL 855

Query: 541 RR 542
           ++
Sbjct: 856 QQ 857


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/523 (17%), Positives = 172/523 (32%), Gaps = 113/523 (21%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           DDE   + D  E   + + L + + ++ V+   HN  F+       +   I       T 
Sbjct: 43  DDEKTYVIDLYEIHDI-TPLRELISEKGVI--GHNLKFD---LHYLMNYQIEPLATFDTM 96

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
           + +   G      N  +       L K                    Y  +         
Sbjct: 97  IASFLLGYERHSLNHLVGNLLGYTLDK-------------------SYQLSDWGAPVLSD 137

Query: 158 LFGEYCKRDVEATRELFKRLI---------------------------PLSDGERDLWLL 190
              +Y  +DV+  RELF +L                            P++  E      
Sbjct: 138 AQLKYAAKDVDVLRELFPKLRDMLNELEGERGEELLKTRTARIFGLKSPVAIVEMAFVKE 197

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  +D++ +    + I ++ +K  ++ +        S +Q   L   L     
Sbjct: 198 VAKLERNGLPVDIETLESTLKDIERKTQKKVQEFLIKFRVDPFSPKQVGQL---LTSKYK 254

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD---GRLRG 307
           ++L    +G +        ++  A  +   RL      + KL+   + +  +    RL  
Sbjct: 255 LNLPRTQKGNV--STDDKVLSSYA-HVEPVRLLLEIRKLKKLSDKFKEIKENLKGDRLYP 311

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
             +  GA  TGR S      QN+PR+E                              R+ 
Sbjct: 312 EFKQIGAV-TGRMSSLKPNVQNVPREE------------------------------RAI 340

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
             A  G   V+AD + IE R+ A    E+  I+AF  G+D++  T +       ++++KE
Sbjct: 341 FKAPEGNTFVIADFSQIELRIAAEYVNEELMIRAFREGKDLHRYTASLVLGKREEEITKE 400

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +R + K +   L Y   AK     A    G+++ +          F++++  +  H  ++
Sbjct: 401 ERQLAKAINFGLIYGISAKGLAEYARTGYGVEISEEEAETFRNRFFKNFKAFKLWHEKVK 460

Query: 487 DQYPEF--------------------AVKDKLIGTACELVKKA 509
            +  E                     AV   + GT  +L+K A
Sbjct: 461 KELKEKGVFRGRTLLGRRFTATTFNDAVNYPIQGTGADLLKLA 503


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/514 (15%), Positives = 178/514 (34%), Gaps = 75/514 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++L +  +    ++      L K     ++ +  +    ++A  +   + + +    +
Sbjct: 380 FEEFLNNSNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVVSDLSNQI 438

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAWQLFGEYCKRDVEA----- 169
              ++L ++E    +   F KG   +P  D         +   L  +Y  + +E      
Sbjct: 439 KLVDNLIELE---TIDQIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +L+ ++      +  L  +   I  +G  ID + +    + I ++   ++  +  L  
Sbjct: 496 TYDLYLKI------DHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDLILNRLASS 285
             I ++        ++  LF    + L ++ +GT  K +L          +L+L     +
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITYHPIINLLLEHRKYT 607

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 L    + +  D ++      +  + TGR S      QN+  +            
Sbjct: 608 KLYTTYLKGFEKFIFDDSKVHTIFN-HTLTNTGRLSSSYPNIQNISIR------------ 654

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR   I +N K  +  D + IE RVLA ++ E   I AF   
Sbjct: 655 ------------DNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQN 702

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI++      FN   D+++ EQR I KV    + Y     G A       +     ++ 
Sbjct: 703 ADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNISVNQAKQMIKD 762

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           +     S   F++ +   +                         ++      AV   + G
Sbjct: 763 YYSAFPSLLEFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPIQG 822

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           TA +++K A  + ++ + +  ++L     C + +
Sbjct: 823 TASDILKVAMISIYKKLKE--QNLDARIVCQIHD 854



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHD 630
            Y+N   S     R +G ++  N  +Q  + DIL   M +  K          IV  +HD
Sbjct: 795 RYINELNSTNHNIRQFGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHD 854

Query: 631 EIVSETPDTPYFSVGTLC 648
           EI+ E  D        + 
Sbjct: 855 EIILEVDDNQLEQTKRIV 872


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/537 (16%), Positives = 181/537 (33%), Gaps = 95/537 (17%)

Query: 56  DLLQYLRDETVMCVAHNSLFERI---------------LFKKTLGIDIPSKRWICTSVLA 100
            L + L     +    N+ F+ +                 K    + + + R   T +LA
Sbjct: 376 PLEEALFSPFSLEFLQNAFFKMLQHACIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILA 435

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                    +         E+L +       I  F   +          +  + A +   
Sbjct: 436 FLKNP----EKVGFDAVLKEYLKEDLIPHEKIKDF--KTTSKAEKSEQLSLELNALKRLC 489

Query: 161 EYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           EY ++       L + L+ L+   E     +   +  +G++ID     +L++    E K 
Sbjct: 490 EYFEKG-----GLEENLLSLARGVETPFVKVLMDMEFQGFKIDAPYFKRLEQEFKDELKV 544

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNITQLAK 275
           L+  I+ L      +      L   L+    +          +  LK +  H +I  + +
Sbjct: 545 LERQILDLIGVDF-NLNSPKQLSEVLYEKLELPQNKSHSTDEKNLLKILDKHPSIALILE 603

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              LN+L ++ +       L      D ++  T    G + TGR S      QN+P    
Sbjct: 604 YRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP---- 653

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                            +  P GL    +R   IAS     L+  D + IE R+LA  + 
Sbjct: 654 -----------------VRSPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQ 693

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKT 450
           +   ++AF  G DI++ T    F      ++KE+R+I K +   L Y  G+K        
Sbjct: 694 DKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKSINFGLVYGMGSKKLSETLNI 750

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWMQDQYP 490
             +     ++ + +   S   + +  + E                      + +++  Y 
Sbjct: 751 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYL 810

Query: 491 EFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              V     G+A +L+K        R K+   ++L   + +     ++E  ++  ++
Sbjct: 811 REGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 867



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT 646
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +  
Sbjct: 814 VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 867


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 115/560 (20%), Positives = 203/560 (36%), Gaps = 81/560 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAMPSDLLQ 59
           L +D ET         G+  Y++     L  +   +E    PV+L  R E+ A      Q
Sbjct: 38  LGLDTET--------TGLDIYSDDFRCRLVQFGTPNEAWVIPVELGPRYEEEA-----RQ 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALN 117
            LR+     V HN+ ++  + ++TLGI +     +   T +LA     P   K   +   
Sbjct: 85  ALRNVK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVD-PRPFKEGGIGHK 142

Query: 118 FSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             E +         E  K L+A   +    +  +  T+      +  +  Y   D     
Sbjct: 143 LEELVKHYIDANVAENVKTLMATLAREYKTTKAHIWTKVELTNPY--YQLYSGMDPILAA 200

Query: 172 ELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            L ++LIPL           E  L  +   +  RG+ +D++   KL E + +++      
Sbjct: 201 RLLQKLIPLVPAVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASK 260

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              L    + +      +   L +  G+ + + +E                  ++L+RL 
Sbjct: 261 ADILYG--LENVNSPIQVAEAL-MRRGVKIKERTETGQPK----------VDKVLLDRLI 307

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT-Q 342
             G      + L+EA+              A + G+W     +     R  +        
Sbjct: 308 KEG------DPLAEAI------------TEAKKWGKWEKTWVRKFLDSRDSKDRCHANIN 349

Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            +QA     +I    A  L      VR C +A  G+ +   D    E RVLA ++G+   
Sbjct: 350 PLQARTARMSITGIPAQTLPSGDWLVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTM 409

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCG 456
           I+AF +G D+++ T   A+  P  +++K+  +R   K +     Y GGAK     A   G
Sbjct: 410 IQAFKDGADLHLMTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGAKTV---AEQTG 464

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           LD++   Q V          Q  S  L  +       V  K      +   +A+ A +  
Sbjct: 465 LDMEAAKQVVDGFDRAYPGVQRLSAKLQREASQNGHIVTPKGRRLPVDP-SRAYSALNYL 523

Query: 517 VLQLWKDLTEGFACVVQEGG 536
           +    +D+T      + E G
Sbjct: 524 IQSTSRDVTGEALIRLHEAG 543


>gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16]
          Length = 893

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 84/503 (16%), Positives = 171/503 (33%), Gaps = 90/503 (17%)

Query: 80  FKKTLGIDIPSKRWICTSVLAR-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
            K    + + + R   T +LA        G    LK             K  + K+   +
Sbjct: 409 LKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKAGK 468

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQT 193
             +  ++           + A +   EY ++       L + L+ L+ + E     +   
Sbjct: 469 LEQLDME-----------LNALKRLCEYFEKG-----GLEEGLLALAREVETPFVKVLMG 512

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G++ID     +L++    E   L+  I++L      +      L   L+    +  
Sbjct: 513 MEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLELPK 571

Query: 254 VDM----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                   +  LK +  H +I  + +   LN+L ++ +       L      D ++  T 
Sbjct: 572 NKSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTF 626

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P +                              +R   I
Sbjct: 627 IQTG-TATGRLSSHSPNLQNIPVRS------------------------PKGLLIRKGFI 661

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           AS     L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+
Sbjct: 662 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEK 718

Query: 429 RAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE----- 479
           R+I K +   L Y  G+K          +      + + +   S   + +  + E     
Sbjct: 719 RSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTS 778

Query: 480 ---------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQ 519
                            + +++  Y    V     G+A +L+K        R K+   ++
Sbjct: 779 KAFTLLGRYRVFDFTGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVR 838

Query: 520 LWKDLTEGFACVVQEGGSISARR 542
           L   + +     ++E  ++  ++
Sbjct: 839 LLLQVHDELIFEIEEKNALELQQ 861



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT 646
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +  
Sbjct: 808 VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 861


>gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 827

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 88/542 (16%), Positives = 179/542 (33%), Gaps = 105/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERI---------------LFKKTLGIDIPSKRWICTSVLA 100
            L + L     +    N+ F+ +                 K    + + + R   T +LA
Sbjct: 304 PLEEALFSPFSLEFLQNAFFKMLQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILA 363

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    LK             K  + K+ + +  +  ++           + A
Sbjct: 364 FLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKVEKLEQLDME-----------LNA 412

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++   
Sbjct: 413 LKRLCEYFEKG-----GLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 467

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I+ L      +      L   L+    +          +  LK +  H +I
Sbjct: 468 NELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDKHPSI 526

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 527 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 580

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 581 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 616

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 617 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLS 673

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   + +  + E                      +  +
Sbjct: 674 ETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDRI 733

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  +   
Sbjct: 734 KGDYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPEL 793

Query: 541 RR 542
           ++
Sbjct: 794 QQ 795


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 142/425 (33%), Gaps = 73/425 (17%)

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            R +    +  ++   L   E  + ++   +   G  +D   +  L    A+E  +++  
Sbjct: 534 ARHLARELQQREQYALLRCIELPVSVVLYRMEQEGAAVDRMRLDSLLATFAEESGRMERM 593

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT------LKSILSHSNITQLAKDL 277
                      S     +   LF   G+  +  ++              ++N  + +   
Sbjct: 594 AWDAAGSEFNLS-SPKKIGKVLFEDMGLTPLRKTKSGHYTTNAATLTTLYANAEEGSAAY 652

Query: 278 ILNRLASSGSAILKLN----TLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +          + KL     TL +A++ +DG +  T +   A+ TGR S      QN+P 
Sbjct: 653 VFLGAILRHRGVNKLQQIVQTLIDAINRTDGHIHTTFEQTVAA-TGRLSSTDPNLQNIPN 711

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391
           +                               RS  I + G   L+ AD + +E R++A 
Sbjct: 712 R------------------------NAEGRDTRSAFIPAEGFDALLSADYSQVELRLMAD 747

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
            +G++  I AF +G D +    +  +  P+D +S +QR+  K M   L Y     G ++ 
Sbjct: 748 FSGDEALIDAFKSGADFHRYVASLVYGIPVDDISGDQRSHVKAMSYGLAYGLSSYGLSQQ 807

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486
                       QQ+ +       + +                     +    S +  ++
Sbjct: 808 LGITPKEADALKQQYFRTFGKVHEYLESLVATARERGYTETMFGRRRYFPALRSPNRMVR 867

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGG 536
           +     A+   + G+A +++K A     +           VLQ+  +L    A    E  
Sbjct: 868 EAAERAALNAPIQGSAADIMKMAMIRAERALRSQGMRSRIVLQIHDELVVQLAPGEHESA 927

Query: 537 SISAR 541
           +   +
Sbjct: 928 TALVK 932


>gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
 gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
          Length = 383

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 133/386 (34%), Gaps = 70/386 (18%)

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +  +G++ID+    +L++    E K L+  I+ L      +      L   L+   G+
Sbjct: 1   MGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGL 59

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLR 306
                            N+ ++        L      + KL       L      D ++ 
Sbjct: 60  P------KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIH 113

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T    G + TGR S      QN+P                     +  P GL    +R 
Sbjct: 114 TTFIQTG-TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRK 148

Query: 367 CIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++
Sbjct: 149 GFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLA 205

Query: 426 KEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479
           KE+R+I K +   L Y  G+K          +     ++ + +   S   + +  + E  
Sbjct: 206 KEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEIL 265

Query: 480 ------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQG 516
                               + +++  Y    V     G+A +L+K        R K+  
Sbjct: 266 KTSKAFTLLGRYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP 325

Query: 517 VLQLWKDLTEGFACVVQEGGSISARR 542
            ++L   + +     ++E  +   ++
Sbjct: 326 SVRLLLQVHDELIFEIEEKNAPELQQ 351


>gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20]
          Length = 893

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 89/542 (16%), Positives = 179/542 (33%), Gaps = 105/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERI---------------LFKKTLGIDIPSKRWICTSVLA 100
            L + L     +    N+ F+ +                 K    + + + R   T +LA
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHVQIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILA 429

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    LK             K  + K  + +  +  ++           + A
Sbjct: 430 FLKNPEKVGFDEVLKEYLKEELIPHETIKDFKTKNKVEKLEQLDME-----------LNA 478

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+   E  L  +   +  +G++ID     +L++   
Sbjct: 479 LKRLCEYFEKG-----GLEEGLLALARGVETPLMKVLMGMEFQGFKIDAPYFKRLEQEFK 533

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I+ L      +      L   L+    +          +  LK +  H +I
Sbjct: 534 NELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDKHPSI 592

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 593 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 646

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 647 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 683 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLS 739

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   + +  + E                      +  +
Sbjct: 740 ETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDHI 799

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  ++  
Sbjct: 800 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALKL 859

Query: 541 RR 542
           ++
Sbjct: 860 QQ 861


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 81/514 (15%), Positives = 178/514 (34%), Gaps = 75/514 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++L ++ +    ++      L K     ++    +    ++A  +   + + +    +
Sbjct: 380 FEEFLNNKNLKKYTYDIKKTTYLLKNH-QYNVLPSNFDFDFMVACYSLNANVVSDLSNQI 438

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAWQLFGEYCKRDVEA----- 169
                  ++E  + +   F KG   +P  D         +   L  +Y  + +E      
Sbjct: 439 KLVNQQEEIETNEII---FGKGVKKNPDIDIDIKSKYISKKAYLLKKYSDKLIEQLKQTN 495

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +L+ ++      +  L  +   I  +G  ID + +    E I ++   ++  +  +  
Sbjct: 496 TYDLYLKI------DYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDLILNRLASS 285
             I ++        ++  LF    + L ++ +GT  K +L          +L+L     +
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITFHPIINLLLEHRKYT 607

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 L    + +  D ++      +  + TGR S      QN+  +            
Sbjct: 608 KLYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIR------------ 654

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR   I +N K  +  D + IE RVLA ++ E   IKAF   
Sbjct: 655 ------------DNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQN 702

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI++      FN   ++++ EQR I KV    + Y     G A       +     ++ 
Sbjct: 703 ADIHLQAAKLIFNISDNQITSEQRRIAKVFNFGILYGLTDFGLANDLNMNVNQAKQMIKD 762

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           +     S   F++ +   + +                       ++      AV   + G
Sbjct: 763 YYSAFPSLLDFKEKQVEIATNQGYITTLSNRRRYISELNSTNHNIRQFGKRIAVNTPIQG 822

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           TA +++K A  + ++ + +  ++L     C + +
Sbjct: 823 TASDILKVAMISIYKKIKE--QNLDAKIVCQIHD 854



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT 618
           I          S+ +   S LN+        R +G ++  N  +Q  + DIL   M +  
Sbjct: 780 IATNQGYITTLSNRRRYISELNSTN---HNIRQFGKRIAVNTPIQGTASDILKVAMISIY 836

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           K          IV  +HDEI+ E  +        + 
Sbjct: 837 KKIKEQNLDAKIVCQIHDEIILEVDNNQLEQTKKIV 872


>gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5]
          Length = 124

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S  PL K GV+ Y E     I L AY+ D++PV++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNA 112
             L DE V+  A N+ FERI   + LG      +  + W C+ + + T GLP SL+  
Sbjct: 61  LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 56/303 (18%)

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----- 292
           T A+   L+    +     ++G       +  + +LA    L     S   + KL     
Sbjct: 5   TTAMGEVLYERLKLPHARKTKGKTGYSTDYRELERLAAYHDLPAAVISHRNLSKLKSTYV 64

Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L+  +   DGR+  T      + TGR S      QN+P +                  
Sbjct: 65  DKLATLIDPADGRVHTTFN-QTVTATGRLSSSNPNLQNIPIRT----------------- 106

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R+  +A+     + AD + I+ RVLA  +G+    +AFA+ +DI+  
Sbjct: 107 -------PEGRRLRAAFVAAAEHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHAR 159

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVK 467
           T A+ F      VS + R + K +   + Y       A+  +         + ++ +  +
Sbjct: 160 TAAEIFRVNQGLVSADMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQ 219

Query: 468 STSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELV 506
               F      ++                          ++     A+   + GTA +++
Sbjct: 220 GVHRFMQEIVEQARRDGWVGTLLQRRRPLPEINSGNKMRREFAERTAINTPIQGTAADII 279

Query: 507 KKA 509
           K A
Sbjct: 280 KLA 282



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 63/222 (28%), Gaps = 17/222 (7%)

Query: 445 AKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAESHHLWMQDQYPEFAVK--DKLIGT 501
            +     A+        +SQ +++  + +      +      QD +   A +      G 
Sbjct: 112 LRAAFVAAAEHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGL 171

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               +++  +  + G++               ++       R   + + V R  +  V  
Sbjct: 172 VSADMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQGVHRFMQEIVEQ 231

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                        +     +N+     MR            +Q  + DI+        + 
Sbjct: 232 ARRDGWVGTLLQRRRPLPEINSGNK--MRREFAERTAINTPIQGTAADIIKLAAIACDRA 289

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSV-----GTLCSLM 651
                   + +L +HDE++ E P      V       +  +M
Sbjct: 290 LREADCRSEALLQIHDELIFEVPQDELAQVGPLIRQAMEEVM 331


>gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A]
          Length = 893

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 87/545 (15%), Positives = 173/545 (31%), Gaps = 111/545 (20%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L + L     +    N+ F+ +   + +G D+                L S LK     
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP--------------LLSFLKA---- 411

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW------QLFGEYCK----R 165
             +   +  +      I  F K        +  +    + W      + F    K     
Sbjct: 412 -KYQVSVEDIRIQDTQILAFLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFKTKNKAEKLE 470

Query: 166 DVEATRELFKRLIPLSD--------------GERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +       KRL    +               E     +   +  +G++ID     +L++
Sbjct: 471 LLSVELNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGMEFQGFKIDAPYFKRLEQ 530

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSH 267
               E   L+  I++L      +      L   L+    +          +  LK +  H
Sbjct: 531 EFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLELPKNKSHSTDEKSLLKILDKH 589

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
            +I  + +   LN+L ++ +       L      D ++  T    G + TGR S      
Sbjct: 590 PSIALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNL 643

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386
           QN+P +                              +R   I+S     L+  D + IE 
Sbjct: 644 QNIPVRS------------------------PKGLLIRKGFISSSKEYCLLGVDYSQIEL 679

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K
Sbjct: 680 RLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSK 736

Query: 447 ----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHH 482
                     +     ++ + +   S   + +  + E                      +
Sbjct: 737 KLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGVN 796

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGS 537
             ++  Y    V     G+A +L+K        R K+   ++L   + +     ++E  +
Sbjct: 797 DHIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNA 856

Query: 538 ISARR 542
           +  +R
Sbjct: 857 LELQR 861


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 148/475 (31%), Gaps = 68/475 (14%)

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALI 132
           + FER          +   +    ++      +     +  +A          +   AL+
Sbjct: 382 APFERW-LASDAPKVMSDAKVQVKAMRRAGLRVQGLAFDVLVAGWLLRPGFTDKSLAALV 440

Query: 133 ARFCKGSIDSP------PYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLSDGER 185
           +R+    +  P      P        V+AW  L  E+  R+V   R     L  + D E 
Sbjct: 441 SRYLMEDLPEPDANQLVPETEALTAPVEAWYTLRVEHALREVLDER----TLGVMVDIEM 496

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
              L+   +  RG   D   + +L   + +    L E         I +      L+  L
Sbjct: 497 PTLLVLVEMELRGVATDRAGLAELSAQLQERITGLAERAFAEIGKEI-NLGSPKQLQEVL 555

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSS 301
           F   G+     ++    +        Q +       L        KL     TL   +  
Sbjct: 556 FDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLRQIIQTLERGIGD 615

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+  T      + TGR S      QN+P +                            
Sbjct: 616 DERIHTT-YVQTGTTTGRISSNDPNLQNIPVRT------------------------EEG 650

Query: 362 DCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +RS I    G   L+ AD + IE R++A ++G+   I+AF  GED++    +  F   
Sbjct: 651 RRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFGVE 710

Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
              VS   R   K M   L Y     G +K  +  +S     +  +     +   +    
Sbjct: 711 PADVSPAMRTKVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQLMTDYFARFGAVRDYLRQV 770

Query: 477 QAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             E+                      +  ++D     A+   + G+A +++K A 
Sbjct: 771 VEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNAERAALNAPIQGSAADIMKIAM 825


>gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30]
          Length = 893

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/532 (16%), Positives = 184/532 (34%), Gaps = 85/532 (15%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114
            L + L     +    N+ F+ +   + +G D+     + + + A+    L +       
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQVSLENIRIQDTQ 426

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L F ++  K+   + L         +   ++  +    ++     E   R++ A + L 
Sbjct: 427 ILAFLKNPEKVGFDEVLKEYL---KEEWILHEKIKDFKTKSKAEKSEQLDRELNALKRLC 483

Query: 175 KR---------LIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +          L  L+ + E     +   +  +G++ID     +L++    E   L+  I
Sbjct: 484 EYFEKGGLEEGLFALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQI 543

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNITQLAKDLILN 280
           ++L      +      L   L+    +          +  LK +  H +I  + +   LN
Sbjct: 544 LELIGVDF-NLNSPKQLSEILYEKLELPKNKSHSTDEKNLLKILDKHPSIALILEYRELN 602

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           +L ++ +       L      D ++  T    G + TGR S      QN+P +       
Sbjct: 603 KLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRS------ 650

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   IAS     L+  D + IE R+LA  + +   +
Sbjct: 651 ------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 692

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHC 455
            AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K          +  
Sbjct: 693 DAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEA 749

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWMQDQYPEFAVK 495
               + + +   S   + +  + E                      + +++  Y    V 
Sbjct: 750 KSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREGVN 809

Query: 496 DKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
               G+A +L+K        R K+   ++L   + +     ++E  ++  ++
Sbjct: 810 AIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 861



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT 646
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +  
Sbjct: 808 VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 861


>gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
 gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
          Length = 891

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 139/395 (35%), Gaps = 68/395 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E     +   +  +G++ID     +L++    E   L+  I++L      +      L
Sbjct: 499 EVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGADF-NLNSPKQL 557

Query: 242 RMYLFLITGIDLVDM----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              L+    +          +  LK +  H +I  + +   LN+L ++ +       L  
Sbjct: 558 SEILYEKLELPQNKSRSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTT-----PLLR 612

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
               D ++  T    G + TGR S      QN+P +                        
Sbjct: 613 LKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRS----------------------- 648

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   IAS     L+  D + IE R+LA  + +   + AF  G DI++ T    
Sbjct: 649 -PKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKAL 707

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTF 472
           F    + ++KE+R+I K +   L Y  G+K          +     ++ + +   S   +
Sbjct: 708 FG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDY 764

Query: 473 EDWEQAE--------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
            +  + E                      + +++  Y    V     G+A +L+K     
Sbjct: 765 LNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLK 824

Query: 511 ---RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              R K+   ++L   + +     ++E  ++  ++
Sbjct: 825 VSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 859



 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT 646
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +  
Sbjct: 806 VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 859


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/503 (16%), Positives = 158/503 (31%), Gaps = 92/503 (18%)

Query: 80  FKKTLGIDIPSKRWICTSVLAR-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
            K    + + + R   T +LA        G    LK             K  + KA    
Sbjct: 407 LKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLE 466

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                +++    C         + F +      E    L K      + E     +   +
Sbjct: 467 LLSVELNALKRLC---------EYFEKGGLE--EGLLALAK------EIETPFMKVLMGM 509

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G++ID     +L++    E   L+  I+ L      +      L   L+    +   
Sbjct: 510 EFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEVLYEKLELP-- 566

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTL 309
                         N+ ++        L      + KL       L      D ++  T 
Sbjct: 567 ----KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTF 622

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P                     +  P GL    +R   I
Sbjct: 623 IQTG-TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 657

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           AS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+
Sbjct: 658 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEK 714

Query: 429 RAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE----- 479
           R+I K +   L Y  G+K          +     ++ + +   S   + +  + E     
Sbjct: 715 RSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTS 774

Query: 480 ---------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQ 519
                            + +++  Y    V     G+A +L+K        R K+   ++
Sbjct: 775 KAFTLLGRYRVFDFNGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVR 834

Query: 520 LWKDLTEGFACVVQEGGSISARR 542
           L   + +     ++E  +   ++
Sbjct: 835 LLLQVHDELIFEIEEKNAPELQQ 857


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 107/733 (14%), Positives = 217/733 (29%), Gaps = 194/733 (26%)

Query: 7    DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-------RTEQSAMPS 55
            D ET S       L  +G            C +  + E V             ++  +  
Sbjct: 386  DTETTSLEPRDAELVGIG------------CCWGKNMEDVAYIPTGHKTDKNLDKVTVLE 433

Query: 56   DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
             L   L       V  NS F+R++F +  GI +    +  T + +      +      + 
Sbjct: 434  SLKPVLESSEYPKVFQNSKFDRLVF-RCQGIKLTGV-FFDTMLASYVLNPEAKHSLEEIY 491

Query: 116  LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--- 172
            + +  ++    +    +    +   D            Q W  F    K   E  +    
Sbjct: 492  IRYLRNVGINLQSYQDVVSKNQTIADLDILKVADYCGTQVWVTFQLVEKLRTELEKADKN 551

Query: 173  -------------LFKRLIPLS-DGERDLWLLD---------------QTINDRGYR--- 200
                         + + L P+  + E     +D               + I  R ++   
Sbjct: 552  KSTEKSLYRLLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIEKRAFKTVD 611

Query: 201  ---------------------------------IDLDLVLKLQELIAQERKKLDEDIVKL 227
                                             I    + KL +   Q  + ++  I ++
Sbjct: 612  SQVLQKYLQTEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLENIESQINQV 671

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLAS 284
                + +      L   LF I   +      +  G    +++   +    +   +     
Sbjct: 672  ETRDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEPEHHPIIDEIL 731

Query: 285  SGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
            +   + KL       +   V SD  R+         + TGR S      QN+P   +   
Sbjct: 732  NHRTLYKLFSTYVEAIPRLVRSDTQRVHTNFN-QTQTDTGRLSSSEPNLQNIPIGTK--- 787

Query: 339  ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                  S  +R   +      LV AD + IE R+LA ++ E   
Sbjct: 788  ---------------------FSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVL 826

Query: 399  IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            I+A+ N +D++  T    F    +++S E+R +GK +   + Y  GA+    +A    + 
Sbjct: 827  IEAYKNNQDVHTVTAKLLFEK--EEISSEERRVGKTINFGVIYGMGAQ---KLARSVKIT 881

Query: 459  LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
            +++  Q ++     + +    ++   ++ Q       + ++G      ++ +       +
Sbjct: 882  VKESKQFLE--KYKQQYSLVFAYLEKLKKQAIAKGYVETILG------RRRYFELESKTI 933

Query: 519  QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
            +  KD         +E   I+ + +                                   
Sbjct: 934  RDLKD---------KEPEEINLQELKFS-------------------------------- 952

Query: 579  YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVS 634
                  +Q++R            +Q  S DI+   M    K    Y   ++L VHDE+V 
Sbjct: 953  ---QNDAQILRSAANSP------IQGSSADIIKIAMIRLNKILTNYQTKLLLQVHDELVF 1003

Query: 635  ETPDTPYFSVGTL 647
            E P +    +  L
Sbjct: 1004 EVPPSELEKMQQL 1016


>gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
 gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
          Length = 893

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/542 (16%), Positives = 180/542 (33%), Gaps = 105/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100
            L + L     +    N+ F+ +   + +G D+                  R   T +LA
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILA 429

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    ++             K  + K+ + +  +  ++           + A
Sbjct: 430 FLKNPEKVGFDEVVREYLKEELIPHETIKDFKTKSRVEKLEQLDME-----------LNA 478

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+ + E     +   +  +G++ID     +L++   
Sbjct: 479 LKRLCEYFEKG-----GLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 533

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I+ L      +      L   L+    +          +  LK +  H +I
Sbjct: 534 DELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDKHPSI 592

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 593 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 646

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 647 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 683 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLS 739

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   + +  + E                      +  +
Sbjct: 740 ETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDHI 799

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  +   
Sbjct: 800 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPEL 859

Query: 541 RR 542
           ++
Sbjct: 860 QQ 861


>gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 300

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 135/278 (48%), Gaps = 43/278 (15%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           L DM + T++  L    + +  ++L+  R  +S ++  K   L    S DGRLRGTLQF 
Sbjct: 13  LPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQFN 72

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCII 369
           GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D + L S  +RSC+I
Sbjct: 73  GASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLI 132

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------------------- 402
           A   KKLVVADL+ IE RVLAW+AGE  K++AF                           
Sbjct: 133 APTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGALRGA 192

Query: 403 -------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
                          G+DIY   YA +F      V+K+QR IGKV ELALGY GG   F 
Sbjct: 193 PITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFA 252

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
             A+   +DL+  ++        +   +   H   ++ 
Sbjct: 253 AFAAMYHIDLEAMAEQAALPPLLDTAARPFPHMKLLRR 290


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 147/440 (33%), Gaps = 79/440 (17%)

Query: 152 HVQAWQLFGEYC-KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           H +  +L+ + C     E    L+ +       ++ L    + +   G  +D++ +L L 
Sbjct: 395 HKRLNELYEKLCNAMFTEKVLTLYYK------VDKPLINAIKHMEKNGISLDVEQLLSLS 448

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
             I+ + ++++  I  +      S +    L   LF    I +    +  L S   +  +
Sbjct: 449 TQISGKLEEIESKIFDIAGKTF-SLQSPKQLGKVLFEEMQIPVQKKLKSGLSST-DNEVL 506

Query: 271 TQL------AKDLILNRLASSGSAILKLNTLSEAVSSDGRLR--GTLQFYGASRTGRWSG 322
           T L        D +L+           ++ L   V+ +       T      + TGR S 
Sbjct: 507 TSLSIQGYEIADYLLSWRHYIKLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSS 566

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+PR++                             +R    A  G   + AD +
Sbjct: 567 SNPNLQNIPREKE----------------------------IRKIFTAKEGHHFLCADYS 598

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA+IA  +    A A+G D++  T ++ F T  DK++ + R   K +   + Y 
Sbjct: 599 QIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DKITPDLRNKAKAVNFGIVYG 656

Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------- 488
               G +K            +Q++         + +  + ++                  
Sbjct: 657 ITNFGLSKQLAISKEEAASYIQKYFDEYPEIKIYMNHIRNQARKDTYVKTMMNRKCPIQN 716

Query: 489 -----------YPEFAVKDKLIGTACELVKKAWRAKHQG-------VLQLWKDLTEGFAC 530
                          A+   + GTA ++++ A     Q        V+Q+  +L      
Sbjct: 717 INSNNRTISLVAERSAINAPIQGTAADIIRTAMVRMAQEKELLSHMVMQVHDELVFELET 776

Query: 531 VVQEGGSISARRVANVPRLV 550
            V +  +   +R+      +
Sbjct: 777 DVIQQLAKKIKRIMEESHGI 796



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 35/231 (15%)

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN+           A+  H ++   Y +  ++        E +K A  +           
Sbjct: 572 QNIPREKEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQ 631

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP--SSRRLVYSDVKGDCSYLN 581
           + +             A     V  +      + + I     +S    Y D   +     
Sbjct: 632 IFKTDKITPDLRNKAKAVNFGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIKIYM 691

Query: 582 TATSQLMRERTYGGKL------TENI-------------------VQAISRDILCEGMKN 616
                  R+ TY   +       +NI                   +Q  + DI+   M  
Sbjct: 692 NHIRNQARKDTYVKTMMNRKCPIQNINSNNRTISLVAERSAINAPIQGTAADIIRTAMVR 751

Query: 617 ATKNGY---DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPL 663
             +       +V+ VHDE+V E        +   +  +M ++     G+PL
Sbjct: 752 MAQEKELLSHMVMQVHDELVFELETDVIQQLAKKIKRIMEES----HGIPL 798


>gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180]
 gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180]
          Length = 897

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/503 (17%), Positives = 170/503 (33%), Gaps = 92/503 (18%)

Query: 80  FKKTLGIDIPSKRWICTSVLAR-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
            K    + + + R   T +LA        G    LK             K  + KA    
Sbjct: 415 LKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLE 474

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQT 193
                ++             A +   EY ++       L + L+ L+   E     +   
Sbjct: 475 LLSVELN-------------ALKRLCEYFEKG-----GLEEGLLSLARGVETPFMKVLMG 516

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G++ID     +L++    E   L+  I+ L      +      L   L+    +  
Sbjct: 517 MEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLGEVLYEKLELPK 575

Query: 254 VDM----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                   +  LK +  H +I  + +   LN+L ++ +       L      D ++  T 
Sbjct: 576 NKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTF 630

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P                     +  P GL    +R   I
Sbjct: 631 IQTG-TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 665

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           AS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++K++
Sbjct: 666 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKK 722

Query: 429 RAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE----- 479
           R+I K +   L Y  G+K          S     ++ + +   S   + +  + E     
Sbjct: 723 RSIAKSINFGLVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTS 782

Query: 480 ---------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQ 519
                            + +++  Y    V     G+A +L+K        R K+   ++
Sbjct: 783 KAFTLLGRYRAFDFTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVR 842

Query: 520 LWKDLTEGFACVVQEGGSISARR 542
           L   + +     ++E  +   ++
Sbjct: 843 LLLQVHDELIFEIEEKNAPELQQ 865


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 138/395 (34%), Gaps = 68/395 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E     +   +  +G++ID      L++    E   L+  I+ L      +      L
Sbjct: 82  EVETPFVKVLMGMEFQGFKIDAPYFKCLEQEFKNELHVLERQILDLIGVDF-NLNSPKQL 140

Query: 242 RMYLFLITGIDLVDM----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              L+   G+          +  LK +  H +I  + +   LN+L ++ +       L  
Sbjct: 141 SEVLYEKLGLPKNKSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTT-----PLLR 195

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
               D ++  T    G + TGR S      QN+P +                        
Sbjct: 196 LKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRS----------------------- 231

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    
Sbjct: 232 -PKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKAL 290

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTF 472
           F      ++KE+R+I K +   L Y  G+K          +     ++ + +   S   +
Sbjct: 291 FG---GDLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDY 347

Query: 473 EDWEQAE--------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510
            +  + E                      + +++  Y    V     G+A +L+K     
Sbjct: 348 LNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLK 407

Query: 511 ---RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              R K+   ++L   + +     ++E  ++  ++
Sbjct: 408 VSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 442



 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 598 TENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT 646
              I Q  + D+L  GM   ++         ++L VHDE++ E  +     +  
Sbjct: 389 VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQ 442


>gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464]
          Length = 893

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/542 (16%), Positives = 180/542 (33%), Gaps = 105/542 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100
            L + L     +    N+ F+ +   + +G D+                  R   T +LA
Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILA 429

Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                   G    ++             K  + K+ + +  +  ++           + A
Sbjct: 430 FLKNPEKVGFDEVVREYLKEELIPHETIKDFKTKSKVEKLEQLDME-----------LNA 478

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +   EY ++       L + L+ L+   E  L  +   +  +G++ID     +L++   
Sbjct: 479 LKRLCEYFEKG-----GLEEGLLALARGVETPLMKVLMGMEFQGFKIDAPYFKRLEQEFK 533

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270
            E   L+  I+ L      +      L   L+    +          +  LK +  H +I
Sbjct: 534 NELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDKHPSI 592

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             + +   LN+L ++ +       L      D ++  T    G + TGR S      QN+
Sbjct: 593 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 646

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389
           P +                              +R   IAS     L+  D + IE R+L
Sbjct: 647 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446
           A  + +   + AF  G DI++ T    F    + ++KE+R+I K +   L Y  G+K   
Sbjct: 683 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLS 739

Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485
                  +     ++ + +   S   +    + E                      +  +
Sbjct: 740 ETLNIPLNEAKSYIEAYFKRFPSIKDYLKRMKEEILKTSKAFTLLGRYRVFDFAGVNDHI 799

Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +  Y    V     G+A +L+K        R K+   ++L   + +     ++E  ++  
Sbjct: 800 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALKL 859

Query: 541 RR 542
           ++
Sbjct: 860 QQ 861


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/514 (16%), Positives = 179/514 (34%), Gaps = 75/514 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++L +  +    ++      L K     ++ +  +    ++A  +   + + +    +
Sbjct: 380 FEEFLNNSNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVISDLSNQI 438

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAWQLFGEYCKRDVEA----- 169
                +  M E + +   F KG   +P  D         +   L  +Y  + +E      
Sbjct: 439 KL---VDNMIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +L+ ++      +  L  +   I  +G  ID + +    + I ++   ++  +  L  
Sbjct: 496 TYDLYLKI------DHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDLILNRLASS 285
             I ++        ++  LF    + L ++ +GT  K +L          +L+L     +
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITFHPIINLLLEHRKYT 607

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              I  L    + +  D ++      +  + TGR S      QN+  +            
Sbjct: 608 KLYITYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIR------------ 654

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR   I +N K  +  D + IE RVLA ++ E   IKAF   
Sbjct: 655 ------------DNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQD 702

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI++      FN   D+++ EQR I KV    + Y     G A       +     ++ 
Sbjct: 703 ADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLANDLNMNVNQAKQMIKD 762

Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500
           +     S   F++ +   + +                       ++      AV   + G
Sbjct: 763 YYSAFPSLLDFKEKQVEIATNQGYITTLSNRRRYIDELNSTNHNIRQFGKRIAVNTPIQG 822

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           TA +++K A  + ++ + +  ++L     C + +
Sbjct: 823 TASDILKVAMISIYKKLKE--QNLDARIVCQIHD 854



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHD 630
            Y++   S     R +G ++  N  +Q  + DIL   M +  K          IV  +HD
Sbjct: 795 RYIDELNSTNHNIRQFGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHD 854

Query: 631 EIVSETPDTPYFSVGTLC 648
           EI+ E  D        + 
Sbjct: 855 EIILEVNDNQLEQTKKIV 872


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/514 (15%), Positives = 179/514 (34%), Gaps = 75/514 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++L +  +    ++      L K     ++ +  +    ++A  +   + + +    +
Sbjct: 380 FEEFLNNSNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVVSDLSNQI 438

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAWQLFGEYCKRDVEA----- 169
              ++L ++E    +   F KG   +P  D         +   L  +Y  + +E      
Sbjct: 439 KLVDNLIELETIDEI---FGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +L+ ++      +  L  +   I  +G  ID + +    + I ++   ++  +  L  
Sbjct: 496 TYDLYLKI------DHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEWQMKILVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDLILNRLASS 285
             I ++        ++  LF    + L ++ +GT  K +L          +L+L     +
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITYHPIINLLLEHRKYT 607

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 L    + +  D ++      +  + TGR S      QN+  +            
Sbjct: 608 KLYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIR------------ 654

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR   I +N K  +  D + IE RVLA ++ E   I AF   
Sbjct: 655 ------------DNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQN 702

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461
            DI++      FN   D+++ EQR I KV    + Y     G A       +     ++ 
Sbjct: 703 ADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNMNVNQAKQMIKD 762

Query: 462 FSQNVKSTSTFEDWEQAES-----------HHLW----------MQDQYPEFAVKDKLIG 500
           +     S   F++ +   +              +          ++      AV   + G
Sbjct: 763 YYSAFPSLLDFKEKQVEIATSKGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPIQG 822

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           TA +++K A  + ++ + +  ++L     C + +
Sbjct: 823 TASDILKVAMISIYKKLKE--QNLDAKIICQIHD 854



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHD 630
            Y+N   S     R +G ++  N  +Q  + DIL   M +  K          I+  +HD
Sbjct: 795 RYINELNSTNHNIRQFGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHD 854

Query: 631 EIVSETPDTPYFSVGTLC 648
           EI+ E  D        + 
Sbjct: 855 EIILEVDDNQLEQTKKIV 872


>gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L K GV+ YAE     + L  Y+ D   VK+ D  +   +P +++  L
Sbjct: 23  LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82

Query: 62  RDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            DE V   A N+ FERI   + LG      +    W C+ V +   GLP SL+     L 
Sbjct: 83  EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGAVLG 142

Query: 118 FSEHLTKMEEGKALI 132
             +   K+ EGK LI
Sbjct: 143 LEKQ--KLTEGKDLI 155


>gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26]
 gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26]
          Length = 728

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/791 (16%), Positives = 243/791 (30%), Gaps = 228/791 (28%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------DR---TEQSAMP 54
            +D ET    P     ++         L   A    P + W       D     + + +P
Sbjct: 26  ALDTETYGSNPFN---LYL----PDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLP 78

Query: 55  SD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLP 106
            +     +L+ L+   V    HN+ ++R +   TL I +  + +   +++A        P
Sbjct: 79  REAVRQAVLEALKRPVVY---HNAAYDRRVLAVTLDIPLD-QTYGDDTMVALHLVDENHP 134

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             LK     L   E +    E   L       ++        +  H    +L  ++ +R 
Sbjct: 135 LGLKEWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVH----KLKPDWLQRL 190

Query: 167 VEATRELFK-----------------------------------RLIPLSDGERDLWLLD 191
            +A   +                                     RL P+      ++ LD
Sbjct: 191 KDAFLAVHNGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPV--DIAAIYALD 248

Query: 192 QTIN-------------------------------------DRGYRIDLDLVLKLQELIA 214
             +N                                      RG  +D + + +++E I 
Sbjct: 249 DAMNTLALWEHVEVFFELHPKLHTLYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQ 308

Query: 215 QERKKLDEDIVKLTDGIIRSS--------RQTYALRMYLFLITGIDL--------VDMSE 258
              ++  ++  +L   +I S              L   L+ + G  +           S+
Sbjct: 309 ARIEEKAQEAQELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSK 368

Query: 259 GTLKSIL----SHSNITQLAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQF 311
             +  +L           LAK  +  + A  G   L     +++ E V   GRL      
Sbjct: 369 TAIAKLLTLSPKDKKKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNT 428

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G + +GR S      QNLPR                  E +A+   L    +R   +A 
Sbjct: 429 VG-TVSGRMSSSNPNLQNLPR---------------LLPEEVAEKPYLQGIDIRKAFVAD 472

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KV 424
            G   V AD A +E  V A ++G+         G D++  T   AF   +D       + 
Sbjct: 473 PGYIFVSADYASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQ 532

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
            K+ R   KV+  AL Y G      T+  + G   ++  Q ++    FE +   ++    
Sbjct: 533 YKDYRQKAKVVNFALIYGG---TEFTLIKNFGFSEEEAKQLIQG--YFEAYPVVKTWMEE 587

Query: 485 MQDQYPEFA-VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           +  +  E   V+  + G     +K+              DL +    + ++   +     
Sbjct: 588 VYRELEEKGFVEYPIYGY----IKRM-------------DLPQALRKLPKDKWPLVLNND 630

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN-IV 602
                              P +R+  Y+ ++                        +N ++
Sbjct: 631 -------------------PDARKQYYASLRS----------------------CQNALI 649

Query: 603 QAISR----DILCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655
           Q  S     D + +  +     G D  +++ VHDEIV    +     V  +    M +  
Sbjct: 650 QGFSAFVVKDAIVQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV 709

Query: 656 SWAKGLPLKAE 666
               G+ LKAE
Sbjct: 710 ---NGVLLKAE 717


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/539 (18%), Positives = 170/539 (31%), Gaps = 92/539 (17%)

Query: 4   LFIDIETRSP-QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYL 61
           LF+D ET      L ++G                     + L D  E        L + L
Sbjct: 25  LFLDTETTGDRLRLVQLG-----------------GQGEIFLLDLFELGERGVLFLKELL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
             + V  V HN  F+    K      I       T V ++    L      +       +
Sbjct: 68  SQKGV--VGHNLKFD---LKYLYRYHIEPYAVFDTMVASQLLAELDRHSLQSVAMHYLGQ 122

Query: 121 HLTKMEEGKAL-IARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEA-----TREL 173
            L K  +          K  ++    D      +          C    E      T  +
Sbjct: 123 VLDKSLQLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILLKTRTSRV 182

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           F    P++  E         +   G  +D   +     +  +  +K+   I+        
Sbjct: 183 FGLQNPVAIVEMAFVQEVAKLELNGLPVDTQELES---VFREYSRKVQRMIMDFISTHRV 239

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
                  L  +L    G+DL    +G +        +++ A   ++  +    ++   L+
Sbjct: 240 DPMSPKQLGEFLTRRLGLDLPKTEKGNV--STDDKALSEHAHHPVVRHILEIRASKKILD 297

Query: 294 TLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            L E   +    R+    +  GA  TGR +      QN+P+                   
Sbjct: 298 KLEEIRENLRGNRVYPEFKQIGAV-TGRMASSNPNVQNIPKD------------------ 338

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R    A  G   V+AD + IE R+ A   GE   I+AF  G D++  
Sbjct: 339 ------------LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRY 386

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ-QFSQNVKSTS 470
           T +       + ++KE+R + K +   L Y   AK     A+  G+DL  + +Q ++   
Sbjct: 387 TASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERF 446

Query: 471 T-----FEDWEQAESHHL---------------WMQDQYPEFAVKDKLIGTACELVKKA 509
                 F DW       L               ++   +P+ AV   + GT  +L+K A
Sbjct: 447 FSYFEGFRDWHNRVKEELKKTGKSSGHTLLGRSYVAHTFPD-AVNYPIQGTGADLLKLA 504


>gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45]
 gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45]
          Length = 728

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 132/785 (16%), Positives = 244/785 (31%), Gaps = 216/785 (27%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------DR---TEQSAMP 54
            +D ET    P     ++         L   A    P + W       D     + + +P
Sbjct: 26  ALDTETYGSDPFN---LYL----PDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLP 78

Query: 55  SD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLP 106
            +     +L+ L+   V    HN+ ++R +   TL I +  + +   +++A        P
Sbjct: 79  REAVRQAVLEALKRPVVY---HNAAYDRRVLAVTLDIPLD-QTYGDDTMVALHLVDENHP 134

Query: 107 SSLKNACLAL-----------------------------NFSEHLTKMEEG--KALIARF 135
             LK     L                              + + + K++    + L   F
Sbjct: 135 LGLKEWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAF 194

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGE------------------------YCKRDVEATR 171
                    Y        +A+Q                            Y   D   T 
Sbjct: 195 LAVHNGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTL 254

Query: 172 ELFKR---LIPLSDGERDLW-LLDQTIND-------RGYRIDLDLVLKLQELIAQERKKL 220
            L++       L      L+  ++  +ND       RG  +D + + +++E I    ++ 
Sbjct: 255 ALWEHVEVFFELHPKLHALYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEK 314

Query: 221 DEDIVKLTDGIIRSS--------RQTYALRMYLFLITGIDL--------VDMSEGTLKSI 264
            ++  +L   +I S              L   L+ + G  +           S+  +  +
Sbjct: 315 AQEAQELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKL 374

Query: 265 L----SHSNITQLAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQFYGASRT 317
           L           LAK  +  + A  G   L     +++ E V   GRL       G + +
Sbjct: 375 LTLSPKDKRKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVS 433

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QNLPR                  E +A+   L    +R   +A  G   V
Sbjct: 434 GRMSSSNPNLQNLPR---------------LLPEEVAEKPYLQGIDIRKAFVADPGYIFV 478

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KVSKEQRA 430
            AD A +E  V A ++G+         G D++  T   AF   +D       +  K+ R 
Sbjct: 479 SADYASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQ 538

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             KV+  AL Y G      T+  + G   ++  Q ++    FE +   ++    +  +  
Sbjct: 539 KAKVVNFALIYGG---TEFTLIKNFGFSEEEAKQLIQG--YFEAYPVVKTWMEEVYRELE 593

Query: 491 EFA-VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
           E   V+  + G     +K+              DL +    + ++   +           
Sbjct: 594 EKGFVEYPIYGY----IKRM-------------DLPQALRKLPKDKWPLVLNND------ 630

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN-IVQAISR- 607
                        P +R+  Y+ ++                        +N ++Q  S  
Sbjct: 631 -------------PDARKQYYASLRS----------------------CQNALIQGFSAF 655

Query: 608 ---DILCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGL 661
              D + +  +     G D  +++ VHDEIV    +     V  +    M +      G+
Sbjct: 656 VVKDAIVQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGV 712

Query: 662 PLKAE 666
            LKAE
Sbjct: 713 LLKAE 717


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 91/506 (17%), Positives = 172/506 (33%), Gaps = 78/506 (15%)

Query: 40  EPVKLWDRTEQS--AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWIC 95
           E + + D  +     +   L + L  + +  V HN  F+         +        +I 
Sbjct: 54  EDIFVIDAFKVERDTLKEFLKEVLESKGI--VGHNLKFDLKFLATNFDVYPKVVFDTFIA 111

Query: 96  TSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           + +LA+  N    SL    + L   E     +     +    K  I+   Y       ++
Sbjct: 112 SKILAKGDNSQKHSLSAVAVRLTDEEVDKTYQTSPWWVENLTKEQIE---YSAKDIEVLR 168

Query: 155 AWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           +  +F E   R  E          T ++F  + P++  E        +I   G  ID   
Sbjct: 169 S--IFREQVVRLNEEQTHLKSSGETYKVFGVVNPVAALEMAFLPCLVSIELSGIPIDEKQ 226

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           +  L +      + L  +  +       S +Q      +L    G+ L    +G+  S  
Sbjct: 227 LSNLIKNSKTTFQNLYIEFKRKYYIDPFSPQQVAN---FLTKKLGLKLPKTEKGSFSSQD 283

Query: 266 SHSNITQLAKDL-ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            H    +   ++  L  +      + KL  LS+ V  + R+ G  +  GAS TGR S   
Sbjct: 284 VHLKPYEDKPEVKTLLSIRYEKKTLDKLEELSKYV-KNSRVYGEFKQIGAS-TGRMSSYK 341

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P+                               ++S   A +G   ++AD + I
Sbjct: 342 PNLQNIPKN------------------------------LKSIFRAPDGYLFIIADYSQI 371

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+ A    +   IKAF   +D++  T +        +++KE+R + K +   L Y   
Sbjct: 372 ELRIAAEYTKDKSMIKAFQEKKDLHKLTASVITGKDYQEITKEERNLAKAINFGLIYGIS 431

Query: 445 AKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF----------- 492
            K     A  +  +D+          + F  + + +  H  +++   +            
Sbjct: 432 PKSLVEYAKNNYDIDITLSQAKTFHENFFNFYPKFKEWHENVKNYLEKHKFIQVETLLGR 491

Query: 493 ---------AVKDKLIGTACELVKKA 509
                    AV   + G+  +L+K A
Sbjct: 492 KLIAYKFTDAVNYPIQGSGSDLLKMA 517


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 110/684 (16%), Positives = 220/684 (32%), Gaps = 125/684 (18%)

Query: 54  PSDLLQYLR---DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           P  + + L+   D  +  + HNS F+       LG+ +    W  T + A       S  
Sbjct: 136 PEFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEPAW-DTYLAAMLLNENESHS 194

Query: 111 NACLALNF-----SEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCK 164
              L   +     +  + K  +    I         +  Y         + ++   +Y  
Sbjct: 195 LKSLHSKYVRNEENAEVAKFNDLFKGIPFSLIPPDVAYMYAAYDPLQTFELYEFQEQYLT 254

Query: 165 RDVE--ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              E      L K    L + E  L  +   +   G  +D D + +++E       + ++
Sbjct: 255 PGTEQCEEYNLEKVSWVLHNIEMPLIKVLFDMEVYGVDLDQDKLAEIREQFTANMNEAEQ 314

Query: 223 DIVKLT--------------------------DGIIRSSRQTYALRMYLFLITGIDLV-- 254
           +  +L                             +  S      L +  + I G+     
Sbjct: 315 EFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISSPTQLAILFYDIMGLKSPER 374

Query: 255 DMSEGTLKSILSHSNIT---QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
           D   GT +SI+ H +      L K     +L S+ + +            D R+  T + 
Sbjct: 375 DKPRGTGESIVEHFDNDISKALLKYRKYAKLVSTYTTLD-----QHLAKPDNRIHTTFKQ 429

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
           YGA +TGR S      QN+P +                              VR    AS
Sbjct: 430 YGA-KTGRMSSENPNLQNIPSRGE-------------------------GAVVRQIFAAS 463

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV------- 424
            G  ++ +D +  E R LA ++G++    A+    D+Y    +K +  P ++        
Sbjct: 464 EGHYIIGSDYSQQEPRSLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPYEECLEFYPDG 523

Query: 425 -----SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                 K +R   K + L L Y  GA      A    + +++ ++ ++    F ++ +  
Sbjct: 524 TTNKEGKLRRNSVKSVLLGLMYGRGANSI---AEQMNVSVKEANKVIED--FFTEFPKVA 578

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            + +++Q Q  +        G          R     + +   +  +       +  +  
Sbjct: 579 DYIIFVQQQAQDLGYVQTATGRRR-------RLPDMSLPEYEFEYIDASKNEDFDPFNFD 631

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL-- 597
           A +  +         K    +             K      + A ++ +  +  GGK+  
Sbjct: 632 ADQQMDDTVPEHIIEKYWAQLDRAWG-------FKKKQEIKDQAKAEGILIKDNGGKIAD 684

Query: 598 -----TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP-DTPYFSVG 645
                  +++Q  + D+    M     +      G+ +++ VHDE++ E P         
Sbjct: 685 AQRQCLNSVIQGTAADMTKYAMIKVHNDAELKELGFHLMIPVHDELLGEVPIKNAKRGAE 744

Query: 646 TLCSLMTKNPSWAKG---LPLKAE 666
            L  +M +    AK    LP+K +
Sbjct: 745 RLTEVMIEA---AKDIISLPMKCD 765


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 118/366 (32%), Gaps = 63/366 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTY 239
           D E  L  +   +   G  ++ +    L   +     ++++ I +       + S +Q  
Sbjct: 453 DVEIPLIPVLWRMETWGIGLNRESFNGLDSDLEIRIVEIEDTIAEKGGERINLNSPKQVA 512

Query: 240 ALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            L   LF    +  +  ++         L+ ++      +   +LIL     S      +
Sbjct: 513 WL---LFEKLNMPPIKETKTGYSTDVTVLEELVKMGLPEKEVPELILEHRELSKMRSGFV 569

Query: 293 NTLSEAVSSDGR-LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L  A   +   + GT +   ++ TGR S      QNLP                    
Sbjct: 570 HPLVSAADENTDLIHGTFE-STSTGTGRLSSRDPNLQNLP-------------------- 608

Query: 352 TIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                 G  S  ++  ++   +G   V AD + +E RVLA +  E    +AF    DI+ 
Sbjct: 609 ----AFGQWSTRLKEGLVPHKDGNIFVAADYSQVELRVLAHLCDEKRLKEAFEARRDIHT 664

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T +  FN     V+ E R   KV+   L Y       A          G  + ++ + +
Sbjct: 665 ETASWIFNVNPQMVTPELRRFAKVVNFGLLYGMSSFGLASRLGIGQQEAGDIINRYFRAL 724

Query: 467 KSTSTFEDWEQAESHHLWM--------------------QDQYPEFAVKDKLIGTACELV 506
                + +    ++                         +      AV   + GTA ++ 
Sbjct: 725 PKVRDYIEKSYQDARKRGYAVTDFGRIRPLDEVSVNPRDRGALKRIAVNTPIQGTAADIA 784

Query: 507 KKAWRA 512
           + A   
Sbjct: 785 RMAMIK 790


>gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023]
          Length = 155

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-------DCSYLNTATSQLMR 589
           +IS R       L        + I LPS R L Y   K           Y         +
Sbjct: 10  AISTRESQKYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRK 69

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           + TYGGKL ENIVQAI+RD L   ++     G   V+ VHDE ++E P++   SV  L +
Sbjct: 70  QYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAITEVPESES-SVDKLNA 128

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 129 ILAEPISWAPGLPLQGDGFSSDFYMK 154


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 130/378 (34%), Gaps = 68/378 (17%)

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQ 272
           L  DI KL DG   +      L   LF    I     ++         L+ I ++  +T+
Sbjct: 2   LQSDIYKLADGEF-NIDSPQQLGEVLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTE 60

Query: 273 LAKDL---ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
             + +   +L   A        +  + +    + R+  T    G + TGR S      QN
Sbjct: 61  DKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQNG-TSTGRLSSANPNLQN 119

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P +                              +R+  +A  G  L+  D + IE RVL
Sbjct: 120 IPVRTDD------------------------GIRIRTGFVAKEGHSLISFDYSQIELRVL 155

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           A ++ +   +KA+ + +D++  T  K  F T  D++S+ +R+I KV+  ++ Y     G 
Sbjct: 156 AELSKDRHLVKAYQDNQDLHDLTARKIFFKTEEDEISRHERSIAKVINFSILYGKTPFGL 215

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HL 483
           +K            +  + +       F D     +                      + 
Sbjct: 216 SKELGITVQEASQYITTYFEEYPRVRKFLDIVTETAKLHGFVETFYGTRRYISGINATNK 275

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKH------QGVLQLWKDLTEGFACVVQEGGS 537
            +Q Q    AV   + GTA  ++KK     H      + +  L +   E    V  E   
Sbjct: 276 NIQAQAVRMAVNTVVQGTAANIIKKVMIELHEEFKNDENIKMLLQVHDELIFEVRDEFAK 335

Query: 538 ISARRVANVPRLVMRRHK 555
              +++  +    ++  K
Sbjct: 336 EYMKKIEKIMENTVKFKK 353


>gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
 gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
          Length = 816

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 140/431 (32%), Gaps = 78/431 (18%)

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                   E    L+ +       ++ L  + + +   G  +D++ +L L   I+ + ++
Sbjct: 404 KLRNAMFTEKVLTLYYK------VDKPLINVIKHMEKNGISLDVEQLLSLSTQISGKLEE 457

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL------ 273
           ++  I   T G   S +    L   LF    I +    +  L S   +  +T L      
Sbjct: 458 IENKIFD-TAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKTGLSST-DNEVLTSLSSQGYE 515

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT--GRWSGCVFQPQNLP 331
             D +L+           ++ L   V+   +       Y  + T  GR S      QN+P
Sbjct: 516 IADYLLSWRHYIKLKTAYIDPLLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNIP 575

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R                               +R    A  G   + AD + IE R+LA+
Sbjct: 576 R----------------------------EKNIRKIFTAKEGHYFLCADYSQIELRILAY 607

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447
           IA  +    A A+G D++  T ++ F T  DK++   R   K +   + Y     G +K 
Sbjct: 608 IANVERLKCALASGTDLHTLTASQIFKT--DKITPNLRNKAKAVNFGIVYGITNFGLSKQ 665

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------- 488
                      +Q++        ++ +  + ++                           
Sbjct: 666 LAISKEEAASYIQKYFDEYPEIKSYMNHIRNQAKKDTYVKTIMNRKCPIQNINSDNRAIS 725

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSIS 539
                 A+   + GTA ++++ A     Q        V+Q+  +L         +  +  
Sbjct: 726 LIAERSAINAPIQGTAADIIRAAMVRMAQEKELLSHMVMQVHDELVFELETDAIQQLAKK 785

Query: 540 ARRVANVPRLV 550
            +++   P  +
Sbjct: 786 IKQIMEEPHGI 796



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY---DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSW 657
           +Q  + DI+   M    +       +V+ VHDE+V E        +   +  +M +    
Sbjct: 737 IQGTAADIIRAAMVRMAQEKELLSHMVMQVHDELVFELETDAIQQLAKKIKQIMEEP--- 793

Query: 658 AKGLPL 663
             G+PL
Sbjct: 794 -HGIPL 798


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 55/249 (22%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                +R   IA     +
Sbjct: 1   TGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFIAPEDYVI 36

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQR   K + 
Sbjct: 37  VSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAIN 96

Query: 437 LALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------H 481
             L Y       A+            +  + +       + +  +A++            
Sbjct: 97  FGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGR 156

Query: 482 HLWMQDQYPEFA----------VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLT 525
            L++ D                +   + GTA +++K+      AW    Q  +++   + 
Sbjct: 157 RLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 216

Query: 526 EGFACVVQE 534
           +     V +
Sbjct: 217 DELVFEVHK 225



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 184 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 239


>gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 169

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +   W+ L       +    +           + ++  +  + + LPS R L Y+  +
Sbjct: 7   PAIAAFWQALQCAVTDAIGHPETAHT-----CCGIAVQYSRAWLRLRLPSGRVLYYAAPR 61

Query: 575 ----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
               G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTV
Sbjct: 62  VDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLTV 121

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEI++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 122 HDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168


>gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 642

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/571 (16%), Positives = 183/571 (32%), Gaps = 104/571 (18%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTN 103
            DRT      +DL   L +  +  VAHN  FE  + + + + I  P    I  + +   +
Sbjct: 77  IDRTAFFLFLADL---LANPHITKVAHNIAFESSMAYARGIVIQPPVYDTIAAAQMTSRS 133

Query: 104 GLP------SSLKNACLALNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQ 154
                    S LK+    L   E L    E  G            ++  Y    A+  ++
Sbjct: 134 AYEFRRLNESGLKHLAGEL-LEESLPTFAETTGGKHFDELPAQDKETVRYGAADADFSLR 192

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +  F  +  R +   R + + +      E    +    + + G  ID  L+ K +    
Sbjct: 193 LYHTFNGWFDRYLPRHRWIVEHM------ESPTAIYLGVMKNNGVPIDQSLMQKRKAESE 246

Query: 215 QERKKLDEDIVKLTDGIIRSSR-QTYALRMYLFLITGIDLVDMSEGTLKSI-------LS 266
            E +++ ++I  L   +   +   T   + YLF   G+ ++ ++  +  ++       L 
Sbjct: 247 MEMERIRQEITFLIGDVNIGANCSTADFKKYLFESQGLPVLKVTNKSQAALDDMAMVLLG 306

Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                   + + L +L        K+     +   + ++   +      F  ++ TGR +
Sbjct: 307 EWCEEHKPELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFALSTDTGRMN 366

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+PR+                     DP+G     VR+ I A +G  ++  D 
Sbjct: 367 CRKPNCQNMPRKS-------------------NDPIG-----VRNFIKAPSGHLILSLDF 402

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------VSKEQRAIGKV 434
           + IE RV A+   ++  ++ +  G DI+  T    F    ++         KE+R I K 
Sbjct: 403 SQIELRVGAFYCRDERMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKN 462

Query: 435 MELALGYQGGAKV------------------------FKTMASHCGLDLQQFSQNVKSTS 470
           +     Y    +                          K          ++         
Sbjct: 463 VNFGTFYGLFPRGLQNTLKFKAGVEKTLPECESVIANLKAGYRELSTWQEETKVQAARRL 522

Query: 471 TFEDW-------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------- 516
             E W           S     +      A+   + GTA +++K A     +G       
Sbjct: 523 YSETWLGRRRYLPDIRSKEWARKSFAERCALNTPIQGTAADILKLAIVRILKGLPDRPWL 582

Query: 517 --VLQLWKDLTEGFACVVQEGGSISARRVAN 545
             +LQ+  +LT        +      R    
Sbjct: 583 KPILQIHDELTFIIPAGRLDEAVAFIRACME 613


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 185/540 (34%), Gaps = 95/540 (17%)

Query: 4   LFIDIETRSP-QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L++D ET      L ++G                 D+E   + D  E   +  + L+ L 
Sbjct: 25  LYLDTETTGDRIRLVQIG-----------------DEENTYVIDLYEIQDI--EPLRKLI 65

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +E  + V HN  F+    K      I       T + +   G      N  ++      +
Sbjct: 66  NERGI-VGHNLKFD---LKYLYRYGIFPSATFDTMIASYLLGYERHSLNHIVSNLLGYSM 121

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK----RLI 178
            K  +     A     +      +          ++     + D E   EL K    ++ 
Sbjct: 122 DKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTRTAKIF 181

Query: 179 ----PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
               P++  E         +   G+ +D++ +    + + +E +K  ++          S
Sbjct: 182 DLKSPVAIVEMAFVREVAKLEINGFPVDVEELTNKLKAVERETQKRIQEFYIKYRVDPLS 241

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAIL 290
            +Q  +L   L     ++L    +G +    K++ S+ ++  +   L + +L        
Sbjct: 242 PKQLASL---LTKKFKLNLPKTPKGNVSTDDKALTSYQDVEPVKLVLEIRKL---KKIAD 295

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL  L E +  +GR+    +  GA  TGR S      QN+ R                  
Sbjct: 296 KLKELKEHL-KNGRVYPEFKQIGAV-TGRMSSAHPNIQNIHRD----------------- 336

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R    A  G   V++D + IE R+ A    +   + AF  G+D++ 
Sbjct: 337 -------------MRGIFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLDAFKKGKDMHR 383

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKST 469
            T +       ++++KE+R + K +   L Y   AK     A    G+++      V   
Sbjct: 384 YTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAEYAKLGYGVEISLEEAQVLRE 443

Query: 470 STFEDWEQAESHHLWMQDQYPEF--------------------AVKDKLIGTACELVKKA 509
             F++++  +  H  ++ +  E                     AV   + GT  +L+K A
Sbjct: 444 RFFKNFKAFKEWHDRVKKELKEKGEVKGHTLLGRRFSANTFNDAVNYPIQGTGADLLKLA 503


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/499 (14%), Positives = 150/499 (30%), Gaps = 78/499 (15%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS------SL 109
           +L Q+  ++      ++      L +    I      +   +++A     P+      +L
Sbjct: 361 ELEQFFLNDNFKKNTYDIKKTVTLLRNN-NIKFSFSSFTYDAMIASYVLNPNVTSRIQNL 419

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKR 165
            N     L   E      +G          S             + H     L  E  + 
Sbjct: 420 ANIVETELFVEEDELFYGKGVKQNKEIDTASKAKFIVGKLELLYSTHKPIINLLKENNQ- 478

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                  L++++      E  L  +   +  +G  ID   + K         ++L+E + 
Sbjct: 479 -----FNLYEKI------ELPLVEVLFNMEQKGILIDKVELDKQTARTLFLIEELEEKMK 527

Query: 226 KLTDGIIR---SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            +    I    +      ++  LF   G+          +++    ++  +   L+ +R 
Sbjct: 528 VILKDQISENFNFGSPKQIKELLFDQIGLPSNKKQSTDKEALEKIIHLHPVINLLLEHR- 586

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +      L    + +  D ++         + TGR S      QN+            
Sbjct: 587 KLNKLYSTYLRGFEKFIFDDNKVHTIFN-QTLTNTGRLSSSEPNIQNIS----------- 634

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 R   I++N  K    D + IE RVLA +  ED  +  F
Sbjct: 635 -------------VKDELQREARKIFISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIF 681

Query: 403 ANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457
            N  D++     K F     ++++ +QR I KV    + Y     G +   K        
Sbjct: 682 KNDRDVHAEAARKIFKLEENEEITSDQRRIAKVFNFGIIYGLSDFGLSNDLKISIPEAKR 741

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP---------------------EFAVKD 496
            +  +  +     T+++    ++      + Y                        AV  
Sbjct: 742 FIDDYYLSFPKLMTYKNSLINQATVNGYAETYANRRRIVNELASSNFMVKNFGNRIAVNM 801

Query: 497 KLIGTACELVKKAWRAKHQ 515
            + GTA +++K A    H+
Sbjct: 802 PIQGTAADILKVAMNNIHK 820


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 129/407 (31%), Gaps = 65/407 (15%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            R    RL  + + ER        +  +G     +L  +      +E + L  ++     
Sbjct: 290 ERARTLRLEKVLEVERRALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGEL----- 344

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA- 288
               +      +  YL    G+DL D  E TL     H  + +L +     +  S+    
Sbjct: 345 PFGVNWNSPAQVLAYLKGE-GLDLPDTREDTLAGYREHPLVAKLLRYREAAKRVSTYGKE 403

Query: 289 -ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               LN       + GR+  + Q  GA  TGR +      Q +PR               
Sbjct: 404 WAKHLNP------ATGRIHPSWQQIGA-ETGRMACRKPNLQQVPRD-------------- 442

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R       G+ ++ AD + IE R+ A IA E   ++AF  G+D
Sbjct: 443 --------------PALRRAFRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKD 488

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T +     P+++V KE R + K +   L Y  GA+  +  A           +  K
Sbjct: 489 LHALTASLVLGKPLEEVGKEDRQLAKALNFGLLYGLGAEGLRRYALTAYGVKLTLEEAQK 548

Query: 468 -STSTFEDWEQAESHH---------------LWMQDQYPEFAVKDKLIGTACELVKKAWR 511
              + F  +   +  H                          +   + GT  + +K A  
Sbjct: 549 LRDAFFRAYPALKRWHRSQPEGEVVVRTLLGRRRTTDRYTEKLNTPVQGTGADGLKMALA 608

Query: 512 AKHQGVLQLWKDL------TEGFACVVQEGGSISARRVANVPRLVMR 552
              +    LW          E      +EG       +  + R  M 
Sbjct: 609 LLWENRGLLWGAFPVLAVHDEVVLEAPEEGAKEYLETLTALMRRGME 655


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 96/647 (14%), Positives = 192/647 (29%), Gaps = 128/647 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
           E   I    +  D E       T    M   L  +L  +    V HNS F+  +  K  G
Sbjct: 178 ENFYI-PYGHTSDHEQ-----LTRGYVM-KKLKPHLEKKGTKLVLHNSKFDSHMLLKD-G 229

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I I +  +  T +               +A  +       ++  +    F          
Sbjct: 230 ITIRNNIYFDTMIAHSVLNENDEKGLKAIATKYGRFFGFEDKSMSFGELFSNKPEAFYSN 289

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTI 194
                   ++ +L   Y  +D     +L+K  + +              E+ L      +
Sbjct: 290 --------ESMELCTFYACKDTHLCLKLYKWQLSMMKKQPKLYDVYFNYEQPLTPAVLAM 341

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            + G+ ID       +  +  E   L++ + +    I  +      L   L+    +  +
Sbjct: 342 EETGFEIDFSFADMYKTELQAEVSDLEQKMTRRFGEI--NLNSPAQLSALLYDELKLPDI 399

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
                     L      +    LIL     +      +  L E V+   G+L  +     
Sbjct: 400 SGKRKADAKTLQKLVKHESDLKLILEYRDLNKLLTTYVEPLPEKVNKNTGKLHSSFN-QS 458

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ T R++      QNLP                                 R  I+A  G
Sbjct: 459 ATVTSRFASKDPNLQNLP------------------------------PKARKLIVAPKG 488

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---------- 423
             +   D + IE R LA ++G+      + N  D+Y +  +K F  P +           
Sbjct: 489 YLIFGIDYSQIEPRTLAHMSGDAGLQYPYLNNIDLYASLASKIFKLPYEACLEADGETYK 548

Query: 424 ---VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
              + K  R + KV  LA+ Y        ++A   G+ + +  + +     +  + +  +
Sbjct: 549 KAGLPKHPRKMMKVGLLAVMYGI---TVPSLAESLGISVPEAQKFMDD--FYSSYPEMTA 603

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                     E    + + G                                        
Sbjct: 604 WMAKQVAHADETGYVETMQG---------------------------------------- 623

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY--GGKLT 598
           R+   +   V+ +H   +H  + +       ++  +    N         + Y    +++
Sbjct: 624 RKRRFIGHTVIAKHYHALHAKVVNILGREPENIWREPLPRNLKKQYWEVNKDYQRVARMS 683

Query: 599 EN-IVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
            N I+Q  +  +L + M            G+ ++ T+HDE++   P+
Sbjct: 684 VNAIIQGSAALMLKKAMIAVNAHLERKGAGWKMMATIHDELLFLIPE 730


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 87/266 (32%), Gaps = 59/266 (22%)

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR +      QN+P +                              +R   +A  
Sbjct: 1   AVAITGRLASSDPNLQNIPVRT------------------------AEGRRIREAFVAPP 36

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  +V AD + IE R++A ++ +   + AFAN EDI+  T A+ F      V  EQR   
Sbjct: 37  GSHIVSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAAVDSEQRRYA 96

Query: 433 KVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQ 477
           KV+   L Y       A+      S     ++++         + +            E 
Sbjct: 97  KVINFGLIYGMSAFGLAQNLNIERSAAANYIERYFARYPGVRQYMNDTRELAKQQGYVET 156

Query: 478 AESHHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRAKHQ----------GV 517
                LW+          ++     A+   + GTA +L+K A  A  Q           +
Sbjct: 157 IFGRRLWVPEINSANVQRRNGAERAAINAPMQGTAADLIKLAMIAVDQWLTAEKLQTKLI 216

Query: 518 LQLWKDLTEGFACVVQEGGSISARRV 543
           +Q+  +L                 R+
Sbjct: 217 MQVHDELVLEVPDAELALIQEHLPRL 242



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
           Q  + D++   M          K    +++ VHDE+V E PD         L  LM
Sbjct: 188 QGTAADLIKLAMIAVDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLPRLM 243


>gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
 gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
          Length = 160

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 84/162 (51%), Gaps = 11/162 (6%)

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----G 575
            WK L       ++   +           + M+  +  + + LPS R L Y+  +    G
Sbjct: 3   FWKALQFAATDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHG 57

Query: 576 DCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
             SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE++
Sbjct: 58  ALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMI 117

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 118 TEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 159


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 28/201 (13%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   V  + +   T     ++ TGR S      QN+P +                   
Sbjct: 2   DALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT------------------ 43

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  T
Sbjct: 44  ------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMT 97

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468
            ++ F  P++ +  E R   K +   + Y     G A       S  G  ++++ +    
Sbjct: 98  ASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPG 157

Query: 469 TSTFEDWEQAESHHLWMQDQY 489
              + +  +A +      +  
Sbjct: 158 IRDYMESRKAMARDKGYVETI 178


>gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
          Length = 154

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 81/158 (51%), Gaps = 11/158 (6%)

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSY 579
           +       +    +           + ++  +  + + LPS R L Y+  +    G  SY
Sbjct: 1   MQCAVTDAIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSY 55

Query: 580 LNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
           + T   T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  
Sbjct: 56  MGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEAD 115

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           D   F+   L +LM   P WA+GLPL AEG+E  RYRK
Sbjct: 116 DNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 153


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 93/261 (35%), Gaps = 63/261 (24%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGL 359
             GR+  +      + TGR S      QN+P R ER  E                     
Sbjct: 3   KTGRVHTSYN-QAVAVTGRLSSNNPNLQNIPVRTERGRE--------------------- 40

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   +       L+ AD + IE R++A I+G+    +AF  G+DI+  T AK +N
Sbjct: 41  ----IRKAFVPRDENHLLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYN 96

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
                V+KE R   K +   + Y  G    A+  K   S     +  + +   +   + D
Sbjct: 97  IEEADVTKEMRYKAKSVNFGIIYGQGAFGLAENLKITRSEAKEIIDNYKKQFPNIQQYMD 156

Query: 475 WEQAESHH------LW---------------MQDQYPEFAVKDKLIGTACELVKKAWRAK 513
            +   +        LW               ++      A+   + GTA +++K A    
Sbjct: 157 AQMKFAQQNGYVETLWGRKRWLKDINSGNFTVRGYAERNAINMPIQGTAADMIKLAMIKI 216

Query: 514 HQG----------VLQLWKDL 524
           H+           +LQ+  +L
Sbjct: 217 HREFKDRGFKSKMILQVHDEL 237


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 92/574 (16%), Positives = 180/574 (31%), Gaps = 103/574 (17%)

Query: 6   IDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSA-MP-- 54
           ID+ET    P      + K  + AY  ++Q  I     +             +   MP  
Sbjct: 211 IDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMPGN 270

Query: 55  ------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                   L + L  E +  +AHN  F+    + +L I + +  W  T ++     +   
Sbjct: 271 QIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIW-DTMLI-HYLCITEE 328

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L  + +   T M               + P  +      +  W +   Y   D +
Sbjct: 329 KGTHGL-KDLAWLETDMG------GYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCD 381

Query: 169 ATRELFKRLIPL-SDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQER 217
            T  L ++ IPL  + E   WL +            I   G  +D + +  L+    +E 
Sbjct: 382 VTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEI 441

Query: 218 KKLDEDIVKLTD------------------GIIRSSR----------------------- 236
            +L++ + +  +                  G I+S+                        
Sbjct: 442 SRLEDKMREFPEVVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDK 501

Query: 237 ----QTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                T  L   LF   G++        +  T    L           +++    ++   
Sbjct: 502 INFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRKANHLY 561

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++ LS  +  D  +  +   +G + TGR S      Q  PR+  +  +     +   
Sbjct: 562 NNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNFEIKK 620

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
              +                   +G  +V  D + +E R+LA I  +   I  + +G D+
Sbjct: 621 MFNSRF----------------GDGGVIVQFDYSQLELRILAVITQDPTLIDLYRSGADL 664

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    + AF   I++VSK+QR   K ++  + YQ  A+         G+ + +    +  
Sbjct: 665 HKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFI 724

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
              F+ + +        +           L G  
Sbjct: 725 KKYFKRFPKVSKWIRDTKKHVKRHKYVKTLTGRT 758


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 108/662 (16%), Positives = 200/662 (30%), Gaps = 143/662 (21%)

Query: 29  VITLCAYAWDDEP----VKLWDRTE----QSAMPSDLLQYLRDETVMCVAHNSLFERILF 80
            I   + A  + P    V   D  +    + ++  DL   L +  +    H+S F     
Sbjct: 50  EIQRISLALPNAPSSSTVYTVDIADRPELKESIIGDLAGLLENGRIKKTLHDSKFVLSFI 109

Query: 81  KKTLGIDIPSKRWICTSVLA-------RTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133
           +   G  +         + +              + KN          L  + E    I 
Sbjct: 110 RARAGRKLNFCSIFDVMLASQICWSGYYYLTPSGNPKNPWTKRLVDHSLASLAERHLGI- 168

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
              +    +         H             D+ A       L  ++D E    +    
Sbjct: 169 ILDEEGCPAQGAAALLPLH-------------DILADLLAKNDLQRVADLEFRAAIALVE 215

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI-----------------IRSSR 236
           +   G  +D       ++LI QE  ++ + I ++ D                     +  
Sbjct: 216 MEISGIGLDSS---GARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSFDGKRLCCYLNPD 272

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           +   +  +L    G    +     LKS+ +       A    L R       +L LN   
Sbjct: 273 RQEDVMAFLAKR-GYRPANTKAEVLKSLAAAGCSFAEA----LMRYRHLSYNLLFLNKWL 327

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           E V   DGR+     F   S TGR S      Q +PR+                      
Sbjct: 328 EKVHPLDGRVHPQY-FQIPSSTGRISSRHPNAQQIPRR---------------------- 364

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
             G  +  +R     + GK+ V ADL+ IE R++A I+G++   +AF  G D++  T ++
Sbjct: 365 --GDDAPAIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFIKGIDLHRLTASR 422

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDL--QQFSQNVKSTSTF 472
              TP ++V+  QR   K M   L Y G AK  +  + S  G  +   +  + ++     
Sbjct: 423 ISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQWRILSDYGEFICLDETEERLERF--- 479

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
             +        W + Q  + +   +                          +   F+  +
Sbjct: 480 --FCSYPGVREWQKMQLSQMSYTMQHH--------------------FHNCVRGFFSLPL 517

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
               +I  RR                 I       +  S  +   +      + L++   
Sbjct: 518 TATRTILGRR----------------RIWPRFGAGITASKFQMYNTPCQGTGADLIKL-- 559

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
                           ++ E  +  +     I+ ++HDEI+ E P+         L  +M
Sbjct: 560 ----------------VMAEVYEKLSDEEARIIGSIHDEIILEVPEDRAEEYAARLKEIM 603

Query: 652 TK 653
            +
Sbjct: 604 ER 605


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 94/255 (36%), Gaps = 52/255 (20%)

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           + TL +A++  DGR+  T     A+ TGR S      QN+P +                 
Sbjct: 8   VQTLMDAINPRDGRIHTTFTQTVAA-TGRLSSVDPNLQNIPNR----------------- 49

Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +RS  +   G   L+ AD + +E R++A ++G++  IKAF +G D +
Sbjct: 50  -------NATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFH 102

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465
               +  +  P+D+V+ +QR   K M   L Y     G ++     +        ++ Q 
Sbjct: 103 RYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYGLSTYGLSQQLGIPSKEAAALRSRYFQT 162

Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 + +                     +    S +   +D     A+   + GTA +
Sbjct: 163 FGKVHDYLESLVSNARNTGYTQTMFGRRRYFPALTSANRVARDAAERGALNAPIQGTAAD 222

Query: 505 LVKKAWRAKHQGVLQ 519
           ++K A     + +  
Sbjct: 223 IMKIAMIRVDRALRD 237



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + DI+   M    +          IVL +HDE+V E        V  L  
Sbjct: 216 IQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKRVTELVR 269


>gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179]
 gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179]
          Length = 861

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/520 (16%), Positives = 166/520 (31%), Gaps = 101/520 (19%)

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--- 154
                  LP+  ++  L L +  + +   +  AL   F   S  S P+    A  ++   
Sbjct: 374 KQRYQLDLPTHYEDVAL-LAWLHNSSLEPQMSALGRLFSLESFSSKPHAPLNAAQMESNT 432

Query: 155 -----AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
                A+  + +    D+    +L + L      E  L  +   +  +G+ +DL     L
Sbjct: 433 RLIARAYTHYKDTLSPDL---LQLAREL------EYPLLAILLEMQAQGFSLDLAYFQTL 483

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------- 258
           ++  AQ    L   I  L    I +   T     +L+   G+    + +           
Sbjct: 484 KQEFAQSLNTLQNQIHALAHTDI-NVNSTKQWAHFLYQDLGLQAKGVKKIKTGFSTDEAS 542

Query: 259 -GTLKSILSHSNITQL----AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
              L+     + +  +      D +L            +  L    +  G++      + 
Sbjct: 543 LKALQETYQGARVQGVEVATLLDALLGYRELFKLQSTYVEPLLTQ-NQHGKIHTIFYQHT 601

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372
            + + R S      QN+P                     I  PLG     +    I S  
Sbjct: 602 -TASSRLSSAHPNLQNIP---------------------IRTPLG---KKIAHGFIPSAP 636

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              L+ AD + IE R+LA  + +   I+AF   +DI++ T    FN         +R   
Sbjct: 637 DLLLLGADYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTALALFN------DPHKRHAA 690

Query: 433 KVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA---------- 478
           K +  AL Y  G +      K         + ++     +   F D  +A          
Sbjct: 691 KSINFALIYGMGPRRLADTLKISQQEAKDYIDRYFNAFPTIKDFLDQLKARILQEGKITT 750

Query: 479 ----ESHHLW------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
               + H  +      +Q +Y    +     G+A +LVK A    H  + +  +      
Sbjct: 751 LLGHQRHFDFTNATPKLQAEYLREGINTLFQGSASDLVKLAMLKIHAHIAKYPR------ 804

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
              V+    +    +  VP+  + +   ++  ++     L
Sbjct: 805 ---VKMLVQVHDEIILEVPKTQVSQIALEIKTIMEGIYPL 841


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 93/245 (37%), Gaps = 51/245 (20%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGR+  T +   A+ TGR S      QN+P +                          A
Sbjct: 13  SDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------DPA 47

Query: 361 SDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  
Sbjct: 48  GREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGV 107

Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474
           P+D+++ +QR+  K M   L Y     G ++             +Q+         + + 
Sbjct: 108 PVDEITPDQRSHVKAMSYGLAYGLSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLES 167

Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                               +   +S +  ++D     A+   + G+A +++K A     
Sbjct: 168 LVSSAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRAD 227

Query: 515 QGVLQ 519
             + +
Sbjct: 228 DALRE 232


>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
 gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
          Length = 1588

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 93/625 (14%), Positives = 190/625 (30%), Gaps = 145/625 (23%)

Query: 27   QAVITLCAYA--WDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
               + +  +A  W        D  ++   +  DL++++ +E             I+    
Sbjct: 1064 SPEVPISGFALFWGHSTAYYLDVAKKRETI--DLIRHIVNEQQKT---------IIMYNC 1112

Query: 84   LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
                    +W      +R +          +A    +   + +    L+  +C       
Sbjct: 1113 KQQIKTLHKWHGVEFRSRVHDPK-------VADWLLQPEGQDKTLHQLVETYCPELPLDQ 1165

Query: 144  PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
              D    +  + +     +  +++E        L+ + D E  +  +   I   G   ++
Sbjct: 1166 GQDAKLRSIFECY--LSWHVLKNIEVELS-KSNLLTVFDTEMSIMRILANIELAGIGANV 1222

Query: 204  DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
              +  L +L+ +E K ++     +       +     L   L         + S+ +L+ 
Sbjct: 1223 STLSNLVDLLTRELKAIERQGHAIAGRHFSFASSR-QLAKILQS------DNNSKKSLQK 1275

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                 N   LA  ++  R  S+ +    L  L   V  +GR+ G    + A  TGR +  
Sbjct: 1276 -----NDNPLASLILKWRKISA-TIGKTLQPLIRLV-ENGRIFGCYVTHTA--TGRITMH 1326

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                QN+ +    + +                         R   + S G  +V AD   
Sbjct: 1327 EPNLQNVAKDFDIDGVEVSC---------------------RKAFVPSQGHVMVSADFCQ 1365

Query: 384  IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
            +E RVLA ++ ++          DI+    AK  N   ++V++E R   K +   + Y  
Sbjct: 1366 LELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQIIYGIIYGM 1425

Query: 444  GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
            G+K    +A     D  Q ++ +                                     
Sbjct: 1426 GSKA---LAEQLNTDEAQATRFM------------------------------------- 1445

Query: 504  ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                + +R  + GV +   ++ E                          R    V  +  
Sbjct: 1446 ----QTFRNAYPGVQKYISEIIET------------------------CRKTGFVETLAG 1477

Query: 564  SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----- 618
              R L + + K          SQ  R+           +Q  + D++   M         
Sbjct: 1478 RRRFLAHINHKN-----GAVKSQAERQA------VNTTIQGSAADLVKMAMVRLETVFLG 1526

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFS 643
            +    +VL +HDE++ E P+    S
Sbjct: 1527 EKEVKLVLHLHDELLYEVPEGSLGS 1551


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 148/438 (33%), Gaps = 63/438 (14%)

Query: 69  VAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM- 125
           V HN+ ++  +F K LG+ +     + + T +LA     P   K      +  E      
Sbjct: 93  VLHNASYDLQVFDKCLGVPMEELWPKVVDTKILAHLVD-PRGRKEGGTGHSLEELTRHYL 151

Query: 126 -----EEGKALIARFCKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                +  K L+    K    +      + +     +QL+      D      L ++L P
Sbjct: 152 DADVADTVKTLMTDLAKEEKTTKANVWKKVSLDNPRYQLY---AGMDPILACRLRQKLSP 208

Query: 180 LSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           L           ERDL  +   +   G+ +D+D   KL   +  +     E  +      
Sbjct: 209 LVPVSARGLVGYERDLAEVCSVMERTGFLLDVDYTRKLSTRLRLDESVASEIALSYGCEN 268

Query: 232 IRSSRQTY----ALRMYLFLITGIDLVDMS-EGTLKSILSHSNITQLAKDLILNRLASSG 286
           + S+ Q       +  ++   T           TL + L+  +  + A+ +I  + A   
Sbjct: 269 VNSTDQVADVLEQMGAWIPGRT--PTGKKQVNDTLLAQLAK-DGNEFARSVIDAKKAGKW 325

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++   + V  DGR   ++    A RT R S      Q LP               
Sbjct: 326 RKTW-VDRFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLP--------------- 368

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R C +A  G+ +   D    E RVLA ++G+   I+AFA G+
Sbjct: 369 ------------AGDWMIRRCFLADEGELIASVDYQAQELRVLAALSGDPTMIRAFAEGQ 416

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQF 462
           D+++ T   AF   I K   E R   KV+     Y GGAK                +  F
Sbjct: 417 DLHLLTARAAFGDHITKDDPE-RKYAKVVNFGRVYGGGAKTVSEQTGLGFMAAKQVVDGF 475

Query: 463 SQNVKSTSTFEDWEQAES 480
            +            Q E+
Sbjct: 476 DKAYPGVRVLSHKLQEEA 493



 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDTPY-FSVGTLCSLM 651
           ++Q+ SRD+  + +    + G+  ++ L +HDE+++  P     +    +  +M
Sbjct: 521 LIQSTSRDVTGKALIRLHRAGFGPNLRLPIHDEVLASVPAAKARWGANRIAEIM 574


>gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 132

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/131 (46%), Positives = 77/131 (58%), Gaps = 6/131 (4%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQA 604
           M+  +  + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA
Sbjct: 1   MQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 60

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLK 664
           +SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL 
Sbjct: 61  VSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLA 120

Query: 665 AEGYEAKRYRK 675
           AEG+E  RYRK
Sbjct: 121 AEGFETHRYRK 131


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 160/490 (32%), Gaps = 79/490 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L  +  D TV  +AHN+ F+  +  +  GI +    W   +  A        L     
Sbjct: 187 ETLRPFYEDPTVGKLAHNAKFDIHMLDRE-GIKLRGLTW--DTQEAMRL-----LNENEP 238

Query: 115 ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           +      +TK    E       F K             + V   ++   Y  +D + T +
Sbjct: 239 SFALKNLVTKYLRIESSTYGDLFGKIGF----------DEVDDLEIALAYAAKDGDVTLK 288

Query: 173 LF----KRLIPLSDGER-------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L     + L  + +  R        L  + Q +   G+ IDLD   +    +     +L 
Sbjct: 289 LRNFQREHLAKMPEVLRYYETVEVPLISVVQQMETTGFDIDLDYAEEYGRELKSGLDRLY 348

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           +++++    +  +      L+  L  +TG  L       +   L+      + K L+  +
Sbjct: 349 DELIEELGDV--NINSPAQLKPALERVTGESLASTDAKKVLKPLAKKY--PVVKKLLEYK 404

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS--GCVFQPQNLPRQERSEE 338
             S       +N L E +    G+L       GA +TGR+S  G     QN P++     
Sbjct: 405 -DSFKLYSTYINALPELIDQKTGKLYTNFNPNGA-KTGRFSSGGTGVNLQNQPKKA---- 458

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                     R   +A  G  ++  D +  E R LA+   +   
Sbjct: 459 --------------------------RKLFVAPEGYAILGGDWSQQEYRCLAYFTQDPKL 492

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAK----VFKTMA 452
           +  +  G+D+Y +  A+ F  PI++       R   KV+ LA+ Y GGA           
Sbjct: 493 VDNYFRGDDLYASIAAEVFGKPIEECGDGSVYRKQAKVIMLAVAYGGGANMLKDAIGVEK 552

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---HLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 L  F +       + +  Q        +WM     +  + D    +A       
Sbjct: 553 HEAQKFLDSFFERFPVVKEWVESNQKFVKKHGFVWMDHLQRKRRLPDAKDRSAKGHYSAV 612

Query: 510 WRAKHQGVLQ 519
           +       +Q
Sbjct: 613 FTQSTNARVQ 622


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   IA+ G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ F 
Sbjct: 4   AEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFG 63

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
               +V+ +QR I KV+   L Y       A           L + ++       + + +
Sbjct: 64  VTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQYME 123

Query: 475 WEQAES-----------HHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRAK 513
             +A +             LW+          +      A+   + GTA +L+K +  A 
Sbjct: 124 NTRASAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAV 183

Query: 514 HQ----------GVLQLWKDL 524
            Q           ++Q+  +L
Sbjct: 184 DQWLTRDKLASRMIMQVHDEL 204


>gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
          Length = 642

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 99/638 (15%), Positives = 206/638 (32%), Gaps = 155/638 (24%)

Query: 62  RDETVMCVAHNSLFERILF-KKTLGIDIPSKRWIC-TSVLARTNGLPSSLKNACLALNFS 119
            +E+++ VAHN  FE     +  + I  P    +  + +  ++ G   +L+++ L L   
Sbjct: 95  HNESLIKVAHNISFESSFLCEYGIVIKEPVFDTMLGSMLTFKSFGEFRTLRDSGLKLLAK 154

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E   +     + +       ++   +D   + H +       Y   D +    L+   + 
Sbjct: 155 EIFNEDLPSFSHV-------VNGTHFDNLHSEHKET----VRYACADSDYALRLYNWCME 203

Query: 180 LSD------------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             +             E    +    +   G  ++ +L+ +      +E +    +I+  
Sbjct: 204 WFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEFCKREILSF 263

Query: 228 TDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-------------TQ 272
            +  +   S+ QT   + +LF    + ++ + E    S+   S I             T 
Sbjct: 264 ANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGDPSLDDESLILLEEWCIRNFKKGTY 323

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           L + +  ++  S   +   +  L + +    G++       GA  TGR+S      QNLP
Sbjct: 324 LIECIKRHKRVSKLKST-YIEALGKLLNCETGKIHTDFFSMGA-ETGRFSSRNPNLQNLP 381

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R++                             +R   I S     +  D + IE RV A+
Sbjct: 382 RKDNDHLG------------------------IRKLFIPSPNHVFLDFDFSQIELRVGAY 417

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKVMELALGYQGG 444
              +   I AF    DI+  T +  +N P+++ +       K++R I K     + +   
Sbjct: 418 YCKDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLF 477

Query: 445 AKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
            K   KT+    G+++ +                                         C
Sbjct: 478 PKGLQKTLMYKGGINISE---------------------------------------KDC 498

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           E + +  +  +   L  W+          ++   ++A R     R   RR+ +D+     
Sbjct: 499 ERIIRNIKDGYP-RLSTWQ----------KDTVKVAAYRGYTRSRTGRRRYLKDMKSKDW 547

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
           + R +                    R            +Q  + DI+   M    +    
Sbjct: 548 NKRAVS------------------ERCALNTP------IQGTAADIIKIAMARILRELPE 583

Query: 620 NGY-DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
            GY   +L +HDE++ E  +         +   M + P
Sbjct: 584 RGYIKPLLQIHDELLFEVREDKVNEAIVFIKDCMERTP 621


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 32/236 (13%)

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L          + ILN    +      +  L + +    G++    Q    ++TG
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQ-QTLTQTG 59

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLV 377
           R S      QN+P +                              +R   +    G KL 
Sbjct: 60  RLSSVDPNLQNIPIR------------------------MEEGRKIRQAFVPQQAGWKLF 95

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
            +D + IE RVLA I+G++   +AF  G+DI+ +T  + F     + V+   R   K + 
Sbjct: 96  ASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVN 155

Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
             + Y     G ++            + ++ +       F +    E+      + 
Sbjct: 156 FGVVYGISDYGLSQNLNITRKAAQEFIDRYFEKYPGVKQFMEDIVKEAKENGYVET 211


>gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
 gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
          Length = 642

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/638 (15%), Positives = 206/638 (32%), Gaps = 155/638 (24%)

Query: 62  RDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWIC-TSVLARTNGLPSSLKNACLALNFS 119
            +E+++ VAHN  FE   L++  + I  P    +  + +  ++ G   +L+   L L   
Sbjct: 95  HNESLIKVAHNIAFESSFLYEYGIVIKEPVFDTMLGSMLTFKSFGEFRTLRECGLKLLAK 154

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E   +     + +       ++   +D   + H +       Y   D +    L+   + 
Sbjct: 155 EIFNEDLPSFSHV-------VNGTHFDNLHSEHKET----VRYACADSDYALRLYNWCLE 203

Query: 180 LSD------------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             +             E    +    +   G  ++ +L+ +      +E +    +I+  
Sbjct: 204 WFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEFCKREILSF 263

Query: 228 TDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-------------TQ 272
            +  +   S+ QT   + +LF    + ++ + E    S+   S I             T 
Sbjct: 264 ANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSLDDESLILLDEWCLRNFKKGTY 323

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           L + +  ++  S   +   +  L + +    G++     F   + TGR+S      QNLP
Sbjct: 324 LIECIKRHKRVSKLKST-YIEALGKLLNCETGKIHTDF-FSMGTETGRFSSRNPNLQNLP 381

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           R++                             +R   I S     +  D + IE RV A+
Sbjct: 382 RKDNDHLG------------------------IRKLFIPSPNHVFLDFDFSQIELRVGAY 417

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKVMELALGYQGG 444
              +   I AF    DI+  T +  +N P+++ +       K++R I K     + +   
Sbjct: 418 YCRDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLF 477

Query: 445 AKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
            K   KT+    G+++ +                                         C
Sbjct: 478 PKGLQKTLMYKGGINISE---------------------------------------KDC 498

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           E + +  +  +   L  W+          ++   ++A R     R   RR+ +D+     
Sbjct: 499 ERIIRNIKDGYP-RLSTWQ----------KDTVKVAAYRGYTRSRTGRRRYLKDIKSKDW 547

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----T 618
           + R +                    R            +Q  + DI+   M         
Sbjct: 548 NKRAVS------------------ERCALNTP------IQGTAADIIKIAMARILRELPE 583

Query: 619 KNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655
           +     +L +HDE++ E  +     ++  +   M + P
Sbjct: 584 REYIKPLLQIHDELLFEVREDKVNEAIAFIKDCMERTP 621


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 32/236 (13%)

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L          + ILN    +      +  L + +    G++    Q    ++TG
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQ-QTLTQTG 59

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P +                              +R   +    G KL 
Sbjct: 60  RLSSVDPNLQNIPIR------------------------MEEGRKIRQAFVPQQEGWKLF 95

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
            +D + IE RVLA I+G++   +AF  G+DI+ +T    F     + V+   R   K + 
Sbjct: 96  ASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVN 155

Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
             + Y     G ++            + ++         F +    E+      + 
Sbjct: 156 FGVVYGISDYGLSQNLNITRKAAQEFIDRYFDKYPGVKQFMEDIVKEAKENGYVET 211


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F
Sbjct: 5   NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIF 64

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
              +D+V+ EQR   K +   L Y       +       +     ++++ Q   +   F 
Sbjct: 65  GLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFM 124

Query: 474 ---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                                   + +S +   +      A+   + GTA ++
Sbjct: 125 TGIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADI 177


>gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515]
          Length = 316

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 53/273 (19%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +  +++L R          +  L +       ++         ++TGR S      QN+P
Sbjct: 10  IIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFN-QTLTQTGRLSSVDPNLQNIP 67

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
            +                              +R   + S  G K+  AD + +E RVLA
Sbjct: 68  IR------------------------LEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLA 103

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446
            I+ ++  I AF +  DI+  T    F+   ++V    R   K +   + Y     G ++
Sbjct: 104 HISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ 163

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485
                       + ++  +  +   +                         +  S +  +
Sbjct: 164 NLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNV 223

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +      A+   + G+A +++KKA     + ++
Sbjct: 224 RGFAERTAMNTPIQGSAADIIKKAMILMSERLV 256


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 73/211 (34%), Gaps = 30/211 (14%)

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299
           LF+   +    + +G          + +L     +  L      + KL     + L + V
Sbjct: 2   LFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKLV 61

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             + RL  T        TGR S      QN+P +                          
Sbjct: 62  DKNYRLHTTFN-QDVVSTGRLSSTHPNLQNIPIRS------------------------T 96

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R+  IA     LV AD +  E R+ A +AG++  I  F N  DI+  T +  +  
Sbjct: 97  LGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKI 156

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           P+D+V+  QR   KV+   + Y         
Sbjct: 157 PMDQVTSNQRRNAKVINFGVLYGMSPHGLSA 187


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 101/568 (17%), Positives = 196/568 (34%), Gaps = 94/568 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET         G+  Y+      L         V+   +TE   +P + L+ L  
Sbjct: 38  LAVDTET--------TGLDIYSADFRCRL---------VQFGTQTESWVLPIEDLEMLGR 80

Query: 64  ETV--------MCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNAC 113
           E V          V  N+ ++  +  +  GI + S   + + T +LA+    P       
Sbjct: 81  EEVHEALDVLNKIVMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVD-PRPFGAGG 139

Query: 114 LALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKR 165
              +  E + +       E  K L+A+  K    +     +  +  H +    +  Y   
Sbjct: 140 FGHSLEELIAEFISKEQAENVKGLMAKLAKEHKTTKAKIWSTIDLYHPE----YLTYAGM 195

Query: 166 DVEATRELFKRLIPL-SDGERDLWLLDQTIND-------RGYRIDLDLVLKLQELIAQER 217
           D   T  +   L PL  D  R L   +  I++       RG+ +D++   +L +      
Sbjct: 196 DTVFTARICSALAPLVPDVSRPLVPYEHKISEICSYIDRRGFLLDVEYSQQLAD------ 249

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
                                     +L      + V ++E  ++ + +  ++ +  ++L
Sbjct: 250 -------------------------KWLGEQQVWEAVLLNEYGIEKVNATEDVAEAFEEL 284

Query: 278 ILNRLASSGSAILKLNT--LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                A + S   K++    ++ +++ G +         A + G+W     Q     R  
Sbjct: 285 GHKFTAFTDSGKRKVDKGFYADMIAAGGEKAHLAEMVQEAKKLGKWRTSWVQTFLDTRDS 344

Query: 335 RSE-EILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
                     +QA     +I    A  L  +   VR C +A  G  +   D    E RVL
Sbjct: 345 EDRCHTFVNPLQARTSRMSITGIPAQTLPASDWTVRRCFLADPGHVMASIDYQAQELRVL 404

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++G+   I+AF +G D+++ T   AF   I K   E R   K +     Y GGA    
Sbjct: 405 AALSGDRTMIQAFKDGADLHLMTARAAFGDHITKDDPE-RKYAKTVNFGRVYGGGANTV- 462

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-VKDKLIGTACELVKK 508
             A   G+ ++   Q V      + +     +   + ++      + + +         +
Sbjct: 463 --AEQTGISIETAKQVVDG--FDKAYPGVTRYSRKLANEAKRNGYIINPMGRRLPVDRSR 518

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            + A +  +    +D+T      + E G
Sbjct: 519 TYSALNYQIQSTSRDVTCKALIRLHEAG 546



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETP-DTPYFSV 644
            R RTY        +Q+ SRD+ C+ +    + G+   L   +HDEIV+  P +   +  
Sbjct: 515 DRSRTYSA--LNYQIQSTSRDVTCKALIRLHEAGFTPYLRLPIHDEIVASLPAEKANWGA 572

Query: 645 GTLCSLMTK 653
             +  LM +
Sbjct: 573 REIARLMAE 581


>gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 886

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 133/384 (34%), Gaps = 69/384 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            +  L  +   I + G  I    +LK Q+   ++  K  +  +        +   +  L+
Sbjct: 484 IDMSLLPILAEIENNGVLI-KKKILKKQKKNHEKTLKKLKKKIFKITKEKFNINSSKQLQ 542

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-----LNTLSE 297
             LF    +  +  ++       +   + +L+K  IL ++      I K     L  L +
Sbjct: 543 NILFKKFNLPKIYKTK-LGNISTNEIVLKKLSKIHILPKIILQFRLIKKIINTYLRNLIK 601

Query: 298 AVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +++    R+  T      + TGR S      QN+P + +                     
Sbjct: 602 SINNKTNRIHTTYNQIN-TSTGRLSSKNPNLQNIPIKTK--------------------- 639

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   I      L+ AD + IE R++A  + +   IK     +DI+++T +  
Sbjct: 640 ---IGRKLRIAFITKKKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHISTASHI 696

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           FN P++K+ K  R I K +  ++ Y     G +K            + ++         F
Sbjct: 697 FNKPLEKIKKYHRNIAKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRF 756

Query: 473 ---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                                       S ++++++    F +   +  TA +++KK+  
Sbjct: 757 IKNTYKTAKKRGYIKTLFKRKLYIPNINSKNIYLKNSAKRFCINLMIQNTASDIIKKSMI 816

Query: 512 AKH-----------QGVLQLWKDL 524
             H           + ++Q+  +L
Sbjct: 817 TLHHLFKKKFPKDIKIIMQIHDEL 840



 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
              ++    +   +  K+  +I     R+L   ++     YL  +  +            
Sbjct: 749 KYNKIKRFIKNTYKTAKKRGYIKTLFKRKLYIPNINSKNIYLKNSAKRFC---------I 799

Query: 599 ENIVQAISRDILCEGMKNATK-------NGYDIVLTVHDEIV 633
             ++Q  + DI+ + M                I++ +HDE++
Sbjct: 800 NLMIQNTASDIIKKSMITLHHLFKKKFPKDIKIIMQIHDELI 841


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/487 (16%), Positives = 155/487 (31%), Gaps = 105/487 (21%)

Query: 130  ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI---------PL 180
             ++ RF    +D      +  +     Q    Y  RD      L +RL           +
Sbjct: 1729 QVVERFLGVLMDKRMQ-ASDWSSPHLSQEQLLYAARDAAVMLPLQQRLQRKLEAYDLQEV 1787

Query: 181  SDGERDLWLLDQTINDRGYRID----LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             D E         +   G +I+     +L   L++   + RK+L  ++    D    +  
Sbjct: 1788 MDVEMRCLRPVVAMELNGMQIEHARWKELEAHLRKEEVKARKRLAAELH--VDETTVNFN 1845

Query: 237  QTYALRMYL-------------------------FLITGID-----------LVDMSEGT 260
                +   L                             G+            L D S+GT
Sbjct: 1846 SQKQMLDALRAIGIPSPPPDRPASRSRGARPSAFSEQRGLGFDQPAELEDTLLKDTSDGT 1905

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
            L  +  +  +  L          ++ +    ++ L + ++S  G++  +L   GA  +GR
Sbjct: 1906 LARLTQYPAVQALRDYR-----KAAKAITTFVDKLPQHINSVTGKIHCSLHQCGAG-SGR 1959

Query: 320  WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +S      Q +PR+ R                            V S  +A    K ++A
Sbjct: 1960 FSCDSPNLQQIPRERRFRACF-----------------------VPSAKVAGRPGKFIIA 1996

Query: 380  DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            D + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R + K +   L
Sbjct: 1997 DFSQIELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAKAVNFGL 2056

Query: 440  GYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAESHHLWMQDQYPEF------ 492
             Y   A  F+  AS          +        F  +      H   + + P        
Sbjct: 2057 IYGMSADRFRGYASSAYGVQMTPQEARAFHAKYFSSYAGITRWHQRQKAEQPRETRTRAG 2116

Query: 493  ------------AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGG 536
                        ++   + GT+ ++ K++       +     +L   + +     V E  
Sbjct: 2117 RRALFDYFAFTKSLNYPIQGTSADITKESLVRLQDKLAPLGGRLVMCVHDEIIAEVPEDK 2176

Query: 537  SISARRV 543
            +    R+
Sbjct: 2177 AEEGLRI 2183



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 602  VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
            +Q  S DI  E +          G  +V+ VHDEI++E P+   
Sbjct: 2134 IQGTSADITKESLVRLQDKLAPLGGRLVMCVHDEIIAEVPEDKA 2177


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 142/451 (31%), Gaps = 106/451 (23%)

Query: 130  ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---------LIPL 180
             ++ RF    +D      +  +     Q    Y  RD      L +R         L  +
Sbjct: 2094 QVVERFLGVLMDKRMQ-ASDWSSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEV 2152

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--LTDGIIRSSRQT 238
             D E         +   G +ID     +L+  + +E +K  + +      D    +    
Sbjct: 2153 MDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQ 2212

Query: 239  YALRMYL-------------------------FLITGID----------LVDMSEGTLKS 263
              +   L                          L  G D          L D S+GTL  
Sbjct: 2213 KQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLAR 2272

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
            +     +  L          ++ +    ++ L E ++S  G++  +L   GA  +GR+S 
Sbjct: 2273 LSQFPAVQALRDYR-----KAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFSC 2326

Query: 323  CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-----GKKLV 377
                 Q +PR                                R+C + S        K +
Sbjct: 2327 DSPNLQQIPR----------------------------ERRFRACFVPSKTVAGRPGKFI 2358

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            +AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R + K +  
Sbjct: 2359 IADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNF 2418

Query: 438  ALGYQGGAKVFKTMASHCGLDLQQFSQNVK-STSTFEDWEQAESHHLWMQDQYPEF---- 492
             L Y   A  F+  AS          +        F  +      H   + + P      
Sbjct: 2419 GLIYGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQKAEQPRETRTR 2478

Query: 493  --------------AVKDKLIGTACELVKKA 509
                          ++   + GT+ ++ K++
Sbjct: 2479 AGRRALFEYFAFTKSLNYPIQGTSADITKES 2509



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 602  VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
            +Q  S DI  E +          G  +V+ VHDEI++E P+   
Sbjct: 2498 IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPEEKA 2541


>gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 280

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 52/250 (20%)

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            + SDG++         ++TGR S      QN+P +                        
Sbjct: 1   MIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR------------------------ 35

Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+ +T  + 
Sbjct: 36  LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRV 95

Query: 417 FNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           F     + V+   R   K +   + Y     G ++            +  + +       
Sbjct: 96  FGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKE 155

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           + +                          S +  ++      A+   + G+A +++K A 
Sbjct: 156 YMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAADILKIAM 215

Query: 511 RAKHQGVLQL 520
               + + + 
Sbjct: 216 IELDKRLKET 225



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M    K   + G    +   VHDE+V E P+    S+  L   +M + 
Sbjct: 203 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 262


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 98/279 (35%), Gaps = 59/279 (21%)

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ILN    S       + L + V   DGR+  +     A+ TGR S      QN+P +   
Sbjct: 42  ILNWRHLSKLKGTYTDALIKQVDPLDGRIHTS-FSTTATATGRLSSSNPNLQNIPIRS-- 98

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                    + +R   IA  G K++ AD + IE R+LA +A   
Sbjct: 99  ----------------------EEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVA 136

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
              +AFANG+DI+  T  + F     ++ ++ R   K +   + Y     G AK      
Sbjct: 137 AFKEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITI 194

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491
           +     +  +         + +   + +                        +++     
Sbjct: 195 AEAAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAER 254

Query: 492 FAVKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524
            A+   L GTA +++K+A           + +LQ+  +L
Sbjct: 255 AAINAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDEL 293



 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPS 656
           Q  + DI+               I+L VHDE++ E  D     +   +  +M     
Sbjct: 262 QGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE 318


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 130/710 (18%), Positives = 240/710 (33%), Gaps = 127/710 (17%)

Query: 6   IDIETRSPQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
           IDIET       K G +  Y     I L   A+D   + L+          + L+ L D+
Sbjct: 14  IDIETW---DGKKGGSLDPY--SGKIALVQIAYDRNNIVLYRPW--EKNFEEALKVLSDK 66

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART----NGLPSSLKNACLALN--- 117
            V+ V HN  F+    K     +I  +    T + ++        P  +     AL    
Sbjct: 67  DVLKVGHNLKFD---LKFFYMNNIYPEPIFDTMIASQMIYAGLDEPDEISEVLEALKDDL 123

Query: 118 ----------FSEHLTKMEE-GKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKR 165
                     F +  TK  +   +L A   +      P D   +N   +  +   EY   
Sbjct: 124 TTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGELSEAQKEYAIN 183

Query: 166 DV----EATRELFKRLIPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           DV    + + EL+K++  L+       E     +   +   G +ID +   K  E   QE
Sbjct: 184 DVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVKIDKEGWKKKMEKENQE 243

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSNITQLAK 275
             +L++++ K       S +Q+  + + LF     + +++ S   +  I    N+++L  
Sbjct: 244 LLELEKELKKEIYEKFVS-KQSEKMMVGLFEDAEYEKINLNSPLQMAKIFGLPNVSKLTL 302

Query: 276 DLILNRLASSGSAILKLNTLS--------EAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           + I +          K   L         E ++ + RL  +      + TGR S      
Sbjct: 303 EKIEDPTIKKYVEYKKKAKLVTTYSKEYLEKLTENNRL-MSDYSQTKTATGRISSSNPNL 361

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                 +  I A  G   V AD + +E R
Sbjct: 362 QNVP------------------------------SWFKRYITAEEGYVPVFADYSQVELR 391

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQGGA- 445
           +LA+++G++  I +  N +D++     K +  P D+ V  E R   K +  A+ Y   A 
Sbjct: 392 ILAYLSGDEAMIDSC-NSKDMHSENARKIYKIPPDQPVPPELRKKAKTVSFAIPYGSSAY 450

Query: 446 ----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
               +   +  +     ++ F  +      F +     + +   +D         K+  +
Sbjct: 451 GLVVRGMFSSLAEAEEAIEGFFNSFPKVKEFLEKSAKSAQNGITRDALGRVRNYKKIYIS 510

Query: 502 ACE--LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             E   +K        G+ +      + F   V E  S            +    ++ + 
Sbjct: 511 EDEKGALKILMFRLPSGISK------DEFIKEVLEKNS------FKDAAKIFGMDEQMLQ 558

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN--- 616
           + + +                   T +L +    G     + +QA S  I    M +   
Sbjct: 559 LAISA----------------YEKTKKLAKIAREGQ---NHPIQATSASITKTAMVDLLE 599

Query: 617 -ATKNGYD-IVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN-PSWAKGLP 662
             +  GY  + LTVHD I  E      F ++  +  +M +  P    G+ 
Sbjct: 600 YLSMTGYGYMTLTVHDSIFFEIKKEFIFDALPKIKEIMEQAGPKVVPGII 649


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 143/411 (34%), Gaps = 71/411 (17%)

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D +L+  +   I  + +++  + V+       S  +      +L    GI L    +
Sbjct: 1   MPVDKNLLKNMLTDIQSKYQRMYIEFVRNYGVDPFSPAKVSN---WLVNKVGITLPKTQK 57

Query: 259 GTLKSILSHSNITQLAKDLI-LNRLASSGSAILKLNTLSEAVSSDG------RLRGTLQF 311
           G L S        +  K++  L  + ++   + KL  L+E   +D       R+    + 
Sbjct: 58  GALSSQDKALKKYEHLKEVRQLMEIRTTKKLLDKLKELNEHTRNDPSDSDTVRIHSQFRQ 117

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA  TGR S      QN+P                                +R     S
Sbjct: 118 IGAP-TGRMSSSKPNLQNIP------------------------------PELRVLFRPS 146

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  ++VAD + IE R+ A    ++  I AF  G+D++  T +       ++++KE+R +
Sbjct: 147 KGYSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQL 206

Query: 432 GKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
            K +   L Y    +     A  + G+D+            F+ +   +  H   +++  
Sbjct: 207 AKAINFGLIYGISPRSLMEYARNNYGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKLN 266

Query: 491 EF--------------------AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
           +                     AV   +  +  +++K A      G+L+  KDL      
Sbjct: 267 KHRQITVQSLLGRRMKVSRFTDAVNYPIQASGSDMLKMA--VNFFGILK--KDLNAYIVN 322

Query: 531 VVQEGGSISAR-----RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +V +   + A+     +  N+    M++  + +   +P            +
Sbjct: 323 LVHDEIIVEAKEDITVQAKNILEESMKKAGKILLKKVPVEYEANIVKSWAE 373


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 136/401 (33%), Gaps = 80/401 (19%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
           T+   G+ +D+     LQ+   +  + L++ +  +    + +   +      L+   G++
Sbjct: 462 TMQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQVLYEHLGLE 520

Query: 253 LVDMSEGT------------LKSILSHSNITQLAKDLILNRLASSGSAILKLNT------ 294
              + +G             L++  + S +  +   ++L +L  +   I KL +      
Sbjct: 521 SKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKL-LNYREIFKLQSTYVEPF 579

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L       G++  T  +   + + R S      QN+P +      + +            
Sbjct: 580 LKRHTQ--GKIHTTF-YQNKTASSRLSSANPNLQNIPIRHDLGRKIARG----------- 625

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                         IAS G  L+  D + IE R+LA  + +   +KAF   EDI++ T  
Sbjct: 626 -------------FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTAT 672

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
             F       ++ +R I K +   L Y  G    A+  +         ++++     +  
Sbjct: 673 ALFG----NQAQAKRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYMERYFNKFPTIK 728

Query: 471 TFEDWEQA--------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            F +  +A                    +     +   Y    V     G+A +LVK A 
Sbjct: 729 NFLEELKARILQEGQVTTLLGHVRRFSFKQASPKLHADYLREGVNTLFQGSASDLVKLAM 788

Query: 511 RAKHQ-----GVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            A +Q       +++   + +     V E  +   ++    
Sbjct: 789 LAIYQKYESRADIKMLVQVHDELILEVSEIEARELQQEIKT 829


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 136/401 (33%), Gaps = 80/401 (19%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
           T+   G+ +D+     LQ+   +  + L++ +  +    + +   +      L+   G++
Sbjct: 462 TMQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQVLYEHLGLE 520

Query: 253 LVDMSEGT------------LKSILSHSNITQLAKDLILNRLASSGSAILKLNT------ 294
              + +G             L++  + S +  +   ++L +L  +   I KL +      
Sbjct: 521 SKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKL-LNYREIFKLQSTYVEPF 579

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L       G++  T  +   + + R S      QN+P +      + +            
Sbjct: 580 LKRHTQ--GKIHTTF-YQNKTASSRLSSANPNLQNIPIRHDLGRKIARG----------- 625

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                         IAS G  L+  D + IE R+LA  + +   +KAF   EDI++ T  
Sbjct: 626 -------------FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTAT 672

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
             F       ++ +R I K +   L Y  G    A+  +         ++++     +  
Sbjct: 673 ALFG----NQAQAKRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYMERYFNKFPTIK 728

Query: 471 TFEDWEQA--------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            F +  +A                    +     +   Y    V     G+A +LVK A 
Sbjct: 729 NFLEELKARILQEGQVTTLLGHVRRFSFKQASPKLHADYLREGVNTLFQGSASDLVKLAM 788

Query: 511 RAKHQ-----GVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            A +Q       +++   + +     V E  +   ++    
Sbjct: 789 LAIYQKYESRADIKMLVQVHDELILEVSEIEARELQQEIKT 829


>gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus]
          Length = 1219

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 88/530 (16%), Positives = 152/530 (28%), Gaps = 131/530 (24%)

Query: 169  ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            A  E  K L      E     +   +   G     + V +  + +    + L    VK  
Sbjct: 733  AELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAV 792

Query: 229  DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
             G   +      +   LF    +    +  G++ +  S   +  L     +         
Sbjct: 793  GGRDFNLASPDQVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRG 852

Query: 289  ILKLNT----------------LSEAVSSDG----RLRGTLQFYGASRTGRWSGCVFQPQ 328
            + K  T                 S   +S G    R+  T     A RTGR S      Q
Sbjct: 853  VNKYKTTYVDKLAERALGAAAAESAVPASQGAGAARIHATWNQTSA-RTGRLSCSRPNLQ 911

Query: 329  NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
             +P+                         G+    VR    A+    L+ AD + IE RV
Sbjct: 912  QMPKGS-------------------DPLAGVEGVNVRDAFSATRSFTLMAADYSQIEMRV 952

Query: 389  LAWIAGEDWKIKAFAN------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
            LA    +      FA             G D+Y    A+ F      VS E+R   KV+ 
Sbjct: 953  LADACRDPGLRNLFATLGGTNDAGASTGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVVC 1012

Query: 437  LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
            L + Y  G                                             P+ A K 
Sbjct: 1013 LGITYGMGT--------------------------------------------PQVAKKL 1028

Query: 497  KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            ++  +  + + +++     G+        E F    +  G+    +++   +    R   
Sbjct: 1029 EITESQAQGLVRSFLKAFPGI--------EPFMAATRRYGTPCRHQIS---QRRFARENG 1077

Query: 557  DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
             V  +    R L     + + S    A +Q  R+         ++VQ  + DI+   M  
Sbjct: 1078 YVCTLTGRRRHL----PEINNSRNAAAKAQAERQA------VNSVVQGTAADIMKTAMVL 1127

Query: 617  ATKN-------------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
              +                 +++ +HDE+V E P      +  L  L+  
Sbjct: 1128 VARRLDAWRSSLDEGLDCPRLIMQIHDELVLECP-ACEEDLERLKGLLAD 1176


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 104/320 (32%), Gaps = 67/320 (20%)

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
             L     H  +  L       +L            L E V+ DGR+  T     A+ TG
Sbjct: 2   EELARYNPHPFLEALLYHRDRIKLLQIVRN------LRERVADDGRIHTTFGQTVAA-TG 54

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P +                         +    +R   +       L+
Sbjct: 55  RLSSIDPNLQNIPART------------------------VDGQKIREAFVPQKPYAALM 90

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R++A ++G++  + AFA+GED++ +  A  +    D+V+  QR+  K    
Sbjct: 91  TADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSY 150

Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------ 475
            L Y     G A             +  + +       + +                   
Sbjct: 151 GLAYGLSAYGLAAQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYTETMRGRR 210

Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK 522
               +  S +  + D     A+   + G+A +L+K A             + + +LQ+  
Sbjct: 211 RYLPELRSTNRNVADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHD 270

Query: 523 DLTEGFACVVQEGGSISARR 542
           +L    A    E      R+
Sbjct: 271 ELVLEVAPGETERLETLVRQ 290



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
           +Q  + D++   M     +         ++L VHDE+V E        + TL   
Sbjct: 236 IQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLETLVRQ 290


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 142/451 (31%), Gaps = 106/451 (23%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---------LIPL 180
            ++ RF    +D      +  +     Q    Y  RD      L +R         L  +
Sbjct: 219 QVVERFLGVLMDKRMQ-ASDWSSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEV 277

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--LTDGIIRSSRQT 238
            D E         +   G +ID     +L+  + +E +K  + +      D    +    
Sbjct: 278 MDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQ 337

Query: 239 YALRMYL-------------------------FLITGID----------LVDMSEGTLKS 263
             +   L                          L  G D          L D S+GTL  
Sbjct: 338 KQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLAR 397

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +     +  L          ++ +    ++ L E ++S  G++  +L   GA  +GR+S 
Sbjct: 398 LSQFPAVQALRDYR-----KAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFSC 451

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-----GKKLV 377
                Q +PR                                R+C + S        K +
Sbjct: 452 DSPNLQQIPR----------------------------ERRFRACFVPSKTVAGRPGKFI 483

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
           +AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R + K +  
Sbjct: 484 IADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNF 543

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVK-STSTFEDWEQAESHHLWMQDQYPEF---- 492
            L Y   A  F+  AS          +        F  +      H   + + P      
Sbjct: 544 GLIYGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQKAEQPRETRTR 603

Query: 493 --------------AVKDKLIGTACELVKKA 509
                         ++   + GT+ ++ K++
Sbjct: 604 AGRRALFEYFAFTKSLNYPIQGTSADITKES 634



 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
           +Q  S DI  E +          G  +V+ VHDEI++E P+   
Sbjct: 623 IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPEEKA 666


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 142/451 (31%), Gaps = 106/451 (23%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---------LIPL 180
            ++ RF    +D      +  +     Q    Y  RD      L +R         L  +
Sbjct: 219 QVVERFLGVLMDKRMQ-ASDWSSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEV 277

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--LTDGIIRSSRQT 238
            D E         +   G +ID     +L+  + +E +K  + +      D    +    
Sbjct: 278 MDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQ 337

Query: 239 YALRMYL-------------------------FLITGID----------LVDMSEGTLKS 263
             +   L                          L  G D          L D S+GTL  
Sbjct: 338 KQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLAR 397

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +     +  L          ++ +    ++ L E ++S  G++  +L   GA  +GR+S 
Sbjct: 398 LSQFPAVQALRDYR-----KAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFSC 451

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-----GKKLV 377
                Q +PR                                R+C + S        K +
Sbjct: 452 DSPNLQQIPR----------------------------ERRFRACFVPSKTVAGRPGKFI 483

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
           +AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R + K +  
Sbjct: 484 IADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNF 543

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVK-STSTFEDWEQAESHHLWMQDQYPEF---- 492
            L Y   A  F+  AS          +        F  +      H   + + P      
Sbjct: 544 GLIYGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQKAEQPRETRTR 603

Query: 493 --------------AVKDKLIGTACELVKKA 509
                         ++   + GT+ ++ K++
Sbjct: 604 AGRRALFEYFAFTKSLNYPIQGTSADITKES 634



 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
           +Q  S DI  E +          G  +V+ VHDEI++E P+   
Sbjct: 623 IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPEEKA 666


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 142/451 (31%), Gaps = 106/451 (23%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---------LIPL 180
            ++ RF    +D      +  +     Q    Y  RD      L +R         L  +
Sbjct: 219 QVVERFLGVLMDKRMQ-ASDWSSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEV 277

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--LTDGIIRSSRQT 238
            D E         +   G +ID     +L+  + +E +K  + +      D    +    
Sbjct: 278 MDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQ 337

Query: 239 YALRMYL-------------------------FLITGID----------LVDMSEGTLKS 263
             +   L                          L  G D          L D S+GTL  
Sbjct: 338 KQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLAR 397

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +     +  L          ++ +    ++ L E ++S  G++  +L   GA  +GR+S 
Sbjct: 398 LSQFPAVQALRDYR-----KAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFSC 451

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-----GKKLV 377
                Q +PR                                R+C + S        K +
Sbjct: 452 DSPNLQQIPR----------------------------ERRFRACFVPSKTVAGRPGKFI 483

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
           +AD + IE R+ A +A ++  I+A+  GED++  T +   N P   +SK  R + K +  
Sbjct: 484 IADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNF 543

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVK-STSTFEDWEQAESHHLWMQDQYPEF---- 492
            L Y   A  F+  AS          +        F  +      H   + + P      
Sbjct: 544 GLIYGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQKAEQPRETRTR 603

Query: 493 --------------AVKDKLIGTACELVKKA 509
                         ++   + GT+ ++ K++
Sbjct: 604 AGRRALFEYFAFTKSLNYPIQGTSADITKES 634



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
           +Q  S DI  E +          G  +V+ VHDEI++E P+   
Sbjct: 623 IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPEEKA 666


>gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
 gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
          Length = 302

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 63/282 (22%)

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R  S   +   +N L + + +DG++         + TGR S      QN+P        
Sbjct: 3   YRQISKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP-------- 52

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +       L   D + +E RVLA ++ E   
Sbjct: 53  ----------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNM 96

Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453
           ++AF  G DI+  T  K F    +D+V+   R   K +   + Y     G AK       
Sbjct: 97  LEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQ 156

Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492
                +  + +       +                            + +  ++      
Sbjct: 157 EAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERT 216

Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
           A+   + G+A +++K A             K + +LQ+  +L
Sbjct: 217 AINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 258


>gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus]
          Length = 530

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 124/365 (33%), Gaps = 48/365 (13%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +      +D   + K  E++    K+L+E+  ++       +     LR 
Sbjct: 155 ELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQIAGERFLLTSS-SQLRE 213

Query: 244 YLFLITGI----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-----LNT 294
            LF    +    + +  +E    +  S   +++L     L +L      + K     ++ 
Sbjct: 214 VLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLPKLMLEYRQVRKMKSTYVDG 273

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L   +   G +  T    G + TGR S      Q + +         Q I+         
Sbjct: 274 LRTCMRK-GFICPTWNQTG-TVTGRLSSKHPNIQGISK-HPVRITKKQYIKGKEEEILTI 330

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTT 412
            P        R+  ++  G   + AD + IE R+LA ++ E   +K F   E  DI+ + 
Sbjct: 331 SP--------RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQEPETTDIFTSL 382

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468
            ++    P ++V +  R   K +  ++ Y  G    A+         G  ++ F Q  K 
Sbjct: 383 ASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAECLGITPHEAGHFIESFMQKYKK 442

Query: 469 TSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVK 507
              F      +                     S    ++ Q    AV   + G+A +L K
Sbjct: 443 VHEFTKKTIGQCQNKGYVVSIMGRKRLLANINSQDYKLRTQAERQAVNFVVQGSAADLCK 502

Query: 508 KAWRA 512
            A   
Sbjct: 503 MAMVE 507


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/529 (17%), Positives = 166/529 (31%), Gaps = 100/529 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D+ET         G+  + ++  +   +   D   V L+           L +    
Sbjct: 150 LGLDLET--------TGLDPHQDRPRLLSLSTERDTYLVDLFALPHALEALRPLFEAKTG 201

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
              + V HN  F+     K  G+    +R  CT                 LA       +
Sbjct: 202 P--VLVGHNLKFDLAFLLKA-GLWPEGRRLWCT----------------GLAHQVIHARS 242

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR------- 176
           +M     L+       +D        +  +   QL   Y  RD +    L+ +       
Sbjct: 243 RMPALADLV-----PGLDKRLQTSDWSGPISEAQLA--YAARDTQVLLPLYHQQQEESRR 295

Query: 177 --LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
             +  + + E         +   G   + +  L   +      ++  + +   T+    S
Sbjct: 296 LGIGKVLEIESRALPAVAWMGLMGVPFNPERWLATAKEAELSAQEALKRLDWRTNW--DS 353

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
            +Q            GI+L D  E TL     H  +  L       +  S+  A      
Sbjct: 354 PKQVLE----ALRRAGIELSDTREETLSRHREHPTVAALLAYREHRKRQSTYGAAW---- 405

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L       GR+  + Q  GA  +GR S      Q +PR                      
Sbjct: 406 LENLHPLTGRIHPSWQQIGA-ESGRMSCSRPNLQQVPR---------------------- 442

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     R+C  A  G+ L+ AD + IE R+ A IAGE   ++AF  GED++  T  
Sbjct: 443 ------EPAYRACFQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTLTAR 496

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFE 473
                   + S+E R + K +   L Y  G++  +T A ++ GL+L          + F 
Sbjct: 497 LVTGKA--EPSREDRQLAKALNFGLLYGMGSEGLRTYARANYGLELSPQEAEALREAFFR 554

Query: 474 DWEQAESHHLW---------------MQDQYPEFAVKDKLIGTACELVK 507
            +    + H                          +   + G+  + +K
Sbjct: 555 AYPGLRAWHRHQPEGEVEVRTLAGRRRVTGRYTEKLNTPVQGSGADGLK 603



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 15/77 (19%)

Query: 593 YGGKLTENIVQAISRDILCEGMK-----NATKNGYDIVLTVHDEIVSETPDTPYFSV--- 644
           Y  KL    VQ    D L   +           G   VL VHDEIV E P     +    
Sbjct: 586 YTEKL-NTPVQGSGADGLKLTLALLYESRQKAPGCFPVLAVHDEIVIEAPADGVSAAYAW 644

Query: 645 ------GTLCSLMTKNP 655
                   + +++TK P
Sbjct: 645 LTRSMREGMEAILTKVP 661


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/472 (17%), Positives = 142/472 (30%), Gaps = 81/472 (17%)

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
            V  V  N  F+       + +     R   T + ++                 + H  K 
Sbjct: 967  VEVVGQNLGFDLPFL---MRLGFVPGRVRDTMLASQVLH---------AGNRTTGHSLKD 1014

Query: 126  EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS---- 181
               + L     KG   +         H+        Y  RD E    L++RL P      
Sbjct: 1015 LAHRHLGLELDKGLQTADWSGPLTDAHL-------GYAARDAELPLALWERLAPELAAAH 1067

Query: 182  -----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                 + E             G   D        + +A + +       +  D ++ ++ 
Sbjct: 1068 LTGTAEAEMAALPAVAWAARHGVGFDRP----AWDAVAADTEACAARAREHLDELLPNAG 1123

Query: 237  QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR--LASSGSAILKLNT 294
              + +  +  +         +   L S    +          L R   A+S  +      
Sbjct: 1124 NLFGVTNWNSVDEVTAAFAAAGVALTSTGDDALAAVAHPAAALLREHRAASKLSGTYGRG 1183

Query: 295  LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
                V+ DGR+    +  GA  +GR S      Q LPR                      
Sbjct: 1184 WLRHVADDGRVYAAWKQVGAGASGRMSCKDPNLQQLPRD--------------------- 1222

Query: 355  DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                      R C +   G+ LV AD + IE R+ A I G+   + A+  GED++ TT  
Sbjct: 1223 -------PRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGEDLHTTTAR 1275

Query: 415  KAFNTPIDKVSKEQRAIGKVMELALGYQGG-AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                     V+K  R + K +   L Y  G   +    AS+ G+ L +        + F 
Sbjct: 1276 AVLGKT--DVTKADRQLSKSLNFGLLYGMGAKALAAYAASNFGVALTEGEAADHRDAFFR 1333

Query: 474  DWEQAESHHLWMQD---QYPEFA-------------VKDKLIGTACELVKKA 509
             +    + H  + D   Q    A             +   + GT  + +K+A
Sbjct: 1334 TYPGLRAWHRKVPDGIIQTRTLAGRRRVGVGAFTEKLNTPVQGTGADGLKRA 1385


>gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda
           melanoleuca]
          Length = 1040

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 121/365 (33%), Gaps = 50/365 (13%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     ++D + + +   L+    K+L+++   +             LR 
Sbjct: 421 ELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAGEQF-LITSNNQLRE 479

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILK-----L 292
            LF    + L+     +    L+ +   S + +  L     L ++      + K     +
Sbjct: 480 VLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVHKTKSAFV 539

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           IQ       
Sbjct: 540 DGLLACMRK-GSISSTWNQTG-TVTGRLSARHPNIQGISKHP---------IQITKPQNF 588

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                 + +   RS  +A  G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 589 KGVEGAMLTISPRSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 648

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++    P + V+   R   K +  +  Y  G    A             L+ F Q  
Sbjct: 649 TLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAACLGVTVQEAAWFLESFLQKY 708

Query: 467 KSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+ H                        ++ Q    AV   + G+A +L
Sbjct: 709 KKVKDFVQTTIAQCHQTGYVASIMGRRRPLPRVRAQDQQLRAQAERQAVNFVVQGSAADL 768

Query: 506 VKKAW 510
            K A 
Sbjct: 769 CKMAM 773


>gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes
           HL025PA1]
          Length = 112

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET SP PL K GV+ YAE     + +  Y+ D  PV++ D      +P ++L
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLAR 101
             L D  V+  AHN+ FER+     L            +   +W CT V + 
Sbjct: 61  AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMVWSA 112


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 169/517 (32%), Gaps = 71/517 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET         G+  Y +     L  +        +           D+ + L  
Sbjct: 38  LGLDSET--------TGLDIYNDGFRCRLVQFGTP-SEAWVVPVERGGPYAGDVKRALE- 87

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNFSEH 121
                V HN+ ++  +F++TLG+ + +   +   T +LA     P          +  + 
Sbjct: 88  MVQGFVLHNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLID-PRGKDEGGSGHSLEDL 146

Query: 122 LTKM------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +       +  K L+A   K +  +      +         +  Y   D      L +
Sbjct: 147 TRRYIDSAVADNVKTLMADLAKANKTTKVNVWKKV--PFEDPHYQLYSGMDPILAARLIQ 204

Query: 176 RLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           +L PL        D E  L  +   +   G+ +D++   +L   +  +    +E  +   
Sbjct: 205 KLAPLVKVSDELVDNEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIALNYG 264

Query: 229 DGIIRSSRQTY-ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
              + S+ Q    L      I G       +     L  ++ H    + A  +I  + A 
Sbjct: 265 CEKVNSTDQVADVLESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEAKKAG 324

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  ++   +   S  R    +     +RT R S      Q LP             
Sbjct: 325 KWRKTW-VDGFLKQRDSQNRCHAAINPL-RARTARMSITGIPAQTLP------------- 369

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R C +A  G ++   D    E RVLA ++ +   I+AF +
Sbjct: 370 --------------AGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLD 415

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
             D+++ T   AF   I K   E R   KV+     Y GGAK     A   GLD+    +
Sbjct: 416 DADLHLMTARAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGAKTV---AEQTGLDMATAQK 471

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            V        +++A      +  +    A+++  I T
Sbjct: 472 VVAG------FDRAYPEVQKLSQRLQREAIRNGYITT 502


>gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
 gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
          Length = 1492

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 76/519 (14%), Positives = 175/519 (33%), Gaps = 83/519 (15%)

Query: 37   WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
            +D   V L D    + +  D+   + + + + +A+N   +  +  + L ++I    +   
Sbjct: 942  FDSYFVNLGDC---NTLQDDVANNIENSSAIKIAYNLKEQYKILTRHLQVEIKGTSY--- 995

Query: 97   SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY---DCTRANHV 153
                          +  + +   +     +   A+I+ +              CT  N +
Sbjct: 996  --------------DPKIGIWLLDQDAHEKTFHAIISNYLADEAALLDCVIGTCTDGNGI 1041

Query: 154  QAWQLFGEYCKRDVEATRELFKRLIPLSD---GERDLWLLDQTINDRGYR----IDLDLV 206
                      +R       L  +L  + +    ER+L+ L   I     R    ++LD +
Sbjct: 1042 GLHYNSQTSGRRRACIESVLVHKLHSVVEAMLKERELYKLYSEIEMPTIRTLCWLELDGI 1101

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEGTLKSIL 265
                +   Q+ ++L   +  + +   R + +++ L     +   +    +  +  L+ + 
Sbjct: 1102 GFCMDECQQQIERLQYRLHYIEEMAYRIAGRSFQLTSPTDIAHVLYTELNTCKDVLQKLS 1161

Query: 266  SHSNITQLAKD--LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                +  L  +   I + L  +   + + +      S   R+  T Q + A  TGR S  
Sbjct: 1162 QIHPLPALVLEWRRINSALTKTLYPLKRYSKYC-HKSKTYRVYPTCQMHTA--TGRISIS 1218

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                QN+P+    +  + + ++       + + +G  +D +           L+ AD + 
Sbjct: 1219 DPNLQNIPK----DFDIAKMVR-------MRNIIGCTNDTI-----------LLSADYSQ 1256

Query: 384  IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
            +E R++A ++ +    +   +G D++    ++    P D VS EQR   K M   + Y  
Sbjct: 1257 LELRLIAHLSEDKQLSRVLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAKQMCYGIIYGM 1316

Query: 444  GAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDW---------------------EQA 478
                               +  F       + F +                         
Sbjct: 1317 TPMALGEQMKVPEEQAATFMHTFKSRYNGIAKFIEKTLVSCRREGYVSTIMNRKRLLPNI 1376

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
             S +  ++      A+   + G+A +LVK A    H+ +
Sbjct: 1377 RSTNARLRSHAERQAINTTVQGSAADLVKIAMINIHKRI 1415


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 169/517 (32%), Gaps = 71/517 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET         G+  Y +     L  +        +           D+ + L  
Sbjct: 38  LGLDSET--------TGLDIYNDGFRCRLVQFGTP-SEAWVVPVERGGPYAGDVKRALE- 87

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNFSEH 121
                V HN+ ++  +F++TLG+ + +   +   T +LA     P          +  + 
Sbjct: 88  MVQGFVLHNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLID-PRGKDEGGSGHSLEDL 146

Query: 122 LTKM------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +       +  K L+A   K +  +      +         +  Y   D      L +
Sbjct: 147 TRRYIDSAVADNVKTLMADLAKANKTTKVNVWKKV--PFEDPHYQLYSGMDPILAARLIQ 204

Query: 176 RLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           +L PL        + E  L  +   +   G+ +D++   +L   +  +    +E  +   
Sbjct: 205 KLAPLVKVSDELVENEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIALNYG 264

Query: 229 DGIIRSSRQTY-ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
              + S+ Q    L      I G       +     L  ++ H    + A  +I  + A 
Sbjct: 265 CEKVNSTDQVADVLESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEAKKAG 324

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  ++   +   S  R    +     +RT R S      Q LP             
Sbjct: 325 KWRKTW-VDGFLKQRDSQNRCHAAINPL-RARTARMSITGIPAQTLP------------- 369

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R C +A  G ++   D    E RVLA ++ +   I+AF +
Sbjct: 370 --------------AGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLD 415

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
             D+++ T   AF   I K   E R   KV+     Y GGAK     A   GLD+    +
Sbjct: 416 DADLHLMTARAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGAKTV---AEQTGLDMATAQK 471

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            V        +++A      +  +    A+++  I T
Sbjct: 472 VVAG------FDRAYPEVQKLSQRLQREAIRNGYITT 502


>gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes
           HL030PA1]
          Length = 112

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 11/112 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET SP PL K GV+ YAE     + +  Y+ D  PV++ D      +P ++L
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLAR 101
             L D  V   AHN+ FER+     L            +   +W CT V + 
Sbjct: 61  AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMVWSA 112


>gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 651

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 74/471 (15%), Positives = 144/471 (30%), Gaps = 68/471 (14%)

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLV 206
            ++   +  +   +   ++VE   + +  +    + E  +  +   +N    ++ID  L+
Sbjct: 210 NKSTTEERLKQTRKLALKEVEIMNK-YNMIKVFQEQEMIIEGVLIEMNYCNEFKIDDKLL 268

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            + ++++ +E+ K++ +  K+    I  S      +  +    GID V     T K ILS
Sbjct: 269 NEQRKVLIEEQNKIEIETKKIIGKTINLSSPEQVKKELIRYNIGIDGVKKKATTDKKILS 328

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR----------LRGTLQFYGASR 316
            S            +L      I KL  LS  +    R          +R       A  
Sbjct: 329 QSG-------HPFAKLVLEYRKISKL--LSGVIEQIRRCCIKTGDEYFIRTKWS-QTAIT 378

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR        Q +P+            QA +  + +  P        R   I  N    
Sbjct: 379 TGRIQSKNPNLQQIPK------------QAFSLQQFVVIP--------RDLFITHNNNTF 418

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V  D   IE R+LA    +   I+ F +  DI+    A      ++ ++  +R   K + 
Sbjct: 419 VAIDYNQIELRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIV 478

Query: 437 LALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD----- 487
               Y  G    A             L+ F     S   +++     +            
Sbjct: 479 YGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIITNASTTGFVHTINNR 538

Query: 488 -----------------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                            +    AV   + GTA +++K       + +   W  +      
Sbjct: 539 RRRINNLTDSSDKKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNI 598

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
             +    +    +  V   +    +  V + +P    +      G     N
Sbjct: 599 HDEIVLEVPDHLLDEVCVTLKYLMEHIVQLEVPLVVTVETGKKWGSLHPYN 649



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
             + +Q  + DI+   M    K       G  ++L +HDEIV E PD     +  +C
Sbjct: 562 VNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHL---LDEVC 615


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 4/137 (2%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F
Sbjct: 1   NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 60

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
             P+D V+ EQR   K +   L Y   A    +            +  + +       + 
Sbjct: 61  GLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYM 120

Query: 474 DWEQAESHHLWMQDQYP 490
           +  +A++      +   
Sbjct: 121 ERTRAQAKEQGYVETLE 137


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 90/585 (15%), Positives = 180/585 (30%), Gaps = 130/585 (22%)

Query: 6   IDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQS------ 51
           ID+ET    P      + K  + AY  ++Q  I     +             +       
Sbjct: 211 IDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMKGN 270

Query: 52  ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---------- 98
               +   L + L  E +  +AHN  F+    + +L I +    W  T +          
Sbjct: 271 QIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLIHIIDYRGER 329

Query: 99  --LARTNG-LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
              ++    L + +     AL+  +   + E    LI                       
Sbjct: 330 YSWSKRLAWLETDMGGYDDALDGEKPKGEDEGNYDLI----------------------P 367

Query: 156 WQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQ----------TINDRGYRIDLD 204
           W +   Y   D + T  L ++ IPL  + E   WL +            I   G  +D +
Sbjct: 368 WDILKVYLADDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDRE 427

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDG------------------IIRSSR---------- 236
            +  L+    +E  +L++ + +  +G                   I+S+           
Sbjct: 428 WLEVLRVSYEKEISRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFK 487

Query: 237 -----------------QTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
                             T  L   LF   G++        +  T    L          
Sbjct: 488 KYKKYDPSKGGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFV 547

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +++    ++      ++ LS  +  D  +  +   +G + TGR S      Q  PR+  
Sbjct: 548 KVLMEFRKANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVN 606

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           +  +     +      +                   +G  +V  D + +E R+L      
Sbjct: 607 TPTLFQYNFEIKKMFNSRF----------------GDGGVIVQFDYSQLELRILVCYYSR 650

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            + I  + +G D++    + AF   I++VSK+QR   K ++  + YQ  A+         
Sbjct: 651 PYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAE 710

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           G+ + +    +     F+ + +        +    + +    L G
Sbjct: 711 GITMSEDECEIFIKKYFKRFPKVSKWIRDTKKHVKDISTVKTLTG 755


>gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
 gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
          Length = 595

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 131/391 (33%), Gaps = 48/391 (12%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E    +    +   G   + +      +++    + L+E   KL          T A+
Sbjct: 126 NVEMPSLVALARLELNGAGFNPEECETQCQVMKDRLRMLEERAHKLAGHTFAL-NSTKAV 184

Query: 242 RMYLFLITGIDLVD--------------MSEGTLKSILSHSNITQLAKDLILNR----LA 283
              L+    +++ +                +G L+ + +   +  L   ++  +    L 
Sbjct: 185 DKVLYEEKKLEINEDPSTNSQPQERLSTSRKGVLEKLKTSHPLHPLPGVILKWKHISNLL 244

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +  + + K N  +  ++ D R+  T   + A  TGR +      Q +P++   E      
Sbjct: 245 NKVTPLQKKNVYNPRLNMD-RIYSTCNLHTA--TGRVAFHDPNLQFIPKEFEIEMPTDTN 301

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
            +         + +     C+R   I   G  ++ AD + +E R++A ++ +    +A  
Sbjct: 302 NED-GPPAAGEETMSKRKVCMRHAFIPFKGGVILAADYSQLEVRIMAHLSKDSKLTQALN 360

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------- 452
           +G+D++    ++     ++ VS + R   K +   + Y  G K                 
Sbjct: 361 SGQDVFKAIASQWKGVAVEHVSDKLRQQAKQLYYGIIYGMGPKTLGEKLGVSKEEGKRRI 420

Query: 453 ---SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL-----------WMQDQYPEFAVKDKL 498
                    +Q++ Q          + Q  +              +   Q    A    +
Sbjct: 421 ETFKSSYTGIQRYRQTTVDQCKRNGYVQTMAERRRYLPDINGEDYYKLSQAERQAFNTTI 480

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
            G+A +LVKKA     Q + Q + D      
Sbjct: 481 QGSAADLVKKAMVLIDQRLQQEFPDTRRSHR 511


>gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator]
          Length = 1937

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 137/420 (32%), Gaps = 70/420 (16%)

Query: 175  KRLIPLS-----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            + L P+      D E  +  +   +   G  ++L  + +   +I  E + L+     L  
Sbjct: 1504 EELNPVLLHTFRDIEMRIATILACMELSGIGVNLKALQETLSVILSEMQSLETRAYDLAG 1563

Query: 230  --GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                + SS++          + G+   D    T K++L   +       +   +L ++ +
Sbjct: 1564 RKFNLSSSKEVGQ-------VLGL-YKDKKVSTSKAVLEKCDNPISRLVISWRKLNATKT 1615

Query: 288  AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
             I+    L      D R+ G       + TGR S      QN+P+               
Sbjct: 1616 KIVY--PLLNLSQEDSRIHG--NCITCTVTGRVSMHEPNLQNVPKD-------------- 1657

Query: 348  NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            VR   + + G  ++ AD   +E R+L   + +    +      D
Sbjct: 1658 -----FHFEDNNLLVSVRRSFVPALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGD 1712

Query: 408  IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK----TMASHCGLDLQQFS 463
            I+ +  AK  N   ++V+ E R   K +   + Y  G K          +     L+ F 
Sbjct: 1713 IFKSIAAKWNNVIEEEVTNEMRQRTKQLCYGMIYGMGVKSLAENLCISETEAQHFLESFM 1772

Query: 464  QNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTA 502
                    + D    ++HH                        + Q    AV  K+ G+A
Sbjct: 1773 NAYPGIYKWLDDTLEKAHHNGYVTTLLGRRRQLPDLRSTKSSTRAQAERQAVNTKVQGSA 1832

Query: 503  CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             ++VKKA     + +   + D       V+    +   R++    R  M +    + + L
Sbjct: 1833 ADIVKKAMIIIEEKMRHSFPD------SVIVFPETQGTRKLRRNSR-DMLQRGGYLVLQL 1885


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P
Sbjct: 2   GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 61

Query: 421 IDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +D V+ EQR   K +   L Y   A    +            +  + +       + +  
Sbjct: 62  LDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERT 121

Query: 477 QAESHHLWMQDQYP 490
           +A++      +   
Sbjct: 122 RAQAKEQGYVETLE 135


>gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes]
 gi|114592894|ref|XP_001147379.1| PREDICTED: polymerase (DNA directed) nu isoform 3 [Pan troglodytes]
          Length = 900

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 148/447 (33%), Gaps = 58/447 (12%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 428 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLIM-SNNQLRE 486

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L+     S + +  L     L ++      + K+     
Sbjct: 487 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFV 546

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I      + 
Sbjct: 547 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPI-------QITTPKNFKG 597

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
             D +   S   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 598 KEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 655

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + P+++V+   R   K +  A+ Y  G    A             L+ F Q  
Sbjct: 656 TLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKY 715

Query: 467 KSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+                     +H   ++ Q    AV   + G+A +L
Sbjct: 716 KKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADL 775

Query: 506 VKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR-VANVPRLVMRRHKRD 557
            K A         A H    +L   + +     V++         V      + +    +
Sbjct: 776 CKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALE 835

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTAT 584
           + + +P    L      G    L  A 
Sbjct: 836 LQLQVPLKVSLSAGRSWGHLVPLQEAW 862


>gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia
           guttata]
          Length = 631

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 134/428 (31%), Gaps = 54/428 (12%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF-----KRLIPL-SDGERD 186
             F K          T      ++Q  G   ++      +L      + L  L    E  
Sbjct: 192 KYFEKPFSKGAENTDTDTLRNISYQNLGVNLEKLYNVMMDLAHGLKAQGLWNLFCTLELP 251

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +      +D   + K  E++    K+L+ +  ++       +     LR  LF
Sbjct: 252 LIKILAVMETHKIYVDKQELKKTSEILGLRLKELEREAHEVAGERFLLTSS-CQLREVLF 310

Query: 247 LITGIDL--VDMSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILK-----LNTLSE 297
               +      +    ++ +   S   + +L     L ++      + K     ++ L  
Sbjct: 311 DKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDLHPLPKIILEYRQVHKMKSTYVDGLRT 370

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +   G +  T    G + TGR S      Q + +           +    +        
Sbjct: 371 CM-KKGFISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------VTIAKKQYIKGKEE 419

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAK 415
            + +   R+  ++  G   + AD + IE R+LA ++ E   +K F   E  DI+ T  ++
Sbjct: 420 DIITISPRTLFVSKKGCTFLAADFSHIELRILADLSSEPELLKLFQEPEITDIFATLASQ 479

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471
               P ++V    R   K +  ++ Y  G    A             ++ F Q  K    
Sbjct: 480 WKGIPSEQVKHADREQAKRIVYSVVYGAGKERLADCLGITPVQASQFIESFMQKYKKVHE 539

Query: 472 FEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F      +                     +    ++ Q    AV   + G+A +L K A 
Sbjct: 540 FTKKTIEQCRNKGYVVSIMGRKRPLANINAQDYKLRTQAERQAVNFVVQGSAADLCKMAM 599

Query: 511 RAKHQGVL 518
                 ++
Sbjct: 600 VKIFASIV 607


>gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
 gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
          Length = 2215

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 124/438 (28%), Gaps = 83/438 (18%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E    +    +   G            +++  + + L+E   +L             +
Sbjct: 1717 DVEMPSLVTLARMELNGAGFSPVECETQCQIMQAKLRMLEEQAYQLAGHTFAL-TSPDDI 1775

Query: 242  RMYLFLITGIDL--------------------VDMSEGTLKSI-LSHSNITQLAKDLILN 280
               LFL   +                             LK +  S   + +L K   L 
Sbjct: 1776 AQVLFLELKLPANGDPSSTTNPQPRKTLGTARPARGRKPLKHLSTSKDVLEKLKKFHALP 1835

Query: 281  RLASSGSAILKLNTLSEAVSS------------DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             +      I   N+L++ V                R+ G    + A  TGR +      Q
Sbjct: 1836 GVILEWRRIS--NSLTKVVFPLQKEKVYNPRLNMDRIYGNCDLHTA--TGRVTFHDPNLQ 1891

Query: 329  NLPR--------------------QERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            N+P+                         +      +   R           S  +R   
Sbjct: 1892 NIPKDFEIEMPTIIGDSPPPGCGETVSKRKGRKVVRRTDGRRVESDGAGQAFSVSLRHAF 1951

Query: 369  IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
            I   G  L+ AD + +E R++A ++ +    +   +G+D++    ++     ++ VS + 
Sbjct: 1952 IPFQGGVLLAADYSQLELRIIAHLSQDSKLTQVLNSGQDVFKAIASQWKGVAMEDVSDKL 2011

Query: 429  RAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDW--------- 475
            R   K +   + Y  GAK                ++ F         +            
Sbjct: 2012 RQQAKQLCYGMIYGIGAKALGEQLGVDEEEGACFIETFKSKYTGMRRYLHTTVDQCKKDG 2071

Query: 476  ------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                              +  ++      AV   + G+A +LVKKA  +  Q + +L+  
Sbjct: 2072 FVQTMAGRRRYLPGITEGNHHVRCHAERQAVNTTVQGSAADLVKKAMVSIDQKLQKLFPA 2131

Query: 524  LTEGFACVVQEGGSISAR 541
                     Q+    S +
Sbjct: 2132 TRRSHRQDTQKRSRRSQQ 2149


>gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1359

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 84/597 (14%), Positives = 189/597 (31%), Gaps = 62/597 (10%)

Query: 58   LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            ++ L D+ +  V+ N+  E I     L   +   R I   + A  +   +          
Sbjct: 771  VRLLEDDNIKKVSFNAK-ESIKPMLWLNQWMQPSRLIDPKIAAWVHNTEAEEMKGFELTF 829

Query: 118  FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA--NHVQAWQLFGEYCKRDVEATRELFK 175
               HL + ++ +  I       + S   +      N+   + +F    +        L +
Sbjct: 830  LYHHLVENKDYEKQINLPMIKELQSLDSNKDLVIINNDNNFSMFPNDLRNSSLVMIALEQ 889

Query: 176  RLIPLSD-----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED-IVKLTD 229
             L+ L+       E  +  +   +   G     +        +    + L      +   
Sbjct: 890  LLLQLNLQAPFYQEMRVVPILSKMELHGITFSPETFRTCSSNLQTYVQNLQGKWNTEFKK 949

Query: 230  GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +S      ++ +L     I + +  + TL  ++      Q  KD++  R   +    
Sbjct: 950  DSAKSLSSPVQIKEFLLTQYKITVSNTGKQTLVDLIKKYPDVQYIKDILEYR-HCNKILT 1008

Query: 290  LKLNTLSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS----EEILTQT 343
              +    + V  +    +       G + TGR S      QNLPR   +    +E     
Sbjct: 1009 TYVQPYLDIVKDEQAPSIHCQWIHTG-TATGRLSCKQPNLQNLPRNALNVNYNDEDGDSE 1067

Query: 344  IQALNRGETIADPLGLASDCV----RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            +   N  E   D +G  +  +    R    A  G  L+  D + IE R++   + +    
Sbjct: 1068 LADFNIDEDEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRIMTHYSKDQKLE 1127

Query: 400  KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            + F N  D++          P+DKV+  +R   K +   + Y  G     +++    +  
Sbjct: 1128 EYFKNEVDVFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIG---PHSLSQILKVSK 1184

Query: 460  QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFA---------------------- 493
            ++ SQ +        +  ++ + E   + ++      A                      
Sbjct: 1185 ERASQFINDFLNKFQSIRNYIEEEKKKIRLKKFIKTIAGRRRLLPHVNSQDPNQSHRALR 1244

Query: 494  --VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS-----ISARRVANV 546
              V   + G+A +++K+A       +      L++ +  +           I    +  +
Sbjct: 1245 QTVNSIIQGSASDIIKEAM----FNIHVYLSQLSKEYKSLDPHNDPRLLLQIHDELIYEI 1300

Query: 547  PRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
            P  ++   + +V I +      VY  D+    +   +         ++    +  I 
Sbjct: 1301 PDAMLNDKESEVCINIKRIMESVYQDDLTVPIAVTMSKGKSWGTLTSFTPTTSNPIT 1357


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 90/585 (15%), Positives = 179/585 (30%), Gaps = 130/585 (22%)

Query: 6   IDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQS------ 51
           ID+ET    P      + K  + AY  ++Q  I     +             +       
Sbjct: 211 IDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMKGN 270

Query: 52  ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---------- 98
               +   L + L  E +  +AHN  F+    + +L I +    W  T +          
Sbjct: 271 QIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLIHIIDYRGER 329

Query: 99  --LARTNG-LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
              ++    L + +     AL+  +   + E    LI                       
Sbjct: 330 YSWSKRLAWLETDMGGYDDALDGEKPKGEDEGNYDLI----------------------P 367

Query: 156 WQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQ----------TINDRGYRIDLD 204
           W +   Y   D + T  L ++ IPL  + E   WL +            I   G  +D +
Sbjct: 368 WDILKVYLADDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDRE 427

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDG------------------IIRSSR---------- 236
            +  L+    +E  +L++ + +  +G                   I+S+           
Sbjct: 428 WLEVLRVSYEKEISRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFK 487

Query: 237 -----------------QTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
                             T  L   LF   G++        +  T    L          
Sbjct: 488 KYKKYDPSKGGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFV 547

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +++     +      ++ LS  +  D  +  +   +G + TGR S      Q  PR+  
Sbjct: 548 KVLMEFRNGNHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVN 606

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           +  +     +      +                   +G  +V  D + +E R+L      
Sbjct: 607 TPTLFQYNFEIKKMFNSRF----------------GDGGVIVQFDYSQLELRILVCYYSR 650

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            + I  + +G D++    + AF   I++VSK+QR   K ++  + YQ  A+         
Sbjct: 651 PYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAE 710

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           G+ + +    +     F+ + +        +    + +    L G
Sbjct: 711 GITMSEDECEIFIKKYFKRFPKVSKWIRDTKKHVKDISTVKTLTG 755


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 75/242 (30%), Gaps = 59/242 (24%)

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R C I     K   
Sbjct: 1   RLSSSDPNLQNIP------------------------VRDDDGKEIRKCFIPEPSCKFFS 36

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ ++  ++AF  G DI+  T +K +   +D+V+  QR   K     
Sbjct: 37  ADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDEVTDSQRKQAKQANFG 96

Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------- 475
           + Y     G A+            +  +         + +                    
Sbjct: 97  IIYGITTYGLAQRMGIDNGEARQLIDDYFTTFPKVKEYMEKAKEIARERGYAETLFGRRR 156

Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKD 523
                 S +  ++      A+   + G+  +++K A             + + +LQ+  +
Sbjct: 157 YLPDINSKNGTVRGFAERNAINAPIQGSEADIIKLAMIRIWKRFKKEGIRSRMILQVHDE 216

Query: 524 LT 525
           L 
Sbjct: 217 LN 218


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 108/669 (16%), Positives = 201/669 (30%), Gaps = 164/669 (24%)

Query: 5    FIDIETRSPQPLPKV---GVWAYAEQAVITLCAYAWDDEP------------VKLWDRTE 49
              D ET     L KV   G           +  ++    P            V + D   
Sbjct: 627  ACDTETI-AIDLKKVSPIGHGR--------MICFSIYCGPDVKFFDGNTRLWVDVMDDIN 677

Query: 50   QSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRW-ICTSVL--ARTNGL 105
              A+  +  +Y  DE+++ V HN  F+R +F    + +            +   AR N  
Sbjct: 678  GEAVLQEFKEYFEDESILKVWHNYAFDRHIFYNHNINVKGFGGDTLHMARLWNAARQNSG 737

Query: 106  PSSLKNAC-LALNFSEHLTKMEEGKALIA---RFCKGSIDSPPYDCTRANH-VQAWQLFG 160
              SL+  C   LN ++   K   G+  I       K     P     R    +  W    
Sbjct: 738  GYSLEALCRELLNKTKTPIKDLFGQKKIKANGEAGKAITIPPLQRIQRDRRSILDW---I 794

Query: 161  EYCKRDVEATRELFKRL-IPLSDGER----DLW-----------LLDQTINDRGYRIDLD 204
            EY   D E T  L + L + L D        +W            L   +  RG +ID+D
Sbjct: 795  EYSSLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDID 854

Query: 205  LVLKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
             +  L+    ++ ++                   +      ++  LF          ++ 
Sbjct: 855  YLKNLESTAFKDMEENRNRFISWASKHSEGAKYMNPDSDAQIQQLLFAPV---TNKKTKE 911

Query: 260  TLKSI--LSHSNITQLAKD----------LILNRLASSGSAIL----------KLNTLSE 297
             +         N+  + ++           IL+ L    +++            L  L+ 
Sbjct: 912  EMPKSKDFETENVEGIIEEGRTKPKKNMSFILDGLGFPSNSVTTSGWPSVDASALRELAG 971

Query: 298  AVSSDGRLRGTLQFYGASRTGRWS---------------------GCVFQPQNLPRQERS 336
                +G+     QF+      +                       G +     +P Q+ +
Sbjct: 972  KSPENGKFGTAYQFFVDKSENKEEGEALGKEACLAIASLLELGTIGTLLNTFIIPLQKLA 1031

Query: 337  EE---------ILTQTIQALNRGETIADPLGLASDC--VRSCIIASNGKKLVVADLAGIE 385
            ++         + T+T +  +R   + +   L  D   +R       G  L+VAD   +E
Sbjct: 1032 DKNSRLHTSVNVNTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLE 1091

Query: 386  ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE------------------ 427
             R+LA I      I AF  G D +  T    +    + V K                   
Sbjct: 1092 LRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPPKPLLK 1151

Query: 428  -----QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
                 +R   K +  ++ Y     G +  +          L ++ ++      ++    A
Sbjct: 1152 NIFASERRKAKTLNFSIAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIA 1211

Query: 479  ESH-HLW--------------------MQDQYPEFAVKDKLIGTACELVKKAW--RAKHQ 515
             +H H W                    M++     ++   L G A ++V KA      ++
Sbjct: 1212 TAHSHKWTRTLMGRYRHLPDIDNSAKGMKNHAERASINTPLQGGAADIVMKAMLIIEDNK 1271

Query: 516  GVLQLWKDL 524
             + +L   L
Sbjct: 1272 RIKELGYKL 1280



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 116/369 (31%), Gaps = 91/369 (24%)

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L +    + RL  ++     + TGR S      QN P  E+                  
Sbjct: 1026 PLQKLADKNSRLHTSVNVN--TETGRLSSRKPNLQNQPALEKDRY--------------- 1068

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R       G  L+VAD   +E R+LA I      I AF  G D +  T 
Sbjct: 1069 ---------KIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMISAFKVGGDFHSRTA 1119

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
               +    + V K         E+ L + G  +  K +  +     ++ ++ +  +  + 
Sbjct: 1120 MGMYPHVKEAVDKG--------EVLLEWDGDGEPPKPLLKNIFASERRKAKTLNFSIAYG 1171

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                  S    +                    +K+A     Q  L  W +       +V 
Sbjct: 1172 KTAHGLSTDWGVT-------------------LKEA-----QETLNRWYEDRPEV--LVW 1205

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
            +  +I+        R +M R++                    D S            + +
Sbjct: 1206 QRKTIATAHSHKWTRTLMGRYR---------------HLPDIDNSAKG--------MKNH 1242

Query: 594  GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
              + + N  +Q  + DI+ + M     N      GY +++ +HDE++ E P+        
Sbjct: 1243 AERASINTPLQGGAADIVMKAMLIIEDNKRIKELGYKLIMQIHDELILEGPEENADEARG 1302

Query: 647  LC-SLMTKN 654
            L  +LM+  
Sbjct: 1303 LVMNLMSNP 1311


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 95/584 (16%), Positives = 188/584 (32%), Gaps = 99/584 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAMPSDLLQ 59
           L +D ET         G+  Y++     L  +   DE    PV+L D         D+  
Sbjct: 38  LAVDTET--------TGLDIYSDTFECRLVQFGTQDEAWVVPVELGDV-----FIEDVRI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALN 117
            +     + V  N+ ++  +  +  GI++     R + T +LA+    P   +      +
Sbjct: 85  AIGALRKV-VLQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVD-PRPFEAGGFGHS 142

Query: 118 FSEHLTKM---EEGKALIARFCKGSIDSPPYDCTRANHVQAWQ-LFGEYCKRDVEATREL 173
             E + +    E+ + +     K + +           +  +   + +Y   D   T  +
Sbjct: 143 LEELIAEFISKEQAETVKKLMAKLAQEHKTTKAKIWATIDLFHPEYLKYAGMDTIFTARV 202

Query: 174 FKRLIPL-SDGERDLWLLDQTIND-------RGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            K L PL  D  R L   +  I++       +G+ +D++   +L         +   + +
Sbjct: 203 CKALTPLVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQELS--DKWLADQQVWEAI 260

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
             T+  +     T  L   L    G+ +   +E   +               +L +L + 
Sbjct: 261 AFTEYGVEKVNSTEDLAEGL-EEMGVKITGRTETGKRQ----------VDKTLLEKLVAE 309

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQTI 344
           G+ +  +                     A + G+W     Q     R            +
Sbjct: 310 GNELATIA------------------QEAKKLGKWRKTWVQKFLDTRDAEDRCHTFVNPL 351

Query: 345 QALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           QA     +I    A  L  +   VR C +A  G  +   D    E RVLA ++ +   I+
Sbjct: 352 QARTSRMSITGIPAQTLPASDSTVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTMIE 411

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCG 456
           AF  G D++  T          +V+   R +GK+      Y GGAK     A        
Sbjct: 412 AFKTGADLHQMTA------DAAQVT---RKVGKMANFLTVYGGGAKTLAEQAKVDFPTAK 462

Query: 457 LDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFAVKDKLIGTACEL 505
             L  F++     +        E+             L +       A+   +  ++ ++
Sbjct: 463 RTLDAFARTYPGVARLSKKLGTEAGRKGYIVTPVGRRLPVDSSRSYSALNYMVQSSSRDV 522

Query: 506 VKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRV 543
             +A    H+        L +  ++         E  +    ++
Sbjct: 523 TCRALIRLHKAGYTPYLRLPIHDEIVASLPASEAERAAAHIGQL 566



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 14/179 (7%)

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
           A S+   M + +   A   ++   A ++ +K  +  +   +      T      V     
Sbjct: 402 ALSNDQTMIEAFKTGADLHQMTADAAQVTRKVGKMANFLTVYGGGAKTLAEQAKVD--FP 459

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
            + R +    R      +    +   + R+       G    ++++       R+Y    
Sbjct: 460 TAKRTLDAFARTYPGVARLSKKLGTEAGRKGYIVTPVGRRLPVDSS-------RSYSA-- 510

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETPDTPYFS-VGTLCSLMTK 653
              +VQ+ SRD+ C  +    K GY   L   +HDEIV+  P +        +  LM +
Sbjct: 511 LNYMVQSSSRDVTCRALIRLHKAGYTPYLRLPIHDEIVASLPASEAERAAAHIGQLMAE 569


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 39/241 (16%)

Query: 248 ITGIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASSG-SAILKLNTLSEAVSSDGRL 305
             G       E  L  +L  H  I ++     L +L S+    +LKL         + R+
Sbjct: 2   KKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKL----ALKDKNSRI 57

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +    G + TGR S      QN+P                          G  +   +
Sbjct: 58  YSSFLQTG-TATGRLSSKDPNLQNIPAH------------------------GQYAKDYK 92

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + +
Sbjct: 93  SCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESN 148

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            E R++ K +   L Y  G    ++  K  A+     ++++ +N  S   + +  + E+ 
Sbjct: 149 YETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAK 208

Query: 482 H 482
            
Sbjct: 209 Q 209


>gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii]
          Length = 1585

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 145/442 (32%), Gaps = 56/442 (12%)

Query: 184  ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
            E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 1113 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGEPF-LITSNNQLRE 1171

Query: 244  YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKLNTL-- 295
             LF    + L+     +    L+     S + +  L     L ++      + K+ +   
Sbjct: 1172 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDFHPLPKIILEYRQVHKIKSTFV 1231

Query: 296  --SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
                A +  G +  T    G + TGR S      Q + +           I      +  
Sbjct: 1232 DGLLACTKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPI-------QITTPKNFKGK 1283

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVT 411
             D     S   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ T
Sbjct: 1284 EDKTLTISP--RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQEAERDDVFST 1341

Query: 412  TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVK 467
              ++  + P+++V+   R   K +  A+ Y  G    A             L+ F Q  K
Sbjct: 1342 LTSQWKDVPMEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKYK 1401

Query: 468  STSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELV 506
                F     A+                     +H   ++ Q    AV   + G+A +L 
Sbjct: 1402 KIKDFARAAIAQCHQTGYVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLC 1461

Query: 507  KKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR-VANVPRLVMRRHKRDV 558
            K A         A      +L   + +     V++         V      + +    ++
Sbjct: 1462 KLAMIHVFTAVAASRTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALEL 1521

Query: 559  HIVLPSSRRLVYSDVKGDCSYL 580
             + +P    L      G    L
Sbjct: 1522 QLQVPLKVSLSAGRSWGHLVPL 1543


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 100/584 (17%), Positives = 193/584 (33%), Gaps = 99/584 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAMPSDLLQ 59
           L +D ET         G+  Y++     L  +   DE    PV+L D         D+  
Sbjct: 38  LAVDTET--------TGLDIYSDTFECRLVQFGTQDEAWVVPVELGDV-----FIEDVRI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALN 117
            +     M V  N+ F+  +  +  GI++     R + T +LA+    P   +      +
Sbjct: 85  AIGALKRM-VLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVD-PRPFEAGGFGHS 142

Query: 118 FSEHLTKM---EEGKALIARFCKGSIDSPPYDCTRANHVQAWQ-LFGEYCKRDVEATREL 173
             E + K    ++ + +     K + +         + +  +   +  Y   D   T  +
Sbjct: 143 LEELIAKFISEDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPEYLLYAGMDTIFTARV 202

Query: 174 FKRLIPL-SDGERDLWLLDQTIND-------RGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            K L PL  D  R L   +  I++       +G+ +D++    L E    +++    + +
Sbjct: 203 CKSLTPLVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQE--VWEAI 260

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
             T+  +     T  L   L    G+ +   +E   + + +           +L++L   
Sbjct: 261 AFTEYGVEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVNAA----------LLDKLVED 309

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQTI 344
           G+ +  +                     A + G+W     Q     R            +
Sbjct: 310 GNELAAIA------------------QEAKKLGKWRKTWVQKFIDTRDSEDRCHTFINPL 351

Query: 345 QALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           QA     +I    A  L  +   VR C IA  G  +   D    E RVLA ++G+   I+
Sbjct: 352 QARTSRMSITGIPAQTLPSSDWIVRRCFIAEPGDVMASVDYQAQELRVLAALSGDRNMIE 411

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-------- 452
           AF NG D++  T          +V    R +GK       Y GGAK              
Sbjct: 412 AFENGADLHQMTA------DAAQVP---RKVGKTANFQKVYGGGAKALAEAVGISIPVAK 462

Query: 453 ------SHCGLDLQQFSQNVKSTSTFEDWEQ-AESHHLWMQDQYPEFAVKDKLIGTACEL 505
                 S     +++ S+ +   +    +   A    L +       A+   +  ++ ++
Sbjct: 463 RVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGRRLPVDSSRTYSALNYMIQSSSRDV 522

Query: 506 VKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRV 543
             +A    H+        L +  ++         E  +     +
Sbjct: 523 TCRALIRLHEAGYTPYLRLPIHDEIVASLPASEAERAAAHIGHL 566



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 14/177 (7%)

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
           A S    M + +   A   ++   A ++ +K  +  +    +++    +  A  V     
Sbjct: 402 ALSGDRNMIEAFENGADLHQMTADAAQVPRKVGKTANFQ--KVYGGGAKALAEAVGISIP 459

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
           ++ R             +    + + + R     +  G    ++++       RTY    
Sbjct: 460 VAKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGRRLPVDSS-------RTYSA-- 510

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETPDTPYFS-VGTLCSLM 651
              ++Q+ SRD+ C  +    + GY   L   +HDEIV+  P +        +  LM
Sbjct: 511 LNYMIQSSSRDVTCRALIRLHEAGYTPYLRLPIHDEIVASLPASEAERAAAHIGHLM 567


>gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta]
          Length = 1484

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 149/463 (32%), Gaps = 73/463 (15%)

Query: 184  ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
            E  L  +   +     +++ + + K+  L+    KKL+++   +             LR 
Sbjct: 1030 EVPLIPILAVMESHAIQVNKEEMEKISALLGARLKKLEQEAHFVAGERFLIMSSN-QLRE 1088

Query: 244  YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKL----- 292
             LF    + L+     +    L+     S + +  L     L ++      + K+     
Sbjct: 1089 ILFGKLKLHLLSRRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFV 1148

Query: 293  NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            + L   +   G +  T    G + TGR S      Q + +           IQ       
Sbjct: 1149 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IQITKPKNF 1197

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                  + +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 1198 KGKEDEILTISPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 1257

Query: 411  TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
            T  ++  + P++ V+   R   K +  A+ Y  G    A             L+ F Q  
Sbjct: 1258 TLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKY 1317

Query: 467  KSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACEL 505
            K    F     A+                     +H   ++ Q    AV   + G+A +L
Sbjct: 1318 KKIKDFARAAIAQCHRTGYVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADL 1377

Query: 506  VKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
             K A                + V Q+  +L            +   RR       + +  
Sbjct: 1378 CKLAMIRVFTAVATSRTLTARLVAQIHDELLFEVEDPQIPECAALVRRTME---SLEQVQ 1434

Query: 555  KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
              ++ + +P    L      G    L         +  +G  L
Sbjct: 1435 ALELQLQVPLKVSLSAGRSWGHLLPL---------QEAWGPPL 1468


>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
            [Danio rerio]
          Length = 2239

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 131/474 (27%), Gaps = 93/474 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G    +      + ++  +   L+    +L      S      + 
Sbjct: 1741 VEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLAGHSF-SLTSPEDVA 1799

Query: 243  MYLFLITGIDLVD-----MSEGTLKSI--------------LSHSNITQLAKDLILNRLA 283
              LFL   +          ++ TL                  +   + +L     L  + 
Sbjct: 1800 EVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLKPLHPLPGVI 1859

Query: 284  SSGSAILKLNTLSEAVSS------------DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 I   N L++ V                R+    Q + A  TGR S      QN+P
Sbjct: 1860 LEWRRIT--NALTKVVFPLQREKKWHSHLKMDRIHPISQSHTA--TGRVSFTEPNIQNVP 1915

Query: 332  RQE-----------------------RSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            +                         +  +I  Q    L   +   D     S  +R   
Sbjct: 1916 KDFEIQMPTLIEESQTSQNGGSKMWCKRTKINRQLAPLLKVSDKSPDKGMQFSVSMRHAF 1975

Query: 369  IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
            +  +G  ++  D + +E R+LA ++ +   +    +G D++ +  A+        V    
Sbjct: 1976 VPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPASVDDNM 2035

Query: 429  RAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED---------- 474
            R   K +   + Y  GAK                ++ F         F            
Sbjct: 2036 RQQAKQICYGIIYGMGAKSLGEQMGIEENDAACYIETFKSRYNGIQNFLRETVQKCGKNG 2095

Query: 475  -----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                           +  +++++      AV   + G+A ++VK A     + +      
Sbjct: 2096 YVKTLLGRKRFLPGIKDSNVYIKSHAERQAVNTTVQGSAADIVKLATINIQRRI------ 2149

Query: 524  LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
              E F  V       S R +    R   R  +    I L     L+Y   + D 
Sbjct: 2150 -EEAFPGVPTSHQHPSIR-LGGRHRNQFRPLRGGYFI-LQLHDELIYEVAEEDV 2200


>gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens]
 gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu
 gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens]
 gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct]
          Length = 900

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 147/447 (32%), Gaps = 58/447 (12%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 428 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERF-LITSNNQLRE 486

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L+     S + +  L     L ++      + K+     
Sbjct: 487 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFV 546

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I      + 
Sbjct: 547 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPI-------QITTPKNFKG 597

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
             D +   S   R+  ++S G   + AD + IE R+L  ++G+   +K F   E  D++ 
Sbjct: 598 KEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFS 655

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + P+++V+   R   K +  A+ Y  G    A             L+ F Q  
Sbjct: 656 TLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKY 715

Query: 467 KSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+                     +H   ++ Q    AV   + G+A +L
Sbjct: 716 KKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADL 775

Query: 506 VKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR-VANVPRLVMRRHKRD 557
            K A         A H    +L   + +     V++         V      + +    +
Sbjct: 776 CKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALE 835

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTAT 584
           + + +P    L      G    L  A 
Sbjct: 836 LQLQVPLKVSLSAGRSWGHLVPLQEAW 862


>gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
          Length = 900

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 147/447 (32%), Gaps = 58/447 (12%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 428 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERF-LITSNNQLRE 486

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L+     S + +  L     L ++      + K+     
Sbjct: 487 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFV 546

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I      + 
Sbjct: 547 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPI-------QITTPKNFKG 597

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
             D +   S   R+  ++S G   + AD + IE R+L  ++G+   +K F   E  D++ 
Sbjct: 598 KEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFS 655

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + P+++V+   R   K +  A+ Y  G    A             L+ F Q  
Sbjct: 656 TLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKY 715

Query: 467 KSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+                     +H   ++ Q    AV   + G+A +L
Sbjct: 716 KKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADL 775

Query: 506 VKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR-VANVPRLVMRRHKRD 557
            K A         A H    +L   + +     V++         V      + +    +
Sbjct: 776 CKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALE 835

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTAT 584
           + + +P    L      G    L  A 
Sbjct: 836 LQLQVPLKVSLSAGRSWGHLVPLQEAW 862


>gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 100

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 54/87 (62%)

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           R  +YGGKL ENIVQA++RD+    M    + G+ IV+ VHDEIV + P    F+V   C
Sbjct: 13  RLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFTVADAC 72

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            LM   P WA GLPL A+GYE   YRK
Sbjct: 73  VLMATLPDWAAGLPLDADGYECDYYRK 99


>gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior]
          Length = 2176

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 122/374 (32%), Gaps = 58/374 (15%)

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRS 234
            L    + E  +      +   G  ++L  + +L  +++ E + L+     L        S
Sbjct: 1753 LYTFREVEMRIMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRKFNFSS 1812

Query: 235  SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
            S++          + G+   D    T K++L   +       +   +L ++ + ++    
Sbjct: 1813 SKEVGQ-------VLGL-YKDKKVSTSKTVLEKCDNPISTLVISWRKLNATKTKMIY--P 1862

Query: 295  LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
            L      D R+RG       + TGR S      QN+P+                     +
Sbjct: 1863 LLNLAQGDSRVRG--NCITCTVTGRVSMHEPNLQNVPKD-------------------FS 1901

Query: 355  DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     VR   +   G  ++ AD   +E R+L   + +    K      DI+    A
Sbjct: 1902 FADNNLVVSVRMAFVPVLGNIMLSADYCQLELRLLTHFSQDSILCKIMKQSGDIFKNIAA 1961

Query: 415  KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK----TMASHCGLDLQQFSQNVKSTS 470
            K  N   ++V+ E R   K +   + Y  G K                L+ F        
Sbjct: 1962 KWNNVAEEQVTNEMRQRTKQLCYGMIYGMGVKSLAENLCISEPEAQEFLESFMSAYPGIY 2021

Query: 471  TFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKA 509
             + +    E+HH                       ++ Q    +V  K+ G+A ++VKKA
Sbjct: 2022 KWLNDILEEAHHDGYVTTLLGRRREFPDLSSTKSSVRAQAERQSVNTKVQGSAADIVKKA 2081

Query: 510  WRAKHQGVLQLWKD 523
              +    +   + D
Sbjct: 2082 MISIEDKIRCYFPD 2095


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/513 (15%), Positives = 153/513 (29%), Gaps = 78/513 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNG-LPSSLKN 111
           L + L  E    V HN  F+   +K  LG+        +R   T +          +   
Sbjct: 179 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 238

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA+ +++      E       +CK               +  + +   Y  +D +AT 
Sbjct: 239 KSLAMKYTDMGDYDFELDKFKDDYCKAHKIK---KEDFTYDLIPFDIMWPYAAKDTDATI 295

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L    +P             D      +  Q + DRG  I +D + + Q  +     K 
Sbjct: 296 RLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKA 355

Query: 221 DE------DIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            E      ++ +L        +      LR+ LF   G+        T         + +
Sbjct: 356 REKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNE 415

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    + +       + KL       +  ++ +DG +R     +  +     S      
Sbjct: 416 LATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNL 475

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q LPR E                             ++ C++A  G +++  DL   E  
Sbjct: 476 QQLPRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 508

Query: 388 VLAWIAGEDWKIKAFANGE-------DIYVTTYAKAFNT--PIDKVSKE---QRAIGKVM 435
             A ++G+    + F N         D +       F        V K     R   K +
Sbjct: 509 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 568

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y  G        +          Q  K+   F +   A++   +++  + +F   
Sbjct: 569 TFGILYGSGPAKVAHSVNEA-----LLEQAAKTGEPFVECTVADAKE-YIETYFGQFPQL 622

Query: 496 DKLIGTACELVKK-AWRAKHQGVLQLWKDLTEG 527
            + I    + +K   +   H G  +   ++   
Sbjct: 623 KRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSE 655


>gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis
           familiaris]
          Length = 947

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/450 (15%), Positives = 139/450 (30%), Gaps = 58/450 (12%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     R++ + + +   L+    K+L+++   +             L+ 
Sbjct: 428 ELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVAGEQF-LITSNNQLQE 486

Query: 244 YLFLITGI----DLVDMSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILK-----L 292
            LF    +     +  +    L+ +   S + +  L     L ++      + K     +
Sbjct: 487 ILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILEYRRVHKTKSAFV 546

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   V   G +       G + TGR S      Q + +           I+       
Sbjct: 547 DGLLAFVRK-GSISSMWNQTG-TVTGRLSARHPNIQGISKHP---------IKITKPQNF 595

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                 + +   RS  +A      + AD + IE R+LA ++G+   +K F      D++ 
Sbjct: 596 KGTEGTMLTISPRSMFVAPESHTFLAADFSQIELRILAHLSGDPELLKLFRESGRDDVFS 655

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + P + V+   R   K +  ++ Y  G    A             L+ F Q  
Sbjct: 656 TLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGKERLAACLGVTVQEAAQFLESFLQKY 715

Query: 467 KSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+ H                        ++ Q    AV   + G+A +L
Sbjct: 716 KKIKDFVQTTIAQCHQTGYVASIMGRRRPLPRVHDQDQQLRAQAERQAVNFVVQGSAADL 775

Query: 506 VKKAWRAKHQGV-------LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR-D 557
            K A     + V        +L   + +     V++        +       ++  +   
Sbjct: 776 CKMAMIRIFRAVATSPTLTARLVAQIHDELLFEVEDSQIPEFAALVRGTMESLQYVRALG 835

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
           + + +P    L      G    L       
Sbjct: 836 LQLQVPLKVSLSAGPSWGHLVPLQKVLGPW 865


>gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
          Length = 975

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 150/472 (31%), Gaps = 68/472 (14%)

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
                  +G+D     W+     A     PS        L              L     
Sbjct: 333 WKCVAGFVGLDPRIAAWLIDPSDAA----PSFEDLVAKYLGNP---------TTLTVNSM 379

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
            G+      + T    ++       +    ++    L++    L   E  L  +   +  
Sbjct: 380 HGNSSRKTVNQTVRAKLRVLHRLTMHLCSQLQV-CGLWQLFWTL---ELPLIPILAVMES 435

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-- 254
              R++ + + ++  L+    K+L+++   +           + LR  LF    + L+  
Sbjct: 436 HRIRVNKEEMERMSALLGSRLKELEQEAHFVAGEQF-LITSNHQLREILFGKLRLHLLRP 494

Query: 255 -DMSEGTLKSIL---SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305
            D S  T    L   S + +  L     L R+      + K+     + L   +   G +
Sbjct: 495 QDASPATGLRRLPSTSGAELNALQDLHPLPRIILEYRQVHKIKSTFVDGLLACM-KKGSV 553

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + +GR S      Q + +              + + ++        S   R
Sbjct: 554 SSTWNQTG-TVSGRLSAKHPNIQGISKHPIQ----------ITKPQSFKGEEDELSISPR 602

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTPIDK 423
           +  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ T  ++  +   ++
Sbjct: 603 TAFVSSEGYTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVSPER 662

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           V+   R   K +  A+ Y  G    A             L+ F Q  K    F       
Sbjct: 663 VTHADREQTKKVVYAVVYGAGKERLAACLGVPVREAARFLESFLQKYKKIKDFTQATVAR 722

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                             +  +H   ++ Q    A    + G+A +L K A 
Sbjct: 723 CQQTGYVESIMGRRRPLPRIRAHDPQLRAQAERQAANFVVQGSAADLCKMAM 774


>gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 146/446 (32%), Gaps = 64/446 (14%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   + +    +D + + +   L+    K+L+++   +             LR 
Sbjct: 429 ELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIM-SNNQLRE 487

Query: 244 YLFLITGIDLVD----MSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L++ LS S   +  L     L +L      + K+     
Sbjct: 488 ILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFI 547

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I+       
Sbjct: 548 DGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IKISKPWNF 596

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                   +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 597 KGKEEETVTISPRTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 656

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + PI++V+   R   K +  ++ Y  G    A             L++F Q  
Sbjct: 657 TLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKY 716

Query: 467 KSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F                         +  +    ++ Q    AV   + G+A +L
Sbjct: 717 KKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADL 776

Query: 506 VKKAWRAKHQG-----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            K A                  V Q+  +L            +   RR+    + V    
Sbjct: 777 CKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQV---Q 833

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++ + +P    L      G  + L
Sbjct: 834 TLELQLQVPLKVNLSVGRSWGHLTPL 859


>gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu
          Length = 864

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 146/446 (32%), Gaps = 64/446 (14%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   + +    +D + + +   L+    K+L+++   +             LR 
Sbjct: 427 ELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIM-SNNQLRE 485

Query: 244 YLFLITGIDLVD----MSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L++ LS S   +  L     L +L      + K+     
Sbjct: 486 ILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFI 545

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I+       
Sbjct: 546 DGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IKISKPWNF 594

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                   +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 595 KGKEEETVTISPRTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 654

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + PI++V+   R   K +  ++ Y  G    A             L++F Q  
Sbjct: 655 TLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKY 714

Query: 467 KSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F                         +  +    ++ Q    AV   + G+A +L
Sbjct: 715 KKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADL 774

Query: 506 VKKAWRAKHQG-----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            K A                  V Q+  +L            +   RR+    + V    
Sbjct: 775 CKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQV---Q 831

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++ + +P    L      G  + L
Sbjct: 832 TLELQLQVPLKVNLSVGRSWGHLTPL 857


>gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus]
 gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 146/446 (32%), Gaps = 64/446 (14%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   + +    +D + + +   L+    K+L+++   +             LR 
Sbjct: 429 ELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIM-SNNQLRE 487

Query: 244 YLFLITGIDLVD----MSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L++ LS S   +  L     L +L      + K+     
Sbjct: 488 ILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFI 547

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I+       
Sbjct: 548 DGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IKISKPWNF 596

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                   +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 597 KGKEEETVTISPRTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 656

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + PI++V+   R   K +  ++ Y  G    A             L++F Q  
Sbjct: 657 TLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKY 716

Query: 467 KSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F                         +  +    ++ Q    AV   + G+A +L
Sbjct: 717 KKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADL 776

Query: 506 VKKAWRAKHQG-----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            K A                  V Q+  +L            +   RR+    + V    
Sbjct: 777 CKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQV---Q 833

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++ + +P    L      G  + L
Sbjct: 834 TLELQLQVPLKVNLSVGRSWGHLTPL 859


>gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens]
          Length = 891

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 145/428 (33%), Gaps = 59/428 (13%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 428 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERF-LITSNNQLRE 486

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L+     S + +  L     L ++      + K+     
Sbjct: 487 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFV 546

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I      + 
Sbjct: 547 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPI-------QITTPKNFKG 597

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
             D +   S   R+  ++S G   + AD + IE R+L  ++G+   +K F   E  D++ 
Sbjct: 598 KEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFS 655

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + P+++V+   R   K +  A+ Y  G    A             L+ F Q  
Sbjct: 656 TLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKY 715

Query: 467 KSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+                     +H   ++ Q    AV   + G+A +L
Sbjct: 716 KKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADL 775

Query: 506 VKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            K A         A H    +L   + +     V++        +  V R +    +  +
Sbjct: 776 CKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAAL--VRRTMESLEQVPL 833

Query: 559 HIVLPSSR 566
            + L + R
Sbjct: 834 KVSLSAGR 841


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 39/241 (16%)

Query: 248 ITGIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASSG-SAILKLNTLSEAVSSDGRL 305
             G       E  L ++L  H  I ++     L +L S+    +LKL         + R+
Sbjct: 2   KKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKL----ALKDKNSRI 57

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +    G + TGR S      QN+P                          G  +   +
Sbjct: 58  YSSFLQTG-TATGRLSSKDPNLQNIPAH------------------------GQYAKDYK 92

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           SC +A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + +
Sbjct: 93  SCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESN 148

Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            E R++ K +   L Y  G    ++  K  A      ++++ +N  S   + +  + ++ 
Sbjct: 149 YETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNKAK 208

Query: 482 H 482
            
Sbjct: 209 Q 209


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/487 (15%), Positives = 143/487 (29%), Gaps = 133/487 (27%)

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQ-----LFGEYCKRDVEATRELFKRLIP---- 179
           ++        S ++  +          W          Y  +D+E    + +   P    
Sbjct: 3   ESAARYRLPVSKEARAWFPGLHTRPTEWAAPFPAEQLVYMVQDIEIPYAIAQHQRPRIKE 62

Query: 180 -----LSDGERDLWLLDQTINDRGYRIDLD-----------------------LVLKLQE 211
                +   E +       +  RG  ID++                       L   LQ 
Sbjct: 63  QKLARVVHLENEAVPALAAMEMRGVCIDVERWRSILARKQARQQALEPGLRETLGTALQR 122

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYA-------LRMYLFL----------------- 247
                +  L  +  +L +    +  Q+         L  +                    
Sbjct: 123 ACDDYQVALTREEKRLVEAYRANPAQSSWGLFRRKGLAQWQATHKKPPQPKERGTINLAS 182

Query: 248 ---------ITGIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
                      G+ +    E TL+     H+ +  L +   L++ ASS         L  
Sbjct: 183 PPQLLAALRALGVPVSATDEETLEPYAKEHAAVASLLQWKELHKFASSFG-----ENLLA 237

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V +DGRLR      GA+ +GR        Q +P                       +  
Sbjct: 238 MVDTDGRLRTDYAQIGAA-SGRIICSKPNLQQIP---------------------AEEEE 275

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
               + VR C +A  G +++ ADL+ IE R+LA ++ +   ++ FA G+D++  T    F
Sbjct: 276 EGQEEPVRHCFVAPPGYRILKADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMF 335

Query: 418 NTPIDKVSKEQ-------RAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNV 466
           +   +  +K         R I K +   L Y  GA      A          ++ + +  
Sbjct: 336 HLSPETDTKRHLYKGVPGRKIAKTINFGLAYGMGANGLANRAGVDLPTAKSLIRTYFETY 395

Query: 467 KST------------------------STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           +                           TF     +   +  ++      A    + GT 
Sbjct: 396 RGIARWLPLTAKQALEQGYAVTLAGRRRTFASIPTSVDWNREVRASAERSAKNHPIRGTN 455

Query: 503 CELVKKA 509
            +++K+A
Sbjct: 456 ADILKRA 462


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/513 (15%), Positives = 153/513 (29%), Gaps = 78/513 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNG-LPSSLKN 111
           L + L  E    V HN  F+   +K  LG+        +R   T +          +   
Sbjct: 175 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 234

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA+ +++      E       +CK               +  + +   Y  +D +AT 
Sbjct: 235 KSLAMKYTDMGDYDFELDKFKDDYCKAHKIK---KEDFTYDLIPFDIMWPYAAKDTDATI 291

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L    +P             D      +  Q + DRG  I +D + + Q  +     K 
Sbjct: 292 RLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKA 351

Query: 221 DE------DIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            E      ++ +L        +      LR+ LF   G+        T         + +
Sbjct: 352 REKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNE 411

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    + +       + KL       +  ++ +DG +R     +  +     S      
Sbjct: 412 LATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNL 471

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q LPR E                             ++ C++A  G +++  DL   E  
Sbjct: 472 QQLPRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 504

Query: 388 VLAWIAGEDWKIKAFANGE-------DIYVTTYAKAFNT--PIDKVSKE---QRAIGKVM 435
             A ++G+    + F N         D +       F        V K     R   K +
Sbjct: 505 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 564

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y  G        +          Q  K+   F +   A++   +++  + +F   
Sbjct: 565 TFGILYGSGPAKVAHSVNEA-----LLEQAAKTGEPFVECTVADAKE-YIETYFGQFPQL 618

Query: 496 DKLIGTACELVKK-AWRAKHQGVLQLWKDLTEG 527
            + I    + +K   +   H G  +   ++   
Sbjct: 619 KRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSE 651


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/513 (15%), Positives = 153/513 (29%), Gaps = 78/513 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNG-LPSSLKN 111
           L + L  E    V HN  F+   +K  LG+        +R   T +          +   
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA+ +++      E       +CK               +  + +   Y  +D +AT 
Sbjct: 265 KSLAMKYTDMGDYDFELDKFKDDYCKAHKIK---KEDFTYDLIPFDIMWPYAAKDTDATI 321

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L    +P             D      +  Q + DRG  I +D + + Q  +     K 
Sbjct: 322 RLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKA 381

Query: 221 DE------DIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            E      ++ +L        +      LR+ LF   G+        T         + +
Sbjct: 382 REKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNE 441

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    + +       + KL       +  ++ +DG +R     +  +     S      
Sbjct: 442 LATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNL 501

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q LPR E                             ++ C+IA  G +++  DL   E  
Sbjct: 502 QQLPRDE---------------------------SIIKGCVIAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWIAGEDWKIKAFANGE-------DIYVTTYAKAFNT--PIDKVSKE---QRAIGKVM 435
             A ++G+    + F N         D +       F        V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y  G        +          Q  K+   F +   A++   +++  + +F   
Sbjct: 595 TFGILYGSGPAKVAHSVNEA-----LLEQAAKTGEPFVECTVADAKE-YIETYFGQFPQL 648

Query: 496 DKLIGTACELVKK-AWRAKHQGVLQLWKDLTEG 527
            + I    + +K   +   H G  +   ++   
Sbjct: 649 KRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSE 681


>gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio]
 gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio]
          Length = 1146

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 130/389 (33%), Gaps = 52/389 (13%)

Query: 170  TRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              EL  +L         S  E+ +  +   +      +D + + K  E++  + K+L+++
Sbjct: 688  MEELHYKLRTQGLWQLYSGIEQKMIPVLAAMESYKMHVDKEALKKTSEMLGSKLKQLEQE 747

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKS-ILSHSNITQLAKDLI 278
              +           +  LR+ LF    +    +   + +   +    S + + QL K   
Sbjct: 748  AHQAAGQKF-LVSSSAQLRLILFEKLRLHELCENKKLPKTVKQQQSTSETALLQLQKLHP 806

Query: 279  LNRLASSGSAILKLNT-LSEAVSSDGR---LRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L ++      I K+ T   + + S  R   +  T     ++ +GR S      Q LP+  
Sbjct: 807  LPKIILEYRQIHKIKTTFVDGILSCTRKTFISSTWN-QTSTVSGRLSAKHPNFQALPK-- 863

Query: 335  RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                     +Q   +         + +   R+  I   G   + AD   +E R+LA ++ 
Sbjct: 864  -------LPLQISKKQYIHGKASDIVTVHPRAMFIPREGWTFLSADFCQVELRLLAHLSA 916

Query: 395  EDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449
            +   ++ F +   D +    A+      D+VS E R   K +  ++ Y  G    + +  
Sbjct: 917  DPQLLRIFQSPEADAFTMLAAQWKGVSEDRVSLEDREQAKRIVYSVVYGAGRERLSGILG 976

Query: 450  TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488
              A         F +  +    F                            S    +++Q
Sbjct: 977  VSAEEASRFQDSFLKTYREVPAFIQHTIQHCQSHGFVRSIMGRRRFLPHIHSADWSLRNQ 1036

Query: 489  YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                AV   L G+A +L K A       V
Sbjct: 1037 AERQAVNFVLQGSAADLAKLAMIRICSQV 1065


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/513 (15%), Positives = 153/513 (29%), Gaps = 78/513 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNG-LPSSLKN 111
           L + L  E    V HN  F+   +K  LG+        +R   T +          +   
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA+ +++      E       +CK               +  + +   Y  +D +AT 
Sbjct: 265 KSLAMKYTDMGDYDFELDKFKDDYCKAHKIK---KEDFTYDLIPFDIMWPYAAKDTDATI 321

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L    +P             D      +  Q + DRG  I +D + + Q  +     K 
Sbjct: 322 RLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKA 381

Query: 221 DE------DIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            E      ++ +L        +      LR+ LF   G+        T         + +
Sbjct: 382 REKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNE 441

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    + +       + KL       +  ++ +DG +R     +  +     S      
Sbjct: 442 LATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNL 501

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q LPR E                             ++ C++A  G +++  DL   E  
Sbjct: 502 QQLPRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWIAGEDWKIKAFANGE-------DIYVTTYAKAFNT--PIDKVSKE---QRAIGKVM 435
             A ++G+    + F N         D +       F        V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y  G        +          Q  K+   F +   A++   +++  + +F   
Sbjct: 595 TFGILYGSGPAKVAHSVNEA-----LLEQAAKTGEPFVECTVADAKE-YIETYFGQFPQL 648

Query: 496 DKLIGTACELVKK-AWRAKHQGVLQLWKDLTEG 527
            + I    + +K   +   H G  +   ++   
Sbjct: 649 KRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSE 681


>gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS]
 gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 657

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/464 (15%), Positives = 143/464 (30%), Gaps = 54/464 (11%)

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLV 206
            ++   +  +       ++VE        +    + E  +  +   +N    ++ID  L+
Sbjct: 216 NKSTIEERLKQTRRLAVKEVEV-MNNDNMIKVFQEQEMIIDGVLIEMNYCNEFKIDNKLL 274

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            + ++ + +E+ K++ +  K+    I  S      +  +    GID +     T K ILS
Sbjct: 275 NEQRKKLIEEQHKIEMETKKIIGRTINLSSPEQVKKELIRFNIGIDGIKKKATTDKKILS 334

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR---LRGTLQFYGASRTGRWSGC 323
            S+    AK ++  R  S   + + +  + +     G    +R T     A  TGR    
Sbjct: 335 QSDHP-FAKLVLEYRKISKLLSGV-IEQIRKCCIKSGDEYFIRTTWS-QTAIVTGRIQSK 391

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               Q +P+Q  S                    L       R   I  N    V  D   
Sbjct: 392 SPNLQQIPKQSFS--------------------LPQCLIIPRDLFITHNNNTFVAIDYNQ 431

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA    +   I+ F +  D++    A      ++ ++ ++R   K +     Y  
Sbjct: 432 IELRILADFTKDHHLIEFFKSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCIYGI 491

Query: 444 G----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD------------ 487
           G    A             L+ F     +   +++     +                   
Sbjct: 492 GPFSLADQLHVSLDESKAFLESFLDQFPAFKKWKEETITNASTTGFVHTINNRRRRINNL 551

Query: 488 ----------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                     +    AV   + GTA +++K       + +   W  +        +    
Sbjct: 552 TDCNDKKTVAESKRIAVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLE 611

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +    +  V   +    +  V + +P    +      G     N
Sbjct: 612 VPDHLLDEVCVTLKHLMEHIVKLEVPLVVTVETGKKWGSLHPYN 655



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
             + +Q  + DI+   M    K       G  ++L +HDEIV E PD     +  +C
Sbjct: 568 VNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLEVPDHL---LDEVC 621


>gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca]
          Length = 769

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 29/316 (9%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     ++D + + +   L+    K+L+++   +             LR 
Sbjct: 426 ELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAGEQF-LITSNNQLRE 484

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILK-----L 292
            LF    + L+     +    L+ +   S + +  L     L ++      + K     +
Sbjct: 485 VLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVHKTKSAFV 544

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           IQ       
Sbjct: 545 DGLLACMRK-GSISSTWNQTG-TVTGRLSARHPNIQGISKHP---------IQITKPQNF 593

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                 + +   RS  +A  G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 594 KGVEGAMLTISPRSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 653

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++    P + V+   R   K +  +  Y  G    A             L+ F Q  
Sbjct: 654 TLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAACLGVTVQEAAWFLESFLQKY 713

Query: 467 KSTSTFEDWEQAESHH 482
           K    F     A+ H 
Sbjct: 714 KKVKDFVQTTIAQCHQ 729


>gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
 gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
          Length = 96

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M  L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D  +   +P  +L
Sbjct: 1  MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60

Query: 59 QYLRDETVMCVAHNSLFERILFKKTL 84
            L DETV   A N+ FER+   + L
Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYL 86


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 145/447 (32%), Gaps = 58/447 (12%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 491 ELPLIPILAVMESHTIQVNKEEMEKTSSLLGARLKELEQEAHFVAGEQFLIM-SNNQLRE 549

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+          L+     S + +  L     L ++      + K+     
Sbjct: 550 ILFGKLKLHLLSPRNCFPRTGLQKYPSTSEAVLNALRDVHPLPKIILEYRQVHKIKSTFV 609

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           IQ       
Sbjct: 610 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IQITKPKNF 658

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                 + + C R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 659 KGKEDEILTICPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 718

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + P++ V+   R   K +  ++ Y  G    A             L+ F Q  
Sbjct: 719 TLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAGKERLAACLGVPVQEAAQFLESFLQKY 778

Query: 467 KSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+                     +    +Q Q    AV   + G+A +L
Sbjct: 779 KKIKDFAQAAIAQCHQTGYMVSIMGRRRPLPRIHARDQQLQAQAERQAVNFVVQGSAADL 838

Query: 506 VKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR-VANVPRLVMRRHKRD 557
            K A         A H    +L   + +     V++         V      + +    +
Sbjct: 839 CKLAMIRVFAAVAASHTLTARLVAQIHDELLFEVEDSQIPECAALVRRTMESLEQVQVLE 898

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTAT 584
           + + +P    L      G    L  A 
Sbjct: 899 LQLQVPLKVSLSAGRSWGHLVPLQEAW 925


>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
          Length = 2593

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 130/479 (27%), Gaps = 98/479 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G    +      + ++  +   L+    +L      S      + 
Sbjct: 2090 VEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLAGHSF-SLTSPEDVA 2148

Query: 243  MYLFLITGIDLVD-----MSEGTLKSI--------------LSHSNITQLAKDLILNRLA 283
              LFL   +          ++ TL                  +   + +L     L  + 
Sbjct: 2149 EVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLKPLHPLPGVI 2208

Query: 284  SSGSAILKLNTLSEAVSS------------DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 I   N L++ V                R+    Q + A  TGR S      QN+P
Sbjct: 2209 LEWRRIT--NALTKVVFPLQREKKWHSHLKMDRIHPISQSHTA--TGRVSFTEPNIQNVP 2264

Query: 332  RQER---------------------------SEEILTQTIQ-ALNRGETIADPLGLASDC 363
            +                                  + + +   L   +   D     S  
Sbjct: 2265 KDFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINRLLAPLLKVSDKSPDKGMQFSVS 2324

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   +  +G  ++  D + +E R+LA ++ +   +    +G D++ +  A+        
Sbjct: 2325 MRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPAS 2384

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED----- 474
            V    R   K +   + Y  GAK                ++ F         F       
Sbjct: 2385 VDDNMRQQAKQICYGIIYGMGAKSLGEQMGIEENDAACYIETFKSRYNGIQNFLRETVQK 2444

Query: 475  ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                +  +++++      AV   + G+A ++VK A     + + 
Sbjct: 2445 CGKNGYVKTLLGRKRFLPGIKDSNVYIKSHAERQAVNTTVQGSAADIVKLATINIQRRI- 2503

Query: 519  QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                   E F  V       S R +    R   R  +    I L     L+Y   + D 
Sbjct: 2504 ------EEAFPGVPTSHQHPSIR-LGGRHRNQFRPLRGGYFI-LQLHDELIYEVAEEDV 2554


>gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens]
          Length = 579

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 143/428 (33%), Gaps = 59/428 (13%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 61  ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERF-LITSNNQLRE 119

Query: 244 YLFLITGIDLVD----MSEGTLKSI--LSHSNITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L+         +  L     L ++      + K+     
Sbjct: 120 ILFGKLKLHLLSQRNSLPRTGLQKYPSTVSEALNALRDLHPLPKIILEYRQVHKIKSTFV 179

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I      + 
Sbjct: 180 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPI-------QITTPKNFKG 230

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
             D +   S   R+  ++S G   + AD + IE R+L  ++G+   +K F   E  D++ 
Sbjct: 231 KEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFS 288

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           T  ++  + P+++V+   R   K +  A+ Y  G    A             L+ F Q  
Sbjct: 289 TLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKY 348

Query: 467 KSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACEL 505
           K    F     A+                     +H   ++ Q    AV   + G+A +L
Sbjct: 349 KKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADL 408

Query: 506 VKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            K A         A H    +L   + +     V++        +  V R +    +  +
Sbjct: 409 CKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAAL--VRRTMESLEQVPL 466

Query: 559 HIVLPSSR 566
            + L + R
Sbjct: 467 KVSLSAGR 474


>gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus]
          Length = 858

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 150/462 (32%), Gaps = 66/462 (14%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             L++    L   E  L  +   +     +++ + + +   L+    K+L+++   +   
Sbjct: 407 YSLWQLFWTL---ELPLIPILAVMERHSVQVNKEEMERTSALLGARLKELEQEAHFVAGE 463

Query: 231 IIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSI--LSHSNITQLAKDLILNRLASS 285
                     LR  LF    + L+    + +  L+     S + +  L     L ++   
Sbjct: 464 RF-LITSNNQLREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLNALQDLHPLPKIILE 522

Query: 286 GSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              + K+     + L   +   G +  T    G + TGR S      Q + R        
Sbjct: 523 YRQVHKIKSTFVDGLLACMRE-GSISSTWNQTG-TVTGRLSAKHPNIQGISRHPIHITKP 580

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
             T    +   TI+          R+  ++S G   + AD + IE R+LA ++G+   +K
Sbjct: 581 QNTKGKEDEILTISP---------RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELLK 631

Query: 401 AFANG--EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454
            F     ED++ T  ++  N P++ V+   R   K +  ++ Y  G    A         
Sbjct: 632 LFHESEREDVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYGAGKERLAACLGVAVPE 691

Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493
               L+ F Q  K  S F                         +  +    ++ Q    A
Sbjct: 692 AARFLETFLQKYKKISDFAQAAIAQCHQRGYVTSVTGRRRPLPRICAQEPHLRAQAERQA 751

Query: 494 VKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542
           V   + G+A +L K A                + V Q+  +L            +   R 
Sbjct: 752 VNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIHDELLFEVEDAQIPEFAALVRG 811

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                + V      ++ + +P    L      G  + L  A 
Sbjct: 812 TMESLQQVPAL---ELQLQVPLKVSLSVGRSWGHLAPLQEAV 850


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 79/513 (15%), Positives = 152/513 (29%), Gaps = 78/513 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNG-LPSSLKN 111
           L + L  E    V HN  F+   +K  LG+        +R   T +          +   
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA+ +++      E       +CK               +  + +   Y  +D +AT 
Sbjct: 265 KSLAMKYTDMGDYDFELDKFKDDYCKAHKIK---KEDFTYDLIPFDIMWPYAAKDTDATL 321

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L    +P             D      +  Q + DRG  I +D + + Q  +     K 
Sbjct: 322 RLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKA 381

Query: 221 DEDIV------KLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            E +       +L        +      LR+ LF   G+        T         + +
Sbjct: 382 REKLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNE 441

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           L+    + +       + KL       +  ++ +DG +R     +  +     S      
Sbjct: 442 LSTQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNL 501

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q LPR E                             ++ C++A  G +++  DL   E  
Sbjct: 502 QQLPRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWIAGEDWKIKAFANGE-------DIYVTTYAKAFNT--PIDKVSKE---QRAIGKVM 435
             A ++G+    + F N         D +       F        V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y  G        +          Q  K+   F +   A++   +++  + +F   
Sbjct: 595 TFGILYGSGPAKVAHSVNEA-----LLEQAAKTGEPFVECTVADAKE-YIETYFGQFPQL 648

Query: 496 DKLIGTACELVKK-AWRAKHQGVLQLWKDLTEG 527
            + I    + +K   +   H G  +   ++   
Sbjct: 649 KRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSE 681


>gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 103

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M ++ ID++T S   + K G + YAE     I L   + D  PV ++D      +P ++L
Sbjct: 2  MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61

Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            L DE V   A N+ FER+     L       RW
Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWLKK--NCNRW 94


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 92/510 (18%), Positives = 166/510 (32%), Gaps = 94/510 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAMPSDLLQ 59
           L +D ET         G+  Y++     L  +    E    PV+L        +P ++++
Sbjct: 38  LAVDTET--------TGLDIYSDTFRCRLVQFGTQSEAWVLPVEL-----GGGIPENVIE 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW---ICTSVLARTNGLPSSLKNACLAL 116
            L +   + V  N+ ++  +    +G       W   + T +LA+    P   +      
Sbjct: 85  ALYEVDKL-VMQNASYDLQVL-DQIGYAAMEDLWPKVLDTQILAKLVD-PRPFEAGGFGH 141

Query: 117 NFSE------HLTKMEEGKALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRDVE 168
           +  E         + E  K L+ +  K    +     +  +  H +    +  Y   D  
Sbjct: 142 SLEELIAEFIDKEQAENVKGLMTKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTI 197

Query: 169 ATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            T  +  +L PL           E  L  +   I+ +G+ +D++    L        +K 
Sbjct: 198 FTARICSKLAPLVPDVSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALS--DKWLYEKS 255

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH------SNITQLA 274
             D +  T+  + +   T      L    G+ +   +E   + +          +  +LA
Sbjct: 256 VWDAIAFTEYGLENVNSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELA 314

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +   +     +       LS   S D R   T      +RT R S      Q LP   
Sbjct: 315 AIIQEAKKLGKWNKTWVAKFLSVRDSED-RCH-TFVNPLQARTSRMSITGIPAQTLP--- 369

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                    +   VR C +A  G+ +   D    E RVLA ++G
Sbjct: 370 ------------------------ASDWIVRRCFVADPGQVMASVDYQTQELRVLAALSG 405

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS- 453
           +   I+AF  G D++  T            S+  R +GK+      Y GGAK     A  
Sbjct: 406 DQTMIEAFKTGADLHQMTA---------DASQVVRKVGKMANFLTVYGGGAKTLAEQAHI 456

Query: 454 ---HCGLDLQQFSQNVKSTSTFEDWEQAES 480
                   L  F++     + +      E+
Sbjct: 457 DFPTAKRVLDGFAKTYPGVARYSKKLAMEA 486



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
           A S    M + +   A   ++   A ++V+K  +  +   +      T      +     
Sbjct: 402 ALSGDQTMIEAFKTGADLHQMTADASQVVRKVGKMANFLTVYGGGAKTLAEQAHID--FP 459

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
            + R +    +      +    + + + R     +  G    ++++       RTY    
Sbjct: 460 TAKRVLDGFAKTYPGVARYSKKLAMEAGRNGYIVNAMGRRLPVDSS-------RTYSA-- 510

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETPDT-PYFSVGTLCSLM 651
              ++Q+ SRD+ C  +    + G+   L   +HDE+V+  P     +    +  LM
Sbjct: 511 LNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEVVASLPAGQAEWGAKEIARLM 567


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/513 (14%), Positives = 148/513 (28%), Gaps = 78/513 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNG-LPSSLKN 111
           L + L  +    V HN  F+   +   LG+        +R   T +          +   
Sbjct: 205 LQKILDSKNHQIVFHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             LA+ +++      E       +CK            +  +  + +   Y  +D +AT 
Sbjct: 265 KSLAMKYTDMGDYDFELDKFKEDYCKAHKIK---KEDFSYDLIPFDIMWPYAAKDTDATL 321

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L    +P             D      +  Q + DRG  I +D + + Q  +     K 
Sbjct: 322 RLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQYQLTHNLNKA 381

Query: 221 DEDIV------KLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            E +       +L        +      LR+ LF   G+        T     +   + +
Sbjct: 382 REKLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTNAEALNE 441

Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           LA    + +       + KL       +  ++ +DG +R     +  +     S      
Sbjct: 442 LATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNL 501

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q LPR E                             ++ C++A  G +++  DL   E  
Sbjct: 502 QQLPRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWIAGEDWKIKAFAN-------GEDIYVTTYAKAFNT--PIDKVSKE---QRAIGKVM 435
             A ++G+    + F N         D +       F        V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y  G       A       +   +    T              +++  + +F   
Sbjct: 595 TFGILYGSGP------AKVAHSVNEALLEQAAKTGEPFVECTVADAKDYIETYFGQFPQL 648

Query: 496 DKLIGTACELVKKA-WRAKHQGVLQLWKDLTEG 527
            + I    + +K   +   H G  +   ++   
Sbjct: 649 KRWIDKCHDQIKNFGFIYSHFGRKRRLHNIHSE 681


>gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
               +  R  TYG KL ENIVQA SRD+L E M+     G  +V+ +HDE V + P    
Sbjct: 1   NTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNR- 59

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            S+ T+  LMTK P WA GL L A G+ +  Y+K
Sbjct: 60  -SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/595 (16%), Positives = 190/595 (31%), Gaps = 116/595 (19%)

Query: 6   IDIETRSPQPLPK---VGVWAYAEQ--AVITLCAYA-WDDEPVKLWDRTEQSAMPSDLLQ 59
           +D+ET     +     VG+  Y     +      +    +  V+    TE+    + +L 
Sbjct: 88  LDVETT-GLDIYNDILVGICLYNPDLPSAYVPFNHTDLQNRRVE-GQMTEEECK-AVMLP 144

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNF 118
           YL ++ + C+ HN  F+  +     G  I +  W    +           LK        
Sbjct: 145 YLANKDLKCINHNIKFDDKMITFNWGQRIANVWWDTNIASWVLNENEKHGLKPLYNKYIL 204

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK-RDVEATRELFKRL 177
           +   +  + G       C              +  + W L+    +  + EA R  +++L
Sbjct: 205 NGEGSDEDFGDLFEGIPCNYIPIEIFSIYGANDGFKTWALYQFQKQYLNPEAKRADYRKL 264

Query: 178 IPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE-------------- 222
             +  + E  L  +   +  RG  I  D   +L     +E ++ +               
Sbjct: 265 YDVFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNEEMQEKEALCDAYVREFEEYIK 324

Query: 223 ---DIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSE--GTLKSILS-HSNITQLAK 275
               +++LT G  + +      +   L+ I  +  V   E  GT   I+  H N  + A 
Sbjct: 325 ENATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRKEPRGTGDKIIQMHRNKAKKAG 384

Query: 276 DLILNRLAS-----------SGSAILKLNTLSEAVSSDGR-LRGTLQFYGASRTGRWSGC 323
                R                     ++ +          +  T   YGA  TGR+S  
Sbjct: 385 TKKGERFIEFLDNYQRYKECGKLLGTYIDKIPAVKCEKTNAVHTTFNQYGAV-TGRFSSS 443

Query: 324 V----FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
                   QN+P  E+S                           +R    A +G KLV  
Sbjct: 444 DTVTKINLQNIPSHEKS---------------------------IRKIFKARDGYKLVGG 476

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV------------SKE 427
           D + IE RVLA+ +G++    A+  G+D+Y    +K +  P +               K 
Sbjct: 477 DFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYEDCREFYPDGTVNPEGKH 536

Query: 428 QRAIGKVMELALGYQGGAKVFKTM---------------------ASHCGLDLQQFSQNV 466
           +R   K + L + Y+ GA+                               L +++ ++  
Sbjct: 537 RRTTMKSVLLGIMYERGAQAIGEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKTAEEY 596

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFA------VKDKLIGTACELVKKAWRAKHQ 515
              +T +  ++              +A      +   + G++ +++K A    ++
Sbjct: 597 GYVTTIKGRKRRLPDMQLSNHDDYRYAEAHRQSLNSVIQGSSADIMKLAMIEIYR 651


>gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus]
          Length = 822

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 141/421 (33%), Gaps = 58/421 (13%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   + +    +D + + +   L+    K+L+++   +             LR 
Sbjct: 429 ELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIM-SNNQLRE 487

Query: 244 YLFLITGIDLVD----MSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+     +    L++ LS S   +  L     L +L      + K+     
Sbjct: 488 ILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFI 547

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           I+       
Sbjct: 548 DGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IKISKPWNF 596

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                   +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 597 KGKEEETVTISPRTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 656

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           T  ++  + PI++V+   R   K +  ++ Y  G                 +  ++    
Sbjct: 657 TLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAG-----------------YVTSILGRR 699

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG-----------VLQ 519
                 +  +    ++ Q    AV   + G+A +L K A                  V Q
Sbjct: 700 RPL--PRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQ 757

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
           +  +L            +   RR+    + V      ++ + +P    L      G  + 
Sbjct: 758 IHDELLFEVEDTQVPEFAALVRRIMESLQQV---QTLELQLQVPLKVNLSVGRSWGHLTP 814

Query: 580 L 580
           L
Sbjct: 815 L 815


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 127/355 (35%), Gaps = 52/355 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            +  +Y  DE +  V+ +   E I+    LGI+I    +  T ++        S  +   
Sbjct: 358 ENFKKYFEDENINKVSFDIK-EDIVLFNKLGIEINFP-YDDTMLMHYLIDPSRSSYDL-- 413

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD-----VEA 169
              FS+   K  E         KG  +   Y       +  +         D      + 
Sbjct: 414 -KTFSQAFLKY-EVLNEEDLLGKGR-NKKSYKDLSEKELGKYLSSIINAIEDSLDILTDK 470

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            +EL    +   D E  L  +   +   G+  D + + K+++ ++ E + L++ I +L  
Sbjct: 471 LKELSMYEL-YKDCEIKLSKVLAEMEITGFICDKNELEKIKDEVSLELEDLEKVIYELAG 529

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNR 281
               +      L + LF    + ++  ++    T   +L      H  I ++ +   + +
Sbjct: 530 SEF-NINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERYREMYK 588

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L S+      L +L E +  DGR+R T +    + TGR S      QNLP +        
Sbjct: 589 LKSTY-----LESLEECIDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLPIRT------- 635

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                 +R    A   K L+ AD + IE RVLA +A + 
Sbjct: 636 -----------------EEGRKIRKAFKADKDKVLIDADYSQIELRVLAHLANDK 673


>gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
               +  R  TYG KL ENIVQA SRD+L   M+     G  +V+ +HDE V + P    
Sbjct: 1   NTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDR- 59

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            S+ T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 60  -SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 82/204 (40%), Gaps = 32/204 (15%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G  +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF+ PID
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---- 474
           +V+ E R   K M   L Y     G A+  K       + ++Q+         +      
Sbjct: 61  EVTPELRRRVKAMSYGLAYGLSAYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVD 120

Query: 475 -----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              + +S +  +++     A+   + G+A +++K A     Q +
Sbjct: 121 QARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAI 180

Query: 518 L------QLWKDLTEGFACVVQEG 535
                  ++   + +     V EG
Sbjct: 181 KDAGLRSRILLQVHDELLFEVSEG 204


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 128/351 (36%), Gaps = 82/351 (23%)

Query: 283 ASSGSAILKLNTLSEAVS----SDGRLRGTLQFYGASRTGRWSGCV-FQPQNLPRQERSE 337
           A S  A+ +   L +AV+    +D +L   L +YGA  TGR+ G      QNL R     
Sbjct: 18  AKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGA-HTGRYGGNEGLNLQNLQR----- 71

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                      R  + A  G+ + VAD + IEAR++AW A E  
Sbjct: 72  -----------------------GSEHRKALTAPFGQLVYVADSSNIEARIVAWFAQETA 108

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRAIGKVMELALGYQGGAKVFKTMASHCG 456
            +  F NG D Y T     +  P+ K + + +R +GKV  L L Y  GA+ F        
Sbjct: 109 LLNQFKNGIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMGARTFH------- 161

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                         T E          W    +PE     K       ++KK W   +Q 
Sbjct: 162 -------------RTMESGPMGIPPMPWA---FPEIEKIVKTYRRTHPMIKKCWEIGNQI 205

Query: 517 V--------LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           +        L+ W+ LT    C+    G                   +++         +
Sbjct: 206 IQKMIRKDTLETWRCLTVRHQCLELPNGM---------YLQFPNLRNKEIQTAQGPQYEV 256

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
           VY          +  + +L+ +R YGGKL ENI QA++   + E M +  +
Sbjct: 257 VYDS-------YDYKSKKLVEKRLYGGKLLENIAQALAGLAMKEMMLDIQE 300


>gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana]
 gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis
            thaliana]
          Length = 2154

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/486 (15%), Positives = 151/486 (31%), Gaps = 75/486 (15%)

Query: 140  IDSPPYDCTRANHVQAWQLFGEY-----CKRDVEATRELFKRLIP----------LSDGE 184
                P     AN    W+          C R V  TR L   L            L+  E
Sbjct: 1651 KRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLQALTTIE 1710

Query: 185  RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
              L  +   +   G  ID++  L+ + ++  + + L++   +L             +   
Sbjct: 1711 MPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGMTFSLHN-PADIANV 1769

Query: 245  LFLITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN--------TL 295
            LF    + +  + S+G L        +  L  +  +  +      + KL         +L
Sbjct: 1770 LFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSL 1829

Query: 296  SEAVSSDGR--LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            ++   S  R  L G      ++ TGR S      Q++              +    G  +
Sbjct: 1830 AKLRLSTQRYTLHGRW-LQTSTATGRLSIEEPNLQSV--------EHEVEFKLDKNGRDV 1880

Query: 354  ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVT 411
            +          R   +       L+ AD + IE R++A  + +   I   +    D++  
Sbjct: 1881 SSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTM 1940

Query: 412  TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
              AK      D VS   R   K +   + Y  GA     +A        +  + ++S  +
Sbjct: 1941 IAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMGA---NRLAEQLECTSDEAKEKIRSFKS 1997

Query: 472  F-----------EDWEQAESHHLWMQDQYP-----------------EFAVKDKLIGTAC 503
                          + Q + +   ++ +                     AV     G+A 
Sbjct: 1998 SFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAA 2057

Query: 504  ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +++K A    +  + +   D+    +    E        +    R++++ H   V  V P
Sbjct: 2058 DIIKIAMINIYSAIAE---DVDTAASSSSSE---TRFHMLKGRCRILLQVHDELVLEVDP 2111

Query: 564  SSRRLV 569
            S  +L 
Sbjct: 2112 SYVKLA 2117


>gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis
           domestica]
          Length = 816

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 125/365 (34%), Gaps = 50/365 (13%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +    +++D + + +  +L+    K+L+++                 LR 
Sbjct: 431 ELPLIPILAVMETHKFQVDKEEMKRTSKLLGCRLKELEQEAHVAAGEQF-LVTSNNQLRE 489

Query: 244 YLFLITGIDLVDMSEGTLKSILSHS------NITQLAKDLILNRLASSGSAILKL----- 292
            LF    + L+  S+   K+ L          +  L     L ++      I K+     
Sbjct: 490 VLFDKLKLHLLCKSKTLPKTELQKHPSTSEAVLNALQDLHPLPKIILEYRQIHKVKSTFV 549

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + +GR S      Q + +           IQ       
Sbjct: 550 DGLLSCMRK-GFIAPTWNQTG-TVSGRLSAKKPNIQGISKHP---------IQITKHQYE 598

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA--NGEDIYV 410
                   +   R+  I+S G   + AD + IE R+LA ++ +   +K F      D+++
Sbjct: 599 QGKEDEKTTVSPRTMFISSKGYTFLAADFSQIELRILAHLSCDPELLKLFQEPESLDVFM 658

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466
           +  ++    P+++V+  +R   K +  ++ Y  G    A      +      ++ F Q  
Sbjct: 659 SLTSQWKGIPLEQVTHVEREQTKRIVYSVVYGAGKERLAACLGVTSLQSSQFIESFLQKY 718

Query: 467 KSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACEL 505
           K    F      + HH                       ++ Q    AV   + G+A +L
Sbjct: 719 KKIHDFTQETIMQCHHKGYVTSIMGRRRPLPNINAKDYRLRTQAERQAVNFVVQGSAADL 778

Query: 506 VKKAW 510
            K A 
Sbjct: 779 CKIAM 783


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           QR   K +   L Y       A+            +  + +       + +  +
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVPEYMERTR 114


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 87/263 (33%), Gaps = 37/263 (14%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           L       G + TGR S      QNLPR   +  +     +     + +           
Sbjct: 632 LHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITAAVAGNDAEEDGEEDLLG---------F 681

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R C +A++G  L+  D   IE RVLA + G+   ++A     DI+       F      V
Sbjct: 682 RRCFVATDGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--V 739

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMA--------------SHCGLDLQQFSQNVKSTS 470
           S E+R + K +   L Y  G K   T                ++    +  + + V   +
Sbjct: 740 STEERRLAKRVVFGLLYGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEA 799

Query: 471 TFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               +               S  L  +      A    + G+A +++K A  A  + VLQ
Sbjct: 800 RTNGFVRTLSGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQ 859

Query: 520 LWKDLTEGFACVVQEGGSISARR 542
            +          + +      R+
Sbjct: 860 RYDRSDVSLLSQIHDEMVFMVRK 882


>gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500]
          Length = 1192

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 89/642 (13%), Positives = 177/642 (27%), Gaps = 133/642 (20%)

Query: 57   LLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            + Q L          NS  + +IL  K + +                      L ++ L 
Sbjct: 591  VKQVLEYPYSYKHIWNSKPQLKILLSKGISLKHRLIDPKIALW----------LTDSDLH 640

Query: 116  LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +       M+  K            +     TR+     + L  + C + +  ++ L K
Sbjct: 641  KDKKLEYVYMDNAKGSKKMIGATKFHNISKLATRSGSTNHFDLAYQACYQTLILSQRLLK 700

Query: 176  RLIP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +L P     L + E  +  +   +   G   D ++    +EL+ ++   L      L   
Sbjct: 701  QLDPSSLKILFEIEMPVTPILARMEFIGIGFDDEICQNTRELVQKKIDYLIYKAHLLVPR 760

Query: 231  IIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSH--SNITQLAKDLILNRLASSG 286
            +         +   ++    +   D   ++  LK   S    ++  ++ +     +    
Sbjct: 761  LKLDMESKIQMSDVMYNWLKLTKPDSRTNKKVLKESYSTNAHHLETISHEHPFPNILMEY 820

Query: 287  SAILKL-----NTLSEA----VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---- 333
              +        + L +       +  R+  T+       TGR +      Q++       
Sbjct: 821  RKLSHHINNYADELRKYCYRSTDNSMRIYSTILQTIVP-TGRLAMVFPNLQSIAHPIEFK 879

Query: 334  -------------------ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
                               E     L       N    +       S  +R   +   G 
Sbjct: 880  VAPTFTPSPLSIASNSSDIEIPAVDLENHSSQYNNLVAMESKCETLSIKIRDSFLPKQGY 939

Query: 375  KLVVADLAGIEARVLAWIAGEDWKIKAFANG-EDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
              + AD + IE R+LA  + +   ++ F N   D++     +    P++++    R I K
Sbjct: 940  IFLSADYSQIELRILAHFSQDPKLLEIFNNSTVDVFKLISHQMSKIPLEQIKDSDRTIAK 999

Query: 434  VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
             +   + Y  G        +      +      K+T                        
Sbjct: 1000 HLCYGILYGMGIGKLAHDLNTTKDKAKAALLRFKTTYQ---------------------V 1038

Query: 494  VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + D L       +K  +     G  + ++++ E                           
Sbjct: 1039 LTDYLTSVGDSCLKNGFVETFFGRKRYFREVFE--------------------------- 1071

Query: 554  HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                           VY D K       +A  +              I Q  + DI    
Sbjct: 1072 ---------------VYKDTKVTNEVKESAKRK----------AKNTIPQGTAADISKLA 1106

Query: 614  MKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
            M    K     G    IVL VHDE++ E P++    V  +  
Sbjct: 1107 MIQVDKKLNERGIPAEIVLQVHDELLLEVPESQLAEVALIVK 1148


>gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera]
          Length = 1864

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 119/367 (32%), Gaps = 54/367 (14%)

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            L    D E  + +L   +   G  + L  +  L  +I +E   L+E    L      +  
Sbjct: 1438 LYTFKDIEMKIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKKF-NFS 1496

Query: 237  QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
             +  +   L L  G  +        K++L  S+       +   +L  + S I+    L 
Sbjct: 1497 SSKEVGEILGLYKGKKI-----SVNKAVLGQSDHPISNLVMSWRKLNVTKSKIIY--PLL 1549

Query: 297  EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                   R+ G      ++ TGR S      QN+PR   S++                  
Sbjct: 1550 NLAQHSSRIHG--NCVTSTLTGRISMHEPNLQNVPRDFNSKD------------------ 1589

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                +  VR   I + G  ++ AD   +E R+LA  + +           DI+    AK 
Sbjct: 1590 -NSFTISVRMAFIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKW 1648

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTF 472
             +   ++V  + R   K +   + Y  G K      S         L+ F       S +
Sbjct: 1649 NHVSENEVDDKMRRHTKQLCYGMIYGMGVKTLAENLSVDEVKAKEFLESFMNAYPGISKW 1708

Query: 473  EDWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAWR 511
             +    E+                          + Q    AV  K+ G+A ++VKKA  
Sbjct: 1709 LNNVLEEARINGYITTILERRRMFPGLTSINPMEKSQAERQAVNTKVQGSAADIVKKAMI 1768

Query: 512  AKHQGVL 518
               + + 
Sbjct: 1769 DIEKRMR 1775


>gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus]
          Length = 848

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 140/441 (31%), Gaps = 72/441 (16%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   + +    +D + + +   L+    K+L+++   +             LR 
Sbjct: 429 ELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIM-SNNQLRE 487

Query: 244 YLFLITGIDLVD----MSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAILKLNTLSE 297
            LF    + L+     +    L++ LS S   +  L     L +L               
Sbjct: 488 ILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQ--------- 538

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
                G +  T    G + TGR S      Q + +           I+            
Sbjct: 539 -----GSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IKISKPWNFKGKEE 583

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAK 415
              +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ T  ++
Sbjct: 584 ETVTISPRTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQ 643

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471
             + PI++V+   R   K +  ++ Y  G    A             L++F Q  K    
Sbjct: 644 WKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKD 703

Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           F                         +  +    ++ Q    AV   + G+A +L K A 
Sbjct: 704 FAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAM 763

Query: 511 RAKHQG-----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                            V Q+  +L            +   RR+    + V      ++ 
Sbjct: 764 IRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQV---QTLELQ 820

Query: 560 IVLPSSRRLVYSDVKGDCSYL 580
           + +P    L      G  + L
Sbjct: 821 LQVPLKVNLSVGRSWGHLTPL 841


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           QR   K +   L Y       A+            +  + +       + +  +
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLQYMERTR 114


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           QR   K +   L Y       A+            +  + +       + +  +
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
          Length = 2671

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/491 (14%), Positives = 137/491 (27%), Gaps = 96/491 (19%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
              E         +   G     +     + ++  +  +++    +L      S      L
Sbjct: 2161 RVEMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLAGRSF-SLTSHDDL 2219

Query: 242  RMYLFLITGIDLVD--MSEGTLKSI--------------------LSHSNITQLAKDLIL 279
               LFL   +       ++G  K++                     +   + +L     L
Sbjct: 2220 AQVLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKDVLEKLKALHPL 2279

Query: 280  NRLASSGSAILKLNTLSEAVSSDGR------------LRGTLQFYGASRTGRWSGCVFQP 327
              L      I   N L++ V    R            +    Q + A  TGR S      
Sbjct: 2280 PGLILEWKRIT--NALTKVVFPLQREKLLNPNLGMERIYPISQTHTA--TGRVSFTEPNI 2335

Query: 328  QNLPRQERSEEILTQT----------------IQALNRGETIADPLGLASDC-------- 363
            QN+P+    E                       +          P               
Sbjct: 2336 QNVPKDFEIEMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPAERGVSF 2395

Query: 364  ---VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               +R   +   G  ++ A  + +E R+LA ++ +   I+   +G D++ +  A+     
Sbjct: 2396 FVSMRHAFVPFPGGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEWKMID 2455

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTF---- 472
             + V+   R   K +   + Y  GAK          S     +  F         F    
Sbjct: 2456 PEAVTDTVRQQAKQICYGIIYGMGAKSLGEQMGIEESDAACYIDTFKSRYTGIQKFLKET 2515

Query: 473  -----------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                   +  + + +      AV   + G+A ++VK A     +
Sbjct: 2516 VRSCTRDGFVQTILGRRRYLPAIKDSNPYAKSHAERQAVNTTVQGSAADIVKTATVNIQK 2575

Query: 516  GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
             + + +  + +     VQ GG+  A R+ + P        R    +L     L+Y   + 
Sbjct: 2576 RLEETFPSVPKSHEHPVQAGGTGRAERLRHRPPPT-----RGAFFILQLHDELLYEAAQE 2630

Query: 576  DCSYLNTATSQ 586
            D   +     +
Sbjct: 2631 DAIQVAQIIKK 2641


>gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta]
          Length = 2672

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/464 (13%), Positives = 129/464 (27%), Gaps = 85/464 (18%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2158 VEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2216

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2217 EVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2276

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2277 GLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 2336

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2337 DFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERAADRGMPFSISM 2396

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2397 RHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2456

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------ 474
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2457 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMRETVKNC 2516

Query: 475  ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2517 KRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLET 2576

Query: 520  LWKDLTE-GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                    G    + +       R   +  +          + L
Sbjct: 2577 FHSTFKSHGHREGMLQSDRTGLLRKRKLQGMFCPVRGGFFILQL 2620


>gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus]
 gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus
            norvegicus]
          Length = 2547

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/421 (14%), Positives = 121/421 (28%), Gaps = 82/421 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S      + 
Sbjct: 2035 VEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHSF-SFTSADDIA 2093

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGS----AILKLNTLS 296
              LFL   +       ++G  K++ S    T+  + L L R  S+       +  L+ L 
Sbjct: 2094 QVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKDILNKLKDLHPLP 2153

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2154 GLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPVSQSHTATGRITFTEPNIQNVPR 2213

Query: 333  Q------------------ERSEEILTQTIQAL--------NRGETIADPLGLASDCVRS 366
                                + +  + +  Q +           E  +D     S  +R 
Sbjct: 2214 DFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKTSDRGVPFSVSMRH 2273

Query: 367  CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
              +   G  ++ AD + +E R+LA ++ +   I+   +G D++ +  A+      D V  
Sbjct: 2274 AFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGADVFRSIAAEWKMIEPDAVGD 2333

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED-------- 474
              R   K +   + Y  GAK                +  F    K  + F          
Sbjct: 2334 NLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYKGINHFMRDTVKNCRR 2393

Query: 475  -------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                             + ++ + +      A+   + G+A ++VK A     + +    
Sbjct: 2394 DGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKVATVNIQKQLETFH 2453

Query: 522  K 522
             
Sbjct: 2454 P 2454


>gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii]
 gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 98/282 (34%), Gaps = 60/282 (21%)

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           ++   +   G+ +++  + +L E   + R ++ ++ +++      S+ +   L       
Sbjct: 276 VVLAEMEMAGFGVEVGAMQRLHEESVRRRAQVLDENLEIMA-PYDSTGRVVHL------- 327

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
                                   + +   L++L  S + +     L       GR+  T
Sbjct: 328 ------------------------VMEHARLDKLIQSYTGLF----LQHVDRRTGRVYPT 359

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
           L   G + TGR S        LP                       +  G      R  +
Sbjct: 360 LNQVG-TATGRLSMSGANLMALPHD--------------------KEEFGEHLRNFRRAL 398

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  L+ AD + +E RV+A I  +     AF    D++  T A+ F  P+  V+  Q
Sbjct: 399 VARPGWLLLAADYSQVELRVIAHITQDPTLASAFRERRDVHAQTAARVFRVPLGAVTPAQ 458

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           R  GK +   L Y  GA     +A   GL   + S  + +  
Sbjct: 459 RQAGKQVNFGLVYGMGAA---KLARDIGLPDNEASDFIHTFR 497


>gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis]
          Length = 437

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 132/388 (34%), Gaps = 70/388 (18%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTY 239
           + E  L  L   ++  G  +D   + + + +I    K L++    L    I   SS+Q  
Sbjct: 12  NIELRLLPLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGHPILMWSSKQVC 71

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-- 297
                L+    ++    +  + +S+L           L++     S      ++ L +  
Sbjct: 72  ---EVLYDELKLEAPKGNRVSTESVLQTMADKHPFPGLVIEYRRLSKQMSTYIDGLEKEF 128

Query: 298 ----AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
                 S++ +L  +     A+ TGR S      Q LP++                    
Sbjct: 129 VSVPFRSTETKLIYSTWNQMATGTGRLSTAAPNMQTLPKRSLER---------------- 172

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVT 411
              L      +R   +A   ++L+  D   IE RV A  + +   I  F++G+  DIY  
Sbjct: 173 ---LSNLDVDIRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNSDIYTM 229

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ------- 464
             +      +  V+++ R   KV+ L L Y  G +   +MAS   + +   +Q       
Sbjct: 230 IASMIHKVEVKDVTQKFRDEAKVITLGLCYGMGVE---SMASKLKIPILTATQLKNSILN 286

Query: 465 NVKSTSTFE--------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
             K    F                      + +A+             AV   + G+A +
Sbjct: 287 RFKGVLQFMKNTISSARKTHFVETLSGRRRYFKAKDSGGEGLAHIDRQAVNSVIQGSAAD 346

Query: 505 LVKKAWRAK--------HQGVLQLWKDL 524
           L+K A             + +LQ+  +L
Sbjct: 347 LLKCAMILLWKPLSELDSEIILQIHDEL 374



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 17/119 (14%)

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           + V    +  +   ++   +   S RR  Y   K          + + R+         +
Sbjct: 289 KGVLQFMKNTISSARKTHFVETLSGRR-RYFKAKDS---GGEGLAHIDRQA------VNS 338

Query: 601 IVQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFS---VGTLCSLMT 652
           ++Q  + D+L   M    K  ++   +I+L +HDE+V + PD+       +  L  +M 
Sbjct: 339 VIQGSAADLLKCAMILLWKPLSELDSEIILQIHDELVIDCPDSDEVCEKVIALLNQVMC 397


>gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis]
          Length = 2435

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/470 (13%), Positives = 124/470 (26%), Gaps = 90/470 (19%)

Query: 184  ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
            E         +   G           + ++  +  + +  I +L      S      +  
Sbjct: 1927 EMPNQYCLALLELNGIGFSTAECETQKHVMEAKLSETENQIYQLAGHSF-SLTCPDDIAE 1985

Query: 244  YLFLITGIDLVD-----MSEGTLKSI-----------------LSHSNITQLAKDLILNR 281
             LFL   +           + TL                     +   + +L     L  
Sbjct: 1986 VLFLELKLPSDGESKMQRGKKTLGYTGRAVVNGNRVRLSKQFSTTKGVLEKLKALHPLPG 2045

Query: 282  LASSGSAI----------LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L      I          L+   L   +    R+    Q   A  TGR S      QN+P
Sbjct: 2046 LILEWRKITNAITKVIFPLQREKLLNPILGMERIYPVSQTNTA--TGRISFREPNIQNVP 2103

Query: 332  R---------------QERSEEILTQTIQALNRGETIADPLGLASDCV-----------R 365
            +                +R  ++         +   +       ++ +           R
Sbjct: 2104 KDFEIEMPILVEESPPTQRQHKMFNAPRNRNRKSSVLPCEPKNLTERLTSKKIPFAVSMR 2163

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA +  +   ++A  +G D++ +  A+      + V 
Sbjct: 2164 HAFVPFPGGLILAADYSQLELRILAHLCCDRRLLQALNDGADVFRSIAAEWKMMAPEAVG 2223

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F         F         
Sbjct: 2224 NDLRQQAKQICYGMIYGIGAKSLGEQMGVDEKDASYYIDSFKSRYPGIQKFLRETVKKCN 2283

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                 + + + Q    AV   + G+A ++VK A       + + 
Sbjct: 2284 QDGFVQTIMGRRRYLPTIRESNPYKKAQAERQAVNTVVQGSAADIVKTATV----NIQKQ 2339

Query: 521  WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             + L            S   +      +  +   K     +L     L+Y
Sbjct: 2340 LEALPSAVKSFEHLCSSTQNKWSGMAEKRQIMYPKHGGFFILQLHDELLY 2389


>gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2147

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 151/483 (31%), Gaps = 76/483 (15%)

Query: 140  IDSPPYDCTRANHVQAWQLFGEY-----CKRDVEATRELFKRLIP----------LSDGE 184
                P     AN    W+          C R V  TR L   L            L+  E
Sbjct: 1644 KRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLEALTTTE 1703

Query: 185  RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
              L  +   +   G  +D++  L+ + ++  + + L++   +L             +   
Sbjct: 1704 MPLVNVLADMELWGIGVDIEGCLRARNILRDKLRSLEKKAFELAGMTFSLHN-PADIANV 1762

Query: 245  LFLITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN--------TL 295
            LF    + +  + S+G L        +  L  +  +  +      + KL         +L
Sbjct: 1763 LFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSL 1822

Query: 296  SEAVSSDGR--LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            ++   S  R  L G      ++ TGR S      Q++  +   E IL         G+ +
Sbjct: 1823 AKLRLSTQRYTLHGRW-LQTSTATGRLSIEEPNLQSV--EHEVEFILD------KNGKDV 1873

Query: 354  ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVT 411
                       R   +       L+ AD + IE R++A  + +   I        D++  
Sbjct: 1874 NSDADSYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISQLRQPEGDVFTM 1933

Query: 412  TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
              AK        VS   R   K +   + Y  GA     +A        +  + ++S  +
Sbjct: 1934 IAAKWTGKAEGSVSPHDRDQTKRLIYGILYGMGA---NRLAEQLECSSDEAKEKIRSFKS 1990

Query: 472  F-----------EDWEQAESHHLWMQDQYP-----------------EFAVKDKLIGTAC 503
                          + Q + +   ++ +                     AV     G+A 
Sbjct: 1991 SFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAA 2050

Query: 504  ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +++K A    +  + +   D+    +    E        +    R++++ H  ++ + + 
Sbjct: 2051 DIIKIAMINIYSAIAE---DVDTTASSSSSE---TRFHMLKGRCRILLQVHD-ELVLEVD 2103

Query: 564  SSR 566
             S 
Sbjct: 2104 PSY 2106


>gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix
            jacchus]
          Length = 2550

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 122/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2036 VEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2094

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2095 EVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2154

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2155 GLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 2214

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  A+     S  +
Sbjct: 2215 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERAAERGMPFSVSM 2274

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+   +G D++ +  A+      + V
Sbjct: 2275 RHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIAAEWKMIEPESV 2334

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------ 474
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2335 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMRETVKNC 2394

Query: 475  ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2395 KRDGFVQTILGRRRYLPGIKENNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLET 2454

Query: 520  LW 521
              
Sbjct: 2455 FH 2456


>gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2382

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/565 (14%), Positives = 148/565 (26%), Gaps = 167/565 (29%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E    +    +   G         + + ++  +   L+    +L      S      + 
Sbjct: 1856 VEMPSQVCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAYRLAGHSF-SLTSVDDVA 1914

Query: 243  MYLFLITGIDL-----VDMSEGTL---------------KSILSHSNITQLAKDLILNRL 282
              LFL   +          S+ TL               +   +   + +L     L  L
Sbjct: 1915 QVLFLELHLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLRPLHPLPGL 1974

Query: 283  ASSGSAILKLNTLSEAVSS------------DGRLRGTLQFYGAS--------------R 316
                  I   N L++ V                R+    Q + A+              R
Sbjct: 1975 ILEWRRIT--NALTKVVFPLQREKKHHSALSMDRIYPIAQTHTATGNPQTPEPCETCNMR 2032

Query: 317  T-------GRWSGCVFQPQNLPR-------------------QERSEEILTQTIQALNRG 350
                    GR S      QN+P+                   +  +     +   A+  G
Sbjct: 2033 WLSLVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRRSAVPSG 2092

Query: 351  ETIADPLGLA-SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                   G A S  +R   +  +G  ++ AD + +E RVLA ++ +   ++    G D++
Sbjct: 2093 AAAGSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGGADVF 2152

Query: 410  VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQN 465
                A+  +   D V+   R   K +   + Y  GAK                ++ F   
Sbjct: 2153 RCIAAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGEQMGVEENDAACYIETFKSR 2212

Query: 466  VKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
             +  + F                            + +  ++      AV   + G+A +
Sbjct: 2213 YRGINAFLKETVKNCGKNGYVQTLMGRRRYLPGITNTNAHVKAHAERQAVNTTVQGSAAD 2272

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +VK A     + + Q +           Q    +  R                      S
Sbjct: 2273 IVKLATVNIQKRLRQTYP----AAPLSHQHPAPVMGRFCG----------------AGSS 2312

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
             RR V    +G                                             GY  
Sbjct: 2313 RRRAVTRHPRG---------------------------------------------GYF- 2326

Query: 625  VLTVHDEIVSETPDTPYFSVGTLCS 649
            VL +HDE++ ET D     V  +  
Sbjct: 2327 VLQLHDELIYETTDEDVIQVAQIVK 2351


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I      +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           QR   K +   L Y       A+            +  + +       + +  +
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus
            caballus]
          Length = 2701

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/421 (13%), Positives = 121/421 (28%), Gaps = 83/421 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2188 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2246

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGS----AILKLNTLS 296
              LFL   +       ++G  K++ S        + L L +  S+       +  L+ L 
Sbjct: 2247 EVLFLELKLPPNGEMKNQGGKKTLGSTRRGNDNGRKLRLGKQFSTSKDILNKLKALHPLP 2306

Query: 297  EAVSSDGRL-----RGTLQFYGASR-------------------TGRWSGCVFQPQNLPR 332
              +    R+     +       A R                   TGR +      QN+PR
Sbjct: 2307 GLILEWRRITNAITKVVFPLQRAKRLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 2366

Query: 333  Q-----------ERSEEILTQTIQALNRG----------------ETIADPLGLASDCVR 365
                            + L + +  + RG                E  +D     S  +R
Sbjct: 2367 DFEIKMPTLVGESPPSQALGKGLLPMGRGNEKSHGLNLGHQAQTEERASDRGMPFSVSMR 2426

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V 
Sbjct: 2427 HAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGADVFRSIAAEWKMIEPESVG 2486

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F       + F         
Sbjct: 2487 DDLRQQAKQICYGILYGMGAKSLGEQMGIKENDAACYIDSFKSKYTGINHFMRETVKNCK 2546

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                              + ++ + +      A+   + G+A ++VK A     + +   
Sbjct: 2547 RDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETF 2606

Query: 521  W 521
             
Sbjct: 2607 H 2607


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 109/324 (33%), Gaps = 61/324 (18%)

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            ++     + +         ++     +D      G              A+   L++L 
Sbjct: 245 AMERAGIGLDAPGFERVAGGWVRERRSLDTASAEPG---ESEEDFEARVAARAARLDKLV 301

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S+     +     + V +D R+R  L    A+ +GR+S      Q +P +          
Sbjct: 302 STYRWWAR-----DFVDADRRIRCRLHPL-AADSGRFSCTEPNLQQVPSEY--------- 346

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                            +  +R+C + + G +L+VAD A IE RV A +A  D     F 
Sbjct: 347 ----------------TAPGLRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFR 390

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQF 462
            G D +  T A     P  +V   +R + K +     +  GA+ F++ A+   GLDL + 
Sbjct: 391 AGRDPHRATAATLTGKPEPEVESHERKLAKAVNFGFLFGMGARRFRSYAASGYGLDLDER 450

Query: 463 SQNVKSTSTFEDWEQAESHHL--------------------WMQDQYP------EFAVKD 496
                  + F  +    + H                       +  +P        A+  
Sbjct: 451 QAAEAREAFFRTFPGIAAWHRRVGALSRRGDHEAITVTTAMGRRKTFPAGRFSFNAALNI 510

Query: 497 KLIGTACELVKKAWRAKHQGVLQL 520
            + GTA E  K A    H+ +  +
Sbjct: 511 PVQGTAAEGFKAAMIRLHRELPSI 534



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-----VQAISRDILCEGMKNATKN 620
           RR+     +GD   +   T+   R+    G+ + N      VQ  + +     M    + 
Sbjct: 471 RRVGALSRRGDHEAITVTTAMGRRKTFPAGRFSFNAALNIPVQGTAAEGFKAAMIRLHRE 530

Query: 621 GYDI----VLTVHDEIVSETPDTPYFSVGTLCS 649
              I    VL VHDE ++E P+        +  
Sbjct: 531 LPSIGGRGVLVVHDEYLAEVPEARAEEGKAMVE 563


>gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
 gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
          Length = 874

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 122/342 (35%), Gaps = 46/342 (13%)

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER------- 217
           RDV   +   + LI ++  E +       ++  G R+D   +   Q+ + +ER       
Sbjct: 113 RDVLRVKLASEELIEVAKIEFNATKATAQMSQNGVRLDTAWLKDKQQELEEERRGLESQV 172

Query: 218 -----KKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGIDLVDMSEGTLKSIL-SHSNI 270
                +KL ++  K+    + S+++    +    F   G+ L   ++  ++S+   H  +
Sbjct: 173 KDWLGEKLPDETDKIQLSDLTSTKKADKTQTLECFNRAGVPLESFNKNHIQSLTTEHPIL 232

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            Q  +   +N L  +      +  L   V  + ++  T     A+ TGR S      QN+
Sbjct: 233 NQFQRMRTVNDLIGNKG----IQGLLNVVDDENKVYPTWHQNSAA-TGRMSATKPAIQNI 287

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P        L + I    +GE                      +  V AD +  E R+LA
Sbjct: 288 P------ASLKRAIIPEQQGE--------------------EKQVFVRADYSQQELRILA 321

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            + G+     A+  G D +  T +     P ++++ E+R   K +     Y    +  ++
Sbjct: 322 QLTGDKTLTSAYQEGRDAHRLTASLMTGKPENQITSEERQRAKPVNFGKIYGQSPQGLQS 381

Query: 451 MASHCGLDLQQFSQNVK-STSTFEDWEQAESHHLWMQDQYPE 491
            A             +K   +  + +     H   ++  +  
Sbjct: 382 YAKVSYGVEFSIEDAMKFQAAMDKGYPSVARHEQQVRQDFKH 423


>gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis]
          Length = 1661

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/418 (15%), Positives = 130/418 (31%), Gaps = 87/418 (20%)

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
             + E     +   I   G   ++DL + +   +  +  +L+ +  K       S      
Sbjct: 1224 LNIELPAQYVVGNIESAGIGFNVDLCMAMSTCLKNKLNELEAEAAKEAGHRF-SLNSPKE 1282

Query: 241  LRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
            +   LF    +   D S+          +   +   +  LA+   L  +      +    
Sbjct: 1283 VSKVLFYELQLPPPDESKVSRRRFTSVKQYSTAKHVLENLAQLHPLPGIILEFRQLS--A 1340

Query: 294  TLSEAV------------------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             L+  +                  S+  R+ G   +Y A  TGR        Q +P+   
Sbjct: 1341 ALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYDWYTA--TGRLIMHEPNLQIVPK--- 1395

Query: 336  SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                             +  P G  +  +R   +AS G  L+ AD + +E R+LA ++ +
Sbjct: 1396 ----------------FLEIPNGNNTLHIREIFVASEGCTLLSADFSQLELRILAHLSND 1439

Query: 396  DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               IK      D++    AK  +     V++ QR   K +  AL Y       K++A+  
Sbjct: 1440 SKLIKILKEKIDVFTEIAAKMNSIDRSAVNEIQRNRAKQICYALIYGM---CPKSLAAEL 1496

Query: 456  GLDLQQFSQNVKSTSTF----------------------------EDWEQAESHHLWMQD 487
            G D +Q  Q   +                                  +    S     + 
Sbjct: 1497 GTDEEQAIQFYNNFKKLFPDVTRWLIETTEKCRSRGFCVTLANRVRYFAAIRSSATSDKL 1556

Query: 488  QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                 A+   + G+A ++ K A R       +++  L +      Q   + +  ++  
Sbjct: 1557 HAERQAINTTVQGSASDIFKIALR-------KVYLALDDYTKKNGQMNNAQTLAKIIF 1607


>gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa]
 gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa]
          Length = 1001

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 150/475 (31%), Gaps = 116/475 (24%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E    +L   I   G   D +    L   + Q+   ++     ++     +      +
Sbjct: 596 ELELQSVVLFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIPF-NFGSAAEI 654

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI-----LKLNTLS 296
              LF+   I   ++S G      +   + QLA +  +  L      I       L +L 
Sbjct: 655 SQILFVRLQIPPPNLSTG-RHYSTNKFVLQQLAPNYPIINLILEWRRISTALTTSLPSLL 713

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           ++  SDGR+R    F   S TGR        QN+ +    +                   
Sbjct: 714 KSCCSDGRIRT--NFITYSCTGRVLTENPNVQNVQKDGIID------------------- 752

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +RS  IA  G+ L+ +D   +E R+LA ++ +   I  F    D +     K 
Sbjct: 753 ----GFSIRSLFIAPKGRILLSSDYRQLEMRMLAHLSADSQLISLFLAEGDFFEIITNK- 807

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +NT      K  R   K +   + Y  G+    +++   G+  Q   Q +   S F+ + 
Sbjct: 808 WNTNETLPVKVDRNKVKQLCYGIIYGMGS---LSLSKELGIQKQHAQQMI--ISFFQQFP 862

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +                                        ++ W D             
Sbjct: 863 K----------------------------------------VRTWMD------------- 869

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                ++  V R        D  +     RR     +    S L T ++Q  R+      
Sbjct: 870 -----KILAVCRA-------DGFVSTLLGRRRFLPQI---NSMLQTESAQAERQA----- 909

Query: 597 LTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                +Q    ++    + N  KN       IV+ +HDE++ ET ++   SV  +
Sbjct: 910 -INTCIQGSVAELFKMALLNLQKNLLGTNSSIVMQMHDEVLVETDESSVASVVEI 963


>gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus]
          Length = 900

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 131/367 (35%), Gaps = 55/367 (14%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ D + +   ++    K+L+++   +             LR 
Sbjct: 429 ELPLIPILAVMESHNIQVNKDEMERTSAVLGSRLKELEQEAHFVAGEQF-LITSNNQLRE 487

Query: 244 YLFLITGI----DLVDMSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL----- 292
            LF    +        + +  L+  LS S   +  L     L ++      + K+     
Sbjct: 488 ILFGKLKLHLLRPRETLPKTGLQGHLSTSEAMLNVLQNFHPLPKIILEYRQVHKIKSTFV 547

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L   +   G +  T    G + TGR S      Q + +           IQ       
Sbjct: 548 DGLLACM-KKGSISSTWNQTG-TVTGRLSAKRPNIQGISKHP---------IQITKPQNF 596

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYV 410
                 + +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ 
Sbjct: 597 KGKEDDILTISPRTMFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFS 656

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           T  ++  + P + V+  +R   K +  ++ Y  G +    +A+  G+ +Q+ ++ ++   
Sbjct: 657 TLTSQWKDIPSECVTHVEREQTKKVVYSVVYGAGKER---LAACLGVTVQEAARFLEFLQ 713

Query: 471 TFEDW---------------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503
            ++                              +  +    ++ Q    AV   + G+A 
Sbjct: 714 KYKKIKDFAQATIARCHQTGYVASIMGRRRPLPRIRAQDQQLRAQAERQAVNFVVQGSAA 773

Query: 504 ELVKKAW 510
           +L K A 
Sbjct: 774 DLCKMAM 780


>gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera]
          Length = 2091

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/521 (14%), Positives = 149/521 (28%), Gaps = 134/521 (25%)

Query: 163  CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            C R V  TR L   L  L             E  L  +   +   G  +D++  ++ + +
Sbjct: 1602 CCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNV 1661

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEGTLKSILSHSNIT 271
            + ++ + L+++  +L             +   L+    + +    ++G          + 
Sbjct: 1662 LGKKLRHLEKEAYELAGMTFSLYT-AADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLD 1720

Query: 272  QLAKDLILNRLASSGSAILKLN--------TLSEAVSSDGR--LRGTLQFYGASRTGRWS 321
             L  +  +  +      + KL         +L+       R  L G      ++ TGR S
Sbjct: 1721 LLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHW-LQTSTATGRLS 1779

Query: 322  GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                  Q +       E + +        +             R   + S     L+ AD
Sbjct: 1780 MEEPNLQCV-------EHVVEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWLLLTAD 1832

Query: 381  LAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
             + IE R++A  + +    +  +    D++    AK    P   V  ++R   K +   +
Sbjct: 1833 YSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGI 1892

Query: 440  GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
             Y  GA    T+A      L +  + ++S                               
Sbjct: 1893 LYGMGA---NTLAKQLECSLGEAEEKIRS------------------------------- 1918

Query: 500  GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                      +R+   GV      L E  AC  ++G   + +        +     ++  
Sbjct: 1919 ----------FRSSFPGVAS---WLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKE-- 1963

Query: 560  IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618
              L + R+                                +I Q  + DI+   M N   
Sbjct: 1964 -KLKARRQA-----------------------------VNSICQGSAADIIKIAMINIHS 1993

Query: 619  ----------------------KNGYDIVLTVHDEIVSETP 637
                                  K    I+L VHDE+V E  
Sbjct: 1994 VIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVD 2034


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 133/427 (31%), Gaps = 84/427 (19%)

Query: 167  VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                  L++ L+PL+           E +   L   +   G   D      L +    E 
Sbjct: 646  AFVNIRLYEWLLPLATRLSSEKSVSLELESTELLARLEATGIAFDRQAGHDLLQRTKSEM 705

Query: 218  KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK----SILSHSNITQL 273
              L+ +  +L      +      +   LF+  GI  V    G+         +   + +L
Sbjct: 706  SSLEAEGRRLASMPF-NFDSPSEIANVLFVRMGIQPVSGCGGSGAPRRHYSTNKEVLQRL 764

Query: 274  AKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            A       +IL     + +    L  L  A  S+GR+  +      + TGR        Q
Sbjct: 765  APKHRIAAIILKWRKLNTALSSSLQNLLRACRSNGRIHASF--TTFTGTGRVQSVHPNVQ 822

Query: 329  NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            N+ +    +                       S  VRS  +A  G  LV AD + +E RV
Sbjct: 823  NVQKDALID-----------------------SLSVRSLFVAPPGFVLVSADYSQLELRV 859

Query: 389  LAWIAGEDWKIKAFANGEDIYVTT-----YAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
            LA ++ ++   K F NG D + T         + + P+D      R   K +  A+ Y  
Sbjct: 860  LAGLSKDEGLCKLFRNGGDFFQTVTDRWNANTSIDVPLD------RQKVKQLCYAIIYGM 913

Query: 444  GA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ---------------------A 478
            GA    +   T   +    ++ F +      ++ D                         
Sbjct: 914  GAITLGERIGTTKQNAQHLIESFFKEFPKVRSWMDATLESCRRDACAVTILGRRRPLKCG 973

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            ES     + +    A+   + G+A E+ K A     +      KDL       V +   +
Sbjct: 974  ESVVQSDRARAERQAINSTIQGSASEIFKSALLKLEKN----LKDLDARIVMQVHDEVIV 1029

Query: 539  SARRVAN 545
                   
Sbjct: 1030 ELNEACF 1036



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 551  MRRHKRDVHIVLPS-SRRLVYSDVKGDCSYL--NTATSQLMRERTYGGKLTENIVQAISR 607
              + +  +   L S  R      + G    L    +  Q  R R    +   + +Q  + 
Sbjct: 940  FPKVRSWMDATLESCRRDACAVTILGRRRPLKCGESVVQSDRARA-ERQAINSTIQGSAS 998

Query: 608  DILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651
            +I    +    KN       IV+ VHDE++ E  +  + + V  + S M
Sbjct: 999  EIFKSALLKLEKNLKDLDARIVMQVHDEVIVELNEACFSTAVERIESAM 1047


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 125/659 (18%), Positives = 224/659 (33%), Gaps = 144/659 (21%)

Query: 41  PVKLWDRTE--QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTS 97
           PV+  D  +  ++ +   L     DE++  V HN++F+  + ++  G D+    W   T+
Sbjct: 173 PVEHVDCEQLSRAYVLEGLAPVFNDESIGKVLHNAIFDIAMLRRH-GFDLKGVAWDTMTA 231

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKM--EEGKALIARFCKGSI-DSPPYDCTRANHVQ 154
           +                +    +   K          A F + +     P D        
Sbjct: 232 MHLLNENESDRALGGAGSFKLKDLAPKYLKTPADTFDALFGRNAQFKEVPLDIALV---- 287

Query: 155 AWQLFGEYCKRDVEATRELFK-------RLIPLSD----GERDLWLLDQTINDRGYRIDL 203
                  Y  +D E T +L++       ++  + D     E  L  +   +   GY +DL
Sbjct: 288 -------YAAKDTELTWKLYEFQRYHMAKIPTILDYYQTVEIPLLYVIVDLEANGYILDL 340

Query: 204 DLVLKLQELIAQERKKLDEDI-VKLT----DGIIRSSRQTYALRMYLFLITGIDLVDM-S 257
           D   +  E + +  ++L +++  +LT         +   T+ +R  L    G DL +M +
Sbjct: 341 DFAKEYGEKLHKRAEELRKELVAELTPFHEGDEPINLNSTHQMRPALSKAIGKDLSNMDA 400

Query: 258 EGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGAS 315
           + TLK +   +  I +L +   + +L     +   ++TL    +    R        G +
Sbjct: 401 KKTLKPLKDDYEIIAKLLEYKNIVKL-----SGTYIDTLPTKQNPTTERWHSRFNPMG-T 454

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR+S             + EE  TQ              +       R       GK 
Sbjct: 455 VTGRFSSG-----------KDEEDKTQQ----------GFNVQNQPPEARPMFGPPPGKL 493

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE-------Q 428
           LV AD    E R +A+++GE   I AF    D Y T  +  +  P ++V K        +
Sbjct: 494 LVGADFKAQEIRCVAYLSGEPVLINAFLEERDPYATMASNFYKRPHEEVYKNADGSDTKE 553

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   KV  LA  Y        ++A   G+  ++ ++                        
Sbjct: 554 RKKMKVAWLATLYGMSD---YSLADMLGVGKKEATEF----------------------- 587

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVVQEGGSISARRVA 544
                 K++L G+  +L   AW  +++  ++    +W DL        +     +     
Sbjct: 588 ------KEELFGSMPKL--SAWLKENEEFVRKNGYVWADLN-----ARKRRLPDAKLPRK 634

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           N+P       K              Y D +   S +N A  Q    R          VQ 
Sbjct: 635 NIPYGKWNDPK--------------YDDARKHNSRINRALRQATNAR----------VQG 670

Query: 605 ISRDILCEGMKNAT-----KNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSW 657
            S       M  A      K G+ +  TVHDE++ E P+   +     +  +M  +  W
Sbjct: 671 SSSIQTKVTMIKAHEYCANKPGWALWSTVHDELIFEVPEDFTWEEAQEIRDIMLNSYRW 729


>gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda
            melanoleuca]
          Length = 2634

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 120/423 (28%), Gaps = 87/423 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2121 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2179

Query: 243  MYLFLITGIDLVD-----MSEGTLKSI-----------------LSHSNITQLAKDLILN 280
              LFL   +          S+ TL S                   S   + +L     L 
Sbjct: 2180 EVLFLELKLPPNGEIKNQNSKKTLGSTRRGNDNGRKLKLGKQFSTSKDVLNKLKALHPLP 2239

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR----------TGRWSGCVFQPQNL 330
             L      I   N +++ V    R +    F G  R          TGR +      QN+
Sbjct: 2240 GLILEWRRIT--NAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRVTFTEPNIQNV 2297

Query: 331  PRQ-----------ERSEEILTQTIQALNRG----------------ETIADPLGLASDC 363
            PR                + L + +  +NRG                E  +D     S  
Sbjct: 2298 PRDFEIKMPTVVGESPPSQALGKGLLPMNRGKEKSCGINSGHQAQMEERASDRGMPFSVS 2357

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + 
Sbjct: 2358 MRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPES 2417

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED----- 474
            V  + R   K +   + Y  GAK                +  F       + F       
Sbjct: 2418 VGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINHFMRETVKN 2477

Query: 475  ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                  ++ + +      A+   + G+A ++VK A     + + 
Sbjct: 2478 CKRDGFVQTILGRRRYLPGINDNNPYHKAHAERQAINTTVQGSAADIVKVATVNIQKQLE 2537

Query: 519  QLW 521
               
Sbjct: 2538 TFH 2540


>gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus]
 gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus]
 gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus]
          Length = 2593

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 60/424 (14%), Positives = 116/424 (27%), Gaps = 88/424 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2079 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLAGHSF-SFTSSDDIA 2137

Query: 243  MYLFLITGIDLVDMSE-----GTLKSI-----------------LSHSNITQLAKDLILN 280
              LFL   +      +      TL S                   S   + +L     L 
Sbjct: 2138 EVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSKGVLNKLRALHPLP 2197

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR----------TGRWSGCVFQPQNL 330
             L      I   N +++ V    R +    F G  R          TGR +      QN+
Sbjct: 2198 GLILEWRRIT--NAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNV 2255

Query: 331  PRQ----------------------------ERSEEILTQTIQALNRGETIADPLGLASD 362
            PR                              R ++      +     E  +D     S 
Sbjct: 2256 PRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQTKVEERASDRGMPFSV 2315

Query: 363  CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      +
Sbjct: 2316 SMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPE 2375

Query: 423  KVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED---- 474
             V    R   K +   + Y  GAK                +  F       S F      
Sbjct: 2376 SVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGISHFMRETVK 2435

Query: 475  -----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                 + ++ + +      A+  ++ G+A ++VK A     + +
Sbjct: 2436 NCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTRVQGSAADIVKIATVNIQKQL 2495

Query: 518  LQLW 521
                
Sbjct: 2496 ETFH 2499


>gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens]
 gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta
 gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct]
          Length = 2590

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 61/464 (13%), Positives = 129/464 (27%), Gaps = 85/464 (18%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2076 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2134

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2135 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2194

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2195 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 2254

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2255 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2314

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2315 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2374

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2375 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2434

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2435 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2494

Query: 520  LWKDLTE-GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                    G    + +       R   +  +          + L
Sbjct: 2495 FHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQL 2538


>gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
          Length = 1154

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 61/464 (13%), Positives = 129/464 (27%), Gaps = 85/464 (18%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 642  VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 700

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 701  EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 760

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 761  GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 820

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 821  DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 880

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 881  RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 940

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 941  GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 1000

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 1001 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 1060

Query: 520  LWKDLTE-GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                    G    + +       R   +  +          + L
Sbjct: 1061 FHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQL 1104


>gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens]
          Length = 1762

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1248 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 1306

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 1307 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 1366

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1367 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 1426

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 1427 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 1486

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 1487 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 1546

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 1547 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 1606

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 1607 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 1666

Query: 520  LW 521
              
Sbjct: 1667 FH 1668


>gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
 gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
          Length = 2270

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1756 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 1814

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 1815 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 1874

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1875 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 1934

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 1935 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 1994

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 1995 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2054

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2055 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2114

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2115 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2174

Query: 520  LW 521
              
Sbjct: 2175 FH 2176


>gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens]
          Length = 2725

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2211 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2269

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2270 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2329

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2330 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 2389

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2390 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2449

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2450 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2509

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2510 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2569

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2570 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2629

Query: 520  LW 521
              
Sbjct: 2630 FH 2631


>gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens]
          Length = 2214

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1700 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 1758

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 1759 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 1818

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1819 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 1878

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 1879 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 1938

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 1939 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 1998

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 1999 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2058

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2059 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2118

Query: 520  LW 521
              
Sbjct: 2119 FH 2120


>gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
          Length = 2724

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2210 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2268

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2269 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2328

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2329 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 2388

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2389 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2448

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2449 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2508

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2509 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2568

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2569 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2628

Query: 520  LW 521
              
Sbjct: 2629 FH 2630


>gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens]
          Length = 2590

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2076 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2134

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2135 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2194

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2195 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 2254

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2255 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2314

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2315 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2374

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2375 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2434

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2435 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2494

Query: 520  LW 521
              
Sbjct: 2495 FH 2496


>gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens]
          Length = 1762

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1248 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 1306

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 1307 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 1366

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1367 GLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPR 1426

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 1427 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 1486

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 1487 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 1546

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 1547 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 1606

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 1607 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 1666

Query: 520  LW 521
              
Sbjct: 1667 FH 1668


>gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia
            guttata]
          Length = 2588

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/500 (14%), Positives = 141/500 (28%), Gaps = 93/500 (18%)

Query: 169  ATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
               +L K L         S  E         +   G           ++++  +  +++ 
Sbjct: 2052 VMDQLHKELQKENLTDVFSKVEMPTHYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIET 2111

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILN 280
               +L      S      +   LFL   +        +G  K++      T     + L+
Sbjct: 2112 KAYQLAGHSF-SLTSPDDIAEVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLS 2170

Query: 281  RLASSGSAILK----LNTLSEAVSSDGRL------------------------RGTLQFY 312
            +  S+   +L+    L+ L   +    R+                        R      
Sbjct: 2171 KQFSTTKDVLEKLKTLHPLPGLILEWRRINNAITKVVYPLQREKRLNSALGMERIYPISQ 2230

Query: 313  GASRTGRWSGCVFQPQNLPRQERSEEIL------------------TQTIQALNRGETIA 354
              + TGR S      QN+PR    E                         +   R   + 
Sbjct: 2231 THTATGRVSFTEPNIQNVPRDFEIEMPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILP 2290

Query: 355  DPLGLASDCV------------RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            + L + +  +            R   +   G  ++ AD + +E R+LA ++ +   I+A 
Sbjct: 2291 NGLKVQAANISEERGIQFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQAL 2350

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLD 458
              G D++ +  A+      + V +  R   K +   + Y  GAK                
Sbjct: 2351 NGGTDVFKSIAAEWKMIDPEAVGERTRQQAKQICYGIIYGIGAKSLGEQMGIDENEAANY 2410

Query: 459  LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497
            ++ F         F                           +  + + +      AV   
Sbjct: 2411 IESFKSRYTGVQKFLRETVRSCRRDGFVQTILGRRRYLPAIKDPNPYSKAHAERQAVNTT 2470

Query: 498  LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
            + G+A ++VK A     Q  L+ +  + +    +          R++      M    R 
Sbjct: 2471 VQGSAADIVKTATVN-IQKRLEAFPSVFKSHGHLESSFQRDKTGRLSRKRNTGMLHPIRG 2529

Query: 558  VHIVLPSSRRLVYSDVKGDC 577
               +L     L+Y   + D 
Sbjct: 2530 GFFILQLHDELLYEVAEDDV 2549


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 182/562 (32%), Gaps = 88/562 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           +  L +D ET     L   G++       I L  +     P + W              +
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  QYLRDETVMC-VAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLA 115
             L+   V   V HN+ F+  + ++TLG+ +     +   T + +     P + K     
Sbjct: 84  TALQ--KVEKFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKEGGTG 140

Query: 116 LNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVE 168
               E           EE KA +AR  K    +        +     ++L+      D  
Sbjct: 141 HKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AGMDTI 197

Query: 169 ATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
               L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +  
Sbjct: 198 LVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHY 257

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
                      + S   T  L   L   TG+ +   +    + + +        +   L 
Sbjct: 258 TAVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALA 314

Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           + A                  E   ++ R+   +    A RTGR S      QNLP    
Sbjct: 315 KAAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLP---- 369

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR C +A  G+ +   D    E RVLA ++G+
Sbjct: 370 -----------------------SGDWMVRRCFLADPGQIIASVDYRAQELRVLAALSGD 406

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF    D++  T   A            R IGK+    + Y GGA     +A++ 
Sbjct: 407 QTMLRAFKEESDLHQVTADAA-GVD--------RKIGKMANFLVCYGGGAG---KLATNA 454

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL-VKKAWRAKH 514
           G+   +  + ++  +T   +   ++ +  MQ +           G    +   +A+ A +
Sbjct: 455 GITFPEAKKVLEVFAT--TYPGVDTLNKRMQQEAGSAGFITTPTGRRLPVDPDRAYSALN 512

Query: 515 QGVLQLWKDLTEGFACVVQEGG 536
             +    +D+T      + E G
Sbjct: 513 YLIQSSSRDVTGAAVLRLHEAG 534



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 22/130 (16%)

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
           A  V E  + +   V  + + + +       I  P+ RRL   D     S LN       
Sbjct: 461 AKKVLEVFATTYPGVDTLNKRMQQEAGSAGFITTPTGRRLP-VDPDRAYSALNY------ 513

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETPD-TPYFSVG 645
                       ++Q+ SRD+    +    + G+   +   VHDE++   P+     +V 
Sbjct: 514 ------------LIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSLPEADAEAAVK 561

Query: 646 TLCSLMTKNP 655
            +  +M +  
Sbjct: 562 EVGQIMEQRI 571


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 86/263 (32%), Gaps = 37/263 (14%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           L       G + TGR S      QNLPR   +  +     +     + +           
Sbjct: 631 LHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITAAVAGNDAEEDGDDDLLG---------F 680

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R C +A+ G  L+  D   IE RVLA + G+   ++A     DI+       F      V
Sbjct: 681 RRCFVAAGGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--V 738

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMAS--------------HCGLDLQQFSQNVKSTS 470
           S E+R++ K +   + Y  G K   T                 +    +  + + V   +
Sbjct: 739 STEERSLAKRVVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVVEEA 798

Query: 471 TFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               +               S  L  +      A    + G+A +++K A  A  + VLQ
Sbjct: 799 RANGFVRTLSGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQ 858

Query: 520 LWKDLTEGFACVVQEGGSISARR 542
            +          + +      R+
Sbjct: 859 RYDRSDVSLLSQIHDEMVFMVRK 881


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 182/561 (32%), Gaps = 86/561 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           +  L +D ET         G+  Y +   I L  +     P + W               
Sbjct: 35  LRILGLDTET--------TGLNIYQDDFGIRLIQF---GNPWESWVLPVERGGVFVGAAA 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLAL 116
             L+ +    V HN+ F+  + ++TLG+ +     +   T + +     P + K      
Sbjct: 84  TALQ-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKEGGTGH 141

Query: 117 NFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
              E           EE KA +AR  K    +        +     ++L+      D   
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AGMDTIL 198

Query: 170 TRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
              L  ++ PL           E  L  +   +   G+ +D+D   KL E + ++ +   
Sbjct: 199 VSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDMLRKAEHYT 258

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                     + S   T  L   L   TG+ +   +    + + +        +   L +
Sbjct: 259 AVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATNKRQVNAELLEALAEEGNALAK 315

Query: 282 LASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            A                  E   ++ R+   +    A RTGR S      QNLP     
Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLP----- 369

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +   D    E RVLA ++G+ 
Sbjct: 370 ----------------------SGDWMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQ 407

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AF    D++  T   A            R IGK+    + Y GGA     +A++ G
Sbjct: 408 TMLRAFEEESDLHQVTADAA-GVD--------RKIGKMANFLVCYGGGAG---KLATNAG 455

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL-VKKAWRAKHQ 515
           +   +  + ++  +T   +   ++ +  MQ +           G    +   +A+ A + 
Sbjct: 456 ITFPEAKKVLEVFAT--TYPGVDTLNKRMQQEAGSAGFITTPTGRRLPVDPDRAYSALNY 513

Query: 516 GVLQLWKDLTEGFACVVQEGG 536
            +    +D+T      + E G
Sbjct: 514 LIQSSSRDVTGAAVLRLHEAG 534



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 22/130 (16%)

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
           A  V E  + +   V  + + + +       I  P+ RRL   D     S LN       
Sbjct: 461 AKKVLEVFATTYPGVDTLNKRMQQEAGSAGFITTPTGRRLP-VDPDRAYSALNY------ 513

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETPD-TPYFSVG 645
                       ++Q+ SRD+    +    + G+   +   VHDE++   P+     +V 
Sbjct: 514 ------------LIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSLPEADAEAAVK 561

Query: 646 TLCSLMTKNP 655
            +  +M +  
Sbjct: 562 EVGQIMEQRI 571


>gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
 gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 127/411 (30%), Gaps = 71/411 (17%)

Query: 173 LFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           + + L+P L + E  +  +   +  RG     + + + +    +  + L+     +T+  
Sbjct: 64  IDRDLLPSLENIEAPVQSILAAMECRGVAFYPNHLKRNEAQANERIEALEAQARTITNDS 123

Query: 232 IRSSRQTYALRMYLFLITGIDLVDM--SEGTLKSILSHSNITQLAK----------DLIL 279
                    +  YL+ I  + +      +   +   S   +  L            D+IL
Sbjct: 124 SFLLSSPQQISNYLYDILKMKVPSGLVQKTKSQRSTSEETLQALKAASNGSPHPIIDVIL 183

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                +      +  L        R+        A RTGR S      Q +P+ +     
Sbjct: 184 EFRTLNKLLTTYIKPLPTFCLPQ-RIHPQWSEC-AVRTGRLSCRQPNLQQVPKDD----- 236

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAWIAGEDW 397
                                   VR   + S  +   L   D +  E R+LA ++G+  
Sbjct: 237 ---------------------GASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGDKA 275

Query: 398 KIKAFA--NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
            I  F      DIY    +   N P++ ++ ++RA  K + LAL Y       AK     
Sbjct: 276 LISLFQMDANVDIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPNQVAKKLNIT 335

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYP 490
            S     +  F +  +    + +  +  +                          + Q  
Sbjct: 336 KSQAIQMMNDFFRRFQGVKNWMEDTKEFARRNHYVVTIAGRRRYLDGIDSDDNGAKAQAE 395

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
             A+   + G+A +L+K +     +  LQ W++         +    +   
Sbjct: 396 RQAINTVIQGSAADLMKCSMINIAEN-LQRWQEDNSSNGTSSRPRILLQIH 445


>gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes]
          Length = 2499

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1985 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2043

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2044 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2103

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2104 GLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNVPR 2163

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2164 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2223

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2224 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2283

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2284 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2343

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2344 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2403

Query: 520  LW 521
              
Sbjct: 2404 FH 2405


>gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes]
          Length = 2500

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1986 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2044

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2045 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2104

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2105 GLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNVPR 2164

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2165 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2224

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2225 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2284

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2285 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2344

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2345 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2404

Query: 520  LW 521
              
Sbjct: 2405 FH 2406


>gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes]
          Length = 1762

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1248 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 1306

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 1307 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 1366

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1367 GLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNVPR 1426

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 1427 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 1486

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 1487 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 1546

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 1547 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 1606

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 1607 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 1666

Query: 520  LW 521
              
Sbjct: 1667 FH 1668


>gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes]
          Length = 2596

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2082 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2140

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2141 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2200

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2201 GLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNVPR 2260

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2261 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2320

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2321 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2380

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2381 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2440

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2441 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2500

Query: 520  LW 521
              
Sbjct: 2501 FH 2502


>gi|114588752|ref|XP_001165150.1| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes]
          Length = 2730

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 121/422 (28%), Gaps = 84/422 (19%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2216 VEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2274

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTLS 296
              LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L 
Sbjct: 2275 EVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2334

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2335 GLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNVPR 2394

Query: 333  Q-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDCV 364
                            + + + +  + RG                 E  AD     S  +
Sbjct: 2395 DFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISM 2454

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + V
Sbjct: 2455 RHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESV 2514

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------- 473
              + R   K +   + Y  GAK                +  F       + F        
Sbjct: 2515 GDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNC 2574

Query: 474  --------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                               + ++ + +      A+   + G+A ++VK A     + +  
Sbjct: 2575 KRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLET 2634

Query: 520  LW 521
              
Sbjct: 2635 FH 2636


>gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus]
          Length = 2273

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 83/412 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S      + 
Sbjct: 1760 VEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSF-SFTSADDIA 1818

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLS 296
              LFL   +       ++G+ K++ S     +  + + L R  S+   IL     L+ L 
Sbjct: 1819 QVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLP 1878

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1879 GLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTEPNIQNVPR 1938

Query: 333  QER------------SEEILTQTIQALN---------------RGETIADPLGLASDCVR 365
                           S+    +   A+                  E  +D     S  +R
Sbjct: 1939 DFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMR 1998

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      D V 
Sbjct: 1999 HAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVG 2058

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F    K  + F         
Sbjct: 2059 DDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCR 2118

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                              +  + + +      A+   + G+A ++VK A   
Sbjct: 2119 KNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2170


>gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus]
          Length = 2398

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 83/412 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S      + 
Sbjct: 1885 VEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSF-SFTSADDIA 1943

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLS 296
              LFL   +       ++G+ K++ S     +  + + L R  S+   IL     L+ L 
Sbjct: 1944 QVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLP 2003

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2004 GLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTEPNIQNVPR 2063

Query: 333  QER------------SEEILTQTIQALN---------------RGETIADPLGLASDCVR 365
                           S+    +   A+                  E  +D     S  +R
Sbjct: 2064 DFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMR 2123

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      D V 
Sbjct: 2124 HAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVG 2183

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F    K  + F         
Sbjct: 2184 DDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCR 2243

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                              +  + + +      A+   + G+A ++VK A   
Sbjct: 2244 KNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2295


>gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus]
          Length = 2119

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 83/412 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S      + 
Sbjct: 1606 VEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSF-SFTSADDIA 1664

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLS 296
              LFL   +       ++G+ K++ S     +  + + L R  S+   IL     L+ L 
Sbjct: 1665 QVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLP 1724

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1725 GLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTEPNIQNVPR 1784

Query: 333  QER------------SEEILTQTIQALN---------------RGETIADPLGLASDCVR 365
                           S+    +   A+                  E  +D     S  +R
Sbjct: 1785 DFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMR 1844

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      D V 
Sbjct: 1845 HAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVG 1904

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F    K  + F         
Sbjct: 1905 DDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCR 1964

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                              +  + + +      A+   + G+A ++VK A   
Sbjct: 1965 KNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2016


>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
          Length = 2587

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 83/412 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S      + 
Sbjct: 2074 VEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSF-SFTSADDIA 2132

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLS 296
              LFL   +       ++G+ K++ S     +  + + L R  S+   IL     L+ L 
Sbjct: 2133 QVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLP 2192

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2193 GLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTEPNIQNVPR 2252

Query: 333  QER------------SEEILTQTIQALN---------------RGETIADPLGLASDCVR 365
                           S+    +   A+                  E  +D     S  +R
Sbjct: 2253 DFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMR 2312

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      D V 
Sbjct: 2313 HAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVG 2372

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F    K  + F         
Sbjct: 2373 DDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCR 2432

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                              +  + + +      A+   + G+A ++VK A   
Sbjct: 2433 KNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2484


>gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus]
 gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus]
          Length = 2265

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 83/412 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S      + 
Sbjct: 1752 VEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSF-SFTSADDIA 1810

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLS 296
              LFL   +       ++G+ K++ S     +  + + L R  S+   IL     L+ L 
Sbjct: 1811 QVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLP 1870

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 1871 GLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTEPNIQNVPR 1930

Query: 333  QER------------SEEILTQTIQALN---------------RGETIADPLGLASDCVR 365
                           S+    +   A+                  E  +D     S  +R
Sbjct: 1931 DFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMR 1990

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      D V 
Sbjct: 1991 HAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVG 2050

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F    K  + F         
Sbjct: 2051 DDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCR 2110

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                              +  + + +      A+   + G+A ++VK A   
Sbjct: 2111 KNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2162


>gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus]
 gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
 gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus]
 gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus]
 gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus]
          Length = 2544

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 83/412 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S      + 
Sbjct: 2031 VEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSF-SFTSADDIA 2089

Query: 243  MYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLS 296
              LFL   +       ++G+ K++ S     +  + + L R  S+   IL     L+ L 
Sbjct: 2090 QVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLP 2149

Query: 297  EAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +    R+                        R        + TGR +      QN+PR
Sbjct: 2150 GLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTEPNIQNVPR 2209

Query: 333  QER------------SEEILTQTIQALN---------------RGETIADPLGLASDCVR 365
                           S+    +   A+                  E  +D     S  +R
Sbjct: 2210 DFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMR 2269

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      D V 
Sbjct: 2270 HAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVG 2329

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED------- 474
             + R   K +   + Y  GAK                +  F    K  + F         
Sbjct: 2330 DDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCR 2389

Query: 475  --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                              +  + + +      A+   + G+A ++VK A   
Sbjct: 2390 KNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2441


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 89/544 (16%), Positives = 176/544 (32%), Gaps = 127/544 (23%)

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           L YL + ++ C+ HN  F+  +     G  I +  W  T        +   + N      
Sbjct: 142 LPYLANGSLKCINHNIKFDDKVVTFQWGQRIANV-WWDT-------NIAGWVLNENEKHG 193

Query: 118 FSEHLTKM---EEGKALI--ARFCKGSIDSPPYDC----TRANHVQAWQLF---GEYCKR 165
                 K     EG        F     +  P D        +  + W L+    +Y + 
Sbjct: 194 LKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLRE 253

Query: 166 DVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE-- 222
           D    R  +++L  +  D E  L  +   +  RG  I  D   +L      E  + ++  
Sbjct: 254 DHP--RADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLC 311

Query: 223 ---------------DIVKLTDG----IIRSSRQTYALRMYLFLITGI---DLVDMSEGT 260
                           +++LT G       S +Q   L   +F +  +   +     +  
Sbjct: 312 DEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDKI 371

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAIL--------KLNTLSEAVSSDGR-LRGTLQF 311
           ++   + +      K     +   +              ++ + E   +    +  T   
Sbjct: 372 VQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGNLLGTYIDKIPEVKCAKTNAVHTTYNQ 431

Query: 312 YGASRTGRWSGCV----FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           YGA +TGR+S          QN+P  E+S                           +R  
Sbjct: 432 YGA-KTGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKI 463

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--- 424
             A +G K V  D + IE RVL++++G++   +A+  G+D+Y    +K +  P +     
Sbjct: 464 FRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDCREF 523

Query: 425 ---------SKEQRAIGKVMELALGYQGGAKVFKTM---------------------ASH 454
                     K +R   K + L + Y+ GAK                             
Sbjct: 524 YPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAIGEQFDRSAEWAQKLIDDFYKSFPKIQQ 583

Query: 455 CGLDLQQFSQNVKSTSTFEDWE------QAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             L +++ ++     +T +  +      Q   H  +   +    ++   + G++ +++K 
Sbjct: 584 LRLKVEKMAEEYGYVTTIQGRKRRLPEMQLPDHDDYRYQEAHRQSLNAVIQGSSADIMKL 643

Query: 509 AWRA 512
           A  A
Sbjct: 644 AMIA 647


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 85/263 (32%), Gaps = 37/263 (14%)

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            L       G + TGR S      QNLPR   +  +     +     + +           
Sbjct: 958  LHPNFLQEG-TDTGRLSCVEPNLQNLPRNGIAAAVAGNDAEEDGEEDLLG---------F 1007

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R C +A+ G  L+  D   IE RVLA + G+   + A     DI+       F      V
Sbjct: 1008 RRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--V 1065

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS--------------HCGLDLQQFSQNVKSTS 470
            S E+R++ K +   + Y  G K   T                 +    +  + + V   +
Sbjct: 1066 STEERSLAKRVVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEA 1125

Query: 471  TFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                +               S  L  +      A    + G+A +++K A  A  + VLQ
Sbjct: 1126 RANGFVRTLSGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQ 1185

Query: 520  LWKDLTEGFACVVQEGGSISARR 542
             +          + +      R+
Sbjct: 1186 RYDRSDVSLLSQIHDEMVFMVRK 1208



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 79/527 (14%), Positives = 151/527 (28%), Gaps = 98/527 (18%)

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGI 231
            L      E+ + LL   +   G R+DL  V + Q+    E  +  +   KL      D  
Sbjct: 705  LQAFLRQEKRIALLLALLKYNGMRVDLHEVHRYQKSCEAEMARQRQLASKLVPELGEDFN 764

Query: 232  IRSSRQ-------TYALRMYLFLITGIDLVDMSEGTLKS----ILSHSNITQLAKDLILN 280
            I+S  Q          L  YL      + V  +  T+        +   +  LA+     
Sbjct: 765  IQSHDQCRRALYEVLQLGKYLLKSGNGEAVGATGLTITKGGRLSTAEDTLRALARHHEFP 824

Query: 281  RLASSGSAILKL-NTLSEAVSSDGRLRGTLQFYGA-------SRTGRWSGCVFQPQNLPR 332
                    + KL  T  E +     +  + Q   A       + TG       Q Q    
Sbjct: 825  ACLLRYRKVSKLMQTYIEGMMGYAVVHSSAQASPAPCLDSVNAETGASESTKGQQQAHGN 884

Query: 333  QE----RSEEILTQTIQALNRGETI-----------------ADPLGLASDCVRSCIIAS 371
             E     S   + + +        +                   P               
Sbjct: 885  DEGAKAVSPLFIREAVDVNGDSPFVDRQLHTSSSGYSAGSAEPMPARNQRSSREEASATP 944

Query: 372  NGKKLVVA-DLAGIEARVLAWIAG-------EDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
             G+ ++ A   A +    L            E        NG        A       ++
Sbjct: 945  AGEVILPARGYATLHPNFLQEGTDTGRLSCVEPNLQNLPRNGI------AAAVAGNDAEE 998

Query: 424  VSKEQ----RA----IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
              +E     R      G  + L++ Y+      + +A  CG      +  V + +T  D 
Sbjct: 999  DGEEDLLGFRRCFVATGGCVLLSIDYEQI--ELRVLAHLCGD-----AALVDALTTSADI 1051

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
             +A +  ++ +       V  +    A  +V           L     +T   A  +   
Sbjct: 1052 HRAIAEVVFKKKP-----VSTEERSLAKRVVFGVLYGAGPKTLATHMGVTVDRALHITSL 1106

Query: 536  GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             + +   +    R V+   + +  +   S R     D++             +  R+Y  
Sbjct: 1107 LTNAFPGIDAYHRRVIEEARANGFVRTLSGRLRYLPDIRSTV----------LSRRSYAE 1156

Query: 596  KLTEN-IVQAISRDILCEGM--------KNATKNGYDIVLTVHDEIV 633
            +   N +VQ  + D++   M        +   ++   ++  +HDE+V
Sbjct: 1157 RQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMV 1203


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 85/263 (32%), Gaps = 37/263 (14%)

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            L       G + TGR S      QNLPR   +  +     +     + +           
Sbjct: 958  LHPNFLQEG-TDTGRLSCVEPNLQNLPRNGIAAAVAGNDAEEDGEEDLLG---------F 1007

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R C +A+ G  L+  D   IE RVLA + G+   + A     DI+       F      V
Sbjct: 1008 RRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--V 1065

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMAS--------------HCGLDLQQFSQNVKSTS 470
            S E+R++ K +   + Y  G K   T                 +    +  + + V   +
Sbjct: 1066 STEERSLAKRVVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEA 1125

Query: 471  TFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                +               S  L  +      A    + G+A +++K A  A  + VLQ
Sbjct: 1126 RANGFVRTLSGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQ 1185

Query: 520  LWKDLTEGFACVVQEGGSISARR 542
             +          + +      R+
Sbjct: 1186 RYDRSDVSLLSQIHDEMVFMVRK 1208



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 79/527 (14%), Positives = 151/527 (28%), Gaps = 98/527 (18%)

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGI 231
            L      E+ + LL   +   G R+DL  V + Q+    E  +  +   KL      D  
Sbjct: 705  LQAFLRQEKRIALLLALLKYNGMRVDLHEVHRYQKSCEAEMARQRQLASKLVPELGEDFN 764

Query: 232  IRSSRQ-------TYALRMYLFLITGIDLVDMSEGTLKS----ILSHSNITQLAKDLILN 280
            I+S  Q          L  YL      + V  +  T+        +   +  LA+     
Sbjct: 765  IQSHDQCRRALYEVLQLGKYLLKSGNGEAVGATGLTITKGGRLSTAEDTLRALARHHEFP 824

Query: 281  RLASSGSAILKL-NTLSEAVSSDGRLRGTLQFYGA-------SRTGRWSGCVFQPQNLPR 332
                    + KL  T  E +     +  + Q   A       + TG       Q Q    
Sbjct: 825  ACLLRYRKVSKLMQTYIEGMMGYAVVHSSAQASPAPCLDSVNAETGASESTKGQQQAHGN 884

Query: 333  QE----RSEEILTQTIQALNRGETI-----------------ADPLGLASDCVRSCIIAS 371
             E     S   + + +        +                   P               
Sbjct: 885  DEGAKAVSPLFIREAVDVNGDSPFVDRQLHTSSSGYSAGSAEPMPARNQRSSREEASATP 944

Query: 372  NGKKLVVA-DLAGIEARVLAWIAG-------EDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
             G+ ++ A   A +    L            E        NG        A       ++
Sbjct: 945  AGEVILPARGYATLHPNFLQEGTDTGRLSCVEPNLQNLPRNGI------AAAVAGNDAEE 998

Query: 424  VSKEQ----RA----IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
              +E     R      G  + L++ Y+      + +A  CG      +  V + +T  D 
Sbjct: 999  DGEEDLLGFRRCFVATGGCVLLSIDYEQI--ELRVLAHLCGD-----AALVDALTTSADI 1051

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
             +A +  ++ +       V  +    A  +V           L     +T   A  +   
Sbjct: 1052 HRAIAEVVFKKKP-----VSTEERSLAKRVVFGVLYGAGPKTLATHMGVTVDRALHITSL 1106

Query: 536  GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             + +   +    R V+   + +  +   S R     D++             +  R+Y  
Sbjct: 1107 LTNAFPGIDAYHRRVIEEARANGFVRTLSGRLRYLPDIRSTV----------LSRRSYAE 1156

Query: 596  KLTEN-IVQAISRDILCEGM--------KNATKNGYDIVLTVHDEIV 633
            +   N +VQ  + D++   M        +   ++   ++  +HDE+V
Sbjct: 1157 RQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMV 1203


>gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
 gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
          Length = 489

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 139/425 (32%), Gaps = 86/425 (20%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            + E  +  +   +   G   +  +    + LI ++ + LD     L  G   S      
Sbjct: 22  LNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYLDYKAHVLLPGKTFSLSSGDN 81

Query: 241 LRMYLFLITGIDLVDMSEGTLKS--------ILSHSNITQLAKDLILNRLASSGSAIL-- 290
           +   LF    I   ++++ T +         + +   + Q+     L  + S    +   
Sbjct: 82  VSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQINHYHPLPSIISEYRVLTHH 141

Query: 291 ---------KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL---------PR 332
                    K    S+    D R+  T+Q      TGR +      QN+         P 
Sbjct: 142 ISHYIDVLGKYLFRSDHYQMD-RIYSTIQQTIVP-TGRIAMENPNLQNISHPIDFKRAPE 199

Query: 333 QERSEEILTQTIQALNRGETIADP-----------LGLASDCVRSCIIASNGKKLVVADL 381
            + S+E +    ++L+R E ++D              + +  +R+  I +NG KL+  D 
Sbjct: 200 IDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITVSIRNAFIPANGCKLLSVDY 259

Query: 382 AGIEARVLAWIAGEDWKIKA--FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
             +E R+L  ++ +   ++        DI+     +  N P D V+   R   K +   +
Sbjct: 260 GQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIPYDSVTDSDRQQAKHLVYGI 319

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNV--------KSTSTFEDWEQAESHHLWMQDQY-- 489
            Y  G K     AS   + ++Q    +        K     E  E+    + ++   +  
Sbjct: 320 LYGMGIKSI---ASELHIPIEQARGKLENFKKTYNKLIEYLEMVEENVIQNGYIATLFGR 376

Query: 490 --------------------PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQ 519
                                  A      GTA ++ K A             K Q +LQ
Sbjct: 377 VRNFSNIHSCKIDNNEISKVKRAARNSIPQGTAADIAKMAMIKIQDELDKNHFKAQMILQ 436

Query: 520 LWKDL 524
           L  ++
Sbjct: 437 LHDEI 441



 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 21/80 (26%)

Query: 599 ENIVQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETPDTP--------YFSV 644
            +I Q  + DI    M        KN +   ++L +HDEI+ E P+           +S+
Sbjct: 402 NSIPQGTAADIAKMAMIKIQDELDKNHFKAQMILQLHDEILFEVPENELYQSAQIIKYSM 461

Query: 645 GTLCSL-------MTKNPSW 657
             +  L       M+  P+W
Sbjct: 462 ENVVKLSVSLPIKMSIGPNW 481


>gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
 gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
          Length = 917

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/528 (14%), Positives = 164/528 (31%), Gaps = 74/528 (14%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL---------ARTNG 104
              +   ++ ++V  +  N   +    K         +R+     +         +    
Sbjct: 317 WEKITDIMQQKSVQKMTWNLKIQIQALKSPYISCQRLERFHLDHKMLDKVEVLDNSYVLL 376

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
            P S+ N       +  L   EE + +  + +F K  + S        +     Q+    
Sbjct: 377 SPVSVYNGLDICLLAWVLWPDEESRTVPNLEKFVKRRLHSEAAAAANRDGRWRNQMHKAA 436

Query: 163 ---CKRDVEATRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQ 210
              C R    TR L+  L  L            E  L  +   +   G   D+D  L  +
Sbjct: 437 HNGCCRRSAQTRALYTVLKKLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHAR 496

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSN 269
            +I ++ K+L+++  +L      S   T  +   L++   + +     +G L       +
Sbjct: 497 HIITKKLKELEKEAYRLAGKNF-SLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQS 555

Query: 270 ITQLAKDLILNRLASSGSAILKL-NTLSEAVSSDGRLRGTLQ--------FYGASRTGRW 320
           +  L     +  +      + KL N    ++ S  +L    Q           ++ TGR 
Sbjct: 556 LDHLRDQHPIIPVIKEHRTLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQTSTATGRL 615

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      Q +        +   T ++        D        VR   I        V A
Sbjct: 616 SMEEPNLQCV-----EHLVEFDTGKSNKDYCMSVD--DHHKINVRDFFIPTKENWLFVTA 668

Query: 380 DLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           D + IE R++A  + +   ++  +    D++    ++  +     +S ++R   K +   
Sbjct: 669 DYSQIELRLMAHFSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYG 728

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF-------------------------- 472
           + Y  GA    ++A       +  +Q ++S                              
Sbjct: 729 ILYGMGA---NSLAEQLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLG 785

Query: 473 --EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                 +  + +   + +    AV     G+A +++K A    H  + 
Sbjct: 786 RRRFLTKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIRLHSVIT 833



 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 25/145 (17%)

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           +  +   +         E  +  A +     R +       +H V+ S R+  Y +   G
Sbjct: 726 IYGILYGMGANSLAEQLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLG 785

Query: 576 DCSYLNTATSQLMRERTYGGK-LTENIVQAISRDILCEGMKNATKN-------------- 620
              +L   T+   +E+    +    +I Q  + DI+   M                    
Sbjct: 786 RRRFLTKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIRLHSVITNRTRATDSTDEV 845

Query: 621 ---------GYDIVLTVHDEIVSET 636
                       ++L VHDE+V E 
Sbjct: 846 TRKFSEFGGQCHLILQVHDELVLEV 870


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 89/544 (16%), Positives = 176/544 (32%), Gaps = 127/544 (23%)

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           L YL + ++ C+ HN  F+  +     G  I +  W  T        +   + N      
Sbjct: 142 LPYLANGSLKCINHNIKFDDKVVTFQWGQRIANV-WWDT-------NIAGWVLNENEKHR 193

Query: 118 FSEHLTKM---EEGKALI--ARFCKGSIDSPPYDC----TRANHVQAWQLF---GEYCKR 165
                 K     EG        F     +  P D        +  + W L+    +Y + 
Sbjct: 194 LKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLRE 253

Query: 166 DVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE-- 222
           D    R  +++L  +  D E  L  +   +  RG  I  D   +L      E  + ++  
Sbjct: 254 DHP--RADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLC 311

Query: 223 ---------------DIVKLTDG----IIRSSRQTYALRMYLFLITGI---DLVDMSEGT 260
                           +++LT G       S +Q   L   +F +  +   +     +  
Sbjct: 312 DEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDKI 371

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAIL--------KLNTLSEAVSSDGR-LRGTLQF 311
           ++   + +      K     +   +              ++ + E   +    +  T   
Sbjct: 372 VQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGKLLGTYIDKIPEVKCAKTNAVHTTYNQ 431

Query: 312 YGASRTGRWSGCV----FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           YGA +TGR+S          QN+P  E+S                           +R  
Sbjct: 432 YGA-KTGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKI 463

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--- 424
             A +G K V  D + IE RVL++++G++   +A+  G+D+Y    +K +  P +     
Sbjct: 464 FRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDCREF 523

Query: 425 ---------SKEQRAIGKVMELALGYQGGAKVFKTM---------------------ASH 454
                     K +R   K + L + Y+ GAK                             
Sbjct: 524 YPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAIGEQFDKSAEWAQKLIDDFYKSFPKIQQ 583

Query: 455 CGLDLQQFSQNVKSTSTFEDWE------QAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             L +++ ++     +T +  +      Q   H  +   +    ++   + G++ +++K 
Sbjct: 584 LRLKVEKMAEEYGYVTTIQGRKRRLPEMQLPDHDDYRYQEAHRQSLNAVIQGSSADIMKL 643

Query: 509 AWRA 512
           A  A
Sbjct: 644 AMIA 647


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 89/504 (17%), Positives = 167/504 (33%), Gaps = 83/504 (16%)

Query: 63   DETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSSLKNAC 113
            DE V+ +A      F + +    +     S  W    + +          GL S +++ C
Sbjct: 1170 DEDVIQIAFCIKDQF-KWMLNSGVHGVTTSNNWQDPMIASWLMDPDNIKQGLFSLVEHYC 1228

Query: 114  LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                +    TK +      +     S +      + A+++   QL  +           +
Sbjct: 1229 SEHLYLFQDTKYDWDVNRPSY-TSVSSEKVCCVESIASYILMLQLEEQLSG------MNM 1281

Query: 174  FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GI 231
            ++     +  E         +   G  +D  L+ + +  +      L E   K+      
Sbjct: 1282 WQHF---TGVEMPHMYCVALLELNGIEVDNSLLKRYRLELHSASLALQEKAWKILGRKFN 1338

Query: 232  IRSSRQT-----YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
            + + ++        LR+                    I+S   +      +IL       
Sbjct: 1339 LSNPKEVSKVLFQELRLXXXXXXXXXXXXXXXXXYPCIMSWRTVNYALNKVILL------ 1392

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 +N+L  +    GRL    +    + TGR        Q++P+Q    +        
Sbjct: 1393 -----INSLPPSC---GRLHH--KCLTLTNTGRMIMSEPNIQSIPKQFSITKGSKSEAD- 1441

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-NG 405
                          S C+R+  +A NGK L+ AD + IE R+LA ++G++  I AF  +G
Sbjct: 1442 -----------SEQSFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSG 1490

Query: 406  EDIYVTTYAKAFNT--PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             DI+ +  A  ++    ID V+ +QR   K     + Y  GA+      +    D Q   
Sbjct: 1491 VDIFKSIAAMFYSEISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTSETDAQNAM 1550

Query: 464  Q------------------------NVKSTSTFEDW-EQAESHHLWMQDQYPEFAVKDKL 498
                                      +++ S    +  + +S  L M+      AV   +
Sbjct: 1551 DSFMNSYPMVKVYFNRLVAQCKEKGYIETISGRRRYLPEIKSVRLKMRSHAERQAVNSTI 1610

Query: 499  IGTACELVKKAWRAKHQGVLQLWK 522
             G+A ++VK A    H  V  L  
Sbjct: 1611 QGSAADIVKMATYKIHCAVASLGW 1634


>gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex]
          Length = 1781

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 147/451 (32%), Gaps = 70/451 (15%)

Query: 161  EYCKRDVEATRELFKRLI------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              C   ++   +L +RL       P  D E  +      +   G   D      + +++ 
Sbjct: 1335 HECCALLDIFHQLKQRLSKEELLQPFVDVEMPMVATMLRMEQIGIAFDRSNCELILQILR 1394

Query: 215  QERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSH 267
               K L+E   +L      + S+++   +   L L             + +      +S 
Sbjct: 1395 NHLKMLEEAAHRLAGRSFSLTSTKEVSKIVASLNLCIEEKNPQSFINPLKKKFQPLSVSK 1454

Query: 268  SNITQLAKDLILNRLASSGSAILK---------LNTLSEAVSSDGRLRGTLQFYGASRTG 318
            +++ +L +   L R+      +           L   +  VS   R+ G  +F  A  TG
Sbjct: 1455 ASLIKLGRIHPLPRVVVEFRKVSAIIQTIICPLLQASTFHVSGVERIAGECEFRNA--TG 1512

Query: 319  RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            R +      Q++PR             +L+ G  I          VRS   A+ G  L+ 
Sbjct: 1513 RVNIVQPNLQHIPRP-----------FSLSDGRMIN---------VRSAFHAATGTTLLS 1552

Query: 379  ADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E R+LA ++ +       +    D++    +       + V+ ++R   K +  
Sbjct: 1553 ADYSQLELRILAHLSEDTGLCSILSKPNGDVFRGIVSVWKKKKQEDVTDDERQQAKQICY 1612

Query: 438  ALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
             + Y  G K      +       L +  F     +   F                     
Sbjct: 1613 GIVYGMGCKSLAEQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRSKGFVITLLGRR 1672

Query: 475  --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                   S++   + Q    AV  K+ G+A +LVK A    ++ + +   D+        
Sbjct: 1673 RFLPSINSNNAAQRAQAERQAVNTKIQGSAADLVKTAVILLNRSLKEKLSDVHLVHQIHD 1732

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +    I    V    R+V    +  + + + 
Sbjct: 1733 ELLFEIPTNCVERAARVVRHCMETAIPMKIR 1763


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 93/519 (17%), Positives = 158/519 (30%), Gaps = 94/519 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET         G+  Y +   I L  +     P + W       +P +    
Sbjct: 35  LRILGLDTET--------TGLNIYQDDFGIRLIQF---GNPWESW------VLPVERGGA 77

Query: 61  LRDETVM-------CVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKN 111
                V         V HN+ F+  + ++TLG+ +     +   T + +     P + K 
Sbjct: 78  FVGAAVTALQKVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKE 136

Query: 112 ACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCK 164
                   E           EE KA +AR  K    +        +     ++L+     
Sbjct: 137 GGTGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AG 193

Query: 165 RDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            D      L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++
Sbjct: 194 MDTILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRK 253

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            +             + S   T  L   L   TG+ +   +    + + +        + 
Sbjct: 254 SEHYTAVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEG 310

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L + A                  E   ++ R+   +    A RT R S      QNLP
Sbjct: 311 NALAKAAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLP 369

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
             +                             VR C +A  G+ +V  D    E RVLA 
Sbjct: 370 AND---------------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAA 402

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +   I+AF    D++  T            +   R +GK+      Y GGA    T 
Sbjct: 403 LANDRTMIRAFEEEADLHQVTA---------DAAGMDRKVGKMANFLTVYGGGAGKLATN 453

Query: 452 AS----HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           A          L  F+      +      Q E+ +L   
Sbjct: 454 AGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGYV 492



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETPD-TPYFSVGTLCSLMTKN 654
           +VQ+ SRD+    +      G    I L +HDE+++  P+     +   +  +M + 
Sbjct: 514 MVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQT 570


>gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1683

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/437 (14%), Positives = 138/437 (31%), Gaps = 55/437 (12%)

Query: 180  LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            L   E  L  +   +      +D+ +  K Q  +  + ++L+    KL      S     
Sbjct: 1239 LLQLEMPLVRVLADMETWSLGLDMRVCRKAQSHLHCKLRELEAQGEKLAGMSF-SLSAPA 1297

Query: 240  ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL------- 292
             +   L+    + +    +G          +  L     +  +     ++ KL       
Sbjct: 1298 EVAHVLYRHLKLPVPPGCKGKHHPSTDKQALEFLRNHHPIADIIKEHRSLSKLLQSTLGS 1357

Query: 293  --------NTLSEAVSSDGR-----LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      L  +     R     + G      ++ TGR S      Q +  +      
Sbjct: 1358 IIAWAKSPEPLFSSQERSSRGEIFSIAGHW-LQTSTATGRLSMEDPNLQCV--EHAVSFT 1414

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
            +          E   + + + +   R   + S  G  L+ AD + IE R++A  +G+   
Sbjct: 1415 IEGGRSLDGDQEKANNVVEVNA---RQAFVPSQEGWILLSADYSQIELRLMAHFSGDPSL 1471

Query: 399  IKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----AS 453
            +   ++   D++    A+    P+ +VS +QR   K +   + Y  G            +
Sbjct: 1472 VSLLSHPTGDLFRVLAAQWTGLPMCEVSDKQRERTKRLVYGILYGMGVNTLAEHLECPVA 1531

Query: 454  HCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEF 492
               + L++F       +T+                        ++  +     Q +    
Sbjct: 1532 EAQVMLERFKGTFPLVTTWLSHAVDSCRQKGYITTLSGRKRYLDKINTGKWGEQAKAERQ 1591

Query: 493  AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE-GGSISARRVANVPRLVM 551
            AV     G+A +L+K A    H  +    +        +  E    +  R + +V +++ 
Sbjct: 1592 AVNSICQGSAADLIKLAMIKVHDAISSSHQGSCRLLLQIHDELLLEVDKRVLKHVAQILR 1651

Query: 552  RRHKRDVHIVLPSSRRL 568
               +  + + +P   +L
Sbjct: 1652 SSMEGAITLRVPLRTKL 1668



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNT-ATSQLMRER 591
            E     A+ +    +         +   + S R+  Y + + G   YL+   T +   + 
Sbjct: 1527 ECPVAEAQVMLERFKGTFPLVTTWLSHAVDSCRQKGYITTLSGRKRYLDKINTGKWGEQA 1586

Query: 592  TYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDTPYFSV 644
                +   +I Q  + D++   M                ++L +HDE++ E        V
Sbjct: 1587 KAERQAVNSICQGSAADLIKLAMIKVHDAISSSHQGSCRLLLQIHDELLLEVDKRVLKHV 1646

Query: 645  GTL 647
              +
Sbjct: 1647 AQI 1649


>gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 26/180 (14%)

Query: 365 RSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   + S  G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D+
Sbjct: 1   RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60

Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474
           V    R   K +   + Y     G ++            + ++  +  +   +       
Sbjct: 61  VDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRF 120

Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                             +  S +  ++      A+   + G+A +++KKA     + ++
Sbjct: 121 AKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLV 180



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M          K    ++L VHDE++ E P+     +  + 
Sbjct: 160 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 212


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 158/519 (30%), Gaps = 94/519 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET     L   G++       I L  +     P + W       +P +    
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESW------VLPVERGGA 77

Query: 61  LRDETVM-------CVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKN 111
                V         V HN+ F+  + ++TLG+ +     +   T + +     P + K 
Sbjct: 78  FVGAAVTALQKVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKE 136

Query: 112 ACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCK 164
                   E           EE KA +AR  K    +        +     ++L+     
Sbjct: 137 GGTGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AG 193

Query: 165 RDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            D      L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++
Sbjct: 194 MDTILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRK 253

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            +             + S   T  L   L   TG+ +   +    + + +        + 
Sbjct: 254 AEHYTAVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEG 310

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L + A                  E   +D R+   +    A RTGR S      QNLP
Sbjct: 311 NALAKAAIEAKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTGRMSTSNPSAQNLP 369

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           VR C +A  G+ +V  D    E RVLA 
Sbjct: 370 ---------------------------SGDWMVRRCFLADPGQLMVSVDYQAQELRVLAA 402

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +   I+AF    D++  T            +   R +GK+      Y GGA    T 
Sbjct: 403 LANDRTMIRAFEEEADLHQVTA---------DAAGMDRKVGKMANFLTVYGGGAGKLATN 453

Query: 452 AS----HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           A          L  F+      +      Q E+ +L   
Sbjct: 454 AGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGYV 492



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETPD-TPYFSVGTLCSLMTKN 654
           +VQ+ SRD+    +      G    I L +HDE+++  P+     +   +  +M + 
Sbjct: 514 MVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQT 570


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 93/519 (17%), Positives = 158/519 (30%), Gaps = 94/519 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET         G+  Y +   I L  +     P + W       +P +    
Sbjct: 35  LRILGLDTET--------TGLNIYQDDFGIRLIQF---GNPWESW------VLPVERGGA 77

Query: 61  LRDETVM-------CVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKN 111
                V         V HN+ F+  + ++TLG+ +     +   T + +     P + K 
Sbjct: 78  FVGAAVTALQKVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKE 136

Query: 112 ACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCK 164
                   E           EE KA +AR  K    +        +     ++L+     
Sbjct: 137 GGTGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AG 193

Query: 165 RDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            D      L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++
Sbjct: 194 MDTILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRK 253

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            +             + S   T  L   L   TG+ +   +    + + +        + 
Sbjct: 254 SEHYTAVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEG 310

Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             L + A                  E   ++ R+   +    A RT R S      QNLP
Sbjct: 311 NALAKAAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLP 369

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
             +                             VR C +A  G+ +V  D    E RVLA 
Sbjct: 370 AND---------------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAA 402

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +   I+AF    D++  T            +   R +GK+      Y GGA    T 
Sbjct: 403 LANDRTMIRAFEEEADLHQVTA---------DAAGMDRKVGKMANFLTVYGGGAGKLATN 453

Query: 452 AS----HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           A          L  F+      +      Q E+ +L   
Sbjct: 454 AGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGYV 492



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETPD-TPYFSVGTLCSLMTKN 654
           +VQ+ SRD+    +      G    I L +HDE+++  P+     +   +  +M + 
Sbjct: 514 MVQSTSRDVTASAVLRLHDAGLAPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQT 570


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 95/562 (16%), Positives = 173/562 (30%), Gaps = 84/562 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           +  L +D ET     L   G++       I L  +     P + W              +
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLAL 116
             L+ +    V HN+ F+  + ++TLG+ +     +   T + +     P + K      
Sbjct: 84  TALQ-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKEGGTGH 141

Query: 117 NFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
              E           EE KA +AR  K    +        +     ++L+      D   
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AGMDTIL 198

Query: 170 TRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
              L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +   
Sbjct: 199 VSRLLGKVAPLVPEPSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYT 258

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                     + S   T  L   L   TG+ +   +    + + +        +   L +
Sbjct: 259 AVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAK 315

Query: 282 LASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            A                  E   ++ R+   +    A RT R S      QNLP     
Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLP----- 369

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +V  D    E RVLA +A + 
Sbjct: 370 ----------------------AGDWMVRRCFLADPGQLMVSVDYQAQELRVLAALANDR 407

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I+AF +  D++  T            S   R +GK++  A  +  G       A+  G
Sbjct: 408 TMIQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGPSTI---AAQAG 455

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +   +  + +           A S  L  +     + +         +   + + A +  
Sbjct: 456 ITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGYVITPTGRRLPVDP-DRGYAALNYM 514

Query: 517 VLQLWKDLTEGFACVVQEGGSI 538
           V    +D+T      + E G  
Sbjct: 515 VQSTSRDVTASAVLRLHEAGMT 536



 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETP-DTPYFSVGTLCSLMTKN 654
           +VQ+ SRD+    +    + G    I L +HDE+++  P      +   +  +M + 
Sbjct: 514 MVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVPEAEAEATAKEIGRIMEQT 570


>gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo
            abelii]
          Length = 2728

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 124/423 (29%), Gaps = 85/423 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER-KKLDEDIVKLTDGIIRSSRQTYAL 241
             E         +   G         + Q+ I Q + + ++    +L      S   +  +
Sbjct: 2213 VEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHSF-SFTSSDDI 2271

Query: 242  RMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI----LKLNTL 295
               LFL   +       ++G+ K++ S        + L L R  S+   +      L+ L
Sbjct: 2272 AEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2331

Query: 296  SEAVSSDGRL------------------------RGTLQFYGASRTGRWSGCVFQPQNLP 331
               +    R+                        R        + TGR +      QN+P
Sbjct: 2332 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVP 2391

Query: 332  RQ-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASDC 363
            R                + + + +  + RG                 E  AD     S  
Sbjct: 2392 RDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEERAADRGMPFSIS 2451

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      + 
Sbjct: 2452 MRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPES 2511

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE------ 473
            V  + R   K +   + Y  GAK                +  F       + F       
Sbjct: 2512 VGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKN 2571

Query: 474  ---------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                + ++ + +      A+   + G+A ++VK A     + + 
Sbjct: 2572 CKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTTVQGSAADIVKIATVNIQKQLE 2631

Query: 519  QLW 521
               
Sbjct: 2632 TFH 2634


>gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
 gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
          Length = 711

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 33/218 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L     ++   G +++ + + +    +  +   L+++I + T     +      L
Sbjct: 519 EIEMPLIYSLSSMEQAGVKVEREELKEYGSRLKVQIDVLEQEIYRDTGKEF-NINSPKQL 577

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296
              LF    +     ++       +   + +LA D  + +       + KL       L+
Sbjct: 578 GEILFGDMALPGGKKTK--TGYSTAADVLEKLAPDYPVVQKILDYRQLTKLYSTYAEGLA 635

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             + SDGR+ G       + TGR S      QN+P                         
Sbjct: 636 AFIGSDGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------V 670

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                  +R   +   G   V AD + IE R+LA ++G
Sbjct: 671 RMELGREIRKVFVPREGSVFVDADYSQIELRILAHMSG 708


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 182/561 (32%), Gaps = 86/561 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           +  L +D ET     L   G++       I L  +     P + W              +
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLAL 116
             L+ +    V HN+ F+  + ++TLG+ +     +   T + +     P + K      
Sbjct: 84  TALQ-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKEGGTGH 141

Query: 117 NFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
              E           EE KA +AR  K    +        +     ++L+      D   
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AGMDTIL 198

Query: 170 TRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
              L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +   
Sbjct: 199 VSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYT 258

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                     + S   T  L   L   TG+ +   +    + + +        +   L +
Sbjct: 259 AVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTTTGKRQVNAELLEALAEEGNALAK 315

Query: 282 LASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            A                  E   ++ R+   +    A RTGR S      QNLP     
Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLP----- 369

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +   D    E RVLA ++G+ 
Sbjct: 370 ----------------------SGDWMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQ 407

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AF    D++  T   A            R IGK+    + Y GGA     +A++ G
Sbjct: 408 TMLRAFEEESDLHQVTADAA-GVD--------RKIGKMANFLVCYGGGAG---KLATNAG 455

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL-VKKAWRAKHQ 515
           +   +  + ++  +T   +   ++ +  MQ +           G    +   +A+ A + 
Sbjct: 456 ITFPEAKKVLEVFAT--TYPGVDTLNKRMQQEAGSAGFITTPTGRRLPVDPDRAYSALNY 513

Query: 516 GVLQLWKDLTEGFACVVQEGG 536
            +    +D+T      + E G
Sbjct: 514 LIQSSSRDVTGAAVLRLHEAG 534



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 22/130 (16%)

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
           A  V E  + +   V  + + + +       I  P+ RRL   D     S LN       
Sbjct: 461 AKKVLEVFATTYPGVDTLNKRMQQEAGSAGFITTPTGRRLP-VDPDRAYSALNY------ 513

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETPD-TPYFSVG 645
                       ++Q+ SRD+    +    + G+   +   VHDE++   P+     +V 
Sbjct: 514 ------------LIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSLPEADAEAAVK 561

Query: 646 TLCSLMTKNP 655
            +  +M +  
Sbjct: 562 EVGQIMEQRI 571


>gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 462

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 120/374 (32%), Gaps = 51/374 (13%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E ++  +   +      +D + + +  +L+  + K+L+++  +   G I       
Sbjct: 14  YTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAHR-AAGEIFLITSNT 72

Query: 240 ALRMYLFLITGI----------DLVDMSEGT-------LKSILSHSNITQLAKDLILNRL 282
            LR  LF    +            ++  + T       LK +L   ++  L K ++  R 
Sbjct: 73  QLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIILEYRQ 132

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                +      LS   + + +     Q    ++  R  G       +  +E        
Sbjct: 133 VHKIKSTSVDGILSCMRNKNFQALPR-QPLQITKQQRVQGKEEVVVKVHPREMFIPQEGW 191

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
           T  A  + E +           R   I   G   V AD   +E R+LA  + +   ++ F
Sbjct: 192 TFVAAGKEEVVVKVHP------REMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLRIF 245

Query: 403 AN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457
            +   D++    ++       +V+ E R   K +  ++ Y  G    + +    A     
Sbjct: 246 NHPQSDVFTMLASQWKGLSQSEVTSEDREHAKRIVYSVVYGAGRERLSGILGVSAKQASQ 305

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKD 496
               F +  K    F      + H                        ++ Q    AV  
Sbjct: 306 FQDSFLRAYKDVQAFIQKTIQQCHQQGCVLSLMGRRRTLPNIHLSDWAVRMQAERQAVNF 365

Query: 497 KLIGTACELVKKAW 510
            + G+A +L K A 
Sbjct: 366 VVQGSAADLCKMAM 379


>gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
 gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
          Length = 1200

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 81/559 (14%), Positives = 177/559 (31%), Gaps = 85/559 (15%)

Query: 34   AYAWDDEPVKLWDRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            +Y  +   + L D            +++ L +  +  +++N       F K      P  
Sbjct: 537  SYIIEKYFITLIDNVGGLVEEKLKFMVEILENGLIKKISYNCSDGYKPFIKQYPYMKPIN 596

Query: 92   RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-- 149
             +     +A    L S   N   +    +   K E  K +     +  + +      +  
Sbjct: 597  SF--DIKIAAWL-LNSDGGNNGYSFEKVQEYGKDESIKTIQNISNRNIMQNQSEKIKKLI 653

Query: 150  --ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD---------GERDLWLLDQTINDRG 198
               N             +D+  + +++  L  L            E  +  L   +   G
Sbjct: 654  NEENEFSKENTNYGSFSQDIVYSLKIYLVLKNLLYDKDLSYNFIEEMSVVSLISKMELYG 713

Query: 199  YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---- 254
              ++  ++ + ++L+ ++   L E      D  + + R    +   ++    + L     
Sbjct: 714  ILLETKILNQYKKLLDEKSANLCEYFR---DNNLLNPRSIPQVTKVIYQDLKLKLPHPPP 770

Query: 255  -DMSEGTLKS--------------ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
              + + +L                +L + N+ ++ K  I   L  + S   K +      
Sbjct: 771  TKVDKKSLNEIKALNPNQEEFINNLLIYRNLEKINKTYISAYLELADSYYDKFHQNQNES 830

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE------RSEEILTQTIQALNRGETI 353
            +    ++      G + TGR S C    QN+ R          E+  +  I  L     I
Sbjct: 831  NKKAFIKCDWLQCG-TSTGRLSSCNPNMQNVCRNTSIISFDDEEDQASSQIDDLFLMTHI 889

Query: 354  ADPLGLASDC--------------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
             D      +               +R   I+ +G  ++  D   IE RV++  + +   I
Sbjct: 890  EDDQNQNQNHNQNQNQNQNQETINIRDAFISRDGYTMLAYDYNQIELRVMSHFSNDKHLI 949

Query: 400  KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHC 455
              F N +D+     +K  N  I+ V+ ++R   K +   + Y  G +      K   S  
Sbjct: 950  NYFNNNQDVIRRMASKLLNKEINDVTTDEREKTKRVVYGIMYGIGPQSLGKLLKISTSAA 1009

Query: 456  GLDLQQFSQNVKSTSTFEDWEQA--------------------ESHHLWMQDQYPEFAVK 495
             L +  F +     S+F    +                     E  + +        +V 
Sbjct: 1010 ELLINNFYKEFPQISSFITTTKNSLKQNDPEVRTISGRIRKLGEIKNSFDISIAKRRSVN 1069

Query: 496  DKLIGTACELVKKAWRAKH 514
              + G++ +++KK+    +
Sbjct: 1070 TIIQGSSADIIKKSMVKIN 1088


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 88/514 (17%), Positives = 160/514 (31%), Gaps = 91/514 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDLLQY 60
           L +D ET         G+  Y+      L  +   DE    W          +  +  + 
Sbjct: 38  LAVDTET--------TGLDIYSSTFRCRLVQFGTQDE---AWVLPVDESPTQLQQETREA 86

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNF 118
           L D+    V  N+ ++  +     GI +     + + T +LA+    P          + 
Sbjct: 87  L-DKLGKIVMQNASYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVD-PRPYGAGGFGHSL 144

Query: 119 SE------HLTKMEEGKALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRDVEAT 170
            E         + ++ K L+A+  K    +     +  +  H +    +  Y   D   T
Sbjct: 145 EELIAEFISKDQAKDVKGLMAKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTIFT 200

Query: 171 REL---FKRLIP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             +     RL+P     L   E  +  +   I+ +G+++D++   +L        +K   
Sbjct: 201 ARICRKLTRLVPDVSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELS--DRWLYEKSVW 258

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLI 278
           + +  T+  + +          +    G  +   ++         +          +   
Sbjct: 259 EAILFTEYGLDNPNSNEQCADVI-EEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAA 317

Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           L  +      + K          E   SD R   T      +RT R S      Q LP  
Sbjct: 318 LAAMIQEAQKLGKWRNTWVQKFLEVKDSDDRCH-TFVNPLQARTSRMSITGIPAQTLP-- 374

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR C +A  G  +   D    E RVLA ++
Sbjct: 375 -------------------------AGDWTVRRCFLAEPGHVMSSIDYQTQELRVLAALS 409

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I+AF  G D++  T          +V    R IGK+      Y GGAK     A+
Sbjct: 410 GDKTMIEAFKTGADLHQMTA------DAAQVP---RKIGKMANFLTVYGGGAKTLAEQAN 460

Query: 454 ----HCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
                    L+ F++     + +     AE+   
Sbjct: 461 IDFPTAKRVLEAFAKTYPGVARYSKKLAAEAGRQ 494



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             + R +    +      +    +   + R+    +  G    ++++       RTY   
Sbjct: 464 PTAKRVLEAFAKTYPGVARYSKKLAAEAGRQGYIVNGMGRRLPVDSS-------RTYSA- 515

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETP-DTPYFSVGTLCSLMTK 653
               ++Q+ SRD+ C  +    + G+   L   +HDEIV+  P +   +    +  LM +
Sbjct: 516 -LNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEIVASLPAEKAEWGAKKIGQLMAE 574


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 94/562 (16%), Positives = 173/562 (30%), Gaps = 84/562 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           +  L +D ET         G+  Y +   I L  +     P + W              +
Sbjct: 35  LRILGLDTET--------TGLNIYQDAFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLAL 116
             L+ +    V HN+ F+  + ++ LG+ +     +   T + +     P + K      
Sbjct: 84  TALQ-KVQRFVIHNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVD-PRAYKEGGTGH 141

Query: 117 NFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
              E           EE KA +AR  K    +        +     ++L+      D   
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AGMDTIL 198

Query: 170 TRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
              L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +   
Sbjct: 199 VSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYT 258

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                     + S   T  L   L   TG+ +   +    + + +        +   L +
Sbjct: 259 AVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAK 315

Query: 282 LASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            A                  E   ++ R+   +    A RT R S      QNLP     
Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLP----- 369

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A +G+ +V  D    E RVLA +A + 
Sbjct: 370 ----------------------AGDWMVRRCFLADSGQLMVSVDYQAQELRVLAALANDR 407

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I+AF +  D++  T            S   R +GK++  A  +  G       A+  G
Sbjct: 408 TMIQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGPSTI---AAQAG 455

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +   +  + +           A S  L  +     + +         +   + + A +  
Sbjct: 456 ITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGYVITPTGRRLPVDP-DRGYAALNYM 514

Query: 517 VLQLWKDLTEGFACVVQEGGSI 538
           V    +D+T      + E G  
Sbjct: 515 VQSTSRDVTASAVLRLHEAGMT 536



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETPD-TPYFSVGTLCSLMTKN 654
           +VQ+ SRD+    +    + G    I L +HDE+++  P+     +   +  +M + 
Sbjct: 514 MVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQT 570


>gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis]
          Length = 2242

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 120/367 (32%), Gaps = 63/367 (17%)

Query: 167  VEATRELFKRLIPLS-----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
              A  E  K   P+S     D E    L+   +  RG+ I+++ + +L  +I  +  +++
Sbjct: 1882 ANAVVEAVKEFSPISLSAYKDIEMPTILILANMELRGFGINVESLQELATVIKNDLGRIE 1941

Query: 222  EDIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
            E+  +         SS++          + G+   +       +  +  +      +L+ 
Sbjct: 1942 EEAFRAAGRKFNFYSSKEVSQ-------VLGL---NKRGRACTNKNALKSCENPISNLVT 1991

Query: 280  NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                 +      +  L +    + R+ G    Y    TGR S      Q +PR  +S+  
Sbjct: 1992 LWRKLTTVQTKIVFPLLQLERKNNRIHGNCITYTV--TGRVSMHEPNLQTIPRDFKSD-- 2047

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                             +      VR   + ++G  ++ AD   +E R+LA  + +    
Sbjct: 2048 -----------------ISGCILSVRMAFVPASGNIMLSADFCQLELRILAHFSQDPVLC 2090

Query: 400  KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHC 455
            K      DI+ +  A+   T  ++V  + R   K +  A+ Y  GAK          S  
Sbjct: 2091 KLLHGKGDIFKSIAARLNKTTEEQVDDDMRQRAKQLCYAMIYGMGAKSLAETLSATESEA 2150

Query: 456  GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494
               L+ F    K    +                            S    ++ Q    AV
Sbjct: 2151 KDYLEAFMGTYKGIRVWLTGVCEQARVEGFVSTIANRRRILPGINSKISAVKSQAERQAV 2210

Query: 495  KDKLIGT 501
              K+ G+
Sbjct: 2211 NTKVQGS 2217


>gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
 gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
          Length = 2736

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 127/424 (29%), Gaps = 85/424 (20%)

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            L PL + E  L  +   +   G  +   ++   +  +    ++L                
Sbjct: 2267 LRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLEARLRQLAHKAHVAAGMTFDL-N 2325

Query: 237  QTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                +   LF    +           +    +        + +    + R      ++ K
Sbjct: 2326 SPKDVSEVLFQHLNLQPPPCAFTSHHQKHPSTKXEVLEELEESTHHPILRYLLDYRSLHK 2385

Query: 292  L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---------ERSE 337
            L      TL       G+L G+   + A+ TGR S      Q +PR          E S 
Sbjct: 2386 LLTGFVETLYSTAR--GQLCGSW-LHTATATGRLSMDEPNLQTIPRPVEYCFQLSQEESP 2442

Query: 338  EILTQTIQALNRGETIADPLGLASDC--------------------------VRSCIIAS 371
               T+    +   E    PL                                +R+  +A 
Sbjct: 2443 RATTEMAVGVAGAEGQVPPLQPLQPAQGDGGEEAGGGGGGGGCRTVVRMHFNLRNAFVAP 2502

Query: 372  NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  ++ AD   IE R++A  +G+        N  +D +    A+     +++V+ E R 
Sbjct: 2503 PGHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEWKRLSVEQVTPEVRV 2562

Query: 431  IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ----NVKSTSTFEDW----------- 475
              K +   + Y  G     T+A+  G+ + + ++      ++    + W           
Sbjct: 2563 QAKRLAYGMLYGMGTS---TLAAELGVSVHEAAELSDNFRRAIPGVDRWMKEVVEQCRSC 2619

Query: 476  -----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                             E++       + Q    A+     G+A +LVK A  +  + + 
Sbjct: 2620 GYIVTLMGRRRYFPRINERSCKEARSQRAQSERQAINSVCQGSAADLVKAAMISLTRRIR 2679

Query: 519  QLWK 522
            +   
Sbjct: 2680 EEGW 2683


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 95/271 (35%), Gaps = 42/271 (15%)

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   I AF+ G+DI+++T A+ F   +D+V+ EQR   K +   L Y  
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGM 60

Query: 444 G--------------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQA 478
                          A+ +  +       +QQF  ++++ +  + +              
Sbjct: 61  SAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDI 120

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            S +   +      A+   + GTA +++K+A     + +     D        V +    
Sbjct: 121 NSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVI---RHDPDIEMIMQVHDELVF 177

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             R      ++   R +   H+   +  +   +  K     ++    ++ R  T+    T
Sbjct: 178 EVR----SEKVAFFREQIKQHMEAAAEFKTRLNTPKNLNFIVDCPIFKIARHTTH-PTFT 232

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
           +                      + I    H
Sbjct: 233 KGC---------KSAKFAIKLKTFSIQTHNH 254


>gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 143

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            V A T GLP SLK+    LN      KM+EGK LI  FC    +S       ++    W
Sbjct: 1   MVWAATLGLPLSLKDVGKVLNLDAQ--KMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGW 56

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           +LF  Y  RDV+    + ++L   P+ +   + + +DQ INDRG RID  L      +  
Sbjct: 57  KLFQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDE 116

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           + R +      KLT   + +      L+ 
Sbjct: 117 KHRAQALARAHKLTG--LDNPASPLQLQE 143


>gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus]
          Length = 2306

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 119/424 (28%), Gaps = 88/424 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 1792 VEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 1850

Query: 243  MYLFLITGIDL-----VDMSEGTLKSI-----------------LSHSNITQLAKDLILN 280
              LFL   +           + TL S                   S   + +L     L 
Sbjct: 1851 EVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHPLP 1910

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR----------TGRWSGCVFQPQNL 330
             L      I   N +++ V    R +    F G  R          TGR +      QN+
Sbjct: 1911 GLILEWRRIT--NAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNV 1968

Query: 331  PRQ-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASD 362
            PR                 +  + +   +RG                 E  +D     S 
Sbjct: 1969 PRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPFSV 2028

Query: 363  CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             +R   +   G  ++ AD + +E R+LA ++ +   I+    GED++ +  A+      +
Sbjct: 2029 SMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMMEPE 2088

Query: 423  KVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE----- 473
             V  + R   K +   + Y  GAK                +  F       + F      
Sbjct: 2089 SVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINHFMKETVK 2148

Query: 474  ----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                 + ++ + +      A+   + G+A ++VK A     + +
Sbjct: 2149 NCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQL 2208

Query: 518  LQLW 521
                
Sbjct: 2209 ETFH 2212


>gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus]
          Length = 2585

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 119/424 (28%), Gaps = 88/424 (20%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E         +   G           + ++  +   ++    +L      S   +  + 
Sbjct: 2071 VEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSF-SFTSSDDIA 2129

Query: 243  MYLFLITGIDL-----VDMSEGTLKSI-----------------LSHSNITQLAKDLILN 280
              LFL   +           + TL S                   S   + +L     L 
Sbjct: 2130 EVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHPLP 2189

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR----------TGRWSGCVFQPQNL 330
             L      I   N +++ V    R +    F G  R          TGR +      QN+
Sbjct: 2190 GLILEWRRIT--NAITKVVFPLQREKRLNPFLGMERIYPVSQSHTATGRITFIEPNIQNV 2247

Query: 331  PRQ-----------ERSEEILTQTIQALNRG-----------------ETIADPLGLASD 362
            PR                 +  + +   +RG                 E  +D     S 
Sbjct: 2248 PRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPFSV 2307

Query: 363  CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             +R   +   G  ++ AD + +E R+LA ++ +   I+    GED++ +  A+      +
Sbjct: 2308 SMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMMEPE 2367

Query: 423  KVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE----- 473
             V  + R   K +   + Y  GAK                +  F       + F      
Sbjct: 2368 SVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINHFMKETVK 2427

Query: 474  ----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                 + ++ + +      A+   + G+A ++VK A     + +
Sbjct: 2428 NCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQL 2487

Query: 518  LQLW 521
                
Sbjct: 2488 ETFH 2491


>gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis]
 gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis]
          Length = 425

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 104/365 (28%), Gaps = 67/365 (18%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  +      +   G+        +L+ ++  + + L+++  +L +             
Sbjct: 107 VEMPVMQCLVRMELNGFGFSEAECDRLKAILQAKLRTLEQEAYRLANHSFSL-------- 158

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
                            T    ++   + +L     L R+      +     L++ V   
Sbjct: 159 -----------------TSPDDVAREVLERLKSLHPLPRIILEWRRVN--CALTKVVFPV 199

Query: 303 GR-------LRGTLQF---YGASRTGRWSGCVFQPQNLPRQ---ERSEEILTQTIQALNR 349
            R       L  +  +      + TGR S      QN+PR    E    I         R
Sbjct: 200 QREKLFHKSLHMSRIYPTSQTHTTTGRVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRR 259

Query: 350 GETIADPLGLASD------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
            E I  P             +R+  +   G  L+ AD + +E R++A +A +    K   
Sbjct: 260 RENIQKPARSDHSGMSCAVSMRTAFVPCAGGVLLAADYSQLELRLIAHLADDSRLRKVLN 319

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D++              V  +QR   K +   + Y  GAK    +     L  +  S
Sbjct: 320 GGGDVFRMIAGSLAGLEPGSVDDKQRQRAKQICYGIIYGIGAKA---LGEQLELGEEDAS 376

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
             ++   +                      ++  L  T  +  K  +        +    
Sbjct: 377 MYIEKFKSRFS------------------GIRRYLKSTVEQCRKTGYVTTITKRRRYLPA 418

Query: 524 LTEGF 528
           +    
Sbjct: 419 VNSTH 423


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 93/516 (18%), Positives = 158/516 (30%), Gaps = 84/516 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           +  L +D ET     L   G++       I L  +     P + W              +
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLAL 116
             L+ +    V HN+ F+  + ++TLG+ +     +   T + +     P + K      
Sbjct: 84  TALQ-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVD-PRAYKEGGTGH 141

Query: 117 NFSE------HLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
              E           EE KA +AR  K    +        +     ++L+      D   
Sbjct: 142 KLEELTKFYIDPATAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELY---AGMDTIL 198

Query: 170 TRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
              L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +   
Sbjct: 199 VSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYT 258

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                     + S   T  L   L   TG+ +   +    + + +        +   L +
Sbjct: 259 AVARYAYG--VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAK 315

Query: 282 LASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            A                  E   +D R+   +    A RT R S      QNLP  +  
Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTARMSTTSPSAQNLPAND-- 372

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +V  D    E RVLA +A + 
Sbjct: 373 -------------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALANDR 407

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS--- 453
             I+AF    D++  T            +   R +GK+      Y GGA    T A    
Sbjct: 408 TMIRAFEEEADLHQVTA---------DAAGMDRKVGKMANFLTVYGGGAGKLATNAGITF 458

Query: 454 -HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
                 L  F+      +      Q E+ +L     
Sbjct: 459 PEAKKVLDIFAATYPGVTDLSKSLQREAANLGYVIT 494



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETPD-TPYFSVGTLCSLMTKN 654
           +VQ+ SRD+    +    + G    I L +HDE+++  P+     +   +  +M + 
Sbjct: 514 MVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQT 570


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 92/266 (34%), Gaps = 49/266 (18%)

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            L       G + TGR S      QNLPR   +          L                 
Sbjct: 971  LHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITSTEEEGEEDLLG---------------F 1014

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R C +A+ G  L+  D   IE RVLA + G+   +KA  +  DI+ T     F      V
Sbjct: 1015 RRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVFKKKP--V 1072

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF-------SQNVKSTSTFEDWEQ 477
            S E+R++ K +   + Y  G    KT+A+H G+ + +        +      +T+     
Sbjct: 1073 STEERSLAKRVVFGVLYGAG---PKTLATHMGVTVDRALHITSLLTNAFPGINTYHRRVI 1129

Query: 478  AESHH---------------------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            AE+                       L  +      A    + G+A +++K A  A  + 
Sbjct: 1130 AETRANGFVRTLSGRLRYLPDICSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKE 1189

Query: 517  VLQLWKDLTEGFACVVQEGGSISARR 542
            VLQ +          + +      R+
Sbjct: 1190 VLQRYDRSDVSLLSQIHDEMVFMVRK 1215


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 101/612 (16%), Positives = 187/612 (30%), Gaps = 116/612 (18%)

Query: 73  SLFER---ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS-EHLTKMEEG 128
           S+F+        + L   +    WI  + +     +  S+    L             E 
Sbjct: 308 SVFDAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDIER 367

Query: 129 KALI---ARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKR-DVEATRELFKRLI-PLSD 182
           K +    A   +    +         HV  W + + E   R +V +  +  + L  P SD
Sbjct: 368 KGMNVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPYSD 427

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ---ERKKLDEDIVKLTDGIIRSSRQTY 239
            +         I       +++   +  E   Q   +++ +      LT     +S    
Sbjct: 428 AQGK------AILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFGLTPISFTASGLPS 481

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN----TL 295
                L  + G    +  +               A    L  L    S    LN     L
Sbjct: 482 VTASVLEELAGNPEANPPKYGKAYDHFADKEEGAAACHALRALYEISSINTMLNNFILPL 541

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            E   S GR+  +L     + TGR S      QN P  E+                    
Sbjct: 542 QELADSAGRVHCSLNLN--TDTGRLSSRKPNLQNQPALEKDRY----------------- 582

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +A  GKKL+VAD + +E R+LA I      I+AF  G D +  T   
Sbjct: 583 -------KIRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVA 635

Query: 416 AFNTPIDKVSKEQRAIGKVMELALG-----YQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            ++            + K +E         Y  G      +        ++ ++ +  + 
Sbjct: 636 MYD-----------NVAKAVESGEVLLEWDYTKGTSPPVPLLKEKFATERKNAKILNFSI 684

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
            +       S    ++                   +   W    Q V + W++       
Sbjct: 685 AYGKTPFGLSKDFGVRR-------------VEASKILDKWYGGRQEVRK-WQE------- 723

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                 +I   R     R +M R++R    +L S+  +                    + 
Sbjct: 724 -----QAIDTARKFGYTRTLMGRYRRLPDAMLKSNSFIS------------------RKA 760

Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
           +++  +   N  +Q  + D++ + M    KN      G+++V  +HDEI+ E P+     
Sbjct: 761 QSHAERAAVNTPIQGAAADLVMQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAEE 820

Query: 644 VGTLCSLMTKNP 655
              +   + +NP
Sbjct: 821 AKAIVKDLMENP 832



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 152/662 (22%)

Query: 37  WDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           + + P    D              +L D ++  V HN  F+R +        I  +    
Sbjct: 175 YGNGPYIWVDNLDNAEGTLEYFRAFLEDSSLKKVWHNYSFDRHVL---FNHGINVQGLHG 231

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC--KGSIDSPPYD---CTRA 150
            ++        +  K    +L         +  K +   F   K   D  P         
Sbjct: 232 DTMHMARLWNTARFKRGGYSLQALTSDLLHQRKKNMKELFGTPKPRKDGSPGKEKTIPNV 291

Query: 151 NHVQAWQLFGEYCKR----DVEATRELFKRLIPLSD---------------GERDLWLL- 190
             +Q    F     R    D E+T  L + L    +                +R ++   
Sbjct: 292 ADLQRCADFRSRWIRYSVFDAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFY 351

Query: 191 ----------DQTINDRGYRIDLDLVLKLQELIAQERKKLD-----------EDIVKL-- 227
                        I  +G  +D   + ++++    +RK+L+           E+  ++  
Sbjct: 352 LKYLVPFGECLTDIERKGMNVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNV 411

Query: 228 -----TDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLIL 279
                   ++ +       +  L      ++ +     E   +      NIT     L  
Sbjct: 412 YSAAQKQQLLFAPYSDAQGKAILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFGLTP 471

Query: 280 NRLASSGSAILKLNTLSEAVS-------SDGRLRGTLQFYGASRTG--------RWSGCV 324
               +SG   +  + L E            G+                        S   
Sbjct: 472 ISFTASGLPSVTASVLEELAGNPEANPPKYGKAYDHFADKEEGAAACHALRALYEISSIN 531

Query: 325 FQPQN--LPRQERSE---------EILTQTIQALNRGETIADPLGLASDC--VRSCIIAS 371
               N  LP QE ++          + T T +  +R   + +   L  D   +R   +A 
Sbjct: 532 TMLNNFILPLQELADSAGRVHCSLNLNTDTGRLSSRKPNLQNQPALEKDRYKIRDAFVAP 591

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-----TPIDKV-- 424
            GKKL+VAD + +E R+LA I      I+AF  G D +  T    ++         +V  
Sbjct: 592 KGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDNVAKAVESGEVLL 651

Query: 425 ----SKE--------------QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS--- 463
               +K               +R   K++  ++ Y    K    ++   G+   + S   
Sbjct: 652 EWDYTKGTSPPVPLLKEKFATERKNAKILNFSIAYG---KTPFGLSKDFGVRRVEASKIL 708

Query: 464 ---------------QNVKSTSTFEDWEQAESHH---------------LWMQDQYPEFA 493
                          Q + +   F         +                  Q      A
Sbjct: 709 DKWYGGRQEVRKWQEQAIDTARKFGYTRTLMGRYRRLPDAMLKSNSFISRKAQSHAERAA 768

Query: 494 VKDKLIGTACELVKKAWRAKHQG---VLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
           V   + G A +LV +A    ++        W+ + +    ++ EG   +A     + + +
Sbjct: 769 VNTPIQGAAADLVMQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAEEAKAIVKDL 828

Query: 551 MR 552
           M 
Sbjct: 829 ME 830


>gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa]
 gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 127/408 (31%), Gaps = 64/408 (15%)

Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           C R V  TR L   L  L           + E  L  +   +   G  +D++  L  + +
Sbjct: 160 CCRRVAQTRALCSGLWKLLTSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGCLNARTV 219

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEGTLKSILSHSNIT 271
           + +  + L++   KL             +   L+    + +    ++G          + 
Sbjct: 220 LGKRLRYLEKKAYKLAGMTFSLYT-AADIANILYRHLKLPIPEGHNKGKKHPSTDKHCLD 278

Query: 272 QLAKDLILNRLASSGSAILKL-NTLSEAVSSDGRL---------RGTLQFYGASRTGRWS 321
            L  +  +  +      + KL N+   ++ S  RL          G      ++ TGR S
Sbjct: 279 LLRHEHPIVPVIREHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHW-LQTSTATGRLS 337

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380
                 Q +              +  +  E             R   +   +   L+ AD
Sbjct: 338 IEEPNLQCV--------EHAVDFEMSSDKEGDDAEPEHYKINARDFFVPTQDNWLLLTAD 389

Query: 381 LAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            + IE R++A  + +   IK       D++    A+    P   VS  +R   K M   +
Sbjct: 390 YSQIELRLMAHFSKDTALIKLLTKPHGDVFNLIAARWTGKPEASVSSVERDQTKRMVYGI 449

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTST--------FEDWEQAESHHLWM------ 485
            Y  GA    T+A        + ++ +KS  +          +   +     ++      
Sbjct: 450 LYGMGA---NTLAEQLDCSSDEAAEKIKSFKSSFPGVASWLHEAVASCREKGYVETIKGR 506

Query: 486 --------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                         + +    AV     G+A +L+K A    H  ++ 
Sbjct: 507 KRFLSKIKFGNSEEKSKAQRQAVNSICQGSAADLIKIAMINIHSLIVD 554



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 38/136 (27%)

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSD-VKG------DCSYLNTATS-QLMRERTYGGKLTE 599
           +         +H  + S R   Y + +KG         + N+    +  R+         
Sbjct: 477 KSSFPGVASWLHEAVASCREKGYVETIKGRKRFLSKIKFGNSEEKSKAQRQA------VN 530

Query: 600 NIVQAISRDILCEGMKNAT-----------------------KNGYDIVLTVHDEIVSET 636
           +I Q  + D++   M N                         K    I+L VHDE+V E 
Sbjct: 531 SICQGSAADLIKIAMINIHSLIVDGVGRPESSSLHANKFHMLKGQCRILLQVHDELVLEV 590

Query: 637 PDTPYFSVGTLCSLMT 652
            D    +   +   M+
Sbjct: 591 -DPSLINEAAVLLQMS 605


>gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus]
          Length = 467

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 139/442 (31%), Gaps = 60/442 (13%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   + +    +D + + +   L+    K+L+++   +             LR 
Sbjct: 34  ELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIM-SNNQLRE 92

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-------LILNRLASSGSAILKLNTLS 296
            LF    + L+      L      + ++            +       + +A   L +  
Sbjct: 93  ILFGKLKLHLLS-QRKHLPRTGLQNQLSTSEAMTQWRTSGVPAGPHCCATTADSCLLSWL 151

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +   G +  T    G + TGR S      Q + +           I+           
Sbjct: 152 YPIGLLGSISSTWNQTG-TVTGRLSAKHPNIQGISKHP---------IKISKPWNFKGKE 201

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYA 414
               +   R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ T  +
Sbjct: 202 EETVTISPRTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTS 261

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
           +  + PI++V+   R   K +  ++ Y  G    A             L++F Q  K   
Sbjct: 262 QWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIK 321

Query: 471 TFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            F                         +  +    ++ Q    AV   + G+A +L K A
Sbjct: 322 DFAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLA 381

Query: 510 WRAKHQG-----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                             V Q+  +L            +   RR+    + V      ++
Sbjct: 382 MIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQV---QTLEL 438

Query: 559 HIVLPSSRRLVYSDVKGDCSYL 580
            + +P    L      G  + L
Sbjct: 439 QLQVPLKVNLSVGRSWGHLTPL 460


>gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri]
 gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri]
          Length = 538

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/443 (14%), Positives = 128/443 (28%), Gaps = 83/443 (18%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  + +    +  RG   D       +       ++L      +  G+  +      + 
Sbjct: 125 VEAKIAVALGAMQHRGMCFDRHEANTQRAAANARVEELQNRARDVIGGVEINLSSAQQVG 184

Query: 243 MYLFLITGIDLVDMS--EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE--- 297
             L+    +        +G   S LS S            ++       LK   + +   
Sbjct: 185 DVLYNQLKLPPPSAHAMKGAKSSHLSTSVDVLQQMKHPFAQIVLDHRGALKERAMCDGYD 244

Query: 298 ---AVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
               V+++G  R+        ++ TGR S      Q + R                    
Sbjct: 245 KATVVNAEGHARIHTRWNN-TSTATGRLSSSAPNVQQVGRGSM----------------- 286

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG---EDIY 409
                       R+C IA  G+ LV AD + IE RVLA +  ++  I  F       D++
Sbjct: 287 ------------RNCFIAPPGRVLVAADYSQIELRVLAHLTEDERLISLFNEHSRTVDVF 334

Query: 410 VTT--YAKAFNTPIDKVS-KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462
                  +  N PI+  +    R I K     + Y     G A+            +  F
Sbjct: 335 CAIWNAGR--NLPIETPTEPGTRDIAKRTAYGIVYGQHATGLAEKLNCSKFEAQGYIAAF 392

Query: 463 SQNVKSTSTFEDWEQAESHHLWM----------------------QDQYPEFAVKDKLIG 500
            +       +       +                           + +    AV   + G
Sbjct: 393 HRAFPRVQQWISRVIQTAERDGAVIIPFSGRHRPLPKIHSNVFSERSEAQRQAVNTVIQG 452

Query: 501 TACELVKKAW------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
           +A +L+K A           +   +L + + +    ++ E      +    V R  M   
Sbjct: 453 SASDLIKTAMLRWCEATKAGEARAELVELVAQIHDELLFECEKDYVQEAVRVIRSCM--- 509

Query: 555 KRDVHIVLPSSRRLVYSDVKGDC 577
           +  + + +P+  ++      G+ 
Sbjct: 510 EGALCLSVPTPVKISTGKSWGEL 532


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 79/246 (32%), Gaps = 49/246 (19%)

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                      L   ++    ++  T      + +GR+S      Q +PRQ         
Sbjct: 1   MYKLYSAFYLKLPLHINKQTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ--------- 50

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   I S     ++AD   IE ++ A I  ++  +KA+
Sbjct: 51  -------------------QNIREIFIPSENNIFIIADFKQIELKIAAEITNDEIMLKAY 91

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            N  D++  T +      ID+++KE R + K +   L Y       +T A+         
Sbjct: 92  NNNIDLHTLTASIITKKGIDEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNL 151

Query: 463 SQ-NVKSTSTFEDWEQAESHHLWMQDQYP------------------EFAVKDKLIGTAC 503
            Q      S FE ++     H  ++                        A+   + GT  
Sbjct: 152 DQCLYFYNSFFEHYKGLSRWHNSVKQTRALEYSTLSNRKVVFPYFSFTKALNYPVQGTCA 211

Query: 504 ELVKKA 509
           +++K A
Sbjct: 212 DILKLA 217



 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDIVLTVHDE 631
              Y   +  +++       K     VQ    DIL   +    KN       I+L VHDE
Sbjct: 180 ALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDE 239

Query: 632 IVSETPDT-PYFSVGTLCSLM 651
           I+ E        ++  L   M
Sbjct: 240 IIIEVDKKHQEEALKILVESM 260


>gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus]
          Length = 1821

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 117/349 (33%), Gaps = 64/349 (18%)

Query: 208  KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            KL+++     +KL ED +   +  + S      +R     I        ++  LK IL  
Sbjct: 1410 KLKKIRKMRSQKLAEDTLTEVNNRLNSP-----IRAESSDIARNKTKQKAKPKLKEILER 1464

Query: 268  SNI-----TQLAKDLILNRLASSGSAILKL--------NTLSEAVSSDGRLRGTLQFYGA 314
            + +     T        +    S ++  K+          L +   +D R+RG       
Sbjct: 1465 NLLLANCNTDSIIYNSEDETTLSLASKTKIIETQSNLIQPLLKLAQTDSRVRG--NSITC 1522

Query: 315  SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
            + TGR S      QN+P+                     +         VR   + + G 
Sbjct: 1523 TVTGRVSMHEPNLQNVPKD-------------------FSFADNNFVLSVRMAFVPALGN 1563

Query: 375  KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             ++ AD   +E R+L   + +    +      DI+ +  AK  N   ++V+ E R   K 
Sbjct: 1564 IMLSADYCQLELRLLTHFSQDSILCEIMRQPGDIFKSIAAKWNNVSEEEVTIEMRQRTKQ 1623

Query: 435  MELALGYQGGAKVFK----TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------L 483
            +   + Y  G K          S     L+ F         + +    E+H        L
Sbjct: 1624 LCYGMIYGMGVKSLAENLCISESEAQEFLESFMSTYPGIYKWLNNVLEEAHRDVYITTLL 1683

Query: 484  WMQDQYP--------------EFAVKDKLIGTACELVKKAWRAKHQGVL 518
              + Q+P                AV  K+ G+A ++VKKA  +  + + 
Sbjct: 1684 GRRRQFPDLKSTKSSTRAQAERQAVNTKVQGSAADIVKKAMISIEERIR 1732


>gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi]
 gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi]
          Length = 475

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 131/436 (30%), Gaps = 76/436 (17%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E    +L   I   G   D +  L L   + Q+  +++     ++     +      +
Sbjct: 72  ELELKSVVLFSEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGISGIPF-NFGSAAEI 130

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI-----LKLNTLS 296
              LF+   I   + S G      +   + QLA    +  L      I       L  L 
Sbjct: 131 SQILFVRLQIPPPNASTG-RHYSTNKIVLQQLAPKYPIISLILEWRRINTALTTSLPILL 189

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +   SDGR+R    F     TGR        QN+ +    +                   
Sbjct: 190 KLCCSDGRIRA--NFITHCCTGRVLTVHPNVQNVQKDAIID------------------- 228

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +RS  I   G+ L+ +D   +E R+LA ++ +   I  F   +D +     K 
Sbjct: 229 ----GFSIRSLFIVPKGRILLSSDYRQLEMRMLAHLSADPNLISLFLTKDDFFEIITNK- 283

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472
           +N       K  R   K +   + Y  GA    K       H    +  F Q      T+
Sbjct: 284 WNKNETLHIKVDRNKVKQLCYGIIYGMGAISLSKELGISKQHAQQMIISFFQLFPKVRTW 343

Query: 473 EDWEQAESHHLWMQD----------------------QYPEFAVKDKLIGTACELVKKAW 510
            D   A                               Q    A+   + G+  EL K A 
Sbjct: 344 MDKILAMCRTNGFVSTLLGRRRFLPQITSAVLQTELAQAERQAINTCIQGSVAELFKMAL 403

Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
               +         V+QL  ++       + E    S   +  + +  M     ++ +  
Sbjct: 404 LNLRKNLLGTNSSIVMQLHDEV-------LIETDESSIASIVEIIKHSMTSVTPNLRV-- 454

Query: 563 PSSRRLVYSDVKGDCS 578
           P + ++ +    G+  
Sbjct: 455 PLAVKISFGKSWGELQ 470



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
           M R    V  +L   R L     +   + L T  +Q  R+           +Q    ++ 
Sbjct: 350 MCRTNGFVSTLLGRRRFL----PQITSAVLQTELAQAERQA------INTCIQGSVAELF 399

Query: 611 CEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL 647
              + N  KN       IV+ +HDE++ ET ++   S+  +
Sbjct: 400 KMALLNLRKNLLGTNSSIVMQLHDEVLIETDESSIASIVEI 440


>gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni]
 gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni]
          Length = 2080

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 123/369 (33%), Gaps = 52/369 (14%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  + L    +   G+    + +  L + +    KKL+  I +L              
Sbjct: 1673 DLEMPIQLSLCNMEFTGFPAKQESLQGLSQQMLSTMKKLEAKIYELHGSRFNLGSSQAVA 1732

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            ++      G+      + +    +     + +++ ++  R  S+  A   +  L +    
Sbjct: 1733 KV-----LGLHRKASGKVSTSRQILEKLDSPISQLIVGYRKLSTVLA-KNVQPLLKC-CQ 1785

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+ G    Y A  TGR S      QN+ +         +   +               
Sbjct: 1786 DNRVYGQSLSYTA--TGRISMSEPNLQNVAKDFEINLDSDKVNISC-------------- 1829

Query: 362  DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               RS  +  + K+ L+ AD   +E R+LA ++ +   ++   +  D++    A+  +  
Sbjct: 1830 ---RSAFLPMDFKRCLISADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMN 1886

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDW- 475
              +VS+  R   K +   + Y  G +                 +QF Q     S +    
Sbjct: 1887 ESEVSENLRNGTKQICYGIVYGMGMRSLAESLKCTENEAQTVSEQFHQTYAGISAYIQKV 1946

Query: 476  --------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                E   S  L +++Q    A+   + G+A ++ K A     +
Sbjct: 1947 VKFARNNGYVETITGRRRYLEHINSGELQIKNQAERQAINSTIQGSAADIAKSAILRMEK 2006

Query: 516  GVLQLWKDL 524
             +L+  + L
Sbjct: 2007 HLLRYRERL 2015


>gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra
           magnipapillata]
          Length = 493

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 121/408 (29%), Gaps = 90/408 (22%)

Query: 170 TRELFKR----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             EL  +    +    D E         I   G         KL+E++  +   + ++  
Sbjct: 33  EMELRLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEILKGKLDSIQQECY 92

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           KL+  +   S                              +   + +L+K   L +L   
Sbjct: 93  KLSGSVFSLSSPADV-------------------------AREVLEKLSKFHALPKLILE 127

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASR----------TGRWSGCVFQPQNLPR--- 332
              I   +TL++ V    R + +       R          TGR +      QN+P+   
Sbjct: 128 WRKIN--STLTKFVYPVQRRKRSSDVLQMHRIFTEAIYRTCTGRVTFSEPNLQNVPKEFD 185

Query: 333 -----------------QERSEEILTQTIQAL----NRGETIADPLGLASDCVRSCIIAS 371
                             ++ +  L  + + L          +    + +  +RS  +  
Sbjct: 186 IKLSSLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSMRSTFVPF 245

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +   +V AD   +E R++A ++ +   IK      D++ +  A+  +  +  V+  QR  
Sbjct: 246 SSGVMVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDVTTVQRQH 305

Query: 432 GKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------ 481
            K +   + Y  G K          +     +++F    K    F      E+       
Sbjct: 306 AKQICYGIIYGIGIKALSHQLGVEENDASEYMEKFKNRFKGVKRFIQNTIEEARANGFVK 365

Query: 482 ---------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                              +      AV   + G+A +LVK A     
Sbjct: 366 TLGGRKRYLPAINSKITNDKSHAERQAVNTTIQGSAADLVKIAMNNID 413


>gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 958

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 137/447 (30%), Gaps = 105/447 (23%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL----TD 229
              L      E+ + ++   +   G+ ++L  V   +   A++ +KL  +   +    T+
Sbjct: 446 HGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTN 505

Query: 230 GIIRSSRQ-TYALRMYLFLITGIDLVDMSEGTLKSIL----------SHSNITQLAKDLI 278
             I+S+     AL   L L   +        T  + L          S   +  LA+   
Sbjct: 506 FNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGKLSTSEETLRILARHHE 565

Query: 279 LNRLASSGSAILKL------------------------------------NTLSEAVSSD 302
             R+  +   + KL                                    N      +  
Sbjct: 566 FPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSITEQGKEAIPNASDRHKAKW 625

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPR-----------QERSEEILTQTIQALNRGE 351
            +L   L   G + TGR +      Q LPR                +      + +N   
Sbjct: 626 AKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTNDADSENGNYENINGDV 684

Query: 352 TIADPLGLASD---------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
             AD  G  SD          +R C+ A +G  LV  D   +E RVLA ++G+   I   
Sbjct: 685 NAADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVL 744

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
               DI+ +     F      V+ E+R++ K +   + Y  G    + +A   G+ ++Q 
Sbjct: 745 TKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAG---PRGLAQQMGVSVEQA 799

Query: 463 ---SQNVKSTSTFED-------------------------WEQAESHHLWMQDQYPEFAV 494
              S   KS     D                                 L  +      A 
Sbjct: 800 LRVSSLFKSCFPTVDAYQRRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAF 859

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLW 521
              + G+A +++K    A  + VLQ  
Sbjct: 860 NTVVQGSAADVMKLGMIAVEREVLQPH 886


>gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818]
          Length = 830

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 134/471 (28%), Gaps = 81/471 (17%)

Query: 157 QLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           Q   +   R   A   LF RL         S  E     L   +   G  ID + + + +
Sbjct: 372 QWLHKLASRHAAAFDHLFARLRACDQAELYSRLEAPAIWLLAEMQVHGIHIDTETLKQQR 431

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSIL 265
             I Q   +L+     L    +        LR YL+    + +         +G L +  
Sbjct: 432 VQIQQCLAELEARAEALVGFKLLL-TSPLQLREYLYDQLQLHVGIPNFPRTPKGKLSTGE 490

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD---GRLRGTLQFYGASRTGRWSG 322
               + +   +L    L     A   L T  + V      G L        A+ +GR S 
Sbjct: 491 DALTLIKDRHELPNL-LLLHRRAARLLCTYIDGVLPHVTHGMLHPEWLQTSAA-SGRVSC 548

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                Q++P +E           AL     +  P        R+  +A  G   V  D  
Sbjct: 549 QQPNIQSVPLRE----------TALRLDLLVVSP--------RAAYVAPGGCVYVSLDWR 590

Query: 383 GIEARVLAWIAGEDWKIKAFANGE-----------------------DIYVTTYAKAFNT 419
            +E R+LA  + ++  I  F N E                       D +    +K F  
Sbjct: 591 QMELRLLAHFSEDEGLIALFQNQEAKAKANTPPSTANATSREEGGTSDPFKALASKWFCV 650

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           P+++V+  QR   K    A  Y  GA    KV +         LQ F +         D 
Sbjct: 651 PVEQVTGRQRDQVKRCLYAFIYGSGALHLSKVLEVSVHEAKKLLQAFRRRHPRIQHLRDQ 710

Query: 476 EQAESHHLWMQ---------------DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                     D     A    L G+A ++ K A       + + 
Sbjct: 711 VLIRLKETGFVSCLSRRRRYFKDSANDHSQRAAFNFLLQGSAADICKAAMI----NLREF 766

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +        V Q    I         + V+   +           R+ + 
Sbjct: 767 LRAKQMRSFMVAQLHDEIILECPEKEAKEVLAFTRGPAFCEPFGRMRVPFP 817


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 153/484 (31%), Gaps = 122/484 (25%)

Query: 203 LDLVLKLQELIAQERKKLDEDIVKL----TDGIIRSSRQTYALRMYLFLITGIDLV---- 254
           ++L  +  E +A    K D+DI KL     + +  +          L+ I GI L     
Sbjct: 249 MELYERGVEEMAVPPAKRDDDIAKLRNKYKNKLKFNPNSATDKGKVLYQIMGITLPYDKE 308

Query: 255 ---------------------DMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKL 292
                                   +  L  I+ H    ++ A  L+ + L  +       
Sbjct: 309 HIKESAFDVGKPENKLTWEDYKTDKKALNYIVDHFPDQKVFASLLLEHSLVKTRKNNFTA 368

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L+   + DGR+ G+    G + T R S      Q LP                    +
Sbjct: 369 KLLNFISNKDGRVHGSFNATG-TETTRLSSNNPNMQQLP-----------------AKTS 410

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                       R    A     L+  D + +E R+LA  AG++   +AF +G D++  T
Sbjct: 411 NPKRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKET 470

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            +  +  P+DKV  E R   K +   + Y    +   + A    + +++          F
Sbjct: 471 ASIVWGMPVDKVPAEFRKKAKAVNFGIAYG---ETPFSFAPKHDMSVEEAEDI------F 521

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
           + +   + +     D+    A++D  + T                               
Sbjct: 522 QRYFANKPNIKTFIDETHREALRDGFVDT------------------------------- 550

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                     +    RL+     +D  I   + R+ V + ++G  +Y    +   + +  
Sbjct: 551 ----------LQGHRRLIRDAFSKDKQIQNGALRKSVNTKIQGTGAYCTNMSLIYIDQY- 599

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
                           I    MK+       +VLTVHD IV + P      +  +C  +M
Sbjct: 600 ----------------IQDNNMKS------KLVLTVHDSIVVDCPPEEIEIMARVCKTIM 637

Query: 652 TKNP 655
              P
Sbjct: 638 ENLP 641


>gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
 gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
          Length = 2054

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 135/411 (32%), Gaps = 57/411 (13%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            + E  + ++   +   G+      + +L + +     K++  I K+           + L
Sbjct: 1645 EVEMPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHG-------SKFNL 1697

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-- 299
                 +   + L     G +    S   + +L   +    L      +  +  +   +  
Sbjct: 1698 GSTQAVANVLGLHRKPHGRV--STSRQVLEKLGSPISELILNHRKLNMQIVKGMQPLIRC 1755

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                R+ G    + A  TGR S      QN+ +                    I      
Sbjct: 1756 CKANRIHGHSITHTA--TGRISMSEPNLQNVAKD-----------------FDIRMGPDS 1796

Query: 360  ASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 RS   + + K+ L+ AD   +E R+LA ++ +   +    + +D++    A   +
Sbjct: 1797 VRISCRSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNH 1856

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFED 474
             P  +V+++ R+  K +   + Y  G +      +   S   L  +QF Q+      + +
Sbjct: 1857 IPEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTESEAQLICEQFHQSYPGIRAYTE 1916

Query: 475  WEQAESHHLWMQD---------------------QYPEFAVKDKLIGTACELVKKAWRAK 513
                 +  L   +                     Q    AV   + G+A ++ K+A    
Sbjct: 1917 KVLKFARKLGYVETITGRRRYLDHINSGEQNLIKQAERQAVNTTIQGSAADIAKRAILDM 1976

Query: 514  HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
             + + + WK L       +Q    I    V  VP    +R  + + + + S
Sbjct: 1977 DKNIGRYWKKLGVE-ENSIQLVLHIHDELVYEVPEAKAKRIAKFLGLTMES 2026



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 32/150 (21%)

Query: 522  KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYL 580
            + L +   C   E   I   +       +    ++ +      +R+L Y + + G   YL
Sbjct: 1884 RSLGDALQCTESEAQLI-CEQFHQSYPGIRAYTEKVLKF----ARKLGYVETITGRRRYL 1938

Query: 581  N-------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------------ATKN 620
            +           Q  R+           +Q  + DI    + +               +N
Sbjct: 1939 DHINSGEQNLIKQAERQA------VNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVEEN 1992

Query: 621  GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
               +VL +HDE+V E P+     +     L
Sbjct: 1993 SIQLVLHIHDELVYEVPEAKAKRIAKFLGL 2022


>gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis]
 gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis]
          Length = 2193

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 135/411 (32%), Gaps = 57/411 (13%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            + E  + ++   +   G+      + +L + +     K++  I K+           + L
Sbjct: 1784 EVEMPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHG-------SKFNL 1836

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-- 299
                 +   + L     G +    S   + +L   +    L      +  +  +   +  
Sbjct: 1837 GSTQAVANVLGLHRKPHGRV--STSRQVLEKLGSPISELILNHRKLNMQIVKGMQPLIRC 1894

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                R+ G    + A  TGR S      QN+ +                    I      
Sbjct: 1895 CKANRIHGHSITHTA--TGRISMSEPNLQNVAKD-----------------FDIRMGPDS 1935

Query: 360  ASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 RS   + + K+ L+ AD   +E R+LA ++ +   +    + +D++    A   +
Sbjct: 1936 VRISCRSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNH 1995

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFED 474
             P  +V+++ R+  K +   + Y  G +      +   S   L  +QF Q+      + +
Sbjct: 1996 IPEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTESEAQLICEQFHQSYPGIRAYTE 2055

Query: 475  WEQAESHHLWMQD---------------------QYPEFAVKDKLIGTACELVKKAWRAK 513
                 +  L   +                     Q    AV   + G+A ++ K+A    
Sbjct: 2056 KVLKFARKLGYVETITGRRRYLDHINSGEQNLIKQAERQAVNTTIQGSAADIAKRAILDM 2115

Query: 514  HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
             + + + WK L       +Q    I    V  VP    +R  + + + + S
Sbjct: 2116 DKNIGRYWKKLGVE-ENSIQLVLHIHDELVYEVPEAKAKRIAKFLGLTMES 2165



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 32/150 (21%)

Query: 522  KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYL 580
            + L +   C   E   I   +       +    ++ +      +R+L Y + + G   YL
Sbjct: 2023 RSLGDALQCTESEAQLI-CEQFHQSYPGIRAYTEKVLKF----ARKLGYVETITGRRRYL 2077

Query: 581  N-------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------------ATKN 620
            +           Q  R+           +Q  + DI    + +               +N
Sbjct: 2078 DHINSGEQNLIKQAERQA------VNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVEEN 2131

Query: 621  GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
               +VL +HDE+V E P+     +     L
Sbjct: 2132 SIQLVLHIHDELVYEVPEAKAKRIAKFLGL 2161


>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
          Length = 665

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 113/337 (33%), Gaps = 62/337 (18%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE  + V  N  ++R +     GI++    +  T + +     +        LA
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             + +H T   E   GK      F + ++                +  G Y   D + T 
Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L  ++ P             + E  L  +   I   G +ID  ++    E +     +L
Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++   ++       S  T  L+  LF   GI  +  + G   S  S   + +LA D  L 
Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQF 311
           ++      + KL     + L   ++   GR+  +   
Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQ 661


>gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 942

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 104/359 (28%), Gaps = 66/359 (18%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVD 255
           G   D  +V      + +E   ++ +  +   G  +  +      +   L+   G     
Sbjct: 494 GLPFDASVVEAAAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQVADVLYGFLGFPPPS 553

Query: 256 MSEGTLKSILSHSNITQLAKD-------LILNRLASSGSAILKL----NTLSEAVSSDGR 304
            +          +    + +D         L  +     A+ +     N  +    +DGR
Sbjct: 554 SNAMQGAKTAQLTTKDDVLRDFASRPNAHPLPGMVLRYRAVTRAVAMCNAYASLTDADGR 613

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           LR        + TGR S      Q + R E S     + +   N               +
Sbjct: 614 LRCEWNN-TRTATGRLSSSNPNLQAVGRAEHSAGAGEEELATFN---------------L 657

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA---NGEDIYVTTYAKAFNTPI 421
           R+  +A  GK L+  D + IE R LA +  ++          +G D++       +N   
Sbjct: 658 RAAFVAPPGKVLLAVDYSQIELRTLAHLTRDEKLCGVLRVAGDGGDVFKM----IWNLSR 713

Query: 422 DK-----VSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTF 472
           D      VS E R   K     + Y  G        +         +    +       F
Sbjct: 714 DAPRDAPVSAEDRDKAKRTVYGVLYGQGVAGLAEKLACSTDAAKGLIDALFRTFPGLKRF 773

Query: 473 -----EDWEQAESHHLWMQDQYP----------------EFAVKDKLIGTACELVKKAW 510
                E     +S  L      P                  A+   + GTA +++K A 
Sbjct: 774 VVATKERARATKSAELPSGRHRPLPGIDAAAASARAEAERKAMNTLVQGTAADMMKTAM 832


>gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei
           TREU927]
 gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei]
 gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 958

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 137/447 (30%), Gaps = 105/447 (23%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL----TD 229
              L      E+ + ++   +   G+ ++L  V   +   A++ +KL  +   +    T+
Sbjct: 446 HGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTN 505

Query: 230 GIIRSSRQ-TYALRMYLFLITGIDLVDMSEGTLKSIL----------SHSNITQLAKDLI 278
             I+S+     AL   L L   +        T  + L          S   +  LA+   
Sbjct: 506 FNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGKLSTSEETLRILARHHE 565

Query: 279 LNRLASSGSAILKL------------------------------------NTLSEAVSSD 302
             R+  +   + KL                                    N      +  
Sbjct: 566 FPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQGKEAIPNASDRHKAKW 625

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE------------------RSEEILTQTI 344
            +L   L   G + TGR +      Q LPR                     + E +   +
Sbjct: 626 AKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTNDADSENGNNENINGDV 684

Query: 345 QALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            A + G  E+           +R C+ A +G  LV  D   +E RVLA ++G+   I   
Sbjct: 685 NAADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVL 744

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
               DI+ +     F      V+ E+R++ K +   + Y  G    + +A   G+ ++Q 
Sbjct: 745 TKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAG---PRGLAQQMGVSVEQA 799

Query: 463 ---SQNVKSTSTFED-------------------------WEQAESHHLWMQDQYPEFAV 494
              S   KS     D                                 L  +      A 
Sbjct: 800 LRVSSLFKSCFPTVDAYQRRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAF 859

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLW 521
              + G+A +++K    A  + VLQ  
Sbjct: 860 NTVVQGSAADVMKLGMIAVEREVLQPH 886


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 92/590 (15%), Positives = 179/590 (30%), Gaps = 129/590 (21%)

Query: 36  AWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW- 93
           A D + + L D  +      +DL  +        +AHN++F+    ++    +I    W 
Sbjct: 44  ARDRDTIVLIDCFQLDKGDWADLRWFFSTPDRFWLAHNAVFDLGWLQEH---NIYPAGWV 100

Query: 94  ICTSVLA--RTNGLPSSLKNACLA--LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
            C+ + +   TNGLP+S             + L+K ++         +  ++    D   
Sbjct: 101 RCSMLASRLLTNGLPNSKHGLDSVVKRYLKKELSKEQQRSDWSGDLSEEQLEYAANDVAA 160

Query: 150 ANHV----------------------------QAWQLFGEYCKRD-----VEATRELFK- 175
              +                            Q W+    +   +     V+   ++ + 
Sbjct: 161 LMELDPILEHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKVDYEYDITQL 220

Query: 176 ----------------RLIPLSDGERDLWLLDQTINDRGY-------RIDLDLVLKLQEL 212
                           +L    D +R  +L D+      Y         +L+ +      
Sbjct: 221 KQDFLMLLDKALPEEHKLPRERDEQRISYLKDKVTEMGHYDKAYEKWYAELESLENSTTF 280

Query: 213 IAQERKKLDEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
             + + +    +   K     I S +Q       +      D       + +++ S++  
Sbjct: 281 NTRSKDEGSIRLGTKKYAGFNINSPKQLVEKLTVILGEPPRDANGKPSASRQALRSYAAD 340

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            ++ +  +  +       +  + ++ E +   G +R +    GA  +GR S      Q +
Sbjct: 341 HEVIQIYLEWKRCEKRRQM--IESIQEKMDGTGFVRASYMQLGA-ESGRMSCIKPNNQQI 397

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR                                RSC+ A  G  LV AD   +E R+ A
Sbjct: 398 PRD----------------------------KQFRSCVEAPEGWLLVDADFGQMELRLAA 429

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +A ++  I AF  GED +  T                R   K     L Y  GA   + 
Sbjct: 430 AVADDERMIAAFQAGEDPHTVTAKAI-GCD--------RQTAKSANFGLLYGSGATGLRN 480

Query: 451 MASHCGLDLQQF------------SQNVKSTSTFEDWEQAESH-HLWMQDQYPEFAVKDK 497
            A   G+ + Q              Q V         E  E+  + W   + P   ++  
Sbjct: 481 YAGGMGITMTQERAADIRNEWLGVFQGVAKWQRDNAKEADETQDYKWAATRVPISGMRRY 540

Query: 498 LIGTACELVKKA---WRAKHQGVLQ-----LWKDLTEGFACVVQEGGSIS 539
           L G    L  +     +     +L+     LW  + E     V+   ++ 
Sbjct: 541 LQGDMNRLTVRCNTPIQGAGAAILKCALGNLWPKVKEAGEDTVRIAAAVH 590


>gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans]
 gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans]
          Length = 967

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/483 (14%), Positives = 139/483 (28%), Gaps = 120/483 (24%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  + L    +   G+      + +L + +    KKL+  I +               
Sbjct: 561 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSRFNLGSSQAVA 620

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           ++      G+        T    +    +      LIL     S      +  L E   +
Sbjct: 621 KV-----LGLHRKARGRVTTSRQVLEK-LNSPISHLILGYRKLSCLLAKSIQPLMECCQA 674

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+ G    Y A  TGR S      QN+ ++                   I       +
Sbjct: 675 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FCIQVGSDAVN 714

Query: 362 DCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              RS  +     + L+ AD   +E R+LA ++ +   ++   + +D+++   A      
Sbjct: 715 ISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIK 774

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             +V+ + R   K +   + Y  G    +++A       Q+                   
Sbjct: 775 ESEVTPDLRNSTKQVCYGIVYGMG---MRSLAESLNCSEQE------------------- 812

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                                   ++   +   ++G+                       
Sbjct: 813 ----------------------ARIISDQFHEAYKGIRDY-------------------T 831

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRV N       R K  V  +    R L  ++   +         +  R+         +
Sbjct: 832 RRVVN-----FARGKGFVETITGRRRYLEMTNSDMEHL------KKAERQA------VNS 874

Query: 601 IVQAISRDILCEGMKNATK-------------NGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            +Q  + DI    +    K                D+V+ +HDE++ E P      +  +
Sbjct: 875 TIQGSAADIAKNAILKMEKNIERYREKLALGDKSVDLVMHLHDELIFEVPTGKAKKIAKV 934

Query: 648 CSL 650
            S+
Sbjct: 935 LSI 937


>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
          Length = 2059

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 119/369 (32%), Gaps = 52/369 (14%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  + L    +   G+      + +L + +    KK++  I +               
Sbjct: 1652 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGSSQAVA 1711

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            ++      G+        T    +    +      LIL     SG     +  L E   +
Sbjct: 1712 KV-----LGLHRKAKGRVTTSRQVLEK-LNSPISHLILGYRKLSGLLAKSIQPLMECCQA 1765

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+ G    Y A  TGR S      QN+ ++                  +I     +  
Sbjct: 1766 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FSIQVGSDVVH 1805

Query: 362  DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               RS  + ++  + L+ AD   +E R+LA ++ +   ++   + +D+++   A      
Sbjct: 1806 ISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIE 1865

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTFEDWE 476
              +V+++ R   K +   + Y  G +              +   QF Q  K    +    
Sbjct: 1866 ESEVTQDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRV 1925

Query: 477  QAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
               +H                        +++Q    AV   + G+A ++ K A     +
Sbjct: 1926 VNFAHSKGFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEK 1985

Query: 516  GVLQLWKDL 524
             + +  + L
Sbjct: 1986 NIERYREKL 1994



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 24/113 (21%)

Query: 551  MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                K  V  +    R L   +   +    N A  Q             + +Q  + DI 
Sbjct: 1928 FAHSKGFVETITGRRRYLENINSDVE-HLKNQAERQ----------AVNSTIQGSAADIA 1976

Query: 611  CEGMKNATKN-------------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
               +    KN               D+V+ +HDE++ E P      +  + SL
Sbjct: 1977 KNAILKMEKNIERYREKLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSL 2029


>gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 924

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 124/415 (29%), Gaps = 85/415 (20%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT----DGII 232
           L      E+ + LL   +   G+ ++L  V   +       ++L     KL     +  +
Sbjct: 456 LPAFLKQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNM 515

Query: 233 RSSRQ-------TYALRMYLFLI--TGIDLVDMS-EGTLKSILSHSNITQLAKDLILNRL 282
           ++  +          L  +L      G D   ++   + K   S   +  LA    L RL
Sbjct: 516 QNLDECRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLRLLAPHHELPRL 575

Query: 283 ASSGSAILKL-----NTLSEAVSS---------DGRL-----------------RGTLQF 311
             +     KL       + E             D R+                       
Sbjct: 576 LIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQ 635

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G + TGR S      QNLPR +   E               ++P        R C    
Sbjct: 636 EG-TDTGRLSCVEPNLQNLPRSKAIAE------------NDNSEPYEAEMATFRRCFAVP 682

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  L+  D   IE RV+A ++ +   + A  N  D++       F      V+ E+R +
Sbjct: 683 IGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEERTL 740

Query: 432 GKVMELALGYQGGAKVFKTMA--------------SHCGLDLQQFSQNVKS--------- 468
            K +   + Y  G +   T                      ++++ + V           
Sbjct: 741 AKRVVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQRRVIDQCRTDGFVR 800

Query: 469 --TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             T             +  +      A    + G+A +++K    A  + VLQL+
Sbjct: 801 TMTGRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAVERDVLQLY 855


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 97/638 (15%), Positives = 175/638 (27%), Gaps = 187/638 (29%)

Query: 114 LALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRAN-----------------HVQ 154
             L F E   K  E KA        K          T+A                     
Sbjct: 67  ETLKFKEDTKKYNEEKANNKYSVLVKPVKPKKGKAPTKAELAYEPLANEVDGGNFNYDWI 126

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDL 203
             ++   Y   D +    +   L  +    + +W           +    I   G     
Sbjct: 127 PLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIESNGIYAQT 186

Query: 204 DLVLKLQELIA-------------QERKKLDEDIVKLTDGIIR----------------- 233
           D +  + E                 E  +L+E  ++L +  +                  
Sbjct: 187 DYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAIPPAKRDKDIAKLR 246

Query: 234 ---------SSRQTYALRMYLFLITGIDLV-------------------------DMSEG 259
                    +          L+ I GI L                             + 
Sbjct: 247 DKYKKKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWEDYKTDKK 306

Query: 260 TLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            L  I+ H    +  A  L+ + L  +         L+   + DGR+ G+    G + T 
Sbjct: 307 ALNYIVDHFPDQKAFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATG-TETT 365

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      Q LP                    +            R    A     L+ 
Sbjct: 366 RLSSNNPNMQQLP-----------------AKTSDPKRFDYQYPIKRMFQTAFENGALLQ 408

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + +E R+LA  AG++   +AF +G D++  T +  +  P+DKV  E R   K +   
Sbjct: 409 LDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAEFRKKAKAVNFG 468

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y    +   + A    + +++          F+ +   + +     D+    A++D  
Sbjct: 469 IAYG---ETPFSFAPKHDMSVEEAEDI------FQRYFANKPNIKTFIDETHREALRDGF 519

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           + T                                         +    RL+     +D 
Sbjct: 520 VDT-----------------------------------------LQGHRRLIRDAFSKDK 538

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I   + R+ V + ++G  +Y    +   + +                  I    MK+  
Sbjct: 539 QIQNGALRKSVNTKIQGTGAYCTNMSLIYIDQY-----------------IQDNNMKS-- 579

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNP 655
                +VLTVHD IV + P      +  +C  +M   P
Sbjct: 580 ----KLVLTVHDSIVVDCPPEEVEIMARVCKTIMENLP 613


>gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 124/415 (29%), Gaps = 85/415 (20%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT----DGII 232
           L      E+ + LL   +   G+ ++L  V   +       ++L     KL     +  +
Sbjct: 459 LPAFLKQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNM 518

Query: 233 RSSRQ-------TYALRMYLFLI--TGIDLVDMS-EGTLKSILSHSNITQLAKDLILNRL 282
           ++  +          L  +L      G D   ++   + K   S   +  LA    L RL
Sbjct: 519 QNLEECRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRL 578

Query: 283 ASSGSAILKL-----NTLSEAVSS---------DGRL-----------------RGTLQF 311
             +     KL       + E             D R+                       
Sbjct: 579 LIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQ 638

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G + TGR S      QNLPR +   E               ++P        R C    
Sbjct: 639 EG-TDTGRLSCVEPNLQNLPRSKAIAE------------NDNSEPYEAEMATFRRCFAVP 685

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  L+  D   IE RV+A ++ +   + A  N  D++       F      V+ E+R +
Sbjct: 686 IGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEERTL 743

Query: 432 GKVMELALGYQGGAKVFKTMA--------------SHCGLDLQQFSQNVKS--------- 468
            K +   + Y  G +   T                      ++++ + V           
Sbjct: 744 AKRVVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQRRVIDQCRTDGFVR 803

Query: 469 --TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             T             +  +      A    + G+A +++K    A  + VLQL+
Sbjct: 804 TMTGRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAVERDVLQLY 858


>gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus]
          Length = 2620

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 79/536 (14%), Positives = 155/536 (28%), Gaps = 110/536 (20%)

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            S  E         +   G           ++++  +  +++    +L      S      
Sbjct: 2097 SKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETKAYQLAGHSF-SLTSPDD 2155

Query: 241  LRMYLFLITGID-----LVDMSEGTLKSI-----------------LSHSNITQLAKDLI 278
            +   LFL   +       V  ++ TL                     +   + +L     
Sbjct: 2156 VAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQFSTTKDVLEKLKPLHP 2215

Query: 279  LNRLASSGSAI-----LKLNTLSEAVSSDG-----RLRGTLQFYGASRTGRWSGCVFQPQ 328
            L  L      I       +  L      +      R+    Q + A  TGR S      Q
Sbjct: 2216 LPGLILEWRRINSAISKVVFPLQREKRFNSALGMERIYPVSQTHTA--TGRVSFAEPNIQ 2273

Query: 329  NLPRQERSEEIL-----------------TQTIQALNRGETIADPLGLASDC-------- 363
            N+PR    E  +                 ++++    RG        L S          
Sbjct: 2274 NVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGRKHSSVLPSGVNTWTADRT 2333

Query: 364  ----------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R   +   G  ++ AD   +E R+LA  + +   I+AF  G D++ +  
Sbjct: 2334 ERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRDCRLIEAFNKGADVFKSIA 2393

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A+      + V    R   K +   + Y  GA   K++    G+D  + +  ++S  +  
Sbjct: 2394 AEWKMIDSEAVGDSTRQQAKQICYGIIYGIGA---KSLGEQMGIDDNKAANYIESFKS-- 2448

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             +   +                  ++G    L   A R  +  +        +     VQ
Sbjct: 2449 RYTGIQKFLKETVSNCRRDGFVQTILGRRRYL--PAIRDSNPYIKA--HAERQAVNTTVQ 2504

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
               +   +               ++   L +   +  S    + S+    T +L R+R  
Sbjct: 2505 GSAADIVKTATV-----------NIQRRLEALSSVNKSHGHLENSFQRDKTGRLSRKRN- 2552

Query: 594  GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                         R++L          G+ I L +HDE++ E  +     V  +  
Sbjct: 2553 -------------REMLHPI-----SGGFFI-LQLHDELLYEVAEDDVIQVAQIVK 2589


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (44%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              L      +RS   A  GK LV++D + IE R+ +   G++  I+AF  G D++  T 
Sbjct: 1   DPNLQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYTA 60

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +       ++VSKE+R + K +   L Y   AK     A   G+DL            FE
Sbjct: 61  SILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFFE 120

Query: 474 DWEQAESHHLWMQDQYPEF 492
            +   ++ H  ++ +  EF
Sbjct: 121 YFVSFKNWHEKVKRELKEF 139


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 136/461 (29%), Gaps = 81/461 (17%)

Query: 141 DSPPYDCTRANHVQAWQLFGEY---CKRDVEATR----ELFKRLIPLSDGERDLWLLDQT 193
              P + T       W++  ++      D+        E   +       E  +  L   
Sbjct: 154 HKRPREATSLQESHPWRMLVDHDLPESSDLAVALSSRVESHGQTAVALFQELPVARLLTL 213

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           ++  G   D  ++ + +  +     KL+ +   L    +        +   L+   G+  
Sbjct: 214 MSVTGAPFDHSIMQRWRSDLEVTVAKLEREAQALVKKEV-LMTSPAQVAALLYDDLGLQP 272

Query: 254 V--DMSEGTLKSILS-----HSNITQLAKDLILNRLASS-------------GSAILKLN 293
                S  T   +LS     H  ++ + K   + +L ++                +L+  
Sbjct: 273 PAGRRSRSTGDEVLSMMVDQHPVVSIIRKHRQVAKLITTYVDTIRSLPESSPKPGLLEYF 332

Query: 294 TLSEAVSS------DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                VS         RL         + TGR S      QN+PR    E          
Sbjct: 333 RPQNGVSESCNFLGKNRLYTVWN-QTMTVTGRLSSSNPNLQNIPRSHEFE---------- 381

Query: 348 NRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-N 404
                      L    +R   I+   +   LV  D   +E RVLA   G     ++F+ +
Sbjct: 382 ----------DLGVISLRKAFISPILDSHCLVSVDYRQVEIRVLAHFVGPGALRRSFSVD 431

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G DIY    A       + V+KE+R   KV  LAL Y  G  +            Q F +
Sbjct: 432 GADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSGIHLLARQMGVTTTVAQGFKR 491

Query: 465 NVKSTSTFEDWEQAESHH----------------------LWMQDQYPEFAVKDKLIGTA 502
                    +       H                        +  +   F +   + G+A
Sbjct: 492 QFNYAFPELERWMVRVWHAAKGKKYVETICKRRRKIELDGGELTSEAKRFCINSIIQGSA 551

Query: 503 CELVKKAW-RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            +++K A  +  H      WK         + +   +S  +
Sbjct: 552 ADIMKSAMVQIAHALDEAQWKRGRPQLLLSIHDEFVLSCHQ 592


>gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis]
          Length = 2117

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 129/435 (29%), Gaps = 103/435 (23%)

Query: 154  QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            + WQL     + D        + L PL   E  L  + Q                     
Sbjct: 1641 KMWQLLRSRLRGD--------ELLPPLWRTEMPLEPMLQ--------------------- 1671

Query: 214  AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-TLKSILSHSNITQ 272
             +  ++L+            S      +   LF +  +     ++        +   +  
Sbjct: 1672 -RRIEELEGMAHAEAGQEF-SLSSPQEVSRILFEVLKLAPPPCAKDLKSGGYSTGQEVLL 1729

Query: 273  LAKDLILNRLASSGSAILKLN-------------------TLSEAVSSDG-----RLRGT 308
               +  + RL      +  L                      +EAVS  G     R+RG+
Sbjct: 1730 ELHEHPIARLIFEHRKLRTLLNRQGGPGLLPFVQGFKMHLAYAEAVSYPGGLVLKRIRGS 1789

Query: 309  LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            +       T R +      Q +P+    + +LT     L    + A      +  +R+  
Sbjct: 1790 INQ-----TCRLAMDEPNLQCVPKPRAYKVLLTPG--ELGSAASGASAHADRTANLRAAF 1842

Query: 369  IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDK---- 423
            +A  G  L+ AD   IE R++A  +G+    + F+  G D +    A+    P ++    
Sbjct: 1843 VAPPGCVLLSADYRQIEFRLMAHFSGDPGLARVFSEDGADPFRLLAAQWLGAPQEQARPR 1902

Query: 424  ---------VSKEQRAIGKVMELALGYQGGAKVFKT----MASHCGLDLQQFSQNVKSTS 470
                     V+++QR   K +   L Y  GA           +      ++F  ++    
Sbjct: 1903 GWLGRGRRGVTQQQRDHAKQLTYGLLYGMGAAKLADELGCSVAEARTAQEKFRASMPGIE 1962

Query: 471  TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509
             ++    AE   L   +                          A      G+A +L K A
Sbjct: 1963 AWQARVVAECRRLGYVETLAGRRRYLPNINCRDGRKRAAAERQAKNTVCQGSAADLAKAA 2022

Query: 510  WRAKHQGVLQLWKDL 524
              A H   L  W  L
Sbjct: 2023 MVAIHT-RLAAWLAL 2036


>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
 gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
          Length = 2059

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 118/369 (31%), Gaps = 52/369 (14%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  + L    +   G+      + +L + +    KK++  I +               
Sbjct: 1652 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGSSQAVA 1711

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            ++      G+        T    +    +      LIL     SG     +  L E   +
Sbjct: 1712 KV-----LGLHRKAKGRVTTSRQVLEK-LNSPISHLILGYRKLSGLLAKSIQPLMECCQA 1765

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+ G    Y A  TGR S      QN+ ++                  +I     +  
Sbjct: 1766 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FSIQVGSDVVH 1805

Query: 362  DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               RS  + ++  + L+ AD   +E R+LA ++ +   ++   + +D+++   A      
Sbjct: 1806 ISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIE 1865

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTFEDWE 476
              +V+++ R   K +   + Y  G +              +   QF Q  K    +    
Sbjct: 1866 ESEVTQDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRV 1925

Query: 477  QAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
               +                         +++Q    AV   + G+A ++ K A     +
Sbjct: 1926 VNFARSKGFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEK 1985

Query: 516  GVLQLWKDL 524
             + +  + L
Sbjct: 1986 NIERYREKL 1994



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 24/113 (21%)

Query: 551  MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
              R K  V  +    R L   +   +    N A  Q             + +Q  + DI 
Sbjct: 1928 FARSKGFVETITGRRRYLENINSDVE-HLKNQAERQ----------AVNSTIQGSAADIA 1976

Query: 611  CEGMKNATKN-------------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
               +    KN               D+V+ +HDE++ E P      +  + SL
Sbjct: 1977 KNAILKMEKNIERYREKLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSL 2029


>gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum]
          Length = 989

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 78/548 (14%), Positives = 161/548 (29%), Gaps = 120/548 (21%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           + +       +N    R   K  + +DI  K+ I    +                     
Sbjct: 428 MENPNSYKYLYNC---RAQIKMLMSMDIHVKKGIMDPRVGAWL--------------LDP 470

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
              K      L+  F +    S     T  + +  +     +C R     ++LF R    
Sbjct: 471 DKYKDTTLDTLVREFSQDKKLS-----TNVDELNHYDRSFHHCYRSFVLMKQLFTRFHFN 525

Query: 177 --LIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             L  + ++ E  L ++   +   G   D       +  + Q+ + ++     +   +  
Sbjct: 526 RDLYKIFNEMEMPLLVILAKMEYNGIGFDDATCQNTKYEVLQKLQYIEVKARLMVPDLKF 585

Query: 234 SSRQTYALRMYLFLITGI---------DLVDMSEGTLKSILSHSNITQLA-KDLILNRLA 283
           S      +   L+ +  +          +V     T  +IL      + A   +++    
Sbjct: 586 SMSSKEDMSNILYNVLRVVDIPKANRGKIVKRHHSTKAAILEAVPEEKAAFPKMLIEWRK 645

Query: 284 SSGSAILKLNTLSE--AVSSD---GRLRGTLQFYGASRTGRWSGCVFQPQ---------- 328
            S   +  ++ L +    + D    R+  T+       TGR +      Q          
Sbjct: 646 LSHHLLNYVHVLFKFGYYNPDYEMMRIYTTIMQTNVP-TGRLAMTYPNLQSIANAFTFRE 704

Query: 329 -------------------------------NLPRQERSEEILTQTIQALNRGETIADPL 357
                                          N+          +++I +L+  E   D  
Sbjct: 705 SPISFSDVSTNNVSKASSSASQHCSPPYDHHNVTVDYSPSPNESKSIGSLSTLELKEDNC 764

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKA 416
            L +  +R   I   G   + AD + IE R+LA ++ +   +    N   D + T     
Sbjct: 765 RLITVRIRDSFIPRKGYLFLSADYSQIELRILAHLSEDKLLLDGLNNPDFDFFKT----M 820

Query: 417 F-----NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVK 467
           F      T I+ V+ E+R I K +   + Y  G    A           +  ++     +
Sbjct: 821 FVQMNKGTRIEDVTAEERDIAKELCYGILYGMGTWSLANKLDRDEKEARILKEKLYNTYR 880

Query: 468 STSTFEDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVK 507
               + D  +   H +   + +                       AV     GTA +++K
Sbjct: 881 DLIKYIDSVKKRYHQVGYVETFYHRKRFLDNNTRDKVEIEKEKRKAVNSIPQGTAADIIK 940

Query: 508 KAWRAKHQ 515
           +A  +  +
Sbjct: 941 QAMISIDR 948



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDE 631
            +L+  T   +       K   +I Q  + DI+ + M +  +   +      +VL +HDE
Sbjct: 907 RFLDNNTRDKVEIEKEKRKAVNSIPQGTAADIIKQAMISIDRIFEEQKTPALMVLQIHDE 966

Query: 632 IVSETPDTPYFS 643
           ++ E  +     
Sbjct: 967 LLFEVREDSNGR 978


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 90/250 (36%), Gaps = 27/250 (10%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSDGR-LRGTLQ 310
              +  +   L +  +    K+L+      +     +      L   ++   R L G+  
Sbjct: 670 KTDKKAIGYALDNLELKDDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFS 729

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             G + T R S      QNLP                    +  +         RS +  
Sbjct: 730 ETG-TETSRLSSSNPNLQNLPAHT-----------------SDVNKFDYKHPIKRSFVSR 771

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                L+ +D + +E R++     +   +++F NGEDI+  T +  +N P+++V+KE+R 
Sbjct: 772 FENGVLLGSDYSALEMRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQ 831

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   L +        + A    +++ +  +  +    F+     ++    + +   
Sbjct: 832 ATKAVNFGLAFGES---PFSFAGKNNMEVSEAEEIFE--KYFQTKPSVKTSIDNVHEFVQ 886

Query: 491 EFAVKDKLIG 500
           ++   D + G
Sbjct: 887 QYGYVDTMHG 896


>gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 914

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 127/382 (33%), Gaps = 57/382 (14%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E T +L K L  ++     L      +  +G RID + +      +  +  +L + I  
Sbjct: 482 AEKTTDLAKTLRFMT---MPLAPKISEMEYQGIRIDREKLEDFIARVDAKIPELKDRIFS 538

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLIL 279
                I  S  +  L+  LF     + V  ++            +L   N  +  +DL++
Sbjct: 539 SIGRKINLSSSSGDLKRVLFKEKRYEPVKYTKTGDFSTDKNSMEVLYEKNEDEFIRDLLI 598

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R          +N     +  DGRL  +L  +G + T R S      QN P     E  
Sbjct: 599 LRRVEKVRETYFIN-WRGEIEYDGRLHFSLNQHG-TATYRLSANK-GLQNAPA-YLKEID 654

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398
           L                       V+S  +  S    +   D+A  E RVL   + ++  
Sbjct: 655 LN----------------------VKSLFLPDSEEYDIFDLDIANAELRVLCGYSKDETL 692

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV-------SKEQ---RAIGKVMELALGYQGGA--- 445
           I+AF  G DI+  T AK  +   +++       + EQ   R +GK +     Y  GA   
Sbjct: 693 IEAFNQGLDIHSLTAAKISDFTYEEIKAAKEDKTSEQHKLRQLGKKINFGTVYSMGATSL 752

Query: 446 -------KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                     K         L +F +       + +  +A +        Y     +  +
Sbjct: 753 SKQLWAESRIKVSEDEAKQYLNKFFEEYPKVKEYMEKTRAFARAHRFVYTYTGRRRRFPM 812

Query: 499 IGTACELVKKAWRAKHQGVLQL 520
           +G       KA+R      +Q 
Sbjct: 813 LGVDNHQKFKAFRQAINCRIQT 834


>gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii]
 gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii]
          Length = 2508

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 123/436 (28%), Gaps = 104/436 (23%)

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            L PL + E  L  +   +   G  +   ++   +  +    ++L      L  G+     
Sbjct: 1993 LRPLLELEMPLVRILARMEGEGIALAPQVLKDQRGPLEARLRQLAAKAH-LAAGMTFDLN 2051

Query: 237  QTYALRMYLFLITGIDLV---------------DMSEGTLKSILSHSNITQLAKDLILNR 281
                +   LF    +                        L+    H  I  L     L++
Sbjct: 2052 SPKDVSEVLFQHLNLPPPPCAFSNQNQRHPSTKKEVLEELEESTHHPIIRLLLDYRTLHK 2111

Query: 282  LASSGSAILKLNTLSE---------------------------AVSSDG--------RLR 306
            L +     L      +                           AV   G        RL 
Sbjct: 2112 LLTGFVETLYHTAKGQWQRQQHELERCQGQGQQPQRGGAATGGAVKPGGPGPVPDVIRLC 2171

Query: 307  GTLQFYGASRTGRWSGCVFQPQNLPRQ--------ERSEEILTQTIQALNRGETIADPLG 358
            GT   + ++ TGR +      Q +PR         + S+        A   G  +    G
Sbjct: 2172 GTW-LHTSTATGRLAMDEPNLQTVPRPVEYTFMASQLSQASAGTPPAAGADGAELKLLPG 2230

Query: 359  LASDC--------------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               +RS  +A  G  ++ AD   IE R++A  + +        N
Sbjct: 2231 EERGGGAGEGGRSVTLHFNLRSAFVAPPGYMVLAADYKQIELRLMAHFSSDAALCALLRN 2290

Query: 405  -GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459
              +D ++   A+    P+++V+ E R   K +   + Y  G    A+      +  G   
Sbjct: 2291 PAQDPFILLAAEWKKVPVEQVTPEVRVQAKRLAYGMLYGMGTNTLAQELGVSVAEAGELS 2350

Query: 460  QQFSQNVKSTSTFEDW-------------------------EQAESHHLWMQDQYPEFAV 494
              F + + S   +                            E+A       + Q    AV
Sbjct: 2351 DNFRRAIPSVDRWMREVVEAVRSCGYTTTLMGRRRYYSRINERASKDARSARAQAERQAV 2410

Query: 495  KDKLIGTACELVKKAW 510
                 G+A +L+K A 
Sbjct: 2411 NTVCQGSAADLIKAAM 2426


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 91/645 (14%), Positives = 180/645 (27%), Gaps = 154/645 (23%)

Query: 49   EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
            + + +      Y   E++  V HN  F+R +F      +I  K +   ++        + 
Sbjct: 755  QGNEILEVFRPYFESESIYKVWHNYGFDRHIF---YNHNIDVKGFGGDTLHMARLWDAAR 811

Query: 109  LKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----------PPYDCTRAN--HVQAW 156
                  +L             ++   F K  I +          PP +  + +  H++ W
Sbjct: 812  NGRGGYSLEGLSKELLDNHKTSIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETW 871

Query: 157  QLFGEYCKRDVEATRELFKRLI-PLSDGER-----------DLW----LLDQTINDRGYR 200
                EY   D E T  L + L   L +              +LW     L   +  RG +
Sbjct: 872  ---IEYSSLDAELTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMK 928

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRSSRQTYALRMYLFLITG----- 250
            +D++ +  ++ +  ++ +   +   +       +    +      ++  LF  T      
Sbjct: 929  VDIEHLKTVEGVATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTK 988

Query: 251  ------------------IDLVDMSEGTLKSILSHSNITQ--------LAKDLILNRLAS 284
                               +     +     +LS   +           A D    R  +
Sbjct: 989  EEMPLEREFETENTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLA 1048

Query: 285  SGSAILKLNTLSEA---VSSDG-----------RLRGTLQFYGASRTGRWSGCVFQPQNL 330
               +  K   +       S D            +   +L   G+  T   S  +   +  
Sbjct: 1049 GNPSKGKYGKIFNHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPLQKLC 1108

Query: 331  PRQERSEEILTQTIQALNRGETIAD-----PLGLASDCVRSCIIASNGKKLVVADLAGIE 385
                R    +    +         +      L      +R       G  LVVAD   +E
Sbjct: 1109 DSNHRVHTSVNVNTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLE 1168

Query: 386  ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE------------------ 427
             R+LA I      I AF  G D +  T    +    + V +                   
Sbjct: 1169 LRLLAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGEPPKPLLK 1228

Query: 428  -----QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE-Q 477
                 +R   K +  ++ Y     G +K +          L ++  +      ++    Q
Sbjct: 1229 DSFGAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPEVLLWQRKTIQ 1288

Query: 478  AESHHLW--------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514
              + H W                    M+      ++   L G A ++V KA        
Sbjct: 1289 IANTHKWTRTLMGRYRMLPDIDNPAKGMKGHSERASINTPLQGGAADIVMKAMLMIEEDK 1348

Query: 515  -------QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                   Q ++Q+  +L       + EG    A+    +   +M 
Sbjct: 1349 RLKELGFQLIMQIHDEL-------ILEGPEQHAKEAREIVMRLMS 1386



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 125/410 (30%), Gaps = 94/410 (22%)

Query: 252  DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
               D  +G  + I +   IT L +   +  L SS      +  L +   S+ R+  ++  
Sbjct: 1066 KSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSF-----IIPLQKLCDSNHRVHTSVNV 1120

Query: 312  YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
               + TGR S      QN P  E+                            +R      
Sbjct: 1121 N--TETGRLSSKRPNLQNQPALEKDRY------------------------KIRKAFTCE 1154

Query: 372  NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
             G  LVVAD   +E R+LA I      I AF  G D +  T    +    + V +     
Sbjct: 1155 PGNTLVVADYGQLELRLLAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRG---- 1210

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                ++ L + G  +  K +        ++ ++ +  +  +       S    +  +   
Sbjct: 1211 ----DVLLEWDGDGEPPKPLLKDSFGAERRKAKTLNFSIAYGKTAHGLSKDWGVTLK--- 1263

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                        +     W +    VL LW            +  +I         R +M
Sbjct: 1264 ----------EAQETLDRWYSDRPEVL-LW------------QRKTIQIANTHKWTRTLM 1300

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                          R  +  D+      +   +    R            +Q  + DI+ 
Sbjct: 1301 -------------GRYRMLPDIDNPAKGMKGHS---ERASINTP------LQGGAADIVM 1338

Query: 612  EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
            + M    ++      G+ +++ +HDE++ E P+        +   LM+  
Sbjct: 1339 KAMLMIEEDKRLKELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNP 1388


>gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia]
 gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia]
          Length = 2006

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 125/415 (30%), Gaps = 52/415 (12%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  + L    +   G+      + +L + +    KKL+  I +               
Sbjct: 1600 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSRFNLGSSQAVA 1659

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            ++      G+        T    +    +      LIL     S      +  L E   +
Sbjct: 1660 KV-----LGLHRKAKGRVTTSRQVLEK-LNSPISHLILGYRKLSCLLAKSIQPLMECCQA 1713

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+ G    Y A  TGR S      QN+ ++                   I       +
Sbjct: 1714 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FCIQVGADAVN 1753

Query: 362  DCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               RS  +     + L+ AD   +E R+LA ++ +   ++   + +D+++   A      
Sbjct: 1754 ISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIK 1813

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTFEDWE 476
              +V+ + R   K +   + Y  G +              +   QF +  K    +    
Sbjct: 1814 ESEVTPDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARILSDQFHEAYKGIRDYTRRV 1873

Query: 477  QAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELVKKAWRAKHQG 516
               +      +                         AV   + G+A ++ K A     + 
Sbjct: 1874 VNFARGKGFVETITGRRRYLEMINSDMEHLKKAERQAVNSTIQGSAADIAKNAILKMEKN 1933

Query: 517  VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            + +  + L  G   V      +    +  VP    ++  + + I + S  +L   
Sbjct: 1934 IERYREKLALGDKSVDLVMH-LHDELIFEVPTGKAKKIAKVLSITMESCVKLSVP 1987


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 145/426 (34%), Gaps = 82/426 (19%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNG-- 104
            +  A+   + ++L DE V  +AHN  F+  +  +     I  + W   T ++A      
Sbjct: 339 AKAEALQGQVKRFLEDERVRKLAHNLKFDHQVSAR---EGIEVRGWLHDTQLMAFFADEN 395

Query: 105 -LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            +  SL + C  +   E     +     I +     +D PP D   A+          Y 
Sbjct: 396 MMSKSLDD-CTRVWVPEMAGYADNFNMAIDK--SKMMDVPPDDILDADGKVVQYGMRNYA 452

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTI------------NDRGYRIDLDLVLKLQE 211
             D +A   L +RL  +   +   +   + I               G  +D + +  L +
Sbjct: 453 GGDTDACLRLAQRLDKILREDPRQYQCYRRIQMPAIIAFAKVVERYGLSVDKEHLRSLAD 512

Query: 212 LIAQERKKLDEDIVKLTDGIIR----------SSRQTYALRMYLFLITGIDLVDM--SEG 259
            +AQ      ++IV+L    +R          S  +   +R  LF   G  L     ++ 
Sbjct: 513 QVAQYTDAKYDEIVRLIPPALRRDYLRRGEEISFTRDVVMRDILFGKKGFGLTPKVFTKS 572

Query: 260 TLKSILSHSNITQLAKDLILN---------RLASSGSAILKLNTLS-------------- 296
           T K   +    +   KD +           R  +     LK   L               
Sbjct: 573 TAKLPPAQRVPSVSTKDHMPYFEDAPGNAGRFVTGYIDFLKQQKLITTYIGSEEKQSGFW 632

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + ++ DG +  + + + A+ TGR +      QN P++ R  +                  
Sbjct: 633 QYIAPDGAIYPSYKLH-ATVTGRSASDNPNGQNFPKRGRFAKSYN--------------- 676

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                        A  G KLV ADL+ IE R+ AW+A E   ++ +    DI+ +T A  
Sbjct: 677 ---------KVFKARPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGAAT 727

Query: 417 FNTPID 422
                +
Sbjct: 728 AGWTDE 733


>gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 122/415 (29%), Gaps = 85/415 (20%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT----DGII 232
           L      E+ + LL   +   G+ + L  V   +       ++L     KL     +  +
Sbjct: 459 LPAFLKQEKRISLLCAAMKLNGFPVKLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNM 518

Query: 233 RSSRQ-------TYALRMYLFLI--TGIDLVDMS-EGTLKSILSHSNITQLAKDLILNRL 282
           ++  +          L  +L      G D   ++   + K   S   +  LA    L RL
Sbjct: 519 QNLEECRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRL 578

Query: 283 ASSGSAILKL-----NTLSEAVSS---------DGRL-----------------RGTLQF 311
             +     KL       + E             D R+                       
Sbjct: 579 LIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGECSDKKDDTPVKWVTLHPNFVQ 638

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G + TGR S      QNLPR              +      ++P        R C    
Sbjct: 639 EG-TDTGRLSCVEPNLQNLPR------------SKVIADNDNSEPYEAEMATFRRCFAVP 685

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  L+  D   IE RV+A ++ +   + A  N  D++       F      VS E+R +
Sbjct: 686 IGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VSVEERTL 743

Query: 432 GKVMELALGYQGGAKVFKTMA--------------SHCGLDLQQFSQNVKS--------- 468
            K +   + Y  G +   T                      ++++ + V           
Sbjct: 744 AKRVVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQRRVIDQCRTDGFVR 803

Query: 469 --TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             T             +  +      A    + G+A +++K    A  + VLQL+
Sbjct: 804 TMTGRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAVERDVLQLY 858


>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei]
          Length = 958

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 136/447 (30%), Gaps = 105/447 (23%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL----TD 229
              L      E+ + ++   +   G+ ++L  V   +   A++ +KL  +   +    T+
Sbjct: 446 HGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTN 505

Query: 230 GIIRSSRQ-TYALRMYLFLITGIDLVDMSEGTLKSIL----------SHSNITQLAKDLI 278
             I+S+     AL   L L   +        T  + L          S   +  LA+   
Sbjct: 506 FNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGKLSTSEETLRILARHHE 565

Query: 279 LNRLASSGSAILKL------------------------------------NTLSEAVSSD 302
             R+  +   + KL                                    N      +  
Sbjct: 566 FPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQGKEAIPNASDRHKAKW 625

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE------------------RSEEILTQTI 344
            +L   L   G + TGR +      Q LPR                     + E +   +
Sbjct: 626 AKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTNDADSENGNNENINGDV 684

Query: 345 QALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            A + G  E+           +R C+   +G  LV  D   +E RVLA ++G+   I   
Sbjct: 685 NAADAGGNESDGPVQEKEVSFIRRCLGVPDGYSLVSLDYEQVELRVLAHLSGDSALISVL 744

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
               DI+ +     F      V+ E+R++ K +   + Y  G    + +A   G+ ++Q 
Sbjct: 745 TKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAG---PRGLAQQMGVSVEQA 799

Query: 463 ---SQNVKSTSTFED-------------------------WEQAESHHLWMQDQYPEFAV 494
              S   KS     D                                 L  +      A 
Sbjct: 800 LRVSSLFKSCFPTVDAYQRRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAF 859

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLW 521
              + G+A +++K    A  + VLQ  
Sbjct: 860 NTVVQGSAADVMKLGMIAVEREVLQPH 886


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 57/144 (39%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              L      +R    A  G   V+AD + IE R+ A   GE   IKAF  G D++  T 
Sbjct: 1   DPNLQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYTA 60

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +       + ++KE+R + K +   L Y   AK     A+  G+DL            F 
Sbjct: 61  SILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFS 120

Query: 474 DWEQAESHHLWMQDQYPEFAVKDK 497
            +E  +  H  ++++  +      
Sbjct: 121 YFEGFKDWHNKVKEELKKTGKSSG 144


>gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana]
 gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana]
          Length = 1548

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/538 (14%), Positives = 137/538 (25%), Gaps = 126/538 (23%)

Query: 140  IDSPPYDCTRANHVQAWQLFGEY-----CKRDVEATRELFKRLIP----------LSDGE 184
                P     AN    W+          C R V  TR L   L            L+  E
Sbjct: 1069 KRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLQALTTIE 1128

Query: 185  RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
              L  +   +   G  ID++  L+ + ++  + + L++   +L             +   
Sbjct: 1129 MPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGMTFSLHN-PADIANV 1187

Query: 245  LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
            LF    + + +          +  +   L +        S              +  D R
Sbjct: 1188 LFGQLKLPIPENQSKGKLHPSTDKHCLDLLRY-------SEWLIAFPYIAFCFFIIKDNR 1240

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            L    +   AS                             +    G  ++          
Sbjct: 1241 L---FELLSAS----------------------VEHEVEFKLDKNGRDVSSDADRYKINA 1275

Query: 365  RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPID 422
            R   +       L+ AD + IE R++A  + +   I   +    D++    AK      D
Sbjct: 1276 RDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAED 1335

Query: 423  KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
             VS   R   K +   + Y  GA     +A        +  + ++S  +   +    S  
Sbjct: 1336 SVSPHDRDQTKRLIYGILYGMGA---NRLAEQLECTSDEAKEKIRSFKS--SFPAVTSWL 1390

Query: 483  LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                    E                  W       L     +     CV           
Sbjct: 1391 NETISFCQEKG----------------WGCY---RLFPLLFVLNAVLCVPLNHI------ 1425

Query: 543  VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           ++I     RR   S +K   +   +   +  R+         ++ 
Sbjct: 1426 --------------FIYIQTLKGRRRFLSKIKFGNAKEKS---KAQRQA------VNSMC 1462

Query: 603  QAISRDILCEGMKNATKN-----------------------GYDIVLTVHDEIVSETP 637
            Q  + DI+   M N                              I+L VHDE+V E  
Sbjct: 1463 QGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVD 1520


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 107/735 (14%), Positives = 207/735 (28%), Gaps = 195/735 (26%)

Query: 37   WDDEP---VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPSKR 92
            + + P   V   D  E +       ++L  +  + V HN  F+R +LF   + +      
Sbjct: 375  YGNGPYVWVDNLDSAEGTL--QLFKEFLESKNYLKVWHNYSFDRHVLFNHGINVQGLGGD 432

Query: 93   W-ICTSVL--ARTNGLPSSLKNACLAL---------------NFSEHLTKMEEG------ 128
                  +   AR      SL++    L                  +  +K +E       
Sbjct: 433  TMHMARLWNTARFQNGGYSLESLTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMPTVE 492

Query: 129  ---------KALIARFCKGSIDSPPYDCTRANHVQA--WQLFGEYCKRDVEATRELF-KR 176
                     K  I      +  +        + +    W       +  V +  E + + 
Sbjct: 493  ELQRFPEFRKRWIRYSVYDAESTWFLHRVLQDKLDQTFWFEKPNGGESQVGSMYEFYREY 552

Query: 177  LIP----LSDGERDLWLLD---------QTINDRGYRIDLDLVLKLQE-LIAQERKKL-- 220
            ++P    L+D ER    +D         Q + DR  R++  ++          ER  L  
Sbjct: 553  IVPFGECLTDIERRGMHVDLEYLAGVEKQALEDR-ARLEKLVLQWASRYCEESERINLYS 611

Query: 221  DEDIVKLTDGIIRSSRQTYALR-----MYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
                 +L      + ++   +        +    G       +   K  ++   +     
Sbjct: 612  AAQKQQLLFAPYFNKKKKEQVLPAERSFEVENTEGFIEEGKQKAKKKRNITIRGLGIPPT 671

Query: 276  DLILNRLASSGSAILK-------------------------------------------- 291
                + L ++ + +LK                                            
Sbjct: 672  HFTASGLPAASAEVLKDLAGHPEANPPQYGRAYGHFEDKEEGAAACVALKALFDISSINT 731

Query: 292  -----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 +  L E   S+ R+  +L     + TGR S      QN P               
Sbjct: 732  MLNNFILPLQELADSNSRVHCSLNLN--TDTGRLSSRKPNLQNQP--------------- 774

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                      +G     +R    A  GKKL+VAD + +E R++A I      I+AF  G 
Sbjct: 775  ---------AMGKDRYKIRDAFTAPPGKKLIVADYSQLELRLMAHITQCKAMIEAFKAGG 825

Query: 407  DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            D +  T    +  P          + K +E                    L      +  
Sbjct: 826  DFHSRTAMGMY--PY---------VAKAVENGEALLEWDHTTGKEPPAPLLK----DKYG 870

Query: 467  KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                  +    + ++         +F V  K    A + ++K +    +G ++ W     
Sbjct: 871  DERKNAKVLNFSIAYGKTAFGLAKDFNVSRKE---AADTLEKWY--SDRGEVRDW----- 920

Query: 527  GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                   +  +I   R     R ++ R++R +   +     +     +G           
Sbjct: 921  -------QKKAIETARTFGYTRTLLGRYRR-LPDAMLRDDSMTSKKARGHA--------- 963

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
              R            +Q  + D++ + M     +      G+ +V  +HDEI+ E P+  
Sbjct: 964  -ERAAINTP------IQGAAADVVMQAMLQVHHSPRLRELGWGMVSQIHDEIIVEGPEES 1016

Query: 641  YFSVGTL-CSLMTKN 654
                  L   LM   
Sbjct: 1017 VDEAMKLVVHLMENP 1031


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 115/365 (31%), Gaps = 78/365 (21%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +  DGR+  +L     + TGR S      Q              ++Q  +        
Sbjct: 470 QILGPDGRVHCSLNIN--TETGRLSARRPNLQA-------------SLQRSSFLNINQPA 514

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
           L      +R   IA  GK L+VAD   +E R+LA ++G    ++AF  G D +  T    
Sbjct: 515 LEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNM 574

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +           R   +  E+ L + G  K    +        ++ ++ +  +  +    
Sbjct: 575 Y--------PHVRKAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGKTA 626

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              S    +                             Q  L LW +        V+E  
Sbjct: 627 MGLSKDWKVSLYEA------------------------QQTLDLWYN----DRSEVKEWQ 658

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
           + +  R     R         VH +L  SR L   D+    S L      L R       
Sbjct: 659 TDTIERARITKR---------VHTLLGRSRHL--PDINTSISVLRGH---LERAAINTP- 703

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                VQ  + D+    M    +N      G+ ++L VHDE++ E P         +   
Sbjct: 704 -----VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQEIVVK 758

Query: 650 LMTKN 654
            M+  
Sbjct: 759 CMSFP 763



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 74/254 (29%), Gaps = 49/254 (19%)

Query: 37  WDDEPVKLW-DRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           +     ++W D       +      Y  +  +  + HN  F++ +     GI      + 
Sbjct: 63  FGGGKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGF-YA 120

Query: 95  CTSVLAR-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS------- 142
            T  LAR       GL  SL+         +         ++   F   ++         
Sbjct: 121 DTMHLARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKL 180

Query: 143 ---PPYDC--TRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGER----------- 185
              PP +   T  +    W  +  +   D   T  L+  L   L                
Sbjct: 181 KVIPPVEELQTSKDTRDKWIYYSAH---DSVCTWHLWSSLKKKLQKASWYMEGDKRGNMY 237

Query: 186 ---DLWL-----LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGII 232
              +L+      +   +   G R+D   + +++++   +++       K       D + 
Sbjct: 238 QFYELYWRHFGDVLVQMEAEGMRVDTVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMY 297

Query: 233 RSSRQTYALRMYLF 246
            +      +R  LF
Sbjct: 298 MNVCSDVQIRQILF 311


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 115/365 (31%), Gaps = 78/365 (21%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +  DGR+  +L     + TGR S      Q              ++Q  +        
Sbjct: 470 QILGPDGRVHCSLNIN--TETGRLSARRPNLQA-------------SLQRSSFLNINQPA 514

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
           L      +R   IA  GK L+VAD   +E R+LA ++G    ++AF  G D +  T    
Sbjct: 515 LEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNM 574

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +           R   +  E+ L + G  K    +        ++ ++ +  +  +    
Sbjct: 575 Y--------PHVRKAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGKTA 626

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              S    +                             Q  L LW +        V+E  
Sbjct: 627 MGLSKDWKVSLYEA------------------------QQTLDLWYN----DRSEVKEWQ 658

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
           + +  R     R         VH +L  SR L   D+    S L      L R       
Sbjct: 659 TDTIERARITKR---------VHTLLGRSRHL--PDINTSISVLRGH---LERAAINTP- 703

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                VQ  + D+    M    +N      G+ ++L VHDE++ E P         +   
Sbjct: 704 -----VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQEIVVK 758

Query: 650 LMTKN 654
            M+  
Sbjct: 759 CMSFP 763



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 74/254 (29%), Gaps = 49/254 (19%)

Query: 37  WDDEPVKLW-DRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           +     ++W D       +      Y  +  +  + HN  F++ +     GI      + 
Sbjct: 63  FGGGKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGF-YA 120

Query: 95  CTSVLAR-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS------- 142
            T  LAR       GL  SL+         +         ++   F   ++         
Sbjct: 121 DTMHLARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKL 180

Query: 143 ---PPYDC--TRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGER----------- 185
              PP +   T  +    W  +  +   D   T  L+  L   L                
Sbjct: 181 KVIPPVEELQTSKDTRDKWIYYSAH---DSVCTWHLWSSLKKKLLKASWYMEGDKRGNMY 237

Query: 186 ---DLWL-----LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGII 232
              +L+      +   +   G R+D   + +++++   +++       K       D + 
Sbjct: 238 QFYELYWRHFGDVLVRMEAEGMRVDTVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMY 297

Query: 233 RSSRQTYALRMYLF 246
            +      +R  LF
Sbjct: 298 MNVCSDVQIRQILF 311


>gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
 gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
          Length = 709

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 121/384 (31%), Gaps = 74/384 (19%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRG-----------YRIDLDLVLKLQELIAQ 215
           ++ T ELF++       +  L+   + I  R            +++DL+ +   +  I  
Sbjct: 285 IDKTLELFEKFT----KDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIES 340

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ--- 272
           E K++ + I  L+          + +   LF    +     S  T      H NI     
Sbjct: 341 ELKEISDKIYGLSGCKFNIL-SPFEVSEVLFEKMKLKSNKFSAQTKTIDSRHKNIKHREF 399

Query: 273 ------LAKDL--ILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRW 320
                 +  D+   +  L     ++ KL +      +   S+G L        ++ TGR 
Sbjct: 400 APTNSLVLDDINHPIVELIKKFRSLSKLVSNWLSFDQKSDSEGILHP-WILVLSTATGRI 458

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                             S  +R   +    K ++  D
Sbjct: 459 SSVFPNLQNIP-----------------------SFNDEQSLNIRKFFLPPTKKTMISVD 495

Query: 381 LAGIEARVLAWIAGEDWKIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            + +E R+LA ++ +         +  DI+       FN   + V+++ R   K    A 
Sbjct: 496 YSQLELRILAHLSDDKKLKDLCNVDQGDIHSMIAKMIFNK--NNVTEDMRKEAKTNIYAT 553

Query: 440 GYQG------GAKVFKTMASH--------CGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
            Y        G  V                    + F +       F    + +     M
Sbjct: 554 IYGKKVENMSGISVIDIFQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKVSDKM 613

Query: 486 QDQYPEFAVKDKLIGTACELVKKA 509
           +D+    +V   + GTA + VK A
Sbjct: 614 RDE--RISVNTIIQGTAADFVKFA 635


>gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus]
          Length = 172

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 21/172 (12%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              L      +R     +    ++VAD + IE R+ A    +   I AF  G D++  T 
Sbjct: 1   DPNLQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFTA 60

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTF 472
           +       + ++KE+R + K +   L Y    +     A S  G+++      +     F
Sbjct: 61  SLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQIFHEKFF 120

Query: 473 EDWEQAESHHLWMQDQYPEF--------------------AVKDKLIGTACE 504
           E ++  +  H   +++                        AV   + GT  +
Sbjct: 121 EHYKGFKKWHEETKEKLKNHREIEVVSLLGRRMKVMKFTDAVNYPIQGTGAD 172


>gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti]
 gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti]
          Length = 1987

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 147/451 (32%), Gaps = 68/451 (15%)

Query: 172  ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG- 230
               + L      E  +      +   G+  D + +  L E +   ++++ E +  L  G 
Sbjct: 1568 RTQEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTLNGGR 1627

Query: 231  --IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                 S+ +  A         G         T + +L   +   LA  +I  R   S  +
Sbjct: 1628 RLNFASTSEVAAALKVPRERNGRV------KTCRQVLEKIDSP-LATLVIAYRKIESNLS 1680

Query: 289  ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               +  L  A+    R+ G    Y  + TGR S      Q +                + 
Sbjct: 1681 -RTIEPLYRAIRDGKRIYG--NSYCFTSTGRISMHEPNLQTV----------------VK 1721

Query: 349  RGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
              +   DP  +     RS    +S  + L+ AD   +E  VL  ++ +   +     G+D
Sbjct: 1722 DFKVEIDPGHVEVFSCRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKD 1781

Query: 408  IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------L 459
            ++    AK      +  VS E R   K +   + Y  GA   K+MA+   +D       +
Sbjct: 1782 VFRGIAAKWNRIEDEALVSDELRNYTKAIVYGVIYGMGA---KSMAAELNVDEDMACTLM 1838

Query: 460  QQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDKL 498
            +QF         + D     +                          + +    AV   +
Sbjct: 1839 EQFHSTYPEIRRYADKVIQVTRERGYIETLTGRRRYLPAIHSTDMKKRSEAERQAVCTTV 1898

Query: 499  IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
             G+A +++K A     + + +  + L  G   +V     +    +  VPR   R+  + +
Sbjct: 1899 QGSAADILKNAILRMMRNLRKYRQTLRLGQVELVLH---MHDELIFEVPRDQSRKVAKIL 1955

Query: 559  HIVLPSSRRLVYS---DVKGDCSYLNTATSQ 586
               + +  +L       VK   S+     +Q
Sbjct: 1956 KSSMENCAKLSLPLRVKVKMGASWGEMQETQ 1986


>gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
 gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
          Length = 1974

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 145/479 (30%), Gaps = 100/479 (20%)

Query: 180  LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            L D E  L      +   G   D  ++ +      +  ++++ +   L    +  +   +
Sbjct: 1480 LRDAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPGAEPAF 1539

Query: 240  ALRM------YLFLITGIDLV--------------DMSEGTLKSILSHSNITQL-AKDLI 278
            +L         LF    +                   +   L ++   S++  L  +   
Sbjct: 1540 SLASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPALVLEHRT 1599

Query: 279  LNRLASSGSAILKLNTLSEAVSSDG--------RLRGTLQFYGASRTGRWSGCVFQPQNL 330
            L+R  +    +++L  L  A   +G        RLRG +     + TGR +      Q +
Sbjct: 1600 LSRCVAMADEMVEL-ALGGARRDEGNSSRGKITRLRGAI-HQTNTETGRLAMEEPNLQTV 1657

Query: 331  PRQERSEEILTQTIQ-------------ALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            P+            +                      +     +  VR+  +A  G  L+
Sbjct: 1658 PKPRTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAPPGAVLL 1717

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFAN--------GEDIYVTTYAKAFNTPIDKVSKEQR 429
             AD   +E RV+A ++G++  ++AF +          D +    ++     + KVS   R
Sbjct: 1718 SADYRQLELRVMAHMSGDEGLVRAFNHEGAPPHHPDADPFRFLASRWRGVEVGKVSDADR 1777

Query: 430  AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------- 475
            A+ K +   + Y  G    A+      S   + ++ F  +V     +             
Sbjct: 1778 AVAKQLAYGVLYGSGPARFAQEMGVTESEARVQIEAFKASVPGVERWRKKLIETASRASP 1837

Query: 476  ---------------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                       E A+      +      AV     G+A ++VK+
Sbjct: 1838 PSVETICGRRRILSSLAPDAALTATGCEDAKRRFRLDRSADERRAVNTACQGSAADVVKR 1897

Query: 509  AWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            A  A        +      + +     V     + A R     R +M R   +    +P
Sbjct: 1898 AMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARAV---RAIMERAGDEFGFTVP 1953


>gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
          Length = 2044

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 83/559 (14%), Positives = 161/559 (28%), Gaps = 111/559 (19%)

Query: 21   VWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
            V+ Y       + A + D   +++WD  T +    + +++ +R  +V  +  N  F+   
Sbjct: 1440 VY-YCNFPKDLMMAGSNDS--IEMWDELTRR---WNRVIEIMRQNSVKKMTWNLKFQIQA 1493

Query: 80   FKKTLGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLT-----KMEEGKA 130
             K          R      + +       L   L+   +       L        EE K 
Sbjct: 1494 LKYPCVSCQRLSRLHLDYKMLKNVEVLDNLYVFLQPVSVHSGLDICLVAWVLWPDEESKT 1553

Query: 131  L--IARFCKGSIDSPPYDCTRANHVQAWQLFGEY---CKRDVEATRELFKRLIPLS---- 181
            +  + +  K  + +        +     Q+       C R    TR L   L  L     
Sbjct: 1554 VPNLEKLVKRRLHNEAAAAANRDGRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQN 1613

Query: 182  ------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                    E  L  +   +   G   D+D  L+ + +I ++ K+L+++  KL      S 
Sbjct: 1614 LNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLAGKSF-SL 1672

Query: 236  RQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-N 293
              T  +   L+    + +     +G L       ++  L     +  +      + KL N
Sbjct: 1673 NATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLN 1732

Query: 294  TLSEAVSSDGRLRGTLQ--------FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ S  +L    Q           ++ TGR S      Q                 
Sbjct: 1733 GTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQ----------------- 1775

Query: 346  ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN- 404
                                          LV AD + IE R++A  + +   I+  +  
Sbjct: 1776 --------------------------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKP 1809

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQ 460
              D++    ++        +  ++R   K     + Y  GA                 +Q
Sbjct: 1810 DGDVFTMIASRWTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQ 1869

Query: 461  QFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLI 499
             F +     S++     A   H    +                          AV     
Sbjct: 1870 SFKRFFPGVSSWLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQ 1929

Query: 500  GTACELVKKAWRAKHQGVL 518
            G+A +++K A    H  + 
Sbjct: 1930 GSAADIIKVAMIKVHSAIT 1948


>gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica
            Group]
          Length = 2065

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 83/559 (14%), Positives = 161/559 (28%), Gaps = 111/559 (19%)

Query: 21   VWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
            V+ Y       + A + D   +++WD  T +    + +++ +R  +V  +  N  F+   
Sbjct: 1461 VY-YCNFPKDLMMAGSNDS--IEMWDELTRR---WNRVIEIMRQNSVKKMTWNLKFQIQA 1514

Query: 80   FKKTLGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLT-----KMEEGKA 130
             K          R      + +       L   L+   +       L        EE K 
Sbjct: 1515 LKYPCVSCQRLSRLHLDYKMLKNVEVLDNLYVFLQPVSVHSGLDICLVAWVLWPDEESKT 1574

Query: 131  L--IARFCKGSIDSPPYDCTRANHVQAWQLFGEY---CKRDVEATRELFKRLIPLS---- 181
            +  + +  K  + +        +     Q+       C R    TR L   L  L     
Sbjct: 1575 VPNLEKLVKRRLHNEAAAAANRDGRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQN 1634

Query: 182  ------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                    E  L  +   +   G   D+D  L+ + +I ++ K+L+++  KL      S 
Sbjct: 1635 LNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLAGKSF-SL 1693

Query: 236  RQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-N 293
              T  +   L+    + +     +G L       ++  L     +  +      + KL N
Sbjct: 1694 NATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLN 1753

Query: 294  TLSEAVSSDGRLRGTLQ--------FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ S  +L    Q           ++ TGR S      Q                 
Sbjct: 1754 GTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQ----------------- 1796

Query: 346  ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN- 404
                                          LV AD + IE R++A  + +   I+  +  
Sbjct: 1797 --------------------------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKP 1830

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQ 460
              D++    ++        +  ++R   K     + Y  GA                 +Q
Sbjct: 1831 DGDVFTMIASRWTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQ 1890

Query: 461  QFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLI 499
             F +     S++     A   H    +                          AV     
Sbjct: 1891 SFKRFFPGVSSWLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQ 1950

Query: 500  GTACELVKKAWRAKHQGVL 518
            G+A +++K A    H  + 
Sbjct: 1951 GSAADIIKVAMIKVHSAIT 1969


>gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae]
 gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae]
          Length = 2135

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 113/364 (31%), Gaps = 52/364 (14%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  L L+   +   G+ +    +  L   IA   KKL+  I +L       +      
Sbjct: 1728 DNEMPLCLILAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELNGSRFNINSSQAVA 1787

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            ++          V  S   L+       +     +LI      +   +  +  L +    
Sbjct: 1788 KVLGIHRKPTGRVSTSREVLER------LEAPIANLICQYRKLNALLVKNVQPLMKC-CL 1840

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            + R+ G       + TGR S      QN+ +    +      I +               
Sbjct: 1841 NNRIHGHS--ITNTATGRISMAEPNLQNVAKNFVVDVQDRGAIVSC-------------- 1884

Query: 362  DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               RS  +  +  + L+ AD   +E R+LA ++ +   + A  +  DI+ +  A      
Sbjct: 1885 ---RSAFMPMDSTRCLLSADFCQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMN 1941

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
              +VS + R   K +   + Y    +              +  +QF  N     ++ +  
Sbjct: 1942 ESEVSDQLREGTKKICYGIIYGMSMRKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRL 2001

Query: 477  QAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
               + H                        + +    AV   + G+A ++ K A     +
Sbjct: 2002 IKYARHKGYVETITGRRRYLENIRSEDAGTRKKAERQAVNSTIQGSAADIAKVAIIKSVK 2061

Query: 516  GVLQ 519
             + +
Sbjct: 2062 YMRR 2065



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 524  LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
            +TE  A V+ E    +   + +    +++  +   ++   + RR    +++ + +     
Sbjct: 1975 VTEQEAEVLSEQFHSNYPGIRSYTNRLIKYARHKGYVETITGRRRYLENIRSEDA---GT 2031

Query: 584  TSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------------ATKNGYDIVLTVHD 630
              +  R+         + +Q  + DI    +                 +N  ++VL +HD
Sbjct: 2032 RKKAERQA------VNSTIQGSAADIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLHIHD 2085

Query: 631  EIVSETPDT 639
            E++ E P  
Sbjct: 2086 ELMFEVPAD 2094


>gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi]
 gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi]
          Length = 2235

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 139/435 (31%), Gaps = 61/435 (14%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            + E  + +    +   G+      +  L + +    KKL+  I +L      +   T A+
Sbjct: 1828 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRF-NLGSTQAV 1886

Query: 242  RMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
               L    G+         T + IL   +       LILN    S      +  L +   
Sbjct: 1887 AKVL----GLHRKANGRISTSRQILEKLDSP--MSQLILNYRKLSMLLSKNMQPLLKC-C 1939

Query: 301  SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
               R+ G    Y A  TGR S      QN+ +    +    +   +              
Sbjct: 1940 QANRVHGQSITYTA--TGRISMSEPNLQNVAKDFEIQLGAEKINISC------------- 1984

Query: 361  SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                RS     +GK+ L+ AD   +E R+LA ++ +   +K   + +D++    A     
Sbjct: 1985 ----RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKI 2040

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTF--- 472
            P  +VS++ R   K +   + Y  G +              +  +QF         +   
Sbjct: 2041 PESEVSEQLRNGTKQICYGIVYGMGMRSLAESLKCTEQEAQMISEQFHLAYAGIKAYAMK 2100

Query: 473  ------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                 +   S    +++Q    A+   + G+A ++ K A     
Sbjct: 2101 VVKFARNNGYVETITGRRRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRME 2160

Query: 515  QGVLQLWKDL---TEGFACVVQEGG----SISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
            + + +  + L         V+         +   +   V +++    +  V + +P   +
Sbjct: 2161 KNIGRYREKLGLAENAVNLVLHLHDELIFEVPVDKAKKVAKVLSLTMENCVKLSVPLRVK 2220

Query: 568  LVYSDVKGDCSYLNT 582
            L      GD   +N 
Sbjct: 2221 LKIGRSWGDLQEVNV 2235



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 29/208 (13%)

Query: 458  DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI-GTACELVKKAWRAKHQG 516
             L Q    +K  ++ +D   A + H    ++ PE  V ++L  GT        +    + 
Sbjct: 2012 HLSQDQALLKVMNSPQDLFTAIAAHW---NKIPESEVSEQLRNGTKQICYGIVYGMGMRS 2068

Query: 517  VLQLWKDLTEGFACVVQEGGSISARRVANVPRLV-MRRHKRDVHIVLPSSRRLVYSDVKG 575
            + +  K   +    + ++     A   A   ++V   R+   V  +    R L + +  G
Sbjct: 2069 LAESLKCTEQEAQMISEQFHLAYAGIKAYAMKVVKFARNNGYVETITGRRRYLDHINS-G 2127

Query: 576  DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------------GY 622
            +    N A  Q             + +Q  + DI    +    KN               
Sbjct: 2128 EPQIKNQAERQ----------AINSTIQGSAADIAKSAILRMEKNIGRYREKLGLAENAV 2177

Query: 623  DIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            ++VL +HDE++ E P      V  + SL
Sbjct: 2178 NLVLHLHDELIFEVPVDKAKKVAKVLSL 2205


>gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi]
 gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi]
          Length = 2218

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 139/435 (31%), Gaps = 61/435 (14%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            + E  + +    +   G+      +  L + +    KKL+  I +L      +   T A+
Sbjct: 1811 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRF-NLGSTQAV 1869

Query: 242  RMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
               L    G+         T + IL   +       LILN    S      +  L +   
Sbjct: 1870 AKVL----GLHRKANGRISTSRQILEKLDSP--MSQLILNYRKLSMLLSKNMQPLLKC-C 1922

Query: 301  SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
               R+ G    Y A  TGR S      QN+ +    +    +   +              
Sbjct: 1923 QANRVHGQSITYTA--TGRISMSEPNLQNVAKDFEIQLGAEKINISC------------- 1967

Query: 361  SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                RS     +GK+ L+ AD   +E R+LA ++ +   +K   + +D++    A     
Sbjct: 1968 ----RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKI 2023

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTF--- 472
            P  +VS++ R   K +   + Y  G +              +  +QF         +   
Sbjct: 2024 PESEVSEQLRNGTKQICYGIVYGMGMRSLAESLKCTEQEAQMISEQFHLAYAGIKAYAMK 2083

Query: 473  ------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                 +   S    +++Q    A+   + G+A ++ K A     
Sbjct: 2084 VVKFARNNGYVETITGRRRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRME 2143

Query: 515  QGVLQLWKDL---TEGFACVVQEGG----SISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
            + + +  + L         V+         +   +   V +++    +  V + +P   +
Sbjct: 2144 KNIGRYREKLGLAENAVNLVLHLHDELIFEVPVDKAKKVAKVLSLTMENCVKLSVPLRVK 2203

Query: 568  LVYSDVKGDCSYLNT 582
            L      GD   +N 
Sbjct: 2204 LKIGRSWGDLQEVNV 2218



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 29/208 (13%)

Query: 458  DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI-GTACELVKKAWRAKHQG 516
             L Q    +K  ++ +D   A + H    ++ PE  V ++L  GT        +    + 
Sbjct: 1995 HLSQDQALLKVMNSPQDLFTAIAAHW---NKIPESEVSEQLRNGTKQICYGIVYGMGMRS 2051

Query: 517  VLQLWKDLTEGFACVVQEGGSISARRVANVPRLV-MRRHKRDVHIVLPSSRRLVYSDVKG 575
            + +  K   +    + ++     A   A   ++V   R+   V  +    R L + +  G
Sbjct: 2052 LAESLKCTEQEAQMISEQFHLAYAGIKAYAMKVVKFARNNGYVETITGRRRYLDHINS-G 2110

Query: 576  DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------------GY 622
            +    N A  Q             + +Q  + DI    +    KN               
Sbjct: 2111 EPQIKNQAERQ----------AINSTIQGSAADIAKSAILRMEKNIGRYREKLGLAENAV 2160

Query: 623  DIVLTVHDEIVSETPDTPYFSVGTLCSL 650
            ++VL +HDE++ E P      V  + SL
Sbjct: 2161 NLVLHLHDELIFEVPVDKAKKVAKVLSL 2188


>gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2100

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/520 (14%), Positives = 141/520 (27%), Gaps = 169/520 (32%)

Query: 163  CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            C R V  TR L   L  L             E  L  +   +   G  +D++  ++ + +
Sbjct: 1650 CCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNV 1709

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEGTLKSILSHSNIT 271
            + ++ + L+++  +L             +   L+    + +    ++G          + 
Sbjct: 1710 LGKKLRHLEKEAYELAGMTFSLYT-AADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLD 1768

Query: 272  QLAKDLILNRLASSGSAILKLN--------TLSEAVSSDGR--LRGTLQFYGASRTGRWS 321
             L  +  +  +      + KL         +L+       R  L G      ++ TGR S
Sbjct: 1769 LLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHW-LQTSTATGRLS 1827

Query: 322  GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                  Q                                               L+ AD 
Sbjct: 1828 MEEPNLQ-------------------------------------------ENWLLLTADY 1844

Query: 382  AGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A  + +    +  +    D++    AK    P   V  ++R   K +   + 
Sbjct: 1845 SQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGIL 1904

Query: 441  YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
            Y  GA    T+A      L +  + ++S                                
Sbjct: 1905 YGMGA---NTLAKQLECSLGEAEEKIRS-------------------------------- 1929

Query: 501  TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                     +R+   GV      L E  AC  ++G   + +        +     ++   
Sbjct: 1930 ---------FRSSFPGVAS---WLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKE--- 1974

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-- 618
             L + R+                                +I Q  + DI+   M N    
Sbjct: 1975 KLKARRQA-----------------------------VNSICQGSAADIIKIAMINIHSV 2005

Query: 619  ---------------------KNGYDIVLTVHDEIVSETP 637
                                 K    I+L VHDE+V E  
Sbjct: 2006 IAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVD 2045


>gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 330

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 41/256 (16%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLK-SILSHSNITQLAKDLILNRLASSGSAILK 291
            +   +  L+  L    GI +  + EG LK     +S + ++ +    N+L ++      
Sbjct: 4   DNLNSSKQLKQSLQE-MGIPVTSVQEGKLKLFSSKYSIVDEIVRYKKYNKLVTTYG---- 58

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L   +S DGRLRG     G ++T R S      Q++P+                   
Sbjct: 59  -DKLKNQLSKDGRLRGHWNLIG-TKTSRMSCQKPNFQSIPK------------------- 97

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       ++    A      ++ D + IE R+LA I      I AF  G D++V 
Sbjct: 98  -----------EMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHVE 146

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKSTS 470
           T     N   + +S  +R +GKV+   L Y       K  + +  G ++ ++       +
Sbjct: 147 TAKAILNQ--ESISDSERKLGKVVNFGLIYGLTPFGLKEKINAIPGFNISEYKAEEFIAN 204

Query: 471 TFEDWEQAESHHLWMQ 486
            F+ + +   +    Q
Sbjct: 205 YFKMYPEVAKYQQQQQ 220



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 42/211 (19%)

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              + + QAE  ++++   Y    ++     T C+ +  A+ A          DL    A
Sbjct: 97  KEMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAG--------ADLHVETA 148

Query: 530 CVV--QEGGSISARRVANVPRLVMRR----HKRDVHIVLPSSRRLVYSDVKGDCS---YL 580
             +  QE  S S R++  V    +            I       +     +   +    +
Sbjct: 149 KAILNQESISDSERKLGKVVNFGLIYGLTPFGLKEKINAIPGFNISEYKAEEFIANYFKM 208

Query: 581 NTATSQLMRERTY-------GGKLTEN---------------IVQAISRDILCEGMK--- 615
               ++  +++ Y       GG   +N                VQA   + L E +    
Sbjct: 209 YPEVAKYQQQQQYSDIITTLGGSYWDNTNGLDRLKPRQRYNYAVQASCAEGLKESLALFC 268

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
              ++ + +V  +HDEI+ E P+T   +   
Sbjct: 269 KLKQDKWKLVSAIHDEIIIEVPETEALTAKE 299


>gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 324

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 246 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 305

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 306 AWDLPLSANGFETYRYRK 323


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 96/510 (18%), Positives = 160/510 (31%), Gaps = 76/510 (14%)

Query: 9   ETRSPQ--PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           ETR+P        G+  YA        A  + +E  + W        P  +        V
Sbjct: 36  ETRTPVAVDTETCGLKIYAWGPGFLRLA-QFGNET-EAWALP-IEHGPEYVEAAAWALRV 92

Query: 67  M--CVAHN-SLFERILFKKTLGIDIP--SKRWICTSVLARTN-------GLPSSLKNACL 114
           +     HN S F+ ++  + LG+ +     +   T +LA+         G   S   A  
Sbjct: 93  LPDLTGHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGLKANS 152

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           A          ++G   + +  K  I          +       + EY   DV  T  L 
Sbjct: 153 ARYIDPTAPDTQDGLKAVFKSLKLKITEGFAKIPLDHPT-----YLEYGLLDVILTSRLR 207

Query: 175 KRL--------IP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            RL        +P  L+  E  +  +   +   G  +D +    LQ  +A +  +  E  
Sbjct: 208 PRLEATLAKLGVPKTLAVYEHRVARICAQMVRAGLVLDEEYTTGLQSDLAYDADRYSEVA 267

Query: 225 VKLTDGIIRSSRQTYA----LRMYLFLITGIDLVDMSEGTLKSILSHSNI--------TQ 272
           +      + S+RQ  A    L   L   T    + + +  L ++                
Sbjct: 268 LGYGVESVNSARQVSAALLDLGETLTEKTASGALKVDKAVLMALADLDRDWKPIRSREPN 327

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +  D +L    +        +   E V + GR+   +Q   A RT R S      Q LP 
Sbjct: 328 VLADAVLRSKRAGKWRSAYADNFLENVDAQGRIHPNVQSMQA-RTFRMSVTQPAVQTLP- 385

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                      +   +R  ++A  G+ +V  D   +E RVLA +
Sbjct: 386 --------------------------SSDKMIRRALLADPGEVMVSVDFQAVELRVLAAL 419

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A       A A GED++  T    F    D  + + R + K +     Y GGA       
Sbjct: 420 ADVKRMKAAIAAGEDLHSFTARLVFG---DGFTDKDRKVSKGIAFGKVYGGGAATVSRQT 476

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 +Q+           E    A+   
Sbjct: 477 GAPLGAVQRAMAKYDQV-YPEVGRAAKDWR 505



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 64/154 (41%), Gaps = 13/154 (8%)

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
            F  V   G +  +R+       V R   +   +     R      ++   +++   +  
Sbjct: 460 AFGKVYGGGAATVSRQTGAPLGAVQRAMAKYDQVYPEVGRAAKDWRIEAFNNHMVGISIT 519

Query: 587 -----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDT 639
                L R+R+Y   +T  +VQ+ +RD L + + +  + G    + L +HDE+++  P  
Sbjct: 520 GHRLPLDRDRSYA--ITNYLVQSTARDCLGQALIHMDEAGLVPYLRLPIHDEVLASVPKA 577

Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKR 672
               +   +   MT +    +G+P++A+    KR
Sbjct: 578 EAEEISRAIAKAMTFS---LRGVPIEADAEIGKR 608


>gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299]
 gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299]
          Length = 953

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 117/394 (29%), Gaps = 76/394 (19%)

Query: 166 DVEATRELFKRL-------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           D+ A+  L +RL         +   E  +      +   G   D   V      + ++  
Sbjct: 481 DILASASLAQRLRATAGLDPNVVRTEGKVAAALGQMEHVGLGFDPSAVRAAVGDLRRKLA 540

Query: 219 KLDE-DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM--SEGTLKSILSHSNIT---- 271
            ++E     + DG   +      +   L+    +        +G   + L+  +      
Sbjct: 541 GIEESAAAAMPDGARVNLASPQQVAEALYGTLKLPPPSSNAQQGAKTAQLTTKDDALRSL 600

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEA---VSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           +  +   L  L     A+ K   +  +   ++   RLR        + TGR S      Q
Sbjct: 601 RDKRLHPLPGLVLEYRAVSKTIAMCNSYASMARGKRLRCDWNN-TRTATGRLSSTNPNIQ 659

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            + + E  E  L                        R    A  GK L+ AD + IE R+
Sbjct: 660 AVGKDETGEFSL------------------------RRAFSAPPGKVLLAADYSQIELRM 695

Query: 389 LAWIAGEDWKIKAFA----NGEDIYVTT--YAKAFNTPIDK-VSKEQRAIGKVMELALGY 441
           LA +AG+   +        +G D++       +    P +  V+KE R   K     L Y
Sbjct: 696 LAHLAGDRGLVALLRRQITDGGDVFERIWNAGR--GAPPETPVAKEDRDRAKRTVYGLLY 753

Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------ 485
             G    A+            +  F +       F    +  +                 
Sbjct: 754 GQGKTGLAEKLGCTGDVAQGLINAFFRAFPGVRAFVTRTKERARVEKRVVLPSGRHRPLP 813

Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAW 510
                    +      AV   + G+A +L+K A 
Sbjct: 814 GFASADQRERAGAERKAVNSLIQGSAADLMKIAM 847


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 136/440 (30%), Gaps = 100/440 (22%)

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           I KL      +++    +  Y       ++   +   ++S++    +  L    I+    
Sbjct: 621 IGKLLKNNQLAAKVYNQIGEYYKQKGDEEMGKRASHAIESLIQLKQVETLLTTFIIP--- 677

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                      L E    DGR+  +L     + TGR S       N P  ++        
Sbjct: 678 -----------LRELADKDGRIHCSLNMN--TETGRISARKPNLMNQPSHDKD------- 717

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +RS   A  G KL+VAD   +E R+LA +      I+AF 
Sbjct: 718 -----------------VYKIRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEAFK 760

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D +  T    +    +++ K         EL L +               L   ++S
Sbjct: 761 MGGDFHSRTAMGMYPKLKEEIEKG--------ELLLEWDKSQGEPPAP-----LLKDKYS 807

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
              K          + ++         ++    K    A +    AW    +  ++ W++
Sbjct: 808 SERKKAKMM---NFSIAYGKSAHGFSKDWNCSMKEAQEALD----AW-FADRKEVKEWQE 859

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
            T+  A       ++  R               +      S+R LV   ++      NT 
Sbjct: 860 NTKKIALEHGYTQTMMGR-----------YRNLERLTHSKSARHLVQHGLRASI---NTP 905

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETP 637
                             +Q  + D++   M          + GY ++L +HDE++ E P
Sbjct: 906 ------------------IQGGAADLVIAAMVKVSQDPKLNELGYKLLLQIHDELILEGP 947

Query: 638 DT-PYFSVGTLCSLMTKNPS 656
           +     ++  +  +M     
Sbjct: 948 EEHAQEALARVIEIMENPLD 967



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 37  WDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWI 94
           + + P    D   + + +     +YL D     + HN  F+R +F    + +        
Sbjct: 129 FGNGPRLFIDNFAQNTDLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNHGINVQGFGGD-- 186

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
            T  LAR        K   LA   +      EE K L  + 
Sbjct: 187 -TMHLARLADPSRGPKEYSLA---NVTKHYEEEIKYLKRQL 223


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 107/719 (14%), Positives = 198/719 (27%), Gaps = 169/719 (23%)

Query: 37  WDDEPVKLW-DRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           + +    +W D  +    +  +   +  D ++  V HN  F+  + +      I    + 
Sbjct: 317 FGNGKTCIWVDVLDGGPDVLMEFAPFFEDSSIRKVWHNYSFDSHVIENY---GIKVAGFH 373

Query: 95  -CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP---------- 143
             T  LAR                 +     M      + +  K S+ +           
Sbjct: 374 ADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDG 433

Query: 144 ---------PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ-- 192
                    P +  +    + W  +      D  +T +L++ L   S  ER  W  D   
Sbjct: 434 SEGKITAIEPVEILQREDRELWICYSSL---DSMSTLKLYESLK--SKLERKPWTFDGCP 488

Query: 193 --------------------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------ 226
                                +   G  +D   + +  E +A  ++KL  D  +      
Sbjct: 489 RGSLYDFYEEYWRPFGAILVKMETAGMLVDRAYLSE-IEKVAVAQRKLAADKFRNWASKY 547

Query: 227 ---LTDGIIRSSRQTYAL-----------RMYLFLITGIDLVD----MSEGTLKSILSHS 268
                   + S  Q   L             +L     I + +    +SEG         
Sbjct: 548 CPDAKYMNVNSDTQIRQLFFGGIENICKPGDFLPKSKAIKVPNDETAVSEGKKVPKYRTI 607

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG-CVFQP 327
            +  + +DL  +   +SG   +  + L       G++   L +      G  S       
Sbjct: 608 ELFNIVEDLKTDIFTASGWPSVSGDALRNLA---GKVPSDLVYSTDDECGSHSEISNCDL 664

Query: 328 QNLPRQERSEEILTQTIQALNRGETIA----------------------DPLGLASDCVR 365
           ++      + +      +       IA                        L      +R
Sbjct: 665 EDTSSYGTAYDAFGGGKEGKEACHAIAALCEICSIDSLISNFILPLQNQPALEKDRYKIR 724

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +    + V 
Sbjct: 725 QAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFRAGGDFHSRTAMNMYPHIREAVD 784

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
           +E     KV+                         Q    V         E+ ++  L  
Sbjct: 785 EE-----KVI-----------------LEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNF 822

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQ---GVLQLWKDLTEGFACVVQEGGSISARR 542
              Y          G     + + W+   +     L+LW           Q      A  
Sbjct: 823 SIAY----------GKTPHGLARDWKVSVKEAKDTLKLWYS-DRKEVLAWQMKQKQLAHE 871

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
            + V  L+ R  +        S +       +G             R            V
Sbjct: 872 KSEVYTLLGRSRRFPNMAHATSGQ-------RGHI----------ERAAINAP------V 908

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
           Q  + D+    M    +N      G+ ++L VHDE++ E P        ++    M+K 
Sbjct: 909 QGSAADVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGPSESAELAKSIVVECMSKP 967


>gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 671

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 139/456 (30%), Gaps = 85/456 (18%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  + +    +   G   D     + +    +  ++L+ +  K     I  +     +
Sbjct: 239 DVEAKVAVALGVLQHHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDINLA-SAQQV 297

Query: 242 RMYLFLITGIDLVDMS--EGTLKSILSH--SNITQLAKDLILNRLASSGSAILKLNTL-- 295
              L+    +        +G+  S LS     +  L K     ++  +    LK   +  
Sbjct: 298 ADVLYNKLKLPTPSAHAMKGSKSSHLSTSVEVLQSLVKHHHFAQIVLNHRGALKERAMCD 357

Query: 296 ----SEAVSSDGRLRGTLQ-FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
               S  +++DGR R   Q     + TGR S      Q + R                  
Sbjct: 358 NYDKSAVIAADGRARIHTQWNNTKTATGRLSSSHPNIQQVGRGTM--------------- 402

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-EDIY 409
                         R+C +A  G+  + AD + IE RVLA ++G+D  I        D++
Sbjct: 403 --------------RNCFVAPTGRTFIAADYSQIELRVLAHLSGDDRLISLLRQAKGDVF 448

Query: 410 VTT--YAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL--- 459
           V      K    P+D    K  R I K     + Y     G A+      S     +   
Sbjct: 449 VAIWNAGK--GLPLDAPAEKSTRDIAKRTAYGIVYGQHATGLAEKLGVPKSEAQGYIAAF 506

Query: 460 ---------------QQFSQNVKSTSTFEDWEQAESHH----LWMQDQYPEFAVKDKLIG 500
                          Q+  Q    T       +A           + +    AV   + G
Sbjct: 507 HRAFPKVNQWITRVLQRAEQTGAVTLPMSGRHRALPKIHSKVFSERSEAQRQAVNTIIQG 566

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR------------RVANVPR 548
           TA +++K A       V             V ++  ++ A+             V    R
Sbjct: 567 TAADMMKTAMLRWTSAVGAGRFANDVAPGSVNKKRVTLVAQIHDELLFEVDEDYVPECAR 626

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            V    +  + + +P+  +L      G+    ++A 
Sbjct: 627 AVKNVMENAIKLAVPTPIKLAVGTSWGELREEDSAV 662


>gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 681

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 108/355 (30%), Gaps = 52/355 (14%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107
           + L + L D+ +     +     +  ++ LGI +         +LA          G   
Sbjct: 362 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 418

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            L N+              +GK    +          +  T+ + +   +          
Sbjct: 419 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 470

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  ++L    + E  + ++   +   G ++    ++K++  +      L   I +L
Sbjct: 471 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 528

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283
                 +      L + LF    +     ++     ++  +      + +  D++  R  
Sbjct: 529 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 587

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S   +   +N L + + +DG++         + TGR S      QN+P            
Sbjct: 588 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 633

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                               +R   +       L   D + +E RVLA ++ E  
Sbjct: 634 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKN 676


>gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 92

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 4  LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
          LF D+ET S  P+   G   YAE A I L AYA++   VK+WD TE   MP+DL  Y   
Sbjct: 5  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63

Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPSK 91
            ++ V HN  +F+ ++ K  L ID+P  
Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPLS 92


>gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding /
            DNA-directed DNA polymerase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
          Length = 1034

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 113/369 (30%), Gaps = 94/369 (25%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            S     DGR+  +L     + TGR S      QN P  E+                    
Sbjct: 725  SNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 765

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   IAS G  L+VAD   +E R+LA +A  +   +AF  G D +  T   
Sbjct: 766  -------KIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMN 818

Query: 416  AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             +           R   +  E+ L                     Q    V         
Sbjct: 819  MY--------PHIREAVENGEVLL--------------EWHPQPGQEKPPVPLLKDAFAS 856

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW---RAKHQGVLQLWKDLTEGFACVV 532
            E+ ++  L     Y + A+           + + W   R + Q  + LW +  +      
Sbjct: 857  ERRKAKMLNFSIAYGKTAI----------GLSRDWKVSREEAQDTVNLWYNDRQEV---- 902

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                     R     R      K  V  +L  +R+      +   +++        R   
Sbjct: 903  ---------RKWQELRKKEAIQKGYVLTLLGRARKFPEYRSRAQKNHI-------ERAAI 946

Query: 593  YGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                     VQ  + D+    M      +   + G+ ++L VHDE++ E P     +   
Sbjct: 947  NTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKD 1000

Query: 647  L-CSLMTKN 654
            +  + M++ 
Sbjct: 1001 IVVNCMSEP 1009



 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 70/247 (28%), Gaps = 55/247 (22%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS 107
               + ++   +  D ++  V HN  F+  + +      I    +   T  +AR      
Sbjct: 319 NGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSR 375

Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-------------------PPYD 146
             S   +  AL     +    E K     F K S+                     PP  
Sbjct: 376 RISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVK 435

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW 188
             +    +AW     Y   D  +T +L++ +                    + D  ++ W
Sbjct: 436 ELQMEDREAW---ISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYW 492

Query: 189 ----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRSSRQTY 239
                L   +   G  +D D + +++ +   E++               D    +     
Sbjct: 493 QPFGELLAKMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDT 552

Query: 240 ALRMYLF 246
            LR   F
Sbjct: 553 QLRQLFF 559


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 113/369 (30%), Gaps = 94/369 (25%)

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           S     DGR+  +L     + TGR S      QN P  E+                    
Sbjct: 690 SNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 730

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IAS G  L+VAD   +E R+LA +A  +   +AF  G D +  T   
Sbjct: 731 -------KIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMN 783

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            +           R   +  E+ L                     Q    V         
Sbjct: 784 MY--------PHIREAVENGEVLL--------------EWHPQPGQEKPPVPLLKDAFAS 821

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW---RAKHQGVLQLWKDLTEGFACVV 532
           E+ ++  L     Y + A+           + + W   R + Q  + LW +  +      
Sbjct: 822 ERRKAKMLNFSIAYGKTAI----------GLSRDWKVSREEAQDTVNLWYNDRQEV---- 867

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                    R     R      K  V  +L  +R+      +   +++        R   
Sbjct: 868 ---------RKWQELRKKEAIQKGYVLTLLGRARKFPEYRSRAQKNHI-------ERAAI 911

Query: 593 YGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                    VQ  + D+    M      +   + G+ ++L VHDE++ E P     +   
Sbjct: 912 NTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKD 965

Query: 647 L-CSLMTKN 654
           +  + M++ 
Sbjct: 966 IVVNCMSEP 974



 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 70/247 (28%), Gaps = 55/247 (22%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS 107
               + ++   +  D ++  V HN  F+  + +      I    +   T  +AR      
Sbjct: 284 NGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSR 340

Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-------------------PPYD 146
             S   +  AL     +    E K     F K S+                     PP  
Sbjct: 341 RISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVK 400

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW 188
             +    +AW     Y   D  +T +L++ +                    + D  ++ W
Sbjct: 401 ELQMEDREAW---ISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYW 457

Query: 189 ----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRSSRQTY 239
                L   +   G  +D D + +++ +   E++               D    +     
Sbjct: 458 QPFGELLAKMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDT 517

Query: 240 ALRMYLF 246
            LR   F
Sbjct: 518 QLRQLFF 524


>gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa]
          Length = 1413

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 110/334 (32%), Gaps = 52/334 (15%)

Query: 216  ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHS 268
              K+L+++   +             LR  LF    + L+     TL  +        S +
Sbjct: 959  RLKELEQEAHFVAGEQF-LITSNSQLREMLFGKLKLHLL-HPRATLPRMGLQRPPSTSDT 1016

Query: 269  NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
             ++ L     L R+      + K+     + L   +   G +       G + TGR S  
Sbjct: 1017 VLSALQDLHPLPRIILEYRQVHKIKSTFVDGLRAHM-KKGSVSSVWNQTG-TVTGRLSAK 1074

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                Q + +         Q     N      D L +++   RS  ++  G+  + AD + 
Sbjct: 1075 RPNMQGISKLPI------QIGAPRNAKGEAGDALTVSA---RSLFVSPEGRSFLAADFSQ 1125

Query: 384  IEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            IE R+LA ++G+   +K F   E  D++    ++      + V++  R   K +  A+ Y
Sbjct: 1126 IELRILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVY 1185

Query: 442  QGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WE 476
              G    A              + F Q  K    F                         
Sbjct: 1186 GAGRERLAACLGVTLREAARFGESFLQKYKKIKDFTQATIARCHQTGYVESVMGRRRPLP 1245

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +  +    ++ Q    AV   + G+A +L K A 
Sbjct: 1246 RIRARDQKLRAQAERQAVNFVVQGSAADLCKMAM 1279


>gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
 gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
          Length = 1996

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 124/413 (30%), Gaps = 82/413 (19%)

Query: 180  LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSR- 236
            L   E  L  +  ++   G       + +      +  ++++ + V +  T    R    
Sbjct: 1503 LRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKRVREIETEAVAVVATHFACRHPGM 1562

Query: 237  --------QTYALRMYLFLI----TGIDLVDMSEGTLKS---ILSHSNITQLAKD----- 276
                     +  +   LF       G +    ++ T           ++  L ++     
Sbjct: 1563 APPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTAARGRRSTRQDDLLALVREQGGPI 1622

Query: 277  LILNRLASSGSAILKLNTLSEAVSSDGRL---------------------RGTLQFYGAS 315
                +L     ++ K   L +  +  GRL                     RG +     +
Sbjct: 1623 AAFPKLVLEHRSLRK---LLDEANEFGRLAKSELGGDAAAAADESVTIRLRGVI-HQTNT 1678

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILT--QTIQALNRGETIADPLGLASDCVRSCIIASNG 373
             TGR +      Q +PR           + + A  R     D     +  +R+   A  G
Sbjct: 1679 GTGRLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGTDAGAEETLAIRNAFRAPRG 1738

Query: 374  KKLVVADLAGIEARVLAWIAGEDWKIKA-FANGEDIYVTTYAKAF--NTPIDKVSKEQRA 430
            KKL+  D   IE RV+A ++ +   I A      D +    A+     T    VS E RA
Sbjct: 1739 KKLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIAARWKGDGTTPKNVSDEDRA 1798

Query: 431  IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-FEDWEQ------------ 477
              K +   + Y  G   ++       L+ +   ++ K +    E W+             
Sbjct: 1799 KAKELCYGICYGAGVGRYQQAMGVTELEARAAIEDFKRSLPGVERWKSALVKDARERTPP 1858

Query: 478  ----------------AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                            A      ++      A+     G+A ++VK+     H
Sbjct: 1859 HVRTIAGRCRFLPSLNATGAGGEIRAADERKAINTACQGSAADIVKRVMIELH 1911


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 151/474 (31%), Gaps = 79/474 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLC-------AYAWDDEPVKLWDRTEQSAMPSD 56
           L +D+ETR+   LP  G   +   A + L        A+  D  P+   D  +++A+   
Sbjct: 40  LGLDVETRA---LPDTGPRHFGPDAGLRLVQLGTATVAWVLD--PL---DPAQRAAI--- 88

Query: 57  LLQYLRDETVMCVAHNSLFERI-LFKK-TLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               L D     V H + F+ + ++    +G+          S L   +           
Sbjct: 89  -AAVLGDPGRRFVTH-TSFDTLAVWSALAIGLGQRVADTHLISKLVDPDERAGHGLKTLT 146

Query: 115 ALNFSEHLTK-MEEGKALIARFCKGSIDSPPY--DCTRANHVQAWQLFGEYCKRDVEATR 171
           A +  + LT       A +         +         A+     + +  Y +R +    
Sbjct: 147 ARHLDDGLTLAQTALYARMRALAPPGERAGERWKTWGWAHLPADDEAYVVYVRRLLPVLL 206

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L      L   E+ L      I  RG  +DL         +  +       I       
Sbjct: 207 DLCGPFSHLVPVEQWLAAQSVGITIRGLALDLPYTRAYLAQVEADHHAAAALIEAELGCP 266

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL--------- 282
             S R    L         +     + G L+  ++   +T LA+DL   RL         
Sbjct: 267 PTSPRFADWL-----DTQHVPGPRTATGRLQ--VTADTLTALARDLDTGRLTVSDQVRRM 319

Query: 283 -------ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                  A++ + I  L +   A    GR+   +     ++TGR S      Q L +   
Sbjct: 320 LTARGRVAATSNTIANLRSFLAAADPAGRVHPQIN-TLRAKTGRMSITGPALQTLKK--- 375

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R C  A  G  L+  D + +E RV A ++ +
Sbjct: 376 ------------------------GDPRLRHCFQADPGHVLISCDFSQVEVRVTAALSRD 411

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
                  A+G DI+  T    F    D  +K+QR + K       Y GGA+   
Sbjct: 412 PALTDVLASGVDIHDATARLLFG---DGFTKDQRTLAKRATFGTIYGGGARALM 462


>gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum]
          Length = 1583

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 120/363 (33%), Gaps = 67/363 (18%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  + ++   +   G+ ++   +++L + + +    + E   + +           + 
Sbjct: 1202 DIEMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQSGIRFN----MQST 1257

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              +  +   + L D S             + L  +L+ N    S      +N +   + +
Sbjct: 1258 LEWAKVKKKLKLTDSS-------------SHLLVELVKNWRKLSCLRNTHIN-MYLTIQN 1303

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+      Y  S TGR S      QN+P+    E  +                     
Sbjct: 1304 D-RVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEILS------------------- 1341

Query: 362  DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              +RS  +  + + LV  D   IE RVLA ++ +   + A  +  D+++   +K  N P 
Sbjct: 1342 --LRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPE 1399

Query: 422  DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF----- 472
             +V  E R   K +   + Y  G    ++            + +F +     + +     
Sbjct: 1400 IEVCDELRQKTKQVCYGMLYGMGTVTLSETLNITQDEAHKLISEFKRTFPGVNKYFNECV 1459

Query: 473  ----------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                              +    S    ++ Q    A+   + G+A ++ K A     + 
Sbjct: 1460 LQCRSMGLVKTLSGRIRHFPDINSEVPKIKSQVERQAINTIIQGSAADVTKMAMIKVDKI 1519

Query: 517  VLQ 519
            + Q
Sbjct: 1520 INQ 1522



 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 598  TENIVQAISRDILCEGMKNATKNGYD--------IVLTVHDEIVSETPDTPYFSVGTLCS 649
               I+Q  + D+    M    K            +V+ +HDE++ +  +T    +   CS
Sbjct: 1497 INTIIQGSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTV---LDEACS 1553


>gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum]
          Length = 1691

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 120/363 (33%), Gaps = 67/363 (18%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  + ++   +   G+ ++   +++L + + +    + E   + +           + 
Sbjct: 1310 DIEMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQSGIRFN----MQST 1365

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              +  +   + L D S             + L  +L+ N    S      +N +   + +
Sbjct: 1366 LEWAKVKKKLKLTDSS-------------SHLLVELVKNWRKLSCLRNTHIN-MYLTIQN 1411

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+      Y  S TGR S      QN+P+    E  +                     
Sbjct: 1412 D-RVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEILS------------------- 1449

Query: 362  DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              +RS  +  + + LV  D   IE RVLA ++ +   + A  +  D+++   +K  N P 
Sbjct: 1450 --LRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPE 1507

Query: 422  DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF----- 472
             +V  E R   K +   + Y  G    ++            + +F +     + +     
Sbjct: 1508 IEVCDELRQKTKQVCYGMLYGMGTVTLSETLNITQDEAHKLISEFKRTFPGVNKYFNECV 1567

Query: 473  ----------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                              +    S    ++ Q    A+   + G+A ++ K A     + 
Sbjct: 1568 LQCRSMGLVKTLSGRIRHFPDINSEVPKIKSQVERQAINTIIQGSAADVTKMAMIKVDKI 1627

Query: 517  VLQ 519
            + Q
Sbjct: 1628 INQ 1630



 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 598  TENIVQAISRDILCEGMKNATKNGYD--------IVLTVHDEIVSETPDTPYFSVGTLCS 649
               I+Q  + D+    M    K            +V+ +HDE++ +  +T    +   CS
Sbjct: 1605 INTIIQGSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTV---LDEACS 1661


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/475 (16%), Positives = 148/475 (31%), Gaps = 100/475 (21%)

Query: 196 DRGYRID--LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +R + +D   +L+    +  +   +KL    V LT     +S         L  + G   
Sbjct: 414 EREFDVDLPPELLPDGDDGASDRTRKLLVRSVGLTPTKYTTSGAPSCTADVLRELAGRPT 473

Query: 254 VD----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            D     +               +A D + N  +        +N L      + R+  +L
Sbjct: 474 DDPPVYGAAHAGFGGGPAGEEACVALDALCNMGSIDTMLNTFINPLRLLADDESRVHCSL 533

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN P  E+ +                          +R    
Sbjct: 534 NLN--TETGRLSSRRPNLQNQPALEKDQYF------------------------IRKAFR 567

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G  LVVAD   +E R+LA +A  +  + AF  G   +  T    F+   + V     
Sbjct: 568 AKEGCALVVADYGQLELRLLAHVARCESMLVAFREGGCFHSRTAVGMFDHVREAVES--- 624

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
                                +    G   +   + +       +  +A++ +  +    
Sbjct: 625 -------------------GAVLLEKGSSPEDSDKPLVKDVYASERRRAKTLNFSIA--- 662

Query: 490 PEFAVKDKLIGTACELVKKAWRAKH---QGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                     G     + K W  K    Q +L+ W D         Q+     A+R    
Sbjct: 663 ---------YGKTAHGLAKDWGVKQEEAQDMLRAWYD-DRPEVEAWQKRTIADAKRTGYT 712

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
               +   +R++  +L  +R L     +G  + +NT                   +Q  +
Sbjct: 713 --TTLMGRRRNLPDILEKNRAL---QGRGARAAINTP------------------IQGSA 749

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKN 654
            D++   M    ++      GY ++L +HDE++ E P+     ++  +  LM   
Sbjct: 750 ADVVMMAMLKIAESKTLKDLGYTLLLQIHDEVILEGPEQHKEAALAEVTKLMEAP 804


>gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1]
 gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1]
          Length = 895

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 138/445 (31%), Gaps = 78/445 (17%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
             +   G+  + E+  ITL  Y  DDE  + +  TE+  +  D+ +    +      HN 
Sbjct: 21  ADIETTGLDYFTEK--ITLVQYGTDDEHQQWY--TEEPTI-EDIKEL---KKRTLFWHNG 72

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS-------EHLTKME 126
            F+        G+ +P      + VL    G   SL     A           EH  K+ 
Sbjct: 73  KFDTKFIAYHFGVMLPIHG--DSMVLLHALGYSDSLSLKVAAAKLLGVENWDIEHDLKLS 130

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC-----KRDVEATRELFKRLIPLS 181
           +G    A   K           +  +     L            D +    +      + 
Sbjct: 131 KGPDEEA--SKLKFFEYGLKDVKYTYALMRLLLTGVNSQSDDPEDSKNFNTIDDLQYNVY 188

Query: 182 DGERDLWLLDQTINDRGYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           + E   +   + I   G  + D+       +          EDI             +  
Sbjct: 189 NNELKAYSAFRYIEMTGTPLGDMSKSQDAID-------GKIEDIENKWGFRFDWVNSSDK 241

Query: 241 LRMYLFLITG-IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS--- 296
           +   L L+   +   D  + ++   +   +I ++         A     + KL  L    
Sbjct: 242 VGALLSLVDKRLKPGDNGKISVTKEVLTKHIQEVGDF------AYDVKEVRKLKKLIQFF 295

Query: 297 ---EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
                +  DGR+         ++TGR S      Q +P+  R                  
Sbjct: 296 DSWNKLGHDGRIFPQFNIT--TKTGRTSSSNPNLQQVPQDSR------------------ 335

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     VR+ I A  G K +  D + +E R  A+ A E   ++A+ NG D++  T+
Sbjct: 336 ----------VRNIIAAPKGMKFIECDYSQLELRCAAYCAQEPAMMEAYKNGADLHTKTW 385

Query: 414 AKAFNTPID---KVSKEQRAIGKVM 435
                 P      ++K +R I K  
Sbjct: 386 ESMNGRPFSDDHDMAKRERTIAKAC 410


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 104/362 (28%), Gaps = 86/362 (23%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 726  CKEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 762

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   +A+ G  L+VAD   +E R+LA +      ++AF  G D +  T    +  
Sbjct: 763  ---KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              D V +                      K +         Q    V         E+ +
Sbjct: 820  VRDAVEE----------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRK 857

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +  L     Y + AV             K    + +  L+LW           Q+     
Sbjct: 858  AKMLNFSIAYGKTAVGLSWDW-------KVEVREARDTLKLWYR-DRKEVSAWQKKQKAF 909

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
            A     V  L+ R  +          +       KG             R          
Sbjct: 910  ALEKCEVYTLLGRSRQFPNMTHAGPGQ-------KGHV----------ERAAINAP---- 948

Query: 600  NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
              VQ  + D+    M    +N      G+ ++L VHDE++ E P        T+    M+
Sbjct: 949  --VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMS 1006

Query: 653  KN 654
            K 
Sbjct: 1007 KP 1008



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 76/261 (29%), Gaps = 49/261 (18%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLA 100
           V + D      M  +   +  D ++  V HN  F+  + +      I    +   T  LA
Sbjct: 330 VDVLDGGRDVLM--EFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLA 384

Query: 101 RTNGLPS------SLKNACLALNFSEHLTKM--EEGKALIAR-FC--KGSIDSPPYDCTR 149
           R            SL+         + + K   + GK  +   F   K   D        
Sbjct: 385 RLWDSSRRTDGGYSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSEGKTIS 444

Query: 150 ANHVQAWQLFGE-----YCKRDVEATRELFKRLI-PLSDGER---------------DLW 188
              V+  Q         Y   D  +T +L++ L   L   E                + W
Sbjct: 445 IEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYW 504

Query: 189 L----LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRSSRQTY 239
                L   +   G  +D   + ++++    ER+   +   K       D    +     
Sbjct: 505 RPFGALLVKMETEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDN 564

Query: 240 ALRMYLFLITGIDLVDMSEGT 260
            +R   F   GI+  +    T
Sbjct: 565 QIRQLFFG--GIENRNKRGET 583


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 106/315 (33%), Gaps = 78/315 (24%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGR+  +L     + TGR S      QN P  E+                         
Sbjct: 489 SDGRVHCSLNIN--TETGRLSARRPSLQNQPALEKDRY---------------------- 524

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   +A+ GK LVVAD   +E R+LA +A       AF  G D +  T    +   
Sbjct: 525 --KIRQAFVAAPGKSLVVADYGQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMNMYPHV 582

Query: 421 IDKVSKEQ-----------------------RAIGKVMELALGYQ----GGAKVFKTMAS 453
            + V KE+                       R   K++  ++ Y     G AK +K    
Sbjct: 583 REAVEKERVLLEWESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKVKVD 642

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492
                +  +  +      ++   + E+H                     +  ++      
Sbjct: 643 EAKATVDLWYSDRPEVLAWQKERKQEAHTSLRVHTLLGRARHLPDINSSNALLRSHMERA 702

Query: 493 AVKDKLIGTACELVKKAW--RAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVAN-VPR 548
           A+   + G+A ++   A     ++  + +L WK L +    V+ EG S SA+     V +
Sbjct: 703 AINTPVQGSAADVAMCAMLEINRNSKLRELGWKLLLQVHDEVILEGPSESAQEAKELVIK 762

Query: 549 LVMRRHKRDVHIVLP 563
            +M     +  + + 
Sbjct: 763 SMMYPFNGENFLDVE 777



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 37  WDDEPVKLW-DRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-W 93
           + +   +LW D  +    +     +Y  D ++  V HN  F++ +  +     I  +  +
Sbjct: 60  FGNGKNRLWVDVLDGGDGILEVFRRYFEDPSIKKVWHNYSFDKHILSRH---GIHPQGFY 116

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             T  LAR +           +L       K+ +G          + +    D T     
Sbjct: 117 ADTMHLARLHDSARRGAKGGYSLEVLSADEKVMDG-----YLGHLTEED---DITLVGKK 168

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              +LFG+   +   +  ++ K + P+ + +RD  L D  I
Sbjct: 169 SMKELFGKANLKKDGSPGKI-KTIPPVDELQRDGELRDAWI 208


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 103/308 (33%), Gaps = 80/308 (25%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 811  GKNGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 847

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-- 417
                +R   IA+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 848  ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPH 904

Query: 418  --------------------NTPIDKVSKE----QRAIGKVMELALGYQ----GGAKVFK 449
                                + P   + K+    +R   K++  ++ Y     G A+ +K
Sbjct: 905  IREAVEKREVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWK 964

Query: 450  TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD---------------------Q 488
                     ++++ +  K    +++  + E+  L                          
Sbjct: 965  VSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGH 1024

Query: 489  YPEFAVKDKLIGTACELVKKAW--RAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVAN 545
                A+   + G+A ++   A    +++  + +L WK L +    V+ EG + SA     
Sbjct: 1025 IERAAINTPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKA 1084

Query: 546  VPRLVMRR 553
            +    M +
Sbjct: 1085 IVVECMEK 1092



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 77/280 (27%), Gaps = 68/280 (24%)

Query: 26  EQAVITLCAYAWDDEP------------VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
           +   I    ++    P            V + D      +  +   +  D ++  V HN 
Sbjct: 377 DHGEI--ICFSIYSGPEADFGNGKSCIWVDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNY 433

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK------MEE 127
            F+  + +     D+    +   ++        S       +L      +K      M  
Sbjct: 434 SFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSN 490

Query: 128 GKALIAR------FCKGSIDS----------PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           G+ LI +      F K  +             P +  +    + W     Y   D  +T 
Sbjct: 491 GEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPW---ISYSALDSMSTL 547

Query: 172 ELFKRLI-PLSDGER---------------DLW----LLDQTINDRGYRIDLDLVLKLQE 211
           +L++ +   L D E                  W     L   +   G  +D   + K+++
Sbjct: 548 KLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEK 607

Query: 212 LIAQERKKLDEDIVKLT-----DGIIRSSRQTYALRMYLF 246
           +   E +               D    +      LR  LF
Sbjct: 608 VAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 647


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 103/308 (33%), Gaps = 80/308 (25%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 727  GKNGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 763

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-- 417
                +R   IA+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 764  ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPH 820

Query: 418  --------------------NTPIDKVSKE----QRAIGKVMELALGYQ----GGAKVFK 449
                                + P   + K+    +R   K++  ++ Y     G A+ +K
Sbjct: 821  IREAVEKREVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWK 880

Query: 450  TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD---------------------Q 488
                     ++++ +  K    +++  + E+  L                          
Sbjct: 881  VSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGH 940

Query: 489  YPEFAVKDKLIGTACELVKKAW--RAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVAN 545
                A+   + G+A ++   A    +++  + +L WK L +    V+ EG + SA     
Sbjct: 941  IERAAINTPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKA 1000

Query: 546  VPRLVMRR 553
            +    M +
Sbjct: 1001 IVVECMEK 1008



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 77/280 (27%), Gaps = 68/280 (24%)

Query: 26  EQAVITLCAYAWDDEP------------VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
           +   I    ++    P            V + D      +  +   +  D ++  V HN 
Sbjct: 293 DHGEI--ICFSIYSGPEADFGNGKSCIWVDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNY 349

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK------MEE 127
            F+  + +     D+    +   ++        S       +L      +K      M  
Sbjct: 350 SFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSN 406

Query: 128 GKALIAR------FCKGSIDS----------PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           G+ LI +      F K  +             P +  +    + W     Y   D  +T 
Sbjct: 407 GEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPW---ISYSALDSMSTL 463

Query: 172 ELFKRLI-PLSDGER---------------DLW----LLDQTINDRGYRIDLDLVLKLQE 211
           +L++ +   L D E                  W     L   +   G  +D   + K+++
Sbjct: 464 KLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEK 523

Query: 212 LIAQERKKLDEDIVKLT-----DGIIRSSRQTYALRMYLF 246
           +   E +               D    +      LR  LF
Sbjct: 524 VAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 563


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 1/132 (0%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R    A  G  ++ AD + IE R++A    ++  +KAF   +D++  T +       ++
Sbjct: 4   LRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNYEE 63

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           ++KE+R + K +   L Y    K     A S+ G+++     N    + FE ++  +  H
Sbjct: 64  ITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIKKWH 123

Query: 483 LWMQDQYPEFAV 494
              ++       
Sbjct: 124 EETKNHLNHHGY 135


>gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
 gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
          Length = 115

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M  L IDIET S  PL K G + Y E     I L AY+ D++PV++ D      +P ++ 
Sbjct: 1  MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60

Query: 59 QYLRDETVMCVAH 71
            L DE V+  A 
Sbjct: 61 LALEDEFVIKWAW 73


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 94/301 (31%), Gaps = 77/301 (25%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            S     DGR+  +L     + TGR S      QN P  E+                    
Sbjct: 740  SNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 780

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T   
Sbjct: 781  -------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMN 833

Query: 416  AFNTPIDKVSKEQ--------------------------RAIGKVMELALGYQ----GGA 445
             +    + V   Q                          R   K++  ++ Y     G +
Sbjct: 834  MYPHVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLS 893

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-------------------HHLWMQ 486
            + +K         +  +  + +    +++  + E+                        +
Sbjct: 894  RDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLTLLGRSRRFPASKSRAQR 953

Query: 487  DQYPEFAVKDKLIGTACELVKKAW--RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +     A+   + G+A ++   A    + +Q + +L   L       V   G I +  +A
Sbjct: 954  NHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIA 1013

Query: 545  N 545
             
Sbjct: 1014 K 1014


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
            polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 94/301 (31%), Gaps = 77/301 (25%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            S     DGR+  +L     + TGR S      QN P  E+                    
Sbjct: 741  SNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 781

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T   
Sbjct: 782  -------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMN 834

Query: 416  AFNTPIDKVSKEQ--------------------------RAIGKVMELALGYQ----GGA 445
             +    + V   Q                          R   K++  ++ Y     G +
Sbjct: 835  MYPHVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLS 894

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-------------------HHLWMQ 486
            + +K         +  +  + +    +++  + E+                        +
Sbjct: 895  RDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLTLLGRSRRFPASKSRAQR 954

Query: 487  DQYPEFAVKDKLIGTACELVKKAW--RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +     A+   + G+A ++   A    + +Q + +L   L       V   G I +  +A
Sbjct: 955  NHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIA 1014

Query: 545  N 545
             
Sbjct: 1015 K 1015


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 77/272 (28%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             +    +GR+  +L     + TGR S      QN P  E+                    
Sbjct: 841  QDVSGENGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 881

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   +A+ G  L+VAD   +E R+LA +A     + AF  G D +  T   
Sbjct: 882  -------KIRQAFVAAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 934

Query: 416  AFNTPIDKVSKEQ--------------------------RAIGKVMELALGYQ----GGA 445
             +    + V   +                          R   K++  ++ Y     G A
Sbjct: 935  MYTHIREAVENGRVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLA 994

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD------------------ 487
            + +K         + ++ ++ K  S +++  + E+                         
Sbjct: 995  RDWKVSVKEAKETVDRWYRDRKEVSDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGS 1054

Query: 488  ---QYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                    A+   + G+A ++   A     + 
Sbjct: 1055 VKGHIERAAINTPVQGSAADVAMCAMLEISKN 1086


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/421 (14%), Positives = 118/421 (28%), Gaps = 104/421 (24%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKL 209
            Y   DV+    ++  L    +    +  L              I   G  +D +    +
Sbjct: 448 PYASGDVDCCLRIYNVLYKRIEEHPKMLELWLGFYPRLTATLAHIEASGVLLDSEYAELV 507

Query: 210 QELIAQERKKLDEDIVKL------------------------------------------ 227
           + +  +E  +L  +I KL                                          
Sbjct: 508 ENIYTEEEHRLLNEIRKLPEVKEVEDEHMMFYKEGLKEMTKPVKDRDASVARLRDKYKIT 567

Query: 228 --TDGIIRSSRQTYALRMYLFLITGIDLV----DMSEGTLKSILSHSNIT---------- 271
              + +      +      LF + G+ L      + + T  + +    +T          
Sbjct: 568 DSENKVHFKPSSSEHKGRLLFKVMGLTLPYDKESIKKETFDNGVPEHQLTWRDYKTDKHA 627

Query: 272 --------QLAKDLILNRLASSGSAILK---LNTLSEAV-SSDGRLRGTLQFYGASRTGR 319
                     AK +    L  S    LK      L +   + DG + G+    G   T R
Sbjct: 628 LAYIAENYPEAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST-R 686

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      Q L                +           +     R+      G  ++  
Sbjct: 687 LSANNPNMQQLSS-------------KVGDPRRFDYKYPIK-RLFRTRF---EGGGMLQL 729

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + +E R+L  IA +    +AF NGED++  T +  +  P D V K+ R   K +   +
Sbjct: 730 DYSALEMRILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGI 789

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y        ++A   G+ +++  +  +    F      +            +   + L 
Sbjct: 790 AYGES---PFSIAPKLGVTVEEAERIFEE--YFASKPSIKQFIEETHQFAQRYGYVETLQ 844

Query: 500 G 500
           G
Sbjct: 845 G 845


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 98/301 (32%), Gaps = 77/301 (25%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            S     DGR+  +L     + TGR S      QN P  E+                    
Sbjct: 738  SNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 778

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T   
Sbjct: 779  -------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMN 831

Query: 416  AF----------------------NTPIDKVSKE----QRAIGKVMELALGYQ----GGA 445
             +                      + P   + K+    +R   K++  ++ Y     G +
Sbjct: 832  MYPHIREAVENGQVILEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAIGLS 891

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-------------------HHLWMQ 486
            + +K         ++ +  + +    +++  + E+                        +
Sbjct: 892  RDWKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRTLLGRSRRFPRYKSRAQK 951

Query: 487  DQYPEFAVKDKLIGTACELVKKAW--RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +     A+   + G+A ++   A    + +Q + +L   L       V   G I +  +A
Sbjct: 952  NHIQRAAINTPVQGSAADVAMCAMLEISTNQQLKKLGWRLLLQIHDEVILEGPIESAEIA 1011

Query: 545  N 545
             
Sbjct: 1012 K 1012


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 106/362 (29%), Gaps = 86/362 (23%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             ++GR+  +L     + TGR S      QN P  E+                        
Sbjct: 871  CAEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 907

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   +A+ G  L+VAD   +E R+LA +      + AF  G D +  T    +  
Sbjct: 908  ---KIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQH 964

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              D V +                      K +         Q    V         E+ +
Sbjct: 965  IRDAVHE----------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRK 1002

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +  L     Y + A+   L       VK+A     +  L+LW           Q+     
Sbjct: 1003 AKMLNFSIAYGKTAL--GLSRDWKVSVKEA-----RDTLKLWYG-DRKEVLAWQKSQKKL 1054

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
            AR    V  L+ R             +       +G             R          
Sbjct: 1055 AREKCEVYTLLGRSRHFPNLTQFGPGQ-------RGHI----------ERAAINAP---- 1093

Query: 600  NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
              VQ  + D+    M    +N      G+ ++L VHDE++ E P         +    M+
Sbjct: 1094 --VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMS 1151

Query: 653  KN 654
            K 
Sbjct: 1152 KP 1153


>gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4]
 gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4]
 gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4]
          Length = 630

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 92/551 (16%), Positives = 171/551 (31%), Gaps = 113/551 (20%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           M+  + +D+ET     +P   + A        L   + +      W     +     L +
Sbjct: 1   MTTYIALDLETEQVARMPHGKIHA--------LFLASNNGAEFYPWGLAAAAV----LEK 48

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D  V+ V  N+ ++  + +   G+DIP  R++ T VLA     P     +  +   S
Sbjct: 49  LLTDPDVIFVIQNAAYDVWVLRHH-GVDIPPGRYVDTMVLAHCVN-PQQGDYSLESYGRS 106

Query: 120 EHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               K++    ++    +  G  D   YD      ++ + L      +DV  T + +  L
Sbjct: 107 VDDEKVDYRTEMVRAGLWEGGKEDPSVYDVPFNPIMERYGL------QDVRLTLKWWGEL 160

Query: 178 IPLSDGERDLWLLDQTINDR------------GYRIDLDLVLKLQELIAQERKKLDEDIV 225
           +P    ERD  L D   N              G  ID    LK    +  + ++   +  
Sbjct: 161 LP--HLERDARLADSYYNIHLPAVETTISLHGGLYIDRKATLKAATELMGDIEEGYLEFA 218

Query: 226 K---------------------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
           +                           +T   ++S     +L      + G    +   
Sbjct: 219 RRYPKVYKMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLY----MMGWVPTEFKR 274

Query: 259 GTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNT----------LSEAVSSDGRLRG 307
            T K + S   +  L A D    +L    + +  L +          L E V   G ++G
Sbjct: 275 STGKPVTSQDVLKLLIADDETPPKLKECATFVQSLRSLVGIQNQLMQLLELVDDKGFVKG 334

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                G ++T R+S      QN   +                              VR C
Sbjct: 335 NWYQTG-TQTFRYSSSSPNMQNFSTRH-----------------------PKWGKRVREC 370

Query: 368 IIASNGKKLVVADLAGIEARVLAW----IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                G  + + DL+ IE  ++AW    +AG+    +    G D +       +    + 
Sbjct: 371 FTPPPGYVMFMGDLSQIELAIVAWYLEILAGDSAMAEGNRQGRDAHDVNTENWYGVTRES 430

Query: 424 VS---KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
                K+ R   K    A  Y      ++ +A   G   ++    +++          + 
Sbjct: 431 NPDEFKQCRPRAKNGAFAANYG---AKYRRLAFTIGCSFEEAKDILETVERATQITPLKQ 487

Query: 481 HHLWMQDQYPE 491
                  Q  +
Sbjct: 488 LVWDTMRQSRD 498


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 88/280 (31%), Gaps = 77/280 (27%)

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           S     DGR+  +L     + TGR S      QN P  E+                    
Sbjct: 740 SNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 780

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T   
Sbjct: 781 -------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMN 833

Query: 416 AFNTPIDKVSKEQ--------------------------RAIGKVMELALGYQ----GGA 445
            +    + V   Q                          R   K++  ++ Y     G +
Sbjct: 834 MYPHVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLS 893

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-------------------HHLWMQ 486
           + +K         +  +  + +    +++  + E+                        +
Sbjct: 894 RDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLTLLGRSRRFPASKSRAQR 953

Query: 487 DQYPEFAVKDKLIGTACELVKKAW--RAKHQGVLQLWKDL 524
           +     A+   + G+A ++   A    + +Q + +L   L
Sbjct: 954 NHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRL 993


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 101/312 (32%), Gaps = 80/312 (25%)

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           S      GR+  +L     + TGR S      QN P  E+                    
Sbjct: 651 SNVSGKRGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 691

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA+ G  L+VAD   +E R+LA +A     ++AF  G D +  T   
Sbjct: 692 -------KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMN 744

Query: 416 AFNTPIDKVSKE--------------------------QRAIGKVMELALGYQ----GGA 445
            +    + V K                           +R   K++  ++ Y     G A
Sbjct: 745 MYPHIHEAVDKGEVLLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLA 804

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD------------------ 487
           + +K         +  + +  +    +++  + E+                         
Sbjct: 805 RDWKVSIEEAKETVNLWYRERQEVLKWQEARKKEAREDGRVHTLLGRARVFPSISHASNA 864

Query: 488 ---QYPEFAVKDKLIGTACELVKKAW--RAKHQGVLQL-WKDLTEGFACVVQEGGSISAR 541
                   A+   + G+A ++   A    ++++ + +L WK L +    V+ EG + SA 
Sbjct: 865 QKRHIERAAINTPVQGSAADVAMCAMLQISRNKRLKELGWKLLLQIHDEVILEGPTESAV 924

Query: 542 RVANVPRLVMRR 553
              ++    M +
Sbjct: 925 VAKDIVIECMSK 936



 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 85/313 (27%), Gaps = 59/313 (18%)

Query: 27  QAVITLCA-YA-----WDDEPVKLW-DRTEQS--AMPSDLLQYLRDETVMCVAHNSLFER 77
              I   + Y+     + +    +W D  +     +      +  +  +  V HN  F++
Sbjct: 226 HGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLVKFKPFFENPEIKKVWHNYSFDK 285

Query: 78  ILFKKTLGIDIPSKRWICTSVL----ARTNGLPSSLKNACLALNFSEHLTKMEEG----K 129
            + +                      +R      SL+                EG     
Sbjct: 286 HVIQNYEVPVCGFHADTMHMARLWNSSRRTEGGYSLEALTGDKRVMSGAQSCFEGLIGKV 345

Query: 130 ALIARFCKGSIDS----------PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177
           ++   F K  +             P +  +    + W     Y   D  +T +L++ L  
Sbjct: 346 SMKTIFGKNKLKKDGSEGKMITVAPVEELQREEREPW---ICYSALDAISTWQLYESLKR 402

Query: 178 ----IPLS-----------DGERDLW----LLDQTINDRGYRIDLDLVLKLQELIAQERK 218
               +P +           D  ++ W     L   +   G  +D   + +++++   E++
Sbjct: 403 KLFHMPWNLNGKPVGKSMLDFYKEYWRPFGELLVRMETEGILVDRAYLAEIEKVAKVEQE 462

Query: 219 KLDEDIVKLT-----DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
                          D    +      LR   F   G         ++  +     +  +
Sbjct: 463 IAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFF---GGIANSKDPDSILPVEKKIKVPNV 519

Query: 274 AKDLILNRLASSG 286
            K +   + A + 
Sbjct: 520 DKVIEEGKKAPTK 532


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 107/362 (29%), Gaps = 86/362 (23%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 726  CKEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 762

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   +A+ G  L+VAD   +E R+LA +      ++AF  G D +  T    +  
Sbjct: 763  ---KIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              D V +                      K +         Q    V         E+ +
Sbjct: 820  VRDAVEE----------------------KKVLLEWHPQPGQDKPPVPLLKDAFGAERRK 857

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +  L     Y + AV   L       V++A     +  L+LW           Q+     
Sbjct: 858  AKMLNFSIAYGKTAV--GLSWDWKVSVREA-----RDTLKLWYR-DRKEVSAWQKKQKAF 909

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
            A     V  L+ R  +          +       KG             R          
Sbjct: 910  ALEKCEVYTLLGRSRQFPNMTHAGPGQ-------KGHV----------ERAAINAP---- 948

Query: 600  NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
              VQ  + D+    M    +N      G+ ++L VHDE++ E P        T+    M+
Sbjct: 949  --VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMS 1006

Query: 653  KN 654
            K 
Sbjct: 1007 KP 1008


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 107/362 (29%), Gaps = 86/362 (23%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 669 CKEGRIHCSLNIN--TETGRLSARTPNLQNQPVLEKDRY--------------------- 705

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A+ G  L+VAD   +E R+LA +      ++AF  G D +  T    +  
Sbjct: 706 ---KIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 762

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             D V +                      K +         Q    V         E+ +
Sbjct: 763 VRDAVEE----------------------KKVLLEWHPQPGQDKPPVPLLKDAFGAERRK 800

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           +  L     Y + AV   L       V++A     +  L+LW           Q+     
Sbjct: 801 AKMLNFSIAYGKTAV--GLSWDWKVSVREA-----RDTLKLWYR-DRKEVSAWQKKQKAF 852

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           A     V  L+ R  +          +       KG             R          
Sbjct: 853 ALEKCEVYTLLGRSRQFPNMTHAGPGQ-------KGHV----------ERAAINAP---- 891

Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
             VQ  + D+    M    +N      G+ ++L VHDE++ E P        T+    M+
Sbjct: 892 --VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMS 949

Query: 653 KN 654
           K 
Sbjct: 950 KP 951


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 85/584 (14%), Positives = 175/584 (29%), Gaps = 164/584 (28%)

Query: 57  LLQYL-RDETVMCVAHNSLFERILFKKTLGIDI-----PSKRW-IC-------------- 95
           L +YL ++E V+ +A N  FE     K     +     P   W  C              
Sbjct: 185 LDEYLFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKK 244

Query: 96  -TSVLARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSP---PYDCTRA 150
            TS        P++ +   + +N FS  L K +     +  F +          Y    A
Sbjct: 245 PTSGWGLK---PATKEIFGVTMNDFSALLKKYK-----VDFFDEIDASKGEGLLYSAEDA 296

Query: 151 NH-VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           ++ +Q ++ + +   +  +    L K        E     +   +   G   D +L  + 
Sbjct: 297 DYALQHYEYWSQIASQIPQYEEWLHK-------IEMPFTRVIGLMEYWGMNWDPNLATQK 349

Query: 210 QELIAQERKKLDEDIVKLTDGIIR------SSRQTYALRMYLFLITGIDLVDMSEGT--- 260
           ++     +++  E I ++             S +T  ++  +F    I +    +     
Sbjct: 350 KQEAEIMQEQAAERIKQVAKETFNVDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASL 409

Query: 261 -----------LKSILSHSNITQLA--------------KDLILNRLASSG--------- 286
                      L++ L+  +  +                KD  L++L             
Sbjct: 410 DQEALIDMAFMLENKLNDIDEEKYLSIPLPENWEIIDPDKDPTLDKLERGAIRIAKREPH 469

Query: 287 ----------SAILKLNTLSEAVSSD------------GRLRGTLQFYGASRTGRWSGCV 324
                       + K+   +  +SS             GR+      +  + TGR +   
Sbjct: 470 PYKEQALEVIDQLKKIQKYTTLLSSHIVGREKYLNFMSGRIHAGYSPF--TETGRLNSFN 527

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+PR +  E                          +R+  +   GK L   D +G 
Sbjct: 528 PNGQNVPRPDNDE------------------------FKIRNFFVPKPGKILFFIDFSGF 563

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++AW +G++   + F  G D++  T +     P D++ K++R   K     + Y G 
Sbjct: 564 ELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKPEDEIVKKERTDAKAGNFGISYGGT 623

Query: 445 AKVFKTMASHCGLDLQQFSQ----------NVKSTSTFEDWEQAESHHLWMQDQ------ 488
               +       +  +   +            K    ++     E+              
Sbjct: 624 EHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMR 683

Query: 489 ---------------YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              A    + G+A +++KK     ++ +
Sbjct: 684 LLPGINSANRRDRGSAERQAANTPVQGSAADIMKKVQNEIYESI 727


>gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group]
          Length = 1986

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 82/545 (15%), Positives = 157/545 (28%), Gaps = 121/545 (22%)

Query: 21   VWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
            V+ Y       + A + D   +++WD  T +    + +++ +R  +V  +  N  F+   
Sbjct: 1420 VY-YCNFPKDLMMAGSNDS--IEMWDELTRR---WNRVIEIMRQNSVKKMTWNLKFQIQA 1473

Query: 80   FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
             K           + C S    +             L+    + K  E    +  F +  
Sbjct: 1474 LK-----------YPCVSCQRLSR------------LHLDYKMLKNVEVLDNLYVFLQPV 1510

Query: 140  IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWL 189
                  D      V  W         ++E TR L   L  L             E  L  
Sbjct: 1511 SVHSGLDICLVAWV-LWPDEESKTVPNLEKTRALCSVLRKLLVSQNLNDLLETIEGPLVN 1569

Query: 190  LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
            +   +   G   D+D  L+ + +I ++ K+L+++  KL      S   T  +   L+   
Sbjct: 1570 VLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLAGKSF-SLNATADIADVLYTHL 1628

Query: 250  GIDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSSDGRLRG 307
             + +     +G L       ++  L     +  +      + KL N    ++ S  +L  
Sbjct: 1629 KLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICSRAQLCS 1688

Query: 308  TLQ--------FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              Q           ++ TGR S      Q                               
Sbjct: 1689 KSQRYIIQGNWLQTSTATGRLSMEEPNLQ------------------------------- 1717

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFN 418
                            LV AD + IE R++A  + +   I+  +    D++    ++   
Sbjct: 1718 ------------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTG 1765

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTFED 474
                 +  ++R   K     + Y  GA                 +Q F +     S++  
Sbjct: 1766 KAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLH 1825

Query: 475  WEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWRAK 513
               A   H    +                          AV     G+A +++K A    
Sbjct: 1826 EAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIKV 1885

Query: 514  HQGVL 518
            H  + 
Sbjct: 1886 HSAIT 1890


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 119/388 (30%), Gaps = 100/388 (25%)

Query: 280 NRLASSGSAILKLNTLSEAVSSD----GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            R++++ +++  L+ L E +  D    GR+  +L     + TGR        QN P    
Sbjct: 611 IRISAAITSV--LSPLIERIKYDEDGFGRIHPSLAL--DTTTGRLCCRKPNLQNPPSAH- 665

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R    A  G  L+V D + +E R+LA ++  
Sbjct: 666 -----------------------NDLYSIRKAFSARPGNTLIVGDYSQLELRILAHMSRC 702

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  I+    G DI+       F                  E+A     G+ V     +H 
Sbjct: 703 ESMIRQLNQGGDIHSQCAVDLF-----------------PEVAEAVANGSVVIDDAEAHP 745

Query: 456 GLD-LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
           G+  ++      +  +   ++  A              A +  L  T    +   W    
Sbjct: 746 GIPSVKTKFSTQRQQAKVMNFSIAYGK------TERTLAEEMDLPVTDIRDMFTRWNNSK 799

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVP-RLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +G ++ WK      A   Q   S+  R       +  +R++         S R       
Sbjct: 800 KG-VERWKAEIIQQARDTQHATSVLGRHRRFPHIKHRLRKYSG------RSERAA----- 847

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
                                      ++Q  + DI    M    +       G+ IV+ 
Sbjct: 848 ------------------------VNFVIQGSAADIAMMAMLRVDRDERLRRMGFKIVMQ 883

Query: 628 VHDEIVSETP-DTPYFSVGTLCSLMTKN 654
           VHDE++ E P +    +V  +  LM   
Sbjct: 884 VHDEVILEGPAENATDAVPIVRDLMEHP 911


>gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1]
 gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1]
          Length = 1046

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
           ++       ++     + V +     ++  +    T+    ++      +  +    ++L
Sbjct: 636 KKNKPEEQIIWSDYKTNKVALDYVNSQAKEAGDKDTEDLTKMLAKFSIVNKISSSFTDSL 695

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            E      +L G     G + T R S      QNLP  E+S   L      + R      
Sbjct: 696 REYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLPA-EKSNTHLFNYKYPIKRMFVSRF 753

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
           P G                KL+  D + +E  +LA +  ED    AF  G+DI+ +  A 
Sbjct: 754 PNG----------------KLINLDYSSLEFHILALVTKEDSMTGAFLEGKDIHTSNAAL 797

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            ++ P + V  EQR   K +   L Y  G      +A   GL L++  + +   + F+  
Sbjct: 798 MYDVPYEDVIVEQRKAAKSIGFGLIYGKGDAA---LAEDLGLSLEEAQEKI--NTFFKSK 852

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIG 500
            + ++                 L G
Sbjct: 853 PRVKAFIDKAHKFAENNGYVTTLNG 877


>gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis]
 gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis]
          Length = 2181

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/484 (14%), Positives = 144/484 (29%), Gaps = 121/484 (25%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            + E  + +    +   G+      + +L + +    K+L+  I +L      +   T A+
Sbjct: 1774 ELEMPIQMSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELHGSRF-NLGSTQAV 1832

Query: 242  RMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
               L    G+         T + IL   +       LILN    S      +  L +   
Sbjct: 1833 AKVL----GLHRKANGRVSTSRQILEKIDSP--ISQLILNYRKLSMLLAKSMQPLLKC-C 1885

Query: 301  SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
               R+ G    Y A  TGR S      QN+ +    E    Q   +              
Sbjct: 1886 QANRVHGQSITYTA--TGRISMSEPNLQNVAKDFHIELGKEQLKISC------------- 1930

Query: 361  SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                RS     + K+ L+ AD   +E R+LA ++ +   ++   + +D++    A     
Sbjct: 1931 ----RSAFAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWNKI 1986

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                VS++ R   K +   +                G+ ++  S+ +K T          
Sbjct: 1987 DESNVSEQLRNGTKQICYGIV--------------YGMGMRSLSEALKCTEQ-------- 2024

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                                    +++ + +   + G+      +          G    
Sbjct: 2025 ----------------------EAQMITEQFHLAYPGIKAYTMKV---VKFARNNG---Y 2056

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
               +    R +   +  +V +   + R+ +                              
Sbjct: 2057 VETITGRRRYLDHINSGEVQLKTQAERQAI-----------------------------N 2087

Query: 600  NIVQAISRDILCEGMKNATKN-------------GYDIVLTVHDEIVSETPDTPYFSVGT 646
            + +Q  + DI    +    KN               ++VL +HDE++ E P      V  
Sbjct: 2088 STIQGSAADIAKSAILRMEKNLGRYREKLGLAKNAVNLVLHLHDELIFEVPTDKAKKVAK 2147

Query: 647  LCSL 650
            + SL
Sbjct: 2148 VLSL 2151


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 37/295 (12%)

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
              P    + C+R+      G  ++ AD + +E R+LA +A +   +    +G D++   
Sbjct: 71  TPMPGPKFAVCIRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCLMSILNSGSDVFKQI 130

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            AK  +  +D V+ EQR   K M   + Y  GA+        C  D   F ++ KS    
Sbjct: 131 AAKWKHVDVDSVTAEQRQQAKQMCYGMIYGIGARALGEQLGVCEEDAAAFMESFKS---- 186

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
             ++  +++ L +  Q  E      L G          R     +               
Sbjct: 187 -QYKGMKNYLLEVVKQCREKGYVQTLTGR---------RRYLPAIHHTNPGARNQAER-- 234

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
           Q   +      A++ +  M +  R + +  P+++R      + + S       +  R +T
Sbjct: 235 QAVNTTVQGSAADLVKTAMVKIDRRLAVEYPATKRSHKHK-EEEESGTAPGRRKSRRLQT 293

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                                    T  G  +VL +HDE++ E        V  L
Sbjct: 294 --------------------STTGFTPPGAFLVLQLHDELIYEVRREDVDQVAQL 328


>gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
 gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
          Length = 516

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 125/417 (29%), Gaps = 80/417 (19%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L   S+ E  +  +   +   G   +  +    +E +  +   L+     L  G + S
Sbjct: 16  QSLFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGKVFS 75

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKS------------------ILSHSNITQLAKD 276
              T  +   LF    I + ++++   +                       + +  ++  
Sbjct: 76  LSSTEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHISHH 135

Query: 277 LILNRLASSGSAIL-----KLNTLSEA-VSSDG----RLRGTLQFYGASRTGRWSGCVFQ 326
             L  L      +       ++ L +    SD     R+  T+Q      TGR S     
Sbjct: 136 HPLPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNMRRIYSTIQQTVVP-TGRISMAFPN 194

Query: 327 PQNLPRQ-------ERSEEILTQTI---------------QALNRGETIADPLGLASDCV 364
            QN+            ++     +I               Q       I          +
Sbjct: 195 LQNISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVSL 254

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTPID 422
           R+    +NG  L+ AD + +E R+L   + +   I+ F      D++     +      +
Sbjct: 255 RNSFTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDYE 314

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTF----ED 474
           KVS E+R   K +   + Y  G     +          + L++F    ++   F    ED
Sbjct: 315 KVSDEERNFAKHLVYGILYGMGINSIASELKVDKEKAKVQLERFKNTYRTLIDFLESIED 374

Query: 475 WEQAESHHLWMQDQYPEF-------------------AVKDKLIGTACELVKKAWRA 512
               +++   +  +   F                   A      GTA ++ K A   
Sbjct: 375 RVFIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGARNSVPQGTAADITKLAMIN 431


>gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis]
 gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis]
          Length = 2086

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/371 (14%), Positives = 117/371 (31%), Gaps = 56/371 (15%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            + E  + +    +   G+      + +L + +    KKL+  I +L      +   T A+
Sbjct: 1679 ELEMPIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEVKIFELHGSRF-NLGSTQAV 1737

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-- 299
               L L          +   +   S   + +L   +    L     +++    +   +  
Sbjct: 1738 AKVLGL--------HRKANGRISTSRQILEKLDSPISQLILDHRKLSMVLAKNMQPLLKC 1789

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                R+ G    Y A  TGR S      QN+ +    +    +   +             
Sbjct: 1790 CQANRVHGQSITYTA--TGRISMSEPNLQNVAKDFLVDLGQEKINISC------------ 1835

Query: 360  ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 RS  ++S     L+ AD   +E R+LA ++ +   +K   + +D++    A    
Sbjct: 1836 -----RSAFVSSNEKHCLLSADFCQLEMRILAHLSQDKALLKVMNSPQDLFTAIAAHWNK 1890

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED 474
                 VS++ R   K +   + Y  G +              +  +QF         +  
Sbjct: 1891 IAESDVSEQLRNGTKQICYGIVYGMGMRSLAESLKCTEQEAQMISEQFHLAYAGIKAYAS 1950

Query: 475  WEQAESHH---------------------LWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                 + +                       +++Q    A+   + G+A ++ K A    
Sbjct: 1951 KVVKFARNNGYVETITGRRRYLDHINSGEPQLKNQAERQAINSTIQGSAADIAKSAILRM 2010

Query: 514  HQGVLQLWKDL 524
             + + +  + L
Sbjct: 2011 EKNIARYREKL 2021



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 32/150 (21%)

Query: 522  KDLTEGFACVVQEGGSISAR--------RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            + L E   C  QE   IS +        +      +   R+   V  +    R L + + 
Sbjct: 1918 RSLAESLKCTEQEAQMISEQFHLAYAGIKAYASKVVKFARNNGYVETITGRRRYLDHINS 1977

Query: 574  KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------------- 620
             G+    N A  Q             + +Q  + DI    +    KN             
Sbjct: 1978 -GEPQLKNQAERQ----------AINSTIQGSAADIAKSAILRMEKNIARYREKLGLAEN 2026

Query: 621  GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
              ++VL +HDE++ E P      V  + SL
Sbjct: 2027 AVNLVLHLHDELIFEVPADKAKKVAKVLSL 2056


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 109/341 (31%), Gaps = 85/341 (24%)

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L E     GR+  ++     + TGR S       N P  E+                  
Sbjct: 548 PLIELTDPSGRIHTSININ--TETGRLSSRNPNLLNQPALEKDRY--------------- 590

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   IA  G KL+VAD   +E RVLA +      I AF  G D +  T 
Sbjct: 591 ---------KIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTV 641

Query: 414 AKAFNTPIDKVSKE------------------------QRAIGKVMELALGYQ----GGA 445
              F    +++ K                         +R   KV+  ++ Y     G A
Sbjct: 642 ITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFA 701

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYP---- 490
           K ++         +  +    K    ++   +  +            + +++  +     
Sbjct: 702 KDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFTQTLLGRYRYLEKYFQQQTR 761

Query: 491 -------EFAVKDKLIGTACELVKKAWRA--KHQGVLQLWKD-LTEGFACVVQEGGSISA 540
                    A+   + G A ++V  A     K+Q +  L    L +    ++ EG   +A
Sbjct: 762 SYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQVHDELILEGPEENA 821

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +    + + +M  +  ++ + LP     +  D K   ++  
Sbjct: 822 QEALKIVKELME-NPFEIQLELP-----LEVDAKIGNNWYE 856



 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 26/148 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-------DDEPVKLWD-RTEQSAMPSDL 57
           IDI+ +S  P+ +             +CA A+        + P    D   + S +    
Sbjct: 82  IDIDVKSETPINRG----------RLICASAFAGPEVNFGNGPRLFIDNFAQNSDLIMLF 131

Query: 58  LQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113
             Y  DE ++ + HN  F++ +F    + +         T  +AR       P     A 
Sbjct: 132 KDYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD---TMHMARLLDPSKQPQEYSLAK 188

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSID 141
           L+L + E   K+ + K +     K ++ 
Sbjct: 189 LSLAYEEE-IKLVKTKRMECLLAKPNLT 215


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 109/341 (31%), Gaps = 85/341 (24%)

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L E     GR+  ++     + TGR S       N P  E+                  
Sbjct: 548 PLIELTDPSGRIHTSININ--TETGRLSSRNPNLLNQPALEKDRY--------------- 590

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   IA  G KL+VAD   +E RVLA +      I AF  G D +  T 
Sbjct: 591 ---------KIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTV 641

Query: 414 AKAFNTPIDKVSKE------------------------QRAIGKVMELALGYQ----GGA 445
              F    +++ K                         +R   KV+  ++ Y     G A
Sbjct: 642 ITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFA 701

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYP---- 490
           K ++         +  +    K    ++   +  +            + +++  +     
Sbjct: 702 KDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFTQTLLGRYRYLEKYFQQQTR 761

Query: 491 -------EFAVKDKLIGTACELVKKAWRA--KHQGVLQLWKD-LTEGFACVVQEGGSISA 540
                    A+   + G A ++V  A     K+Q +  L    L +    ++ EG   +A
Sbjct: 762 SYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQVHDELILEGPEENA 821

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +    + + +M  +  ++ + LP     +  D K   ++  
Sbjct: 822 QEALKIVKELME-NPFEIQLELP-----LEVDAKIGNNWYE 856



 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 26/148 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-------DDEPVKLWD-RTEQSAMPSDL 57
           IDI+ +S  P+ +             +CA A+        + P    D   + S +    
Sbjct: 82  IDIDVKSETPINRG----------RLICASAFAGPEVNFGNGPRLFIDNFAQNSDLIMLF 131

Query: 58  LQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113
            +Y  DE ++ + HN  F++ +F    + +         T  +AR       P     A 
Sbjct: 132 KEYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD---TMHMARLLDPSKQPQEYSLAK 188

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSID 141
           L+L + E   K+ + K +     K ++ 
Sbjct: 189 LSLAYEEE-IKLVKTKRMECLLAKPNLT 215


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 110/369 (29%), Gaps = 94/369 (25%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            S     DGR+  +L     + TGR S      QN P  E+                    
Sbjct: 735  SNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 775

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   IAS G  L+VAD   +E R+LA +A      +AF  G D +  T   
Sbjct: 776  -------KIRQAFIASPGNSLIVADYGQLELRILAHLASCKSMKEAFIAGGDFHSRTAMN 828

Query: 416  AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             +           R   +  E+ L                     Q    V         
Sbjct: 829  MY--------PHIREAVENGEVLL--------------EWHPQPGQEKPPVPLLKDAFAS 866

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH---QGVLQLWKDLTEGFACVV 532
            E+ ++  L     Y + A+           + + W+      Q  + LW +  +      
Sbjct: 867  ERRKAKMLNFSIAYGKTAI----------GLSRDWKVSIEEAQDTVNLWYNDRQEV---- 912

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                     R     R         V  +L  +R+      +   +++        R   
Sbjct: 913  ---------RKWQELRKKEAIQNGYVLTLLGRARKFPVYRSRAQKNHI-------ERAAI 956

Query: 593  YGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                     VQ  + D+    M      +   + G+ ++L +HDE++ E P     +   
Sbjct: 957  NTP------VQGSAADVAMCAMLEISKNQRLKELGWKLLLQIHDEVILEGPSESAENAKD 1010

Query: 647  L-CSLMTKN 654
            +  + M++ 
Sbjct: 1011 IVVNCMSEP 1019



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 70/247 (28%), Gaps = 55/247 (22%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS 107
               + ++   +  D ++  V HN  F+  + +      I    +   T  +AR      
Sbjct: 329 NGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSR 385

Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-------------------PPYD 146
             S   +  AL     +    E K     F K S+                     PP  
Sbjct: 386 RISGGYSLEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVK 445

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW 188
             +    +AW     Y   D  +T +L++ +                    + D  ++ W
Sbjct: 446 ELQMEDREAW---ISYSALDSISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYW 502

Query: 189 ----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRSSRQTY 239
                L   +   G  +D D + +++ +   E++               D    +     
Sbjct: 503 QPFGELLAKMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDT 562

Query: 240 ALRMYLF 246
            LR   F
Sbjct: 563 QLRQLFF 569


>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
 gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
          Length = 2043

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 120/373 (32%), Gaps = 60/373 (16%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  + L    +   G+      + +L + +    +KL+  I +               
Sbjct: 1636 DIEMPIQLTLCHMEFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQHGSRFNLGSSQTVA 1695

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            ++      G+        T    +     + +++ ++  R   +G     +  L +   +
Sbjct: 1696 KV-----LGLHRKANGRVTTSRQVLEKINSPISQLILGYR-KVAGLLAKSIQPLLKCCEA 1749

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+ G    Y A  TGR S      QN+ +                        + + S
Sbjct: 1750 D-RIHGQSITYTA--TGRISMTEPNLQNVAK---------------------EFCIQVGS 1785

Query: 362  DCVRSC----IIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
            D +R       +     + L+ AD   +E R+LA ++ +   ++   + +D+++   A  
Sbjct: 1786 DALRIACRLPFVPKDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHW 1845

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTF 472
                  +VS++ R   K +   + Y  G +              +  +QF Q  K    +
Sbjct: 1846 NKIEESEVSQDLRNSTKHVCYGIVYGMGMRSLAESLNCSEQEARMISEQFHQAYKGIREY 1905

Query: 473  EDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVKKAWR 511
                   + +                       +++Q    A+   + G+A ++ K A  
Sbjct: 1906 TSRVVKFARNQGFVETITGRRRYLDNINSDEEQLKNQAERQAINSTIQGSAADIAKSAIL 1965

Query: 512  AKHQGVLQLWKDL 524
               + + +    L
Sbjct: 1966 KMEKNIERYRDKL 1978



 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 24/139 (17%)

Query: 525  TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
             E      Q   +    R      +   R++  V  +    R L   +   +    N A 
Sbjct: 1886 QEARMISEQFHQAYKGIREYTSRVVKFARNQGFVETITGRRRYLDNINSDEEQLK-NQAE 1944

Query: 585  SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------------GYDIVLTVHDE 631
             Q             + +Q  + DI    +    KN               D+++ +HDE
Sbjct: 1945 RQ----------AINSTIQGSAADIAKSAILKMEKNIERYRDKLVLGDQSVDLIMHLHDE 1994

Query: 632  IVSETPDTPYFSVGTLCSL 650
            ++ E P      +  + SL
Sbjct: 1995 LIFEVPAAKAKKIAKVLSL 2013


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 95/308 (30%), Gaps = 80/308 (25%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +L     + TGR S      QN P  E+                        
Sbjct: 527 GKGGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 563

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   IA+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 564 ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 620

Query: 420 PIDKVSKEQ--------------------------RAIGKVMELALGYQ----GGAKVFK 449
             + + K+Q                          R   K++  ++ Y     G ++ +K
Sbjct: 621 IREAIEKKQVLLEWYPQPGENKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWK 680

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQ 488
              +     +  + +  K    ++   + E+                         ++  
Sbjct: 681 VSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLLGRARVFPSLTDASSSLRGH 740

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL---WKDLTEGFACVVQEGGSISARRVAN 545
               A+   + G+A ++   A     +        WK L +    V+ EG + SA     
Sbjct: 741 VERAAINTPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQVHDEVILEGPTESAEVAKA 800

Query: 546 VPRLVMRR 553
           +    M +
Sbjct: 801 IVVGCMSK 808



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 89/300 (29%), Gaps = 60/300 (20%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLA 100
           V + D      + ++   +  D  +  V HN  F+  + +           +   T  +A
Sbjct: 114 VDVLD-GGGRDLLNEFALFFEDPDIKKVWHNYSFDNHVIENY---GFSVSGFHADTMHMA 169

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEG-----KALIAR------FCKGSIDS------- 142
           R       LK    +L       K+  G     K LI +      F K  +         
Sbjct: 170 RLWDSSRRLKG-GYSLEALTGDQKVMRGAGSCYKELIGKVSMKTIFGKKKLKKDGSEGKM 228

Query: 143 ---PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL------IPLS------------ 181
               P +  +    + W     Y   D  +T +L+K +      +P +            
Sbjct: 229 TIIAPVEELQREEREPW---ICYSALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMF 285

Query: 182 DGERDLW----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGII 232
           D  ++ W     +   +   G  +D   + +++++   E++               D   
Sbjct: 286 DFYQEYWQPFGEILVRMETEGMLVDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKY 345

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      LR  LF   G+        TL        +  + K +   +   +    +KL
Sbjct: 346 MNVGSDTQLRQLLFG--GVPNSKDPLLTLPED-KTFKVPNVDKVIEEGKKTPTKYRNIKL 402


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 107/362 (29%), Gaps = 86/362 (23%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 721  CKEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 757

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   +A+ G  L+VAD   +E R+LA +      ++AF  G D +  T    +  
Sbjct: 758  ---KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 814

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              D V                                    Q  Q+       +D   AE
Sbjct: 815  VRDAV-------------------------EEKKVLLEWHPQPGQDKPPVPLLKDTFGAE 849

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                 M +     A     +G + +   +   A+    L+LW    +  +   ++  +++
Sbjct: 850  RRKAKMLNF--SIAYGKTAVGLSQDWNVEVREARD--TLKLWYRDRKEVSAWQKKQKALA 905

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
              +      L   R   ++       +       KG             R          
Sbjct: 906  LEKCEVYTLLGRSRQFPNM-THAGPGQ-------KGHV----------ERAAINAPG--- 944

Query: 600  NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
               Q  + D+    M    +N      G+ ++L VHDE++ E P        ++    M+
Sbjct: 945  ---QGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKSIVVECMS 1001

Query: 653  KN 654
            K 
Sbjct: 1002 KP 1003



 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 86/298 (28%), Gaps = 51/298 (17%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLA 100
           V + D      M  +   +  D ++  V HN  F+  + +      I    +   T  LA
Sbjct: 320 VDVLDGGRDVLM--EFAPFFEDPSIKKVWHNYSFDNHVIENC---GIKVAGFHADTMHLA 374

Query: 101 RTNGLPS------SLKNACLALNFSEHLTKM--EEGKALIAR-FC--KGSIDSPPYDCTR 149
           R            SL+           + K   + GK  +   F   K   +        
Sbjct: 375 RLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSEGKTIS 434

Query: 150 ANHVQAWQLFGE-----YCKRDVEATRELFKRLI-PLSDGER---------------DLW 188
              V+  Q         Y   D  +T +L++ L   L   E                + W
Sbjct: 435 IEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYW 494

Query: 189 L----LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRSSRQTY 239
                L   +   G  +D   + ++++    ERK   +   K       D    +     
Sbjct: 495 RPFGALLVKMETEGMLVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDN 554

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
            +R   F   GI   +    T     +        + +      +S S  +KL T+ E
Sbjct: 555 QIRQLFFG--GIKNRNKPGETWPQSKTFKVPND--ESIATEGKKTSKSRTIKLFTIVE 608


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 77/272 (28%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             +    +GR+  +L     + TGR S      QN P  E+                    
Sbjct: 841  QDVSGENGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 881

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   +A+ G  L+VAD   +E R+LA +A     + AF  G D +  T   
Sbjct: 882  -------KIRQAFVAAQGNSLIVADYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMN 934

Query: 416  AFNT-----------------PIDKVSK---------EQRAIGKVMELALGYQ----GGA 445
             +                   P ++             +R   K++  ++ Y     G A
Sbjct: 935  MYTHIREAVENGEVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLA 994

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD------------------ 487
            + +K         + ++  + K  S +++  + E+                         
Sbjct: 995  RDWKVSVKEAKETVDRWYSDRKEVSDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGS 1054

Query: 488  ---QYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                    A+   + G+A ++   A     + 
Sbjct: 1055 VKGHIERAAINTPVQGSAADVAMCAMLEISKN 1086


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/503 (17%), Positives = 152/503 (30%), Gaps = 115/503 (22%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
              N   ER   +  +      + W  + +      L  S      AL F        + 
Sbjct: 260 YLFNV--ERKAREDRVHHSKIFREWAASKIGPDGLALNLSSATQLQALFFGGSENLKTKE 317

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD-- 186
           ++   R  K   D  P D   A             +   EA R     L P+ D   D  
Sbjct: 318 QSETVRVVKVPRDEIPEDALHALE----------NQSKAEAQRIRDHLLAPVQDKNIDDL 367

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
             + D  + D     +L       E++ + R  L     + T G++ +   T     +LF
Sbjct: 368 ETMSDDDLRDMLITRELQFAGTRGEMLDRLRADL-----EFTSGVLNAVSPTDQDG-HLF 421

Query: 247 LITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
             T + L    +  +   +++ S   I  +   +              L +L E V +  
Sbjct: 422 TNTTLFLQAYENFGKEGCEALFSLCAIKSIDTMIA-----------TFLTSLQERVDNKS 470

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  +L     + TGR S      QN P                         L   +  
Sbjct: 471 RVHCSLNLN--TETGRLSSRGPNLQNQP------------------------ALEKDTYQ 504

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF------ 417
           +R    AS G  L+VAD   +E R+LA + G    I+AF  G D +  T    F      
Sbjct: 505 IRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKAK 564

Query: 418 --------------NTPIDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                           P   + K+    +R   K +  ++ Y    K    ++   G+ L
Sbjct: 565 VDSGEALLEWDYAKGDPPKPLVKDLFASERRKAKTLNFSIAYG---KTAFGLSDDWGVTL 621

Query: 460 QQFSQNVKS----------------------------TSTFEDWEQAESHHLWMQDQYPE 491
           Q+  + +K+                               + D  +A+S       Q   
Sbjct: 622 QEAEEMLKAWYKARPEVDVWQTQVKLTARNHGYTRTLMGRYRDLPEAKSKRQKFAKQAER 681

Query: 492 FAVKDKLIGTACELVKKAWRAKH 514
            ++   + G A ++   A    +
Sbjct: 682 ASINTPIQGGAADIAMMAMNKIN 704



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 94/297 (31%), Gaps = 42/297 (14%)

Query: 33  CAYAWDDEPVKL--WDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKK------T 83
             Y   + P      D  + +A +  +   +  +   + V HN  F+R +          
Sbjct: 59  FDYGLGEGPGSCLWIDNLDDAAGILQEFKAWFENPRFLKVWHNYGFDRHVMWNEGIDVQG 118

Query: 84  LG---IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE---GKALIARFCK 137
           LG   + +   +  C S +A+  G   SL+     L  S     M+E      L     +
Sbjct: 119 LGGDTMHMARLQDTCRSKMAKGGGY--SLEALTADL-LSRRKQPMKELFGVHRLRKDGSE 175

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK------RLIPL--SDGERDLWL 189
           G++   P   +     ++  ++ +Y   D E T  L +      ++ P   +    D + 
Sbjct: 176 GALVDIPPVESMQRDPESRSMWIKYSCYDAEGTWLLREELEKRLKMKPWIGNKNLWDYYF 235

Query: 190 LDQT--------INDRGYRIDLDL----VLKLQELIAQERKKLDEDIVKLT---DGIIRS 234
           L           +  RG R++       V +          K+  +        DG+  +
Sbjct: 236 LHMRPFAEVLTDMERRGVRVNAKDYLFNVERKAREDRVHHSKIFREWAASKIGPDGLALN 295

Query: 235 SRQTYALRMYLF-LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                 L+   F     +   + SE      +    I + A   + N+  +    I 
Sbjct: 296 LSSATQLQALFFGGSENLKTKEQSETVRVVKVPRDEIPEDALHALENQSKAEAQRIR 352


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 92/259 (35%), Gaps = 46/259 (17%)

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             KL    + S +Q   L+  L  + G+ L  +S+  L     H     + +  +  + A
Sbjct: 132 TKKLKGFNLNSPQQ---LKSKLSAVLGVKLESVSKNALSEFAGHH---PVVQMYLNWKKA 185

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                +  + ++ E +  DG ++ +    GA  TGR +      Q +P+           
Sbjct: 186 EKRRQM--ITSIQEKMRPDGFVKASYMQLGA-ETGRMTCFNPNNQQIPKD---------- 232

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                R C+ A  G  +V AD   +E R+ A +A +   I+AF 
Sbjct: 233 ------------------KQFRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFK 274

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +GED++  T                R I K     L Y  GAK  +  A+   + +    
Sbjct: 275 DGEDLHTVTAEAI-GCT--------RQIAKSANFGLLYGSGAKGLRNYAAGSNVSMTLEE 325

Query: 464 QNVKSTSTFEDWEQAESHH 482
                +  F+++E     H
Sbjct: 326 AQKVRSDWFQEFEGIAKWH 344


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/571 (14%), Positives = 169/571 (29%), Gaps = 138/571 (24%)

Query: 57  LLQYL-RDETVMCVAHNSLFERILFKKTLGIDI-----PSKRW-ICTSVLARTNGLPSSL 109
           L +YL ++E V+ +A N  FE     K     +     P   W  C  + A         
Sbjct: 185 LDEYLFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKK 244

Query: 110 KNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             +   L  +        M +  AL+ ++     D    D ++   +       +Y  + 
Sbjct: 245 PTSGWGLKPATKHIFGVTMNDFAALLKKYKVDFFDEI--DASKGEGLLYSAEDADYALQH 302

Query: 167 VEATRELFKRLIPLSD----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            E   ++  ++    D     E     +   +   G   D +L  + ++     +++  E
Sbjct: 303 YEYWSQIAAQIPRYEDWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAE 362

Query: 223 DIVKLTDGIIR------SSRQTYALRMYLFLITGIDLVDMSEGT--------------LK 262
            I ++             S +T  ++  +F    I +    +                L+
Sbjct: 363 RIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLE 422

Query: 263 SILSHSNITQLA--------------KDLILNRLASSG-------------------SAI 289
           + L+  +  +                KD  L++L                         +
Sbjct: 423 NKLNDIDEEKYLSISLPENWESIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQL 482

Query: 290 LKLNTLSEAVSSD------------GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            K+   +  +SS             GR+      +  + TGR +      QN+PR +  E
Sbjct: 483 KKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDE 540

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  +   GK L   D +G E R++AW +G++ 
Sbjct: 541 ------------------------FKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEV 576

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+ F  G D++  T +        ++ K++R   K     + Y G     +       +
Sbjct: 577 MIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYM 636

Query: 458 DLQQFSQ----------NVKSTSTFEDWEQAESHHLWMQDQ------------------- 488
             +   +            K    ++     E+                           
Sbjct: 637 IRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDR 696

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                 A    + G+A +++KK     ++ +
Sbjct: 697 GSAERQAANTPVQGSAADIMKKVQNEIYESI 727


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 106/365 (29%), Gaps = 92/365 (25%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 725  CDEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 761

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   +A+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 762  ---KIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY-- 816

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ---QFSQNVKSTSTFEDWE 476
                                      +  +       + L+   Q  Q        +D  
Sbjct: 817  --------------------------QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAF 850

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
             AE     M +     A     +G A +       AK    L+LW           Q   
Sbjct: 851  GAERRKAKMLNF--SIAYGKTPVGLARDWKVSVKEAKD--TLKLWYR-DRKEVLAWQMKQ 905

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
               A+    V  L+ R  +        S +       +G             R       
Sbjct: 906  KELAQEKCEVYTLLGRSRRFPNMAHATSGQ-------RGHI----------ERAAINAP- 947

Query: 597  LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                 VQ  + D+    M    +N      G+ ++L VHDE++ E P        ++   
Sbjct: 948  -----VQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVE 1002

Query: 650  LMTKN 654
             M+K 
Sbjct: 1003 CMSKP 1007



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 82/302 (27%), Gaps = 66/302 (21%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLA 100
           V + D      M  +   +  D ++  V HN  F+  + +      I    +   T  LA
Sbjct: 331 VDVLDGGRDVLM--EFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLA 385

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----------------- 143
           R       +         +     M      + +  K S+ +                  
Sbjct: 386 RLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIIS 445

Query: 144 --PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ--------- 192
             P +  + +  + W  +      D  +T  L++ L   S  E+  W  D          
Sbjct: 446 MEPVEVLQRDDREMWICYSSL---DSMSTLRLYESLK--SKLEKKHWTFDGCPRGSMYDF 500

Query: 193 -------------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRS 234
                         +   G  +D   + +++++   +RK   +   K       D    +
Sbjct: 501 YEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMN 560

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                 +R   F   GI+       TL    +               L + G    K  T
Sbjct: 561 VNSDTQIRQLFFG--GIENRCKPGETLPKSRTIKVPND-------GSLIAEGKKTPKYRT 611

Query: 295 LS 296
           + 
Sbjct: 612 IE 613


>gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus]
          Length = 299

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           E  +D     S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ 
Sbjct: 10  EKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFR 69

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNV 466
           +  A+      D V  + R   K +   + Y  GAK                +  F    
Sbjct: 70  SIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRY 129

Query: 467 KSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           K  + F                           +  + + +      A+   + G+A ++
Sbjct: 130 KGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADI 189

Query: 506 VKKAWRA 512
           VK A   
Sbjct: 190 VKIATVN 196


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 104/714 (14%), Positives = 197/714 (27%), Gaps = 170/714 (23%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLA 100
           V + D      M  +   +  D ++  V HN  F+  + +      I    +   T  LA
Sbjct: 331 VDVLDGGRDVLM--EFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLA 385

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----------------- 143
           R       +         +     M      + +  K S+ +                  
Sbjct: 386 RLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIIS 445

Query: 144 --PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ--------- 192
             P +  + +  + W  +      D  +T  L++ L   S  E+  W  D          
Sbjct: 446 MEPVEVLQRDDREMWICYSSL---DSMSTLRLYESLK--SKLEKKHWTFDGCPRGSMYDF 500

Query: 193 -------------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRS 234
                         +   G  +D   + +++++   +RK   +   K       D    +
Sbjct: 501 YEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMN 560

Query: 235 SRQTYALRMYLFL------ITGIDLVD------------MSEGTLKSILSHSNITQLAKD 276
                 +R   F         G  L              ++EG          +  + +D
Sbjct: 561 VNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVED 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-----------------YGASRTGR 319
           L  +   +SG   +  + L       G+L   L +                 +  + T  
Sbjct: 621 LKTDLFTASGWPSVSGDALRSLA---GKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTAS 677

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD---------PLGLASDCVRSCIIA 370
           +           + + +   +    +  +    I++          L      +R   +A
Sbjct: 678 YGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVA 737

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           + G  L+VAD   +E R+LA +A     + AF  G D +  T    +             
Sbjct: 738 APGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY------------- 784

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQ---QFSQNVKSTSTFEDWEQAESHHLWMQD 487
                          +  +       + L+   Q  Q        +D   AE     M +
Sbjct: 785 ---------------QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLN 829

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                A     +G A +       AK    L+LW           Q      A+    V 
Sbjct: 830 F--SIAYGKTPVGLARDWKVSVKEAKD--TLKLWYR-DRKEVLAWQMKQKELAQEKCEVY 884

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
            L+ R  +        S +       +G             R            VQ  + 
Sbjct: 885 TLLGRSRRFPNMAHATSGQ-------RGHI----------ERAAINAP------VQGSAA 921

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
           D+    M    +N      G+ ++L VHDE++ E P        ++    M+K 
Sbjct: 922 DVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKP 975


>gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta)
           [Canis familiaris]
          Length = 576

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 102/348 (29%), Gaps = 61/348 (17%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E         +   G           + ++  +   ++    +L       +       
Sbjct: 132 VEMPSQYCLALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSS----- 186

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
                       D++E  L  + +   +  L    IL     + +    +  L      +
Sbjct: 187 -----------DDIAEDVLNKLKALHPLPGL----ILEWRRITNAITKVVFPLQREKRLN 231

Query: 303 -----GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER------------SEEILTQTIQ 345
                 R+    Q + A  TGR +      QN+PR               S+ +    + 
Sbjct: 232 PFLGMERIYPVSQSHTA--TGRITFMEPNIQNVPRDFEIKMPILVGESPPSQALAKGLLP 289

Query: 346 ALNRG-----------------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
              RG                 E  +D     S  +R   +  +G  ++ AD + +E R+
Sbjct: 290 VYGRGRGKRSCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQLELRI 349

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++ +   I+    G D++ +  A+      + V  + R   K +   + Y  GAK  
Sbjct: 350 LAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSL 409

Query: 449 KTMAS----HCGLDLQQFSQNVKSTSTFE-DWEQAESHHLWMQDQYPE 491
                         ++ F       + F  +  +    + ++Q     
Sbjct: 410 GEQMGIKENDAACYIESFKSRYTGINHFMRETVKNCKRNGFVQTILGR 457


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 103/324 (31%), Gaps = 83/324 (25%)

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           S      GR+  +L     + TGR S      QN P  E+                    
Sbjct: 523 SNLSGKSGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY----------------- 563

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA+ G  L+VAD   +E RVLA +A     + AF  G D +  T   
Sbjct: 564 -------KIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVN 616

Query: 416 AF----------------------NTPIDKVSKE----QRAIGKVMELALGYQ----GGA 445
            +                      + P   + K+    +R   K++  ++ Y     G +
Sbjct: 617 MYPHIREAIEKKRVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLS 676

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------- 489
           + +K   +     +  + +  K    ++   + E+                         
Sbjct: 677 RDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDGRVHTLLGRARVFPSLTDASSS 736

Query: 490 -----PEFAVKDKLIGTACELVKKAW--RAKHQGVLQL-WKDLTEGFACVVQEGGSIS-- 539
                   A+   + G+A ++   A    +K+  + +L WK L +    V+ EG + S  
Sbjct: 737 LRGHVERAAINTPVQGSAADVAMCAMLEISKNNRLKELGWKLLLQVHDEVILEGPTESAE 796

Query: 540 -ARRVANVPRLVMRRHKRDVHIVL 562
            A+ +           K  + + L
Sbjct: 797 VAKAIVVDCMSKPFGGKNFLKVDL 820



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 57/275 (20%)

Query: 26  EQAVITLCA-YA-----WDDEPVKLW-DRTEQS--AMPSDLLQYLRDETVMCVAHNSLFE 76
           +   IT  + Y+     + +    +W D  +     +  +   +     +  V HN  F+
Sbjct: 88  DHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLHEFAPFFESPDIKKVWHNYSFD 147

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG-----KAL 131
             + +      I    +   ++        S   N   +L       K+  G     K L
Sbjct: 148 NHVIENY---GISVSGFHADTMHMARLWDSSRRINGGYSLEALTGDQKVMRGAEPCYKEL 204

Query: 132 IAR------FCKGSIDSPPYDCTRANHVQAWQLFGE-------YCKRDVEATRELFKRL- 177
           I +      F K  +     +          +L  E       Y   D  +T +L+K L 
Sbjct: 205 IGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREAREPWICYSALDAISTLQLYKSLE 264

Query: 178 -----IPLS------------DGERDLW----LLDQTINDRGYRIDLDLVLKLQELIAQE 216
                +P +            D   + W     +   +   G  +D   +   +++   E
Sbjct: 265 SQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRMETEGMLVDRAYLAVTEKVAKAE 324

Query: 217 RKKLDEDIVKLT-----DGIIRSSRQTYALRMYLF 246
           ++       K       D    +      LR  LF
Sbjct: 325 QEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLF 359


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/434 (13%), Positives = 125/434 (28%), Gaps = 122/434 (28%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------ 233
           L   E     +   +   G   D +L  + ++     +++  E I ++            
Sbjct: 119 LHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNIDINTG 178

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT--------------LKSILSHSNITQLA----- 274
            S +T  ++  +F    I +    +                L++ L+  +  +       
Sbjct: 179 KSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYLGVSLP 238

Query: 275 ---------KDLILNRLASSG-------------------SAILKLNTLSEAVSSD---- 302
                    KD  L++L                         + K+   +  +SS     
Sbjct: 239 ENWGNIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSSHIIGR 298

Query: 303 --------GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
                   GR+      +  + TGR +      QN+PR +  E                 
Sbjct: 299 EKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDE----------------- 339

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R+  +   GK L   D +G E R++AW +G++  I+ F  G D++  T +
Sbjct: 340 -------FKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTAS 392

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ---------- 464
                   ++ K++R   K     + Y G     +       +  +   +          
Sbjct: 393 VMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKT 452

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTAC 503
             K    ++     E+                                 A    + G+A 
Sbjct: 453 AYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAA 512

Query: 504 ELVKKAWRAKHQGV 517
           +++KK     ++ +
Sbjct: 513 DIMKKVQNEIYESI 526


>gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST]
 gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST]
          Length = 1997

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/427 (14%), Positives = 134/427 (31%), Gaps = 51/427 (11%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E  + L   +    G+ +D + +  L   +   R ++ E+  KL          + A+ 
Sbjct: 1565 REMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEEARKLNGNQRLDFGSSRAVA 1624

Query: 243  MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS- 301
              L L  G         T++ +L        A  +   ++ S+ +    +  L   V   
Sbjct: 1625 KALRLAGG--NDRKQCRTVRQVLERLESPLAALVIAYRKIESNLTRT--IEPLYRIVRPG 1680

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
              R+ G  + +  + TGR +      Q        +  +   +     G   A P   + 
Sbjct: 1681 SNRVHG--RSFCFTSTGRITMHEPNLQ----TVVKDFTVPARLTEGGGGGGDAPPPLFSC 1734

Query: 362  DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-----------DIYV 410
                +C     G  L+ AD   +E  +L  ++ +   + A   G            D++ 
Sbjct: 1735 RSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALGGGGNEAPGRTEARSDVFR 1794

Query: 411  TTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMAS--------------HC 455
               A+  +   +  VS E R   K +   + Y  G +                       
Sbjct: 1795 ALAARWNHYERESDVSDELRNRTKAIVYGVIYGMGVRAMAAELQLDEDAARTLMEQFHAT 1854

Query: 456  GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
              +++++ + V   +    +               S +   + +    AV   + G+A +
Sbjct: 1855 YPEIRRYIERVVRLTRQLGYIETLTGRRRHLPAITSENARERSEAERQAVCTTIQGSAAD 1914

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            ++K A     + + +    L       V     +    +  VPR  + +  + +   + +
Sbjct: 1915 ILKNAIVRMRRNLRKYRNVLELERIRFVLH---MHDELIYEVPRSQLHKIAKILKSSMEN 1971

Query: 565  SRRLVYS 571
              +L   
Sbjct: 1972 CAKLSVP 1978



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 61/212 (28%), Gaps = 38/212 (17%)

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            D+ Q E   L    Q P+        G       +A     + +   W           +
Sbjct: 1753 DFCQLELSILTHLSQDPQLMAALGGGGNEAPGRTEARSDVFRALAARWNHYERESDVSDE 1812

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL------VYSDVKGDCSYLNTATSQL 587
                  A     +  + +R    ++ +   ++R L       Y +++     +   T QL
Sbjct: 1813 LRNRTKAIVYGVIYGMGVRAMAAELQLDEDAARTLMEQFHATYPEIRRYIERVVRLTRQL 1872

Query: 588  MRERTYGGK-------LTENI--------------VQAISRDILCEGMKN---------- 616
                T  G+        +EN               +Q  + DIL   +            
Sbjct: 1873 GYIETLTGRRRHLPAITSENARERSEAERQAVCTTIQGSAADILKNAIVRMRRNLRKYRN 1932

Query: 617  -ATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                     VL +HDE++ E P +    +  +
Sbjct: 1933 VLELERIRFVLHMHDELIYEVPRSQLHKIAKI 1964


>gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
 gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
          Length = 689

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 95/321 (29%), Gaps = 40/321 (12%)

Query: 169 ATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +   L P     E  +  L   +   G  +D   + +    + Q  + L      L
Sbjct: 265 VRVRVQPWLRPQAVQVEMQVCWLLAQMEAVGMAVDTAGLGRQAAAVRQRMEALTSAASSL 324

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             G   +   +  L + L+    +         +    S  +   +T+ AK ++  R+  
Sbjct: 325 LGGRTINLGSSAQLAVVLYDELELPPPVPQGQRDAAGVSRTAVPGVTERAKQVVGTRMDG 384

Query: 285 SGSAILKLNTLSEAVSS--------DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           + +     +                  RLR   Q             V  P     +   
Sbjct: 385 TAAGAELDDGGGGGGGGGRRGPGGRWNRLRRGFQ------WAVTKYEVVVPLGDTTEGSP 438

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                +    + RG+ +           R+  +A  G+ LV AD + IE R+LA ++G+ 
Sbjct: 439 CGGGGEEGAGVLRGDRLVVVA-------RNAFVAPPGRLLVAADYSQIELRLLAHMSGDL 491

Query: 397 WKIKAFANGE-------------DIYVTTYAKAF--NTPIDKVSKEQRAIGKVMELALGY 441
              +    G              D +    A      T    VS   R   K +   + Y
Sbjct: 492 RLQELLKRGVEQSEGRGGGGGGTDAFRHIAASWLRPGTAPADVSSRDREQVKRVVYGIIY 551

Query: 442 QGGAKVFKTMASHCGLDLQQF 462
              A+      +  G+ L++ 
Sbjct: 552 GMTAQGLAQQLAEYGVGLEEA 572


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 106/365 (29%), Gaps = 92/365 (25%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 578 CDEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 614

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 615 ---KIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY-- 669

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ---QFSQNVKSTSTFEDWE 476
                                     +  +       + L+   Q  Q        +D  
Sbjct: 670 --------------------------QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAF 703

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            AE     M +     A     +G A +       AK    L+LW           Q   
Sbjct: 704 GAERRKAKMLNF--SIAYGKTPVGLARDWKVSVKEAKD--TLKLWYR-DRKEVLAWQMKQ 758

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
              A+    V  L+ R  +        S +       +G             R       
Sbjct: 759 KELAQEKCEVYTLLGRSRRFPNMAHATSGQ-------RGHI----------ERAAINAP- 800

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                VQ  + D+    M    +N      G+ ++L VHDE++ E P        ++   
Sbjct: 801 -----VQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVE 855

Query: 650 LMTKN 654
            M+K 
Sbjct: 856 CMSKP 860



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 75/270 (27%), Gaps = 59/270 (21%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLA 100
           V + D      M  +   +  D ++  V HN  F+  + +      I    +   T  LA
Sbjct: 184 VDVLDGGRDVLM--EFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLA 238

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----------------- 143
           R       +         +     M      + +  K S+ +                  
Sbjct: 239 RLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIIS 298

Query: 144 --PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ--------- 192
             P +  + +  + W  +      D  +T  L++ L   S  E+  W  D          
Sbjct: 299 MEPVEVLQRDDREMWICYSSL---DSMSTLRLYESLK--SKLEKKHWTFDGCPRGSMYDF 353

Query: 193 -------------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRS 234
                         +   G  +D   + +++++   +RK   +   K       D    +
Sbjct: 354 YEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMN 413

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
                 +R   F   GI+       TL   
Sbjct: 414 VNSDTQIRQLFFG--GIENRCKPGETLPKS 441


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/571 (13%), Positives = 169/571 (29%), Gaps = 138/571 (24%)

Query: 57  LLQYL-RDETVMCVAHNSLFERILFKKTLGIDI-----PSKRW-ICTSVLARTNGLPSSL 109
           L +YL ++E V+ +A N  FE     K     +     P   W  C  + A         
Sbjct: 185 LDEYLFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKK 244

Query: 110 KNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             +   L  +        M +  AL+ ++     D    D ++   +       +Y  + 
Sbjct: 245 PTSGWGLKPATKHIFGVTMNDFSALLKKYKVNFFDEI--DASKGEGLLYSAEDSDYAVQH 302

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQT----INDRGYRIDLDLVLKLQELIAQERKKLDE 222
            E   ++  ++    +    + +        +   G   D +L  + ++     +++  E
Sbjct: 303 YEYWSQIAAQIPRYEEWLHKIEMSFTRAIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAE 362

Query: 223 DIVKLTDGIIR------SSRQTYALRMYLFLITGIDLVDMSEGT--------------LK 262
            I ++             S +T  ++  +F    I +    +                L+
Sbjct: 363 RIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLE 422

Query: 263 SILSHSNITQLA--------------KDLILNRLASSG-------------------SAI 289
           + L+  +  +                KD  L++L                         +
Sbjct: 423 NKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQL 482

Query: 290 LKLNTLSEAVSSD------------GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            K+   +  +SS             GR+      +  + TGR +      QN+PR +  E
Sbjct: 483 KKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDE 540

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  +   GK L   D +G E R++AW +G++ 
Sbjct: 541 ------------------------FKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEV 576

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+ F  G D++  T +        ++ K++R   K     + Y G     +       +
Sbjct: 577 MIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYM 636

Query: 458 DLQQFSQ----------NVKSTSTFEDWEQAESHHLWMQDQ------------------- 488
             +   +            K    ++     E+                           
Sbjct: 637 IRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDR 696

Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                 A    + G+A +++KK     ++ +
Sbjct: 697 GSAERQAANTPVQGSAADIMKKVQNEIYESI 727


>gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 193

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 33/209 (15%)

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  +++  + +L +   Q    L+++I  L       +     L   LF   G++
Sbjct: 6   DMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIA-SPKQLSDVLFNKMGLN 64

Query: 253 LVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTLSEAVSS-DGRL 305
               S+ +     ++  +  L ++       ILN    S       + L + V   DGR+
Sbjct: 65  KKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRI 124

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +     A+ TGR S      QN+P +                            + +R
Sbjct: 125 HTS-FSTTATATGRLSSSNPNLQNIPIRS------------------------EEGNLIR 159

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAG 394
              IA  G K++ AD + IE R+LA +A 
Sbjct: 160 QAFIAPKGHKIISADYSQIELRLLAHVAN 188


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 144/449 (32%), Gaps = 98/449 (21%)

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQT--INDRG----YRIDLDLV-------LKLQ 210
            R + A  ++++  +P +  E D   +D    I + G      +D DL         +  
Sbjct: 33  CRALPAMAQMWRVGLPWNREELDQCRIDYEDDIKELGNEFIRELDNDLPSGKKLPRNEDG 92

Query: 211 ELIAQERKKLDEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
               + + +  + +   K     I+SS+Q   L   L L+ G   V+      K  ++  
Sbjct: 93  SFNLRAKDQGSKRLGTKKYAGFNIKSSKQ---LLEKLELVLGYTPVNND---GKPSVAKD 146

Query: 269 NITQLAKDLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            +   A D    +   +     K    + ++ + +S+DG +R +    GA  TGR S   
Sbjct: 147 ALKNCAADSPTIQTLMTWKRREKRRQMIESIQDKMSNDGFVRASYMQLGAD-TGRMSSIK 205

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              Q +PR                                R C+ A  G K+V AD + +
Sbjct: 206 PNNQQIPRDSE----------------------------FRQCVQAPQGWKIVDADFSQM 237

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+ A +A +     AF  GED++  T  +             R I K     L Y  G
Sbjct: 238 ELRLAAALAKDKNMTAAFQRGEDLHDYTAEQM-GCD--------RQIAKSANFGLLYGAG 288

Query: 445 AKVFKTMASHCGLDL----------------------QQFSQNVKSTSTFEDWEQ----- 477
           A+  +  A   G+ +                      Q+    +  ++  ++W +     
Sbjct: 289 AEGLRKYAGSSGVIMTNDEAVKIRDNWLTTYSGIRDWQREMNYLSRSTEGDEWPETRVPV 348

Query: 478 -AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                 L              + G    ++K A          LW  + E     V+   
Sbjct: 349 SNMRRFLKGDLNRTTVRCNTPIQGAGAAILKCALGN-------LWDKVKETGEDKVRIAA 401

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSS 565
           ++    +  V   +       +   + ++
Sbjct: 402 AVHDELILLVKEDLADDWAEILKTTMENA 430


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 111/368 (30%), Gaps = 90/368 (24%)

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L +   S+ RL  ++     + TGR S      QN P  E+                  
Sbjct: 1062 PLQKLADSNSRLHTSINVN--TETGRLSSKKPNLQNQPALEKDRY--------------- 1104

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R       G  L+VAD   +E R+LA I      I AF  G D +  T 
Sbjct: 1105 ---------KIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMITAFQVGGDFHSRTA 1155

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
               +    + + +         E+ L + G  +  K +  +     ++ ++ +  +  + 
Sbjct: 1156 MGMYPHVKEAIDRG--------EVLLEWDGEGEPPKPLLKNVYASERRKAKTLNFSIAYG 1207

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                  S    +     +  +                          W +         +
Sbjct: 1208 KTAHGLSQDWGVTLNEAKETLNR------------------------WYE--------DR 1235

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                +  R+                  ++   R+L   D+KG+      A     R    
Sbjct: 1236 PEVLVWQRKTIETAHKY-----GWTRTLMGRYRQL--PDIKGNKGMKGHA----ERASIN 1284

Query: 594  GGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                    +Q  + DI+ + M     N      G+ +++ +HDE++ E P+       ++
Sbjct: 1285 TP------LQGGAADIVMKAMLIIEDNKRLKELGFKLIMQIHDELILEGPEQHADEARSI 1338

Query: 648  -CSLMTKN 654
              +LM+  
Sbjct: 1339 MMNLMSNP 1346



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 94/298 (31%), Gaps = 55/298 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP------------VKLWDRTEQS 51
           + ID++  SP    K             +  ++    P            V + D  E  
Sbjct: 663 IDIDLKKFSPIGHGK-------------MICFSIYCGPQVKFHDGNSRVWVDVMDDIEGD 709

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRW-ICTSVL--ARTNGLPS 107
            +     +Y  DE+++ V HN  F+R +F    + +            +   +R N    
Sbjct: 710 EILQVFKEYFEDESILKVWHNYAFDRHIFYNHGINVKGFGGDTLHMARLWNASRMNSGGY 769

Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKR 165
           SL+      LN  +   K   G   I    +           R      + L + EY   
Sbjct: 770 SLEALSKELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSL 829

Query: 166 DVEATRELFKRL-IPLSDGERD----LW-----------LLDQTINDRGYRIDLDLVLKL 209
           D E T  L + + I L D E +    +W            L   +  RG ++D+D +  L
Sbjct: 830 DSELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSL 889

Query: 210 QELIAQERKKLDEDIVKLT-----DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           +E    + ++  +  +        D    +      ++   F          ++ +L 
Sbjct: 890 EEKAYTDMEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPV---QNKKTKESLP 944


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/578 (13%), Positives = 170/578 (29%), Gaps = 152/578 (26%)

Query: 57  LLQYL-RDETVMCVAHNSLFERILFKKTLGIDI-----PSKRW-ICTSVLARTN----GL 105
           L +YL ++E V+ +A N  FE     K     +     P   W  C  + A         
Sbjct: 185 LDEYLFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKK 244

Query: 106 PSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSP---PYDCTRANH-VQA 155
           P+S      A         ++    ++  K  +  F +          Y    +++ VQ 
Sbjct: 245 PTSGWGLKPATKHIFGVTMNDFSALLK--KYKVNFFDEIDASKGEGLLYSAEDSDYAVQH 302

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           ++ + +   +       + +    L   E     +   +   G   D +L  + ++    
Sbjct: 303 YEYWSQIAAQ-------ISRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEI 355

Query: 216 ERKKLDEDIVKLTDGIIR------SSRQTYALRMYLFLITGIDLVDMSEGT--------- 260
            +++  E I ++             S +T  ++  +F    I +    +           
Sbjct: 356 MQEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALI 415

Query: 261 -----LKSILSHSNITQLA--------------KDLILNRLASSG--------------- 286
                L++ L+  +  +                KD  L++L                   
Sbjct: 416 DMAFMLENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQA 475

Query: 287 ----SAILKLNTLSEAVSSD------------GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 + K+   +  +SS             GR+      +  + TGR +      QN+
Sbjct: 476 LEVIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNV 533

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR +  E                          +R+  +   GK L   D +G E R++A
Sbjct: 534 PRPDNDE------------------------FKIRNFFVPKPGKILFFIDFSGFELRLMA 569

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           W +G++   + F  G D++  T +        ++ K++R   K     + Y G     + 
Sbjct: 570 WKSGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQF 629

Query: 451 MASHCGLDLQQFSQ----------NVKSTSTFEDWEQAESHHLWMQDQ------------ 488
                 +  +   +            K    ++     E+                    
Sbjct: 630 TFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGIN 689

Query: 489 ---------YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                        A    + G+A +++KK     ++ +
Sbjct: 690 SANRRDRGSAERQAANTPVQGSAADIMKKVQNEIYESI 727


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group]
          Length = 560

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 106/365 (29%), Gaps = 92/365 (25%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 253 CDEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 289

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 290 ---KIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY-- 344

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ---QFSQNVKSTSTFEDWE 476
                                     +  +       + L+   Q  Q        +D  
Sbjct: 345 --------------------------QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAF 378

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            AE     M +     A     +G A +       AK    L+LW           Q   
Sbjct: 379 GAERRKAKMLNF--SIAYGKTPVGLARDWKVSVKEAKD--TLKLWYR-DRKEVLAWQMKQ 433

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
              A+    V  L+ R  +        S +       +G             R       
Sbjct: 434 KELAQEKCEVYTLLGRSRRFPNMAHATSGQ-------RGHI----------ERAAINAP- 475

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                VQ  + D+    M    +N      G+ ++L VHDE++ E P        ++   
Sbjct: 476 -----VQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVE 530

Query: 650 LMTKN 654
            M+K 
Sbjct: 531 CMSKP 535


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/578 (13%), Positives = 170/578 (29%), Gaps = 152/578 (26%)

Query: 57  LLQYL-RDETVMCVAHNSLFERILFKKTLGIDI-----PSKRW-ICTSVLARTN----GL 105
           L +YL ++E V+ +A N  FE     K     +     P   W  C  + A         
Sbjct: 179 LDEYLFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKK 238

Query: 106 PSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSP---PYDCTRANH-VQA 155
           P+S      A         ++    ++  K  +  F +          Y    +++ VQ 
Sbjct: 239 PTSGWGLKPATKHIFGVTMNDFSALLK--KYKVNFFDEIDASKGEGLLYSAEDSDYAVQH 296

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           ++ + +   +       + +    L   E     +   +   G   D +L  + ++    
Sbjct: 297 YEYWSQIAAQ-------ISRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEI 349

Query: 216 ERKKLDEDIVKLTDGIIR------SSRQTYALRMYLFLITGIDLVDMSEGT--------- 260
            +++  E I ++             S +T  ++  +F    I +    +           
Sbjct: 350 MQEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALI 409

Query: 261 -----LKSILSHSNITQLA--------------KDLILNRLASSG--------------- 286
                L++ L+  +  +                KD  L++L                   
Sbjct: 410 DMAFMLENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQA 469

Query: 287 ----SAILKLNTLSEAVSSD------------GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 + K+   +  +SS             GR+      +  + TGR +      QN+
Sbjct: 470 LEVIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNV 527

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR +  E                          +R+  +   GK L   D +G E R++A
Sbjct: 528 PRPDNDE------------------------FKIRNFFVPKPGKILFFIDFSGFELRLMA 563

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           W +G++   + F  G D++  T +        ++ K++R   K     + Y G     + 
Sbjct: 564 WKSGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQF 623

Query: 451 MASHCGLDLQQFSQ----------NVKSTSTFEDWEQAESHHLWMQDQ------------ 488
                 +  +   +            K    ++     E+                    
Sbjct: 624 TFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGIN 683

Query: 489 ---------YPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                        A    + G+A +++KK     ++ +
Sbjct: 684 SANRRDRGSAERQAANTPVQGSAADIMKKVQNEIYESI 721


>gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus]
 gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus]
          Length = 1177

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/437 (14%), Positives = 143/437 (32%), Gaps = 62/437 (14%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG---IIRSSRQTY 239
             E  + +    +   G+  D   +  L   +   ++++ E + +L  G      S+R+  
Sbjct: 769  REMPIHVALARMELVGFPADGAKLGALIARLKAAKERIAERVRQLNGGRKLDFGSTREVA 828

Query: 240  ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            A+        G             +L   +    A  +   ++ S+ S    +  L   +
Sbjct: 829  AVLKVPKDRNGRARTSRQ------VLERIDSPLAALVIAWRKIDSNLSRT--IEPLGRGI 880

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                R+ G+   +  + TGR S      Q +                +       +P  +
Sbjct: 881  VGGRRIYGSSYCF--TSTGRISMHEPNLQTV----------------VKDFRVEIEPGTV 922

Query: 360  ASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 R      +  K L+ AD   +E  VL  ++ +   +    +G+D++    AK  +
Sbjct: 923  EMFSCRGTFACEDSSKVLISADFCQLELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNH 982

Query: 419  TPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMAS--------------HCGLDLQQFS 463
               + +VS E R   K +   + Y  GA+      +                  ++++++
Sbjct: 983  IEDEREVSDELRNYTKAIVYGVIYGMGARSMAAELNVDEDTARTLMEQFHATYPEIRRYA 1042

Query: 464  QNVKSTSTFEDW-EQAESHHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRA 512
            + V   +    + E       ++          + +    AV   + G+A +++K A   
Sbjct: 1043 EKVVQVTRERGYIETLTGRRRYLPAIHSTDSTKRSEAERQAVCTTVQGSAADILKNAILR 1102

Query: 513  KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS- 571
              + + +  + L  G   +V     +    +   PR   R+  + +   + +   L    
Sbjct: 1103 MARNLRKYRERLALGEVELVLH---MHDELIFEAPRDQARKVGKILKSSMENCANLSLPL 1159

Query: 572  --DVKGDCSYLNTATSQ 586
               VK   S+      Q
Sbjct: 1160 RVKVKSGPSWGELVEIQ 1176



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 38/181 (20%)

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
             V K+ +   +G+   W  + +      +      A     +  +  R    ++++   +
Sbjct: 964  AVMKSGKDVFRGIAAKWNHIEDEREVSDELRNYTKAIVYGVIYGMGARSMAAELNVDEDT 1023

Query: 565  SRRLV--YSDVKGDCSYLNTATSQLMRERTYGGKLTE----------------------- 599
            +R L+  +     +         Q+ RER Y   LT                        
Sbjct: 1024 ARTLMEQFHATYPEIRRYAEKVVQVTRERGYIETLTGRRRYLPAIHSTDSTKRSEAERQA 1083

Query: 600  --NIVQAISRDILCEGMKNATKN-----------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                VQ  + DIL   +    +N             ++VL +HDE++ E P      VG 
Sbjct: 1084 VCTTVQGSAADILKNAILRMARNLRKYRERLALGEVELVLHMHDELIFEAPRDQARKVGK 1143

Query: 647  L 647
            +
Sbjct: 1144 I 1144


>gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Megamonas hypermegale ART12/1]
          Length = 215

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 25/156 (16%)

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
           +A ++ +   I AF + +DI+  T A+ F  PID+V+ E R   K +   + Y     G 
Sbjct: 1   MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGIIYGISAFGL 60

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------- 488
           AK         G  +  + Q       F      ++H                       
Sbjct: 61  AKNLHISPKEAGEYIDNYLQECSGVKNFMHEIVEKAHQDGFVTTLFGRRRYLPAIKSSNF 120

Query: 489 -----YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                    A+   + GTA +++K A     + + +
Sbjct: 121 NQRALAERMAMNTPIQGTAADIIKIAMNRASEAIKE 156



 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           +Q  + DI+   M  A++          I+L VHDE+V E        V  +
Sbjct: 135 IQGTAADIIKIAMNRASEAIKEAKLKSRILLQVHDELVLEVVKEEIEKVSEI 186


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 102/371 (27%), Gaps = 95/371 (25%)

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L     S+ RL  ++     + TGR S      QN P  E+                  
Sbjct: 1547 PLQRLADSNHRLHTSVNVN--TETGRLSSRRPNLQNQPALEKDRY--------------- 1589

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R       G  LVVAD   +E R+L  I      + AF  G D +  T 
Sbjct: 1590 ---------KIRKAFTCEPGNTLVVADYGQLELRLLGHITNCKSMLDAFRVGGDFHSRTA 1640

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
               +           RA     E+ L        +    +     L+    + +  +   
Sbjct: 1641 MGMY--------PHVRAAVDAGEVLL-------EWDGEGAPPKPLLKDKFASERRKAKTL 1685

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH---QGVLQLWKDLTEGFAC 530
            ++  A                     G     + K W       Q  L  W +       
Sbjct: 1686 NFSIAY--------------------GKTAHGLSKDWNVTLSEAQNTLNRWYEDRPEVLL 1725

Query: 531  VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
              +    I+ +             K+    ++   R L   D+          +    R 
Sbjct: 1726 WQRSTIQIAHQ-------------KKWTRTLMGRYRLL--PDIDSKARGFVGHS---ERA 1767

Query: 591  RTYGGKLTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSV 644
                       +Q  + DI+ + M          + GY +++ +HDE++ E P+      
Sbjct: 1768 SINTP------LQGGAADIVMKAMLIIEQDARLKELGYRLIMQIHDELILEGPEEHAPEA 1821

Query: 645  GTLC-SLMTKN 654
              +   LM   
Sbjct: 1822 RDIVIKLMGNP 1832



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 89/261 (34%), Gaps = 54/261 (20%)

Query: 32   LCAYAWDDEPVKLWDRTEQSAMPSDLL------------QYLRDETVMCVAHNSLFERIL 79
            +  ++    P    D    S +  D+L            +Y  DE++  V HN  F+R +
Sbjct: 1163 IICFSIYCGPD--IDFGTGSRIWVDILGSNGDEILQIFKEYFEDESIFKVWHNYAFDRHV 1220

Query: 80   FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            F      +I    +   ++L       S +     +L         +    +   F +  
Sbjct: 1221 F---YNHNIDVVGFGGDTMLMARLWDASRMMRGGYSLEGLTKDLLDKHKTNMDDLFGQPK 1277

Query: 140  IDS----------PP--YDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGER- 185
            + S          PP  +    + H+  W    EY  RD E T  L + L   L   E  
Sbjct: 1278 LKSDGTPGKGIILPPLEHLQRSSKHLTKW---IEYSSRDAEVTWMLRENLHKKLMTMEWI 1334

Query: 186  ----DLW-----------LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                ++W            L   +  RG ++DL+ +  ++ +  ++  + +E+  +   G
Sbjct: 1335 GPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVEVIAQRDITEHNENFRRWALG 1394

Query: 231  IIRSSR-----QTYALRMYLF 246
               + +         ++ +LF
Sbjct: 1395 YCENVKHMNIDSDAQVQQFLF 1415


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 105/308 (34%), Gaps = 80/308 (25%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 728  CKEGRIHCSLNIN--TETGRLSARTPSLQNQPALEKDRY--------------------- 764

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-- 417
                +R   +A+ G  L+VAD   +E R+LA +      ++AF  G D +  T    +  
Sbjct: 765  ---KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 821

Query: 418  --------------------NTPIDKVSKE----QRAIGKVMELALGYQ----GGAKVFK 449
                                + P   + K+    +R   K++  ++ Y     G ++ + 
Sbjct: 822  VRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWN 881

Query: 450  TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYP------------ 490
                     L+ + ++ K  S ++  ++A +         L    Q+P            
Sbjct: 882  VEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQKSH 941

Query: 491  --EFAVKDKLIGTACELVKKAW--RAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVAN 545
                A+   + G+A ++   A     ++  + +L W+ L +    V+ EG + SA     
Sbjct: 942  VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKA 1001

Query: 546  VPRLVMRR 553
            +    M +
Sbjct: 1002 IVVECMSK 1009


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 96/344 (27%), Gaps = 84/344 (24%)

Query: 292  LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            L  L E V    R+  +L     + TGR S      QN P  E+ +              
Sbjct: 1158 LQPLQELVDEKSRVHCSLNLN--TETGRLSARKPNLQNQPALEKDQY------------- 1202

Query: 352  TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        +R+   A  G  LVVAD   +E R+LA I      I AF  G   +  
Sbjct: 1203 -----------KIRAAFRAEEGNTLVVADYGQLELRLLAHITDCKSMITAFKEGGCFHSR 1251

Query: 412  TYAKAFNTPIDKVSKE------------------------QRAIGKVMELALGYQG---- 443
            T    F+   + V K                         +R   K +  ++ Y      
Sbjct: 1252 TAVGMFDHVKEAVDKGEVLLEWDYSKGEPPKPLVKDVFASERRQAKTLNFSIAYGKTGHG 1311

Query: 444  --------------GAKVFKTMASHCGLDLQQFSQNVKSTST-------FEDWEQAESHH 482
                            K +           +Q  QN K T         +       S+ 
Sbjct: 1312 LFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQNAKDTGFSRTLMGRYRKLPDITSND 1371

Query: 483  LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                      A+   + G A ++   A      G+++       G+  ++Q    +    
Sbjct: 1372 RGKVGHGTRAAINTPIQGGAADVAMVAMI----GIVRSPLLKKLGWKLLLQVHDEVILEG 1427

Query: 543  VANVPRLVMRRHKRDVH-----IVLPSSRRLVYSDVKGDCSYLN 581
                 +  +    R +      I L   R  +  D K   ++ +
Sbjct: 1428 PEESAKEALAETVRCMQQPWDGIGLRELRVDLLVDAKSAKTWYD 1471



 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 95/306 (31%), Gaps = 54/306 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCA---YAWDDEPVKL--WD-RTEQSAMPSDLL 58
             D E  S   L   G   +     I++       + + P K+   D     +    + L
Sbjct: 650 ACDTEV-SEINLKDHGPVGHGRVTCISIYGGPDLDFGEGPGKILWVDNLGAAAGTLEEFL 708

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC------TSVLARTNGLPSSLKNA 112
            +   E    V HN  F+R +   +   +   +R  C      T  +AR           
Sbjct: 709 PFFASEKHKKVWHNYGFDRHVMFNS-PDNREEQRIDCVGFAGDTMHMARLWDTSMEKYAG 767

Query: 113 CLALNFSEHLTK-MEEGKA---LIARFCKGSIDS----------PPYDCTRANHVQAWQL 158
               +      K + EG+    +   F    +            PP D       +    
Sbjct: 768 DTGFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEI-QTRPEVRPR 826

Query: 159 FGEYCKRDVEAT----RELFKRLIPLSDGE-------RDLW-----LLDQTINDRGYRID 202
           F EY   D +AT    REL ++L  +S  +        +++      L   +   G  ++
Sbjct: 827 FIEYSAYDAQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYVE 886

Query: 203 LDLVLKLQELIAQERKKLDEDI-----VKLT-DGIIRSSRQTYALRMYLFLITGIDLVDM 256
               L+  E+ A+  KK  E+       K+       +   +  ++  LF   G      
Sbjct: 887 AKDYLQDIEVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLF---GGATNPK 943

Query: 257 SEGTLK 262
           ++  L 
Sbjct: 944 TKEKLP 949


>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 1564

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 89/268 (33%), Gaps = 45/268 (16%)

Query: 193  TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
             + DRG R+D DLV +L    A++   L      +    + +      +   L    G  
Sbjct: 1193 RVADRGLRLDADLVERLH---AEQTAALTAASEHIRAFGVDNPGSDQQVAAAL-ERLGAP 1248

Query: 253  LV-------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGR 304
            L         +++G L  + +            L+   +     L L    + V + DGR
Sbjct: 1249 LPRTKTGRPSVAKGVLDPLKNVDGEIGDLVRARLDYQTAENRLGLFLEPYRQLVTNGDGR 1308

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
             R T+ +  A+ TGR S      Q +PR                                
Sbjct: 1309 ARPTI-YTLAADTGRMSCVRPNLQQVPR----------------------------EGGF 1339

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDK 423
            R+CI A  G  L+ AD +G+E RV A ++ +   +   A+   DI+       +      
Sbjct: 1340 RACITADPGHVLISADFSGVELRVAAALSQDQNLMAIVADPDRDIHREIAQLVWG---PD 1396

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTM 451
              K +R   K       Y  G     T 
Sbjct: 1397 AGKPERYQAKRKVFGRLYGSGLNGLITS 1424



 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 601  IVQAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETP 637
             +Q  +R++L + +     T+ G  ++L VHDE+V   P
Sbjct: 1487 CIQGTARELLIDALVRWSGTRWGNAVLLPVHDELVVHVP 1525


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 105/308 (34%), Gaps = 80/308 (25%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 675 CKEGRIHCSLNIN--TETGRLSARTPSLQNQPALEKDRY--------------------- 711

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-- 417
               +R   +A+ G  L+VAD   +E R+LA +      ++AF  G D +  T    +  
Sbjct: 712 ---KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 768

Query: 418 --------------------NTPIDKVSKE----QRAIGKVMELALGYQ----GGAKVFK 449
                               + P   + K+    +R   K++  ++ Y     G ++ + 
Sbjct: 769 VRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWN 828

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYP------------ 490
                    L+ + ++ K  S ++  ++A +         L    Q+P            
Sbjct: 829 VEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQKSH 888

Query: 491 --EFAVKDKLIGTACELVKKAW--RAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVAN 545
               A+   + G+A ++   A     ++  + +L W+ L +    V+ EG + SA     
Sbjct: 889 VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKA 948

Query: 546 VPRLVMRR 553
           +    M +
Sbjct: 949 IVVECMSK 956


>gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
 gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
          Length = 1474

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/528 (15%), Positives = 176/528 (33%), Gaps = 93/528 (17%)

Query: 7    DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLRDET 65
            D+ET S             +   + L  Y+    EPV   D      +P      L    
Sbjct: 907  DLETGSADD-----QHVTDDPGFVRLATYSVGGAEPVATTDIA-GELIP-----LLEQAD 955

Query: 66   VMCVAHNS-LFERILFKKTLGID----IPSKRWICTSVL-ARTNGLPSSLKNA--CLALN 117
             + V HN   ++  + ++  G+D    I + +   T ++    +G   +L+     +A  
Sbjct: 956  TI-VGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVRLASGGNRNLEYNLDAVAHR 1014

Query: 118  FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                   +   ++ +    K       +D    ++ +    + EY  +DV A   ++++L
Sbjct: 1015 CGVDGKLLAGSESALKALAKQY---GGFDKIPVDNPE----YVEYALQDVRANGAVYEKL 1067

Query: 178  IP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            +P             E +       +   G R+D   V       AQ + ++   +V   
Sbjct: 1068 LPATIEAVGEDYLRREHEKMHSLSVVESHGVRVDTAKVDAFIAEEAQTKAEIRAWLVDTV 1127

Query: 229  DGIIR------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS--------HSNITQLA 274
                       S+    A+  YL    G+     ++G + +           H+++ ++ 
Sbjct: 1128 GIPDEGKAPWASAAGKQAIAEYL-ERFGVAAPRTAKGAISTSAKALNDLAEAHADVPEVV 1186

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +  +  ++ +   +     T+ + +  + R+   +    +  TGR S             
Sbjct: 1187 E--LAAKMETLLQSSTPATTIKKYLRGE-RVYPHI--TSSQATGRLSTTNP--------- 1232

Query: 335  RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIA 393
                           G T+           R  I+A +  ++L+  DL+ I+AR +A  +
Sbjct: 1233 ---------------GMTVFGSRDERLIRQREMIVADSADEELISVDLSQIDARCMAAGS 1277

Query: 394  GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            G+      FA G D +     + F          +R+  K +  A  Y  G    K+ A+
Sbjct: 1278 GDAAYAALFAPGRDAHTEMAIRVFG------DAARRSDAKALGHAANYGMG---PKSFAA 1328

Query: 454  HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            H G+   +  + +       ++ Q E+    ++             G 
Sbjct: 1329 HAGISEVEAKEQLDRLHF--EFPQLEAFKDHLRKHAKALGWIATGFGR 1374



 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 603  QAISRDILCEGMKNATKNGYDIV-LTVHDEIVSETPDTPYFSVGT 646
            Q  +RD+  EG+ N      ++V + VHDEIV   P      +  
Sbjct: 1393 QGTARDVFLEGVLNLPAEVLEMVRIFVHDEIVLSVPRERAEDIKQ 1437


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 89/300 (29%), Gaps = 83/300 (27%)

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L     ++ R+  +L     + TGR S      QN P                      
Sbjct: 318 PLQSVADAEQRVHCSLNLN--TETGRLSSRNPNLQNQP---------------------- 353

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              L      +R   +A  G  L+V+D   +E RVLA +      I+AF  G D +  T 
Sbjct: 354 --ALEKDVYFIRKAFMAKPGNILLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFHSRTA 411

Query: 414 AKAFNTPIDKVSKE------------------------QRAIGKVMELALGYQGGAKVFK 449
              ++   + ++K                         +R   K++  +L Y    K   
Sbjct: 412 LSMYDYIKEDIAKGTCLLEWDSSKGEPPAPLLKHKYASERRQAKILNFSLAYG---KTAH 468

Query: 450 TMASHCGLDLQQFSQN----VKSTSTFEDW------------------------EQAESH 481
            +    G+ L++  +      K     + W                            S 
Sbjct: 469 GLQKDFGVSLEEAKEVLAKWYKERPEVKRWQELTIQTAKETGFTRTLMGRYRPLPDINSK 528

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW--RAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           + W +      A+   + G A ++V  A     K + + +L  ++       V   G I 
Sbjct: 529 NKWKEGHACRAAINTPIQGGAADIVMMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIE 588


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 112/365 (30%), Gaps = 83/365 (22%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 GR+   L     + TGR S      QN P  E+                     
Sbjct: 599 NLRGKTGRVHTALNIN--TETGRLSARRPSLQNQPALEKDRYG----------------- 639

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R       G  LVVAD   +E R+LA +AG     +AF  G D +  T    
Sbjct: 640 -------IRKAFTCRPGNILVVADYGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGM 692

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +    + +       GK        + G++ +    ++    ++    + +  +   ++ 
Sbjct: 693 YKEIREAMD-----EGK-----CLLEYGSEGYDEDEANRPALVKDMFASERRKAKVLNFS 742

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            A            +F V  K      E     W +     ++ W+++    A  + +  
Sbjct: 743 IAYGK--TAHGLAKDFGVSTK----EAEDTVNLWYSDRPE-VRAWQEVQHANATKLGKVS 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
           ++  R      R +     RD      + R  + + ++G                     
Sbjct: 796 TLLGR-----HRNLPEASSRDEMRRQHALRASINTPIQGG-------------------- 830

Query: 597 LTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                    + DI    M          + GY++++ +HDE++ E P+        L   
Sbjct: 831 ---------AADIAMLAMMQIHRCPRLKEIGYELLMQIHDEVILEGPEEHKDEALALVKR 881

Query: 651 MTKNP 655
             +NP
Sbjct: 882 HMENP 886



 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 68/259 (26%), Gaps = 60/259 (23%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
              Y        V HN  F+R + +   GI +       T  +AR       L+      
Sbjct: 203 FKPYFESPDAKKVWHNYSFDRHVIENHGGIKLAGFA-ADTMHMARLWNSNRKLEGGYSLE 261

Query: 117 NFSEHLTKMEE--------GKALIAR-------FCKGSIDS----------PPYDCTRAN 151
             +     M E        G+ LI         F K  I            PP D    N
Sbjct: 262 ALTSDPKVMSEAGEMFSEAGEELIRSKRGMKKIFGKPKIKKDGTPGKTIELPPIDQI-QN 320

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRL-----------------IPLSDGERDLW------ 188
             +  + + EY   D +AT  L + L                  P      +LW      
Sbjct: 321 DPEQRETWIEYSALDAQATWFLRESLEAKLRGISCDACPRLSDKPTFHECANLWEFYTTY 380

Query: 189 -----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT-----DGIIRSSRQT 238
                 +   +   G  +D   +   ++    ++K  ++   +            +    
Sbjct: 381 LREFGEVLTDMESAGMFVDKKHLEGAEKQALADKKVAEDYFRRWAMKMCPAAEHMNVGSG 440

Query: 239 YALRMYLFLITGIDLVDMS 257
             +R  LF        D  
Sbjct: 441 IQVRQLLFAGARNKRPDKP 459


>gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta]
          Length = 1172

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 98/331 (29%), Gaps = 78/331 (23%)

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRS 234
            L    + E  +      +   G  ++L  + +L  +I+ E + L+     L        S
Sbjct: 905  LYTFREVEMRIVTTLACMELSGIGVNLKSLQELSAVISDEMQSLETKAYNLAGRKFNFSS 964

Query: 235  SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
            S++   +                                                  +  
Sbjct: 965  SKEVGQM--------------------------------------------------IYP 974

Query: 295  LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
            L +   +D R+RG       + TGR S      QN+P+                      
Sbjct: 975  LLKLAQNDSRIRG--NCITCTVTGRVSMHEPNLQNVPKD-------------------FN 1013

Query: 355  DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     VR   + + G  ++ AD   +E R+L   + +    K      DI+    A
Sbjct: 1014 FADNNLVISVRMAFVPALGNIMLSADYCQLELRLLTHFSQDSVLCKIMKQPGDIFKNIAA 1073

Query: 415  KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            K  N   ++V+ E R   K +   + Y  G    K++A +  +   +  + ++S      
Sbjct: 1074 KWNNVTEEQVNNEMRQRTKQLCYGMIYGMGV---KSLAENLCVSEPEAQEFLES--FMGA 1128

Query: 475  WEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            +         + ++         L+G   +L
Sbjct: 1129 YPGIYKWLNDVLEEAHRDGYVATLLGRRRQL 1159


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 115/333 (34%), Gaps = 63/333 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQ 50
            +  ID ET S         +  AE            A     A+ ++  P +L     +
Sbjct: 346 KRFAIDTETTSLD-------YRIAEMVGFSVAFDANDAYYIPLAHDYEGAPEQL----NR 394

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSS 108
            A+   +   L D +V  + H+  ++  +F+   GI +  + W   ++LA    N + + 
Sbjct: 395 DAIIQQIKPILEDPSVEKIGHHLKYDAHIFENH-GIHL--QGWYFDTMLASYVLNAVTTR 451

Query: 109 LKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                +A  +  HLT   E   GK    + F +  I++  +                Y  
Sbjct: 452 HGMDDVARVYLSHLTTTFEQVAGKGAKQKTFNQIEIETAGH----------------YAA 495

Query: 165 RDVEATRELFK----RLIPLSD-------GERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            D   T  L++    +L  + +        E  +  +  T+ + G  +DL  + +L    
Sbjct: 496 EDAHVTYRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSVDF 555

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
           A   + L+  I+++      +      +   LF   G+     +  T +   S + + ++
Sbjct: 556 ANTIQNLENQIIEIAGESF-NVGSPKQVGEVLFEKLGLKGGKKT-ATGQYSTSEAVLEKI 613

Query: 274 ---AKDLILNRLASSGSAILKLNTLSEAVSSDG 303
                +LI+     +         L +  + D 
Sbjct: 614 DHPITELIIEYRGLTKLRSTYTEALVKQANPDT 646


>gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi]
 gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi]
          Length = 1648

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 117/340 (34%), Gaps = 38/340 (11%)

Query: 173  LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL----- 227
            +   L  + + E     +  T+   G R +   +    +LI  +  ++  D+  L     
Sbjct: 1168 INLELRQMFEFEMSFSKVLSTMEHNGIRFNYHWIKHNTKLIDAKLDEITRDLNSLQILDG 1227

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSG 286
                + ++     L      + G +    ++  L+ +   + + + + K +   R   + 
Sbjct: 1228 KKIDVSNNDHVALLLFDKLKLKGTER-KTNKEILEKLKKLYPDKSYIMKQISEYRYLLN- 1285

Query: 287  SAILKLNTLSEAV--SSDGRLRGTL--QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                 +  +   +    D +       Q    S TGR S      QN+P     ++  +Q
Sbjct: 1286 IKTHHIQNMPNDIKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQNIPNDIDIKDPFSQ 1345

Query: 343  TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                            + +  +RS  I  NG  +V  D   IE R+LA ++ +       
Sbjct: 1346 --------------KSIITLSIRSAFIPRNGYVMVSIDYKNIELRILAHLSQDRTLSDIL 1391

Query: 403  AN-GEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQGGAKVFKT---------M 451
            +N   DI+       +N   ++ V    R++ K +   + Y  G++              
Sbjct: 1392 SNTERDIFEEIARNFWNFRPEEPVPLSHRSLVKQIIYGISYCMGSETLSGKMFNSENEDF 1451

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                G D  + ++  K    FE ++  + +  ++++   E
Sbjct: 1452 MLRPGEDRIEAAERYKQN-FFEKYQGLKQYKDFVENHLVE 1490


>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
 gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
          Length = 2037

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 144/435 (33%), Gaps = 69/435 (15%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
            D E  L L    +   G+          Q+L+ Q  +K+   + KL   I       + L
Sbjct: 1630 DLEMPLQLTLCHMEFVGFP-------AQQQLLQQLYQKMVAVVRKLETKIFEQHGSRFNL 1682

Query: 242  RMYLFLITGIDLVDMSEGTLKSILSHSNITQL---AKDLILNRLASSGSAILKLNTLSEA 298
                 +   + L     G +    S   + +L      +IL     +G     +  L + 
Sbjct: 1683 GSSQAVAKVLGLHRKINGRV--TTSRQVLEKLNTPISHMILGYRKLAGLLAKSIQPLLKC 1740

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
              +D R+ G    Y A  TGR S      QN+ +    E  +     A+N    +     
Sbjct: 1741 CQAD-RIHGQSITYTA--TGRISMAEPNLQNVAK----EFCIQVGSDAVNISCRLP---- 1789

Query: 359  LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                     ++    + L+ AD   +E R+LA ++ +   +K   + +D+++   A    
Sbjct: 1790 --------FMLKDEDRCLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNK 1841

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFED 474
                +VS+  R   K +   + Y  G +      +       L  +QF Q       +  
Sbjct: 1842 IEESEVSQNLRNSTKQVCYGIVYGMGMRSLAESLNCSEEEARLISEQFHQAYTGIREYTM 1901

Query: 475  WEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                 + +                       +++Q    A+   + G+A ++ K A    
Sbjct: 1902 RVVKFARNQGFVETITGRRRYLDNINSDQEHLKNQAERQAINSTIQGSAADIAKSAILKM 1961

Query: 514  HQGVLQLWKDLTEGFACV----------VQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
             + + +    L  G   V          + E  +  ++++A V  + M+     V + +P
Sbjct: 1962 EKNLERYRDKLGLGDKSVDLVMHLHDELIFEVPAAKSKKIAKVLSVTMQ---NCVKLTVP 2018

Query: 564  SSRRLVYSDVKGDCS 578
               +L      G+  
Sbjct: 2019 LQVKLRIGRSWGELQ 2033



 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 58/196 (29%), Gaps = 27/196 (13%)

Query: 466  VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
            +K  ++ +D   A + H    ++              C  +      +   + +      
Sbjct: 1822 LKVMNSSQDLFIAIAAHWNKIEESEVSQNLRNSTKQVCYGIVYGMGMRS--LAESLNCSE 1879

Query: 526  EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL-NTAT 584
            E    + ++             R+V     +   +   + RR    ++  D  +L N A 
Sbjct: 1880 EEARLISEQFHQAYTGIREYTMRVVKFARNQG-FVETITGRRRYLDNINSDQEHLKNQAE 1938

Query: 585  SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------------NGYDIVLTVHDE 631
             Q             + +Q  + DI    +    K                D+V+ +HDE
Sbjct: 1939 RQ----------AINSTIQGSAADIAKSAILKMEKNLERYRDKLGLGDKSVDLVMHLHDE 1988

Query: 632  IVSETPDTPYFSVGTL 647
            ++ E P      +  +
Sbjct: 1989 LIFEVPAAKSKKIAKV 2004


>gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
 gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
          Length = 162

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 42/164 (25%)

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGG 444
           RV+A +A E W+ + F NG DIY T+ ++ F+ P++K  ++   R  GK+ +LALGY G 
Sbjct: 35  RVIAHLARESWRAEVFKNGGDIYCTSASQMFHVPVEKHGINGHLRQKGKIADLALGYGGS 94

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               K M                                         A++  L     +
Sbjct: 95  VGALKAMG----------------------------------------ALEMGLTEDELQ 114

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
            +  AWR  +  ++ LW D        ++   S ++  +     
Sbjct: 115 PLVDAWRQSNPNIVALWWDFDTAIKNAIKMHCSTASHSLNYCSN 158


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
          Length = 745

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 117/412 (28%), Gaps = 142/412 (34%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L +L        R+  +L     + TGR S      QN P                    
Sbjct: 429 LTSLQTLADDQNRVHCSLNIN--TETGRLSSRKPNMQNQP-------------------- 466

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                L      +R   +AS G  L+VAD   +E R+LA +      I AF  G D +  
Sbjct: 467 ----ALEKDKYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEAGGDFHSR 522

Query: 412 TYAKAF--------------------NTPIDKVSKEQ----RAIGKVMELALGYQGGAKV 447
           T    F                      P   + K+Q    R   K +  ++ Y    K 
Sbjct: 523 TALGMFKYIQDAVANGDVLLEWDYSKGEPPKPMLKDQYASERRKAKTLNFSIAYG---KT 579

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              ++   G+ L++                                          E + 
Sbjct: 580 AHGLSQDWGVSLKE-----------------------------------------AEEML 598

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +AW      V + W+  T+  A       ++  R      R +    + +    L  + R
Sbjct: 599 RAWYDSRPEVEK-WQQNTKKAARNYGITRTLMGR-----YRHLPHAMEGNNRKRLGHAER 652

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------G 621
              +                              +Q  + D+    M     +      G
Sbjct: 653 ASINTP----------------------------IQGGAADVAMMAMIKINDSLLLKKLG 684

Query: 622 YDIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKNPSWAKGL-----PLKAEG 667
           + +++ VHDE++ E P +T   +   +   M +   W  GL     PL  +G
Sbjct: 685 WILLMQVHDEVILEGPEETAEEAFEEVVKCMQE--PWVLGLDKTKVPLLVDG 734



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 95/313 (30%), Gaps = 49/313 (15%)

Query: 5   FIDIETRSPQPLPKVG--VWAYA--------EQAVITLCAYAWDDEP-VKLW-DRTEQSA 52
             D E      L +VG     Y         E        Y   D P   LW D  + + 
Sbjct: 35  ACDTEVM-DIDLKEVGPVGHGYVTCISVYSGEDFD-----YGLGDGPGTMLWIDNLDDAK 88

Query: 53  -MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV-LARTNGLPSSLK 110
            +  +   +L D  VM V HN  F+R +        +           L+ T+ +  SL+
Sbjct: 89  DLLQEFKPWLEDAKVMKVWHNYGFDRHVLFNEGINVLGFGGDTMHMARLSDTSRMKYSLE 148

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE----YCKRD 166
           +    L   +    M+E   +     K   D    D      +Q    F E    Y   D
Sbjct: 149 SLTEDL-LKQRKVPMKEIFGVPR-LRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYSAMD 206

Query: 167 VEATRELFKRLIP----------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            ++T  L++ L                       R    L   +  RG  +  D +  ++
Sbjct: 207 AKSTYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADVE 266

Query: 211 ELIAQERKKLDEDIVKLT------DGIIRSSRQTYALRMYLF-LITGIDLVDMSEGTLKS 263
               ++R+   E   +        DG+  +   +  L  +LF         + +E     
Sbjct: 267 VQARKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLFGGAENAKTKEPTEKVRVF 326

Query: 264 ILSHSNITQLAKD 276
             +  +I   A +
Sbjct: 327 KTAREDIPDDAME 339


>gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01]
          Length = 680

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/534 (15%), Positives = 147/534 (27%), Gaps = 103/534 (19%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLART 102
           + D T+       LLQ L D     +AH++  E     + LG+  P   W  C +  AR 
Sbjct: 110 VIDLTKFKE--PKLLQPLLDLPTTYIAHHAKAELHCLWQ-LGLTEPRTIWDTCIAERARY 166

Query: 103 NGLPSSLKN----------ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-- 150
            GL     +             A +   +  +                +    D   +  
Sbjct: 167 LGLHVFDNDRVFDSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHSFI 226

Query: 151 --NHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRG 198
             +  +  +    Y   D     +L+   +           L   E      +  +   G
Sbjct: 227 DYDSGEFTREQIHYAAEDAIVAAKLYLPQMQQLTLQGCYHHLITVEMPWVTTNAAMEWHG 286

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D +   K   ++     KL+    +L    + +       +   F    ++L+D   
Sbjct: 287 VSVDRE---KCNAVLNASTPKLETLRSQLAQMGLDNPNSHQQ-KETFFRQ--LNLLDHFN 340

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL--NTL--SEAVSSDGRLRGTLQFYGA 314
              K       +  LA       L +  S +  +  + L     + SD R+    +    
Sbjct: 341 KGGKYSFKLQLLKDLAHIHPAIGLLAEFSKVQAIERDILLRPTIIGSDSRVHPEHKQLEV 400

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S        LP                                +R  II   G 
Sbjct: 401 V-TGRQSCASPNLLGLP------------------------------GAMRPLIIPKKGN 429

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS--------- 425
            +  AD + IE  + A +  +   I  F  G DIY     + +   +D+           
Sbjct: 430 GIGEADYSQIEVAITAAVYSDKNLIAKFNAG-DIYTVMAQEFYAIDLDEEDRQCDSDTFK 488

Query: 426 ---KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              K++R I K   L + Y     G     +         + +F     +     +    
Sbjct: 489 HKHKDKRDIMKTCVLGILYGLSPFGLGSRLEISELEAKQLMNRFLAMFPTLKHMMETAPQ 548

Query: 479 ESHHLWMQ-----------------DQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           ++ +                          + V     GTA  L K A    +Q
Sbjct: 549 QAAYRGYVSTSTGLHRHRSNNGALSRHETNWMVNMPAQGTAAALFKLAGNRLYQ 602


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1388

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 95/533 (17%), Positives = 171/533 (32%), Gaps = 101/533 (18%)

Query: 7    DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLRDET 65
            D+ET     L    V        + L  Y+ +  EPV   D      +P      L    
Sbjct: 820  DLETGDADDLHVTEV-----PGFVRLATYSVNGAEPVPTTDIA-GELIP-----LLEKAD 868

Query: 66   VMCVAHN-SLFERILFKKTLGID----IPSKRWICTSVLART-----NGLPSSLKNACLA 115
             + V HN   ++    ++  G+D    I + R   T V+AR        L   L      
Sbjct: 869  TI-VGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMARLRAGGDKNLKYDLDKVASR 927

Query: 116  LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                  L    E   KAL  +F  G  D  P D            + EY  +DV A   +
Sbjct: 928  CGVDGKLLADGETALKALAKQF--GGFDKIPVDNPN---------YVEYALQDVRANVAV 976

Query: 174  FKRLI---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            +++L+              E         +  RG R+D   V +      Q + ++   +
Sbjct: 977  YEKLLTSVGKEINQDYLRLEHAKMHALAVVEARGIRVDTSKVDQFLAEEEQTKGEIRTWL 1036

Query: 225  VKLTDGIIRSSRQT------YALRMYLFLITGIDLVDMSEGTLKSILS--------HSNI 270
            +                     +  YL     +     S+G++ +           H ++
Sbjct: 1037 IDTVGIPDEGKSPWASAAGKQVIADYLSQFN-VAAPRTSKGSISTSTKALNELAEKHPDV 1095

Query: 271  TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             ++ +  +  ++ +   A    +T++  +  D R+  +++   A  TGR S         
Sbjct: 1096 PEVVE--LAAKMETLLHASTPASTINRYLRGD-RVYPSIKSIQA--TGRLSTTKP----- 1145

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVL 389
                               G T+    G      R  I+  +  + LV  DL+ I+AR +
Sbjct: 1146 -------------------GMTVFGSRGEWLIRQREMILPDSTDEALVSVDLSQIDARCM 1186

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
            A  +G+    + F  G D +     + F          +R+  K +  A  Y  G K F 
Sbjct: 1187 AAGSGDANYAQLFTPGRDAHTEMALRVFG------DASRRSDAKALAHAANYGMGQKSFA 1240

Query: 450  TMAS----HCGLDLQQFSQNVKSTSTFED-WEQAESHHLWMQDQYPEFAVKDK 497
              A          L++      +   F+D   +  + H W+   +      D+
Sbjct: 1241 QHAGISEVEATKQLERLHYEFPALEKFKDHLRKHAAAHGWIPTGFGRRVTVDR 1293



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 603  QAISRDILCEGMKNATKNGYDIV-LTVHDEIVSETPDTPYFSVGTLCSLMTK 653
            Q  +RD+  EG+ N      ++V + VHDEIV   P      +    ++M  
Sbjct: 1306 QGTARDVFLEGVLNLPAEVLEMVRIFVHDEIVLSVPRDRAEEIKH--TVMGA 1355


>gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 236

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 20/188 (10%)

Query: 157 QLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDL 205
           +  G Y   D + T +L  ++ P             + E  L  +   +   G +ID  +
Sbjct: 51  EEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAV 110

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           + K  E I     +L++    +       S  T  L+  LF   GI  +  + G   S  
Sbjct: 111 LHKHSEEITLRLAELEKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST- 168

Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGR 319
           S   + +LA D  L ++      + KL     + L   ++   GR+  +      + TGR
Sbjct: 169 SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGR 227

Query: 320 WSGCVFQP 327
            S    +P
Sbjct: 228 LSSTDTEP 235


>gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2]
 gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2]
          Length = 1415

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 171/529 (32%), Gaps = 98/529 (18%)

Query: 6    IDIETRSPQPLPKVGVWA-YAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            +D+ T     L        Y E   A + + A A DD PV   +    S +  D+   +R
Sbjct: 822  VDVATF---DLETGDAERLYVEDGQAYVRIGAVAHDDRPV--IELG-GSTVAEDVAARIR 875

Query: 63   DETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVL-------ARTNGLPSS------ 108
                +   HN + F+     +   + +     +            AR    P +      
Sbjct: 876  QGATI-TGHNIMAFDLPALVRAEAMTMDEIHDLADEGRLFDGLLAARLLDPPMARDKGVD 934

Query: 109  ------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFG 160
                  L    ++    E  T +   K L  ++  G     P D    +    +  +LF 
Sbjct: 935  ATRKYDLGTLAVSYGLGEKYTDL--SKPLAKKYG-GDWGQIPVDTDDPDPERAEDARLFR 991

Query: 161  EYCKRDVEATRELFKRL--------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             Y  +D E +R L  RL              E  +  L   I   G+ +D  L+ +    
Sbjct: 992  TYMVQDAELSRRLHARLLEELGGTVPEYLTREHRVAALAAQIRHNGFLVDQPLLTERVAE 1051

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD------------MSEGT 260
            + Q + +    + +     + +++   A +  L    G + ++             +  +
Sbjct: 1052 VDQRKAESLAWLAEHAGVPLANAK-GVAYKSPLASTGGKEALEAALRAAGATSFWRTPNS 1110

Query: 261  LKSILSHSNITQLAKDLI-LNRLASSGSAILK-------LNTLSEAVSSDGRLRGTLQFY 312
             +   S  ++  LA++   L ++      + +         TL + +S DGR+   + F 
Sbjct: 1111 GQFDTSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSVYQTLMDNMSPDGRVHPKIGFD 1170

Query: 313  GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             A  TGRWS        L ++                               R+ ++   
Sbjct: 1171 QA--TGRWSVTRPGLTVLGKRGGRHVE-------------------------RAVLLPDP 1203

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
            G+ L+ ADL+ ++ R +A ++ +   I+      D +     + F       + ++R   
Sbjct: 1204 GEVLMSADLSQVDMRAVAGLSQDLAYIEMLKKD-DPHAEIAKELFG------TADRREEA 1256

Query: 433  KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            K +     Y  G K            +++F  +++         Q E  
Sbjct: 1257 KAIGHGWNYGRGIKAISEGQEIEPALVRRFDASMRERFGRLVEWQTEVR 1305



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 95/295 (32%), Gaps = 30/295 (10%)

Query: 389  LAWIAGEDWKIKAFAN-GEDIYVTTYAK-AFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
            +  +A E   +       + ++    A+  + T +D +S + R   K+     G+     
Sbjct: 1120 MKHLAREYHHLPKVREIAKHVFRIVGARSVYQTLMDNMSPDGRVHPKI-----GFDQATG 1174

Query: 447  VFKT-------MASHCGLDLQQF------SQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
             +         +    G  +++        + + S    +   +A +             
Sbjct: 1175 RWSVTRPGLTVLGKRGGRHVERAVLLPDPGEVLMSADLSQVDMRAVAGLSQDLAYIEMLK 1234

Query: 494  VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
              D     A EL   A R +    +    +   G    + EG  I    V      +  R
Sbjct: 1235 KDDPHAEIAKELFGTADRREEAKAIGHGWNYGRGIK-AISEGQEIEPALVRRFDASMRER 1293

Query: 554  HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
              R +       R +  +    D  +     +   R  T G  L     Q  +RDI+  G
Sbjct: 1294 FGR-LVEWQTEVRAVAEAGQLLDNGFGRLMRADPQRAHTQGPALMG---QGAARDIMMTG 1349

Query: 614  MKNATKNGYDIV-LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAE 666
            +    +    ++   +HDEIV   P      VG  +   ++    W +G+P+ A+
Sbjct: 1350 LLRLDRRILPMLRAQIHDEIVFSVPVAEAEEVGRAVVEALSF--EW-RGVPILAD 1401


>gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
 gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis]
          Length = 2154

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/516 (13%), Positives = 153/516 (29%), Gaps = 82/516 (15%)

Query: 65   TVMCVAHNSLFERILFKKTLGIDIPSKRWICT-------SVLARTNGLPSSLKNACLALN 117
             V+    N   +  + K  +           +        + +    LP       + + 
Sbjct: 1562 EVIKFTWNLKIQIQVLKNAVVSIHRFGSTNLSGKDLDLELIDSSHLPLPQINVTEGIDMC 1621

Query: 118  FSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEY-----CKRDVEATR 171
                +   +E ++      K      P      AN    W+          C R V  TR
Sbjct: 1622 IVAWILWPDEERSSNPNLEKEVKRRLPTQAVAAANRNGRWKNQMRRAAHNGCCRRVAQTR 1681

Query: 172  ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L   L  L             E  L  +   +   G  +D++  L+ + ++ ++ + L+
Sbjct: 1682 ALCSVLWKLLISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRHLE 1741

Query: 222  EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEGTLKSILSHSNITQLAKDLILN 280
            +   +L             +   L+    + +     +G L        +        L 
Sbjct: 1742 KKAYELAGMTFSLYT-AADIANVLYGRLKLPIPEGHGKGKLHPSTDKHCLD-------LL 1793

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            R      A +   T++            + F+       W         +    R+   +
Sbjct: 1794 RKKYCCFAFMFYATIAALKLG-----LLMLFFLILMILIWVSE------IKVLLRTNLGV 1842

Query: 341  TQTIQALNRGETIADPLGLASDC------VRSCIIA-SNGKKLVVADLAGIEARVLAWIA 393
             Q ++ +   +   D  G  ++        R   I       L+ AD + IE R++A  +
Sbjct: 1843 MQCVEHMVEFKISMDKNGGDAEANNYKINAREFFIPTQENWLLLTADYSQIELRLMAHFS 1902

Query: 394  GEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
             +   I+  +    D++    A+      + V+  +R   K +   + Y  GA    T+A
Sbjct: 1903 KDASLIELLSKPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGILYGMGA---NTLA 1959

Query: 453  SHCGLDLQQFSQNVKSTST--------FEDWEQAESHHLWM------------------- 485
                    + ++ +KS  +          +   +   + ++                   
Sbjct: 1960 QQLECSSDEAAEKIKSFKSCFPGVASWLHEAVASCRKNGYVETLKGRKRFLSKIKFGNSK 2019

Query: 486  -QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             + +    AV     G+A +L+K A    +  + ++
Sbjct: 2020 EKSKAQRQAVNSICQGSAADLIKIAMINIYSVIARV 2055



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 37/175 (21%)

Query: 494  VKDKLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
            +  +  G A E V    R + + ++  +   +         E  S  A       +    
Sbjct: 1922 IAARWTGKAEESVASLERDQTKRLVYGILYGMGANTLAQQLECSSDEAAEKIKSFKSCFP 1981

Query: 553  RHKRDVHIVLPSSRRLVYS-------DVKGDCSYLNTATS-QLMRERTYGGKLTENIVQA 604
                 +H  + S R+  Y               + N+    +  R+         +I Q 
Sbjct: 1982 GVASWLHEAVASCRKNGYVETLKGRKRFLSKIKFGNSKEKSKAQRQA------VNSICQG 2035

Query: 605  ISRDILCEGMKNAT----------------------KNGYDIVLTVHDEIVSETP 637
             + D++   M N                        K    I+L VHDE+V E  
Sbjct: 2036 SAADLIKIAMINIYSVIARVDGPDPSSSLATKFHMLKGRCRILLQVHDELVLEVD 2090


>gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 311

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 102/305 (33%), Gaps = 66/305 (21%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 18  ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLIM-SNNQLRE 76

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            LF    +                         L+  R +   + + K  + SEAV+  G
Sbjct: 77  ILFGKLKL------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 112

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
             +  +Q                    P+  + +E    TI                   
Sbjct: 113 ISKHPIQITT-----------------PKNFKGKEDKILTISP----------------- 138

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTPI 421
            R+  ++S G   + AD + IE R+LA ++G+   +K F   E  D++ T  ++  + P+
Sbjct: 139 -RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPV 197

Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           ++V+   R   K +  A+ Y  G    A             L+ F Q  K    F     
Sbjct: 198 EQVTHADREQTKKVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAI 257

Query: 478 AESHH 482
           A+ H 
Sbjct: 258 AQCHQ 262


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 97/316 (30%), Gaps = 79/316 (25%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGR+  +L     + TGR S      QN P  E+                         
Sbjct: 504 SDGRVHCSLNIN--TETGRLSARRPSLQNQPALEKDRY---------------------- 539

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   +A+ GK LVVAD   +E R+LA +A       AF  G D +  T    +   
Sbjct: 540 --KIRQAFVAAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMYPHV 597

Query: 421 IDKVSKEQ-----------------------RAIGKVMELALGYQ----GGAKVFKTMAS 453
            + V K++                       R   K++  ++ Y     G AK +     
Sbjct: 598 REAVEKDRVLLEWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGKTAMGLAKDWNVKLD 657

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEF 492
                +  +  +      ++   + E+H                                
Sbjct: 658 EAKATVDLWYSDRPEVLAWQKERKQEAHETLRVHTLLGRARHLPDINSSNSLLRSHMERA 717

Query: 493 AVKDKL-IGTACELVKKAWRAKHQGVLQL---WKDLTEGFACVVQEGGSISARRVAN-VP 547
           A+   +  G+A ++   A    +Q        WK L +    V+ EG   SA      V 
Sbjct: 718 AINTPVQQGSAADVAMCAMLEINQNARLRELGWKLLLQVHDEVILEGPLESAEEAKELVI 777

Query: 548 RLVMRRHKRDVHIVLP 563
           + +M     +  + + 
Sbjct: 778 KSMMYPFNGENILDVE 793



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 78/269 (28%), Gaps = 63/269 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
             Y  +   V + D      +     +Y  D ++  V HN  F++ +  +     I  + 
Sbjct: 75  FGYGKNRLWVDVLD--GGDDVLRVFKRYFEDPSIQKVWHNYSFDKHILSRH---GIHPQG 129

Query: 93  -WICTSVLARTNGLPSSLKNACLALNFSEHLTKM----------EEGKALIAR------F 135
            +  T  LAR N           AL       K+          E+G   + +      F
Sbjct: 130 FYADTMHLARLNDSARRGSKGGYALEVLSADRKVMDYCSKNFTEEDGSVFVGKKSMKELF 189

Query: 136 CKGSIDS----------PPYDCTRANHV--QAWQLFGEYCKRDVEATRELFKRL------ 177
            K  +            PP D  + +     AW  +      D   T  LF  L      
Sbjct: 190 GKAKLKKDGTPGKIKVVPPVDELQRDEELRDAWIHYSTL---DAVCTWRLFVSLQHKLSN 246

Query: 178 IPLSDGE---------------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            P S  E               R    +   +   G  +D D +  +++L   ++K    
Sbjct: 247 TPWSVAELRHKGSMYDFYEKYWRPFGEVLVQMEAYGMLVDYDHLATVEKLARAQQKISVS 306

Query: 223 DIVKLTDGIIRSS-----RQTYALRMYLF 246
              K       ++          +R +LF
Sbjct: 307 RFRKWAARYCPNAARMNVGSDAQIRQFLF 335


>gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A]
          Length = 710

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 111/771 (14%), Positives = 227/771 (29%), Gaps = 201/771 (26%)

Query: 4   LFIDIETRSPQ-PLPKVGVWAYAEQAVITLCAY---AWDDEPVKLWDRTEQSAMPSDLLQ 59
           L  D ET      + K+    +       +  +     D EPV L  R E +  P+ + +
Sbjct: 17  LSFDCETTIRNHDIGKLQASPF--HPANKMVCFGCKTLDAEPVVL--RPEHADFPTIIRE 72

Query: 60  YLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL--- 114
              +  ++ V  N  F+ +   +T     D+     I  + LA         K A L   
Sbjct: 73  ---NGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTGQDHKMASLNEL 129

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-- 172
           A+ +   L      +   A      I  P         ++ +Q +       V   +   
Sbjct: 130 AMKYGGTLKDDRIAEFWKAGVDTSDIPFPM--------LEEYQKYDVINTEIVFLEQVDQ 181

Query: 173 -LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG- 230
            + + L+ L+  + D  +    +   G + D DL L+L + +  E + +   +  + +  
Sbjct: 182 IIKEGLLNLTMTQMDALMATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSSVMEAV 241

Query: 231 -------IIRSSRQTYAL----------RMYLFLITGI---------------------- 251
                   + S+ Q  AL          + Y++   G                       
Sbjct: 242 GFPKDSINVGSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKIFERSK 301

Query: 252 -------DLVDMSE------------GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                   +    +                     + + QL  D++  R           
Sbjct: 302 RIEGLCKPISPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQ-LEKDVNTYY 360

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
              +  V  DG L G    +  + TGR S      QN+      +               
Sbjct: 361 IGYASQVFPDGCLHGNYN-HTKTGTGRLSSSSPNLQNIS-NSGKDLQRKNN--------- 409

Query: 353 IADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      ++ CII+     K++  D + +E    A + G+    K    G D +  
Sbjct: 410 -KTTQRFHMSDIKRCIISRFPNGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVDTHCM 468

Query: 412 TYAKAFNT-PIDKV-----------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           + + A      +++           +K  R   K +  AL Y  GA+     A + G+++
Sbjct: 469 SASWANPKYSYEEILAGYKAEDPFFTK-LRKNAKPVNFALQYGAGAETA---AENAGIEV 524

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           +Q    +   + ++ +                                            
Sbjct: 525 EQAQAIID--NYYKRYC------------------------------------------- 539

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
           + K   +     V +    S+RR                 + +P+ R   Y +  G    
Sbjct: 540 VLKQFQDDVIEQVNKSRQPSSRRTE---------------MGMPAGRG-EYRNPTGRIFT 583

Query: 580 LNTAT-----SQLMRERTYGGKLTENI-VQAIS-RDILCEGMKNATK---------NGYD 623
                      +  +  ++     +N   Q+ +  DI+   + +  K         +   
Sbjct: 584 FYEYDAPEFLRRRGQMTSFSPTQCKNYPTQSFATGDIVPMMLGHIYKLLMTDKTLRDKCL 643

Query: 624 IVLTVHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAK-------GLPLKAE 666
           ++ TVHD +V +  PD   ++   +  LM + P + +        +PL  +
Sbjct: 644 LIGTVHDSVVFDVHPDILDYAAKAVRGLMLRTPEYVERYLKVPFDMPLACD 694


>gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 276

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 35/245 (14%)

Query: 174 FKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++L  + +  ++ L  +   +   G  +++  + +L +   Q    L+++I  L     
Sbjct: 54  QEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERF 113

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSG 286
             +     L   LF   G++    S+ +     ++  +  L ++       ILN    S 
Sbjct: 114 NIA-SPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSK 172

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L + V   DGR+  +      +  GR S      QN+P +            
Sbjct: 173 LKGTYTDALIKQVDPLDGRIHTSFSTTATAT-GRLSSSNPNLQNIPIRS----------- 220

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG-EDWKIKAFAN 404
                           + +R   IA  G K++ AD + IE + L           K FA 
Sbjct: 221 -------------EEGNLIRQAFIAPKGHKIISADYSQIELKPLGTRCQRCHHLKKLFAT 267

Query: 405 GEDIY 409
            ++I+
Sbjct: 268 KQEIH 272


>gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris
           gallopavo]
          Length = 1077

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 87/253 (34%), Gaps = 39/253 (15%)

Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           + KL T+   ++ D  G +  T    G + TGR S      Q + +         Q I+ 
Sbjct: 756 LQKLYTIMMGLAHDLQGFICPTWNQTG-TVTGRLSSKHPNIQGISK-HPVRIKKKQYIKG 813

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                    P        R+  ++  G   + AD + IE R+LA ++ E   +K F   E
Sbjct: 814 KEEEIVTISP--------RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQEPE 865

Query: 407 --DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460
             DI+ +  ++    P ++V +  R   K +  ++ Y  G    A+            ++
Sbjct: 866 TADIFTSLASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAECLGITPLEASCFIE 925

Query: 461 QFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLI 499
            F Q  K    F      +                     S    ++ Q    AV   + 
Sbjct: 926 SFMQKYKKVHEFTKKTIGQCQNKGYVVSIMGRKRLLANIHSQDYKLRTQAERQAVNFVVQ 985

Query: 500 GTACELVKKAWRA 512
           G+A +L K A   
Sbjct: 986 GSAADLCKMAMVE 998


>gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1]
          Length = 786

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/514 (14%), Positives = 154/514 (29%), Gaps = 99/514 (19%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           Y+ +D+P       E   +   +   L  E V+    N  ++    K    I+  + + +
Sbjct: 190 YSTEDQP------KEGDLLHDQIKWLLNSEMVIMCGANFKYDLNWIKYKWNIECTNFK-L 242

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T+++        S      A  F++     ++   L   + KG +D  P +        
Sbjct: 243 DTTLVGSLLNENRSNSLNTHAKLFTDLGGYDDD---LNNIYDKGRMDLIPDENLL----- 294

Query: 155 AWQLFGEYCKRDVEATRELFKRLI------PLSDG-----ERDLWLLDQTINDRGYRIDL 203
                  Y   D +AT  +           P                 + +   G +++ 
Sbjct: 295 ------PYAGGDTDATLRVRNHFARELQQDPWLTNFYVNLLHPASRAFEKMEQNGVKVNG 348

Query: 204 DLVLKLQELIAQERKKLDEDIVKL----TDGIIRSSRQTYAL---RMYLFLITGIDLV-- 254
           + +  L E + QE+ +   ++V +        +  ++        + YLF   G+ L   
Sbjct: 349 EKLKTLGEELEQEKNQYLREMVDMMPATACPEVPEAKPVIKAAIGKDYLFGARGLGLKPI 408

Query: 255 ---DMSEGTLKSILSHSNITQLAKDLILNRL--------ASSGSAILKLNTLSEAVSSDG 303
              + ++  L +    +N     K    ++          +  +              DG
Sbjct: 409 MVNEKNKEPLTNKSHLNNFDDPKKYPEAHKFIQLGNKWNQADKAQGTYCTGFLRHQREDG 468

Query: 304 RLRGTLQ-FYGA-----------SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
               +   F GA           + TGR +      Q LP++                  
Sbjct: 469 YFHPSYMLFKGAFDNDKGTDDSGTVTGRLAAKDPAIQTLPKKT----------------- 511

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                    +  +R+C     G  +V  D +  E R L  +A E    KA+  G D++V 
Sbjct: 512 -------SLAKRLRACYEPPEGYSIVEIDFSQGELRRLCGMANEPAMKKAYREGLDLHVI 564

Query: 412 TYAKAFNTPIDKV----------SKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQ 460
           +         +++           K+ R  GK     L Y      F+  A    G+ L 
Sbjct: 565 SGGATAGLSYEQMQELEKTDAALYKKYRNYGKPQNFGLLYGMSWGGFQQYAKDQYGVLLS 624

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                    + F+ + +    H   ++       
Sbjct: 625 DKEAQNMRFNFFDTYARLPDWHEETKEFARVNGY 658


>gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens]
          Length = 312

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 65/287 (22%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 19  ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERF-LITSNNQLRE 77

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            LF    +                         L+  R +   + + K  + SEAV+  G
Sbjct: 78  ILFGKLKL------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 113

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
             +  +Q                    P+  + +E    TI                   
Sbjct: 114 ISKHPIQITT-----------------PKNFKGKEDKILTISP----------------- 139

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTPI 421
            R+  ++S G   + AD + IE R+L  ++G+   +K F   E  D++ T  ++  + P+
Sbjct: 140 -RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPV 198

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           ++V+   R   K +  A+ Y  G +    +A+  G+ +Q+ +Q ++S
Sbjct: 199 EQVTHADREQTKKVVYAVVYGAGKER---LAACLGVPIQEAAQFLES 242


>gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
 gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
          Length = 519

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 111/397 (27%), Gaps = 78/397 (19%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLD----EDIVKLTDGIIRSSRQTYALRMYLFL-I 248
           +   G   D   +    E I +  K+++     +  KL      +      +  +    +
Sbjct: 1   MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWFGKNL 60

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-LSEAVSSDGRLRG 307
               +   ++ TL             K +      S+   + KLN+   + +    R   
Sbjct: 61  ENYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRTNN 120

Query: 308 T-LQF-----YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG----------- 350
              QF        + TGR S      Q+LPR       L       +             
Sbjct: 121 LKFQFSCLWNQTGTTTGRLSSTKPNFQSLPRNSTKLTKLNNIDFDDDDNFNNINNNNNNN 180

Query: 351 --------------------------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
                                     E  +         +R+  I+  G  LV  D   I
Sbjct: 181 NGEKNLYTLLNNDNDGDDDEDDDNIDELNSYNNNNNIINIRNSFISREGYSLVALDYNQI 240

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-NTPIDKVSKEQRAIGKVMELALGYQG 443
           E R++A  + +   I+ F +G+D+     ++       + V KE R   K +   + Y  
Sbjct: 241 ELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVKKEIRDKVKRIVYGILYGI 300

Query: 444 GAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAE--SHHLWMQDQYPEF----- 492
                  +           +  F+   +  S+F            L + ++   F     
Sbjct: 301 QKNSLHKLLGVSLDEAQEHINNFNLKFEEVSSFIKINSQIKNGKILTIGNRIRRFQDHSS 360

Query: 493 -----------------AVKDKLIGTACELVKKAWRA 512
                            A+   + G++ +++K A   
Sbjct: 361 IIPSTSSSSSLSSSPIQAINSIMQGSSADIIKMAMIN 397


>gi|33322741|gb|AAQ07105.1|AF496417_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 101

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 361 SDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +R   + S     +   D + IE RVLA ++ +    +AF  G DI+  T  K F+ 
Sbjct: 11  GKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHL 70

Query: 420 -PIDKVSKEQRAIGKVMELALGYQ 442
             +D+V+  Q    K +   + Y 
Sbjct: 71  SSVDEVTSLQXRRAKAVNFGIVYG 94


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 87/268 (32%), Gaps = 77/268 (28%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 303 CKEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY--------------------- 339

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-- 417
               +R   +A+ G  L+VAD   +E R+LA +      ++AF  G D +  T    +  
Sbjct: 340 ---KIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 396

Query: 418 --------------------NTPIDKVSKE----QRAIGKVMELALGYQ----GGAKVFK 449
                               + P   + K+    +R   K++  ++ Y     G +  +K
Sbjct: 397 VRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWK 456

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYP------------ 490
                    L+ + ++ K  S ++  ++A +         L    Q+P            
Sbjct: 457 VSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGH 516

Query: 491 --EFAVKDKLIGTACELVKKAWRAKHQG 516
               A+   + G+A ++   A     + 
Sbjct: 517 VERAAINAPVQGSAADVAMCAMLEIERN 544


>gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans]
          Length = 1540

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 114/357 (31%), Gaps = 67/357 (18%)

Query: 194  INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYA-----LRMYLF 246
            I   G   D  L       I ++ + L+E+I +L  G     SS +        L +   
Sbjct: 1163 IFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYP 1222

Query: 247  LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              +G         T K IL   N        IL       +    L  L++ +   GR+ 
Sbjct: 1223 ETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCLMPLAKFI---GRIH 1279

Query: 307  GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
               +    + TGR    V   QN+P++  S+ +                         R 
Sbjct: 1280 CWFEMC--TSTGRILTSVPNLQNVPKRISSDGMSA-----------------------RQ 1314

Query: 367  CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
              IA++   L+ AD   +E RVLA ++ +   +    +  D++    +  +N P D V  
Sbjct: 1315 LFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEEL-SIQWNFPRDAV-- 1371

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAE--- 479
                  K +   L Y  GAK    +           L+ F        ++ +  + +   
Sbjct: 1372 ------KQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCK 1425

Query: 480  ----------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                            S     + +    AV   + G+A E+ K A       + + 
Sbjct: 1426 EEPISTIIGRRTIIKASGIGEERARIERVAVNYTIQGSASEIFKTAIVDIESKIKEF 1482



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 598  TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
                +Q  + +I    + +        G  IVLT+HDE++ E P+    +    + + M
Sbjct: 1456 VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESIENCM 1514


>gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1)
            [Caenorhabditis elegans]
          Length = 1661

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 114/357 (31%), Gaps = 67/357 (18%)

Query: 194  INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYA-----LRMYLF 246
            I   G   D  L       I ++ + L+E+I +L  G     SS +        L +   
Sbjct: 1284 IFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYP 1343

Query: 247  LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              +G         T K IL   N        IL       +    L  L++ +   GR+ 
Sbjct: 1344 ETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCLMPLAKFI---GRIH 1400

Query: 307  GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
               +    + TGR    V   QN+P++  S+ +                         R 
Sbjct: 1401 CWFEMC--TSTGRILTSVPNLQNVPKRISSDGMSA-----------------------RQ 1435

Query: 367  CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
              IA++   L+ AD   +E RVLA ++ +   +    +  D++    +  +N P D V  
Sbjct: 1436 LFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEEL-SIQWNFPRDAV-- 1492

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAE--- 479
                  K +   L Y  GAK    +           L+ F        ++ +  + +   
Sbjct: 1493 ------KQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCK 1546

Query: 480  ----------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                            S     + +    AV   + G+A E+ K A       + + 
Sbjct: 1547 EEPISTIIGRRTIIKASGIGEERARIERVAVNYTIQGSASEIFKTAIVDIESKIKEF 1603



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 598  TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
                +Q  + +I    + +        G  IVLT+HDE++ E P+    +    + + M
Sbjct: 1577 VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESIENCM 1635


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 88/272 (32%), Gaps = 40/272 (14%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           +L   L    V  +  N  ++  +F    G+ +    +  T + + T           LA
Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDELA 491

Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +  H T   E   GK      F K +ID                   +Y   D + T 
Sbjct: 492 DRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVTM 535

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P            ++ E  L  +   I   G  ID + +L     I Q   +L
Sbjct: 536 KLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSEL 595

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++ +      I   +  T  L+  LF   G+ ++  +     S           +  ++ 
Sbjct: 596 EQLVHSEAGEIFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVP 654

Query: 281 RLASSGSAILKL-----NTLSEAVS-SDGRLR 306
           +L      + KL     + L   ++   GR+ 
Sbjct: 655 KLLMEHRGLSKLKSTYTDKLPLMINQKTGRVH 686


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 78/276 (28%), Gaps = 66/276 (23%)

Query: 282 LASSGSAILKLNTL--------SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L      I K  TL         + ++    R+      +  + TGR +      QN+PR
Sbjct: 511 LIEQMMKIQKYTTLISSHIVGRQKYLNPFTDRIHAGYSSF--TDTGRLNSFKPNGQNVPR 568

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            +  +                          +RS      GK L   D +G E R++AW 
Sbjct: 569 PDNDD------------------------FKIRSFFAPKPGKILFFIDFSGFELRLIAWK 604

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG--------- 443
           + ++  I+ F    D++  T +     P   ++K +R   K     + Y G         
Sbjct: 605 SNDEVMIELFNTNGDMHRRTASALTGKPESDITKIERTNAKAGNFGIAYGGTEYALQKTF 664

Query: 444 -----------GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESH 481
                                     + Q  +     +    +                 
Sbjct: 665 KTDYGVRKTLDECAAIVNAVKTAYPRIPQMQRQAILDARENGYAETIYGYKRLLRDINGT 724

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           +  ++      A    + G+A +++K      +  +
Sbjct: 725 NSKLRGSDERRAGNTPIQGSAADIMKDCQNKVYDRI 760


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 107/360 (29%), Gaps = 85/360 (23%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           +GR+   L     + TGR S      QN P  E+                          
Sbjct: 665 NGRVHAALNIN--TETGRLSARRPSLQNQPALEKDRYG---------------------- 700

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R    A  G  L+VAD   +E R+LA +AG     +AF  G D +  T    +    
Sbjct: 701 --IRKAFSAEPGNILIVADYGQLELRLLAHMAGCVSMREAFEAGGDFHSRTAMGMY---- 754

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
               KE R   +  +  L Y     +           ++    + +  +   ++  A   
Sbjct: 755 ----KEIREAMEQGKCLLEYG---DIDDDAGGEKPALVKDMFASERRKAKVLNFSIAYGK 807

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                    +F V  +      +L    W +    V + W+ +    A    +  ++  R
Sbjct: 808 --TAHGLAKDFGVSTREAEETVDL----WYSDRPEVRE-WQAVQHKKAAEKGKVNTLLGR 860

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                 R +      D  +    + R   +                              
Sbjct: 861 -----HRNLPEASSSDE-MRRGHALRASINTP---------------------------- 886

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
           +Q  + DI    M          + G+ +++ +HDE++ E P+        L  L M K 
Sbjct: 887 IQGGAADIAMLAMIQIHRCPRLRELGFKLLMQIHDEVILEGPEEHRDEALALVKLHMEKP 946



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 72/274 (26%), Gaps = 63/274 (22%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS--VLARTNGLPS--SLKNA 112
              Y     V  V HN  F+R + +                  +      L    SL+  
Sbjct: 265 FKPYFESPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHMARLWNSNRKLEGGYSLEAL 324

Query: 113 CLALNFSEHLTKM--EEGKALIAR-------FCKGSIDS----------PPYDC--TRAN 151
                      +M  E G+ LI         F K  +            PP D   T   
Sbjct: 325 SSDPKVMSDAGEMYSEAGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPIDEIQTDPE 384

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLI-----------PLS---------DGERDLW--- 188
             + W    EY   D +AT  L + L            P+              D +   
Sbjct: 385 QRETW---IEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDFYVHY 441

Query: 189 -----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQT 238
                 +   +   G  +D   +   ++   +++K  ++       G        +    
Sbjct: 442 LREFGEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMNVGSG 501

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             +R  LF   G       +  ++     + +++
Sbjct: 502 IQVRQLLFA--GAPNKRRDKPGVEKTREFAMVSK 533


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 113/366 (30%), Gaps = 85/366 (23%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +    +GR+ G L     + TGR S      QN P  E+                     
Sbjct: 511 DIRGPEGRVHGALNIN--TETGRLSARRPSLQNQPALEKDRYG----------------- 551

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R    A  G  LVVAD   +E R+LA +A      +AF  G D +  T    
Sbjct: 552 -------IRKAFTAGPGNILVVADYGQLELRLLAHMADCKSMQEAFEAGGDFHSRTALGM 604

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           ++   + + K         E+ L Y                  +Q     +        +
Sbjct: 605 YSNIKEAIDKG--------EVVLEYG-----------------EQEETVDEKDRPALVKD 639

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              S     +      A      G A +       A +   ++LW          V+E  
Sbjct: 640 VFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAAN--TVELWY----ADRPEVREWQ 693

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +  +         M   K  V  +L   R L              A+S+    +++  +
Sbjct: 694 EVQKK---------MAVEKNLVRTLLGRVRNLP------------DASSKNEAFKSHALR 732

Query: 597 LTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
            + N  +Q  + DI    M          + GY +++ +HDE++ E P+        L  
Sbjct: 733 ASINTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTK 792

Query: 650 LMTKNP 655
              +NP
Sbjct: 793 YHMENP 798



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/376 (13%), Positives = 105/376 (27%), Gaps = 67/376 (17%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI---PSKRWICTSVLARTNGLP 106
              +     +Y  +  V  V HN  F+R + +   GI +    +       +      L 
Sbjct: 109 GDGVWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNRKLD 168

Query: 107 SS------------LKNACLALNFSEHLTKMEEGKALIARFCKG--SIDSPPYDCTRANH 152
                         +      L     + + + G  +   F K     D  P        
Sbjct: 169 GGYSLEALSSSADAMSECAEMLGAGAEMMRAKRG--MKKIFGKPKLKKDGTPGKTMILPP 226

Query: 153 VQAWQLFG-------EYCKRDVEATRELFKRLI-----------PLSDG---------ER 185
           ++  Q          EY   D +AT  L + L            P+              
Sbjct: 227 IEEIQEARDSRDRWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLW 286

Query: 186 DLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDE-----DIVKLTDGII 232
           D +         L   +   G  +D   +   +++  ++++  ++        K     I
Sbjct: 287 DFYTFYLAEFGNLLTQMERNGLLVDKAHLAHAEKMAHEDKRVAEDYFRNWAASKCEGARI 346

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      +R  LF   G       +  ++  L+     + ++ +  +     G A  K 
Sbjct: 347 MNVGSGLQVRQLLFA--GAKNKRRDKPGVE--LTREFTQESSEWIAWDAAGREGKAPKK- 401

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T+  A+   G     +Q    + TG  +      + L  +  +   +  T  +L   E 
Sbjct: 402 -TMKVALH--GITVKPIQVQTFTATGLPAVSSVVLRALAGKPGAARAIMDTWDSLADAEK 458

Query: 353 IADPLGLASDCVRSCI 368
             D L  A        
Sbjct: 459 TEDVLKKACGTAFEAF 474


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 35/192 (18%)

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442
           E R++A ++G++  I+AF +G D +    +  +  P+++++ +QR+  K M   L Y   
Sbjct: 2   ELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLS 61

Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479
             G A+  K           Q+         + +                     +   +
Sbjct: 62  TYGLAQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLK 121

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK----------HQGVLQLWKDLTEGFA 529
           S +  ++D     A+   + G+A +++K A               + +LQ+  +L    A
Sbjct: 122 SPNRAVRDAAERAALNAPIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIA 181

Query: 530 CVVQEGGSISAR 541
               E  +   R
Sbjct: 182 PGEAEQATALVR 193



 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654
           +Q  + DI+   M               I+L +HDE+V E  P     +   + + M   
Sbjct: 140 IQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHA 199

Query: 655 PSWAKGLPLKA 665
            + A  +PL A
Sbjct: 200 VTMA--VPLDA 208


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 61/468 (13%), Positives = 134/468 (28%), Gaps = 125/468 (26%)

Query: 240  ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA--ILKLNTLSE 297
             ++M    I  I  +D+ + +++          LA+  +  R  S   +  I   N  ++
Sbjct: 1006 NIQMNESAIKKIKGIDIEDESIQDKKKVEIAKYLAEKTLEYRTFSKLYSAYIQSYNK-ND 1064

Query: 298  AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
             + ++  +     F   + TGR S      QN+P+ +  +E   + I       +     
Sbjct: 1065 LIDTNYIVHPNY-FTTGTVTGRMSSSEPNFQNIPKGDLPKEFQVKNIFVSRYLNSNKYFE 1123

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                           G  L+ AD + +E RVLA ++ ++    AF +GEDI++ T     
Sbjct: 1124 DNDYKK------PITG-ILLQADYSQMELRVLAMVSQDENLKNAFISGEDIHLATAKSIT 1176

Query: 418  NTPI--------DKVSKEQ----------------------------------RAIGKVM 435
                         +++ E                                   R   K +
Sbjct: 1177 GMDYLSKDVDENTEITPEVKNLITKYKQYWGKEAENLTDKEILSKIAHDTEVIRKKAKTV 1236

Query: 436  ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
               + Y     G A+            ++Q+   +     +   +Q ++      +    
Sbjct: 1237 NFGIVYGMTAAGLAERINVSLKEAEKFIEQYLNALPGVQNYIITKQTKAKEKGYVETI-- 1294

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                              W  K        ++L                  + ++ +++ 
Sbjct: 1295 ------------------WNRK--------RNLLNAKVY------------LHDIEQIIK 1316

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD--- 608
                +      P   +L Y+++      +    ++ +R+           +Q  + D   
Sbjct: 1317 HYKDKLYSKNTPEEDKLFYNNIIYGLKQMYYVGTKSLRQSINAP------IQGGASDFTF 1370

Query: 609  ----ILCEGMKNATKNGYDI---------------VLTVHDEIVSETP 637
                 L        +    +               + TVHD IV + P
Sbjct: 1371 VSLICLNHAFLTLKELNIPVYNKETNQIEYIRPVLIGTVHDSIVIDIP 1418


>gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei]
          Length = 343

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 107/322 (33%), Gaps = 40/322 (12%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  +L D +           ++   + LG+ +    +    +LA       +  N    L
Sbjct: 49  LKDWLEDASHPKAVFGVKRTQVAANR-LGVHLAGVDF--DLLLASYL---LNTTNNSNDL 102

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELFK 175
               +L + +  +   A + KG+  + P +      H+        + +  +E   +  +
Sbjct: 103 GTVANLHEYQNVQTDEAVYGKGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQ 162

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +    +D E  L L+   +   G R+D   + ++    +Q  K L+E +         + 
Sbjct: 163 QFDLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETF-NI 221

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT- 294
                L + LF   G+ +V  ++       +   + QL KD  + +       I K+ + 
Sbjct: 222 NSPKQLGVILFEKMGLPVVKKTK--TGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQST 279

Query: 295 ----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
               L +++  D ++         ++TGR S      QN+P                   
Sbjct: 280 YVEGLLKSIHQDNKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------- 319

Query: 351 ETIADPLGLASDCVRSCIIASN 372
                        +R   + S+
Sbjct: 320 -----VRLAEGRKIRQAFVPSH 336


>gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis]
          Length = 1781

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 119/331 (35%), Gaps = 44/331 (13%)

Query: 147  CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            CT A    AW+      +    +T  +      L + E  L ++   +   G  ID   +
Sbjct: 1458 CTAAASRAAWEEVQPQLQAINGSTMAV------LLEQEMPLAVVLAGMEAVGVGIDTQHL 1511

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQ---TYALRMYLFLITGIDLV--------- 254
              L+  + Q RK ++ +I +     +  S+    +  L   L    G+            
Sbjct: 1512 QSLRSQLEQRRKDIELEIARALGRRLDLSKFKEVSDVLFGKLEGQLGLQPPPCAKKLKRG 1571

Query: 255  --DMSEGTLKSILS-HSNITQLAKDLILNR------------LASSGSAILKLNTLSEAV 299
                ++  +++++  + +   + K +  +R            L  + +       L  A 
Sbjct: 1572 GYSANKEVMQALVRLNPDCPPVVKLIAEHRRLAYSVWFIRQLLQCARAGAALAQQLEPAA 1631

Query: 300  S--SDGRLRG-----TLQFYGASRTGRWSGCVFQPQN--LPRQERSEEILTQTIQALNRG 350
                 GR  G     T+     S TG  +  +   +   +PR      +L  T +     
Sbjct: 1632 GAAPLGRAGGGPRIWTVLHQTNSDTGAGAVLLGLLRRCCVPRTHELRMLLKGTARE-GDD 1690

Query: 351  ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIY 409
             + +    L    VR   +A+ G  L+ AD   IE R++A  + ++  +  F +G+ D +
Sbjct: 1691 VSASGQHRLLEANVRKAFVAAPGCVLLGADYRAIELRMMAHFSQDEKLLATFQDGQHDPF 1750

Query: 410  VTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
                AK     + +VS+  R + K ++  + 
Sbjct: 1751 RLLAAKWLGKELGQVSQTDRQLIKHLQYGIM 1781


>gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 460

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 133/433 (30%), Gaps = 68/433 (15%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT------DGIIRSS 235
           + E         +       D   + +    +    KKL+E    LT      D  +  +
Sbjct: 2   EIEMPFVAPIVAMQTVRIPFDARKMREEMATMDDRLKKLEE--YALTQKWIVLDSSVSIA 59

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD--LILNRLASSGSAILK-- 291
           R+      YL       L        K+ +  +N+ +L +        L     ++ K  
Sbjct: 60  RRALTNNTYLQDRLYKHLKLTPPPGAKTSIDANNLRKLYEQSNHPFPLLIIEHRSVFKRR 119

Query: 292 --LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
              +T+    + D R+R ++ F      GR +       +L                +  
Sbjct: 120 GFADTILGMYADDSRIRYSI-FQTNHDCGRLAHSEPNFHSLAHD-------------MTC 165

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN----- 404
           G+     L      +RS  +    K  V AD + +E R++A  +G+   I    N     
Sbjct: 166 GDQFYG-LDAPKISIRSAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEPNN 224

Query: 405 -GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-----------VFKTMA 452
             +D +    +K +    D V  E+R   K +   L Y  GAK             K+  
Sbjct: 225 LKDDPFTMLASKWYRKAPDTVLAEERTNCKNLVYGLLYGSGAKKLASDLRMCEEAAKSEV 284

Query: 453 SHCGLDLQQFSQ-------NVKSTSTFEDWEQAESHHLWM----------QDQYPEFAVK 495
           +     L +  +         +            + H +           +      AV 
Sbjct: 285 ARFKSMLPRLMEWLDGIVIRAREEKPIARVTTISARHRYFPDLHSKNNDDRAAAERQAVN 344

Query: 496 DKLIGTACELVKKA-WRAKHQGVLQLWKDLTEGFAC----VVQEGGSISARRVANVPRLV 550
               G+A ++ K A  R       +   +  +         V E  + SA+ +A + R  
Sbjct: 345 TVCQGSAADIFKTAVVRVIDTLRTKYLIERCQLVLTVHDECVFECDARSAKAIAQIVRHA 404

Query: 551 MRRHKRDVHIVLP 563
           M     + ++ +P
Sbjct: 405 MESVANEFNLAVP 417



 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 8/60 (13%)

Query: 598 TENIVQAISRDILCEGMKNATKN--------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              + Q  + DI    +                 +VLTVHDE V E       ++  +  
Sbjct: 343 VNTVCQGSAADIFKTAVVRVIDTLRTKYLIERCQLVLTVHDECVFECDARSAKAIAQIVR 402


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 42/242 (17%)

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMYLFLITGI 251
             +D    + L E    +  +L + +         L     R+      ++   F   G 
Sbjct: 1   MAVDTRAWVALAESAGADHARLADAMDAAAPNPRALPGRETRNWDSPSQVKA-AFAQLGF 59

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
            L    +    + ++H     + +     +  S+   +       E    DG +  +   
Sbjct: 60  ALAATDDDDTLAGIAHPLGALVREYRAAAKRLSTYGRV-----WVEKHVQDGAVLPSWNQ 114

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA  +GR S      Q +PR                                R C  A 
Sbjct: 115 LGA-ESGRMSCSDPNLQQVPR----------------------------GSAHRRCFTAR 145

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
               LV AD +  E R+ A +A E   + A+A+G D++  T A+  N   D V+K+ R +
Sbjct: 146 PEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHALTAARVLNKDEDAVTKDDRQL 205

Query: 432 GK 433
            K
Sbjct: 206 AK 207


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 112/366 (30%), Gaps = 85/366 (23%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +    +GR+ G L     + TGR S      QN P  E+                     
Sbjct: 655 DIRGPEGRVHGALNIN--TETGRLSARRPSLQNQPALEKDRYG----------------- 695

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R    A  G  LVVAD   +E R+LA +AG     +AF  G D +  T    
Sbjct: 696 -------IRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAGGDFHSRTALGM 748

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           ++   D ++K +          +  + G +            ++    + +  +   ++ 
Sbjct: 749 YSNIKDAIAKGE----------VVLEYGEQEEGVDEKDRPALVKDVFASERRKAKVLNFS 798

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            A                     G     + K W             L E    V     
Sbjct: 799 IAY--------------------GKTAHGLSKDWGTS----------LEEAANTVELWYS 828

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                R     +  M   K  V  +L   R L              A+S+    +++  +
Sbjct: 829 DRPEVRDWQEVQKKMAVEKNLVRTLLGRVRNLP------------DASSKNEAFKSHALR 876

Query: 597 LTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
            + N  +Q  + DI    M          + GY +++ +HDE++ E P+        L  
Sbjct: 877 ASINTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTK 936

Query: 650 LMTKNP 655
              +NP
Sbjct: 937 YHMENP 942



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 77/271 (28%), Gaps = 63/271 (23%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI---PSKRWICTSVLARTNGLP 106
              +     +Y  +  V  V HN  F+R + +   GI +    +       +     GL 
Sbjct: 253 GEGVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNRGLD 312

Query: 107 SS------------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----------PP 144
                         + +    L     + + + G  +   F K  +            PP
Sbjct: 313 GGYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRG--MKKIFGKPKLKKDGTPGKTIILPP 370

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDG---------E 184
            +      V+    + EY   D +AT  L + L            P+             
Sbjct: 371 VEEI-QEDVEQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTL 429

Query: 185 RDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-----VKLTDGI 231
            D +         L   +   G  +D + +   +++  ++++  +E        K     
Sbjct: 430 WDFYTFYLAEFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCEGAK 489

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           + +      +R  LF   G       +  ++
Sbjct: 490 LMNVGSGLQIRQLLFA--GAKNKRRDKPGVE 518


>gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort]
 gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort]
          Length = 1067

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 85/252 (33%), Gaps = 31/252 (12%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILN-----RLASSGSAILKLNTLSEAVS-SDGRLRGT 308
             ++ T+  I+ +  + +   D+++       L +  ++  K   L   V+     L G 
Sbjct: 664 KTNKSTIDYIIDNIELKKDCIDVVVLMKKYAELQTKRNSFTK--KLPNLVNKETSTLHGN 721

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
               G + + R S      Q LP                    +  +         R+  
Sbjct: 722 FNSTG-TASARLSSSAPNLQQLPSHT-----------------SDVNKFDYHYPVKRAFK 763

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
                  +   D + IE +++     +   +++F  GEDI+ +T +  +N P++ ++ E+
Sbjct: 764 SRYKNGIMTELDFSAIEMKIIGLYTKDPEMLESFLKGEDIHKSTASIVYNKPVEDITAEE 823

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y        + +    + +++  +       F      ++      D 
Sbjct: 824 RQNTKKVNFGIAYGES---PFSFSGKNNMTVEEAEEIF--NKYFNTKPSVKNSIDATHDF 878

Query: 489 YPEFAVKDKLIG 500
             +    + + G
Sbjct: 879 VQKHGYVEAMQG 890


>gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65]
 gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65]
          Length = 988

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/559 (13%), Positives = 157/559 (28%), Gaps = 140/559 (25%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVL---ARTNGLPSSLKNACLAL 116
           + + +  V HN  F+  + K   G+D  I              ++   +   LK    A 
Sbjct: 260 KSDKIWKVLHNGKFDITMLKDVNGLDRSIKCIDTE-VMYYVGFSQAKKVKKGLKQIARAF 318

Query: 117 -NFSEHLTKMEE--GKALIARF----------------------CKGSIDSPPYDCT--- 148
            +   +   +EE   + L   +                       K  +    Y      
Sbjct: 319 TDMGGYEQPLEEFKNEYLEKHYKNWYNAEIEKYRKALELEGKDPDKAKVSKKDYKAPTNE 378

Query: 149 ------RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL-----------D 191
                   + +     F  Y   D + T  LF +++      R    L            
Sbjct: 379 IDGGKFNYDWIDMEVQF-PYAAADADVTLRLFNKMVGRIKKNRAWVNLVFNIFPRLNDAL 437

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMY 244
            TI   G ++D++   +L +   + R  +  +I         +    +  + +   ++  
Sbjct: 438 TTIEHNGIKLDMERNRELHDKYVKHRDDMKNEILSTIPEIKMIEKERLNFAMEREQIKKI 497

Query: 245 -----------------------------------------LFLITGIDLVDMSE----- 258
                                                    L+ + G +L          
Sbjct: 498 KPADRTKEQKQKFKDYAKNCTGKDGVPNYKFKFTPNDMKRLLYDVLGYELPQEPPYVTGN 557

Query: 259 ------------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
                          +  L  +  T+   DL      +  +    ++ L E    D  ++
Sbjct: 558 PKNITWKSYSVGKAAQEYLEETYKTKFI-DLYSKYSKAETALGSFIDKLPEVRDKDDFVK 616

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            +   Y    +   S   F  QN  R+  +      +                     RS
Sbjct: 617 PSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSY--------------GVKSMYRS 662

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
                 G  L+  D + +E   +A ++ +    +A  + +DI+    +  F+ P D+V+K
Sbjct: 663 RF---KGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLGFHVPYDEVTK 719

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y  G    KT+A   G+D ++  +   +        Q +      Q
Sbjct: 720 NLRTSAKKVSFGIPYSMGI---KTLAKDLGVDEKEAQRIYDAILATM--PQVKQAMADSQ 774

Query: 487 DQYPEFAVKDKLIGTACEL 505
           +    +   + L G   +L
Sbjct: 775 EFAARYKYAETLNGFRRDL 793


>gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
 gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
          Length = 1459

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 132/417 (31%), Gaps = 93/417 (22%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR----QT 238
             E  L  +   +   G   ++  +    + I++  K+L E + K        +     + 
Sbjct: 935  NEMRLIPILSKMELEGICCNIGKLDHYLKRISEFTKELKESVNKDDGDDDDDNNFKRFEE 994

Query: 239  YALRM------YLFLITGIDLVDMSEGTLKSI----LSHSNITQLAKDLILNRLASSGSA 288
            + L        +L    G+D+   S+ TL       +++  +      ++  R  S+   
Sbjct: 995  FKLGSFKEVSGWL-NQHGVDIKSTSKETLIQQKRLNINNQKVVTFIDRVLFYRRLSALKG 1053

Query: 289  ------ILKLNTLSEAVSSDGRLRGTLQ-----FYGASRTGRWSGCVFQPQNLPRQERS- 336
                  +LK    +    +      T Q         + TGR S      Q +PR   S 
Sbjct: 1054 HYIEPYLLKYTNTTTTTKTRSNTNSTFQISCQWNQTGTATGRLSSSEPNLQTIPRTSTSL 1113

Query: 337  --------------------------------------EEILTQTIQALNRGETIADPLG 358
                                                  +    Q +Q  +    I +   
Sbjct: 1114 INPTTATTTTTTTSTNNDLNDLDDLDDLDYNGNDGGSLDPDFIQALQDDDDNNNINNNNN 1173

Query: 359  LASDCV----RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
               D      R+  I+  G  LVV D   +E R++A  + +   I+ F +G D+      
Sbjct: 1174 NDDDDNIINIRNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMAV 1233

Query: 415  KAF---NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK---- 467
            +     +  ++ V KE R   K +   + Y  G + F ++     + + + S ++K    
Sbjct: 1234 RLSDRDDLDVNNVDKETRDRVKRIVYGILY--GIQAF-SLGKLLNIPIYKASDHIKNFYF 1290

Query: 468  ---STSTFEDWEQAESHHLWMQDQ-----------YPEFAVKDKLIGTACELVKKAW 510
                 S F    ++ +    +              +   AV   + G++ +++K A 
Sbjct: 1291 KFDGVSNFIQITKSNAEKSHVVPTLGKRIRKLDSKFKTKAVNSIIQGSSADIIKLAM 1347


>gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262]
 gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262]
          Length = 661

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/483 (15%), Positives = 159/483 (32%), Gaps = 39/483 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQ 59
           M+ L +D+ET       +    A  EQ  I   ++ +                   +L+Q
Sbjct: 26  MNFLVLDLET--DTDGDERSPDATWEQNDIVSASWVFGTGGRGTEKFVYGGIHDMDELIQ 83

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            + +   + VAHN+ F+     +  G+D        T  LA    L  +LK         
Sbjct: 84  DMYEADFV-VAHNAKFDIKWLIRA-GLDPSRILVADTM-LAEYV-LTGNLKAGKKGALTL 139

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
             L K   G        K  +         +  V    L     K D+  TR L+ +L  
Sbjct: 140 GALAKQYLGVT------KDPLVDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRD 193

Query: 180 LSDGERDLWLL----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
               ERD+  L             I   G  +D + V +  ++ ++   +++ D++ + D
Sbjct: 194 -EMMERDVIHLFYNRCLLSPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMID 252

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G  R+ R    ++ +++ +       + +  ++         ++ +     +   +   +
Sbjct: 253 G--RNPRSVPQMQEFIYDVLKFKP--LKKRGVEW---RPTGEEVLQFEARTKKQQAFLDL 305

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K       +++D  L   L ++    T R     +   N  +        +        
Sbjct: 306 KKEFA---QLNAD--LSKNLDYFYGVVTEREDCLFYAQFNQAQTVTHRLSSSGIKTKFEM 360

Query: 350 GETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      S      + ++      ++  D A IE RV  +I  +    +   +G D
Sbjct: 361 YPKAKSIQLQNSPRKYKRLYSARNPDWYVIEMDGAQIEFRVAGYIGQDTRICQDIVDGVD 420

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T +   +   ++V+K+QR   K       Y G       MA +      ++    +
Sbjct: 421 VHRFTASVLNHCDEEEVTKDQRTDAKPDTFKPLYGGQYGTDDQMA-YYEAFRNKYQDITQ 479

Query: 468 STS 470
           +  
Sbjct: 480 AQQ 482


>gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni]
 gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni]
          Length = 787

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 85/539 (15%), Positives = 169/539 (31%), Gaps = 128/539 (23%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRSSRQ 237
           L   E     L   +   G+ ++LD + K  + + +  K+L+    +L      + S ++
Sbjct: 285 LDVIELPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLAGQPFPMDSPKE 344

Query: 238 TYA-LRMYLFLITGIDLVDM---SEGTLKSILSHSN------------ITQLAKDLILNR 281
               L  +L L    D  D+    + +   +L+  N            +++L     L  
Sbjct: 345 ISKVLFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNTLLSKLTNLHPLPA 404

Query: 282 LASSGSAI-----LKLNTLSE-----AVSSDG----RLRGTLQFYGASRTGRWSGCVFQP 327
           +      I        N+L        +SS G    R+  T   Y A  TGR    +   
Sbjct: 405 VIMEWRHINGILEKIFNSLVSTCRLIYISSTGDQPLRISPTYDVYTA--TGRIISIMPNL 462

Query: 328 QNLPR---------QERSEEILTQTIQA-----LNRGETIADPLGLASDCVRS--CIIAS 371
           Q++P+           +S  +    +        +  + I   L  + + +R      A 
Sbjct: 463 QSVPKDIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHAP 522

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRA 430
            G  L+  D   +E R+LA+ + +   +K  +  E    T  A   N P  ++V+  QR 
Sbjct: 523 VGGLLISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQRQ 582

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +  A+ Y  G++   T+AS   +  Q                              
Sbjct: 583 QAKQLCYAILYGMGSQ---TLASQLNVSQQN----------------------------- 610

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                        + +  ++   + GV +            V         +  N    +
Sbjct: 611 ------------AQKLIDSFLNTYPGVQKF-------IKTAVLTAHREGQIKTLNGHIRL 651

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG-----GKLTENIVQAI 605
           +            +   L       +C++    + +      +      G+    I+Q  
Sbjct: 652 LPVLNSKTVFDSGTPYEL-------NCNW----SKKYDLRNHFAVIKAEGQAVNIIIQGS 700

Query: 606 SRDILCEGMKNATKNGYD--------IVLTVHDEIVSET-PDTPYFSVGTLCSL-MTKN 654
           + +I    M    +  +         +VL  HDE++ E  P++     G L    M+  
Sbjct: 701 ASEIAKIAMLAVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSNT 759


>gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1]
          Length = 874

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 102/645 (15%), Positives = 194/645 (30%), Gaps = 125/645 (19%)

Query: 4   LFIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L  DIE  S   L     GV             +   +      D T        + Q L
Sbjct: 181 LTCDIEGFS---LKHFDAGVGT-------ITFCWNQHEGIAFEVDNTRTKEEDPVIRQAL 230

Query: 62  R-------DETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLAR 101
           +       +     + HN  ++  +    L             G+D+  + +  T ++  
Sbjct: 231 KTFFYRFRESGRKMIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENFEDTQIITY 290

Query: 102 TN-----GLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSP-------PYDC 147
                  G    LK        N++    K      L        +D          +  
Sbjct: 291 LATNSCAGNELGLKAQAQEFAGNYAVEEIKDITLIDLDKLLEYNLVDGLSTWYVYNKHYQ 350

Query: 148 TRANHVQ--AWQLFGEYCKR-----------DVEATRELFKRLIPLSDGERDLWLLDQTI 194
           T    +Q   ++ F E+              +++    L K L   ++ E ++W + QT 
Sbjct: 351 TMITDLQLGTYENFKEWVVDIIQMQLTGLPVNMDKVVALDKLLT--AESEHNIWKMMQTK 408

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLF--LITG 250
             +G++  L+     ++    + K +    + LT    +  +      L+  L+     G
Sbjct: 409 IVQGFQYQLEEEALAKKNAKLKTKTVTRKDLGLTKDLEVAYNPGSAPQLQRLLYSKEFLG 468

Query: 251 IDLVDMSE--------GTLKSILSHSNITQL---AKDLILNRLASSGSAILKLNTLSEAV 299
           + ++D+++         TL+ +L+ +   +     K L+  + ++   +      L    
Sbjct: 469 LPVLDLTDSGLPSTGADTLEKLLNQNISEETKDFLKILLEYKASAIILSTFLPAFLKAHP 528

Query: 300 SSDGRLRGTLQFY--GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
             DG        +  G + +GR S      QN+P                          
Sbjct: 529 GPDG-WHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------------------SAGGPLK 569

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
              +  ++ C  A  G   V  D   +E R+ A    +  K+K + +G D +       F
Sbjct: 570 SRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYF 629

Query: 418 NTPIDKVS--------------KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              +  +               K  R   K    AL YQG    + T+  +CG   ++  
Sbjct: 630 GDQMPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQG---TYHTLMQNCGFSKEKAQ 686

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                      + Q  S  +   ++  E A  D  I  A        R +   ++Q    
Sbjct: 687 MI------ENKYRQMYSVSIDYVNEKLEQATHDGYITVA-----FGLRVRTPLLVQTILG 735

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             +       EG +       +   L  R     +  V  SS RL
Sbjct: 736 TNKTPKEAAAEGRTAGNAMGQSYCMLNSRAASAFMKKVRRSSHRL 780


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 179/552 (32%), Gaps = 99/552 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVI--TLCAYAWDDEPVKLWDR-TEQSAMPSDLLQ 59
            +  DIET         G+        I     A+ WDD  +         + +      
Sbjct: 36  TIATDIET--------PGLDR---AFEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTL----GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L +     + HN+ F+    +         +I   + + T +LAR +    ++  +  A
Sbjct: 85  DLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLTA 144

Query: 116 L-----NFSEHLTKMEEGKALIAR------FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           L       S+    M+   A          +   SI+SP Y         A  L  E   
Sbjct: 145 LSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIA-TLKLEPLL 203

Query: 165 RDVEATRELFKRLIP---LSDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213
           R +     L          +D E +  L DQ I  R        G  +D + + + QE  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQE-- 261

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--VDMSEGTLKSILSHSNIT 271
            ++ +++  + +    G+   + +   +  YL  I  +         G LK+     +  
Sbjct: 262 EKDAERIQHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +   +LA     +  L  +    +  GR    +   GAS TGR +  + + Q  P
Sbjct: 322 DHPLTIAQRKLAEVDKVLGYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPELQQFP 381

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           +  R                                II  +G+ L   D + IE   +A 
Sbjct: 382 KDARP-------------------------------IITDDGQGLTSIDWSQIEPVTMAN 410

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG+   +  F  GED+Y     ++   P   ++KE R I KV+ LA  Y  G       
Sbjct: 411 MAGDVGFLIPFEAGEDLYEPI-QRSCGLP---MTKEGRDIAKVVLLATMYGMGVNGLALK 466

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF-----------------AV 494
             H     QQ  + + +         A      + DQY                    AV
Sbjct: 467 IKHTVESAQQIRRQMLAAMPESAKWMA--RVQGIADQYGRIITAAGRILPVDDGGVFRAV 524

Query: 495 KDKLIGTACELV 506
              + G+A +++
Sbjct: 525 NYTVQGSAYDVL 536



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 22/90 (24%)

Query: 586 QLMRERTYGGKL-----------TENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEI 632
           Q  R  T  G++               VQ  + D+L   +    + G    + L +HDE+
Sbjct: 501 QYGRIITAAGRILPVDDGGVFRAVNYTVQGSAYDVLASTIVRMEEAGLGDHLQLAMHDEL 560

Query: 633 VSETPDTPYFSVGTLCSLMTKNPS----WA 658
           + +T          +  +M   P     WA
Sbjct: 561 IVDTEV-----ADDVQQIMLTPPDFLIRWA 585


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 109/343 (31%), Gaps = 51/343 (14%)

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            E   +++T   +A         P   A   VR+C I   G   V ADL  IE R++A I
Sbjct: 8   HEIVRKLITSNEKAPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFVGADLGQIEPRIMAHI 67

Query: 393 A----GEDWKIKAFANGEDIYVTTYAKAFNTP-----IDKVSK----EQRAIGKVMELAL 439
                G++   + F +G D+Y T   + F         +        E R + K  +LA+
Sbjct: 68  MHTKYGDNSMRQIFMDGVDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKLMKTGQLAV 127

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y    +  K+ A    +  +           FE++++       M     E        
Sbjct: 128 SY---DQSPKSFAKKMNVTEEVAHM------FFENFDRTYPSFRTMVKDIREEMKS---- 174

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                     +     G  + + D  E  +   +       +++  +     R   +   
Sbjct: 175 --------CGYVETLFGRKRRFPDFNEVASQTARNE-----QKLIRLYTERKRLRNKKNP 221

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN--- 616
                 R     D     S         +R           ++Q    DIL         
Sbjct: 222 TAADMRRLTAVQDEIDILSEKRGLVGYWLRAAFNA------VIQGTGADILKLIGIRNAE 275

Query: 617 -ATKNGYDIVLTVHDEIVSETPDTP--YFSVGTLCSLMTKNPS 656
              + G+++  ++HDEI +  P+      ++  +  +MT+   
Sbjct: 276 ICRERGWEMNASIHDEIKNSIPNEQLTEGTIDLINEIMTQTVE 318


>gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 80

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
             ++   + S  +R+  IA +G    + D + IEARV+AW+AGE W++  F +   IY  
Sbjct: 2   MYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEA 61

Query: 412 TYAKAFNTPIDKVSKEQRA 430
           + ++ F+ PI++V K  R 
Sbjct: 62  SASQMFHIPIEEVDKNLRQ 80


>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 661

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 109/346 (31%), Gaps = 59/346 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D ET S  P+          +A +   +++  ++           A+P D  + L
Sbjct: 348 KILSLDTETTSTSPM----------EAELVGLSFSVKEKEAFYV------AIPKDREEAL 391

Query: 62  ----------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLK 110
                      D  ++ V  N  ++ ++ +   G+DI  K  +  ++LA     P     
Sbjct: 392 QYVNIFKPLYEDPEILKVGQNIKYDYVVLRNY-GVDIQGK--MFDTMLAHYLIQPELRHN 448

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              +A     + T   E   LI    KG  +               +   EY   D + T
Sbjct: 449 MDYMAETLLHYQTMHIE--ELIGPKGKGQKNMRDLSP---------EEIYEYAAEDADIT 497

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L   L P            D E  L  +   +   G  +D + + +++    +  ++ 
Sbjct: 498 LRLKNVLEPQLKEVGAKSLFWDIEMPLVKVLADMELNGVLLDTESLNEIERTFTERMQQY 557

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +    +L      +      +   LF    I        T + + S   + QL     + 
Sbjct: 558 ERHAFELAGEEF-NISSPKQVGEILFGKMKIVDKPKKTKTGQFVTSEEVLLQLKDKAPIV 616

Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
               +   + KL       L + ++   G +  +      + TGR 
Sbjct: 617 EDILNYRGMKKLLGTYVEALPKLINPRTGHIHTSFN-QAVTATGRL 661


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 103/650 (15%), Positives = 217/650 (33%), Gaps = 121/650 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ----------AVITLC--AYAWDDEPVKLWDRT 48
           M    +DIET +  P  K  ++A  +             I +C   +  D    ++ +R 
Sbjct: 1   MKINSLDIETEAVDPAEK--LYAALQPWRLRQGRSRITSIAVCRPGFTVD----QIVNRG 54

Query: 49  EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTLGID--------IPSKRWICT--- 96
           + +    +++  L      +  AHN+LF+       L           +   +W  T   
Sbjct: 55  DNTLWLREMIDLLDSVGNDVVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLL 114

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           +        P +++ +    N      K +E            +       +  ++ +  
Sbjct: 115 TKWLINGQQPETMRFSYSLANLVATFLKDDEMTPFF-------VKMKSQGVSPGDNPEYC 167

Query: 157 QLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTIN-------DRGYRIDLDLVLK 208
           +  GE    D   T +L  +L   +S  +R  +L +Q            G RID + V +
Sbjct: 168 EKRGEL---DAIMTLKLALKLQAHMSKEQRTGFLTEQDCLLPVANSWIMGIRIDREQVRR 224

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL--RMYLFLITGIDLVDMSEGT------ 260
             +  ++ +  + + +  L +GI  S+++   L  + +L     + ++  +         
Sbjct: 225 NDKFFSESKTAIAKKL-GLDEGIFTSTKRLPDLLFKEWL-----LPVISKTPSGNPSCNA 278

Query: 261 -----LKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQF 311
                L+  L+ +  T++A  L  IL     S      + ++ EA+    DG +  + + 
Sbjct: 279 DTLKLLQYQLNEAGNTEMADKLGLILEAKQYSTLHSKYVKSMIEALEHTGDGYIYASPRI 338

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
           +G + TGR++             +  E      +       +   +      VR  +IA 
Sbjct: 339 FG-TYTGRFTYSS------TTNGKDYEDDNAKTKKFKSAIAVHQ-IPRRDKMVRKSMIAP 390

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------- 423
            G ++  AD +G E+R++A  + +   I+ F+   + +  T A                 
Sbjct: 391 EGYEIYEADASGQESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSDFQVKYKAE 450

Query: 424 -----VSKEQRAIGKVMELALGYQGGAKVFKTMAS---------HCGLD-LQQFSQNVKS 468
                   EQR +GK+  L+  Y+ G K     A            GL  +Q F++  K 
Sbjct: 451 GDEGGYYTEQRQLGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQTGLFLVQTFNRTYKG 510

Query: 469 TSTFEDWEQAESHHLWMQDQY-----------------PEFAVKDKLIGTACELVKKAWR 511
              + +    ES      + +                    A+   + G   ++ + A +
Sbjct: 511 VPQYWEDVVWESRKQGYTETFGGRRYKLTDWHSHKWITESSAINVPIQGAGADMKEIAIK 570

Query: 512 AKHQGVLQ--LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
              + V +     DL +     V    ++      +     +   K    
Sbjct: 571 ETFEKVPEALFLLDLHDANFFYVPSVNAVDLHEKLDHTLNTIDYEKYWGF 620


>gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4]
 gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4]
          Length = 859

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 197/644 (30%), Gaps = 130/644 (20%)

Query: 4   LFIDIETRSPQPLPK--VGVWAYAEQAVITLC-------AYAWDDEPVK-LWDRTEQSAM 53
           L +DIET S   L     G+        IT C       A+  D EP++   +      +
Sbjct: 183 LAVDIETFS---LKHYDCGIG------TITFCWNKHEGIAFPVDYEPIEGATEAPYGRQV 233

Query: 54  PSDLLQYLRDETVMCVA-----HNSLFERILFKKTL-------------GIDIPSKRWIC 95
            + L++ +  +  +        HN  F+       L             G+ I  + W C
Sbjct: 234 HNMLVRSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEGLLHGMSIMLRNWDC 293

Query: 96  TSVLARTN-----GLPSSLKNACLAL--NFSEHLTKMEE--------GKALIARFCKGSI 140
           T ++         G   SLK+       N+++                  L+   C   +
Sbjct: 294 TKLITYLATNSCAGNKLSLKDQAQEYAGNYAQEEINDITRIPLAELLEYNLVDGLCTWYV 353

Query: 141 DSPPYDCTRANHVQ---AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
               +D T  N  Q      +F   C  D+    +L    I +         L Q  N+ 
Sbjct: 354 YEKHWD-TLVNDQQLDVYTNIFKPAC-EDI-IQMQLTGMPINMKTVLGVEEALTQDYNNA 410

Query: 198 GYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGII------RSSRQTYALRMYLFLITG 250
              I D  ++     L+ +E  +    I+K     +       +      L+  LF    
Sbjct: 411 LKTIADSKVIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQFNPNSGVQLQKLLFEFLE 470

Query: 251 IDLVDMSEGTL--------KSILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAV- 299
           + ++ ++   L        KS+ +H+  T + +  D +++  A        +  L  A  
Sbjct: 471 LPVLGLTASKLPATGSGILKSLKNHTQDTSILEILDALIDYKAVDKILTAFIPALKNARQ 530

Query: 300 SSDGRLRGTLQFY--GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
             DG           G + +GR S      QNLP   R                      
Sbjct: 531 GPDG-WHYLFGNLNLGGTVSGRLSSSEPNLQNLPSGSR---------------------- 567

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
              +  ++ C  A  G      D A +E R+ A    +  K+K + +G D +       F
Sbjct: 568 --YAKIIKKCFEAPPGWIFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLRAYAYF 625

Query: 418 NT-------------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
                           I +  K  R   K    AL YQG    + T+  +CG   Q    
Sbjct: 626 GEMMPDIEDTVESVNSIQEKYKAYRQDSKAPTFALTYQG---TYITLMKNCGFPEQ---- 678

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
             K+    E +               + A KD  +  A        R +   + Q+ +  
Sbjct: 679 --KARMVEERYHTLYKVSDDWVQAKLDQAAKDGYVTVA-----FGLRVRTPLLQQVIRGT 731

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           ++       EG +       +   L  R     +  V  S  RL
Sbjct: 732 SKTPYEAEAEGRTAGNALGQSWCLLNNRAGSEFMRKVRNSKHRL 775


>gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 1097

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 75/517 (14%), Positives = 153/517 (29%), Gaps = 109/517 (21%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC---TSVLARTNGLPSSL 109
           M + +   L  + ++   HN+ F+  +     GI +          +  L      P  L
Sbjct: 269 METYMKPLLEKKDIIV--HNASFDWKVI-YIYGIVLNVVIDTFAVFSLTLNAKYQTPVGL 325

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K+    L   + L   +         CK   D    D   A+  +  +L   Y   D + 
Sbjct: 326 KHLISLLLKRDSLELDD--------LCKNG-DFGSIDQNFADLPK--ELVRLYACADADN 374

Query: 170 TRELFKRLIPLSDGE-RDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERK 218
           T  L+  ++  +  E      + Q               G  ++++   +L + I ++ +
Sbjct: 375 TLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRDLQ 434

Query: 219 KLDEDIV-KL----TDGIIRSSRQTYALRMYLFLITG------IDLVDMSEGTLKSILSH 267
           + +  +  +L     D    + +        ++ + G      +D    ++      LS 
Sbjct: 435 EAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTADKKALKNLSK 494

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGAS---RTGR 319
                              + +  L       L E  + DG       F G     +TGR
Sbjct: 495 MTNPDDTPKYPFVNYFQEFNEVNTLRKNFSKNLPEFCTPDG-----FMFSGVKQFLKTGR 549

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      Q                                +D V+  I    G  +   
Sbjct: 550 VSISKPNYQ------------------------------SYNDTVKKYIKPRPGFWMGDM 579

Query: 380 DLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           D + IE RV+A ++ +   I+AF +   D +    +  +  P + VSK  R   K     
Sbjct: 580 DYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFG 639

Query: 439 LGYQGG-------------------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---- 475
           + +  G                   A   +        ++++F  N +  +    +    
Sbjct: 640 IPFGMGNEKLGMTIFGKVSKENTRKATALRERYFKGQDNVREFFVNAQRDAVKYGYTETH 699

Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
               +  +                ++ GTA ++ K+A
Sbjct: 700 FGRRRYYNKETTSVGSIKRQGGNQRIQGTAADIYKQA 736


>gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31]
 gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31]
 gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31]
          Length = 617

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 133/443 (30%), Gaps = 60/443 (13%)

Query: 71  HNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKN-ACLALN-----FSEHL 122
           HN+ F+ ++      + + S   R + T + A                L      + +  
Sbjct: 94  HNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQDGGIGTGLKPLSAFYVDPS 153

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL-------FK 175
               +G         G      +      H      +  Y   DV  T  L         
Sbjct: 154 APDTQGDLTAVFRSLGLTKETGWAGIDLRHP----TYNLYAGLDVIYTARLNPCLDAEHA 209

Query: 176 RL---IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           RL     L + E ++  +   +   G  +DL+ V  L+ ++ +E +K    +       +
Sbjct: 210 RLSIRPTLLEYEHEIAYMCAYMQRAGLALDLEYVDTLRRMLREEEEKH---LYAAAMWGV 266

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            S      +   L L  G  L   ++G    +   + +  LA    L+R         + 
Sbjct: 267 DSVNSGAQVAEAL-LAMGETLTQRTDGGALKV-DKAVLLPLAD---LDR-DWERIGAREP 320

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF-----QPQNLPRQERSEEIL-TQTIQA 346
           N L+EAV              A R G+W                R   +   L  +T + 
Sbjct: 321 NPLAEAV------------LRAKRAGKWVTTYADRFANNHDPHGRIHPNINTLQARTGRM 368

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
              G+  A  L  +   +R  I+       +   D   IE RVLA +A        F NG
Sbjct: 369 SINGDFAAQTLPSSDWMIRRAIVGDAPDHIMGSVDFQAIEMRVLAALADVKRMKDGFVNG 428

Query: 406 E---DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCGLD 458
               DI++ T          + +K  R + K       Y GG            +     
Sbjct: 429 GSDFDIHMYTAQLIKGL---EATKRDRKVFKGAGFGKVYGGGVATIARQTGATEAEIARA 485

Query: 459 LQQFSQNVKSTSTFEDWEQAESH 481
           + ++ +            Q E+ 
Sbjct: 486 VAEYDRVFPEIKRASSRWQREAR 508



 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 22/131 (16%)

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
               A  V E   +         R         +  V  + RRL                
Sbjct: 479 EAEIARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVTGRRLP--------------- 523

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT--VHDEIVSETPDTPYF 642
             L R RTY   +     Q+ +RD+L + M N    G    +   +HDEIV   P     
Sbjct: 524 --LDRNRTYA--VVNYQCQSAARDVLGQAMLNMRDAGLLDYMKLPIHDEIVFSAPKADAK 579

Query: 643 SVG-TLCSLMT 652
            +       MT
Sbjct: 580 DIAREFEKCMT 590


>gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1]
 gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1]
          Length = 624

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 82/506 (16%), Positives = 151/506 (29%), Gaps = 105/506 (20%)

Query: 71  HNSLFERILFKKT--LGIDIPSKRWICTSVLA--------RTNGLPSSLKNACLALNFSE 120
           HN++F+ ++      + ++  + R I T + A        +  G+ + LK          
Sbjct: 94  HNAMFDWLVLDAHADVSLESLAPRTIDTKIKATLIDPRQPQEGGIGTGLKPLSAFYVDPS 153

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL------- 173
                 +  A+      G   +  +      H      +  Y   DV  T  L       
Sbjct: 154 APDTQGDLTAVFRSL--GLTKATGFAGIDLRHP----TYNLYAGLDVIYTARLNPCLDVE 207

Query: 174 FKRL---IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +RL     L+D E ++  +   +   G  +DL+ V  L+ ++ +E  K           
Sbjct: 208 HERLGVRAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLRRMLREEEDKYATIA---ASW 264

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT-----------------QL 273
            + S      +   L L  G  L + ++G    +     +                   L
Sbjct: 265 GVESVNSGAQVSEAL-LAMGETLTETTDGGALKVSKKVLLPLADLDRDWERIGAREPNPL 323

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           A+ ++  + A    +    +  +E     GR+  T+    A RTGR S            
Sbjct: 324 AEAVLRAKRAGKWVS-SYADKFAENHDPLGRIHPTINTLQA-RTGRMS------------ 369

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWI 392
                           G+  A  L  +   +R  ++      +V   D   IE RVLA +
Sbjct: 370 --------------ISGDFAAQTLPSSDWMIRRAVLGDKPDHIVGSVDFQAIEMRVLAAL 415

Query: 393 AGEDWKIK----------AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
           AG     +           + +G DI++ T            +K  R + K       Y 
Sbjct: 416 AGVRRMTEGFLDPDPDPSVYPDGFDIHMYTARLIKG---PNATKRDRKVFKGAGFGKVYG 472

Query: 443 GGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE------- 491
           GG K                + ++ +            Q E+         P        
Sbjct: 473 GGIKTISRQTGAPEHEIARAVAEYDRVFPEIKRASSKWQREARARGCVTVTPTGRILPLD 532

Query: 492 -----FAVKDKLIGTACELVKKAWRA 512
                  V  K   TA +++ +A   
Sbjct: 533 RNRMYAVVNYKCQSTARDVLGQAMIN 558


>gi|295426488|ref|ZP_06819138.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295063856|gb|EFG54814.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 122

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ ++L   P+   E   + +DQ INDRG RID  LV            +  +   KLT
Sbjct: 1   MEITQKLERFPVPKNEWGNYWMDQDINDRGIRIDQQLVNNAIRCQKNFHDQYLQVSQKLT 60

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      L+ +L    G+    +S+  +  +L     T     ++  R   S S+
Sbjct: 61  G--LANPNPPLQLKDWLH-QQGVKTNSLSKAAVTQLL--HTTTGTVHQVLSLRQLLSKSS 115

Query: 289 ILKLNTL 295
           + K   +
Sbjct: 116 VKKYQAM 122


>gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 1015

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 75/517 (14%), Positives = 153/517 (29%), Gaps = 109/517 (21%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC---TSVLARTNGLPSSL 109
           M + +   L  + ++   HN+ F+  +     GI +          +  L      P  L
Sbjct: 187 METYMKPLLEKKDIIV--HNASFDWKVI-YIYGIVLNVVIDTFAVFSLTLNAKYQTPVGL 243

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K+    L   + L   +         CK   D    D   A+  +  +L   Y   D + 
Sbjct: 244 KHLISLLLKRDSLELDD--------LCKNG-DFGSIDQNFADLPK--ELVRLYACADADN 292

Query: 170 TRELFKRLIPLSDGE-RDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERK 218
           T  L+  ++  +  E      + Q               G  ++++   +L + I ++ +
Sbjct: 293 TLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRDLQ 352

Query: 219 KLDEDIV-KL----TDGIIRSSRQTYALRMYLFLITG------IDLVDMSEGTLKSILSH 267
           + +  +  +L     D    + +        ++ + G      +D    ++      LS 
Sbjct: 353 EAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTADKKALKNLSK 412

Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGAS---RTGR 319
                              + +  L       L E  + DG       F G     +TGR
Sbjct: 413 MTNPDDTPKYPFVNYFQEFNEVNTLRKNFSKNLPEFCTPDG-----FMFSGVKQFLKTGR 467

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      Q                                +D V+  I    G  +   
Sbjct: 468 VSISKPNYQ------------------------------SYNDTVKKYIKPRPGFWMGDM 497

Query: 380 DLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           D + IE RV+A ++ +   I+AF +   D +    +  +  P + VSK  R   K     
Sbjct: 498 DYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFG 557

Query: 439 LGYQGG-------------------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---- 475
           + +  G                   A   +        ++++F  N +  +    +    
Sbjct: 558 IPFGMGNEKLGMTIFGKVSKENTRKATALRERYFKGQDNVREFFVNAQRDAVKYGYTETH 617

Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
               +  +                ++ GTA ++ K+A
Sbjct: 618 FGRRRYYNKETTSVGSIKRQGGNQRIQGTAADIYKQA 654


>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
 gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
          Length = 1757

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 93/553 (16%), Positives = 167/553 (30%), Gaps = 122/553 (22%)

Query: 6    IDIETRSPQPLPKVGVWAYAEQAVITLCAYA--WDDEPVKLWD-RTEQSAMPSDLLQYLR 62
            +D+ET S   L    V     +  I L       D +P  L         +         
Sbjct: 1146 LDLETCSATQLWAPAV---PGRPFIRLVGTEAGIDTDPSSLVPWLASGGRL--------- 1193

Query: 63   DETVMCVAHNSL-FERILFKKTLGIDI----PSKRWICTSVLARTNGLP-----SSLKNA 112
                  +AHN   F+ +   +  G+D+       + I T VLA     P       L   
Sbjct: 1194 ------IAHNGFGFDYLALARHHGLDLLQAAEEGKLIDTMVLALALDPPKPPVDGKLSGG 1247

Query: 113  CLALNFSEHL--------TKMEEGKALIARFCKGS--------IDSPPYDCTRANHVQAW 156
             +A  +S            K  + K L     K          +++  Y     NH    
Sbjct: 1248 QIARLYSLDRCAERAGVPGKTNDLKKLARDAAKAHGHTGKPKQLEAIGYGLIPRNHPD-- 1305

Query: 157  QLFGEYCKRDVEATRELFK------RLIPLSDGERDLW-LLDQTINDRGYRIDLDLVLKL 209
              +  Y + DV A R ++       +L P +  E  +   L   I   G R+DL L    
Sbjct: 1306 --YLAYLQGDVAACRAVYDALVPDGQLSPYARREMRVMGRLVTGITLHGTRLDLQLTQSR 1363

Query: 210  QELIAQERKKLDEDIVK------LTDGIIRSSRQTY-----ALRMYLFLITGIDLV---- 254
             + I   +++    +V       +T     ++                   G+ L     
Sbjct: 1364 YDAIEARKEECRSRLVADYGLPTMTSSGAAAANPLSCKGAAEAITKAAADVGLVLPLTAT 1423

Query: 255  ---DMSEGTLKSILSH--SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                 S+  L  +L        Q   +L+   L+ +G+  +    L +   SDGR+    
Sbjct: 1424 GKPSTSKDALGPLLEQVREQGNQTQTELLETILSLTGARSVYGTAL-DHCQSDGRIHP-- 1480

Query: 310  QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
            Q      +GR+S                           RG  + +         R+  +
Sbjct: 1481 QVAPLQASGRFSLTNP----------------GITVFGKRGGRVTE---------RAIFL 1515

Query: 370  AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
               +  +L+ ADL+ I+ R +A  A +   ++ F  G D +    A              
Sbjct: 1516 PDADDHRLLAADLSQIDMRAMAAHAQDPAYLELFQPGRDAHSEIAAAV---------GLS 1566

Query: 429  RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
            R+  K +     Y                  +QF Q ++ +     + Q  +    ++++
Sbjct: 1567 RSDAKAIGHGWNYGMSVNGMVRHG-ISQALAEQFDQGMRRS-----FPQLVAWRDQIRER 1620

Query: 489  YPEFAVKDKLIGT 501
                 + D   G 
Sbjct: 1621 AASGQLLDNGFGR 1633



 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 33/267 (12%)

Query: 399  IKAFANGEDIYVTTY----AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
            +    +   I+        +  F+     ++   +  G+V E A+            A  
Sbjct: 1469 LDHCQSDGRIHPQVAPLQASGRFSLTNPGITVFGKRGGRVTERAIFLPDADDHRLLAADL 1528

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
              +D++  + + +  +  E ++         +D + E A    L  +  + +   W    
Sbjct: 1529 SQIDMRAMAAHAQDPAYLELFQPG-------RDAHSEIAAAVGLSRSDAKAIGHGWNYGM 1581

Query: 515  QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                 +   +++  A    +G   S  ++      +  R      +     R +   +  
Sbjct: 1582 SVNGMVRHGISQALAEQFDQGMRRSFPQLVAWRDQIRERAASGQLLDNGFGRMMR-PNP- 1639

Query: 575  GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-IVLTVHDEIV 633
                          R  T G  L     Q  +RD++   +          +   VHDE+V
Sbjct: 1640 -------------ARAHTQGPALMG---QGTARDLMMLALLRLPLWLVPQLRFLVHDELV 1683

Query: 634  SETPDTPYFSV-GTLCSLMTKNPSWAK 659
               P          +   MT    WA 
Sbjct: 1684 FSVPVARLDEAGEQILQAMTF--DWAP 1708


>gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 590

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 114/400 (28%), Gaps = 69/400 (17%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
           A F       P          +             + +     RL  L   E    ++  
Sbjct: 142 ALFEDPGTVPPLRHTPEELRTEYAAQQRALAGAGTDGSMR--GRLQLLLAAESAGAMIAA 199

Query: 193 TINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALR 242
            +   G     DL   +                  + L  ++ +L      +      L 
Sbjct: 200 EMQYAGVPWREDLHEDILAGYLGPRPPVGQRPARLEALAAELRRLLGSPALNPDSPQELI 259

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             L    GI++   S+  LK  L H  I  L +   L+RL ++        +  +A  + 
Sbjct: 260 RALH-RNGIEVKSTSKWELKD-LPHPVIGPLLEYKKLSRLHTANGW-----SWLDAWVAG 312

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR R      G   +GRW+        +PRQ                             
Sbjct: 313 GRFRPEYVVGGVV-SGRWASRGGGALQIPRQ----------------------------- 342

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            VR  + A  G KL+VAD + +E RVL  +A +    +A  + +D+Y    AK F     
Sbjct: 343 -VRGAVHADPGYKLIVADASQLEPRVLVALARDSVMAEAARD-QDLYAGIAAKGFG---- 396

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS----------TSTF 472
                 RA  KV  L   Y   +     +         +    V+            +T 
Sbjct: 397 ----GDRAKAKVALLGAMYGATSGESGRLMPQLARTYPRAVDFVEQAARAGEAGGTVTTR 452

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                      W Q Q    A + +   +      +  R 
Sbjct: 453 LGRSSPPPSERWYQSQRSATAEEQRRAESIARSRGRFTRN 492


>gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 835

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 92/567 (16%), Positives = 173/567 (30%), Gaps = 123/567 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L  DIET         G+   +E   I   A++       K+ D+ +       L ++  
Sbjct: 181 LACDIET--------TGLELGSELYSIA-FAWSQHKGCAFKVTDKVQ-------LKRFFE 224

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             + + + HN+ F+     K +                  +GL +  +N       +   
Sbjct: 225 SYSGVLIFHNATFDI----KHIIYHCFMDNPRD--FKGMIHGLHTMCRNIEDTKIIAYLA 278

Query: 123 TKMEEGKAL-IARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
           T   +G  L +       + +   D     NH  A  L  EY  +D  AT  +F +  P 
Sbjct: 279 TNNTQGNILGLKELSHEFVGNYAIDVKHVLNHPLATVL--EYNLKDTLATYWVFNKYKPK 336

Query: 180 -LSDGERDLWLLDQ--------TINDRGYRIDLDLV--------LKLQELIAQ-----ER 217
            LSD +  ++             I   G  +++D V         +  + + Q       
Sbjct: 337 MLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVIVKKQLQNQANDALEQIYASEHV 396

Query: 218 KKLDEDIVKLTDGIIRS------------------SRQTYALRMYLFLITGIDLVDMSE- 258
           K +  ++       I S                     T  L + L+   G+ ++D +  
Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSTAHLAILLYDYLGLPILDYTPN 456

Query: 259 -------GTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDG--RLRG 307
                  GT++ ++ H+    +   L  +L            +    +A   D    L G
Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +    G + + R S      Q LP                                ++ C
Sbjct: 517 SFNL-GGTLSNRLSSSNPNLQQLPSGS------------------------TYGKTIKQC 551

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--- 424
             A +    V AD   +E R+   +  +  K K + +G D +       F   +  +   
Sbjct: 552 FQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFANQMPDIINT 611

Query: 425 ----------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
                       E R   K    AL Y G    + T+  +CG    +  +    T+  + 
Sbjct: 612 KESINSIKHKYPELRQESKAPSFALQYGG---QYFTLMKNCGFSESKAKEI--ETNYHKM 666

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGT 501
           +E +++      +Q  +    D   G 
Sbjct: 667 YEVSDAWTQRKLEQCAKQGYIDVAFGL 693


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 102/552 (18%), Positives = 178/552 (32%), Gaps = 99/552 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVI--TLCAYAWDDEPVKLWDR-TEQSAMPSDLLQ 59
            +  DIET         G+        I     A+ WDD  +         + +      
Sbjct: 36  TIATDIET--------PGLDR---AFEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTL----GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L +     + HN+ F+    +         +I   + + T +LAR +    ++  +  A
Sbjct: 85  DLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLTA 144

Query: 116 L-----NFSEHLTKMEEGKALIAR------FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           L       S+    M+   A          +   SI+SP Y         A  L  E   
Sbjct: 145 LSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIA-TLKLEPLL 203

Query: 165 RDVEATRELFKRLIP---LSDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213
           R +     L          +D E +  L DQ    R        G  +D + + + QE  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQE-- 261

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--VDMSEGTLKSILSHSNIT 271
            ++ +++  + +    G+   + +   +  YL  I  +         G LK+     +  
Sbjct: 262 EKDAERIQHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +   +LA     +  L  +    +  GR    +   GAS TGR +  + + Q  P
Sbjct: 322 DHPLTIAQRKLAEVDKVLGYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPELQQFP 381

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           +  R                                II  +G+ L   D + IE   +A 
Sbjct: 382 KDARP-------------------------------IITDDGQGLTSIDWSQIEPVTMAN 410

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG+   +  F  GED+Y     ++   P   ++KE R I KV+ LA  Y  G       
Sbjct: 411 MAGDVGFLIPFEAGEDLYEPI-QRSCGLP---MTKEGRDIAKVVLLATMYGMGVNGLALK 466

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF-----------------AV 494
             H     QQ  + + +         A      + DQY                    AV
Sbjct: 467 IKHTVESAQQIRRQMLAAMPESAKWMA--RVQGIADQYGRIITAAGRILPVDDGGVFRAV 524

Query: 495 KDKLIGTACELV 506
              + G+A +++
Sbjct: 525 NYTVQGSAYDVL 536



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 22/90 (24%)

Query: 586 QLMRERTYGGKL-----------TENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEI 632
           Q  R  T  G++               VQ  + D+L   +    + G    + L +HDE+
Sbjct: 501 QYGRIITAAGRILPVDDGGVFRAVNYTVQGSAYDVLASTIVRMERAGLGDHLQLAMHDEL 560

Query: 633 VSETPDTPYFSVGTLCSLMTKNPS----WA 658
           + +T  +       +  +M   P     WA
Sbjct: 561 IVDTEVS-----DEVQQIMLTPPDFLIRWA 585


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 107/300 (35%), Gaps = 26/300 (8%)

Query: 341 TQTIQALNRGETIADPLGLASDCV---RSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
               +A+  G   A     A + +   R  ++AS G   V AD + +E R++A ++G+  
Sbjct: 189 DANAEAMKDGGLGARCPWFAKEAMIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPD 248

Query: 398 KIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            +K FA+G D++ T  A         + +++E+R   K++   + Y   A     +    
Sbjct: 249 LLKVFADGGDVFRTIAAALKGRGKKAEDITEEERRQTKIVVYGVLYGQSADA---LVPQL 305

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L   +  +     +  + + +       +++   E    + L+G      ++     + 
Sbjct: 306 RLSRPEAFKI--RQTVLKTFPKLTEFLKKVKEDCKECGYVETLLGR-----RRYLPQINS 358

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
                        A    +G +    ++A     V  R +R   +  P+ + +       
Sbjct: 359 TDKAERSRAERQAANTTTQGSAADLLKLAAT--NVAARLERCEWMSRPAGKPICTPPP-- 414

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                N A           G     +     RD      + A +    +VL++HDE++ E
Sbjct: 415 -----NAAAGGTSSSALASGTADATVPCRFPRD--GGRSQLARRPACRLVLSIHDELLYE 467


>gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
 gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
          Length = 359

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 103/325 (31%), Gaps = 53/325 (16%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIA----GEDWKIKAFANGEDIYVTTYAKA 416
              VR       G   + ADL+ IE R++A I     G++     F  G D+Y T     
Sbjct: 43  GARVRGAFKPQEGWFYLAADLSQIEPRIMAHIMWTIYGDNSLRSIFTAGRDLYTTMAMMV 102

Query: 417 FNTPIDK-VSKEQ--------RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           FN      V K          RA+ K   LA  Y    +      +  G+ ++       
Sbjct: 103 FNLDEKYCVDKAYDPTGTFKPRAMMKTGVLAKSY---DQQVGNFCNTMGVSIE------V 153

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               +E ++ A    + M     +FA       T              G  + +  L E 
Sbjct: 154 GNMFYEKFDTAFPSFINMVRDKRKFAYDKGYSETL------------YGRKRRFPQLAEW 201

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
              V +    +    +            R     L +   L+        + +       
Sbjct: 202 SKIVKRNERKLMDLYIERARIRKKVVKSRYDFERLDTLEELIKP-----MAEMRNMVGYW 256

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETP--DTPY 641
            R          +++Q    DIL   M        K G+ +  ++HDEI  E P  D   
Sbjct: 257 ERAS------FNSVIQGTGADILKLNMIRLYRECQKRGWYLNASIHDEIKVEVPRKDLTL 310

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAE 666
            +   +  +MTK+      LPLK++
Sbjct: 311 ENCDLITDIMTKSVE--LSLPLKSD 333


>gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2]
 gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2]
          Length = 876

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 94/642 (14%), Positives = 188/642 (29%), Gaps = 118/642 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR- 62
           L  DIE  S   L       Y          +   +      D T+  A    L Q L+ 
Sbjct: 182 LSCDIEGFS---LKH-----YDAGIGTITFCWDQHNGIAFEVDNTKTKAEDHVLRQALKT 233

Query: 63  ------DETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICT---SVLA 100
                       + HN  ++  +    L             G+D+  + W CT   + LA
Sbjct: 234 FFYRYRATGRRMIYHNICYDAYVLIYQLFMDHILDQEGFLEGLDVMLENWECTQLITYLA 293

Query: 101 RTNGLPSSLKNACLALNF-------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             +   + L     A  F               E   L+       + +          +
Sbjct: 294 TNSCAGNELGLKAQAQEFAGNYAVEDIQDITQIELPKLLEYNLVDGLSTWFVYNKHYQTM 353

Query: 154 QAWQLFGEYCKRDVEATRELFKRLI---PLS-------------DGERDLWLLDQTINDR 197
              Q F  Y     +A +++ +  +   P++             + E ++W + QT   +
Sbjct: 354 INDQQFEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNDQLGAESEHNVWKMLQTKIVQ 413

Query: 198 GY--RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF--LITGIDL 253
           G+  +++ + + K  E +  +     +        +  +      L+  L+     G+ +
Sbjct: 414 GFVYQLEENALKKKNEKLKTKVVTRVDLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGLPV 473

Query: 254 VDMSE--------GTLKSILSHSNITQLAKDL---ILNRLASSGSAILKLNTLSEAVSSD 302
           +D+++         TL+ +L+ +   +  + L   +  + ++   +      L      D
Sbjct: 474 LDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPGPD 533

Query: 303 GRLRGTLQFY--GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           G        +  G + +GR S      QN+P                             
Sbjct: 534 G-WHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------------------SAGGPLKSRL 574

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           +  ++ C  A  G   V  D   +E R+ A    +  K+K + +G D +       F   
Sbjct: 575 AKLIKKCFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGDQ 634

Query: 421 IDKVS--------------KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           +  +               K  R   K    AL YQG    F T+  +CG   ++     
Sbjct: 635 MPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQG---TFHTLMVNCGFSKEKAQDI- 690

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 + ++ +  +     +Q           G          R +   + Q      +
Sbjct: 691 -ENKYKKMYKVSIEYVEKKLEQATRDGYITVAFGL---------RVRTPLLAQTILGTNK 740

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                  EG +       +   L  R     +  V  S  +L
Sbjct: 741 TPKEAAAEGRTAGNAMGQSFCMLNSRAASEFMKKVRASKHKL 782


>gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 676

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 89/535 (16%), Positives = 164/535 (30%), Gaps = 107/535 (20%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLART 102
           + +    S  P   LQ L D  V  V H++  +      +LG++ P   W  C +  AR 
Sbjct: 109 VINVASPSIRPK--LQSLFDLPVTYVTHDAKPDLHCIW-SLGLNEPRYWWDTCIAEKARY 165

Query: 103 NGLPSSLK---NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA--------N 151
            G  ++ K   +           T  E+              +   D   +         
Sbjct: 166 LGQHNNAKPTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSDLASSAKLLMGSEQ 225

Query: 152 HVQAWQLFGEYCKRDVEATRE--------------LFKRLIPLSDGERDLWLLDQTINDR 197
              ++  F       +  T                + + LI +   E    + +  I   
Sbjct: 226 DCPSFSEFQIERTSQLSITVAKLYLTQSQSCLMFGIHQHLISI---EMPWVVTNAAIEWN 282

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G+++  D   K  +++    +KL+    +L    + +    +  +  LF   G+  +   
Sbjct: 283 GFKVCRD---KCSQILEACERKLNLYSQELAQLGMTNPNSQHQ-KQALFASLGL--LHHF 336

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGS---AILKLNTL-SEAVSSDGRLRGTLQFYG 313
           +           +++           +  +   ++ K   L    V SDGR+    +   
Sbjct: 337 KDGEDYSFQREMLSKNYALHPAVAFLAKYTHIDSVYKDVILQPGIVGSDGRVHSEQKQLT 396

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR +        LP                                +R  ++A +G
Sbjct: 397 AA-TGRQATVAPNILGLP------------------------------AVLRPLVVAQDG 425

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID----------- 422
             +   DLA IE  + A + G+   +K +  G D+Y     + F   ++           
Sbjct: 426 YAIGEVDLAQIEVAIAAGVYGDSNLVKMYNQG-DLYTAMAQEFFCDELESEYRICDSSTF 484

Query: 423 -KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ----FSQNVKSTSTFE 473
            +   E+RAI K   L L Y     G AK      +     + +    F +  K+     
Sbjct: 485 KEKYPEKRAIMKQCTLGLIYGITSFGIAKKLNISVNKATELMDKFLSMFPELQKAIEKMP 544

Query: 474 DWEQAESH-------HLWMQDQYPE------FAVKDKLIGTACELVKKAWRAKHQ 515
            +     H       H + Q           + V   + GTA  L K A    HQ
Sbjct: 545 QYGALRGHVSTATGLHRYRQLDAKRGHTEKNWMVNMPVQGTAAALFKAAGNRLHQ 599


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 177/552 (32%), Gaps = 99/552 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVI--TLCAYAWDDEPVKLWDR-TEQSAMPSDLLQ 59
            +  DIET         G+        I     A+ WDD  +         + +      
Sbjct: 36  TIATDIET--------PGLDR---AFEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTL----GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L +     + HN+ F+    +         +I   + + T +LAR      ++  +  A
Sbjct: 85  DLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLTA 144

Query: 116 L-----NFSEHLTKMEEGKALIAR------FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           L       S+    M+   A          +   SI+SP Y         A  L  E   
Sbjct: 145 LSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIA-TLKLEPLL 203

Query: 165 RDVEATRELFKRLIP---LSDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213
           R +     L          +D E +  L DQ    R        G  +D + + + QE  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQE-- 261

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--VDMSEGTLKSILSHSNIT 271
            ++ +++  + +    G+   + +   +  YL  I  +         G LK+     +  
Sbjct: 262 EKDAERIQHEALLAAHGLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGF 321

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                    +LA     +  L  +    S  GR    +   GAS TGR +  + + Q  P
Sbjct: 322 DHPLTTAQRKLAEIDKVLGYLTKVERQASVTGRCHPQVGVLGASATGRMAYSMPELQQFP 381

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           +  R                                II  +G+ L   D + IE   +A 
Sbjct: 382 KDARP-------------------------------IITDDGQGLTSIDWSQIEPVTMAN 410

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG+   +  F  GED+Y     ++   P   ++KE R I KV+ LA  Y  G       
Sbjct: 411 MAGDVGFLIPFEAGEDLYEPI-QRSCGLP---MTKEGRDIAKVVLLATMYGMGVNGLALK 466

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF-----------------AV 494
            +H     QQ  + + +         A      + DQY                    AV
Sbjct: 467 INHTVESAQQIRRQMLAAMPESAKWMA--RVQGIADQYGRIITAAGRILPVDDGGVFRAV 524

Query: 495 KDKLIGTACELV 506
              + G+A +++
Sbjct: 525 NYTVQGSALDVL 536



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 24/109 (22%)

Query: 586 QLMRERTYGGKL-----------TENIVQAISRDILCEGMKNATKNGYDIVLTV--HDEI 632
           Q  R  T  G++               VQ  + D+L + +    + G    L V  HDE+
Sbjct: 501 QYGRIITAAGRILPVDDGGVFRAVNYTVQGSALDVLHDTIVRMERAGLADELHVAMHDEL 560

Query: 633 VSETPDTPYFSVGTLCSLMTKNPS----WAKGLP-LKAEGYEAKR-YRK 675
           +  TP         +  +M   P     WA  +P L+ +  + +  ++K
Sbjct: 561 IVSTPV-----ADEVQQIMLTPPDFLIRWAGRVPVLRTDAADMEHAWKK 604


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 111/380 (29%), Gaps = 99/380 (26%)

Query: 280 NRLASSGSAILKLNTLSEAVSSD----GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            R++++ +++  L+ L E +  D    GR+  +L     + TGR        QN P    
Sbjct: 528 IRISAAITSV--LSPLIERIKYDEDGFGRIHPSLAL--DTTTGRLCCRKPNLQNPPSAH- 582

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R    A  G  L+V D + +E R+LA ++  
Sbjct: 583 -----------------------NDLYSIRKAFSARPGNTLIVGDYSQLELRILAHMSRC 619

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  I+    G DI+       F         E   + + +  A G  G         +  
Sbjct: 620 ESMIRQLNQGGDIHSQCAVDLF--------PE---VAEAV--ANGSVGRLHSRIDRRATV 666

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            + +    +      + +     +     + +    +   ++ +    +L     R    
Sbjct: 667 QVVIDDA-EAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRD--- 722

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
                                     R  N  + V R     +  V   S    +  V G
Sbjct: 723 -----------------------MFTRWNNSKKGVERWKAEILREVRACSGEFRHPRVGG 759

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
              +   A+ +  RE T                           +G  IV+ VHDE++ E
Sbjct: 760 RHRHDGHASRRSRRETT--------------------------AHGVKIVMQVHDEVILE 793

Query: 636 TP-DTPYFSVGTLCSLMTKN 654
            P +    +V  +  LM   
Sbjct: 794 GPAENATDAVPIVRDLMEHP 813


>gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 835

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 90/567 (15%), Positives = 171/567 (30%), Gaps = 123/567 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L  DIET         G+   +E   I   A++  +    K+ D+ +       L ++  
Sbjct: 181 LACDIET--------TGLELGSELYSIA-FAWSQHEGCAFKVTDKVQ-------LKRFFE 224

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             + + + HN+ F+     K +                  +GL +  +N       +   
Sbjct: 225 SYSGVLIFHNATFDI----KHIIYHCFMDNPRD--FKGMIHGLHTMCRNIEDTKIIAYLA 278

Query: 123 TKMEEGKAL-IARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFKRLIP- 179
           T   +G  L +       + +   D     NH  A  L  EY  +D   T  +F +  P 
Sbjct: 279 TNNTQGNILGLKELSHEFVGNYAIDVKHVLNHPLATVL--EYNLKDTLGTYWVFNKYKPK 336

Query: 180 -LSDGERDLWLLDQ--------TINDRGYRIDLDLV--------LKLQELIAQ-----ER 217
            LSD +  ++             I   G  +++D V         +  + + Q       
Sbjct: 337 MLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVVVKKQLQNQANDALEQIYASEHV 396

Query: 218 KKLDEDIVKLTDGIIRS------------------SRQTYALRMYLFLITGIDLVDMSE- 258
           K +  ++       I S                        L + L+   G+ ++D +  
Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSIAHLAILLYDYLGLPILDYTPN 456

Query: 259 -------GTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDG--RLRG 307
                  GT++ ++ H+    +   L  +L            +    +A   D    L G
Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +    G + + R S      Q LP                                ++ C
Sbjct: 517 SFNL-GGTLSNRLSSSNPNLQQLPSGS------------------------TFGKTIKQC 551

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--- 424
             A +    V AD   +E R+   +  +  K K + +G D +       F   +  +   
Sbjct: 552 FQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFVNQMPDIINT 611

Query: 425 ----------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
                       E R   K    AL Y G    + T+  +CG    +  +    T+  + 
Sbjct: 612 KESINSIKHKYPELRQESKAPSFALQYGG---QYFTLMKNCGFSESKAKEI--ETNYHKM 666

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGT 501
           +E + +      +Q  +    D   G 
Sbjct: 667 YEVSNAWTQRKLEQCAKQGYIDVAFGL 693


>gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H]
 gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H]
          Length = 1245

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 111/319 (34%), Gaps = 45/319 (14%)

Query: 230  GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-------ILNRL 282
            G    ++    L   +  +     +  +  TLK I+      +L  +        I+N +
Sbjct: 749  GTSEGTKPFPQLHNTINEMRRSKSLQTNNKTLKLIVDEIERNELIAEKEKEKMKKIINNV 808

Query: 283  ASSGSAIL----KLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                 +       +  L + +     ++       GAS TGR S      QN+    R  
Sbjct: 809  KLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGAS-TGRLSCEHPNLQNI--HSRFR 865

Query: 338  EILTQTIQALNRGETIADPLGLASDCVRSCII---------ASNGKKLVVADLAGIEARV 388
              ++   +  +  E   D L +A D  R  +           S+G+ L+  D   +E  V
Sbjct: 866  CAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQMELFV 925

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444
            +A+++ +   +K   +G D++V T    FNT   +V+ E R + K +   + Y     G 
Sbjct: 926  MAYLSFDRQLLKMLQSG-DVFVETAKVLFNTT--QVTSELRRMTKTVIYGILYGQTENGL 982

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM--------------QDQYP 490
            A+            +  F Q   +   F + ++    H+                     
Sbjct: 983  ARSLLISEGMASNLISNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGRKRIIEPTVKNKY 1042

Query: 491  EFAVKDKLIGTACELVKKA 509
              ++   + G A +++K A
Sbjct: 1043 RISMNTPIQGCAADIMKFA 1061


>gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1]
          Length = 865

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/512 (14%), Positives = 151/512 (29%), Gaps = 128/512 (25%)

Query: 70  AHNSLFERILFKKTL-------------GIDIPSKRWICTSV---LARTNGLPSSLKNAC 113
            HN  ++  +    L             G+D+ +K W  T +   LA  +   + L    
Sbjct: 252 WHNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYLATNSCAGNHLGLKA 311

Query: 114 LALNFSEHLTKME-------EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +  ++ +    +         K L+        +     CT   + + WQ   +  +R 
Sbjct: 312 QSHEYAGNYALDDIKDISLIPKKDLVRY------NLIDSLCTWYVYGKHWQTMNDDNQR- 364

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI------------- 213
                EL+  L                +   G  +D++ VLK+++++             
Sbjct: 365 -----ELYDDLF------MPSLKNIIQMQLTGIPLDMEEVLKVEKILIKEKVTFYQEMLK 413

Query: 214 --------------AQERKKLDEDIVKLTDGIIR---SSRQTYALRMYLFLITGIDLVDM 256
                           E+K       ++T        +      L+  L+ I G+ ++D+
Sbjct: 414 FSVITDLVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQELLYDIMGLPVIDL 473

Query: 257 SEGTLKSILSHSNITQL------AKDLILNRLASSGSAILKL--------NTLSEAVSSD 302
           +  T         + +L       +   L  L    S + K+            +A    
Sbjct: 474 T-DTKAPATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITSFIPAFKAAPKAEDGW 532

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
             L G     G + +GR S      Q +P  +                          S 
Sbjct: 533 HYLFGFFNL-GGTVSGRLSSSNPNLQQIPSSKSP-----------------------YSK 568

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            ++ C  A  G   V  D A +E R+ A    +  K+K + +G D +       F   + 
Sbjct: 569 VIKKCFRAPKGFLFVGLDFASLEDRISAVTTKDSNKLKVYTDGYDGHCLRAYAYFKDEMP 628

Query: 423 KV-------------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            +              K+ R   K     L Y+G    +  +   CG D     Q    +
Sbjct: 629 DIINTVESINSIEGKYKDIRQKSKTPTFLLTYRG---TYMGLMQKCGFDEPTAKQI--ES 683

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              E +++++       ++  +        G 
Sbjct: 684 RYHELYKESDDWVNARLEEATKVGYVTAAFGL 715


>gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi]
          Length = 2035

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 140/448 (31%), Gaps = 61/448 (13%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E  + ++       G+ +D   +  L E +   R+++  D   L  G       + A+ 
Sbjct: 1601 REMPVHVVLARSEVVGFPVDRTALGALIERLKASRERIATDARLLNGGRKLDFGSSRAVA 1660

Query: 243  MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--S 300
              L L    +        L+ +        LA  +I  R   S  A   +  L   +  S
Sbjct: 1661 AALRLAASRERPRTVRQVLERL-----DNPLAALVIAYRKIDSNLA-RTIEPLYRTIQLS 1714

Query: 301  SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            ++ R+ G  + +  + TGR +      Q + +       L   ++     E         
Sbjct: 1715 AESRVHG--RSHCFTSTGRITMHEPNLQTVVKDFTVPAPLAGGMR-----ERRTTDEEEH 1767

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF------------ANGEDI 408
              C  +       + L+ AD   +E  +L  ++ +   + A                +D+
Sbjct: 1768 FSCRSTFACNDTTRVLLSADFCQLELCILTHLSQDRRLLAALDGSAVADGAGSRRKPQDV 1827

Query: 409  YVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFS 463
            + +  A+        +VS E R   K +   + Y  GA+                ++QF 
Sbjct: 1828 FRSLAARWHQLGDASEVSDELRTRTKAIVYGVIYGMGARAMAAELQMEEESARSLMEQFH 1887

Query: 464  QNVKSTSTFEDWEQAESHHL-------WMQDQYPEFA-----------------VKDKLI 499
            ++      +++     +  L         +   P                    V   + 
Sbjct: 1888 RSYPDIRRYQERVIRLTRQLGYIETLTGRRRYLPAIGQAATADPAARAEAERQAVCTTIQ 1947

Query: 500  GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR-----RVANVPRLVMRRH 554
            G+A +++K A     + + +    L  G   +V              ++  V +++    
Sbjct: 1948 GSAADILKNAIVRMERNLRKYADVLDVGAIQLVLHLHDELVYELPRAQLPKVAKILRSSM 2007

Query: 555  KRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +    + +P   +L   D  G    LN+
Sbjct: 2008 ENCAKLSVPLRVKLKAGDSWGTMRELNS 2035



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 48/168 (28%), Gaps = 41/168 (24%)

Query: 521  WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL------VYSDVK 574
            W  L +      +      A     +  +  R    ++ +   S+R L       Y D++
Sbjct: 1835 WHQLGDASEVSDELRTRTKAIVYGVIYGMGARAMAAELQMEEESARSLMEQFHRSYPDIR 1894

Query: 575  GDCSYLNTATSQLMRERTYGGK------------------------LTENIVQAISRDIL 610
                 +   T QL    T  G+                             +Q  + DIL
Sbjct: 1895 RYQERVIRLTRQLGYIETLTGRRRYLPAIGQAATADPAARAEAERQAVCTTIQGSAADIL 1954

Query: 611  CEGMKNATKN-----------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
               +    +N              +VL +HDE+V E P      V  +
Sbjct: 1955 KNAIVRMERNLRKYADVLDVGAIQLVLHLHDELVYELPRAQLPKVAKI 2002


>gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1]
 gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1]
          Length = 876

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 83/559 (14%), Positives = 172/559 (30%), Gaps = 110/559 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR- 62
           L  DIE  S   L       Y          +   +      D T+  A    L Q L+ 
Sbjct: 182 LTCDIEGFS---LKH-----YDAGIGTITFCWDQHNGIAFEVDNTQTKAEDHVLRQALKT 233

Query: 63  ------DETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLARTN 103
                       + HN  ++  +    L             G+D+  + W CT ++    
Sbjct: 234 FFYRYRATGRRTIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENWECTQLITYLA 293

Query: 104 -----GLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSP-------PYDCTR 149
                G    LK        N++    +      L        +D          +  T 
Sbjct: 294 TNSCAGNELGLKAQAQEFAGNYAVEDIQDITQIELAKLLEYNLVDGLSTWYVYNKHYQTM 353

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------------DGERDLWLLDQTIND 196
            N  Q ++++    K  V+   ++    +P++             + E ++W + QT   
Sbjct: 354 IND-QQYEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNNQLGAESEHNVWKMMQTKIV 412

Query: 197 RGY--RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF--LITGID 252
           +G+  +++ D + K  E +  +     +        +  +      L+  L+     G+ 
Sbjct: 413 QGFVYQLEEDALKKKNEKLKTKVVTRADLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGLP 472

Query: 253 LVDMSE--------GTLKSILSHSNITQLAKDL---ILNRLASSGSAILKLNTLSEAVSS 301
           ++D+++         TL+ +L+ +   +  + L   +  + ++   +      L      
Sbjct: 473 VLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPGP 532

Query: 302 DGRLRGTLQFY--GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           DG        +  G + +GR S      QN+P                            
Sbjct: 533 DG-WHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------------------SAGGPLKSR 573

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
            +  ++ C  A  G   V  D   +E R+ A    +  K+K + +G D +       F  
Sbjct: 574 LAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGD 633

Query: 420 PIDKVS--------------KEQRAIGKVMELALGYQGGAKVFK---TMASHCGLDLQ-Q 461
            +  +               K  R   K    AL YQG           +     D++ +
Sbjct: 634 QMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNCGFSKEKAQDIENK 693

Query: 462 FSQNVKSTSTFEDWEQAES 480
           + +  K +  F + +  ++
Sbjct: 694 YKKMYKVSIEFVEKKLEQA 712


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 11/195 (5%)

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQ 428
           A N   LV  D +  EAR+   +AG++  I AF +   D++  T +  F  P+++V+K+ 
Sbjct: 31  ARNHDTLVFTDYSAQEARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDL 90

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   L Y    +   + A    + +++  Q       FED+   +     + D 
Sbjct: 91  RTRAKAVTFGLMYG---EDPNSFAGKNNMPIEESEQL------FEDYYAGKPKIKELIDI 141

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK-DLTEGFACVVQEGGSISARRVANVP 547
               A +D  I       ++          +     L +    +VQ G +   ++     
Sbjct: 142 AQSSATRDGYIDVPGSGFRRNLEDVWSADFKTKNGALRQALNTMVQGGSAYLTQKALITI 201

Query: 548 RLVMRRHKRDVHIVL 562
               R +  D +I++
Sbjct: 202 NQYFRAYDIDAYIMV 216


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score = 97.5 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 104/335 (31%), Gaps = 56/335 (16%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER---KKLDE 222
           D  AT     RL  L   E    L    +   G         +L E     R     L  
Sbjct: 125 DQRATIGTDARLDLLIAAESAGALSAAEMTHTGLPFSTQKHRELLEERLGPRPTGYDLPA 184

Query: 223 DIVKLTDGIIR------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            + +L   I        +   +  +    F   GI+L    +  L+  + H  +  L + 
Sbjct: 185 RMQELAAQISEVFGRTVNPSSSVEITE-AFGRQGIELPSTRKWFLQE-IDHPAVPLLLRH 242

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
             L +L S+         +   V  D R R      G   +GRW+        +P+    
Sbjct: 243 RELAKLYSTNG----WQWMDSWVRGD-RFRPIYVPGGVV-SGRWASRGGGALQIPKT--- 293

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +RS ++A  G   VVAD   +E R+LA ++G+ 
Sbjct: 294 ---------------------------MRSSVVADPGHVFVVADAGQLEPRILAAMSGDR 326

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + A A  +D+Y    A+AF           RA  KV  L + Y   A   K +     
Sbjct: 327 RMMAA-AGDDDLYALVGAEAFG--------GDRAKAKVAILGVLYGATAGEAKALLILLR 377

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                  + V+  +   +  +     L      P 
Sbjct: 378 KRFPVAVEYVEQAAKAGERGEVVKSLLGRACPPPS 412


>gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 572

 Score = 97.5 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 116/383 (30%), Gaps = 67/383 (17%)

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A  ++A     +     V        RL  L   E    ++   +   G     DL  ++
Sbjct: 145 AEELRAEYAAQQAALATVGQEENQRSRLQLLLAAESAGAMIAAEMQHAGVPWREDLHEQI 204

Query: 210 QEL----------IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
                           + + L++++ +L +    +      L   L    GI++    + 
Sbjct: 205 LAEHLGPRPPAGHRPAKLEVLNQELRRLLNSPTLNPDSPQDLMRALH-RNGIEVKTTRKW 263

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
            L+   SH  I  L     L+RL ++        +  +A  + GR R      G   +GR
Sbjct: 264 ELRES-SHPAIAPLLAYKQLSRLHTANGW-----SWLDAWVAGGRFRPEYVVGGVV-SGR 316

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           W+        +PR                               +R  + A  G KL+VA
Sbjct: 317 WASRGGGALQIPRN------------------------------IRGAVHADPGHKLIVA 346

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + +E RVL  +A +    +A  + +D+Y    AK F           RA  KV  L  
Sbjct: 347 DASQLEPRVLVALAQDSSMAEAARD-QDLYAGIAAKGFG--------GDRAKAKVALLGA 397

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKS----------TSTFEDWEQAESHHLWMQDQY 489
            Y   +     +         +    V+            +T            W Q Q 
Sbjct: 398 MYGATSGEAGRLMPQLARTYPRAVDYVEQAARAGESGGTVTTRLGRSSPPPSERWFQSQR 457

Query: 490 PEFAVKDKLIGTACELVKKAWRA 512
              A + +   +      +  R 
Sbjct: 458 SASAEEQRRAESIARSRGRFTRN 480


>gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 563

 Score = 97.5 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 110/360 (30%), Gaps = 57/360 (15%)

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER-- 217
            ++    V    +  +RL  L   E    ++   +   G     +L  ++   +   R  
Sbjct: 146 QQHAVSQVTTEHQQRQRLQLLLAAESACAIIAVEMQHAGVPWREELHQQILADVLGPRPP 205

Query: 218 --------KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
                   + L  ++  + +    +      L   L    GI++    +  L+    H  
Sbjct: 206 LGHRPPALEALCAELRNILNSPSLNPDSPQDLMRALH-RNGIEVKSTRQWELQES-KHPA 263

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           I  L     L+RL ++      L+        DGR        G   +GRW+        
Sbjct: 264 IQPLLAYKKLSRLHTAN-GWSWLDAWVR----DGRFHPEYVVGGVV-SGRWASRGGGALQ 317

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +PR                               +R+ + A  G KL+VAD + +E RVL
Sbjct: 318 IPRN------------------------------IRAAVHADPGHKLIVADASQLEPRVL 347

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
             +A +    +A  + +D+Y    A+ F           RA  K+  L   Y        
Sbjct: 348 VALAQDTKMAEAARD-KDLYAGIAAQGFG--------GDRAKAKIALLGAVYGATTGESG 398

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +         +    V+  +   +  +  +  L      P          T  E  ++A
Sbjct: 399 RLMPQLTRTYPRAVGFVEQAAREGEAGRTVTTRLGRSSPPPSAGWLRSQQSTTAEEQRRA 458


>gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 676

 Score = 97.1 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 89/537 (16%), Positives = 161/537 (29%), Gaps = 111/537 (20%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLART 102
           + +    S  P   LQ L D  V  V H++  +      +LG++     W  C +  AR 
Sbjct: 109 VINVANPSIRPK--LQSLFDLPVTYVTHDAKPDLHCIW-SLGLNESRYWWDTCIAEKARY 165

Query: 103 NGLPS---SLKNACLALNFSEHLTKMEEGKAL-------------------IARFCKGSI 140
            G  +   S ++           T  E+                                
Sbjct: 166 LGQHNNAKSTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSGLASSAKLLMGSEQ 225

Query: 141 DSPPYDC-----TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
           D P +       T    +   +L+    +  +     + + LI +   E    + +  I 
Sbjct: 226 DCPSFSALQIEQTSQLSITVAKLYLTQSQSCL--MFGIHQHLISI---EMPWVVTNAAIE 280

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G+++  D   K ++++    +KL      L    + +    +  +  LF   G+  + 
Sbjct: 281 WNGFKVCRD---KCRQILEACERKLSLYSQGLAQLGMTNPNSQHQ-KQVLFASLGL--LH 334

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGS---AILKLNTL-SEAVSSDGRLRGTLQF 311
             +           +++           +  +   ++ K   L    V SDGR+    + 
Sbjct: 335 HFKDGDDYSFQREMLSKNYALHPAVAFLAKYTHIDSVYKDVILQPGIVGSDGRVHSEQKQ 394

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A+ TGR +        LP                                +R  ++A 
Sbjct: 395 LTAA-TGRQATVAPNILGLP------------------------------AVLRPLVVAQ 423

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID--------- 422
           +G  +   DLA IE  + A + G+   +K +  G D+Y     + F   ++         
Sbjct: 424 DGYVIGEVDLAQIEVAIAAGVYGDSNLVKMYNQG-DLYTAMAQEFFCEELEPEYSTCDSA 482

Query: 423 ---KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
              +   E+RAI K   L L Y     G AK      +     + +F           D 
Sbjct: 483 VFKEKYPEKRAIMKQCTLGLIYGITSFGIAKKLNISVNKATELMDKFLSMFPELQKAIDK 542

Query: 476 -----------EQAESHHLWMQDQYPE------FAVKDKLIGTACELVKKAWRAKHQ 515
                        A   H + Q           + V   + GTA  L K A    HQ
Sbjct: 543 MPQYGALRGHVSTATGLHRYRQLDAKRGHTEKNWMVNMPVQGTAAALFKAAGNRLHQ 599


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 92/277 (33%), Gaps = 48/277 (17%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              ++L   I ++    + +   +  +    F   GI+L    +  L+  + H  +  L 
Sbjct: 184 ARMQELAAQISEVFGRTV-NPSSSVEITE-AFGRQGIELPSTRKWFLQE-IDHPAVPLLL 240

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L +L S+         +   V  D R R      G   +GRW+        +P+  
Sbjct: 241 RHRELAKLYSTNG----WQWMDSWVRGD-RFRPIYVPGGVV-SGRWASRGGGALQIPKT- 293

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +RS ++A  G   VVAD   +E R+LA ++G
Sbjct: 294 -----------------------------MRSSVVADPGHVFVVADAGQLEPRILAAMSG 324

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + A A  +D+Y    A+AF           RA  KV  L + Y   A   K +   
Sbjct: 325 DRRMMAA-AGDDDLYALVGAEAFG--------GDRAKAKVAILGVLYGATAGEAKALLVL 375

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                    + V+  +   +  +     L      P 
Sbjct: 376 LRKRFPVAVEYVEQAAKAGERGEVVKSLLGRACPPPS 412


>gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5]
          Length = 600

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 90/547 (16%), Positives = 159/547 (29%), Gaps = 113/547 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQY--LRD 63
           DIET     +             I    ++W     +      +    P DL +   +  
Sbjct: 40  DIET-KGIDI-----------FTIRCITFSWHGSDGRTHGILLDMGRRPEDLAEAKRIAQ 87

Query: 64  ETVMCVAHNSLFERILFKKT--LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
                V HNS F+ +       +G +   + W  T VL+R      +  +  +       
Sbjct: 88  RAEHLVFHNSPFDVVPLVHFGVMGREEVFRVW-DTIVLSRM-----AFPDVMVPKKLEAM 141

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY--------CKRDVEATREL 173
             KM     L                +       W   G+            D   T  L
Sbjct: 142 AVKMRVSDEL------PDGLKMMIKASGLKSKDGWYAHGDIDRPAYRHGAIADTVVTLRL 195

Query: 174 FKRLIP---------------LSDGERDLWLLDQTI---------NDRGYRIDLDLVLKL 209
              LI                L   +    L+D+ +         + RG R+DLD +   
Sbjct: 196 LPVLIDAIHRKLTDHPFTDRGLQTTDEAQALVDREMLVNRVMLWRSARGIRVDLDYMHTY 255

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSH 267
           ++ +A +  + + ++                L   L  + G+       + G L S    
Sbjct: 256 RDSVADKVARAELELKNYGVD----PGNGAQLVAKLDEVGGLPENWPRTATGKLASNKDA 311

Query: 268 SNITQLAKDLILNRLASSGSAI-LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                     + +R+ +  + I   L+ ++      GR   ++   GAS TGR S     
Sbjct: 312 MEKLGDHPLALAHRIYADETKIGQYLDAVASRAEVTGRCHPSVAILGASATGRTSYSDPP 371

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            Q      R   +                                +G+ L+  D + IE 
Sbjct: 372 LQQFSADARPVLV-------------------------------DDGQGLMSVDWSAIEP 400

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
            V+A +AG+   +  F  G D+Y          PI + +   R   KV+ L   Y  G  
Sbjct: 401 VVVANMAGDQEFLAPFVAGADLYE---------PIQRAAGIDRKRAKVVLLGTLYGEGKG 451

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
               MA+      +Q  Q  +    F    + E     ++    +F +     G   ++ 
Sbjct: 452 ---KMAADLKCSYEQAVQIQRGM--FSAMPKVERFLETVKSVAAQFGIIVTADGRILDVP 506

Query: 507 KKAWRAK 513
           K      
Sbjct: 507 KFNGEVA 513


>gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 664

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 114/705 (16%), Positives = 212/705 (30%), Gaps = 158/705 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWA-YAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-SDL 57
            ++ ID ETR    L K+G  A     + IT  ++A +D P             +P   +
Sbjct: 31  KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89

Query: 58  LQYLRDETVMC----VAHNSLFERILFKKTLGIDIPSKRWICTSVLA--RTNGLPSSLKN 111
           L YLR +  +     V  N  ++        GI+    R+     +A      L  S   
Sbjct: 90  LAYLRAQAKVFTGDLVGANLPYDLDFLAGD-GIEFERVRYFRDIQIADPLICELHDSYSM 148

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE--- 168
             +A  +     K E          + +      D  +   +   +  G+Y + D     
Sbjct: 149 QAIAERWG-FYGKDEA-------LLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRLPL 200

Query: 169 -----ATRELFKR-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                  RE+ ++ L  + + E  L  +   +  RG RID D +  ++    ++  +   
Sbjct: 201 NILRRQEREIDEQDLWGVYNLESKLLPILTRLRRRGVRIDCDRLDMIERWALEKETEALA 260

Query: 223 DIVKLTDGIIRSSRQTYALRMYL--FLITGIDLVDMSEGT------LKSILSHSNITQLA 274
            +  +T   I +    +   +        GI L   S+G       L   + H     L 
Sbjct: 261 QVRSITGHRI-AVGDVWKPEVIAPALEHIGIKLNKTSQGKPSIDKELLGSIDHPVAGLLE 319

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-----------YGASRTGRWSGC 323
           +   +N+L ++ ++ ++ + +       GRL GT                 +  GR S  
Sbjct: 320 RARKVNKLRTTFASSVR-DHMVN-----GRLHGTFNQLRRQKDDESDGTAGAAYGRLSSE 373

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               Q  P +                           +   RS  +   G+     D + 
Sbjct: 374 HPNLQQQPAR------------------------DEFAMMWRSIYLPEEGQHWASNDYSQ 409

Query: 384 IEARVL--------------AWIAGEDWKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKE 427
            E R+               AW++  + +   + N    D +              ++  
Sbjct: 410 QEPRMAVHYACLAKDLIGHKAWLSAIEAR-DKYRNDPNTDNHQMMA---------DMAGI 459

Query: 428 QRAIGKVMELALGYQ-GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +R   K + L L Y  GGAK+ + +     + ++     +   ++ E             
Sbjct: 460 KRKDAKEIYLGLSYGMGGAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLV-------- 511

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
               E A + +  G   + +   +  K   + +L K        V               
Sbjct: 512 ---AEGARRFEAAGPEGQALLDTFDQKVPFIKKLAKACEARAKAVG-------------- 554

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                       +I   S RR  +   K                  +  K    ++Q  S
Sbjct: 555 ------------YITTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSS 589

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            D     M    + G DI++ VHDEI     D           +M
Sbjct: 590 ADQTKMAMVACAEAGLDIIIQVHDEIAFSVHDMK--EAAEAAHIM 632


>gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6]
          Length = 664

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 114/705 (16%), Positives = 213/705 (30%), Gaps = 158/705 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWA-YAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-SDL 57
            ++ ID ETR    L K+G  A     + IT  ++A +D P             +P   +
Sbjct: 31  KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89

Query: 58  LQYLRDETVMC----VAHNSLFERILFKKTLGIDIPSKRWICTSVLA--RTNGLPSSLKN 111
           L YLR +  +     V  N  ++        GI+    R+     +A      L  S   
Sbjct: 90  LAYLRAQAKVFTGDLVGANLPYDLDFLAGD-GIEFERVRYFRDIQIADPLICELHDSYSM 148

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE--- 168
             +A  +  H  K E          + +      D  +   +   +  G+Y + D     
Sbjct: 149 QAIAERWGFH-GKDEA-------LLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRLPL 200

Query: 169 -----ATRELFKR-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                  RE+ ++ L  + + E  L  +   +  RG RID D +  ++    ++  +   
Sbjct: 201 NILRRQEREIDEQDLWGVYNLESKLLPILTGLRRRGVRIDCDRLDMIERWALEKETEALA 260

Query: 223 DIVKLTDGIIRSSRQTYALRMYL--FLITGIDLVDMSEGT------LKSILSHSNITQLA 274
            +  +T   I +    +   +        GI L   S+G       L   + H     L 
Sbjct: 261 QVRSITGHRI-AVGDVWKPEVIAPALEHIGIKLNKTSQGKPNIDKELLGSIDHPVADLLE 319

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-----------YGASRTGRWSGC 323
           +   +N+L ++ ++ ++ + +       GRL GT                 +  GR S  
Sbjct: 320 RARKVNKLRTTFASSVR-DHMVN-----GRLHGTFNQLRRQKDDESDGTAGAAYGRLSSE 373

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               Q  P +                           +   R+  +   G+     D + 
Sbjct: 374 HPNLQQQPAR------------------------DEFAMMWRAIYLPEEGQHWASNDYSQ 409

Query: 384 IEARVL--------------AWIAGEDWKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKE 427
            E R+               AW++  + +   + N    D +              ++  
Sbjct: 410 QEPRMAVHYACLAKDLIGHQAWLSAIEAR-DKYRNDPNTDNHQMMA---------DMAGI 459

Query: 428 QRAIGKVMELALGYQ-GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +R   K + L L Y  GGAK+ + +     + ++     +   ++ E             
Sbjct: 460 KRKDAKEIYLGLSYGMGGAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLV-------- 511

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
               E A + +  G   + +   +  K   + +L K        V               
Sbjct: 512 ---AEGARRFEAAGPEGQALLDTFDHKVPFIKKLAKACEARAKAVG-------------- 554

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                       +I   S RR  +   K                  +  K    ++Q  S
Sbjct: 555 ------------YITTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSS 589

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            D     M    + G DI++ VHDEI     D           +M
Sbjct: 590 ADQTKMAMVACAEAGLDIIIQVHDEIAFSVHDMK--EAAEAAHIM 632


>gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
 gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
          Length = 766

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 112/413 (27%), Gaps = 89/413 (21%)

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
            G+  + +   + K  ++   +  +A       L  +   +   + L  +VS +GRL   
Sbjct: 407 NGLPSISLKSLSNKGAIA---LPGIAAWR---DLCDARRTLASCDDLIASVSPNGRLHPL 460

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
             +     TGR +                                          +RS +
Sbjct: 461 FGYDTV--TGRLTAKRP------------------------------ASMAMDQRLRSAV 488

Query: 369 IASNGKKLVVADLAGIEARVLAWIA-------GEDWKI-KAFANGEDIYVTTYAKAFNTP 420
            A  G  ++ AD + IE R+ A  A       G    +  AF  G D ++TT  ++    
Sbjct: 489 TAPEGSVIISADYSQIELRIAACFAEKMRAGTGLPGMLATAFRTGVDPHLTTALQS---- 544

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
                   R  G +          A +           L       K+ +    +   +S
Sbjct: 545 -------VRQRGDIDFTGNAAAYIAGLCDEERCELKSRLFVERDTAKAQNFGLLYGMKDS 597

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                  +Y   A          +  + AW   +  +  L       F+   +E   + A
Sbjct: 598 SFW----EYGRLAYGLTWTFEEAQAARDAWFKMYPEIALLHDSYQSTFSAAAKETLFLKA 653

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                            +     S R++  +      SY                     
Sbjct: 654 HDGVFQTTTSRVVSGATL-----SGRKVTATSPFLLLSYA-------------------- 688

Query: 601 IVQAISRDILCEGMKNATKNGYD-IVLTVHDEIVSETPDT-PYFSVGTLCSLM 651
             Q    DI+   + +        +V  VHDE+V   P++        +   M
Sbjct: 689 -CQGTGADIIISAIASMDHGTRRHLVNVVHDELVLCVPESCSQREAAEVRRAM 740


>gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 25/150 (16%)

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450
                +AF++  DI+  T ++ F+TPID+V+K QR+  K +   + Y     G ++    
Sbjct: 2   IKKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNI 61

Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489
                   ++ +         +                         +  S +  ++   
Sbjct: 62  PRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRSFG 121

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              A+   + G+A +++K A    ++ + +
Sbjct: 122 ERVALNTPIQGSAADIIKFAMINSYENLKK 151



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           R++G ++  N  +Q  + DI+   M          K    IVL +HDEI+ E        
Sbjct: 118 RSFGERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLTK 177

Query: 644 VGTL 647
              +
Sbjct: 178 AKEI 181


>gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5]
 gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5]
          Length = 633

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 93/633 (14%), Positives = 176/633 (27%), Gaps = 102/633 (16%)

Query: 14  QPLPKVGVWAYAEQAVIT------LCAYAW--DDEPVKLWDRTEQSAMPSDLLQYLRDET 65
             L K   WAY  +          +  ++    D     +D  EQ      L++      
Sbjct: 15  IDLTKYEAWAYDTECTGLKYKVDKVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADSYK 74

Query: 66  VMCVAHNSLFE-RILFKKTLGIDIPSKRWI-----CTSVLARTNGLPSSLKNACLALNFS 119
              V HN+ F+ R+     + + +           C +    T    +  K    +L++ 
Sbjct: 75  GTIVCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSLDYL 134

Query: 120 EHL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K  E    +A    G                   L  +Y   D E T EL+ 
Sbjct: 135 AKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSG--LVRKYACPDAELTLELWL 192

Query: 176 R---------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                     L  +   ER +         RG R+DL+   +    +    ++    + +
Sbjct: 193 EQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQ 252

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR----- 281
           L      +      +R          +    +GT+    +  N    A  L   +     
Sbjct: 253 LAGREF-NPNSPKQVREVFGAKEERGVWTSRDGTVLERTATGNPCLDADALRAMKDPLAA 311

Query: 282 --LASSGSAILKLNTLSEAVSSD---GRLRGTLQFY----GASRTGRWSGCVFQPQNLPR 332
             L    +   K   L++ V      GR+   +       G + TGR S      Q +P 
Sbjct: 312 AVLELRSNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPS 371

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           + +                         +  ++   +   G+  + +D+A  E R+ A +
Sbjct: 372 RNKR-----------------------IAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHL 408

Query: 393 --AGEDWKIKAFANG--EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
             A      +A+A     D++          P +     Q A  K M L + +  G    
Sbjct: 409 VAAYNPAIARAYAENPELDLHQWVG-DLMGIPRNASYSGQ-ANAKQMNLGMIFNRGDGAV 466

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                                        ++ K  G   + V  
Sbjct: 467 ADSLG-------------------------MPWEWCEFTDKKGDLIRYKKAGPEAKAVIA 501

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR-RVANVPRLVMRRHKRDVHIVLPSSRR 567
           A+  + QGV  L    T       + G   +A  R    P          + I   ++  
Sbjct: 502 AYHTQIQGVKTL---ATRAQKIAEERGWIQTAHGRRLRFPNGYKSYKASGILIQATAADE 558

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
              + ++ + +  +  +  L    +Y   + EN
Sbjct: 559 NKENWLRIEDALGSDGSMILNTHDSYSMSVDEN 591


>gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 132/480 (27%), Gaps = 71/480 (14%)

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED----I 224
           AT  +F  L  +   E  +  L + ++  G  ++ +++  +   + Q+ K L E     +
Sbjct: 390 ATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVADLEQQIKALIEKGNVAL 449

Query: 225 VKLTDGIIRS------------------------------SRQTYALRMYLFLIT----- 249
             +      S                                Q   L  YL         
Sbjct: 450 QAMATASNESIDMETVDAWNLIKTLQSQFGGPWTFAKGNVEEQMQQLGAYLDEKQSCADS 509

Query: 250 -----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
                 + L +  E     +   +    +   LI      + +     ++    V +  R
Sbjct: 510 NVARIWLALHERREFKRSLMEGFTKGASMHARLIAIPEEMASTEGGG-HSNPHHVEAQYR 568

Query: 305 ----LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
               +      + A+ T R        Q + +          +                 
Sbjct: 569 LFFSVHPKWSVHHAT-TSRLFCSRPCLQTVAKNPPISRTAPSS-------SPPVTIFSNP 620

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R       G  LV  D   IE RV+A ++G+   ++   +G D+      +    P
Sbjct: 621 KWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGSDVLAEMALRVMQLP 680

Query: 421 -IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK--STSTFEDWEQ 477
            +  V+   R   KV+   L Y  G +           ++  F++     +      + Q
Sbjct: 681 RLTDVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKEITPFAEQPPLSARQFLRSFNQ 740

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                          A  +K   T   L   +         Q+        A  +Q G +
Sbjct: 741 CYPAVQGFLKSTRLRAFHEKRCATLNGLRDLSGEPDGNRRKQV------AVALAIQGGAA 794

Query: 538 ISARRVANVPRLVMRRHKRDV-----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
           +                   +      +VL     LVY+   G  S++     Q++ ++ 
Sbjct: 795 VILHHAMVEVHEKRHELVPFLPAAAAALVLSVHDELVYAVPDGAVSFVAPKIKQILEQQA 854


>gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
 gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
          Length = 1489

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/462 (14%), Positives = 133/462 (28%), Gaps = 87/462 (18%)

Query: 170  TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--- 226
              E    +  L   E         +       D   + +    +    KKL+E   K   
Sbjct: 1004 ECEAKDLIRALIRVEMPFVAPIVAMETVKVPFDPRRLKEEIAAMDDRLKKLEEYAKKQKW 1063

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD---------- 276
            L      + R+ +    YL      + + ++      +    +    AK+          
Sbjct: 1064 LDPLHPANLRRAFTDNAYLVKCL-YEHLKLTPPAGSELAFTKDWVSNAKECTVSTKTTYE 1122

Query: 277  -------LILNRLASSGSAILKLNTLSEAV------SSDGRLRGTLQFYGASRTGRWSGC 323
                    +   L     ++ K  T ++ +      S D R+R ++        GR +  
Sbjct: 1123 KVHEQSGHMFPLLILEHRSVFKRLTFADVLLGMYGESMDSRIRYSI-HQTNHDCGRLTHI 1181

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                 ++    +  +                D L      VRS       +  +  D + 
Sbjct: 1182 EPNFHSMAHDMKCVDAF--------------DGLDAPVISVRSAFTPPADRVFLRVDYSH 1227

Query: 384  IEARVLAWIAGEDWKIKAFAN------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            +E RV+A  +G+   I    N       +D +     K    P++ VS ++R   K +  
Sbjct: 1228 LELRVMAHFSGDQTLIALLQNPEPVNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLVY 1287

Query: 438  ALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474
             + Y  G K      +       + + +    + +   + D                   
Sbjct: 1288 GILYGSGVKRLARELRLSDEKAKILVDELKSMLPTLMNWRDDVVARAIEEKPIPRVTTIS 1347

Query: 475  -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA-------WRAKH-QGVLQLW 521
                 + +  S     +      AV     G+A ++ K A        RAKH     QL 
Sbjct: 1348 SRHRYFPELLSRSGDERSAAERQAVNTVCQGSAADIFKTAVVLVMETLRAKHLLDRCQLV 1407

Query: 522  KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
              + +     V    + +A R+    R  M       ++ +P
Sbjct: 1408 LTVHDEAVFEVNASVAKAAARIV---RNTMESVAGVFNLSVP 1446


>gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
 gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
          Length = 1312

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/398 (14%), Positives = 124/398 (31%), Gaps = 69/398 (17%)

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            +  E K ++    K      +       LR  LF    + L ++  G   +  +  N+  
Sbjct: 775  LEDEIKDVERQCYKKAGHPFQI-TSHIQLRQVLFDE--LKLDELCPGQKLARTNVQNLKS 831

Query: 273  LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             ++ ++          +  L+ L E V                            QN+P+
Sbjct: 832  TSEMVL--------HKLKDLHPLPELV---------------------LTHRQNIQNIPK 862

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            Q            ++    T++      +  +R    +  G   + AD   IE R+LA +
Sbjct: 863  QPLQVHKDANG--SVVNESTVSSTAPATTLWMREPFFSHEGWSFIAADFQSIELRILAHL 920

Query: 393  AGEDWKIKAFANGE--DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            + +   +K F +    DI+V    +     ++ V    R   K +  ++ Y  GA+    
Sbjct: 921  SQDAVLLKVFNDAGSTDIFVQLTCEWLGLNLEDVKTGDRERTKRIVYSVIYGVGAERLAE 980

Query: 451  MASHCGLDLQQFSQ----NVKSTSTFEDWEQAE---------------------SHHLWM 485
              +    + + F++      K  +TF     +E                     S +  +
Sbjct: 981  TLNDTKENAKAFTKSFLVKFKGVNTFAQRCISECQRHGHVKTIFHRHRLISNISSQNFHV 1040

Query: 486  QDQYPEFAVKDKLIGTACELVKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSI 538
            +      AV   + G+A ++ K A          ++    +L   + +     V +    
Sbjct: 1041 RSHAERQAVNFVIQGSAADICKLAMIHIMTVLSERNTVRARLLVQIHDELLFEVHDEDIN 1100

Query: 539  SAR-RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
              + + + V    +               R  YS V+G
Sbjct: 1101 EVKAKKSCVCLSELESVWGSFWRDGQWGFRCCYSLVRG 1138


>gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi]
 gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi]
          Length = 1069

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 141/418 (33%), Gaps = 58/418 (13%)

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----------- 252
           D +  L  L  QE      +   +++ I         +R Y   I  +            
Sbjct: 599 DELNSLASLDIQESNGFTSNNHDISEKINNEMNSKIKIRQYSNTINEMKRNKSLQTNNKM 658

Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
               + ++ +          NI Q+  ++ L R  S       +  L + +     ++  
Sbjct: 659 LKIIIDELEKNNYVGEKEKENIKQIISNIKLYR-ESKKLFQNYIENLPKHIQKNTNKIHC 717

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                GAS TGR S      QN+  + R    L               P+ + +  V++ 
Sbjct: 718 NFNQLGAS-TGRLSCDQPNLQNIHSKFRCTISLKND---------DIKPISVKTKHVKNK 767

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +    + L+  D   +E  V+A+++ +   +K   N  D++V T    FNT  + V+KE
Sbjct: 768 SV---NQNLLTFDYKQMELFVMAYLSFDSQLLKMLNNS-DVFVETAKVLFNT--NDVTKE 821

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            R + K +   + Y     G AK      +     +  F     +   F   ++    ++
Sbjct: 822 LRRMTKTVIYGILYGQSENGLAKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNI 881

Query: 484 WMQ--------------DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  ++   + G A +++K A  + H+ +L  + +  +   
Sbjct: 882 NSVYTLIGRKRLVDPTIKNKYRISMNTPIQGCAADIMKFALLSCHK-ILSYFDNPNQDID 940

Query: 530 CVVQEGGS-----ISARRVANVPRLVMRRHKRDVHIVLPSSRRLV-YSDVKGDCSYLN 581
             ++            +      +L+++ H   +     +  +++   +   + S+LN
Sbjct: 941 TFLKMNNINISLLKKYKNYIKSTKLILQIHDELLFQCDENGTKIIQLLNPVLENSFLN 998


>gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2]
 gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2]
          Length = 633

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 93/633 (14%), Positives = 176/633 (27%), Gaps = 102/633 (16%)

Query: 14  QPLPKVGVWAYAEQAVIT------LCAYAW--DDEPVKLWDRTEQSAMPSDLLQYLRDET 65
             L K   WAY  +          +  ++    D     +D  EQ      L++      
Sbjct: 15  IDLTKYEAWAYDTECTGLKYKVDKVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADSYK 74

Query: 66  VMCVAHNSLFE-RILFKKTLGIDIPSKRWI-----CTSVLARTNGLPSSLKNACLALNFS 119
              V HN+ F+ R+     + + +           C +    T    +  K    +L++ 
Sbjct: 75  GTIVCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSLDYL 134

Query: 120 EHL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K  E    +A    G                   L  +Y   D E T EL+ 
Sbjct: 135 AKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSG--LVRKYACPDAELTLELWL 192

Query: 176 R---------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                     L  +   ER +         RG R+DL+   +    +    ++    + +
Sbjct: 193 EQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQ 252

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR----- 281
           L      +      +R          +    +GT+    +  N    A  L   +     
Sbjct: 253 LAGREF-NPNSPKQVREVFGAKEERGVWTSRDGTILERTATGNPCLDADALRAMKDPLAA 311

Query: 282 --LASSGSAILKLNTLSEAVSSD---GRLRGTLQFY----GASRTGRWSGCVFQPQNLPR 332
             L    +   K   L++ V      GR+   +       G + TGR S      Q +P 
Sbjct: 312 AVLELRSNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPS 371

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           + +                         +  ++   +   G+  + +D+A  E R+ A +
Sbjct: 372 RNKR-----------------------IAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHL 408

Query: 393 --AGEDWKIKAFANG--EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
             A      +A+A     D++          P +     Q A  K M L + +  G    
Sbjct: 409 VAAYNPAIARAYAENPELDLHQWVG-DLMGIPRNASYSGQ-ANAKQMNLGMIFNRGDGAV 466

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                                        ++ K  G   + V  
Sbjct: 467 ADSLG-------------------------MPWEWCEFTDKKGDLIRYKKAGPEAKAVIA 501

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR-RVANVPRLVMRRHKRDVHIVLPSSRR 567
           A+  + QGV  L    T       + G   +A  R    P          + I   ++  
Sbjct: 502 AYHTQIQGVKTL---ATRAQKIAEERGWIQTAHGRRLRFPNGYKSYKASGILIQATAADE 558

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
              + ++ + +  +  +  L    +Y   + EN
Sbjct: 559 NKENWLRIEDALGSDGSMILNTHDSYSMSVDEN 591


>gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 558

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 125/384 (32%), Gaps = 74/384 (19%)

Query: 166 DVEATRELFK----------RLIPLSDGERDLWLLDQTINDRGY--------RIDLDLVL 207
           D  A  EL +          RL+ L   E    L+   +   G         RI  DL+ 
Sbjct: 135 DATAEFELQRAAVANSTGSGRLLRLLAAESAGALIAAEMRFAGLPWSAEAHDRILTDLLG 194

Query: 208 ---KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
               ++     + + L ++I +L D    +      L   L +  GI         LK  
Sbjct: 195 PRPTMESARPSKVQDLVDEIRELLDAPQLNPESPSDLLRALNVA-GIQTNSTRAWELKQ- 252

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L H  I+ L     L RL ++       N L   V  DGR R      G   TGRW+   
Sbjct: 253 LRHPVISPLLHYKKLARLLTANG----WNWLDSWVH-DGRFRPDYVPGGVV-TGRWATSG 306

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
                LP                                +R  +I   G KLVVAD + +
Sbjct: 307 GGALQLPH------------------------------LIRGAVIPDPGWKLVVADASQL 336

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA ++ +   ++A ++G D+Y              V  E RA  K+  L   Y   
Sbjct: 337 EPRILAAMSADRGMVEAGSSG-DLYEGI------VASGAV--ETRAHAKLAMLGAMYGAT 387

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 +               ++    ED  +A      +  Q    + + +  GT  E
Sbjct: 388 TGESGRLMPKL------ARAYPRAIQLVEDAARAGERGEIVSTQLGRSSPRGEDTGTYDE 441

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGF 528
            +  A RA  +   + W   T  F
Sbjct: 442 SLTPAERAALRERGRSWGRFTRNF 465


>gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
 gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
          Length = 927

 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 145/466 (31%), Gaps = 115/466 (24%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGI 251
           +   G   D            Q  + L+E+I +L  G   I SS +       +F   G+
Sbjct: 534 MFYTGISFDHSKCNSFITNTRQRIELLEEEIWRLAHGKFNIDSSNEVAN---VIFHRLGL 590

Query: 252 DLVDMSEGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DGR 304
              + S   +K      +   + Q+     +         I   +TL++ +        R
Sbjct: 591 IYPETSSCKMKQRHLPTNKLILEQMKNQHKIVGKILEYRHIQ--HTLTQCLLPLSIYSTR 648

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +   ++   A  TGR    V   QN+P++  +E +                         
Sbjct: 649 IHCRMEMCTA--TGRILTTVPNLQNVPKRVSTEGLSA----------------------- 683

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    AS+G+ L+ AD   +E RVLA ++ +   I+      D+        F     ++
Sbjct: 684 RQLFKASSGRILISADFKQLELRVLAHLSNDSKLIELICADRDL--------FG----EL 731

Query: 425 SKE---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           S E    R + K +   L Y  G    KT+A    + + +  + +   S F  +     +
Sbjct: 732 SVEWNFSRDVVKQLCYGLIYGMG---PKTLAELTKVKVAEAEKML--CSFFSMFPGLYLY 786

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                       V+  +  T   + K+       G  +  K    G      E  ++   
Sbjct: 787 LSNKGTYLYVTGVRSYINETKEHVSKEECVQTILGRKKFLKSGLTGEEKARVERVAV--- 843

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                    ++    ++        ++   +++              + + YG ++    
Sbjct: 844 ------NYTIQGTASEIF-------KVAIVEIE-------------SKIKAYGARI---- 873

Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                                  VLT+HDE + E P+     +  +
Sbjct: 874 -----------------------VLTIHDEFLVECPENRTPVISEI 896


>gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 141

 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  ID D +      IA     L++    L       +  T  L+  LF   G+ +
Sbjct: 1   MERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQPFNLA-STKQLQEILFDKLGLPV 59

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRG 307
           +  +     S  +   + +LA    L ++      + KL     + L + V+S  GR+  
Sbjct: 60  LQKTPKGAPST-NEEVLEELAYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHT 118

Query: 308 TLQFYGASRTGRWSGCVFQPQNLP 331
           +      + TGR S      QN+P
Sbjct: 119 SY-HQAVTATGRLSSSDPNLQNIP 141


>gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica]
          Length = 1902

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 119/364 (32%), Gaps = 55/364 (15%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR----SSRQT 238
             E +   +   +++ G         K  + ++    +L   + K     ++    +    
Sbjct: 1510 AEMEHAEIIFQMSENGMPFSESASEKTIKSLSTLMDRLAIKMKKHAPKGMKRDSLNFNHL 1569

Query: 239  YALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               R Y++           V +S       +      ++   +   R   + S +L    
Sbjct: 1570 LDQRKYVYDFLKCQPLEGKVSLSVSKEVLEVLEEKEPRIRNLIEFRRAQKAFSDLLTY-- 1627

Query: 295  LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
              +  S D R+  T      +RTGR S      Q        +       + +       
Sbjct: 1628 --KNASRDDRIYST--PVLINRTGRISMDNPSLQ------MVQNEFECCGKIIK------ 1671

Query: 355  DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                     VR+C  A+  K  +  D   +E RVLA ++G++    +F + ED +V+   
Sbjct: 1672 ---------VRNCFRANPKKIFISVDYRQLELRVLALLSGDEGLQASFIDHEDPFVSIGR 1722

Query: 415  KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470
            K      +++S  QR   K +   + Y  G    +               +F  +     
Sbjct: 1723 KW--LKRERISVAQRTQVKGLVYGVIYGMGNKTLSTTLGVSIEEAKNISSEFMSSYPGMQ 1780

Query: 471  TFE-DWEQAESHHLWMQ-------------DQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
             F  D +++ S +L+ +              +    AV  K+ G+A ++VK       + 
Sbjct: 1781 KFLVDVDKSASSNLYTETLIGRRRSFDNYTSRAARVAVNTKIQGSAADIVKIGTVRAARK 1840

Query: 517  VLQL 520
            + + 
Sbjct: 1841 IKET 1844


>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 308

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
               +  R  TYG KL ENIV+A SRD+L E M+        IV+ +HD  V + P    
Sbjct: 4   NTVKKWSRIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAPADR- 62

Query: 642 FSVGTLCSLMTK 653
            S+  +  +MT 
Sbjct: 63  -SLEKIVKIMTD 73


>gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 523

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 114/335 (34%), Gaps = 60/335 (17%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDI-VKLTDGIIRSSRQTYALRMYL-----FLITG 250
            G+ ID++L+ +   +    R     ++ + LTD     +R + A+  +L     FL+  
Sbjct: 157 EGHPIDVELLNRELAMADAHRVAAIAELGIDLTDSAT--ARGSKAIHAWLAPVGVFLVDA 214

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                +S      +         ++      + S  S + KL  +  A++ +GR   TL 
Sbjct: 215 KGAPSLSRDLYDRVSIPETDEAQSRWKKFREVRSVASRVGKLREIQRALN-NGRTHSTLY 273

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               +RTGR +      QN+ R                               +R  ++A
Sbjct: 274 VR-RARTGRGAVTGPALQNIHRG------------------------------LRPLLMA 302

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----K 426
             G+ LV  D + +E RV A ++ +   + A  +G D+Y     + +    D        
Sbjct: 303 PVGEVLVSLDFSQMEPRVSAGLSQDPDLLAALESG-DLYAELSRRIWGAEADDADGKPNP 361

Query: 427 EQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--- 479
             R   K + L + Y  G     +          + L            ++ W Q+E   
Sbjct: 362 LLRDRAKTLMLGIFYGEGKNALGRALGIEPKDAKVLLDSVWAAFPGLQAYDLWLQSEVRA 421

Query: 480 SHHLWMQDQYP--------EFAVKDKLIGTACELV 506
               + QD  P          A+ +++   + ++ 
Sbjct: 422 GRPAFTQDGRPVPLPKRGLHAALNNRVQAESADIF 456


>gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel]
 gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel]
          Length = 618

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 85/521 (16%), Positives = 154/521 (29%), Gaps = 89/521 (17%)

Query: 70  AHNSLFERI-LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
            HN+ F+   L    L       + + T +++R       +     AL+        ++G
Sbjct: 116 FHNAPFDTPPLLHNQLFDRPDINKIVDTLLISRFAVPDVMVPKNLTALSVRHLGLDDDKG 175

Query: 129 -----------KALIARFCKGSIDSPPYD--------CTRANHVQAWQLFGEYCKRDVEA 169
                      K   A F    I SP Y          T             +       
Sbjct: 176 GLERAFKAAGYKTQAAGFEGMDITSPVYRYGAMADTVATLRLEPLMRAKALHWATDHPFQ 235

Query: 170 TRELFKRLIPLSDGERDLWL---LDQTINDR---GYRIDLDLVLKLQELIAQERKKLDED 223
           T          ++ E+ LW    + + +  R   G  +D   + +  E +  +R     +
Sbjct: 236 TYGATTE----AEAEQLLWTQETVHRVMLRRSAVGLAVDRAYLDRYAEQVDVDRNLAVAE 291

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +     G+   S +   L  YL+    +        T K   +  ++  L   L   +  
Sbjct: 292 LA--AHGLEGGSGKAAKLVEYLYQRGELPEPWPRTPTKKLRATKDDLEGLDHPLAAAQRK 349

Query: 284 SSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
            +    +   L  +    S  GR    +   GAS TGR +    + Q  P   R      
Sbjct: 350 LATIEKVMGYLAKVDRQASVTGRCHPQVGVLGASATGRMAYGSPELQQFPADAR------ 403

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                     II  +G+ L   D + IE   +A +A +   +  
Sbjct: 404 -------------------------AIITDDGQGLTSIDWSQIEPVTMALMAKDHDFLAP 438

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD--- 458
           F  GED+Y          PI + +   R + KV+ L   Y  G         H       
Sbjct: 439 FEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTMYGLGIAKLARQIGHTEESAAQ 489

Query: 459 -LQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFAVKDKLIGTACELV 506
             +Q  + +K    +    Q  +             L +   Y   AV   + G+A +++
Sbjct: 490 IRRQMFEAMKGCERWMRKVQNVAETYGRVVTAGGRILPVDPGYEYKAVNYAIQGSAYDVL 549

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
             +     +  +     L      VV    +   +++   P
Sbjct: 550 ANSIVEMDRRGISDHLQLAMHDELVVDTEVAEEVQQIMLTP 590



 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 15/85 (17%)

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
            Y  K     +Q  + D+L   +    + G    + L +HDE+V +T          +  
Sbjct: 531 GYEYKAVNYAIQGSAYDVLANSIVEMDRRGISDHLQLAMHDELVVDTEV-----AEEVQQ 585

Query: 650 LMTKNPS----WAKGLPL----KAE 666
           +M   P     WA+ +P+    +A+
Sbjct: 586 IMLTPPEFLITWAERVPVLRTDRAD 610


>gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567]
 gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567]
          Length = 579

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 105/342 (30%), Gaps = 50/342 (14%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDI 224
           +RL  L+  E    L+   I   G   D  +       I            +  +L E I
Sbjct: 160 ERLRLLAAAESAGSLVAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQI 219

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +      L   L    G+++       LK     +   +  + +++     
Sbjct: 220 RADLFAPHLNPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWVLIE---- 274

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
               IL+   L              + + A+    W+          R  R    L    
Sbjct: 275 ---PILRYKKL-------------YRIFTANGWS-WADSWV------RNGRFRPHLEVGG 311

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
            A  R              +RS I+A  G+  +V+D + IE R+LA ++ ++    A   
Sbjct: 312 AATGRWGASGGGALQLPAEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGR- 370

Query: 405 GEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G D+Y      A+     + +     RA  KV  LA+ Y G +     +  H      + 
Sbjct: 371 GTDMYTGIAELARLEGVALTE-----RAQAKVGLLAIMYGGRSGEIGALLPHVAKLFPRA 425

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            +  +  +   +     +  L      P+    ++   T  +
Sbjct: 426 MEFTERAARIGEVGGQVTTFLGRTSPTPD----ERFKRTVAD 463


>gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
 gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
          Length = 650

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 119/408 (29%), Gaps = 58/408 (14%)

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDS--PPYDCTRANHVQA-WQLFGEYCKRDVEATREL 173
                     +G+     F   + ++    ++        A  +L  ++        R +
Sbjct: 165 KLPVARQIAGQGELFGDDFLTAAEENTVSGHEAAPPTLTSADTELVHQHLDEFTAQLRAI 224

Query: 174 F-----KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERK 218
                 +RL  L+  E    L+   I   G   D          I            +  
Sbjct: 225 ATGAHPERLRLLAAAESAGSLVAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGEHPAKLM 284

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L E I         +      L   L    G+++       LK     +   +  +  +
Sbjct: 285 ELAEQIRADLFAPHLNPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWAL 343

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +         IL+   L              + + A+    W+          R  R   
Sbjct: 344 IE-------PILRYKKL-------------YRIFTANGWS-WADSWV------RNGRFRP 376

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            L     A  R              +RS I+A  G+  +V+D + IE R+LA ++ ++  
Sbjct: 377 HLEVGGAATGRWGASGGGALQLPAEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEAL 436

Query: 399 IKAFANGEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             A   G D+Y      A+     + +     RA  KV  LA+ Y G +     +  H  
Sbjct: 437 ASAGR-GTDMYAGIAELARLEGVALTE-----RAQAKVGLLAIMYGGRSGEIGALLPHVA 490

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               +  +  +  +   +     +  L      P+    ++   T  +
Sbjct: 491 KLFPRAMEFTERAARIGEVGGQVTTFLGRTSPAPD----ERFKRTVAD 534


>gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 977

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 113/380 (29%), Gaps = 59/380 (15%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-LSEAVSSDGRLRGTLQFYGA 314
            ++  L  + S  +     + L   R A+    +   +  + +       +      +  
Sbjct: 554 TAKKRLHDMFSKVSDRLHLRVLEKPRDAAVEDDVAAPDAPMPQVSEVCYSIHPDWALHN- 612

Query: 315 SRTGRWSGCVFQPQNLPRQE------RSEEILTQTIQALNRGETIADPLGLASD------ 362
           + TGR    +   QNLP+Q             TQ   +   G+    P G          
Sbjct: 613 TSTGRIFSALPNVQNLPKQPPRTAFPIHALSATQDRSSNGGGDESLRPYGYVDSPTEEDV 672

Query: 363 -----------------------------CVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R    A  G  LV  D   +E R+LA ++
Sbjct: 673 DRWLSLAEAGVIDQASSAQFLLFPEHPQWTLRHLYCAPPGCVLVSFDFNQLELRLLAHLS 732

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAK----VF 448
           G+    +  ++  D+     A     P ID V  EQR   KV+   L Y  G +      
Sbjct: 733 GDSALQEHLSSNVDVLALVTASVLRLPSIDHVRPEQRQAVKVIVYGLLYGMGPELMDVRI 792

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           + +        QQ   + +  ++  D E A +  L  +  +    V+  L  T  E    
Sbjct: 793 RKINEEFATAEQQQQHDREGAASSSDPESASARDLLRRFYHAYPRVESYLRETRQEAQNS 852

Query: 509 AWRAKHQGVLQLWKDLT------EGFACVVQEGGSISAR---RVANVPRLVMRRH--KRD 557
                  G   L  +           A  VQ G +       R  +  R     +     
Sbjct: 853 LVVETLSGRKTLLAETDANRRKQRAIAQAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAP 912

Query: 558 VHIVLPSSRRLVYSDVKGDC 577
           + +V+     LVY+  +   
Sbjct: 913 LALVMSIHDELVYATPRVAI 932


>gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 142

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 10/145 (6%)

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
             ++ K  E I     +L++    +       S  T  L+  LF   GI  +  + G   
Sbjct: 1   PAVLHKHSEEITLRLAELEKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAP 59

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASR 316
           S  S   + +LA D  L ++      + KL     + L   ++   GR+  +      + 
Sbjct: 60  ST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTA 117

Query: 317 TGRWSGCVFQPQNLP-RQERSEEIL 340
           TGR S      QN+P R E    I 
Sbjct: 118 TGRLSSTDPNLQNIPVRNEEGRRIR 142


>gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 1103

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 105/299 (35%), Gaps = 36/299 (12%)

Query: 238  TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
               L      +  I + ++ +           I Q+  ++ L R  S       +  L +
Sbjct: 730  RNKLLQTNNKMLKIIIDELEKNNYIEEKEKDKIKQIINNIKLYR-ESKKLFQNYIENLPK 788

Query: 298  AVSSDGR-LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +  + + +   L   GAS TGR S      QN+    +    ++  +  LN      + 
Sbjct: 789  YIQKNTKKIHCNLNQLGAS-TGRLSCDQPNLQNI--HSKFRCTISLKLNQLNSISIKKEN 845

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
            +   S            K L+  D   +E  V+A+++ ++  +K   N  D++V T    
Sbjct: 846  IKNTSI----------NKNLLTFDYKQMELFVMAYLSFDNQLLKMLNNS-DVFVETAKIL 894

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            FNT  ++++KE R + K +   + Y     G AK      +     +  F     +   F
Sbjct: 895  FNT--NEITKELRRMTKTVIYGILYGQSENGLAKNLLISENFAKSLIDNFFNFYPNVYKF 952

Query: 473  EDWEQAESHHLWMQ--------------DQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
               ++    ++                       ++   + G + +++K A  + ++ +
Sbjct: 953  MQKQKILVKNMNSVYTLIGRKRIVDLGIKNKYRISMNTPIQGCSADIMKFALLSCNKII 1011


>gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1]
 gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1]
          Length = 871

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 80/556 (14%), Positives = 155/556 (27%), Gaps = 148/556 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++  DIE  S   +   G         I    +AW++          +  +  +   +  
Sbjct: 185 EISCDIEGFS-LSMFDSG---------IATIGFAWNEHDAVQIQCDYREMIQDENKHHGY 234

Query: 63  DE------TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
            E       V+         RI++ +               VL  T  +   L    +  
Sbjct: 235 YEPNAEMREVLKWFFTEYPGRIIYHRAN---------HDVKVLIYTLFMEHDLDKEGMHR 285

Query: 117 NFSEHLTKMEEGK--------------ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                  +M++ K                +    +    +   D  +   +       +Y
Sbjct: 286 GLEIMTPRMDDTKIIAYLALNSTADVSYSLKDLGQEHAGNWAQDDIKDIRLITLDDLMKY 345

Query: 163 CKRDVEATRELFKRLIP--LSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQEL 212
              D   T  +  +  P  + D +  L+         L   +   G  ++   + ++   
Sbjct: 346 NAVDAVTTVWVKNKYYPIMVQDQQDALYHGLFKDSLDLIIQMELVGMPMNPRKITEVNTE 405

Query: 213 IAQ-------------------------ERKKLDEDIVKLT------DGIIRSSRQTYAL 241
           +                           E +K +  +  +         I  +      +
Sbjct: 406 LNNLRDGYHNTVMSHPAVAKVEVLIQTSEMEKANAKLKTIQHPLSKFSHIRFNPNSGPQV 465

Query: 242 RMYLFLITGIDL--------VDMSEGTLKSILSH------SNITQLAKDL-ILNRLASSG 286
              L  +  + +           S GTLK +L+H       ++ Q   DL  + ++ S+ 
Sbjct: 466 ARLLHEVLDLPVLDVTATKQPSTSGGTLKKLLNHIKAEPYKDLIQALMDLGAVEKVISAF 525

Query: 287 SAILKLNTLSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
               K   +     +DG   L G+    G + +GR S      QNLP             
Sbjct: 526 MPAFKAGRMK----ADGMMYLHGSFNL-GGTISGRLSSSDPNLQNLPAGS---------- 570

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              V+S   A  G     AD A +E R+ A +  +  KIK + +
Sbjct: 571 --------------TYGKLVKSLFCAPPGFLFGGADFAALEDRINALLTQDPNKIKVYTD 616

Query: 405 GEDIYVTTYAKAF--------NT--------PIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           G D +     + F                   I KV  + R+  K     L Y G    +
Sbjct: 617 GYDGHSM---RTFAFWPDKCDGIVDTVDSINSIQKVYPDLRSKAKTPHFLLQYGGS---W 670

Query: 449 KTMASHCGLDLQQFSQ 464
             +    G   ++  +
Sbjct: 671 MGLVRQVGFSDEEAQE 686


>gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper]
 gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper]
          Length = 617

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 83/487 (17%), Positives = 142/487 (29%), Gaps = 76/487 (15%)

Query: 34  AYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPS 90
           A+ W D   +    D         ++   L         HN  F+   L+   L  D   
Sbjct: 78  AWDWPDGGTQTILLDPARDEEHW-EVAVALLHAARTVAFHNVPFDAPPLYHAGLINDSTI 136

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG-----------KALIARFCKGS 139
           +R + T ++ R       +     AL+        ++G           K   A F    
Sbjct: 137 RRIVDTLLITRFAVPDVMVPKNLTALSVRHLGLDDDKGGLERAFKAAGYKTQQAGFEGMD 196

Query: 140 IDSPPYD--------CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
           I SP Y          T             +      AT           +       + 
Sbjct: 197 ITSPVYRYGAMADTVATLRVEPLMRAKALHWATDHPFATYG-ATTQAEAEELLATQETVH 255

Query: 192 QTINDR---GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           + +  R   G  +D   + +  E +  +R     ++     G+   S +   L  YL   
Sbjct: 256 RVMLRRSAVGLAVDRAYLDRYAEQVDIDRNLAIAELA--AHGLEGGSGKGAKLVEYLAER 313

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLR 306
             +        T K   + +++  L   L   +   +    +   L  +    S  GR  
Sbjct: 314 GELPANWPRTPTRKLRATKADLDGLDHPLAAAQRKLAQIDKVMGYLEKVDRQASVTGRCH 373

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
             +   GAS TGR +    + Q  P   R                               
Sbjct: 374 PQVGVLGASATGRMAYGSPELQQFPADAR------------------------------- 402

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            II  +G+ L   D + IE   +A +A +   +  F  GED+Y          PI + + 
Sbjct: 403 AIITDDGQGLTSIDWSQIEPVTMALMAKDHEFLAPFEAGEDLYE---------PIQRSAG 453

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R + KV+ L   Y  G      +A   G   +  +Q       FE  +  E     +Q
Sbjct: 454 IDRPVAKVVLLGTMYGLGIA---KLARQIGHTEESAAQI--RRQMFEAMKGCERWMRKVQ 508

Query: 487 DQYPEFA 493
           +    + 
Sbjct: 509 NVAETYG 515



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC 648
           + Y  K     +Q  + D+L   +    + G    + L +HDE+V +T          + 
Sbjct: 529 QGYEYKAVNYAIQGSAYDVLAHSIVEMDRRGIGDHLQLAMHDELVVDTEV-----AEEVQ 583

Query: 649 SLMTKNPS----WAKGLPL----KAE 666
            +M   P     WA+ +P+    +A+
Sbjct: 584 QIMLTPPEFLITWAERVPVLRTDRAD 609


>gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1]
          Length = 586

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 89/641 (13%), Positives = 189/641 (29%), Gaps = 116/641 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPVKLW-DRTEQSAMPSDLLQY 60
            L  DIET         G+  Y + + I     +  +     ++ D   Q  +   + Q 
Sbjct: 2   TLIFDIET--------DGL--YNDASCIHCIGIHDLNAGETYVFNDVGTQQPITKGI-QL 50

Query: 61  LRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L D  ++ V HN + ++  +  K       +   + T VL+R     + L +      + 
Sbjct: 51  LEDADLI-VGHNIIGYDIPVISKLFPWFSRTNGVLDTLVLSRL--YHTDLLDIDQKRKWK 107

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               ++    +L A   +       +  T A+  +  Q   +Y  +DV  TR+L+K    
Sbjct: 108 HMPLQLYGRHSLEAYGYRLGEYKGSFGKT-ADWKEWSQDMEDYMIQDVNVTRKLWKHFPQ 166

Query: 180 LSDG---ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--------- 227
           + +    E  +  +       G+  D +   +L + +  E   L   + K          
Sbjct: 167 IPEWVQLEHRVAQILTEQEIYGWYFDENAARELAQTLYTELDDLKGVLRKRYPYVAGREF 226

Query: 228 -----------------TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                            T  +  S      +   +  + G      ++   K+ +    +
Sbjct: 227 TPKRVNRSLGYVEGATCTKLVEFSPTSRDHIAWVMKNLHGWKPDKKTKAG-KTAIDEIVL 285

Query: 271 TQLAKDLILN--RLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            ++  +  L   R       +  L    N   +    D R+        A+ T R +   
Sbjct: 286 KEIGTEEALQFFRCLEITKQLGMLSEGKNAWLKLSRKD-RVHHHCS--VATVTHRCAHRN 342

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
                +P                                 R    AS G  +V ADL+GI
Sbjct: 343 PNLAQVPSDL----------------------------NFRRLFCASPGHIMVGADLSGI 374

Query: 385 EARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
           E R+LA      +D +        DI+     K             R + K +  A  Y 
Sbjct: 375 ELRMLAHYLARYDDGRYGDILLHGDIHQENADKI-GIS--------RRLVKTVTYAFLYG 425

Query: 443 GGAKVFKTM---------ASHCGLDLQQ-FSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
            G +              A   G +++Q +   +       +  +  +   +++      
Sbjct: 426 AGDQKIGLSYDQGLSPDKAKQKGKEIRQAYMDAIPGLEKLVEATKKAADRGFIRSIDGRH 485

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP----R 548
              D    ++ + +    ++    + + W  +       +         ++A +      
Sbjct: 486 INVD----SSHKALNMLLQSSAGCIAKRWMVIANDNFPTIDNEYLAHTHQLAFIHDELQF 541

Query: 549 LVMRRHKRDVHIVLPSSRRLV--YSDVKGDCSYLNTATSQL 587
             +  +  D+   L     L   Y +++   +      S  
Sbjct: 542 ECLPLYAEDLKTHLELCAELAGEYYNLRIPIAAEGKIGSTW 582


>gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
 gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
          Length = 568

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/400 (16%), Positives = 120/400 (30%), Gaps = 69/400 (17%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
           A F    +   P         +         +   +A R   +RL  L   E    ++  
Sbjct: 126 ALFEDSGLSRAPRHSLEELRTEYADQQEALSQASTDANRR--QRLQLLLAAESAGAMIAA 183

Query: 193 TINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALR 242
            +   G     +L  ++                  + L  ++ +L +    +      L 
Sbjct: 184 ELQHTGVPWREELHEEILADYLGPRPPLGHRPARLEALTTELRRLLNSPGLNPDSPQELM 243

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             L    GI++    +  LK   SH  I  L     L RL ++           +A  ++
Sbjct: 244 RALH-RNGIEVKTTRQWELKES-SHPAIEPLLAYKKLARLHAANGW-----AWLDAWVNN 296

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR +      G   +GRW+        +PRQ                             
Sbjct: 297 GRFQPEYVVGGVV-SGRWASRGGGALQIPRQ----------------------------- 326

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R  + A  G KL+VAD + +E RVL  +A +    +A  + +D+Y    A+ F     
Sbjct: 327 -IRGAVHADPGHKLIVADASQLEPRVLVALAQDSKMAEAARD-KDLYAGIAAQGFG---- 380

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-------DLQQFSQNVKS---TSTF 472
                 RA  KV  L   Y         +              ++Q ++  ++    ++ 
Sbjct: 381 ----GDRAKAKVALLGAIYGATTGESGRLMPQLTRTYPRAVGFVEQAAREGEAGGTVTSR 436

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                      W+Q Q    A + +          +  R 
Sbjct: 437 LGRSSPPPSDRWLQSQKSTTAEEQRRADAIARSRGRFTRN 476


>gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1]
 gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax]
          Length = 1221

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 45/268 (16%)

Query: 283  ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             S       +  L + +     ++       GAS TGR S      QN+  + R    L 
Sbjct: 800  ESKKLFQNYIENLPKFIQKETNKIHCNFNQIGAS-TGRLSCEQPNLQNIHSRFRCAVSLK 858

Query: 342  QTIQALNRGETIADPLGLASDCVRSCI----------------------IASNGKKLVVA 379
                      +    +       R  +                         +G+ L+  
Sbjct: 859  GGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGAPPDGENLITF 918

Query: 380  DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            D   +E  V+A+++ +   +K   +G D++V T    FNT   +V+ E R + K +   +
Sbjct: 919  DYKQMELFVMAYLSFDVQLLKMLQSG-DVFVETAKVLFNTT--QVTSELRRMTKTVIYGI 975

Query: 440  GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ--------- 486
             Y     G AK            +  F Q   +   F   ++    H+            
Sbjct: 976  LYGQTENGLAKSLLISEGMASNLISNFFQVFPNVYRFMQMQKILLKHMNRVYTLIGRKRV 1035

Query: 487  -----DQYPEFAVKDKLIGTACELVKKA 509
                       ++   + G A +++K A
Sbjct: 1036 IEPTIKNKYRISMNTPIQGCAADVMKFA 1063


>gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 411

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 96/288 (33%), Gaps = 57/288 (19%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDI 224
           KRL  L   E    L+   +   G    +D+  +L E             ++  +L  ++
Sbjct: 170 KRLQLLLAAESAASLVAAEMQHAGVPWRVDIHEQLLEDALGPRPTGMQRPEKMDRLLAEL 229

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                 I  +      L   L    GI+        L++ + H  I  L     L+RL S
Sbjct: 230 RAKLGAIGLNPDSPQDLMRALH-RAGIETKSARTWELQN-IKHPAIEPLLAYKKLSRLFS 287

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +           +    DGR R      G + +GRW+        +P+Q           
Sbjct: 288 ANGW-----AWLDQWVHDGRFRPEYVVGGVA-SGRWASRGGGALQIPKQ----------- 330

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR  + A++G KL+VAD A +E RVLA +A +    +A  +
Sbjct: 331 -------------------VRGAVHANHGYKLIVADAAQLEPRVLAALAQDAKMAEAAQD 371

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
             D+Y    A+ F           RA  KV  L   Y         + 
Sbjct: 372 H-DLYAGIAAQGFG--------GDRAKAKVALLGAIYGATTGESGRLM 410


>gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM]
          Length = 397

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 113/361 (31%), Gaps = 94/361 (26%)

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRL------IPLSDGERDLWLLDQTINDRGY 199
                +  +      +YC RDVE T +L++ L        +S  E  L    Q I  R  
Sbjct: 30  KGDHTDWTRLTPDMEKYCVRDVEVTEKLYQHLLKELDGFDVSSIE--LEHEVQRITARQV 87

Query: 200 RI----DLDLVLKLQELIAQERKKLDEDIVK----------------------------- 226
           R+    DL    +L  L+ +++ +L++ +                               
Sbjct: 88  RLGWLLDLKYAHQLLALLKEKKYELEDKVQDTFRPLPTFIREVTPRCKKDHTLSAVGLKF 147

Query: 227 -------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
                          D    +      +  YL            +G   +I+  S ++++
Sbjct: 148 LGEQWSDVCGPFSRVDCPEFNLGSRQQIGRYLQHFGWKPTKFTEKGH--AIVDESVLSKI 205

Query: 274 AKDLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
             D+   +L +    + K    + +  EA   DGR+ G +   GA  TGR +        
Sbjct: 206 -TDIPEAQLIAEYLMVQKRVAQIQSWIEAADDDGRVHGRVNTNGAV-TGRMTHSEPNLAQ 263

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                     +  P G      RSC     G  LV  D +G+E R+L
Sbjct: 264 VP--------------------AVRAPYGKEC---RSCWTVPEGYSLVGFDASGLELRML 300

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A   G+        +G DI+        N  +  +  E R   K    A  Y  G     
Sbjct: 301 AHYMGDREYTNEILHG-DIHTA------NQHLAGL--ESRDQAKTFIYAFLYGAGDAKLG 351

Query: 450 T 450
           T
Sbjct: 352 T 352


>gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2]
          Length = 588

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 104/350 (29%), Gaps = 88/350 (25%)

Query: 161 EYCKRDVEATRELFKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           EYC++DVEA   + K   P  +        E D  L+       G+  D+D    L+  +
Sbjct: 151 EYCEQDVEANLPIVKLFQPKLEQYADAIKTEHDCALVMTRQEQAGFPFDIDKARALESKL 210

Query: 214 AQERKKLDEDIVK---------------------LTDGII-----RSSRQTYALRMYLFL 247
             E + L +++                       +T          S      +  + F 
Sbjct: 211 RSELETLSDEMRATFTFVAGKEFTPARNNATRGYITGCPFTKLTEFSPTSRDHI-AWAFQ 269

Query: 248 ITG----IDLVDMSEGTLKSILSHSNITQLAKD--LILNRLASSGSAILKLNTLSEAVSS 301
                  I++ D  +  +   + ++  T+ AK    IL      G      N+  + V  
Sbjct: 270 QHRGWEPIEMTDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGMLSEGKNSWLQMVEK 329

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  +     A  TGR +        +P                              
Sbjct: 330 DGRIHHSCVLNTA--TGRNAHMRPNLAQVPSGHE-------------------------- 361

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R       G   V AD +G+E R LA      +  K        DI+       + T
Sbjct: 362 --FRELFTPGEGYVQVGADASGLELRCLAHYLARFDGGKFGKVLLEGDIHTDLA-NIYGT 418

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG-------AKVFKTMASHCGLDLQQF 462
                    R  GK +   L Y GG       A   K  A+  G  ++Q 
Sbjct: 419 D--------RKTGKTVTYCLIYGGGDTKLGLSAGEPKKSAASRGKKIRQA 460


>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 635

 Score = 91.0 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 26/222 (11%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T           LA 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +  H T   E  A   +  + + +  P            +   EY   D + T +L + 
Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514

Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L      E             L  +   +   G  ID D +      IA     L++   
Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAY 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L       +  T  L+  LF   G+ ++   +      +  
Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKRQKVRHQQMKK 615


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 103/345 (29%), Gaps = 57/345 (16%)

Query: 7   DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
           D ET +  P+    VG+    E  +A     A+     P    D  EQ  +   L +   
Sbjct: 348 DTETTALDPMVARLVGLSFSVEPGKAAYLPVAHR---GP----DMPEQLPLDEVLARLKP 400

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118
            L       V  +  ++  +     GI++       T + +       +     LAL   
Sbjct: 401 WLESADRRKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSLALRHL 458

Query: 119 SEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                K E+  GK      F + ++                             T +L +
Sbjct: 459 GIKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------------ITLQLHR 502

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            L P             + E  +  + + +   G  ID  L+      IA    +L+   
Sbjct: 503 ALYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEIATRLIELEAQA 562

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L  G   +      +    F    + +V  +     S      + +LA+D  L +L  
Sbjct: 563 YELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLL 620

Query: 285 SGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGC 323
               + KL     + +   V  + GR+        A R  R +  
Sbjct: 621 EHRGLSKLKSTYTDKMPRMVIPATGRVHTNYAQ--AVRRSRAASH 663


>gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 727

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 37/211 (17%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L   E  +  +   +   G ++D+  + ++++  A + ++  E   +     + + +   
Sbjct: 524 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWESAGERV-NLQSPK 582

Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291
            L+  LF   G+     ++          L+++  HS     A   +   L    +  LK
Sbjct: 583 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLK 642

Query: 292 --LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             + TL +A +  DGR+  T +   A+ TGR S      QN+P +               
Sbjct: 643 QIVQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 686

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVA 379
                      A   +RS  +         A
Sbjct: 687 ---------NAAGREIRSAFVPGRDTSRCSA 708


>gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 566

 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 137/465 (29%), Gaps = 126/465 (27%)

Query: 196 DRGYRIDLDLVLKLQELIAQERK--KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           DR  R+  + +        + +    L   I     G   +   + ++   L    GI++
Sbjct: 184 DRHLRLLEERLGPRVPAGQRPKALVDLAAKISAALGGRPVNPDSSASVVRAL-AREGIEV 242

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
               +  L+  + H  +  L +   L+RL S+           +   +DGR R      G
Sbjct: 243 PAARKYLLQD-IDHPAVAPLLEYKELSRLHSANGW-----AWLDEWVTDGRFRPHYVVGG 296

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
              +GRW+        +PR                               +RSC  A  G
Sbjct: 297 VV-SGRWATRGGGALQIPR------------------------------ALRSCASADPG 325

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN----TPIDK-VSKEQ 428
            KLVVAD A +E RVL  ++G+    +  A   D+Y       F+     P+    +++ 
Sbjct: 326 WKLVVADGAQLEPRVLTALSGDRRLAEV-AAATDLYARLAEALFSGTRYVPLRPGDTRDD 384

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R+  K+  L+  Y G +          G  L    Q      ++ +   A          
Sbjct: 385 RSRAKIAMLSAMYGGTSG-------EAGPLLALLRQRFPDAVSYVERAAAAGERGERVRS 437

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                     +G        AWRA   G+ +              E     ARR      
Sbjct: 438 R---------LGRTSPAPSAAWRALTGGLTE-------------DEATETRARR------ 469

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN-IVQAISR 607
                                             A+          G+ T N +VQA + 
Sbjct: 470 ----------------------------------ASRSW-------GRFTRNFVVQASAA 488

Query: 608 DILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           D+    +            +V  +HDE++   P      V  +  
Sbjct: 489 DLTAVLLATLRGRLPDPAHLVFFLHDEVIVHAPAELADEVAEIVE 533


>gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
 gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
          Length = 72

 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 4  LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
          L+ D+ET    P+   G  AYAE   + L A+A +DEPV +WD T    +P  L + +  
Sbjct: 6  LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64 ETVM 67
             +
Sbjct: 65 PETL 68


>gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1]
 gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1]
          Length = 791

 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 110/374 (29%), Gaps = 73/374 (19%)

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K+  + + V  DG +  +L    A+ TGR S      QNLPR   S            
Sbjct: 438 VKKVKGMLQYVQPDGIIHHSLNLC-ATATGRLSSSYPNLQNLPRDGTSRVK--------- 487

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
             E      G A   +               D + +E  +LA ++G++  ++    G D+
Sbjct: 488 --EMFESRFGTAGRIIE-------------VDYSALEVVMLAALSGDENLLEQLVKGTDM 532

Query: 409 YVTTYAKAFNTPIDKV---------------SKEQRAIGKVMELALGYQGGAK----VFK 449
           +    A     P ++V                K+ R   K    A  Y   A+       
Sbjct: 533 HCLRLAAKLGEPYEEVLHKAVENQAHPEHKRYKQMRTDIKPPSFAAQYGASAEGIAYATG 592

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
               +    L+  ++    +  F    +AE        + PE   +++   T    + + 
Sbjct: 593 VSVEYAKEFLETEARLFPQSIAFRGVVRAEVER---TGELPEGLHREQDEATGAWRIYRR 649

Query: 510 --WRAKHQGVLQL--WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             W+A          W    +     V +                  + +    + + + 
Sbjct: 650 GYWQAPGGARYSFRQWPQWNKELRQRVMDYKDTQIA-------NYWCQGEAFYLMAVSAG 702

Query: 566 RRLVY----------SDVKGDCSYLNTA-TSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           R L +             +G   ++N    +          +     V+AI  D      
Sbjct: 703 RVLRWLLSVNFLANEEFPQGRVCFINNVHDALYFDVHESVVREVGLQVKAIMEDAPKYMS 762

Query: 615 KNATKNGYDIVLTV 628
           +     GY+I   V
Sbjct: 763 ERL---GYNI-AHV 772


>gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM]
          Length = 409

 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 70/417 (16%), Positives = 125/417 (29%), Gaps = 120/417 (28%)

Query: 149 RANHVQAWQLFGE----YCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTIN 195
           +    + ++ F      YC++DV    ++++ L  +            E  ++ + Q   
Sbjct: 29  KKIEFEDFESFSPEMMAYCRQDVSLNHKVYQHLARVEAAGFSKDAVTLEHSVYRIMQAQR 88

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDE--------------------------DIVKLTD 229
           DRG+ +D    + LQ  + +   + ++                           + ++  
Sbjct: 89  DRGFLLDEKHAMSLQAELNENLSQAEKLVHKTFRPRETQMTLVPLMTKAGKVSKMAQIKG 148

Query: 230 G---------------------------IIRSSRQTYALRMYL---------FLITGIDL 253
                                          +      +  YL         F  TG  +
Sbjct: 149 ETKKVRLSDEEYAKASANPNEHLVRCDSEPFNLGSRKQIGEYLMEFGWKPAKFTPTGQPI 208

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
           VD  E  L  I        +A+ L+L +  +  ++  K       V  DGR+RG +   G
Sbjct: 209 VD--EKVLSKIKDIPEAAVIAEYLMLQKRIAQITSWFK------EVGDDGRVRGFVNTNG 260

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  TGR +        +P                                 R C    +G
Sbjct: 261 AV-TGRMTHSHPNMAQVPSTGSP-----------------------YGKECRQCWTVMDG 296

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            KLV  D +G+E R+LA    ++       NG DI+  T  +           E R   K
Sbjct: 297 YKLVGIDASGLELRMLAHYMNDEGFTYELLNG-DIH--TANQM------AAGLESRNQAK 347

Query: 434 VMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
               AL Y  G      +    A   G   Q F  N+ +    +D     +   +++
Sbjct: 348 TFIYALLYGAGDAKLGAVVGGNADDGGRLRQSFFDNLPAFKVLKDRVARAAKRGYLK 404


>gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 388

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 104/333 (31%), Gaps = 64/333 (19%)

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA----GEDWKIKAFANGEDIYVT 411
           P   A   VR+C I   G   + ADL  I+ R++A I     G++   + F +G D+Y  
Sbjct: 31  PAKGAGVRVRNCFIPRKGFTFIGADLGQIQPRIMAHIMYVKYGDNSMRQIFVDGVDLYTK 90

Query: 412 TYAKAFNTP---------IDKVSKEQ-------------RAIGKVMELALGYQGGAKVFK 449
                F  P          D VS +              R + K  +LA+ Y    +  +
Sbjct: 91  MAMMTFGLPEQVCLDKAWYDPVSGQGGFGGEPPATAYYPRKMMKTGQLAVSY---DQSPR 147

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
             A    +              FE++++       M   Y E   +D  + T        
Sbjct: 148 AFAKKMNVTEDVAHM------FFENFDETFPSFKPMVKDYREMMKRDGYVETL------- 194

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                 G  + + D  E  A V +       +R+  +     R             R   
Sbjct: 195 -----FGRKRRFPDFNEVAAFVKRNE-----QRLYRLYSERKRLQNITNPRDADRKRLTA 244

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIV 625
             D     S         +R           ++Q    DIL            + G+++ 
Sbjct: 245 VQDEIDILSAKRGLVGYWIRAAFNA------VIQGTGADILKLIGIRNAAVCRERGWEMN 298

Query: 626 LTVHDEIVSETPDTP--YFSVGTLCSLMTKNPS 656
            ++HDEI +  P+      ++  +  +M K   
Sbjct: 299 ASIHDEIKNSIPNDQFTAETIDLINEIMMKTVE 331


>gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelobacter carbinolicus DSM 2380]
          Length = 593

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 150/475 (31%), Gaps = 67/475 (14%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  + V++W    +  + +       D+  + VA+ +  E   F+            +  
Sbjct: 37  FSGKTVRVWIEKGEQPLAAPFP---TDKNTLFVAYLASAEMTCFQALGWKLPAYVIDLYA 93

Query: 97  SVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                TNG  LP           F E +    E K +       +    PY       + 
Sbjct: 94  EFCLLTNGFFLPRGKGLLGALAYFGEEILDAVEKKDMREL----AQRGGPYTEDEKTDLL 149

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD-----QTINDRGYRIDLDLVLKL 209
            +      C+RDV A   L+K ++P  DG+R L   +       I   G  ID   +  L
Sbjct: 150 DY------CQRDVLALERLWKHMVPHLDGDRSLLRGEYMKAVAKIEMTGIPIDTLALADL 203

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           +E     +  L E++     G+ ++ +    L +      GI        T K       
Sbjct: 204 RENWEVIKTSLIEEL-GAPYGVYKNGKFKTDLFVQYLKNKGIPWPLTP--TRKPKTDADT 260

Query: 270 ITQLAKDLILNR-LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             ++AK     + L      + KL      V +DGR R     +G S+TGR         
Sbjct: 261 FKEMAKCYPELKPLKELQQLLGKLKLNKLQVGTDGRNRYLSGVFG-SKTGR--------- 310

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N P   +                     +      +R  +    G  L   D    E  +
Sbjct: 311 NQPSNSK--------------------CIFGLPSWMRKLVRPGPGNGLAYLDYEQQEFGI 350

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP---IDKVSKEQRAIGKVMELALGYQGGA 445
              ++G++   +A+ +G D Y+    +A   P     +   + R+  K   L + Y  G 
Sbjct: 351 AGALSGDEAMRQAYISG-DPYLAFAIQAGAAPRGATKESHGDIRSRFKATALGVQYGMGQ 409

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                +A +  +   +    +             +     Q      A+ +  IG
Sbjct: 410 ---DRLAMNLNISKGEAKALLDLHRK------TYARFWQWQQDIENKALIEGSIG 455


>gi|312141752|ref|YP_004009088.1| DNA polymerase i pola2 [Rhodococcus equi 103S]
 gi|311891091|emb|CBH50410.1| putative DNA polymerase I PolA2 [Rhodococcus equi 103S]
          Length = 521

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 50/280 (17%)

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           +++     ++ +++       +  + Q   +    F   GI+L   +   L   + H  +
Sbjct: 184 DMLPVRLHQVTDEVSAAFGRQVNPASQPEVVAA--FAREGIELAS-TRKYLLREIDHPAV 240

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L +   L +L ++        T  +A     R R      G   +GRW+        +
Sbjct: 241 EPLLRYRDLAKLHAANGW-----TWLDAWVRGNRFRPVYVPGGVV-SGRWASRGGGALQI 294

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P+                               +R+ +IA  G   V+AD   +E R+LA
Sbjct: 295 PK------------------------------ALRTSVIADPGHTFVIADAGQLEPRILA 324

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+     A A  +D+Y    A+ F           RA  K+  L + Y   A   + 
Sbjct: 325 AMSGDPRM-TAAAGTDDLYALVAAEVFG--------GDRAKAKIAILGVLYGATAGEARA 375

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           + +          Q V+  +     E+ E  H W+    P
Sbjct: 376 LLTLLRKRFPVAVQLVEDAARAG--ERGEVVHSWLGRACP 413


>gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi
           strain CL Brener]
 gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/442 (14%), Positives = 124/442 (28%), Gaps = 86/442 (19%)

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           AT  +F  L  +   E  +  L + ++  G  ++ +++  +   + Q+ K L E      
Sbjct: 390 ATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVADLEQQIKALIEKGNVAL 449

Query: 229 DGIIRSSRQTY--------ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD---- 276
             +  +S ++          L   L    G      ++G ++  +         K     
Sbjct: 450 RAMATASNESIDMETVDAWNLIKTLQSQFGGPWT-FAKGNVEEQMQQIGAYLDEKQSCAD 508

Query: 277 -------LILNRLASSGSAI----LKLNTLS--------EAVSSDGRLRGTLQFYGA--- 314
                  L L+       ++     K  ++         E  S++G         GA   
Sbjct: 509 SNVARIWLALHERREFKRSLMEGFTKGASMQARLIAVPEEMASTEGGGHSNPHHVGAQYR 568

Query: 315 -------------SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
                        + T R        Q + +          +                  
Sbjct: 569 LFFSVHAKWSVHHATTSRLFCSRPCLQTVAKNPPISRTAPSS-------SPPVTIFTNPE 621

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420
             +R       G  LV  D   IE RV+A ++G+   ++    G D+      +    P 
Sbjct: 622 WTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRGGSDVLAEMALRVMQLPR 681

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG---------------LDLQQFSQN 465
           +  V+   R   KV+   L Y  G +                           L+ F+Q 
Sbjct: 682 LADVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKETTPSAEQPPLSARQFLRSFNQC 741

Query: 466 VKSTSTFEDWEQAESHHLWM---------------QDQYPEFAVKDKLIGTACELVKKAW 510
             +   F    +  + H                   ++  + AV   + G A  ++  A 
Sbjct: 742 YPAVQGFLRSTRLRAFHEKRCTTLNGLRDLSGEPDGNRRKQMAVALAIQGGAAVILHHAM 801

Query: 511 RAKHQGVLQLWKDLTEGFACVV 532
              H+   +L   L      +V
Sbjct: 802 VEVHEKRHELLPFLPAAAVALV 823


>gi|325672986|ref|ZP_08152680.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325556239|gb|EGD25907.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 521

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 50/280 (17%)

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           +++     ++ +++       +  + Q   +    F   GI+L   +   L   + H  +
Sbjct: 184 DMLPVRLHQVADEVSAAFGRQVNPASQPEVVAA--FAREGIELAS-TRKYLLREIDHPAV 240

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L +   L +L ++        T  +A     R R      G   +GRW+        +
Sbjct: 241 EPLLRYRDLAKLHAANGW-----TWLDAWVRGNRFRPVYVPGGVV-SGRWASRGGGALQI 294

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P+                               +R+ ++A  G   V+AD   +E R+LA
Sbjct: 295 PK------------------------------ALRTSVVADPGHTFVIADAGQLEPRILA 324

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+     A A  +D+Y    A+ F           RA  K+  L + Y   A   + 
Sbjct: 325 AMSGDPRM-TAAAGTDDLYALVAAEVFG--------GDRAKAKIAILGVLYGATAGEARA 375

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           + +          Q V+  +     E+ E  H W+    P
Sbjct: 376 LLTLLRKRFPVAVQLVEDAARAG--ERGEVVHSWLGRACP 413


>gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
 gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
          Length = 690

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 107/332 (32%), Gaps = 31/332 (9%)

Query: 28  AVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF------ 80
             I + A  +   E V  +  T++    S  +  L    V     +S  +  +F      
Sbjct: 324 FEIEMLADNYHTAEQVGFFIGTKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNI 383

Query: 81  --KKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIAR 134
                LG+ +P        +LA     P      L       ++   L + E+       
Sbjct: 384 VAAHRLGLHLP--DIAFDVLLASYLINPDENSNDLGKIAEDHDY-HDLPRDEDV------ 434

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           + KG+    P D                 + D+       ++    +D E  L  +   +
Sbjct: 435 YGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEM 494

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++
Sbjct: 495 EIQGITLNAQTLKDMGTEFSQSIKVLEEKIYG-EAGVKFNLNSPKQLGEVLFEKLNLPVI 553

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309
             ++    + +    + +L     + +         KLN+     L +A   D ++    
Sbjct: 554 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPDHKIHTRY 611

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                ++TGR S      QN+P ++  + I  
Sbjct: 612 -LQTLTQTGRLSSVDPNMQNIPARDEGKIIRK 642


>gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 226

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 60/222 (27%), Gaps = 26/222 (11%)

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
            R+LA    +   I+ F +  DI+    A      ++ ++  +R   K +     Y  G 
Sbjct: 3   LRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCIYGIGP 62

Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD-------------- 487
              A             L+ F     S   +++     +                     
Sbjct: 63  FSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIITNASTTGFVHTINNRRRRINNLTD 122

Query: 488 --------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                   +    AV   + GTA +++K       + +   W  +        +    + 
Sbjct: 123 SSDKKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVP 182

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
              +  V   +    +  V + +P    +      G     N
Sbjct: 183 DHLLDEVCVTLKYLMEHIVQLEVPLVVTVETGKKWGSLHPYN 224



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
             + +Q  + DI+   M    K       G  ++L +HDEIV E PD     +  +C
Sbjct: 137 VNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHL---LDEVC 190


>gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 570

 Score = 87.5 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 126/432 (29%), Gaps = 69/432 (15%)

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            T      A +      ++D  A      RL  L   E    L+   +   G     +  
Sbjct: 137 PTPREPPSAAEF---AAQQDAVAASANPGRLRLLLAAESVGALIAAEMRFAGLPYSAERH 193

Query: 207 LKLQELIAQER---------KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
             L   +   R         + L   I    D    +     AL   L    G+ +   S
Sbjct: 194 DALLTDLLGPRPAYGGPVVLEDLAAQIRAALDSPDLNPDSPPALLRAL-QRAGLRVSSTS 252

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
              L+  L H  I  L     L RL ++        +  E+   DGR R      G   T
Sbjct: 253 SWELRE-LDHPVIEPLLHYKKLARLLTANGW-----SWLESWVQDGRFRPDYVPGGVV-T 305

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GRW+        LP+Q                              +R  ++A  G KLV
Sbjct: 306 GRWATRGGSALQLPKQ------------------------------LRGAVVADPGWKLV 335

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
           VAD A +E R+L  +A +     A   G+D+Y              V+  +RA  KV  L
Sbjct: 336 VADAAQLEPRILTGLAQDQRMAAAGR-GQDLYTGI------VSAGAVT--ERAQAKVAML 386

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
              Y         +         +  + V+  +   +  +A + HL      P      +
Sbjct: 387 GAMYGATTGESGRLMPRLARAFPRAVRLVEEAARAGERGEAVTSHLGRSS--PRPGGSWQ 444

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
              +A    +     + +   Q           VVQ   +  A        L      R+
Sbjct: 445 ETQSAASTAESTPADERRARAQARDWGRFTRNFVVQASAAEWA--------LCWMAELRN 496

Query: 558 VHIVLPSSRRLV 569
               L   R L 
Sbjct: 497 RLTALAPGRPLT 508


>gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 214

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 36/163 (22%)

Query: 398 KIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452
            ++AF  G DI+  T  K F    +D+V+   R   K +   + Y     G AK      
Sbjct: 8   MLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISR 67

Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491
                 +  + +       +                            + +  ++     
Sbjct: 68  QEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAER 127

Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524
            A+   + G+A +++K A             K + +LQ+  +L
Sbjct: 128 TAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 170


>gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
 gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
          Length = 609

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 91/532 (17%), Positives = 157/532 (29%), Gaps = 119/532 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MP-S 55
           MS L  DIET          V          LC    D    ++W  T+       +P  
Sbjct: 1   MSHLIFDIETNGLLDATNR-VH--------CLCIKDADTG--QVWSCTDDGPTGTYIPIE 49

Query: 56  DLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             LQ L D  V+ + HN   F+    +K      P      T V +R       L+    
Sbjct: 50  RGLQLLADAEVL-IGHNILKFDIPALQKVYPWWKPKGVLRDTIVCSRLIWPKDDLR---- 104

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAW----QLFGEYCKRDVE 168
                      ++GK       + ++++  Y     + ++   W    Q   +YC++DVE
Sbjct: 105 ----ERDFRLQKQGKLPGNLIGRYALEAWGYRLGEYKGDYKGPWDVWSQEMQDYCEQDVE 160

Query: 169 ATRELFKRLIPLSDGER--DLWLLDQTI----NDRGYRIDLDLVLKLQELIAQERKKLDE 222
            T  L++++      E   +L    Q I       G+  D      L   + Q + +L+ 
Sbjct: 161 VTFRLYQKIKEKGWKEESIELEHRVQWIIHRQEQYGFLFDQAKAASLYADLVQRKTELEA 220

Query: 223 DIVKLT-----------------------------DGIIRSSRQTYALRMYLFLITGIDL 253
           ++                                   I         +   L    G + 
Sbjct: 221 ELQSAFPPWEVESVFVPKVNNRVRGYVKGVPFTKRRTIHFKPSSRDHIAGRLKAKYGWEP 280

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK--------LNTLSEAVSSDGRL 305
            + ++     +     ++ L       +L S    + K             + V +DGR+
Sbjct: 281 SEFTDEGKPKV-DEDVLSHLP--YPEAKLLSEYLMVEKRLGQIATGKEAWLKHVKADGRI 337

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            G +   GA  TGR +        +P                                 R
Sbjct: 338 HGDVTTNGAV-TGRMTHSKPNIAQVPGNGSP-----------------------YGHRCR 373

Query: 366 SCIIASNGKKLVVADLAGIEARVLA-WIAGEDW-------KIKAFANGEDIYVTTYAKAF 417
              +A+  K LV  D   +E R LA ++A  D               G D++     KA 
Sbjct: 374 ELFVAAKRKLLVGCDADALELRCLAGYMARYDGGAYVRTVLEGKKELGTDMHTLNA-KAL 432

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                      R + KV   A  Y  G     T+      + Q++ +  ++ 
Sbjct: 433 GCS--------RDVAKVWFYAFIYGAGDFKLGTILGAPKGEEQKWGRRSRAR 476


>gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans]
 gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans]
 gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1]
 gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans]
 gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans]
 gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans]
 gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans]
 gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans]
 gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans]
 gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans]
 gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans]
 gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans]
 gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans]
 gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans]
 gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans]
 gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans]
 gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans]
 gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans]
 gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans]
          Length = 144

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G    +  T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIA-STKELQKILFDDLKLRIVKKT 60

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQF 311
           +        H  + +LA +  +           KL     + L + V+   GR+  +   
Sbjct: 61  QTGF--STDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 312 YGASRTGRWSGCVFQPQNLPRQER 335
             A+ TGR S      QN+P ++R
Sbjct: 119 TIAA-TGRLSSTDPNLQNIPIRDR 141


>gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
 gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
          Length = 875

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/572 (13%), Positives = 151/572 (26%), Gaps = 179/572 (31%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------ 46
           +L  DIE  S       +  +G             A++  D      D            
Sbjct: 189 ELTCDIEAFSLSMFDSGIATIG------------FAWSQHDAVQIQVDYQEMAEPSGGLY 236

Query: 47  --RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   M   L  +        + H + F+  +    L +                  
Sbjct: 237 GYCETNEPMRDVLRWFFEQYKGQLIYHKANFDVKVLIYQLYMAHD--------------- 281

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR--ANHVQAW------ 156
               L    +          M++ K ++A     S  SP Y        H   W      
Sbjct: 282 ----LDKVGMLRGLEIMCRGMQDTK-VVAYLALNSTSSPSYSLKDLGQEHAGDWSQGDDI 336

Query: 157 --------QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                       EY   D   T  ++ +  P+   E+      Q     G  ++   ++ 
Sbjct: 337 KDIRKIPLDQLMEYNAVDAVTTMYVWNKYYPVMVAEK------QDQLYHGLFMESQEMII 390

Query: 209 LQELIA-----QERKKLDEDIVKLTDGIIR------------------------------ 233
             EL+      +   +++ ++ KL DG                                 
Sbjct: 391 HTELVGMPMCPKRLAEVETELTKLRDGYFNTIMQDPMVHRTTLLLREEAMVKKNATLKTI 450

Query: 234 ------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI--- 278
                       +        + L  + G+ ++D +  T +       +T+L +      
Sbjct: 451 QKTIDDFSHIEFNPGSGPQKALLLHKVIGLPVLDKTP-TGQPATGGDELTKLIRHPAGAS 509

Query: 279 LNRLASSGSAILKLNTLSEA---------VSSDG--RLRGTLQFYGASRTGRWSGCVFQP 327
              L  +   + ++  +  A         + +DG   L G+    G + +GR S      
Sbjct: 510 FKGLLQAMIDLDRVQKILSAFIPAFKAGRLKADGMLYLHGSFNL-GGTISGRLSSSDPNM 568

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QNLP                                ++S  +A+ G     AD A +E R
Sbjct: 569 QNLPSGS------------------------AYGKLIKSIFMAAKGYLFGGADFAALEDR 604

Query: 388 VLAWIAGEDWKIKAFANGEDIYVT---------------TYAKAFNTPIDKVSKEQRAIG 432
           + A +  +  KIK + +G D +                 T +      I  +    R   
Sbjct: 605 INALLTRDPNKIKVYTDGYDGHSMRTFAFWPEKCIGIVDTVSSIN--SIQHIYPGLRGEA 662

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           K     L Y G    +  +  + G    +  +
Sbjct: 663 KAPHFLLQYGGS---WMGLVKNVGFAEDEAKR 691


>gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
 gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans]
 gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis]
 gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae]
 gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
 gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi]
 gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
          Length = 144

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 6/142 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G    +  T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIA-STKELQKILFDNLKLRIVKKT 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQER 335
           A+ TGR S      QN+P ++R
Sbjct: 121 AA-TGRLSSTDPNLQNIPIRDR 141


>gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri]
          Length = 144

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I K   G    +  T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHKQAGGPFNIA-STKELQKILFDNLKLRIVKKT 60

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQF 311
           +        H  + +LA +  +           KL     + L + V+   GR+  +   
Sbjct: 61  QTGF--STDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 312 YGASRTGRWSGCVFQPQNLPRQER 335
             A+ TGR S      QN+P ++R
Sbjct: 119 TIAA-TGRLSSTDPNLQNIPIRDR 141


>gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
 gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
          Length = 587

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 133/481 (27%), Gaps = 106/481 (22%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDL-----DLVLKLQELIAQ-----ERKKLDEDIV 225
           RL  L   E    L+ Q +N  G   D       L   L E             L   I 
Sbjct: 168 RLALLCHAESVGGLIAQELNHAGVPFDASVHHAQLTTALGEADRHGGRPARMAALVARIR 227

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +  D    +      L   L    G+++    +  L   L H  I  L +   L RL ++
Sbjct: 228 ETLDAPGLNPDSAPTLVAAL-RRAGLEVTSTRKWEL-RGLDHPVIEPLLEYKALARLYTA 285

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                   +       DGR R      G   TGRW+        LP              
Sbjct: 286 NGW-----SWMRHWVRDGRFRPDWVAGGVV-TGRWASRGGGALQLP-------------- 325

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +RS + A  G +LVVAD A +E RVLA ++ +    +A A G
Sbjct: 326 ----------------QQIRSAVRAEPGWRLVVADAAQLEPRVLAAMSQDGAMARAAAAG 369

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y            + V  + RA  KV  L   Y   +     + +            
Sbjct: 370 -DLYQ-------GLVDEGVV-DTRAHAKVAMLGAMYGATSGEAGALMARLRR-------- 412

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                    + +A                    +G         WR              
Sbjct: 413 --------AYPRAMGWVDAAAAAGERGERVSTWLGRTSPAPPAFWR-------------- 450

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E  A       S +A R A+       R  R+  +   +         +    ++     
Sbjct: 451 EAQAAAQHPDASPAAERRAHSAAREWGRFTRNFVVQGTA--------AEWALCWMGFLRR 502

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
            L      GG    +            G    T +  ++V  +HDE++   P+     V 
Sbjct: 503 GLDDLHGPGGMREGD-----------GGPGGLTASRPELVYFLHDEVIVHAPEEFADEVA 551

Query: 646 T 646
            
Sbjct: 552 E 552


>gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201]
 gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201]
          Length = 588

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 92/317 (29%), Gaps = 52/317 (16%)

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRI----------DLDLVLKLQELIAQERK 218
           AT    +RL  L   E    L+   +  RG             D+       E      +
Sbjct: 168 ATARNPQRLERLLSLESQGALVAADMRHRGIPWNPAVHQQILEDMLGTRPAGEERPARMQ 227

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQL 273
           +L +++         +      L   L    G+D+       + E TL +          
Sbjct: 228 ELAQEVRTALAAPALNPDSPVELLKALRNA-GVDVDTTRAFKLQEWTLVNGQPQEQRVAT 286

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              ++  +  S   +    + L   V   GR        G   TGRW+        +P+ 
Sbjct: 287 VTPVLEYKKLSRVFSATGWHWLDTWVHE-GRFHPEYVVGGVV-TGRWAARGGGALQIPK- 343

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R  + A  G  LVVAD A +E RVLA +A
Sbjct: 344 -----------------------------YIRDAVRADPGHALVVADAAQLEPRVLAILA 374

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D   +A   G D+Y     +           E R+  K+  L   Y   +        
Sbjct: 375 RDDALAEASR-GRDLYTAIAEQ--GQARGSELTE-RSHAKLALLGAMYGATSGAGGRFMP 430

Query: 454 HCGLDLQQFSQNVKSTS 470
                  +    V+  +
Sbjct: 431 QLTRMFPRAVGYVEHAA 447


>gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
          Length = 144

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 6/142 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G    +  T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIA-STKELQKILFDNLKLRIVKKT 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELIGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQER 335
           A+ TGR S      QN+P ++R
Sbjct: 121 AA-TGRLSSTDPNLQNIPIRDR 141


>gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001]
 gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001]
          Length = 631

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/509 (12%), Positives = 143/509 (28%), Gaps = 133/509 (26%)

Query: 170 TRELFKR-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            +E+ ++ +  + D E  +  +   +  RG ++D D +++++    +ER+   + I ++T
Sbjct: 205 EKEIEQQGIQAVWDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKERRDASDLITRVT 264

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN-RLASSGS 287
              +       A++       GI +  +     +     +           +  + ++  
Sbjct: 265 GVAV---GPEDAMKK------GILVDALRAAGHQLNADDAVDKHFIARHEGHCEVTAALG 315

Query: 288 AILKLNTLSE-AVSS------DGRLRGTLQFYGA----------SRTGRWSGCVFQPQNL 330
            + K +TL + A+        +GR+  +     A          +R GR S      Q  
Sbjct: 316 RLRKWDTLRKLAIDPVKNHMVNGRIHCSFNQMAADKDNGKGTKGARYGRLSCEHVNMQQQ 375

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P ++     +                        R      +G      D +  E R+L 
Sbjct: 376 PSRDEDIAPIW-----------------------RRIYRPDDGGLWAALDYSQQEPRMLV 412

Query: 391 WIAGEDWK------IKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
             A            + + +  D   +              ++   R   K++ L L Y 
Sbjct: 413 HFAEICGMPGASEAAQKYRDDPDTDNHQMMA---------DMAGISRKEAKIIFLGLCYG 463

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G               ++   +++  +   + ++            P    K  + G  
Sbjct: 464 MG--------------QEKLCHDLQLPTKIIELKKG-----------PRKGQKMVVAGD- 497

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                                                 +++ N+ +           I  
Sbjct: 498 ----------------------EGARLFETFHAKVPFVKQMENLCKDRATERG---FITT 532

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
              RR  +       +Y  T             K    ++Q  S D     M  A + GY
Sbjct: 533 LLGRRCRFKMGDDGLNYWGTH------------KALNRLIQGSSADQTKAAMVAADEAGY 580

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           ++ L VHDE   +           +  +M
Sbjct: 581 ELQLQVHDE--IDLTVESREQAEKIAEIM 607


>gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie]
          Length = 619

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 134/430 (31%), Gaps = 84/430 (19%)

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
             +     + T  +  + +          +  T+E+  R++        LW      +  
Sbjct: 218 PVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMM--------LWR-----SAL 264

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVD 255
           G  +D + + +    +A E+     D+     G+   + +   L  YL     +      
Sbjct: 265 GINVDREYLDRYLNQVADEQAIYTADLA--AHGLDGGTGKGAKLVQYLAERGELPQPWPR 322

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DGRLRGTLQF 311
             +G L++    +++  LA    L +   S + I K       VS+     GR    +  
Sbjct: 323 TPKGALRAT--KADLEALATVNPLAKAQLSLANIEKTLGYLSKVSTQAAVTGRCHPQVAT 380

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GAS TGR S    + Q  P+  R                                    
Sbjct: 381 LGASATGRMSYGSPELQQFPKDARPILC-------------------------------D 409

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  L   D + IE   +A +A +   + A+  GED+Y          PI   +   R  
Sbjct: 410 DGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYG---------PIMLAAGIDRPT 460

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLD----LQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            KV+ L+  Y  G      +  H         +Q    +K ++ +    +  +       
Sbjct: 461 SKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVI 520

Query: 488 QYPE-----------FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           AV   + G+A +++       +  V    + +T+     + +  
Sbjct: 521 TAGGRILPVDEGGIFKAVNYTVQGSAYDVL------ANTIVEMYRRGMTDELYLAMHDEV 574

Query: 537 SISARRVANV 546
            +S    A V
Sbjct: 575 VVSTPVAAEV 584



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 26/103 (25%)

Query: 585 SQLMRERTYGG-----------KLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDE 631
           +Q  R  T GG           K     VQ  + D+L   +    + G   ++ L +HDE
Sbjct: 514 AQFGRVITAGGRILPVDEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYLAMHDE 573

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAE 666
           +V  TP         +  +M+  P     WA+  P+    +A+
Sbjct: 574 VVVSTPV-----AAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611


>gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert]
          Length = 619

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 134/430 (31%), Gaps = 84/430 (19%)

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
             +     + T  +  + +          +  T+E+  R++        LW      +  
Sbjct: 218 PVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMM--------LWR-----SAL 264

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVD 255
           G  +D + + +    +A E+     D+     G+   + +   L  YL     +      
Sbjct: 265 GINVDREYLDRYLNQVADEQAIYTADLA--AHGLDGGTGKGAKLVQYLAERGELPQPWPR 322

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DGRLRGTLQF 311
             +G L++    +++  LA    L +   S + I K       VS+     GR    +  
Sbjct: 323 TPKGALRAT--KADLEALATVNPLAKAQLSLANIEKTLGYLSKVSTQAAVTGRCHPQVAT 380

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GAS TGR S    + Q  P+  R                                    
Sbjct: 381 LGASATGRMSYGSPELQQFPKDARPILC-------------------------------D 409

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  L   D + IE   +A +A +   + A+  GED+Y          PI   +   R  
Sbjct: 410 DGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYG---------PIMLAAGIDRPT 460

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLD----LQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            KV+ L+  Y  G      +  H         +Q    +K ++ +    +  +       
Sbjct: 461 SKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVI 520

Query: 488 QYPE-----------FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           AV   + G+A +++       +  V    + +T+     + +  
Sbjct: 521 TAGGRILPVDEGGIFKAVNYTVQGSAYDVL------ANTIVEMYRRGMTDELYLAMHDEV 574

Query: 537 SISARRVANV 546
            +S    A V
Sbjct: 575 VVSTPVAAEV 584



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 26/103 (25%)

Query: 585 SQLMRERTYGG-----------KLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDE 631
           +Q  R  T GG           K     VQ  + D+L   +    + G   ++ L +HDE
Sbjct: 514 AQFGRVITAGGRILPVDEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYLAMHDE 573

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAE 666
           +V  TP         +  +M+  P     WA+  P+    +A+
Sbjct: 574 VVVSTPV-----AAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 118/382 (30%), Gaps = 62/382 (16%)

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYL-----FLITGIDLVDMSEGTLKSILSHSNITQL 273
            L + I  +T  I  +  +      ++     F   GI+L    +  L+ +  H  +  L
Sbjct: 176 DLPQRIQDVTVEIGSAFGRRINPASHVEVVDAFRREGIELASTRKHLLREV-DHPAVPLL 234

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +   L++L S+         L   V  D R R      G   +GRW+        +P+ 
Sbjct: 235 LRHRDLSKLFSTNG----WQWLDSWVRDD-RFRPVYVPGGVV-SGRWASRGGGALQIPKP 288

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +RS +IA  G   V+AD   +E R+LA ++
Sbjct: 289 ------------------------------LRSSVIADPGHTFVIADAGQLEPRILAAMS 318

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + A A  +D+Y    A+ F+          R   KV  L + Y   A   +++ +
Sbjct: 319 GDARMVAA-AGADDLYAPVAAETFD--------GDRGKAKVAILGVLYGATAGEARSLLT 369

Query: 454 HCG-------LDLQQFSQNVKSTSTFEDW----EQAESHHLWMQDQYPEFAVKDKLIGTA 502
                       +++ ++  +       W        S   W            +     
Sbjct: 370 LLRTRFPVAVEYVERAARAGERGEVVHSWLGRACPPPSPDFWSHGDARSRGRFTRNFVVQ 429

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
               + A         +L  D          +   +  R   +  R V+   +    ++ 
Sbjct: 430 ATAAEWALCVLADLRRRLADDPDSELVFFQHDEVMVHTRDPDSATRHVLGAVEVATRLLF 489

Query: 563 PSSRRLVYSDVKGDCSYLNTAT 584
             +R     DV     Y  T+ 
Sbjct: 490 GETRVRFPMDVAVRDCYAETSD 511


>gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 130

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           +  Y+    G  L+   +  L  +L    +    + LI  R     ++  K   L   V 
Sbjct: 1   MMDYISHDLGYPLMQFDKAILGEVLKDDTLPDTDRRLIEIRQQLGKTSTAKYAALKALVM 60

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI----LTQTIQALNRGETIADP 356
           +D R  G L ++GAS TGRWSG  FQPQNLPR           L Q   A        D 
Sbjct: 61  NDHRAHGLLMYHGAS-TGRWSGRHFQPQNLPRPSFKNTDVCIELFQYQNAQLLEMIYNDS 119

Query: 357 LGLASDCVRS 366
           +   S C+R+
Sbjct: 120 MEALSSCLRA 129


>gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1]
          Length = 494

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 135/429 (31%), Gaps = 95/429 (22%)

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
           TG D +D+     ++     ++ +L KD     L        K + + + V  +G +   
Sbjct: 108 TGDDALDLVAKFTEAAQPLRDMKKLIKDTTTYYLVED--DKGKQSGMLQYVEPNGIIHHQ 165

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
           L    A+ TGR SG     QN+PR                            +  V+   
Sbjct: 166 LNNC-ATVTGRLSGSKPNLQNVPRD--------------------------GTSKVKEMF 198

Query: 369 IASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-- 424
           ++  G   +LV  D + +E   LA I+G+   ++   +G D++    A A     + V  
Sbjct: 199 VSRFGSDGRLVECDYSALEVVALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYETVFE 258

Query: 425 ------------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                        K+ R   K    A  Y   A     ++   G  L++  Q  ++    
Sbjct: 259 KCHDKSHPEHKKYKQLRTDIKPRAFANQYGASA---MGISFSTGCSLEEAEQFKETERKL 315

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                  S  + ++ Q  +  +   +              + + V  +WK    GF   +
Sbjct: 316 FPESSTFSERI-VRPQVEQNGLSMPM--------------ESELVNGIWKHFRRGFFKAL 360

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                   +    V  +  +   +D  I            ++G+ S+             
Sbjct: 361 SGTCYSFRQFPKYVKGVGEKYDYKDTQIANYP--------IQGEASF------------- 399

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDI-VLTVHDEIVSETPDTPYFSV--GTLCS 649
                   IVQ     ++   + N    G  + + TVHD I  +  D     +    +  
Sbjct: 400 --------IVQCACGRVIRWLIGNDFFGGKALPINTVHDCIQLDCADRETAIMVGTKVKE 451

Query: 650 LMTKNPSWA 658
           +M   P W 
Sbjct: 452 IMDSTPKWM 460


>gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum]
          Length = 1213

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/511 (13%), Positives = 148/511 (28%), Gaps = 95/511 (18%)

Query: 57   LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-RTNGLPSSLKNACLA 115
            L++ L +E +  V+ N   E              K      +LA         +  + L 
Sbjct: 666  LIRILENEAIKKVSFNCQ-ESFKIFFAYNTYFSPKNIWDPKILAWMYKPESKRVDMSTLV 724

Query: 116  LNFSEHLTKMEEGKALIARFCK------------GSIDSPPYDCTRANHVQAWQLFGEYC 163
            + +        E   +I    +             ++ +         +    QL  E+ 
Sbjct: 725  VEYQIDSHDKLEMANVIKNLDQHTDNNNNNINPSMTVSNYTCLANDIRNGSILQLILEHK 784

Query: 164  KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              D         +L PL   E  +  +   +   G     + +   Q  I    + + + 
Sbjct: 785  LSDA--------KLEPL--QEMQIIPILSKMEYYGVSFCSEALKTCQVHIDSLLENITKQ 834

Query: 224  IVKLTDGI------IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD- 276
               L DG+         S++   L     +     +  + +   +++   + I    K+ 
Sbjct: 835  FHLLRDGLGIKMDDFGLSQRGVVLSCINQIKPS-RIPQIPDAKAQTLRKFAEIDLSLKEE 893

Query: 277  ----------LILNRLASSGSAILKLNTL--SEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                      ++  R+        + N +   + +S    +  +    G + TGR S   
Sbjct: 894  KAKNGDMENLIMACRIYLDHKRFSQFNNIFVKKYISVGQNIYTSWNHTG-TATGRLSSSS 952

Query: 325  FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV---------RSCIIASNGKK 375
               Q +PR   + ++  +     N  +                      R C     G  
Sbjct: 953  PNVQQIPRNVANIKVSDKEDGDGNDYDDDDVSDDEEEGTTNASTVHINARDCFRTRPGYT 1012

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            +V  D + IE RV+A  + ++  +  F    D               KV        K +
Sbjct: 1013 MVALDYSQIELRVMAHQSDDEHLLHFFQQDADF-------------PKVK-------KFI 1052

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                                  D +  ++ +K   T     +          +    +V 
Sbjct: 1053 N---------------------DTKADTKKLKYVRTLLGRHRTFYSPHLTPGEIDRQSVN 1091

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              + G+A +++K A    +Q ++Q  K++ +
Sbjct: 1092 SIIQGSAADIIKAAMIRINQLLIQESKEVNQ 1122


>gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
          Length = 144

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 6/142 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G    +  T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIA-STKELQKILFDNLKLRIVKKN 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQER 335
           A+ TGR S      QN+P ++R
Sbjct: 121 AA-TGRLSSTDPNLQNIPIRDR 141


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/463 (15%), Positives = 135/463 (29%), Gaps = 83/463 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DR--TEQSA---------- 52
           D+ET S    P +      E   I L   A +   V++   D   T +            
Sbjct: 45  DLETFSRASTPAIA----PETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQKLESL 100

Query: 53  -MPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGL----- 105
              + L + L +  V  V H+  FE R +  K     I + R           GL     
Sbjct: 101 GFWTTLQERLANPQVEVVGHSLDFEQRWMLAKY-NFPIRNLRDTKLMSQVYWAGLDPWLL 159

Query: 106 -----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                P SL++ CL L  S   ++                ++                F 
Sbjct: 160 KQHGKPHSLESVCLRLGISIDKSRQTSDWGWGDLGNGQLSNN---------------QFN 204

Query: 161 EYCKRDVEATRELFKRLIPLSDG--ERDLWLLD-------QTINDRGYRIDLDLVLKLQE 211
            Y   D   T ++   L P          +L++         ++  G  +D  ++  +  
Sbjct: 205 -YAANDASITIKVHDLLEPRLKEIGVWTSYLIECAASPAFAQMSHYGMPVDEGVLADVTV 263

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
                 + L E +       +        L   +     + L   +   L  +     + 
Sbjct: 264 AYEAAYQSLVEQLGGTFSECLPHLYSPKKLIALINRRFRVTLKSANVDDLSKLWGIPEV- 322

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 +++ + ++ + +  L+++   V  +G +RG          GR S      QN P
Sbjct: 323 -----RLISVIKTTKTYVDYLHSIQAQV-RNGFVRGKYTQINRKGFGRSSCSEPNLQNPP 376

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                   LT                      +RS     +G   V  D + + ARV   
Sbjct: 377 SPTTFPPELT----------------PYNLPPIRSVFRTHSGCIGVWCDASKLHARVATQ 420

Query: 392 IAGEDWKIKAFAN-GEDIYVTTY---AKAFNTPIDKVSKEQRA 430
            + +   I  F +   DI+ T     ++      D   +  R 
Sbjct: 421 ASLDPELIARFNSPHGDIFCTIAEKLSQLEGMGSDWTEENIRR 463


>gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
 gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
          Length = 789

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 41/222 (18%)

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +I K   + + +  D  +  +L    A+ T R S      QNLPR +  ++         
Sbjct: 435 SIKKTKGMLQYIGPDSIIHHSLN-VAATITARLSSSDPNLQNLPRSDEDDD--------- 484

Query: 348 NRGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     G+A   V+    +  G    ++  D   +E  +LA ++G+   +K   NG
Sbjct: 485 ----------GVAKSRVKEMFTSRFGDDGVIIEVDYTALEVVMLAALSGDQALLKHLQNG 534

Query: 406 EDIYV-TTYA-------KAFNTPIDKVSKE------QRAIGKVMELALGYQGGAKVFKTM 451
            D++     A       +      DK   E      QR   K    A  Y   A      
Sbjct: 535 TDMHCLRLAAKLKRPYEEILAIAKDKHHPEHNSIKQQRTDIKPPSFAAQYGASASGI--- 591

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           A   G+ L+  ++ + + +    + +A +    ++ +     
Sbjct: 592 AFATGVSLEYATEFLATEARL--FPRAIAFRDVVRAEVERTG 631


>gi|48697101|ref|YP_024759.1| DNA polymerase I [Pseudomonas phage PaP2]
 gi|46369536|gb|AAS89617.1| p31 [Pseudomonas phage PaP2]
          Length = 801

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 83/515 (16%), Positives = 149/515 (28%), Gaps = 76/515 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLAR--TNGLPSSLKNAC 113
            LQ +    +    HN L++       +        WI  T  L+    + L   +   C
Sbjct: 223 FLQMVMRSDIPKCFHNGLYDSF---HLMRYHAAPNNWIFDTMGLSHSWYSELSKDVGFLC 279

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L +     K    +   A    G I+S         H+   +   E  K         
Sbjct: 280 SWLLYDHKEWKYMADREHKAI---GGIESYWKYAAYDTHMMM-RALIELLKNGDTWMLRN 335

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +K+  PL         L       G+R++ +  LKL E   +  +   +D+  +TD    
Sbjct: 336 YKKQFPLV-----YPSLYGAFE--GFRVNNETRLKLVEKAEERLESALKDLRIMTDDPEF 388

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG-----SA 288
           +      +  +L+ + G      ++   K+         +A    +  L S         
Sbjct: 389 NPGSPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAF--VASQHPIFALFSDRVNNYSLE 446

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              L+T       + RL  +L  +G + TGR++                +I  Q + A  
Sbjct: 447 KKALSTYFSFRQWNSRLLYSLDPFG-TDTGRFASRA------SAAWIGTQIQNQPVYAKE 499

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA----- 403
             E                    +G      D +  EA   A+++     IKA       
Sbjct: 500 MYE------------------PDDGYIAFEMDFSKAEAICTAYLSRCSALIKALCFPDLD 541

Query: 404 ---NGEDIYVTTYAKAFNTPIDKVSKEQRAIG-KVMELALGYQGGAKVFKTMASHCGLDL 459
              N +D Y       F+   + V+KE R    K +     Y  G               
Sbjct: 542 NEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGP-------------- 587

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           + F  N+    T        +  L +       A K+K      + +  A+      V Q
Sbjct: 588 ETFIDNLDDIQTL----FLAAKILGVVLTLNPKAPKEKTPKDFAKQLLDAYHIPFPEVQQ 643

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            W+ +        +    I+             + 
Sbjct: 644 WWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKK 678


>gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio]
          Length = 619

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 136/430 (31%), Gaps = 84/430 (19%)

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
             +     + T  +  + +          +  T+E+  R++        LW      +  
Sbjct: 218 PVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMM--------LWR-----SAL 264

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVD 255
           G  +D + + +    +A E+     D+     G+   + +   L  YL  +  +      
Sbjct: 265 GINVDREYLDRYLNQVADEQAIYTADLA--AHGLDGGTGKGAKLVQYLADLGELPQPWPR 322

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DGRLRGTLQF 311
             +G L++    +++  LA+   L +   S + I K       VS+     GR    +  
Sbjct: 323 TPKGALRAT--KADLEYLAEINPLAKAQLSLANIEKTLGYLTKVSTQAAVTGRCHPQVAT 380

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GAS TGR S    + Q  P+  R                                    
Sbjct: 381 LGASATGRMSYGSPELQQFPKDARPILC-------------------------------D 409

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  L   D + IE   +A +A +   + A+  GED+Y          PI   +   R  
Sbjct: 410 DGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYG---------PIMLAAGIDRPT 460

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLD----LQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            KV+ L+  Y  G      +  H         +Q    +K ++ +    +  +       
Sbjct: 461 SKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVI 520

Query: 488 QYPE-----------FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           AV   + G+A +++       +  V    + +T+     + +  
Sbjct: 521 TAGGRILPVDEGGIFKAVNYTVQGSAYDVL------ANTIVEMYRRGMTDELYLAMHDEV 574

Query: 537 SISARRVANV 546
            +S    A V
Sbjct: 575 VVSTPVAAEV 584



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 26/103 (25%)

Query: 585 SQLMRERTYGG-----------KLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDE 631
           +Q  R  T GG           K     VQ  + D+L   +    + G   ++ L +HDE
Sbjct: 514 AQFGRVITAGGRILPVDEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYLAMHDE 573

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAE 666
           +V  TP         +  +M+  P     WA+  P+    +A+
Sbjct: 574 VVVSTPV-----AAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611


>gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1]
 gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion]
 gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah]
 gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1]
 gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion]
 gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah]
 gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang]
 gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C]
          Length = 619

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 136/430 (31%), Gaps = 84/430 (19%)

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
             +     + T  +  + +          +  T+E+  R++        LW      +  
Sbjct: 218 PVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMM--------LWR-----SAL 264

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVD 255
           G  +D + + +    +A E+     D+     G+   + +   L  YL  +  +      
Sbjct: 265 GINVDREYLDRYLNQVADEQAIYTADLA--AHGLDGGTGKGAKLVQYLADLGELPQPWPR 322

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DGRLRGTLQF 311
             +G L++    +++  LA+   L +   S + I K       VS+     GR    +  
Sbjct: 323 TPKGALRAT--KADLEYLAEINPLAKAQLSLANIEKTLGYLTKVSTQAAVTGRCHPQVAT 380

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GAS TGR S    + Q  P+  R                                    
Sbjct: 381 LGASATGRMSYGSPELQQFPKDARPILC-------------------------------D 409

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           +G  L   D + IE   +A +A +   + A+  GED+Y          PI   +   R  
Sbjct: 410 DGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYG---------PIMLAAGIDRPT 460

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLD----LQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            KV+ L+  Y  G      +  H         +Q    +K ++ +    +  +       
Sbjct: 461 SKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVI 520

Query: 488 QYPE-----------FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           AV   + G+A +++       +  V    + +T+     + +  
Sbjct: 521 TAGGRILPVDEGGIFKAVNYTVQGSAYDVL------ANTIVEMYRRGMTDELYLAMHDEV 574

Query: 537 SISARRVANV 546
            +S    A V
Sbjct: 575 VVSTPVAAEV 584



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 26/103 (25%)

Query: 585 SQLMRERTYGG-----------KLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDE 631
           +Q  R  T GG           K     VQ  + D+L   +    + G   ++ L +HDE
Sbjct: 514 AQFGRVITAGGRILPVDEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYLAMHDE 573

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAE 666
           +V  TP         +  +M+  P     WA+  P+    +A+
Sbjct: 574 VVVSTPV-----AAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611


>gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T]
          Length = 62

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           MK    NGY +V+  HDE+++E P+  + SV  + +LMT+   W    P++A G++  RY
Sbjct: 1   MKKCENNGYPVVMHTHDELIAEVPED-FGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59

Query: 674 RK 675
           +K
Sbjct: 60  QK 61


>gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 132/409 (32%), Gaps = 107/409 (26%)

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD--------GERDLWLLDQTIND 196
           +    ++++   +   +YC RDV+    + K+L   S          E+ +  + +    
Sbjct: 29  HKIDFSDYLNYSKEMLDYCVRDVQLNAVVLKKLREESRGFSKQCIAIEQGVARIMKQQEV 88

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIV--------------------------KLTDG 230
            G++ DL   L L   + ++++ +++++                            LTD 
Sbjct: 89  NGFKFDLQSALLLLAKLREKKQSIEDEVHNTFKPKWVDDKLVKPYIKKDGDLSKRGLTDD 148

Query: 231 IIR-------------------SSRQTYALRMYL---------FLITGIDLVDMSEGTLK 262
             +                   +      +  YL         F  TG  +VD  E TL 
Sbjct: 149 EYQRCLDTNNFEPFMRQTLQDFNLGSRKQIGEYLIDFGWKPERFTPTGQPIVD--EKTLS 206

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           +I        +A  L+L +       I ++++  E V  DGR+ G +   GA  TGR + 
Sbjct: 207 AITHIHEAKLIADFLLLQKR------IAQVDSWVEGVQEDGRVHGFVIPNGAI-TGRMTH 259

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                  +P                                 R+C     G  L+  D +
Sbjct: 260 RNPNVAQVP-----------------------AVYSPYGKECRACWTVEEGNVLIGVDAS 296

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
           G+E R+LA    ++       NG DI+        N  + K+  E R   K    AL Y 
Sbjct: 297 GLEIRMLAHYMNDEEYTNEILNG-DIHTA------NQKLAKL--ESRDKAKTFIYALMYG 347

Query: 443 GGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            G      V     S      Q F  N  +  +  D  Q  S   +++ 
Sbjct: 348 AGDEKLGSVVGGSTSDGKRARQYFFDNKPTFKSLRDRVQRASALDYVEH 396


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 48/245 (19%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F   GI+L    +  L+ +  H  +  L     L++L S+      L++       D R 
Sbjct: 208 FRREGIELASTRKHLLREV-DHPAVPLLLHHRDLSKLFSTN-GWQWLDSWVR----DNRF 261

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R      G   +GRW+        +P+                               +R
Sbjct: 262 RPVYVPGGVV-SGRWASRGGGALQIPKP------------------------------LR 290

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           S +IA  G   V+AD   +E R+LA ++G+   + A A  +D+Y    A+ F+       
Sbjct: 291 SSVIADPGHTFVIADAGQLEPRILAAMSGDTRMVAA-AGADDLYAPVAAETFD------- 342

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              R   KV  L + Y   A   +++ +          + V+  +     E+ E  H W+
Sbjct: 343 -GDRGKAKVAILGVLYGATAGEARSLLTLLRTRFPVAVEYVERAARAG--ERGEVVHSWL 399

Query: 486 QDQYP 490
               P
Sbjct: 400 GRACP 404


>gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
 gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
          Length = 1444

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 98/302 (32%), Gaps = 52/302 (17%)

Query: 247  LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRL 305
                I + ++ +           + ++ +++ L R  S       +  L + +     ++
Sbjct: 986  KSLKILVDEIEKSNYIKEKEKEKLKKIIRNIKLYR-ESKKLVQNYIENLPKYIQKNTNKI 1044

Query: 306  RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                   GAS TGR S      QN+             I    + E         ++ + 
Sbjct: 1045 HCNFNQIGAS-TGRLSCDQPNLQNI------HSRFRCAISLKGKEENDTHDNNNNNNNIP 1097

Query: 366  SCIIASNG----------------------KKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
               I++N                       K L+  D   +E  V+A+++ ++  +K   
Sbjct: 1098 QIHISTNNVSTNNVPMNIMSSTYPLYTMNKKNLITFDYKQMELFVMAYLSFDEQLLK-LL 1156

Query: 404  NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459
            N  D+++ T    FNT  + V+ E R + K +   + Y     G AK      +     +
Sbjct: 1157 NYSDVFIETAKVLFNT--NDVTNELRRMTKTVIYGILYGQTENGLAKSLLISDTLASNLI 1214

Query: 460  QQFSQNVKSTSTFEDWEQAESHH--------------LWMQDQYPEFAVKDKLIGTACEL 505
            + F Q   +   F   ++    H              L         ++   + G A ++
Sbjct: 1215 ENFFQFFPNVYRFMQMQKFLVKHMNCVYTLIGRKRIILPNIKNKYRISMNTPIQGCAADI 1274

Query: 506  VK 507
            +K
Sbjct: 1275 MK 1276


>gi|147917349|ref|YP_001218832.1| DNA polymerase [Pseudomonas phage 119X]
          Length = 801

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 82/515 (15%), Positives = 149/515 (28%), Gaps = 76/515 (14%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLAR--TNGLPSSLKNAC 113
            LQ +    +    HN L++       +        WI  T  L+    + L   +   C
Sbjct: 223 FLQMVMRSDIPKCFHNGLYDSF---HLMRYHAAPNNWIFDTMGLSHSWYSELSKDVGFLC 279

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L +     K    +   A    G I+S         H+    L       D+      
Sbjct: 280 SWLLYDHKEWKYMADREHKAI---GGIESYWKYAAYDTHMMMRALIELLKNGDI-WMLRN 335

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +K+  PL         L       G++++ +  LKL E   +  +   +D+  +TD    
Sbjct: 336 YKKQFPLV-----YPSLYGAFE--GFKVNNETRLKLVEKAEERLESALKDLRIMTDDPEF 388

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG-----SA 288
           +      +  +L+ + G      ++   K+         +A    +  L S         
Sbjct: 389 NPGSPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAF--VASQHPIFALFSDRVNNYSLE 446

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              L+T       + RL  +L  +G + TGR++                +I  Q + A  
Sbjct: 447 KKALSTYFSFRQWNSRLLYSLDPFG-TDTGRFASRA------SAAWIGTQIQNQPVYAKE 499

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA----- 403
             E                    +G      D +  EA   A+++     IKA       
Sbjct: 500 MYE------------------PDDGYIAFEMDFSKAEAICTAYLSRCSALIKALCFPDLD 541

Query: 404 ---NGEDIYVTTYAKAFNTPIDKVSKEQRAIG-KVMELALGYQGGAKVFKTMASHCGLDL 459
              N +D Y       F+   + V+KE R    K +     Y  G               
Sbjct: 542 NEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGP-------------- 587

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           + F  N+    T        +  L +       A K+K      + +  A+      V Q
Sbjct: 588 ETFIDNLDDIQTL----FLAAKILGVVLTLNPKAPKEKTPKDFAKQLLDAYHIPFPEVQQ 643

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            W+ +        +    I+             + 
Sbjct: 644 WWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKK 678


>gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
 gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
          Length = 555

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 87/279 (31%), Gaps = 47/279 (16%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L + I     G   +     ++    F   G+D+       +K  L H     L 
Sbjct: 205 RRLAELADRITAAFGGRAVNPDNPASIVR-AFAREGVDVPSARAWVIKE-LDHPAAEPLL 262

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               L RL  +        +  +A  +DGR R      G   +GRW+        +PR  
Sbjct: 263 AYKELARLWVAHGW-----SWLDAWVADGRFRPDYVVGGVV-SGRWATRGGAALQIPR-- 314

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+ + A  G +LV AD A +E RVLA ++ 
Sbjct: 315 ----------------------------SLRTAVRADPGWRLVAADAAQLEPRVLAALSR 346

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +      D+Y T  A +F+          R   K+  L+  Y G +     + + 
Sbjct: 347 DRRLAEVAGED-DLYTTLAADSFH--------GDRGQAKIAMLSAMYGGTSGGAAELLAV 397

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                      V+  +   +        L      P  A
Sbjct: 398 LRRRFPDAVGYVERAAREGERGGVVRSRLGRTSPAPSQA 436


>gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1]
 gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1]
 gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W]
          Length = 286

 Score = 84.4 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R++     +   +++F NGEDI+  T +  +N P+++V+KE+R   K +   L +    
Sbjct: 1   MRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGES- 59

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
               + A    +++ +  +  +    F+     ++    + +   ++   D + G
Sbjct: 60  --PFSFAGKNNMEVSEAEEIFE--KYFQTKPSVKTSIDNVHEFVQQYGYVDTMHG 110


>gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool]
          Length = 1235

 Score = 84.4 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 91/334 (27%), Gaps = 80/334 (23%)

Query: 252  DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
            +    ++   ++     ++   A+D              + N                  
Sbjct: 856  ERKGKAKDGEENSEGSISLADAARDYPALYPTKHPRVFTRWN------------------ 897

Query: 312  YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV------- 364
               + TGR S      QN+P+      + + T  + +   +        S          
Sbjct: 898  QTRTVTGRLSSSYPNLQNIPKVMVLPSLSSLTSSSSSCSSSSPSSDVSPSSPSSSRLRYT 957

Query: 365  -------RSCI---IASNGKKLVVADLAGIEARVLAWIAGEDWKI--------------- 399
                   R      +      +V AD A IE R+LA   G+                   
Sbjct: 958  LPKTVNCREAFRDDVQDGSAVVVAADYAQIEMRLLAHFCGKGPLQSLLTGRDTREARGSA 1017

Query: 400  -----KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450
                 +      D+Y    A     P  +V+KE R   KV  LAL Y  G    A+    
Sbjct: 1018 PDDESETSKEPIDLYREMAALYAEIPPSQVTKELRDKVKVTCLALIYGSGTCTIARQMNI 1077

Query: 451  MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489
              +       +F       S F                         +A+S+   ++   
Sbjct: 1078 SLAAASAFRSKFLFVFPDVSHFIRSIVAKGREDGFVTTLTGRRRYIPEAKSNSSHVRALG 1137

Query: 490  PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
               +V   + G+A +++K A       +L    D
Sbjct: 1138 ERLSVNSCIQGSASDIMKIAMMRLQAELLSFPWD 1171


>gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 111/343 (32%), Gaps = 49/343 (14%)

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +  + ++L  E  ++  E   E+ +   PL      +W   Q + +   +     V   +
Sbjct: 95  DERKGYELLAELKEKVHEIVLEVREVFKPLP-----VWKSLQVLKNPLKKDGNPSVAYQK 149

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL---KSILSH 267
           +L        D D     D    +      +  YL            +G++   + +L+ 
Sbjct: 150 QLDRGAHYDSDGD-WGYKDYPEFNLGSRQQVSRYLQHFGWSPTEWTDKGSVIVNEKVLAD 208

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
            +I + AK ++     S   A++K     EAV  DGR+ G +   GA  TGR +      
Sbjct: 209 VDIPE-AKMIMEYFTISKRVAMVK--AWLEAVGDDGRIHGRVNSCGAV-TGRMTHSKPNL 264

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
             +P                     I  P G      R   I   GK LV  D +G+E R
Sbjct: 265 AQVP--------------------AIYSPYGEEC---RELWIVPEGKCLVGIDASGLELR 301

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +LA    +        NG DI+  T  +           + R   K    A  Y GG   
Sbjct: 302 MLAHYMNDKDYTDEILNG-DIH--TANQL------AAGLQSRDQAKTFIYAFLYGGGDGK 352

Query: 448 FKTM----ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
              +    A        +F  N  +           S   WM+
Sbjct: 353 IGEIVGGKAKDGQRLKAKFLDNTPALRELRGEVDRGSSKGWMK 395


>gi|312195229|ref|YP_004015290.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
 gi|311226565|gb|ADP79420.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
          Length = 586

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 92/290 (31%), Gaps = 64/290 (22%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELI------------AQERKKLDEDIVKLTD 229
             E    +L + +   G  +D          I            A  R +    + +L+ 
Sbjct: 197 RAESAAEVLARELERDGLPVDRPTATATITEIIGPPPVGDAGEAAARRTRDAPVLRQLSS 256

Query: 230 GI-IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGS 287
            + +R+     A         GID+ D   G L+++  +H  I +L       R+A++  
Sbjct: 257 SVDLRNPASVRA----ALAAVGIDVPDTRSGRLRALSAAHPVIDELLAWRKAERIATTYG 312

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                  L+  V +DGRLRG       +  GR +       NLP                
Sbjct: 313 ----HRWLATHVGADGRLRGRWHGSDGAA-GRMTA-DAGLHNLP---------------- 350

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R  ++A  G + V ADL  IE RVLA ++G+    +A     D
Sbjct: 351 --------------AEMRVAVVAEPGHRFVRADLGQIEPRVLAVVSGDPELTRATRQD-D 395

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +Y    A+             R   KV  LA  Y                
Sbjct: 396 LYAPVAARL-GVD--------RPTAKVAVLAAMYGQTTGAAGQALRQMRE 436


>gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
 gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
          Length = 592

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 106/359 (29%), Gaps = 79/359 (22%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQE---------LIAQERKKLDEDI---VKLTDG 230
            E    LL   ++  G  +D  +  ++              + R +   D      L   
Sbjct: 216 AESAAALLAVELSRTGLPVDRAVAERIVADAVGPRPGDAGEEARSRAVRDAPVHEHLGRV 275

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
            +R+  Q  A    L    G D+ D     L+ +   H  +  L       RLA++    
Sbjct: 276 DLRNPAQVLAALRGL----GFDVPDTRAWRLERLREAHPGVAALLAWRKAERLATTYG-- 329

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L E V +DGRLRG      A+  GR +       NLP                  
Sbjct: 330 --YRWLDEHVGADGRLRGEWSGADAAA-GRMTAQ-AGLHNLP------------------ 367

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R  + A  G  LV ADL  +E RVLA ++G+   + A  +  D+Y
Sbjct: 368 ------------SELRPAVAAEPGHVLVRADLGQVEPRVLAAVSGDAGLVAATRDD-DLY 414

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
               A              R   KV  LA  Y   +                    +++ 
Sbjct: 415 APVAAAL-GVD--------RPTAKVAVLAAMYGQTSGAAGEALRRMERAYPTALGYLRAA 465

Query: 470 ---------------STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                + A +           FA    + G A EL K AW A 
Sbjct: 466 ELAGLEGRDVRTYGGRLVRISDLAPAEPGAATAARGRFARNAVVQGAAAELFK-AWAAA 523


>gi|71735368|ref|YP_276338.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555921|gb|AAZ35132.1| DNA polymerase I domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 512

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 112/358 (31%), Gaps = 65/358 (18%)

Query: 137 KGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLI------PLSDGERDLWL 189
           K  I     +   ++ V+ +  +F +    D    R + + ++           E + W 
Sbjct: 90  KTDISGALQNFADSDTVKHYIDIFNKKAPIDENVLRTIGEAMLNQSSKLEADAKENNEWE 149

Query: 190 LDQTIND-----------RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
               I              G  ID   +   +E I  +     +      +  +      
Sbjct: 150 RFTKIERPVAEYLISSAAAGIAIDSARLRVHKENIEFDYYMALKKFSAEYNLPLELPSND 209

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
               ++     G D   +    + + +  ++    A DL+  R  +    +L    LS+ 
Sbjct: 210 D--IVHRLEPLGYDFSGVDVDYVLNFVPMND--NFAIDLLNLRKIAKSRNVLNAIPLSQK 265

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
                R+   +  +G S T R        QNL +                          
Sbjct: 266 -----RIFPIVDCFG-SITSRIYFKDPSLQNLAKHH------------------------ 295

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 R+ +I  +GK     D    EA ++A ++ ++  +  +A+G D+Y    +  F 
Sbjct: 296 ------RNILIPDDGKVFSYVDYEQYEAGIMAALSNDETLLTLYADG-DLYKQVASGIFQ 348

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                  +E+R   K + L+  Y    +     A   G D +      K   TFE W+
Sbjct: 349 ------DEERRKEAKRLFLSYAYGMKNRHLIDAAFGYGADRRLTKDFFKRFETFEKWK 400


>gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054]
          Length = 562

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 86/277 (31%), Gaps = 47/277 (16%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
            +  +L  ++ +       +      +    F   G+ L       LK++  H     L 
Sbjct: 213 AKLAELALEVQRALGARPFNLDSHTQVIK-AFADRGVQLSSTRSWELKAV-DHPAAALLV 270

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L+RL ++            A +  GR R      G   TGRW+        +PR  
Sbjct: 271 RYKELSRLHAAHGW-----AWQAAWARGGRFRPEYVVGGVV-TGRWASRGGGALQIPRT- 323

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G  LVVAD A +E RVLA ++G
Sbjct: 324 -----------------------------LRRAVVADPGWLLVVADAAQLEPRVLAALSG 354

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +  A G D+Y    A AF+          R   K+  L   Y         + + 
Sbjct: 355 DAGLART-AAGGDLYAALAASAFH--------GDREQAKLGLLGAMYGQTGGGIGPLLNT 405

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                      V++ +   +     +  L      P 
Sbjct: 406 LRRRYPDAMGYVEAAARTGEDGGVVASRLGRVCPPPS 442


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
            Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
            strain Friedlin]
          Length = 1429

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 43/216 (19%)

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            +  DGR+   +    A+ T R        QN+P+ ++S                      
Sbjct: 1064 LHRDGRVHQHIDM-TATTTSRTVSAYPSCQNIPKDDKS---------------------- 1100

Query: 359  LASDCVRSCIIASNGKK--LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 VR   ++  G K   V  D + +E  VLA +  +        +G D +V   A  
Sbjct: 1101 ----SVRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTNDLNSGVDFHVKRAAFF 1156

Query: 417  FNTPIDKVSKE----------QRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
               P D++ +            R   K       Y  G     K            +Q+ 
Sbjct: 1157 SGLPYDEIYQGYKRNVPKYVKLRRTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRE 1216

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            ++     + F    ++ +           F  +   
Sbjct: 1217 NEEYPGIAQFHRIIRSVALRPNNPGLPTSFIAEMPT 1252


>gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush]
 gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush]
          Length = 609

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 166/541 (30%), Gaps = 95/541 (17%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK--------NACLALNFS- 119
           V HN+ F+         ID    R I  +VL      P S           AC       
Sbjct: 100 VFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGL 159

Query: 120 -------EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD-VE--- 168
                  E   K    K +   +   +ID+P Y         A  L     +R  VE   
Sbjct: 160 VDVAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTT 219

Query: 169 --------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                   AT E  + L  L   E   W++ Q  + RG  +D D + + +E    +R + 
Sbjct: 220 SHPFAEFGATTE-AEALEVLEVQEIAHWVMLQR-SARGLAVDRDYLDEYREREHDKRLEH 277

Query: 221 DEDI--VKLTDGIIRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNITQLAKD 276
              +    L  G  +      AL  +L     +  D     +G   +   H         
Sbjct: 278 AAFLAQYDLEGGTGKGP----ALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVA 333

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                LA S   +  L  +S   +  GR    +   GAS TGR S    + Q  P+  R 
Sbjct: 334 AAQRALAQSDKVLGYLEKVSRQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDARP 393

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                          II  +G+ L   D A IE   +A +AG+ 
Sbjct: 394 -------------------------------IIVDDGQGLTSVDWAQIEPVTMALMAGDR 422

Query: 397 WKIKA-FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
             +   F N  D+Y          PI +     R + KV+ LA  Y  GA+       H 
Sbjct: 423 EFLAPFFENDADLYE---------PIMRACGIDRPMAKVILLATMYGQGARSMARRIGHT 473

Query: 456 GLD----LQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFAVKDKLIG 500
                   +Q    + ++  F    ++ +             L +  Q    AV     G
Sbjct: 474 EESAAQIRRQMLAAMPASRDFMAKVESIAITHGRIVTGGGRILPVDQQGSYRAVNYICQG 533

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV-PRLVMRRHKRDVH 559
           +A +++        +  L     L      VV    +     +    P  + R  KRD  
Sbjct: 534 SAYDVLAHTIVRLDEAGLSGHVQLAMHDELVVDTDVAAEVEHIMMTPPEFLTRWAKRDDF 593

Query: 560 I 560
           +
Sbjct: 594 M 594



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFE-------DWEQAESHHLWMQDQYPEFAVKD 496
           GA     M S+   +LQQF ++ +     +       DW Q E   + +     EF    
Sbjct: 370 GASATGRM-SYGSPELQQFPKDARPIIVDDGQGLTSVDWAQIEPVTMALMAGDREF--LA 426

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                  +L +   RA                A +  +G    ARR+ +      +  ++
Sbjct: 427 PFFENDADLYEPIMRACGIDRP---MAKVILLATMYGQGARSMARRIGHTEESAAQIRRQ 483

Query: 557 DVHIVLPSSRRLVYSD----VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
            +  +  S   +   +      G           + ++ +Y  +    I Q  + D+L  
Sbjct: 484 MLAAMPASRDFMAKVESIAITHGRIVTGGGRILPVDQQGSY--RAVNYICQGSAYDVLAH 541

Query: 613 GMKNATKNGYDIVLTV----HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAK 659
            +    + G      V    HDE+V +T          +  +M   P     WAK
Sbjct: 542 TIVRLDEAGLS--GHVQLAMHDELVVDTDV-----AAEVEHIMMTPPEFLTRWAK 589


>gi|289624730|ref|ZP_06457684.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 517

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 47/297 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  ER +     +    G  ID   +   +E I  +     +      D  +       
Sbjct: 151 YTTVERPVADYLISSAAAGIAIDTTRLRIHKENIEFDYYMALKQFSAKYDVPLELPSNDD 210

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            +R       G D + +    + + +  ++    A DL+  R  +   ++L    LS+  
Sbjct: 211 IIRRL--EPMGYDFLGVDVEYVLNFVPMND--NFAIDLLRLRKIAKSRSVLNAIPLSQK- 265

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               R+   +  +G S T R        QNL +                           
Sbjct: 266 ----RIYPIVDCFG-SITSRIYFKDPSLQNLAKHH------------------------- 295

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                R  ++   G+     D    EA ++A ++G++  ++ +A+G D+Y       F  
Sbjct: 296 -----RDILVPDEGRAFSYVDYEQYEAGIMAALSGDEKLLELYADG-DLYKQVANDIF-- 347

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                 + +R   K + L+  Y    +     A   G D +      K    FE+W+
Sbjct: 348 ----EGEGRRKEAKRLFLSYAYGMKNRHLIDAAFGYGADRRATKTFFKQFGKFEEWK 400


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 100/305 (32%), Gaps = 57/305 (18%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER----------KKLDEDIV 225
           R+  L   E    L+   +N  G     D+  ++   +  ER           +L E++ 
Sbjct: 157 RMRLLLTSESAGMLVAAEMNAAGLPWRADIHREVLRELLGERYPGGGEPTRLAELAEEVS 216

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   GI +       ++S L H  +  L +   L R+  +
Sbjct: 217 AAFGHRVRPDLPADVVKA--FARAGIRVGSTRRWEIQS-LDHPAVRPLLEYKRLYRIWVA 273

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  + L   V  DGR R     +G + TGRW         +P+             
Sbjct: 274 HG----WSWLQNWV-RDGRFRPEFHAHG-TVTGRWVTNGGGALQIPK------------- 314

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G  LVVAD A +E RVLA I+ +   ++  A  
Sbjct: 315 -----------------VIRRAVVADPGHCLVVADAAQLEPRVLAAISRDPGLMEVAARA 357

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D+Y +   +AF           RA  K+  L   Y           +       +    
Sbjct: 358 DDLYQSVSERAF--------SGDRAQAKLAVLGAIYGQTKGDGLKNLAALRRRFPRAVAY 409

Query: 466 VKSTS 470
           V   +
Sbjct: 410 VDEAA 414


>gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 111/350 (31%), Gaps = 63/350 (18%)

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER---DLWLLDQTINDRGYRIDLDLVL 207
           N  QA +L  E   + +    E+     P    ++        D  ++ RG         
Sbjct: 95  NTQQAMELLAELKAKQLAVEDEVHSTFKPKLVDDKLVTPYVKKDGELSKRGMT------- 147

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGT 260
              E   +  K    +       +  +      +  YL     I             EGT
Sbjct: 148 --DEEYDRCIKTQSVEPFMRQKLVDFNLGSRKQIGEYLIDFGWIPKKFTPTGQPIVDEGT 205

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           LK I        +A  L+  +  +  ++  +++ L      D R+ G++   G + TGR 
Sbjct: 206 LKKIEHIREAKLIADFLLYQKRIAQVTS--RIDELK-----DDRVHGSVIPNG-TITGRM 257

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +        +P                       +         RSC     G+KLV  D
Sbjct: 258 THRNPNMAQVP-----------------------NAGSPYGKECRSCWTIPEGRKLVGID 294

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            +G+E R+LA    +   I+   NG DI+         T  +    + R   K    AL 
Sbjct: 295 ASGLELRMLAHYMNDPEYIEEVVNG-DIHT--------TNQNLAGLKTRDQAKTFIYALV 345

Query: 441 YQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           Y  G     ++A           Q F +N+ S    ++  Q  S   +++
Sbjct: 346 YGAGDAKIGSVAGGGLKKGKELKQTFFKNLPSLKNLKEKVQKASERGYLK 395


>gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis]
 gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis]
          Length = 758

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 90/267 (33%), Gaps = 46/267 (17%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
           N  G +ID++   +L+    ++       +         +      +  Y++ I G    
Sbjct: 82  NFEGLQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIFGASKP 141

Query: 255 DMSEGTLKSILSHSNITQLAKDLILN-----RLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            + +   KS     N+  +A+   L       + +   A   + T  + +   GRL   L
Sbjct: 142 KIGKS--KSGTDEKNLLAVAEQHPLLARLTTDILAYREAQKAIGTYYDFLRFQGRLLWAL 199

Query: 310 QFYGASRTGRWSG------CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
             +G + T R +       C  Q QN+P                                
Sbjct: 200 NPFG-TETERMACSASSLWCGTQVQNIP------------------------------SY 228

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPID 422
            +  ++A +G +L  AD +  E R  A+ A E   I A    G D Y T     FN P +
Sbjct: 229 AKQMLVADDGYELFEADNSQSEGRTTAYCAQEPALIAALETAGRDFYRTLGTLFFNIPYE 288

Query: 423 KVSKEQRAIG-KVMELALGYQGGAKVF 448
           +V+   R    K +     Y  G K F
Sbjct: 289 EVTDFFRNKVLKRIVHGTNYMMGGKTF 315


>gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1171

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 81/301 (26%), Gaps = 83/301 (27%)

Query: 315  SRTGRWSGCVFQPQNLPRQERSEEILTQTIQA-----------LNRGETIADPLGLASDC 363
            + TGR    +   QN+P+Q         T+ A           L     +  P       
Sbjct: 810  TSTGRIFSSLPNVQNVPKQPPRTAFPIHTLSATPSRNSGGDESLRHYSYVDPPTEEDVAR 869

Query: 364  ----------------------------VRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        +R    A  G  L   D   +E R+LA ++G+
Sbjct: 870  WLALAEAALVDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGD 929

Query: 396  DWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGG---------- 444
                +  +   D+     A     P ID V  +QR   KV+   L Y  G          
Sbjct: 930  AALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKK 989

Query: 445  ------------------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
                              A             L++F        ++    + E+   +  
Sbjct: 990  INEEFATSEQQQHHRGGEASSPGPAPMSAHDLLRRFHHVYPRIESYLRETRQEALRSFAV 1049

Query: 487  ---------------DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                           ++  + A+   + G A +++  A RA HQ        L      +
Sbjct: 1050 ETLSGRKSLIAEKDANRRRQRAIAQAVQGGAADVLHSAMRAVHQQRHSFLPYLPAATLAL 1109

Query: 532  V 532
            V
Sbjct: 1110 V 1110


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 43/216 (19%)

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            +  DGR+   +    A+ T R        QN+P+ ++S                      
Sbjct: 1065 LHRDGRVHQHIDM-TATTTSRTVSAYPSCQNIPKDDKS---------------------- 1101

Query: 359  LASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 VR   ++  G   + V  D + +E  VLA +  +        +G D +V   A  
Sbjct: 1102 ----SVRRLFVSRFGSQGRCVEVDYSQLEIVVLAILCNDANLTHDLNHGVDFHVKRAAFF 1157

Query: 417  FNTPIDKVSKE----------QRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
               P D++ +            R   K       Y  G     K            +Q+ 
Sbjct: 1158 SGLPYDEIYQGYKRNVPKYVKLRRTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRE 1217

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            ++     + F    ++ +           F  +   
Sbjct: 1218 NEAYPGIAQFHRTIRSVALRPNNPGLPTSFIAEMPT 1253


>gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1171

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 100/317 (31%), Gaps = 59/317 (18%)

Query: 306  RGTLQFYGASRT-GRWSGCVFQPQNL-----PRQERSEEILT-QTIQALNRGETIADPLG 358
            R T   +  S T  R SG     +       P +E  +  L+     A+++  ++  PL 
Sbjct: 833  RTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLAEAAAVDQASSVQFPLF 892

Query: 359  LASDC--VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
              +    +R    A  G  L   D   +E R+LA ++G+    +  +   D+     A  
Sbjct: 893  PENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASV 952

Query: 417  FNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD----------------- 458
               P ID V  +QR   KV+   L Y  G +           +                 
Sbjct: 953  LRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHRGEAASSA 1012

Query: 459  ---------LQQFSQNVKSTSTFEDWEQAESHHLWMQ---------------DQYPEFAV 494
                     L++F +       +    + E+   +                 ++  + A+
Sbjct: 1013 PAPMAARDLLRRFHRVYPRIENYLRETRQEALRSFAVETLSGRKSLIAEKDANRRRQRAI 1072

Query: 495  KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--------SISARRVANV 546
               + G A +++  A RA HQ        L      +V             ++   V   
Sbjct: 1073 AQAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSIHDELVYAVPRVAIEEVVRG 1132

Query: 547  PRLVMRRHKRDVHIVLP 563
             + ++    R + + +P
Sbjct: 1133 VQRILEDQARVLRLAVP 1149


>gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major
            strain Friedlin]
 gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
          Length = 1170

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 100/355 (28%), Gaps = 89/355 (25%)

Query: 315  SRTGRWSGCVFQPQNLPRQERSEEILTQTIQA-----------LNRGETIADPLGLASDC 363
            + TGR    +   QNLP+Q          + A           L     I  P     + 
Sbjct: 811  TSTGRIFSALPNVQNLPKQPPRTMFPIHALSATPSRNSGGDESLRPYSHIDPPTEEDVER 870

Query: 364  ----------------------------VRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        +R    A  G  L   D   +E R+LA ++G+
Sbjct: 871  WLSLAEAAAVDQASPAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGD 930

Query: 396  DWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKT---- 450
                +  +   D+     A     P ID+V  +QR   KV+   L Y  G +        
Sbjct: 931  AALQEHLSANVDVLALVTASVLRLPSIDRVRPQQRQAVKVVVYGLLYGMGLESMDVRIKK 990

Query: 451  -----MASHCGLDLQQFSQNVKSTSTFED--------WEQAESHHLWMQDQY-------- 489
                  AS       + S +  +     D        + + ES+    + +         
Sbjct: 991  INEEFAASEQQQHRGEASSSAPAPMPARDLLRRFHRVYPRIESYLRETRQEALRSFAVET 1050

Query: 490  ----------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                             + A+   + G A +++  A RA HQ        L      +V 
Sbjct: 1051 LSGRKSLIAEKDANRRKQRAIAQAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVM 1110

Query: 534  EGG--------SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                        ++   V    + ++    R + + +P    +   +  G+ +  
Sbjct: 1111 SIHDELVYAVPRVAIDEVVRGVQRILEDQARVLRLAVPLPVSVRVGNCFGELAEF 1165


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 100/304 (32%), Gaps = 51/304 (16%)

Query: 196 DRGYRIDLDLVLK--LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +R   +  +L+ +        +   +L E++ +     +R       LR   F  +G+ L
Sbjct: 198 ERHRELLRELLGERYAGGGEPRRLAELTEEVSRAFGRHVRPDLPADVLRA--FAESGVKL 255

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
                  L+ +  H  +  L     L R+ ++         L++ V   GR R      G
Sbjct: 256 TSTRRWELEKV-GHPAVAPLLAYKKLYRVWTAHG----WGWLADWVRE-GRFRPRYVVGG 309

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  +GRW+        +P+                               VR  ++A  G
Sbjct: 310 AV-SGRWTTAGGGALQIPK------------------------------VVRRAVVADPG 338

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            +LVVAD A +E R+LA +AG+   +   A  +D+Y     +AF           R   K
Sbjct: 339 WRLVVADAAQMEPRILAAVAGDAGLLDVAAKADDLYAAVSDRAF--------AGDRDRAK 390

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           +  L   Y   +       +       +    V   +   +  +      W+    P   
Sbjct: 391 IAVLGAIYGQTSGDGLKNLAALRRRFPKAVAYVDEAARAGEEGRLV--RTWLGRTCPPVG 448

Query: 494 VKDK 497
            +D 
Sbjct: 449 GEDP 452


>gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 668

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 82/258 (31%), Gaps = 36/258 (13%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           Q+ ++L E I ++      +      L   L    G+ +       LKS        +  
Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRDK 357

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +  +++        IL+   L    +++G                W+           + 
Sbjct: 358 RWALID-------PILRYKKLYRIWTANG--------------WTWADTWVS------EG 390

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                L     A  R              +R  + A  G+ L V D + IE R+LA ++ 
Sbjct: 391 AFRPHLEVGGAATGRWGASGGGALQLPAEIRQAVQAPEGQVLTVTDGSQIEPRILAALSR 450

Query: 395 EDWKIKAFANGEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           ++    A   G D+Y      A+     + +     R+  KV  LA+ Y G +     + 
Sbjct: 451 DEALASAGR-GADLYAGIAELARLKGVGLTE-----RSHAKVGMLAIMYGGRSGEIGALL 504

Query: 453 SHCGLDLQQFSQNVKSTS 470
            H      Q  +  +  +
Sbjct: 505 PHVAALFPQAMEFTERAA 522


>gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 117/387 (30%), Gaps = 80/387 (20%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGER------DLWLLDQTI----NDRGYRIDLDLV 206
           +    YCK+DV+ T  L+  L  L +GE       +L  +   I       G+ +D DL 
Sbjct: 42  EEMKAYCKQDVKVTELLYNTL--LKEGEAFSQASINLEHMVHAIMCEQQANGFELDTDLA 99

Query: 207 LKLQELIAQERKKLDEDIVK---------------------------LTDGIIR------ 233
            ++  +  +E  +++ +I +                           L    ++      
Sbjct: 100 QEIYTVCLKETLRIETEIKEFMVPIAVPVKEVTIKRKKDGAIFANQLLEGCNVQGDYTKI 159

Query: 234 -----SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG-- 286
                +      +   L    G +    ++      +   N+  +  D            
Sbjct: 160 MWEEFNLGSPTQINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGLKAWK 218

Query: 287 ---SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
              +         E    DGR+ GT+   GA  T R +       N+P           +
Sbjct: 219 VLETRWKLAQEWLEKSQGDGRVHGTVITTGAV-THRAAHRGPNMANIP-----------S 266

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
           +     G         A++C R       G+ LV  D AGI+ RVLA    +    +   
Sbjct: 267 VPHNKDGIFWKMDGMYAAEC-RQVFKVPEGRLLVGTDAAGIQLRVLAHYMNDPVYTEQVI 325

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDL 459
           +G DI+       FN        + R   K    A     G      +         + +
Sbjct: 326 DG-DIHT------FNMNALGRHCKDRPTAKTFIYAFLLGAGVGKIAEILGCNGGQANVAM 378

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           + F + + +    +      +   W++
Sbjct: 379 KNFYEALPTLKRLKSEASRAASMGWLK 405


>gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula]
 gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula]
          Length = 600

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 138/438 (31%), Gaps = 82/438 (18%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK--------NACLALNFS- 119
           V HN+ F+         ID    R I  +VL      P S           AC       
Sbjct: 91  VFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGL 150

Query: 120 -------EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD-VE--- 168
                  E   K    K +   +   +ID+P Y         A  L     +R  VE   
Sbjct: 151 VDVAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTT 210

Query: 169 --------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                   AT E  + L  L   E   W++ Q  + RG  +D D + + +E    +R + 
Sbjct: 211 SHPFAEFGATTE-AEALEVLEVQEIAHWVMLQR-SARGLAVDRDYLDEYREREHDKRLEH 268

Query: 221 DEDI--VKLTDGIIRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNITQLAKD 276
              +    L  G  +      AL  +L     +  D     +G   +   H         
Sbjct: 269 AAFLAQYDLEGGTGKGP----ALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVA 324

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                LA S   +  L  ++   +  GR    +   GAS TGR S    + Q  P+  R 
Sbjct: 325 AAQRALAVSDKVLGYLEKVARQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDARP 384

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                          II  +G+ L   D A IE   +A +AG+ 
Sbjct: 385 -------------------------------IIVDDGQGLTSVDWAQIEPVTMALMAGDR 413

Query: 397 WKIKA-FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
             +   F    D+Y          PI +     R + KV+ LA  Y  GA   ++MA   
Sbjct: 414 EFLAPFFEKDADLYE---------PIMRACGIDRPMAKVILLATMYGQGA---RSMARRI 461

Query: 456 GLDLQQFSQNVKSTSTFE 473
           G   +  +Q  +      
Sbjct: 462 GHTEESAAQIRRQMLAAM 479



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFE-------DWEQAESHHLWMQDQYPEFAVKD 496
           GA     M S+   +LQQF ++ +     +       DW Q E   + +     EF    
Sbjct: 361 GASATGRM-SYGSPELQQFPKDARPIIVDDGQGLTSVDWAQIEPVTMALMAGDREF--LA 417

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                  +L +   RA                A +  +G    ARR+ +      +  ++
Sbjct: 418 PFFEKDADLYEPIMRACGIDRP---MAKVILLATMYGQGARSMARRIGHTEESAAQIRRQ 474

Query: 557 DVHIVLPSSRRLVYSD----VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
            +  +  S   +   +      G           + ++ +Y  +    I Q  + D+L  
Sbjct: 475 MLAAMPASRDFMAKVESIAITHGRIVTGGGRILPVDQQGSY--RAVNYICQGSAYDVLAH 532

Query: 613 GMKNATKNGYDIVLTV----HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAK 659
            +    + G      V    HDE+V +T          +  +M   P     WAK
Sbjct: 533 TIVRLDEVGLS--GHVQLAMHDELVVDTDV-----AAEVEHIMMTPPEFLTRWAK 580


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 43/216 (19%)

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            +  DGR+   +    A+ T R        QN+P+ ++S                      
Sbjct: 1065 LHRDGRVHQHIDM-TATTTSRTVSAYPSCQNIPKDDKS---------------------- 1101

Query: 359  LASDCVRSCIIASNGKK--LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 VR   ++  G K   V  D + +E  VLA +  +    K   +G D +V   A  
Sbjct: 1102 ----SVRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFF 1157

Query: 417  FNTPIDKVSKE----------QRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
               P D++ +            R   K       Y  G     K            +Q+ 
Sbjct: 1158 SGLPYDEIYQGYKRNVPKYVKLRKTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRE 1217

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            ++     + F    ++ +           F  +   
Sbjct: 1218 NEEYPGIAQFHRIIRSVALRPNNPGLPTSFIAEMPT 1253


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 43/216 (19%)

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            +  DGR+   +    A+ T R        QN+P+ ++S                      
Sbjct: 1064 LHRDGRVHQHIDM-TATTTSRTVSAYPSCQNIPKDDKS---------------------- 1100

Query: 359  LASDCVRSCIIASNGKK--LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 VR   ++  G K   V  D + +E  VLA +  +    K   +G D +V   A  
Sbjct: 1101 ----SVRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFF 1156

Query: 417  FNTPIDKVSKE----------QRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
               P D++ +            R   K       Y  G     K            +Q+ 
Sbjct: 1157 SGLPYDEIYQGYKRNVPKYVKLRKTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRE 1216

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            ++     + F    ++ +           F  +   
Sbjct: 1217 NEEYPGIAQFHRIIRSVALRPNNPGLPTSFIAEMPT 1252


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            infantum JPCM5]
          Length = 1430

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 43/216 (19%)

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            +  DGR+   +    A+ T R        QN+P+ ++S                      
Sbjct: 1065 LHRDGRVHQHIDM-TATTTSRTVSAYPSCQNIPKDDKS---------------------- 1101

Query: 359  LASDCVRSCIIASNGKK--LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 VR   ++  G K   V  D + +E  VLA +  +    K   +G D +V   A  
Sbjct: 1102 ----SVRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFF 1157

Query: 417  FNTPIDKVSKE----------QRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462
               P D++ +            R   K       Y  G     K            +Q+ 
Sbjct: 1158 SGLPYDEIYQGYKRNVPKYVKLRKTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRE 1217

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            ++     + F    ++ +           F  +   
Sbjct: 1218 NEEYPGIAQFHRIIRSVALRPNNPGLPTSFIAEMPT 1253


>gi|296130861|ref|YP_003638111.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
 gi|296022676|gb|ADG75912.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
          Length = 570

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 90/290 (31%), Gaps = 47/290 (16%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +  ++L   I +L      +      L   L    G  L   S+  ++  L H  +  L 
Sbjct: 217 RRLEELVTTIRELLADPHLNPDSQPHLLAAL-RRQGFSLSSTSKWEVRE-LDHPVVAPLL 274

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L+RL S+           ++   DGR R      G   TGRW+        LP   
Sbjct: 275 EYKKLSRLLSANGW-----AWLDSWVRDGRFRPAYVVGGVV-TGRWATDGGGALQLP--- 325

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+   A +G +LVVAD A +E RVLA ++G
Sbjct: 326 ---------------------------ASLRAAARADDGWRLVVADAAQLEPRVLAAMSG 358

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +     A   G D+Y            D  +   R   K   L   Y         +   
Sbjct: 359 DRAMADAAR-GSDLYQRIA--------DAGTVPTRTDAKYALLGAIYGATTGSAGMLMPR 409

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                 Q    V++ +   +  +  S  L         A  D+L     E
Sbjct: 410 LARAYPQAVALVEAAARAGERGETVSTWLGRTSPPASAAFLDRLGAAGAE 459


>gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG]
          Length = 401

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 91/266 (34%), Gaps = 54/266 (20%)

Query: 234 SSRQTYALRMYL---------FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
           +      +  YL         F  TG  +VD  EGTLK I        +A  L+  +  +
Sbjct: 172 NLGSRKQIGEYLMDFGWEPKRFTPTGQPIVD--EGTLKKITHIHEAKPIADFLLYQKRIA 229

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              + L      +A+  DGR+ G++   G + TGR S        +P             
Sbjct: 230 QIQSWL------DALEEDGRVHGSVIPNG-TITGRMSHNHPNVAQVP------------- 269

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                   +  P G+     R+C     G  LV  D +G+E R+LA    ++  I    N
Sbjct: 270 -------AVYSPFGVEC---RACWTVEEGNVLVGVDASGLELRMLAHYMNDEEYINEVVN 319

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460
           G DI+  T  K           E R   K    AL Y  G      V             
Sbjct: 320 G-DIHT-TNQKLAGL-------ESRDTAKTFIYALVYGAGDEKIGSVVGGSRKQGKELKN 370

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +   N+ +  T ++  Q  +   +++
Sbjct: 371 RSLTNLPALKTLKEKVQQAAKRGFLK 396


>gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
 gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
          Length = 551

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 100/306 (32%), Gaps = 57/306 (18%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER----------KKLDEDI 224
           +R+  L+  E    L+   ++  G     +    L   +  ER           +L E +
Sbjct: 154 ERMRLLTASESSGMLIAAEMDRAGLPWSAETHRALLTELLGERYAGGGEPRRLTELAEQV 213

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                  +R       L+   F   G  L       L+  + H  +  L +   L R+ +
Sbjct: 214 SAAFGRRVRPDLPADVLKA--FKQAGYQLTSTRRWELQ-TIDHPAVEPLIEYKKLYRIYT 270

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +       + L++ V  DGR R      G + +GRW         +P+            
Sbjct: 271 ANG----WSWLNDWVH-DGRFRPGFVP-GGTVSGRWITNGGGGLQIPK------------ 312

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R  ++A  G +LVVAD + +E RVLA I+ +   ++   N
Sbjct: 313 ------------------VIRRAVVADPGWRLVVADASQLEPRVLAAISRDPGLMEVAGN 354

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
             D+Y     KAF           RA+ K+  L   Y   +       +       +   
Sbjct: 355 AADLYKAVSDKAF--------SGDRAMAKLAVLGAIYGQTSGDGLKNLAALRKRFPKAVA 406

Query: 465 NVKSTS 470
            V   +
Sbjct: 407 YVDDAA 412


>gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 130/427 (30%), Gaps = 81/427 (18%)

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L  S     M +G   +  +    I    Y     +  Q  +   +YCK+DV+ T  +++
Sbjct: 3   LVLSSLFNPMRKGGHSLKSWG---IRLDEYKGEFNDWSQYSEEMKQYCKQDVKVTELVYQ 59

Query: 176 RLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK- 226
            L+           D E  +  +       G+ +D +L  ++      E  +++ DI + 
Sbjct: 60  ELLKEGSKFSQASIDLEHQVHAIMCEQEANGFLLDTNLAQEIYTTCLAETTRIERDIKEF 119

Query: 227 --------------------------LTDGIIR-----------SSRQTYALRMYLFLIT 249
                                     L    ++           +      +   L    
Sbjct: 120 MVPIAVPVKEVNLKYKKDGSIFANQLLEGCNVQGDYTKIMWEEFNLASQPQINKRL-NRL 178

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL----KLNT-LSEAVSSDGR 304
           G      ++G     +   N+  +               +L    KL +   +    DGR
Sbjct: 179 GWKPTVKTKGGDSYKICPENLATIPDTAPQAVKGLKKWKVLETRWKLASEWLQGSQVDGR 238

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           + G +   GA  T R +       N+P     ++ +   +  +   E             
Sbjct: 239 VHGQVITPGAV-THRAAHRGPNMANIPSVPHGKDGILWKMDGMYAAEC------------ 285

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDK 423
           R       GK LV  D AGI+ RVLA    +    +   +G DI+       FN   + K
Sbjct: 286 RQAFTVPEGKLLVGTDAAGIQLRVLAHYMNDPVYTEQVIDG-DIHT------FNMNALGK 338

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             K+ R   K    A     G      +    A+     +Q F + + +    +      
Sbjct: 339 FCKD-RPTAKTFIYAFLLGAGVGKIAEILGCNAAQANKSMQNFYEALPTLKRLKSEAARA 397

Query: 480 SHHLWMQ 486
           +   WM+
Sbjct: 398 ASMGWMK 404


>gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum
            JPCM5]
 gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
            infantum JPCM5]
          Length = 1169

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 99/317 (31%), Gaps = 59/317 (18%)

Query: 306  RGTLQFYGASRT-GRWSGCVFQPQNL-----PRQERSEEILT-QTIQALNRGETIADPLG 358
            R T   +  S T  R SG     +       P +E  +  L+     A+++  +   PL 
Sbjct: 831  RTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLAEAAAVDQASSAQFPLF 890

Query: 359  LASDC--VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
              +    +R    A  G  L   D   +E R+LA ++G+    +  +   D+     A  
Sbjct: 891  PENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASV 950

Query: 417  FNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD----------------- 458
               P ID V  +QR   KV+   L Y  G +           +                 
Sbjct: 951  LRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHRGEAASSA 1010

Query: 459  ---------LQQFSQNVKSTSTFEDWEQAESHHLWMQ---------------DQYPEFAV 494
                     L++F +       +    + E+   +                 ++  + A+
Sbjct: 1011 PAPMAARDLLRRFHRVYPRIENYLRETRQEALRSFAVETLSGRKSLIAEKDANRRRQRAI 1070

Query: 495  KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--------SISARRVANV 546
               + G A +++  A RA HQ        L      +V             ++   V   
Sbjct: 1071 AQAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSIHDELVYAVPRVAIEEVVRG 1130

Query: 547  PRLVMRRHKRDVHIVLP 563
             + ++    R + + +P
Sbjct: 1131 VQRILEDQARVLRLAVP 1147


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 57/188 (30%), Gaps = 32/188 (17%)

Query: 342 QTIQALNRGETIADPLGLASDC--VRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDW 397
             I  L     I     L  D   VR    A    G  LVVAD   +E R+LA +     
Sbjct: 8   NAIDKLLSAFIIPLQPALEKDRYKVRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKS 67

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-----------------------RAIGKV 434
            ++AF  G D +  T    ++   D +   +                       R   KV
Sbjct: 68  MLEAFVLGGDFHSRTAVGMYDHIKDAIRDNKVLLEWDGEGESPLPLVKDLYASERRKAKV 127

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +  ++ Y    K    +A+      ++    V     + D  +        ++   +   
Sbjct: 128 LNFSIAYG---KTAHGLAADFKTSKEEAQATVD--KWYADRFEVRQWQEKTKEGARQEGK 182

Query: 495 KDKLIGTA 502
              L+G  
Sbjct: 183 VRTLLGRT 190


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 101/305 (33%), Gaps = 57/305 (18%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK----------KLDEDIV 225
           R+  L+  E    L+   +   G     D   KL + +  ER           +L E++ 
Sbjct: 160 RMRLLTTAESAGMLIAAEMRRAGVPWSADRHRKLLDELLGERYPGGLEPQRLVELAEEVS 219

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +     +R       ++   F   GI L       L+  + H  +  L +   L RL ++
Sbjct: 220 RAFGTRVRPDLPAEVVKA--FGRAGITLGSTRAWELER-IDHPAVEPLLRYKKLYRLHTA 276

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                      ++   DGR R      G + +GRW+        +P+             
Sbjct: 277 HGW-----AWLQSWVRDGRFRPEY-LPGGTVSGRWTTNGGGALQIPK------------- 317

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR  ++A  G +LVVAD   +E RVLA I+ +   ++   +G
Sbjct: 318 -----------------VVRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGSG 360

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y T   +AF          +R + K+  L   Y   +       +            
Sbjct: 361 RDLYATLSDRAF--------SGRRELAKLALLGAVYGQTSGDGLKHLAALRRRFPAAVAY 412

Query: 466 VKSTS 470
           V   +
Sbjct: 413 VDEAA 417



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRD--ILCEGMKNATK 619
             +        + + SY +TA+++        G+ T N +VQ  + D  +L       + 
Sbjct: 443 EPADEAGLPREQEEPSYGSTASARAR------GRFTRNFVVQGSAADWALLMLAALRRSL 496

Query: 620 NGY----DIVLTVHDEIVSETPDTPYFSVGT 646
            G     +IV   HDE++   P     +V  
Sbjct: 497 TGAGLRAEIVFFQHDEVIVHCPQEEADTVRE 527


>gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain
            Friedlin]
 gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major
            strain Friedlin]
          Length = 1548

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 108/375 (28%), Gaps = 80/375 (21%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+ G L     + TGR S      QN+P++E    ++     A                 
Sbjct: 1230 RVHGELCHC-VTATGRLSSQSPNLQNIPKEEDLRRLIVSRFSAQGM-------------- 1274

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                        ++ AD + +E  VLA +  +   ++   +  D +    +     P + 
Sbjct: 1275 ------------MIEADYSQLEVVVLAALCRDPRMMQELRDNIDFHCLRVSLMTKEPYED 1322

Query: 424  VSK-----------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            V +           + R   KV      Y  G     T     GL  Q+  + +   +  
Sbjct: 1323 VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTIST---TTGLTEQEVDRLI--VAEE 1377

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
              +++   ++  +  +  E      L     +     W A    + ++       +  VV
Sbjct: 1378 HHYKELSKYYS-LVTRCVEAGADRLLRLRTLDT--SLWNA---NIRRVVMLTEPMYYFVV 1431

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
              G      R       +               + L    V+  C        +  R+R 
Sbjct: 1432 PTGSKFDFTRDRKSVPRLKNY----------PVQGLAGEIVQIMC---GAIVREFYRKRN 1478

Query: 593  YGGK-LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            YG K    N V     D +                 V DE+ ++       +   + +L 
Sbjct: 1479 YGEKAFLVNTVH----DCVWVDAHKC----------VADEVCADLARIMGHTQEAIAAL- 1523

Query: 652  TKNPSWAKGLPLKAE 666
               P     +P KAE
Sbjct: 1524 --WPDMKLDVPFKAE 1536


>gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3]
          Length = 582

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 75/538 (13%), Positives = 158/538 (29%), Gaps = 118/538 (21%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D   Q  +   + Q L D  ++ V HN + ++  + +K         R + T VL+R   
Sbjct: 37  DVGTQQPITKGI-QLLEDADII-VGHNIIGYDLPVIRKLYPWFSNVGRVLDTLVLSRLY- 93

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-------RANHVQAW- 156
                       +  +   K       +  + + S+++  Y          +    + W 
Sbjct: 94  ----------HADLLKTDQKRNWKHMPVQLWGRHSLEAYGYRLGEYKGCFGKTTDWKDWS 143

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDG---ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           Q   +Y  +DV  TR+L+K    + +    E  +  +       G+  D     +L+  +
Sbjct: 144 QEMEDYMVQDVNITRKLWKDFPEIPEWVQLEHRVAQILTEQEIHGWYFDEPAAWELESTL 203

Query: 214 AQERKKLDEDIVKLTDGIIR--------------------------SSRQTYALRMYLFL 247
            +E + L   +      I+                           +      +   L  
Sbjct: 204 RRELESLKAVLRNRHPFILGEEFTPKRPNSTQGYFTGATFTRLKEMNPTSRDHIAYILQK 263

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR---LASSGS---AILKLNTLSEAVSS 301
               +  + +E     ++    +  +  ++ L     L  +         +N   + V +
Sbjct: 264 FYDWEPTERTEKGKP-VVDEIVLKDIGSEIALQFFRCLELTKQIGMLTEGVNAWLKLVRN 322

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+        A+ T R +        +P                            A 
Sbjct: 323 D-RIHHHCS--VATNTHRCAHRKPNLAQVP----------------------------AE 351

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K    
Sbjct: 352 AEFRKLFRATPGMVMVGADLAGIELRMLAHYLAQWDGGRYGDVLLNGDIHQENADKI-GI 410

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q +   +   
Sbjct: 411 S--------RRLVKTVTYAFLYGAGNQKIGLSYDQSLSPDKAKKKGQEIRQAYMDAIPGL 462

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKD-------KLIGTACELVKKAWRA-KHQGVLQ 519
               +  +  ++  +++         D        L+ ++  ++ K W A  H+ +++
Sbjct: 463 RKLVEATKKAANRGYIRAIDGRHISVDSPHKSLNYLLQSSAGVIAKRWLALTHEAIIR 520


>gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
 gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
          Length = 668

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 36/258 (13%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           Q+ ++L E I ++      +      L   L    G+ +       LKS        +  
Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRQK 357

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +  +++        IL+   L    +++G                W+           + 
Sbjct: 358 RWAMID-------PILRYKKLYRIWTANG--------------WTWADTWVS------EG 390

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                L     A  R              +R  + A  G+ L V D + IE R+LA ++ 
Sbjct: 391 AFRPHLEVGGAATGRWGASGGGALQLPAEIRQAVQAPEGQVLTVTDGSQIEPRILAALSR 450

Query: 395 EDWKIKAFANGEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           ++    A   G D+Y      A+     + +     R+  KV  LA+ Y G +     + 
Sbjct: 451 DEALASAGR-GADLYAGIAELARMKGVGLTE-----RSHAKVGMLAIMYGGRSGEIGALL 504

Query: 453 SHCGLDLQQFSQNVKSTS 470
            H      Q     +  +
Sbjct: 505 PHVAALFPQAMDFTERAA 522


>gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1]
          Length = 797

 Score = 80.6 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 113/357 (31%), Gaps = 51/357 (14%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNIT 271
             L +   +L D   R  + T   + +     G+       +  ++   +  + S + + 
Sbjct: 341 DDLSKPKSRLEDFTYRFPQMTEPKKQWEGSTPGVYSVSADVIKGLANRGIPFLESLAKVE 400

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            LAKDL    + +      +   +   V +DG +   L  + ++ T R+S      QNLP
Sbjct: 401 GLAKDLGTYYVVTD-PDTGQQKGMLTLVQADGIIHHMLN-HTSTVTARFSSSNPNLQNLP 458

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVL 389
           +  +S                           V+S  I+  G   K++ +D   +E  + 
Sbjct: 459 KDGKS--------------------------LVKSVFISRFGPEGKVIQSDFTALEVYIQ 492

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-----------KEQRAIGKVMELA 438
           A +      I    +G D++    ++A   P ++               +R   K+    
Sbjct: 493 AILTDCRQLILDLKDGLDMHCVRVSQAEGIPYEEAYRLCVVEKVKEWSTKRTKAKIFSFQ 552

Query: 439 LGYQGGAKVFKTMASHCGLDLQQF--SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             Y  GA +          ++     ++N +     + +E+     +       +FA   
Sbjct: 553 RAYGAGAALIAESTGMAREEVDALIEAENTRYPEIEKFYERLTKKIMANSVPTNKFAQHP 612

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            L    C   K  ++     +    +  +     + +   S      +  P  +   
Sbjct: 613 DLPHLTCNFRKSTYQTPDGKLYSYRE--SPAPEFLAKAPASRGGCTTSFSPTEIKNY 667


>gi|158315552|ref|YP_001508060.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158110957|gb|ABW13154.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 673

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 70/214 (32%), Gaps = 50/214 (23%)

Query: 250 GIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
           GID+ D   G L ++   H  +  L       R+A++         L   V +DGRLRG 
Sbjct: 353 GIDVPDTRSGRLSALRGVHPVVEALLAWRKAERIATTYG----YRWLDTHVGADGRLRGE 408

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            +    +  GR +       NLP                                +R  +
Sbjct: 409 WRGSDGAA-GRMTA-AAGLHNLPAD------------------------------LRVVV 436

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G + V ADL  IE RVLA ++G+    +A     D+Y    A              
Sbjct: 437 IAEPGYRFVRADLGQIEPRVLAVVSGDPELTRATRQD-DLYAPVAASL-GVD-------- 486

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           R   KV  LA  Y    +             + +
Sbjct: 487 RPTAKVAVLAAMYG---QTTGVAGQALRQMRETY 517


>gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei
            gambiense DAL972]
          Length = 1649

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 102/412 (24%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            K L   R       + +   L  AV  +   R+ G    +  + TGR S      QN+P+
Sbjct: 1300 KALQQLRFMEKQMQLFEEGALFRAVLPECKNRVHGEF-CHVVTATGRLSSQSPNLQNIPK 1358

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            ++    I+++  +   R                          ++ AD + +E  VLA +
Sbjct: 1359 EDLRCLIVSRFGRRAGR--------------------------MIEADYSQLEVVVLAAL 1392

Query: 393  AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK-----------EQRAIGKVMELALGY 441
            + +   ++   +  D +    +     P + V             + R   K       Y
Sbjct: 1393 SRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQLKDPHYIQLRQQAKTFSFQRQY 1452

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              G                                                A    L  T
Sbjct: 1453 GAGTS--------------------------------------------TIATTTGLSET 1468

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                +  A    ++ + + ++ +T+     V+ G     +             +R V + 
Sbjct: 1469 EVVRLIAAEEQHYKDLGRYYRLVTD----CVEAGADRLLQLRTLDATSWPPTMRRMVLLT 1524

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTY-GGKLTENIVQAISRDIL--CEGMKNAT 618
             P    +V     G           + R + Y    L   IVQ +   I+      +N  
Sbjct: 1525 EPMHYFVV---PTGSKFDFTKDKKAVPRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYN 1581

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPS-----WAKGLPLK 664
               + +V TVHD +  +  ++     V  + ++M+         W  G+ L 
Sbjct: 1582 DKAF-LVNTVHDCVWIDAHESVADEVVDDVSAIMSSTSEVISSLW-PGVKLD 1631


>gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927]
 gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei]
 gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1649

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 102/412 (24%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            K L   R       + +   L  AV  +   R+ G    +  + TGR S      QN+P+
Sbjct: 1300 KALQQLRFMEKQMQLFEEGALFRAVLPECKNRVHGEF-CHVVTATGRLSSQSPNLQNIPK 1358

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            ++    I+++  +   R                          ++ AD + +E  VLA +
Sbjct: 1359 EDLRCLIVSRFGRRAGR--------------------------MIEADYSQLEVVVLAAL 1392

Query: 393  AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK-----------EQRAIGKVMELALGY 441
            + +   ++   +  D +    +     P + V             + R   K       Y
Sbjct: 1393 SRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQVKDPHYIQLRQQAKTFSFQRQY 1452

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              G                                                A    L  T
Sbjct: 1453 GAGTS--------------------------------------------TIATTTGLSET 1468

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                +  A    ++ + + ++ +T+     V+ G     +             +R V + 
Sbjct: 1469 EVVRLIAAEEQHYKDLGRYYRLVTD----CVEAGADRLLQLRTLDATSWPPTMRRMVLLT 1524

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTY-GGKLTENIVQAISRDIL--CEGMKNAT 618
             P    +V     G           + R + Y    L   IVQ +   I+      +N  
Sbjct: 1525 EPMHYFVV---PTGSKFDFTKDKKAVPRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYN 1581

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS-----WAKGLPLK 664
               + +V TVHD +  +  ++    V   + ++M+         W  G+ L 
Sbjct: 1582 DKAF-LVNTVHDCVWIDAHESVADEVMDDVSAIMSSTSEVISSLW-PGVKLD 1631


>gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei]
          Length = 1649

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 102/412 (24%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            K L   R       + +   L  AV  +   R+ G    +  + TGR S      QN+P+
Sbjct: 1300 KALQQLRFMEKQMQLFEEGALFRAVLPECKNRVHGEF-CHVVTATGRLSSQSPNLQNIPK 1358

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            ++    I+++  +   R                          ++ AD + +E  VLA +
Sbjct: 1359 EDLRCLIVSRFGRRAGR--------------------------MIEADYSQLEVVVLAAL 1392

Query: 393  AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK-----------EQRAIGKVMELALGY 441
            + +   ++   +  D +    +     P + V             + R   K       Y
Sbjct: 1393 SRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQLKDPHYIQLRQQAKTFSFQRQY 1452

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              G                                                A    L  T
Sbjct: 1453 GAGTS--------------------------------------------TIATTTGLSET 1468

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                +  A    ++ + + ++ +T+     V+ G     +             +R V + 
Sbjct: 1469 EVVRLIAAEEQHYKDLGRYYRLVTD----CVEAGADRLLQLRTLDATSWPPTMRRMVLLT 1524

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTY-GGKLTENIVQAISRDIL--CEGMKNAT 618
             P    +V     G           + R + Y    L   IVQ +   I+      +N  
Sbjct: 1525 EPMHYFVV---PTGSKFDFTKDKKAVPRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYN 1581

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS-----WAKGLPLK 664
               + +V TVHD +  +  ++    V   + ++M+         W  G+ L 
Sbjct: 1582 DKAF-LVNTVHDCVWIDAHESVADEVMDDVSAIMSSTSEVISSLW-PGVKLD 1631


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 53/245 (21%)

Query: 184 ERDLWLLDQTI--------NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI-IRS 234
           ER+ WLLDQ +         +R   I+ DL      ++ +   +  +   +L D + + +
Sbjct: 1   ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSE--KTGKRLKDKVTVFN 58

Query: 235 SRQTYALRMYLFLI---------TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +   L            TG  +VD  E TLK         Q+ + L+L +  + 
Sbjct: 59  VGSRQQVAERLSAKGAVWTELTPTGKPMVD--EKTLKENSHVPEAAQVLEYLLLQKRYA- 115

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++N+  E V  DGR+ G +   GA  TGR +        +P              
Sbjct: 116 -----QVNSWLEHVQDDGRVHGRVTTNGAV-TGRMTHQNPNMAQVP-------------- 155

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                           +  R+C I   G+KLV  D +G+E R+LA   G++        G
Sbjct: 156 ---------SVNSEYGEDCRNCWIVPEGRKLVGVDASGLELRMLAHYMGDEEFTNVLLRG 206

Query: 406 EDIYV 410
            DI+ 
Sbjct: 207 -DIHT 210


>gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
 gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
          Length = 626

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 72/463 (15%), Positives = 130/463 (28%), Gaps = 94/463 (20%)

Query: 46  DRTEQSAM---PSDLLQYL--RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVL 99
           D     +    P ++   L    ++ + VAHN L F+    +K     +  +  +  ++ 
Sbjct: 49  DFLTGESFSFGPGEIEDGLGLLCQSRLLVAHNGLCFDIPAIQKLHPSLLLPR--LFDTLT 106

Query: 100 ARTNGLPSSLKNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW- 156
           A      +        L         K+    +L A   +  +    Y  T  N    W 
Sbjct: 107 ASRLIWTNLKDLDFTQLRKKSCRFPPKLAGSHSLDAWGQRLGVMKGDYGKTTENAWSRWS 166

Query: 157 QLFGEYCKRDVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +    YC++DVE    L++ +            E +   +       G   D      L 
Sbjct: 167 EDMQRYCEQDVEVLEALYRHILDQRYSPEALALEHEFQAVIFHQERTGVWFDERAAQSLY 226

Query: 211 ELIAQERKKLDEDIVKL-----------------TDGIIR------------SSRQTYAL 241
             +A +R      + ++                 T G ++            +      +
Sbjct: 227 AELAAKRNDAVTALQEVFPQKRIEEIFIPKANNRTRGYVKGVPFTKVRYETFNPASRQQI 286

Query: 242 RMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L    G    + ++     +       L       L   L L ++    +     N 
Sbjct: 287 ADRLMEKHGWKPSEFTDTGQPKVDEDVLASLPFPECKPLVDYLELLKIIGMLAEGK--NG 344

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             + V  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 345 WLKLVGPDGRIHGRVITNGAV-TGRCTHNSPNLAQIPAR--------------------- 382

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI--AGEDWKIKAFANGEDIYVT- 411
              G      R+   A      V AD +G+E R+LA    A +           DI+   
Sbjct: 383 ---GQYGKQCRALFAAPPPLVQVGADASGLELRMLAHYLAAYDGGAYAKVLLEGDIHTAN 439

Query: 412 -TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
              A            E R   K    A  Y  G +   ++ +
Sbjct: 440 QHAAGL----------ETRDNAKTFIYAFLYGAGDEKLGSIVA 472


>gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 656

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 81/554 (14%), Positives = 152/554 (27%), Gaps = 129/554 (23%)

Query: 151 NHVQAW-QLFGEYCKRDVEATRELFKRLI--PLSDGERDLWLLDQTI----NDRGYRIDL 203
              Q W +    Y ++DV  TR L++R+     S    DL    Q I       G+  + 
Sbjct: 145 TDWQEWSEEMCAYNRQDVVVTRALWERIQEQDYSQTAIDLEHQFQKIILQQEQNGFPFNQ 204

Query: 204 DLVLKLQELIAQERKKLDEDIVKL-----------------------------TDGIIRS 234
           +  +     +A+ R++L +++ ++                                   +
Sbjct: 205 EKAVLYYSQLAKRREELTQELQRIFPPEDKGDWFVPKVNNAKRGYVKGERVWRARITAFN 264

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 +   L    G +  + +E     +     ++ L  D    +  S    + K   
Sbjct: 265 PGSRKDIAERLRETRGWEPQEYTERGTPKV-DEEVLSAL--DWPEAKALSEYFLVQKRIG 321

Query: 293 ------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 N   + V  DGR+ G +   GA  TGR +        +P               
Sbjct: 322 QLAEGNNAWLKLVGRDGRIHGHVITNGAV-TGRCTHVSPNMAQVP--------------- 365

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA--FA 403
                             RS   A  G  ++ AD +G+E R LA  +A  D    A    
Sbjct: 366 --------AVGVPWGAEFRSLFYAPPGWSVLGADASGLELRCLAHFMARYDGGAYARKIL 417

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE---------QRAIGKVMELALGYQGGAKVFKTMASH 454
            G DI+     +A     +   K+         +  + K    AL Y  G      +   
Sbjct: 418 EG-DIHWANA-QALGLVAEGEKKDPENPYHMWARNKVAKRFIYALNYGAGDHKLGELVEL 475

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                +        +   +   +      +    + + A   K        +K       
Sbjct: 476 TDDQAKALLAAAPKSKIDQTSARLAKQFQYKTITFKDIAQSLKGAELRATFMKNL----- 530

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                         A ++++   ++ +R   +     R + R +H    +  +       
Sbjct: 531 -----------PALASLIEDVKRVAKKRGYLIGLDKRRLNVRSIHSAFNTLLQSA----- 574

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
           G  +             T G  L + + Q                     V  VHDE   
Sbjct: 575 GAIAVKKATCVLWDDLTTAG--LADKVQQ---------------------VAHVHDEYQL 611

Query: 635 ETPDTPYFSVGTLC 648
              +     VG + 
Sbjct: 612 LVKEGEEEHVGQIA 625


>gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1627

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 120/413 (29%), Gaps = 95/413 (23%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            K L   R       + +   L  AV     D R+ G L  +  + TGR S      QN+P
Sbjct: 1277 KALQQLRFTEKKMQLFEEGALFRAVLPECKD-RVHGEL-CHTVTATGRLSSQSPNLQNIP 1334

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            R+E                             + S      G +++ AD + +E  VLA 
Sbjct: 1335 REE------------------------DLRRLIVSRFGRREG-RMIEADYSQLEVVVLAA 1369

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            ++ +   ++   +  D +    +     P + V        K                  
Sbjct: 1370 LSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVV----RKAK------------------ 1407

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                     Q  Q  K+ S    +    +            A    L     E +  A  
Sbjct: 1408 -QERDPHYIQLRQQAKTFSFQRQYGAGIA----------TIATTTGLTEHEVERLISAEE 1456

Query: 512  AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              ++ + + ++ + +     V+ G     R             +R + +  P    +V  
Sbjct: 1457 QHYKDLSRYYRLVMD----CVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVV-- 1510

Query: 572  DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKN--ATKNGYD--- 623
               G           + R + Y        VQ ++ +   I+C  +      K  YD   
Sbjct: 1511 -PTGSKFDFAKDKKSIPRLKNYP-------VQGLAGEIVQIMCGKIVRRFYEKRNYDGRA 1562

Query: 624  -IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAE 666
             +V TVHD +  +   +    V   +  +M+          P     +P  A+
Sbjct: 1563 FLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1615


>gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1499

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 120/413 (29%), Gaps = 95/413 (23%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            K L   R       + +   L  AV     D R+ G L  +  + TGR S      QN+P
Sbjct: 1149 KALQQLRFTEKKMQLFEEGALFRAVLPECKD-RVHGEL-CHTVTATGRLSSQSPNLQNIP 1206

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            R+E                             + S      G +++ AD + +E  VLA 
Sbjct: 1207 REE------------------------DLRRLIVSRFGRREG-RMIEADYSQLEVVVLAA 1241

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            ++ +   ++   +  D +    +     P + V        K                  
Sbjct: 1242 LSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVV----RKAK------------------ 1279

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                     Q  Q  K+ S    +    +            A    L     E +  A  
Sbjct: 1280 -QERDPHYIQLRQQAKTFSFQRQYGAGIA----------TIATTTGLTEHEVERLISAEE 1328

Query: 512  AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              ++ + + ++ + +     V+ G     R             +R + +  P    +V  
Sbjct: 1329 QHYKDLSRYYRLVMD----CVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVV-- 1382

Query: 572  DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKN--ATKNGYD--- 623
               G           + R + Y        VQ ++ +   I+C  +      K  YD   
Sbjct: 1383 -PTGSKFDFAKDKKSIPRLKNYP-------VQGLAGEIVQIMCGKIVRRFYEKRNYDGRA 1434

Query: 624  -IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAE 666
             +V TVHD +  +   +    V   +  +M+          P     +P  A+
Sbjct: 1435 FLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1487


>gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
 gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
          Length = 538

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 88/286 (30%), Gaps = 49/286 (17%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              + L ++I       + +      L    F   GIDL       L+ +  H  +  L 
Sbjct: 201 ARLQALADEISAAFGHPV-NPDSPQQLLK-AFKAAGIDLPSTRSHVLERV-DHPAVKPLL 257

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L+RL S           +      GR        G   +GRW+        +P+  
Sbjct: 258 EYKELSRLHSFYGW-----AWAAQWVRGGRFHPEYVVGGVV-SGRWATSGGGALQIPK-- 309

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G  LVVAD A +E RVLA ++G
Sbjct: 310 ----------------------------VMRRAVVADQGWTLVVADAAQLEPRVLAAMSG 341

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +A     D+Y     +AF           R   K+  L+  Y G +     + + 
Sbjct: 342 DAALARAAGE-ADLYSALA-EAFG--------GSRESAKIAMLSAMYGGTSGDAPRLLAV 391

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                 +    V+  +   +  +     L      P    ++   G
Sbjct: 392 MRQRFPRAYAFVEEAARAGEEGRVVRSWLGRTCPPPSQRWRELTAG 437


>gi|145595499|ref|YP_001159796.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
 gi|145304836|gb|ABP55418.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
          Length = 592

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 70/225 (31%), Gaps = 46/225 (20%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F   G+++ + +   +   + H     + +   L R+ ++           EA   DGR 
Sbjct: 263 FARAGVEVPN-TRSWVLRGVDHPAAPLVLEYKELYRIWTAHGW-----AWQEAWVRDGRF 316

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R      G   +GRW+        +P+                               +R
Sbjct: 317 RPEYVPAGVV-SGRWATRGGGALQIPK------------------------------VIR 345

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             ++A  G   VVAD   +E R+LA ++G+     A   G D+Y      AF        
Sbjct: 346 RAVVADPGWTFVVADAGQLEPRILAAVSGDTRLAAAARAG-DLYAALADDAFG------- 397

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
              RA  KV  L   Y                +       V++ +
Sbjct: 398 -GDRARAKVALLGAMYGQTGGSAAPALEVLRRNYPAAFGYVETAA 441


>gi|84495963|ref|ZP_00994817.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84382731|gb|EAP98612.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 565

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 124/408 (30%), Gaps = 91/408 (22%)

Query: 149 RANHVQAWQLFGEYCKRDVEATRE-----------LFKRLIPLSDGERDLWLLDQTINDR 197
           RA+    W    E   R  EA  E           L  R++     E    L+   + + 
Sbjct: 136 RADAASGWLETDERLLRWAEAALECAVRQRDRAESLGARIVGTIHSESAAALMCLELEEG 195

Query: 198 GYRIDLDLVLKLQELIA------------QERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
           G  +D  ++ +L    A              R++  E +  +        R    +R  L
Sbjct: 196 GLPVDRAVMERLIGEFAGPRAASEEAAAVARRERDAEVLRHVPGRESTDLRNPLQVRDML 255

Query: 246 FLITGIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
             + G+D+ +  +  L +    H  +  L       R+A++         L + V  D R
Sbjct: 256 AGV-GVDVPNTRKWVLDAYRHVHPVVDALLAWRKAERIATTYG----YRWLDQCVGPDDR 310

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           LRG       +  GR +       NLP                                +
Sbjct: 311 LRGGWTACDGAA-GRMTAEN-GLHNLP------------------------------AAL 338

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS + A  G   V ADL  IE RVLA ++G+    +A     D+Y    ++         
Sbjct: 339 RSGVAAHPGHVFVRADLGQIEPRVLAVVSGDPAFAEATRAD-DLYAPVASRL-GVD---- 392

Query: 425 SKEQRAIGKVMELALGYQGGAKVF--------KTMASHCGLDLQQFSQNVKS--TSTFED 474
               R + K+  LA  Y   +           +      GL  + +   V+     TF  
Sbjct: 393 ----RPVAKIAVLAAMYGQRSGAAGEALKGLERAYPVAMGLLDRAYDTGVRGEPLRTFGG 448

Query: 475 WEQAESHHLWMQD---------QYPEFAVKDKLIGTACELVKKAWRAK 513
                   L                 FA    + G A EL K AW A 
Sbjct: 449 RLIPTGRFLAQSPVGTNPALDAARGRFARNAIIQGAAAELFK-AWAAT 495



 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 595 GKLTEN-IVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
           G+   N I+Q  + ++               G  IVL +HDE++   P++    V  L  
Sbjct: 473 GRFARNAIIQGAAAELFKAWAATVRALGTPMGAQIVLCLHDELLVHAPESRAAEVAALVD 532

Query: 649 -SLMTKNPSWAKGLPLK 664
            SL   +  WA G P++
Sbjct: 533 QSLADASRRWAAGAPVR 549


>gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM]
          Length = 399

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 116/370 (31%), Gaps = 84/370 (22%)

Query: 161 EYCKRDVEATRELFKRLIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           EYC +DVE T +L+  L P          E++L ++       G   D+D        + 
Sbjct: 65  EYCIQDVELTHKLYGILKPKLQSRKALSLEQELTVICNRQERHGIPFDVDRAQLFYSDLC 124

Query: 215 QERKKLDEDIVKLTD--------------------GIIRSSRQTYALRMYLFLITGIDLV 254
             R +L  +++                         ++ + R    +   L         
Sbjct: 125 GRRSELQTELIDKFGWWYTGELREPKTKPSYSKLIKVVFNPRSRQHIAKRLKDFYNWKPT 184

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSE------AVSSDGRLRG 307
           + +      +   S +++L  +    +L +    + K ++ L+E       +  +GR+ G
Sbjct: 185 EFTPSGEPKV-DESVLSKL--EYPEAKLLTEYLLVNKRISQLAEEDQAWLKLERNGRIHG 241

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +   G S T R S        +P                    +++ P G      R  
Sbjct: 242 RVNTMG-SVTSRCSHSHPNLAQIP--------------------SVSAPYGKEC---REL 277

Query: 368 IIASNGKKLVVADLAGIEARVLAWI-----AGE--DWKIKAFANGEDIYVTTYAKAFNTP 420
             A  G + +  D++G+E R LA        G+     ++     +DI+           
Sbjct: 278 FCAPEGFRFLGVDISGLELRCLAHYMALFDNGDYGKKLLE-----DDIHT--------VN 324

Query: 421 IDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +      R   K    A  Y  G      +    +       ++F   + +     +  
Sbjct: 325 QNAAGLSTRNQAKTFIYAFLYGAGDEKIGSIVGGSSEEGAKLKKRFLSQIPALEKLRNAV 384

Query: 477 QAESHHLWMQ 486
           + ++   +++
Sbjct: 385 KKKAQKGYLK 394


>gi|302868656|ref|YP_003837293.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
 gi|302571515|gb|ADL47717.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
          Length = 552

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 76/256 (29%), Gaps = 47/256 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L   I          +     L    F   G+DL + +   +   + H     + 
Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARVGVDLPN-TRAWVLRGVEHPAAPLVL 260

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L R+ ++           +A  S GR        G   +GRW+        +P+  
Sbjct: 261 EYKELYRIWTAHGW-----AWRDAWVSGGRFHPEYVPGGVV-SGRWATRGGGALQIPK-- 312

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G   VVAD   +E RVLA ++ 
Sbjct: 313 ----------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAVSE 344

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++    A   G D+Y      AF           RA  KV  L   Y           + 
Sbjct: 345 DERLAAAGGAG-DLYAALARDAF--------AGDRAKAKVALLGAMYGQTGGAAVPALAV 395

Query: 455 CGLDLQQFSQNVKSTS 470
              +       V++ +
Sbjct: 396 LRKNYPTAFGYVEAAA 411


>gi|315504872|ref|YP_004083759.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
 gi|315411491|gb|ADU09608.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
          Length = 552

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 76/256 (29%), Gaps = 47/256 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L   I          +     L    F   G+DL + +   +   + H     + 
Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARAGVDLPN-TRAWVLRGVEHPAAPLVL 260

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L R+ ++           +A  S GR        G   +GRW+        +P+  
Sbjct: 261 EYKELYRIWTAHGW-----AWRDAWVSGGRFHPEYVPGGVV-SGRWATRGGGALQIPK-- 312

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G   VVAD   +E RVLA ++ 
Sbjct: 313 ----------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAVSE 344

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++    A   G D+Y      AF           RA  KV  L   Y           + 
Sbjct: 345 DERLAAAGGAG-DLYAALARDAF--------AGDRAKAKVALLGAMYGQTGGAAVPALAV 395

Query: 455 CGLDLQQFSQNVKSTS 470
              +       V++ +
Sbjct: 396 LRKNYPTAFGYVEAAA 411


>gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1]
 gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1]
          Length = 580

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/490 (15%), Positives = 141/490 (28%), Gaps = 118/490 (24%)

Query: 61  LRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L  +  + + HN + F+    KK  G  IP K    T V++R         ++  AL+ +
Sbjct: 42  LAKQVTLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALSGN 101

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E +   +        F   + +   Y                 CK+DV    +++ +L  
Sbjct: 102 EKIDFHD--------FSTYTPEMLAY-----------------CKQDVAINEKVYLQLKE 136

Query: 180 LS--------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----- 226
                       E  +  +       G+ +D D+  ++     +E  +++ +I +     
Sbjct: 137 ELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIKEFMVPI 196

Query: 227 ----------------------LTDGIIR-----------SSRQTYALRMYLFLITGIDL 253
                                 L    ++           +      +   L    G   
Sbjct: 197 AVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-DRLGWKP 255

Query: 254 VDMSEG------------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              ++             T+      +     A  ++  R   +   + K          
Sbjct: 256 TVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLETRWKLAQEWLQKSQ-------E 308

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-QERSEEILTQTIQALNRGETIADPLGLA 360
            GR+ G +   GA  T R +       N+P      + IL +               G+ 
Sbjct: 309 TGRVHGRVILTGAV-THRAAHQGPNMANIPSVPHGKDGILWKM-------------EGMY 354

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               R       GK LV  D AGI+ RVLA    +    +   +G DI+       FN  
Sbjct: 355 GAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQVIDG-DIHT------FNKE 407

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTFEDWE 476
                 + R   K    A     G  +  ++           +  F + + S    +   
Sbjct: 408 ALGRYCKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAMANFYEAIPSLKKLKSQA 467

Query: 477 QAESHHLWMQ 486
              +   WM+
Sbjct: 468 SQAASMGWMK 477


>gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
          Length = 550

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 48/253 (18%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L ++I +     + +      +R   F   G D+   +   +   + H  +  +    
Sbjct: 203 AALADEISQAFGFPV-NPDSAVDVRA-AFRRVGFDIES-TRSWVIKAIDHPAVRPVLAYK 259

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L RL ++           E      R        GA  +GRW+        +PR     
Sbjct: 260 ELVRLHTANGW-----AWLEQWVRGNRFHAEY-LSGAVVSGRWATRGGGALQIPR----- 308

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R  ++A  G +L+VAD A +E RVLA I+ +  
Sbjct: 309 -------------------------VLRQAVVADPGYRLIVADAAQLEPRVLAAISADLV 343

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             +A +  +D+Y    A  F           RA  KV  L   Y         + S    
Sbjct: 344 L-QAISAEDDLYAGLAADGFG--------GNRAAAKVAMLGAMYGQTTGEGGRLVSTLRA 394

Query: 458 DLQQFSQNVKSTS 470
              Q    V   +
Sbjct: 395 RYPQAMGYVDGAA 407


>gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1538

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 107/375 (28%), Gaps = 80/375 (21%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+ G L     + TGR S      QN+P++E    ++     A                 
Sbjct: 1220 RVHGELCHC-VTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGM-------------- 1264

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                        ++ AD + +E  VLA +  +   ++   +  D +    +     P + 
Sbjct: 1265 ------------MIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYED 1312

Query: 424  V-----------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            V             + R   KV      Y  G     T     GL  Q+  + +   +  
Sbjct: 1313 VMRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTIST---TTGLTEQEVDRLI--VAEE 1367

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
              +++   ++  +  +  E      L     +     W A    + ++       +  VV
Sbjct: 1368 HHYKELSKYYS-LVTRCVEAGADRLLRLRTLDT--SLWNA---NIRRVVMLTEPMYYFVV 1421

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
              G      R       +               + L    V+  C        +  R+R 
Sbjct: 1422 PTGSKFDFTRDRKSVPRLKNY----------PVQGLAGEIVQIMC---GAIVREFYRKRN 1468

Query: 593  YGGK-LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            YG K    N V     D +                 V DE+ ++       +   + +L 
Sbjct: 1469 YGEKAFLVNTVH----DCVWVDAHKC----------VADEVRADLARIMGHTQEAIAAL- 1513

Query: 652  TKNPSWAKGLPLKAE 666
               P     +P KAE
Sbjct: 1514 --WPDMKLDVPFKAE 1526


>gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 592

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 120/404 (29%), Gaps = 73/404 (18%)

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           W  T+V ART          C  L  S  + ++    A  A     +             
Sbjct: 88  WDDTAVWARTLIAAGVRVARCHDLRLSHAILRLSTQTADSALARLPAGPWDAAAPAEREP 147

Query: 153 VQAWQLFGEYCKRD------VEATRELFK----------RLIPLSDGERDLWLLDQTIND 196
             +  LF +    D      + A   L            RL  L   E    L+   ++ 
Sbjct: 148 SASATLFDDLDASDGRSPDELVAELRLQLEAIAGSAESGRLRLLLAAESAGALVAAEMSA 207

Query: 197 RGYRIDLDLVLKLQELIAQERK----------KLDEDIVKLTDGIIRSSRQTYALRMYLF 246
            G   D  +   L   +   R           +L   I ++      +      +   L 
Sbjct: 208 DGLPWDTAVHDALLVDLLGGRPAHSGAPPALLRLAARIREILAAPDLNVDSPPDVLRAL- 266

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              G+D     +  L+  + H  I  L +   L+RL ++        T  E    DGR  
Sbjct: 267 RRAGVDASSTRQWELQE-IDHPVIAPLLEHKKLSRLLTANGW-----TWMETWIRDGRFH 320

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                 G   TGRW+        LPRQ                              +RS
Sbjct: 321 PEYVPGGVV-TGRWAASGGGALQLPRQ------------------------------IRS 349

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            + A  G +LVVAD A +E RVLA ++ +     A   G D+Y              V  
Sbjct: 350 AVRADPGWRLVVADAAQLEPRVLAALSEDRAMADAGR-GTDLYQ-------GLVDAGVV- 400

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           + RA  KV  L   Y   +     +         + +  V+  +
Sbjct: 401 DTRAHAKVAMLGAMYGATSGESGRLMPRLVRAYPRATGYVERAA 444


>gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1628

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 110/370 (29%), Gaps = 106/370 (28%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+ G L     + TGR S      QN+P++E    ++     A                 
Sbjct: 1310 RVHGELCHC-VTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGM-------------- 1354

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                        ++ AD + +E  VLA +  +   ++   +  D +    +     P + 
Sbjct: 1355 ------------MIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYED 1402

Query: 424  VSK-----------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            V +           + R   KV      Y  G     T     GL  Q+  + +      
Sbjct: 1403 VVRKAKVKKDPQYIQLRQQAKVFSFQRQYGAGISTIST---TTGLTEQEVDRLI------ 1453

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                 AE HH     +Y     +                            +  G   ++
Sbjct: 1454 ----VAEEHHYKELSKYYSLVTR---------------------------CVEAGADRLL 1482

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
            +     ++    N+ R+VM   +   + V+P+  +  ++  +                  
Sbjct: 1483 RLRTLDTSCWNTNIRRVVM-LTEPMYYFVVPTGSKFDFTRDRKSV--------------- 1526

Query: 593  YGGKLTENIVQAISRD---ILCEGMKN--ATKNGY----DIVLTVHDEIVSETPDTPYFS 643
               +L    VQ ++ +   I+C  +      K  Y     +V TVHD +  +   +    
Sbjct: 1527 --PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAFLVNTVHDCVWVDAHKSVADE 1584

Query: 644  V-GTLCSLMT 652
            V   L  +M 
Sbjct: 1585 VRADLARIMG 1594


>gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1628

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 110/370 (29%), Gaps = 106/370 (28%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+ G L     + TGR S      QN+P++E    ++     A                 
Sbjct: 1310 RVHGELCHC-VTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGM-------------- 1354

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                        ++ AD + +E  VLA +  +   ++   +  D +    +     P + 
Sbjct: 1355 ------------MIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYED 1402

Query: 424  VSK-----------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            V +           + R   KV      Y  G     T     GL  Q+  + +      
Sbjct: 1403 VVRKAKVKKDPQYIQLRQQAKVFSFQRQYGAGISTIST---TTGLTEQEVDRLI------ 1453

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                 AE HH     +Y     +                            +  G   ++
Sbjct: 1454 ----VAEEHHYKELSKYYSLVTR---------------------------CVEAGADRLL 1482

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
            +     ++    N+ R+VM   +   + V+P+  +  ++  +                  
Sbjct: 1483 RLRTLDTSCWNTNIRRVVM-LTEPMYYFVVPTGSKFDFTRDRKSV--------------- 1526

Query: 593  YGGKLTENIVQAISRD---ILCEGMKN--ATKNGY----DIVLTVHDEIVSETPDTPYFS 643
               +L    VQ ++ +   I+C  +      K  Y     +V TVHD +  +   +    
Sbjct: 1527 --PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAFLVNTVHDCVWVDAHKSVADE 1584

Query: 644  V-GTLCSLMT 652
            V   L  +M 
Sbjct: 1585 VRADLARIMG 1594


>gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 156

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 157 QLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLV 206
                Y   D + T  L+  L P              ER L  +   +  RG  +D  ++
Sbjct: 32  DRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQIL 91

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L   +AQ   +L+++I  L      +      L   LF   G+     ++ T +   S
Sbjct: 92  SRLSGELAQGAARLEDEIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTS 149

Query: 267 HSNITQL 273
            S +  L
Sbjct: 150 ASVLEDL 156


>gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 932

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 68/236 (28%), Gaps = 50/236 (21%)

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P+             A+N  E   D +   S  V       
Sbjct: 657 QTRTVTGRLSSSYPNLQNIPK-------------AVNCREAFRDDVQDGSAVV------- 696

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                V AD A IE R+L         +       D+Y    +     P  +V+KE R  
Sbjct: 697 -----VAADYAQIEMRLLVREKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDK 751

Query: 432 GKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            KV  LAL Y  G    A+      +       +F       S F     A+        
Sbjct: 752 VKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVT 811

Query: 488 QY---------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                     +V   + G+A +++K A       +L    
Sbjct: 812 TLTGRRRYVPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPW 867


>gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927]
 gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei]
          Length = 896

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 8/154 (5%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +      +  + TGR        Q +P+  +    ++                      +
Sbjct: 585 VHPHWAVHH-TSTGRLYCSRPNLQTVPKTAQKCTYVS------PLTSDYGLLFTNPEWTM 637

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK- 423
           R     + G  L+  D   +E RVLA ++G++  IK  ++  D+             D+ 
Sbjct: 638 RHLYGPAPGCVLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDEQ 697

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V    R   KV+   L Y  G    K        
Sbjct: 698 VPPHLRETVKVVVYGLFYGMGLATMKERVKILMD 731


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 85/253 (33%), Gaps = 47/253 (18%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
            +L E+I +     +R       LR   F   G+ L       L+ +  H  +  L    
Sbjct: 222 AELAEEISRAFGRRVRPDLPAEVLRA--FAEAGVKLTSTRRWELEKV-DHPAVAPLLTYK 278

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L R+ ++       + L++ V   GR R      GA  +GRW+        +P+     
Sbjct: 279 KLYRVWTAHG----WSWLADWVRE-GRFRPRYVVGGAV-SGRWTTAGGGALQIPK----- 327

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     VR  ++A  G +LVVAD A +E R+LA +AG+  
Sbjct: 328 -------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTA 362

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            +   A  +D+Y     +AF           R   K+  L   Y   +       +    
Sbjct: 363 LLDVAAKADDLYAAVSDRAF--------AGDRDRAKIAVLGAIYGQTSGDGLKNLAALRR 414

Query: 458 DLQQFSQNVKSTS 470
              +    V   +
Sbjct: 415 RFPKAVAYVDEAA 427


>gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 587

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 139/495 (28%), Gaps = 147/495 (29%)

Query: 9   ET--RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           ET    P  + K G+   AE   I    +      V                       +
Sbjct: 32  ETWVFGPNDI-KAGMKKLAEATEI--IGHNILGHDV---------------------PAL 67

Query: 67  MCVAHNSLFE------RILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFS 119
           M V  N   +       ++  + +  D+ +  +    S+         S           
Sbjct: 68  MKVYPNFSLDGVKLTDTLVLSRLITADLRNDDYERILSIDDFPRKYYGSHSLKAWGYRLG 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEATRELFKRLI 178
           E+     E                            W     +YC++DV     ++K L 
Sbjct: 128 EYKGDFGEQTDW----------------------SEWTQGMQDYCEQDVVVNYAVWKHLD 165

Query: 179 P------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL----- 227
           P        D E  +  +   I   G+  +++    L   +A E+ +L+ ++ +L     
Sbjct: 166 PDSYSQRAIDFEHKMAEICHRIGKAGWHFNVEKAGILYGQLAGEKAQLESELKELFPPWT 225

Query: 228 ------------------------TDGIIRSSRQTYALRMYLFLITGIDL-------VDM 256
                                      I  +      ++  L                  
Sbjct: 226 KEEIFIPKRNNKTLGYVADEPFIKCKEITFNPNSRKHIQRCLMDKYDWKPRQFTYSGDAK 285

Query: 257 SEGTLKSILSHSNITQLAKDLILNR----LASSGSAILKL---NTLSEAVSSDGRLRGTL 309
            +  + S L +    +LA+  +L +    LA   +A L+L   NTL   ++ +G      
Sbjct: 286 IDEGVLSRLPYPEAKKLARSFLLQKRIGMLAEGNNAWLRLVEGNTLCHVINPNG------ 339

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR +   F    +P                    ++  P G      R    
Sbjct: 340 -----AVTGRATHFNFNTAQVP--------------------SVRAPYGKEC---RELFG 371

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
              G  LV +DL+G+E R LA +  +  K        DI++       N     ++   R
Sbjct: 372 VPEGYSLVGSDLSGVELRCLANVLQDQGKYANIILNADIHLA------NMHSMGLTS--R 423

Query: 430 AIGKVMELALGYQGG 444
              K     + Y GG
Sbjct: 424 DQAKTAIYCMIYGGG 438


>gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1548

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 38/170 (22%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+ G L     + TGR S      QN+P++E    ++     A                 
Sbjct: 1230 RVHGELCHC-VTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGM-------------- 1274

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                        ++ AD + +E  VLA +  +   ++   +  D +    +     P + 
Sbjct: 1275 ------------MIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYED 1322

Query: 424  VSK-----------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            V +           + R   KV      Y  G     T       ++ + 
Sbjct: 1323 VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRL 1372


>gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania
            infantum JPCM5]
          Length = 1548

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 38/170 (22%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+ G L     + TGR S      QN+P++E    ++     A                 
Sbjct: 1230 RVHGELCHC-VTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGM-------------- 1274

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                        ++ AD + +E  VLA +  +   ++   +  D +    +     P + 
Sbjct: 1275 ------------MIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYED 1322

Query: 424  VSK-----------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            V +           + R   KV      Y  G     T       ++ + 
Sbjct: 1323 VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRL 1372


>gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM]
          Length = 396

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 106/325 (32%), Gaps = 56/325 (17%)

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL---WLLDQTINDRGYRIDLDL 205
           + +  +A+ +  +  +R +E  RE+ K   PL   ++++   +  D +++  G +   D 
Sbjct: 92  KLDVKRAFDIQAKLKQRSMEVEREVHKTFTPLPVFDKEVTPKYNKDGSLSVVGLKFLGDR 151

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
              +    ++                  +      +  +L        +   +G  ++I+
Sbjct: 152 YTDVAGPFSR------------VSFPEFNLGSRQQIARHLQFFGWKPKLFTEKG--QAIV 197

Query: 266 SHSNITQLAKDLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
               ++++  D+   +L +    I K    + +  EAV  DGR+ G +   GA  TGR +
Sbjct: 198 DEGVLSRV--DIPEAKLIAEYLLIQKRTAQVQSWIEAVEEDGRVHGRVNPIGAV-TGRMT 254

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                   +P                                 R C     G +LV  D 
Sbjct: 255 HSSPNMAQVPASYSP-----------------------YGTECRECWTVPKGYRLVGIDA 291

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           AG+E R+LA    ++       NG D++         T         R + K    A  Y
Sbjct: 292 AGLELRMLAHYMNDEEYTNEVTNG-DVHT--------TNQKNAGLATRDLAKTFIYAFLY 342

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNV 466
             G      +      D  +  +  
Sbjct: 343 GAGDAKIGAIVGGSRRDGAELKEKF 367


>gi|256831724|ref|YP_003160451.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
 gi|256685255|gb|ACV08148.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
          Length = 600

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 87/283 (30%), Gaps = 57/283 (20%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER----------KKLDED 223
            +RL  L   E    L+ + +   G   D D    L      ER          + + ++
Sbjct: 179 RQRLSFLMALESAGALIAREMYAVGVPWDRDHHEALLREQLGERPAVGVRPAALEAVAQE 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           + +L D    +      L   L    GI +   S+  L+    H  +  L +   L RL 
Sbjct: 239 LRRLLDAPELNPDSPKDLLRALNSA-GIPVTTTSKWALREH-RHPALAPLERYKHLARLW 296

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++           +   SDGR R      G   TGRW         LPR           
Sbjct: 297 TAHGW-----AWLDEWVSDGRYRPVYTPGGVV-TGRWGADGGGALQLPR----------- 339

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R    A +G   V+AD + +E RVLA ++G+    +A  
Sbjct: 340 -------------------AIRGAARAGDGFTFVIADASQLEPRVLAAMSGDAAMAEAGR 380

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
            G D+Y                   R   K   L   Y G   
Sbjct: 381 -GGDMYQRIADA--GVVPS------REHAKYGMLGAMYGGTTG 414


>gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
 gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
          Length = 1712

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 38/199 (19%)

Query: 363  CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----------GEDIYVT 411
             +R   +A  G+ L+  D   +EAR+LA   G+   I  F               DI+V 
Sbjct: 1451 ALRDAFVAPKGRLLLSVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVH 1510

Query: 412  TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTS 470
              +   +  +++VS  +R   K +   + Y  GA+   + M           S+      
Sbjct: 1511 IASTWLSKALNEVSDMERNGIKQLVYGVIYGMGARSLSREMGVTLAEGEALMSKFDNEFP 1570

Query: 471  TFEDWEQAESHHLWM--------------------------QDQYPEFAVKDKLIGTACE 504
               +W ++  H                              + +    AV      +A +
Sbjct: 1571 RVREWTRSVIHGATREGASVPSILGRPRHLAGLGGGGTAQERARAQRQAVNTACQASAAD 1630

Query: 505  LVKKAWRAKHQGVLQLWKD 523
            ++K A     + +  +  +
Sbjct: 1631 IMKAATLEVARRLAAMRDE 1649



 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 598  TENIVQAISRDILCEGMKNATKN-----------GYDIVLTVHDEIVSETPDT 639
                 QA + DI+        +              +I+L +HDE++ E  + 
Sbjct: 1620 VNTACQASAADIMKAATLEVARRLAAMRDENGRPPAEILLQIHDELLLEVDED 1672


>gi|330469036|ref|YP_004406779.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
 gi|328812007|gb|AEB46179.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
          Length = 548

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +    L   I +        +     L    F   GIDL + +   +   + H  +  + 
Sbjct: 198 RRLADLAAQIAEAFGVRQVHADSPAELLR-AFARAGIDLPN-TRSWVLRGVDHPAVPLVL 255

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L R+ ++           +A   DGR +      G   +GRW+        +P+  
Sbjct: 256 EYKELYRIWTAHG-----RAWRDAWVRDGRFQPEYVPGGVV-SGRWATRGGGALQIPK-- 307

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G + VVAD   +E RVLA ++G
Sbjct: 308 ----------------------------VIRRAAMADPGWRFVVADAGQLEPRVLAAVSG 339

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG-GAKVFKTMAS 453
           +     A A G D+Y      AF           R   K+  L   Y   G +    +A 
Sbjct: 340 DARLAAAGATG-DLYQALARDAFG--------GDRGRAKLALLGAMYGQTGGEAVPALAG 390

Query: 454 HCGLD 458
             G  
Sbjct: 391 VRGNY 395


>gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 935

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 68/236 (28%), Gaps = 50/236 (21%)

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P+             A+N  E   D +   S  V       
Sbjct: 660 QTRTVTGRLSSSYPNLQNIPK-------------AVNCREAFRDDVQDGSAVV------- 699

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                V AD A IE R+L         +       D+Y    +     P  +V+KE R  
Sbjct: 700 -----VAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDK 754

Query: 432 GKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            KV  LAL Y  G    A+      +       +F       S F     A+        
Sbjct: 755 VKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVT 814

Query: 488 QY---------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                     +V   + G+A +++K A       +L    
Sbjct: 815 TLTGRRRYVPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPW 870


>gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 938

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 68/236 (28%), Gaps = 50/236 (21%)

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P+             A+N  E   D +   S  V       
Sbjct: 663 QTRTVTGRLSSSYPNLQNIPK-------------AVNCREAFRDDVQDGSAVV------- 702

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                V AD A IE R+L         +       D+Y    +     P  +V+KE R  
Sbjct: 703 -----VAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDK 757

Query: 432 GKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            KV  LAL Y  G    A+      +       +F       S F     A+        
Sbjct: 758 VKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVT 817

Query: 488 QY---------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                     +V   + G+A +++K A       +L    
Sbjct: 818 TLTGRRRYVPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPW 873


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 15/197 (7%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68
                 +   G+  + E+  I L   A ++ PV ++D      + +   L + L DE ++ 
Sbjct: 1244 YCGLDMETTGLEVFGEK--IRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1301

Query: 69   VAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            +  N  F+ + L      I      +I + +L +   +     N  +    S +L K ++
Sbjct: 1302 IIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQ 1361

Query: 128  GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                       +        +        +L+ +  ++ V    ++      ++D E   
Sbjct: 1362 NSVWNNSLLNNNQLFYAARDSSC----LLKLYKKLSEQIVAENMQI------VNDIENKC 1411

Query: 188  WLLDQTINDRGYRIDLD 204
             L    +   G  +DL+
Sbjct: 1412 ILPICDMELNGITVDLE 1428


>gi|256395061|ref|YP_003116625.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
 gi|256361287|gb|ACU74784.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
          Length = 568

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 74/243 (30%), Gaps = 51/243 (20%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +E   +   + +       +      +    F   G+ L  +    L+  + H  I  L 
Sbjct: 217 REMVAMAARLAEALGIRALNPDSAAQVTK-AFSDAGVKLPSLRRWELEG-IDHPAIPLLL 274

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           K   L+RL S    +       +    DGR R      G   TGRW+        + R  
Sbjct: 275 KYKELSRLYSFNGWV-----WRDTWVVDGRFRPEYSVGGVV-TGRWAARGGGALQIAR-- 326

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  +IA  G   V AD A +E R+LA +A 
Sbjct: 327 ----------------------------RLRKAVIADPGWLFVSADAAQLEPRILAAMAQ 358

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY---QGGAKVFKTM 451
           +    +A  +  D+Y       F        +  R   K+  L   Y    GGA     +
Sbjct: 359 DPGMAEATQSD-DMYSALAG-VF--------EGSRDQAKLGLLGAMYGQTGGGAAAPLAL 408

Query: 452 ASH 454
              
Sbjct: 409 MRR 411


>gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 60

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           R  TYGGKL ENIVQA++RD+L   M    + G+ IV+ V DE V
Sbjct: 4   RLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDEPV 48


>gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 846

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 8/154 (5%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +      +  + TGR        Q +P+  +    ++                      +
Sbjct: 535 VHPHWAVHH-TSTGRLYCSRPNLQTVPKTAQKCTYVS------PLTSDYGLLFTNPEWTM 587

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK- 423
           R     + G  L+  D   +E RVLA ++G++  I+  ++  D+             D+ 
Sbjct: 588 RHLYGPAPGCVLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDEQ 647

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           V    R   KV+   L Y  G    K        
Sbjct: 648 VPPHLRETVKVVVYGLFYGMGLATMKERVKILMD 681


>gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 107

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 32/133 (24%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309
            + G   S  S   + +LA D  L ++      + KL     + L   ++   GR+  + 
Sbjct: 1   KTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY 59

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   I
Sbjct: 60  -HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFI 94

Query: 370 ASNGKKLVVADLA 382
           A     +V AD +
Sbjct: 95  APEDYLIVSADYS 107


>gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L+  ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFKKKTEKGNVIVDEKVLNSIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G +LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L+  ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFKKKTEKGNIIVDEKVLNSIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G +LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|297538972|ref|YP_003674741.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
 gi|297258319|gb|ADI30164.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
          Length = 515

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 114/382 (29%), Gaps = 56/382 (14%)

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSID----SPPYDCTRANHVQAWQLFGEY- 162
            L          +   K +  KAL+  +     D       Y    +  ++ +QLF    
Sbjct: 74  ELAKFISGKKLDKETIKEKSIKALMKPYYTDIKDLDNYFEEYYRRISFELETYQLFSHML 133

Query: 163 --CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE-LIAQERKK 219
             C  ++    +         + E  ++ L   +  RG + D  ++ + ++ +     ++
Sbjct: 134 FSCWENMTVLAKSKGEWDRYIEVELPVFNLMTKVAVRGIKTDNKILREHKKNIDDDFFRE 193

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L +    +  G+         L   L    G DL +MS   +   L   +     + + L
Sbjct: 194 LKK--FAIEYGLFFEVPIANVLHDILSDR-GYDLTEMSVDFVLEFLPMVDNFG-ERVIAL 249

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            +L  S  A+  +      V        T        T R        QNL ++      
Sbjct: 250 QKLQKSRVALANITLSKTRVCPIAETHST-------VTSRMYYKNPTVQNLAKRY----- 297

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                    R   IA N + L   D    E  ++A ++ +    
Sbjct: 298 -------------------------RDIFIADNDRTLSYVDYDQFEIGIMAALSKDKKLE 332

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           + ++N  DIY     + F        + +R+I K + LA  Y              G D 
Sbjct: 333 EIYSN-TDIYKKFSLEIFG------DEGKRSISKKLFLAFTYGMTHVNLLEAVKQHGGDK 385

Query: 460 QQFSQNVKSTSTFEDWEQAESH 481
           +         + F +W      
Sbjct: 386 EVARLFFDQFAVFIEWRVGIEK 407


>gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTFRRLKDKVTTFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+   + +E       +  L+  ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFTNKTEKGNIIVDEKALNSIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G KLV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNKLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 563

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 105/320 (32%), Gaps = 60/320 (18%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG--------YRIDLDLVLK--LQ 210
           +  + D  A  +   R+  L+  E    L+   +N  G         R+  +L+ +    
Sbjct: 143 QQRRHDATAHPD---RMRLLTAAESAGMLVAAEMNRAGLPWSAETHRRVLHELLGERYAG 199

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
               +   +L +++       +R       ++   F   GI +       ++S L H  +
Sbjct: 200 GGEPRRLAELADEVSAAFGRRVRPDLPADVVKA--FAQAGIKVKSTRRWEIQS-LDHPAV 256

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L +   L R+  +       + L + V  DGR R      G + TGRW         +
Sbjct: 257 KPLVEYKKLYRIWVAHG----WSWLQDWV-RDGRFRPEF-LAGGTVTGRWVTHGGGALQI 310

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P+                               +R  ++A  G +LVVAD   +E RVLA
Sbjct: 311 PK------------------------------VIRRAVVADPGWRLVVADADQMEPRVLA 340

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I+ +   ++      D+Y +   +AF           RA  K+  L   Y   +     
Sbjct: 341 AISRDPGLMEVAGRESDLYQSVSDRAF--------SGDRAQAKLAVLGAVYGQTSGDGLK 392

Query: 451 MASHCGLDLQQFSQNVKSTS 470
             +       +    V   +
Sbjct: 393 NLAALRRRFPKAVAYVDDAA 412


>gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
 gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
          Length = 585

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 94/293 (32%), Gaps = 55/293 (18%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           + L   +    D    +      L   L   +G+D+   S+  L+    H  +  L +  
Sbjct: 221 EALAAQVRDALDVPTLNPDSQPDLLRAL-RRSGLDVTSTSKWELQRS-EHPAVAPLLEYK 278

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L RL S+           +   +DGR R      G   TGRW+        LP+     
Sbjct: 279 KLYRLLSANGW-----AWMDQWVTDGRFRAEWVPGGVV-TGRWATRGGGALQLPKG---- 328

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +RS + A +G  LV+AD A +E R+LA ++G+D 
Sbjct: 329 --------------------------IRSAVRADDGWLLVIADAAQLEPRILAAMSGDDA 362

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + A A G D+Y            +    + RA  KV  LA  Y               +
Sbjct: 363 MVAAGARG-DLY---AGLV-----EAGVVDTRAHAKVAMLAALYGATTG-------QAAM 406

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-PEFAVKDKLIGTACELVKKA 509
            + + ++         D       +  +   +    +V       A +    A
Sbjct: 407 LVPRLARAYPRAVGLVDAAARVGENGGVVSTWLGRSSVPPGEAWHAAQSAASA 459


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 94/289 (32%), Gaps = 42/289 (14%)

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  +L E I    +    +     ++   L    G+D+   +   +   + H  I  L +
Sbjct: 211 KLAELAERITAAFNDPTVNPDHPGSIVRAL-RRDGVDVPS-TRAHVLRHVDHPAIAPLLE 268

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              L RL S+           +    DGR R      G   +GRW+        +P+   
Sbjct: 269 YKELARLHSAHGW-----AWLDQWVRDGRFRPV-YVVGGVVSGRWASRGGAALQIPK--- 319

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R C+ A  G  LVVAD A +E RVLA ++G+
Sbjct: 320 ---------------------------LLRGCVRADPGWTLVVADAAQLEPRVLAALSGD 352

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +  A+  D+Y +     F     +   + RA  K+  L+  Y G +     + S  
Sbjct: 353 RRLAEVSAD-ADLYTSLTHTLFGRTPIE---DDRARAKIAMLSAMYGGTSGEAAPLLSLL 408

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                     V+  +   +        L      P  A +    G+  E
Sbjct: 409 RRRFPHAVSFVEHAAREGERGGLVRSRLGRTSLPPPEAWRTLTGGSGDE 457


>gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus
           fuscus/P1/IT/USA/2009]
          Length = 713

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 99/367 (26%), Gaps = 59/367 (16%)

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG------------TLKSILSHSNITQLAKDLILNR 281
           +      L   L            +G             LK  ++   +  + K L++ +
Sbjct: 337 NPNSNDHLIKVLTDRGWEPTEFTDKGNPKCDDETLEYVKLKDPVAQHCLELVRKYLVIQK 396

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           L +  +         + V SDGR+ G++   GA  TGR +        +P   +      
Sbjct: 397 LIAQAAEGK--QAWLKNVKSDGRVHGSINPCGAV-TGRATHSSPNMAQVPANGKLHGETC 453

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKI 399
           +   A        D                +    V  D +G+E R L   A   +  + 
Sbjct: 454 RG--AFGAHHNKKDGK-------------PDPWIQVGVDASGLELRCLGHFAAPYDGGEY 498

Query: 400 KAFANGEDIY---VTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGA----KVFK 449
                  DI+         A N P DK        R   K    A  Y  GA     +  
Sbjct: 499 AENVLNGDIHWTNAVNAGLAPNVPRDKEDHYHDACRNNAKTFIYAFLYGAGAAKIGSIVG 558

Query: 450 TMASHCGLDLQQFSQNVKSTSTF-----------EDWEQAESHHLWMQDQYPEFAVKDKL 498
             A       ++F +   +  +            E W   E    W +        +   
Sbjct: 559 GHAKEGKELTKKFMEGTPAIKSLREGIASALVSSEKWVDGEMQVKWKRRWLKGLDGRKVH 618

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           + +    +    ++    + + W         V +   +   +   +     M     ++
Sbjct: 619 VRSPHSALNTLLQSAGALICKKW------IVEVEKAMIAAGYKHGWDGDFAYMAWVHDEL 672

Query: 559 HIVLPSS 565
            I   + 
Sbjct: 673 QIACRTQ 679


>gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 123/409 (30%), Gaps = 104/409 (25%)

Query: 149 RANHVQAWQLF----GEYCKRDV----EATRELFKRLIPLSDG----ERDLWLLDQTIND 196
           + +H   W  +     EYCKRDV    +    L + L   S+     E  +  + Q   D
Sbjct: 30  KGDHTD-WSTYSPEMREYCKRDVGLLEKVVLALDEELKGFSEKSIQLEHQVAWIIQEQMD 88

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR----------------------- 233
            G+ +D + V  L   + +++ +L++++ K+   I +                       
Sbjct: 89  NGWLLDQEAVFMLLAELKEKKMELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYY 148

Query: 234 --------------------SSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNI 270
                               +      +   L               +G   + +    +
Sbjct: 149 GERWSDEICGEHTRLEWQEFNIGSRQQIAERLMSAGWKPTKFTPKTPKGGGGNPIVDDVV 208

Query: 271 TQLAKDLILNRLASSGSAILKLNTLS----EAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
               K +    L +    +++   ++    +AV  DGR+ G +   GA  TGR +     
Sbjct: 209 LADVKGIPEATLMADYLTVVRRIAMAQSWLDAVEDDGRVHGEVNSNGAV-TGRMTHYSPN 267

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
              +    +                       +    +RSC     G KLV  D  G+E 
Sbjct: 268 LGQVTSGSK-----------------------IYGPEMRSCWTVPQGHKLVGMDADGLEL 304

Query: 387 RVLAWIAGEDWKIKAFANGE-----DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           R+LA    +    +  A G+     D +                   R   K    A  Y
Sbjct: 305 RMLAHYMNDPEYTRMVAEGDKDAGTDAHTA--------NQRAAGLNSRDDAKTFIYAFLY 356

Query: 442 QGG---AKVFKTMASHCGLDLQ-QFSQNVKSTSTFEDWEQAESHHLWMQ 486
             G           +  G +L+ +F  N  + ++  +     +   W++
Sbjct: 357 GAGDAKIGTIVGKGAKAGRELKARFLDNTPALASLRERVSNSARRGWLK 405


>gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)]
          Length = 563

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 96/309 (31%), Gaps = 57/309 (18%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRG----------YRIDLDLVLKLQELIAQERKKLD 221
            L  RL  L+  E    L+   +N  G             DL           +   +L 
Sbjct: 151 ALPDRLRLLTAAESAGMLVAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELA 210

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           E++       +R       ++   F   G+ +       L+S L H  +  L +   L R
Sbjct: 211 EEVSAAFGRRVRPDLPADVVKA--FGQAGVKVGSTRRWELES-LDHPAVKPLIEYKKLYR 267

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           +  +       + L + V  DGR R      G + TGRW         +P+         
Sbjct: 268 IWVAHG----WSWLQDWV-RDGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK--------- 312

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R  ++A  G +LVVAD   +E RVLA I+ +   ++ 
Sbjct: 313 ---------------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEV 351

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
                D+Y +   +AF           R   K+  L   Y   +       +       +
Sbjct: 352 AGRETDLYQSVSDRAF--------SGDRDQAKLAVLGAVYGQTSGDGLKNLAALRRRFPR 403

Query: 462 FSQNVKSTS 470
               V   +
Sbjct: 404 AVAYVDDAA 412


>gi|196009946|ref|XP_002114838.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
 gi|190582900|gb|EDV22972.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
          Length = 628

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 29/249 (11%)

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            RID +L+   Q +   + + L++   ++   I         LR  +  I+G      S 
Sbjct: 307 IRIDTELLRDYQPIFEAKLEALEKKAHQVYCIIF-----IKRLRQSILQISGYSFSLQSP 361

Query: 259 GTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGAS 315
             +++IL     + Q+ K  ++ +     S       L++  S+  DG LR   +     
Sbjct: 362 KQIETILFEKLKLDQVLKLNLVLKTKKKQSLSTSDEVLNKIKSTSIDGILRLMKK----- 416

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
                       Q +P+      I    I+         +     S   R  II      
Sbjct: 417 ----------NMQAIPK----AMIDFGGIEDTKIFGENENETYKGSYSPRDMIITKKNYS 462

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANG--EDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
           LV  D   IE R+LA  + +   ++ F      +IY       FN  ID +S+ +    K
Sbjct: 463 LVSVDFQAIELRLLAHFSNDSMLLQIFNEHPTINIYTWLATFWFNKNIDDISQAEFDQAK 522

Query: 434 VMELALGYQ 442
            +  ++ Y 
Sbjct: 523 EICYSILYG 531


>gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 531

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 90/288 (31%), Gaps = 49/288 (17%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              + L + + +       +      +    F   G+ +       +K +  H  +  L 
Sbjct: 194 ARLQALADQVAEAFGTPF-NPDSPQQIVK-AFKSAGVPVASTRAHEIKKV-DHPGVAPLL 250

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               + R+ S    +      ++    D R R      G   +GRW+        +P+  
Sbjct: 251 AYKEMARIYSFHGWV-----WADQWVRDHRFRPEYVVGGVV-SGRWATSGGGALQIPK-- 302

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G  LVVAD A +E RVLA +AG
Sbjct: 303 ----------------------------VMRQVVVADEGWTLVVADAAQLEPRVLAAMAG 334

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +A     D+Y     +AF          +R   K+  L+  Y G +     + + 
Sbjct: 335 DGGLARAAGQ-IDLYQALA-QAFG--------GERDSAKIAMLSAMYGGTSGDAPKLLAV 384

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                 +  Q V+  +   +  +     L      P    ++ + G  
Sbjct: 385 MRQRFPRAYQFVEDAARSGEEGKLVRSWLGRTCPQPSAGWRELVSGPE 432


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 85/253 (33%), Gaps = 47/253 (18%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
            +L E+I +     +R       +R   F   G+ L       L+ +  H  +  L    
Sbjct: 212 AELAEEISRAFGRRVRPDLPAEVVRA--FAEAGVKLTSTRRWELEKV-DHPAVAPLLTYK 268

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            L R+ ++       + L++ V   GR R      GA  +GRW+        +P+     
Sbjct: 269 KLYRVWTAHG----WSWLADWVRE-GRFRPRYVVGGAV-SGRWTTAGGGALQIPK----- 317

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     VR  ++A  G +LVVAD A +E R+LA +AG+  
Sbjct: 318 -------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTA 352

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            +   A  +D+Y     +AF           R   K+  L   Y   +       +    
Sbjct: 353 LLDVAAKADDLYAAVSDRAF--------AGDRDRAKIAVLGAIYGQTSGDGLKNLAALRR 404

Query: 458 DLQQFSQNVKSTS 470
              +    V   +
Sbjct: 405 RFPKAVAYVDEAA 417


>gi|254388656|ref|ZP_05003889.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197702376|gb|EDY48188.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 562

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 97/298 (32%), Gaps = 54/298 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L +++       +R       L+   F   G+ L       L+  + H  +  L 
Sbjct: 198 RRLAELADEVSAAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELEG-IDHPAVPPLL 254

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L R+  +         L + V  DGR R   Q  GA  +GRW+        +P+  
Sbjct: 255 EYKKLYRIWVAHG----WGWLQDWV-RDGRFRPAYQPGGAV-SGRWTTLGGGALQIPK-- 306

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD+  +E RVLA ++ 
Sbjct: 307 ----------------------------VIRRAVVADAGWRLVVADVDQMEPRVLAAVSR 338

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++  A+ +D+Y     +AF           R   K+  L   Y   +       + 
Sbjct: 339 DPGLMEVAAHEDDLYTRLSDRAF--------SGDREQAKLALLGAVYGQTSGDGLKNLAA 390

Query: 455 CGL-------DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      + + ++  +       W    S     +D   E  +  +    A + 
Sbjct: 391 LRRRFPAAVAYVDEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDP 448


>gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 493

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 96/309 (31%), Gaps = 57/309 (18%)

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRG----------YRIDLDLVLKLQELIAQERKKLD 221
            L  RL  L+  E    L+   +N  G             DL           +   +L 
Sbjct: 81  ALPDRLRLLTAAESAGMLVAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELA 140

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           E++       +R       ++   F   G+ +       L+S L H  +  L +   L R
Sbjct: 141 EEVSAAFGRRVRPDLPADVVKA--FGQAGVKVGSTRRWELES-LDHPAVKPLIEYKKLYR 197

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           +  +       + L + V  DGR R      G + TGRW         +P+         
Sbjct: 198 IWVAHG----WSWLQDWV-RDGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK--------- 242

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R  ++A  G +LVVAD   +E RVLA I+ +   ++ 
Sbjct: 243 ---------------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEV 281

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
                D+Y +   +AF           R   K+  L   Y   +       +       +
Sbjct: 282 AGRETDLYQSVSDRAF--------SGDRDQAKLAVLGAVYGQTSGDGLKNLAALRRRFPR 333

Query: 462 FSQNVKSTS 470
               V   +
Sbjct: 334 AVAYVDDAA 342


>gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G +LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331]
          Length = 568

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 45/226 (19%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F   GI +       L++ L H  +  L +   L R+ ++         L + V  DGR 
Sbjct: 234 FAQAGIKVGSTRRWELEA-LDHPAVEPLIRYKKLYRVWTAHG----WGWLQDWV-RDGRF 287

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R   Q  G + +GRW+        +P+                               +R
Sbjct: 288 RPGYQP-GGTVSGRWTTNGGGALQIPK------------------------------VIR 316

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             ++A  G +LVVAD   +E RVLA I+ +   ++   +  D+Y     +AF+       
Sbjct: 317 RAVVADEGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYKALSDRAFH------- 369

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
              R   K+  L   Y   +       +       Q    V   + 
Sbjct: 370 -GDRDHAKIALLGAVYGQTSGDGLKNLAALRRRFPQAVAYVDDAAK 414


>gi|294813269|ref|ZP_06771912.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|326441791|ref|ZP_08216525.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325868|gb|EFG07511.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 571

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 97/298 (32%), Gaps = 54/298 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L +++       +R       L+   F   G+ L       L+  + H  +  L 
Sbjct: 207 RRLAELADEVSAAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELEG-IDHPAVPPLL 263

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L R+  +         L + V  DGR R   Q  GA  +GRW+        +P+  
Sbjct: 264 EYKKLYRIWVAHG----WGWLQDWV-RDGRFRPAYQPGGAV-SGRWTTLGGGALQIPK-- 315

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD+  +E RVLA ++ 
Sbjct: 316 ----------------------------VIRRAVVADAGWRLVVADVDQMEPRVLAAVSR 347

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++  A+ +D+Y     +AF           R   K+  L   Y   +       + 
Sbjct: 348 DPGLMEVAAHEDDLYTRLSDRAF--------SGDREQAKLALLGAVYGQTSGDGLKNLAA 399

Query: 455 CGL-------DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      + + ++  +       W    S     +D   E  +  +    A + 
Sbjct: 400 LRRRFPAAVAYVDEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDP 457


>gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1629

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 49/234 (20%)

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
            +    ++  + A+ ++  R           NT     +   V  D         +  + T
Sbjct: 1248 TYFKKTHGDKTAETILELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNT 1307

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-- 375
            GR +      QN+P++++S                           +R   ++  G+K  
Sbjct: 1308 GRLASANPNCQNIPKEDKS--------------------------PLREMFVSRYGEKGM 1341

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV-TTY--------AKAFNTPIDKVSK 426
             + AD + +E   LA +A +   ++   +  D +              +           
Sbjct: 1342 CIEADYSQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMRPDLQYTEILKKAKKDKEP 1401

Query: 427  E---QRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE 473
            E    R   K+      Y  G K+               +++  +  +    F 
Sbjct: 1402 EFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKERETYRGVDVFN 1455


>gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927]
 gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei]
 gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            brucei]
          Length = 1629

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 49/234 (20%)

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317
            +    ++  + A+ ++  R           NT     +   V  D         +  + T
Sbjct: 1248 TYFKKTHGDKTAETILELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNT 1307

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-- 375
            GR +      QN+P++++S                           +R   ++  G+K  
Sbjct: 1308 GRLASANPNCQNIPKEDKS--------------------------PLREMFVSRYGEKGM 1341

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV-TTY--------AKAFNTPIDKVSK 426
             + AD + +E   LA +A +   ++   +  D +              +           
Sbjct: 1342 CIEADYSQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMRPDLQYTEILKKAKKDKEP 1401

Query: 427  E---QRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFE 473
            E    R   K+      Y  G K+               +++  +  +    F 
Sbjct: 1402 EFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKERETYRGVDVFN 1455


>gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 562

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 96/290 (33%), Gaps = 43/290 (14%)

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L   I +   G   +     ++   L    GI++   +   L   + H  +  L +   
Sbjct: 206 ELAAKISEAFGGRPVNPDSPPSVVRAL-ARAGIEVPA-ARKYLLKGIDHPAVGPLLEYKE 263

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L+RL ++           +   +DGR R      G   +GRW+        +P+      
Sbjct: 264 LSRLFTANGW-----AWLDEWVADGRFRPHYVVGGVV-SGRWASRGGGALQIPK------ 311

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R+C+ A +G KLVVAD A +E RVL  ++G+   
Sbjct: 312 ------------------------VLRTCVRADSGWKLVVADAAQLEPRVLTALSGDRRL 347

Query: 399 IKAFANGEDIYVTTYAKAFN----TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
               A   D+Y       F+     P     ++ RA  K+  L+  Y G +     +   
Sbjct: 348 ADV-AAATDLYARLGEALFSGARWVPAADDDRDDRARAKIAMLSAMYGGTSGEAGPLLGL 406

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      V+  +   +  +     L      P  A +    G A +
Sbjct: 407 LRQRFPDAVSYVEHAAQAGERGERVRSRLGRTSPAPSAAWRALTGGLASD 456


>gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEETGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60]
 gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60]
          Length = 587

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 95/594 (15%), Positives = 163/594 (27%), Gaps = 152/594 (25%)

Query: 1   MSKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           M  L  DIET    P   +    V    +        + +D         T       + 
Sbjct: 1   MK-LAFDIETDGLIPDLTIIHCIVARDIDTDEE----FRFDG--------TGDYPSIKEG 47

Query: 58  LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTN------------- 103
           L+ L     +   HN   ++    +K      P      T +L+R               
Sbjct: 48  LELLSKADEL-WGHNIVNYDYPAIQKLHPDWTPPSCTRDTLILSRLFFTDLLDRDFRSRP 106

Query: 104 -----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                 L               H ++   GK+L   +   S +                 
Sbjct: 107 ALMPGNLYGRHSLEAWGHRLGHHKSEF--GKSLEGDWSTYSPEML--------------- 149

Query: 159 FGEYCKRDVEATRELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             EYC RDVE +  L K  +P         D E ++  +       G+  D+     L+ 
Sbjct: 150 --EYCARDVEVSVALAKTFVPKIPEYQWSVDTEHEIARIMSWQEQMGFPFDVRAAQALEG 207

Query: 212 LIAQERKKLDEDIVK---LTDGIIRSSRQTYALRM----------------------YLF 246
            +  E   L +D+ +     DG + + +++  +R                       + F
Sbjct: 208 KLRLELDTLSDDMRETFHFVDGGVMTPKRSNKVRHYFENAPFCKLREFNPTSRHHIAWAF 267

Query: 247 LIT-GIDLVDMSEGTLKSI-------LSHSNITQLAKDLILNR----LASSGSAILKLNT 294
               G +  + + G    I       ++       A+ L L +    L+   +A LKL  
Sbjct: 268 EHHRGWEPKERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGKNAWLKLE- 326

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
                   GRL  +      + TGR +        +P                       
Sbjct: 327 ------RKGRLHHSCVLN--TNTGRQAHMRPNLAQVPSAHE------------------- 359

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTT 412
                     RS    S+    V +D +G+E R L   ++  D    A      DI+   
Sbjct: 360 ---------YRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTAL 410

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST- 471
             + + T         R  GK +   L Y GG       A        +  Q ++     
Sbjct: 411 A-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQ 461

Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               F D   A                  +L G     +    ++    + +LW
Sbjct: 462 GLSGFADLNAAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 515


>gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
 gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
          Length = 687

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/479 (16%), Positives = 135/479 (28%), Gaps = 113/479 (23%)

Query: 46  DRTEQSAM---PSDLLQYLRD--ETVMCVAHNS-LFERILFKKTLGI-DIPSKRWICTSV 98
           D          P +  + L+D  E  + VAHN   ++    KK     DI   + I T V
Sbjct: 51  DLVTGEVREYRPHEHHELLKDLYEADVLVAHNGINYDVPALKKLFPFWDIQPTKVIDTLV 110

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI-----------DSPPYDC 147
           L+R        ++              EEG  +        +               Y  
Sbjct: 111 LSRLLFADIKDRDMSGVRR----WRLREEGHEVTGWVLPPKLLGSHSLKAWGYRLQEYKG 166

Query: 148 TRANHVQAWQLFGE----YCKRDVEATRELFKRL--------IPLSDGERDLWLLDQTIN 195
                  AW  F E    YC++DV  T +L +RL              E ++  L     
Sbjct: 167 DYGEQEDAWAEFSEDMLIYCRQDVTVTCKLIRRLMKEFPDASFKAMQLEHEIQWLMSQQE 226

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR------------------- 236
             G++ D+    +L   +  +R+ + + +V        S+                    
Sbjct: 227 RNGFKFDVAKAEQLYFKLLGDRETIRQKLVDKFGTWYASNGVTTPKRSMNRMGMSYTAGA 286

Query: 237 QTYALRMYLFLITGID----------------LVDMSEGTLKSILSHSNITQ---LAKDL 277
               L+   F     D                         + +LSH  + +   L +  
Sbjct: 287 PYTKLKEVTFNPASRDHCAKVLQEAGVIFTEFTDGNKPKIDEEVLSHIKLPEAEMLNEFF 346

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +LN+     +           V+ +G + G++   GA  TGR          +P      
Sbjct: 347 MLNKRIGQIAEGN--QAWLRLVTPEGFIHGSINPNGAV-TGRALHSHPNIAQVPSGRAP- 402

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWI 392
                                      R C    +G  L+ +D +G+E R L      W 
Sbjct: 403 ----------------------YGQECRECFTVPDGWVLLGSDASGLELRCLGNRMFPW- 439

Query: 393 AGEDWKIKAFANGEDIY---VTTYAKA-FNTPIDKVSKE---QRAIGKVMELALGYQGG 444
             +           DI+           +    DK + +   +R   K    A  Y GG
Sbjct: 440 --DKGAYNKVILEGDIHWENAQAAGFVDYGVIRDKHNPDHELRRGKAKTFIYAFLYGGG 496


>gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411]
 gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411]
          Length = 793

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/436 (13%), Positives = 128/436 (29%), Gaps = 78/436 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L  +   + G       E   +++ S  +  +  +        +          
Sbjct: 364 PGFVQPLAEWQGSVPG--QYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTV 421

Query: 293 -------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                    +   V  DG +   LQ    + TGR S  +   QNLP+ ++SE        
Sbjct: 422 DPETGETKGMLSLVGKDGIVHHQLQMVN-TVTGRLSSALPNLQNLPKGDKSE-------- 472

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             V++  ++   G  +V +D   +E  V   ++G+   I     
Sbjct: 473 ------------------VKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRA 514

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++    A+      D V +  +   K +E  +        + +  S           
Sbjct: 515 GLDMHCKRLAQKEGVSYDYVFERAKDK-KHIEYIV--------WNSKRSKAKGF------ 559

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           + +          A +  + + +      ++D++     E  K+  +   + ++     +
Sbjct: 560 SFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNLVPSKMYI 619

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
           T  +   V      S  R  +  R  M + +    +      +L +S        +    
Sbjct: 620 TSSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPVQGTG 679

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----IVLTVHDEIVSE-TPD 638
            + M+                    +   ++     G       IV TVHD    +  P+
Sbjct: 680 GEWMKAA------------------MALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPE 721

Query: 639 TPYFSVGTLCSLMTKN 654
               S+  L + M + 
Sbjct: 722 VAKESMALLHACMEEA 737


>gi|68069867|ref|XP_676845.1| DNA polymerase 1 [Plasmodium berghei strain ANKA]
 gi|56496719|emb|CAH97694.1| DNA polymerase 1, putative [Plasmodium berghei]
          Length = 842

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 22/246 (8%)

Query: 202 DLDLVLKLQELIA-QERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           D D+  K+ EL   ++  +++  I  +     I   ++  AL+     +  I + ++ + 
Sbjct: 606 DHDISEKINELSNYKKNDEMNNKIKIRQYSNTINEMKRNKALQTN-NKMLKIIIDELEKN 664

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR-LRGTLQFYGASRTG 318
                     I Q+  ++ L R  S       +  L + +  + + +       GAS TG
Sbjct: 665 NYIGEKEKEKIKQIINNIKLYR-ESKKLFQNYIENLPKHIQKNTKKIHCNFNQLGAS-TG 722

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+           +   +L   E     +       +S       K L+ 
Sbjct: 723 RLSCDQPNLQNI-------HSKFRCTISLKFNELKPTSIQKQDIKNKSV-----NKNLLT 770

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D   +E  V+A+++ ++  +K   N  D++V T    FNT  ++V+KE R + K +   
Sbjct: 771 FDYKQMELFVMAYLSFDNQLLKMLNNS-DVFVET-KVLFNT--NEVTKELRRMTKTVIYG 826

Query: 439 LGYQGG 444
           + Y   
Sbjct: 827 ILYGQS 832


>gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +      ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEIFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----L 292
               +   L    G      +E T K+ +  + +  +  DL   +L +    I K    +
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTE-TGKAKVDETILESI--DLPEAQLIAEYLMIQKRVGLI 116

Query: 293 NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++  + V     R+ G +   G + TGR +        +P                    
Sbjct: 117 DSWLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------- 155

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++A P G      RS     +G +L+  DL+GIE R LA    +    +   NG DI+ 
Sbjct: 156 SVAKPYGKEC---RSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 563

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 92/305 (30%), Gaps = 57/305 (18%)

Query: 176 RLIPLSDGERDLWLLDQTINDRG----------YRIDLDLVLKLQELIAQERKKLDEDIV 225
           R+  L   E    L+   +N  G             DL           +   +L +++ 
Sbjct: 141 RMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVS 200

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   G+ +       ++S+  H  +  L +   L R+  +
Sbjct: 201 AAFGRRVRPDLPADVVKA--FAQAGVKVSSTRRWEIESV-DHPAVKPLLEYKKLYRIWVA 257

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  + L + V  DGR R      G + +GRW         +P+             
Sbjct: 258 HG----WSWLQDWV-RDGRFRPEF-HAGGTVSGRWVSHGGGALQIPK------------- 298

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 299 -----------------VIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 341

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y +   + F           R   K+  L   Y   +       +       +    
Sbjct: 342 TDLYQSVSDRVF--------SGDRDRAKLAVLGAVYGQTSGDGLKNLAALRRRFPRAVAY 393

Query: 466 VKSTS 470
           V   +
Sbjct: 394 VDEAA 398


>gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLTFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVRDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G +LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDGGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 577

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 92/305 (30%), Gaps = 57/305 (18%)

Query: 176 RLIPLSDGERDLWLLDQTINDRG----------YRIDLDLVLKLQELIAQERKKLDEDIV 225
           R+  L   E    L+   +N  G             DL           +   +L +++ 
Sbjct: 155 RMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVS 214

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   G+ +       ++S+  H  +  L +   L R+  +
Sbjct: 215 AAFGRRVRPDLPADVVKA--FAQAGVKVSSTRRWEIESV-DHPAVKPLLEYKKLYRIWVA 271

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  + L + V  DGR R      G + +GRW         +P+             
Sbjct: 272 HG----WSWLQDWV-RDGRFRPEF-HAGGTVSGRWVSHGGGALQIPK------------- 312

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 313 -----------------VIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 355

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y +   + F           R   K+  L   Y   +       +       +    
Sbjct: 356 TDLYQSVSDRVF--------SGDRDRAKLAVLGAVYGQTSGDGLKNLAALRRRFPRAVAY 407

Query: 466 VKSTS 470
           V   +
Sbjct: 408 VDEAA 412


>gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGSSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              +  P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVPAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 103

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L      D ++  T    G + TGR S      QN+P                     + 
Sbjct: 1   LLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP---------------------VR 38

Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
            P GL    +R   IAS     L+  D + IE R+LA  + +   ++
Sbjct: 39  SPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLME 82


>gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    +L   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVPYAEQLMMDLMFEMNSIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +  +   + 
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIGSW 119

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           LK      AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 120 LK------AVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 86/240 (35%), Gaps = 57/240 (23%)

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSRQ 237
             G+++D +   KL   +  E   ++ ++  +   I+                   +   
Sbjct: 2   RNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPGS 61

Query: 238 TYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAIL 290
              +   L    G+     +E       + +L   ++ +   +A+ ++L +       + 
Sbjct: 62  RKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR------VA 114

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++++  +AV  DGR+ G +   GA  TGR +        +P                   
Sbjct: 115 QIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------- 154

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
             ++ P G      RSC     G +LV  D +G+E R+LA    ++       NG DI+ 
Sbjct: 155 -AVSAPFGTEC---RSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 564

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 107/320 (33%), Gaps = 60/320 (18%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY--RID--LDLVLKLQEL---- 212
           +  + D  A  +   R+  L+  E    L+   +N  G   R D   DL+ +L       
Sbjct: 143 QQRRHDATAHPD---RMRLLTATESAGMLVAAEMNAAGLPWRADVHRDLLNELLGERYAG 199

Query: 213 --IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
               +   +L +++       +R    T  ++   F   GI +       ++S+  H  +
Sbjct: 200 GGEPRRLAELTDEVSAAFGRRVRPDLPTDVVKA--FAQAGIKVRSTRRWEIESV-DHPAV 256

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             L +   L R+  +       + L + V  DGR R      G + TGRW         +
Sbjct: 257 KPLLEYKKLYRIWVAHG----WSWLQDWV-RDGRFRPEY-LPGGTVTGRWVTNGGGALQI 310

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P+                               +R  ++A  G +LVVAD   +E RVLA
Sbjct: 311 PK------------------------------VIRRAVVADPGWRLVVADADQMEPRVLA 340

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I+ +   ++      D+Y +   +AF           RA  K+  L   Y   +     
Sbjct: 341 AISRDPGLMEVAGRESDLYQSVSDRAF--------SGDRAQAKLAVLGAIYGQTSGDGLK 392

Query: 451 MASHCGLDLQQFSQNVKSTS 470
             +       +    V   +
Sbjct: 393 NLAALRRRFPKAVAYVDDAA 412


>gi|254386231|ref|ZP_05001542.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194345087|gb|EDX26053.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 413

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 90/282 (31%), Gaps = 49/282 (17%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L + I       +R       ++   F   GI L       ++  + H  +  L 
Sbjct: 49  RRLAELADRISDAFGRRVRPDLPADVIKA--FAEAGIKLKSTRRWEIQE-IDHPAVEPLV 105

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L R+ ++       + L++ V  DGR R      G + TGRW         +P+  
Sbjct: 106 EFKKLYRIYTAHG----WSWLADWVH-DGRFRPEFIP-GGTFTGRWVTNGGGALQIPK-- 157

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD   +E RVLA I+ 
Sbjct: 158 ----------------------------VIRRAVVADPGWRLVVADADQMEPRVLAAISR 189

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++     ED+Y     + F           R + K+  L   Y   +       + 
Sbjct: 190 DPAFMEVAGRPEDLYTAISRQGF--------AGDRDMAKLAVLGAVYGQTSGDGLKNLAA 241

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                 +    V   +   +  +      W+    P  A  +
Sbjct: 242 LRRRFPRAVAYVDEAAKAGEEGRLV--RTWLGRTCPPPAASE 281


>gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 560

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 103/330 (31%), Gaps = 58/330 (17%)

Query: 152 HVQAWQLFGEYCKRDVEATRELF-KRLIPLSDGERDLWLLDQTINDRG----------YR 200
           H+    L   Y ++     R     R+  L+  E    L+   +N  G            
Sbjct: 127 HLPLADLLAVYAEQQRRHERAGHPDRMRLLTAAESAGMLVAAEMNRSGLPWRAEVHRAVL 186

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
            DL           +   +L +++       +R       ++   F   GI +    +  
Sbjct: 187 HDLLGERYAGGGEPRRLAELADEVSTAFGRRVRPDLPADVVKA--FAQAGIKVSSTRKWE 244

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           ++S+  H  +  L +   L R+  +       + L + V   GR R      G + TGRW
Sbjct: 245 IESV-DHPAVKPLLEYKKLYRIWVAHG----WSWLQDWVRE-GRFRPEF-LAGGTVTGRW 297

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
                    +P+                               +R  ++A  G +LVVAD
Sbjct: 298 VTNGGGGLQIPK------------------------------VIRRAVVADPGWRLVVAD 327

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
              +E RVLA I+ +   ++      D+Y +   +AF           RA  K+  L   
Sbjct: 328 ADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAF--------SGDRAQAKLAVLGAV 379

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           Y   +       +       +    V   +
Sbjct: 380 YGQTSGDGLKNLAALRRRFPRAVAYVDEAA 409


>gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +      ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----L 292
               +   L    G      +E T K+ +  + +  +  DL   +L +    I K    +
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTE-TGKAKVDETILESI--DLPEAQLIAEYLMIQKRVGLI 116

Query: 293 NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++  + V     R+ G +   G + TGR +        +P                    
Sbjct: 117 DSWLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------- 155

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++A P G      RS     +G +L+  DL+GIE R LA    +    +   NG DI+ 
Sbjct: 156 SVAKPYGKEC---RSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +      ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----L 292
               +   L    G      +E T K+ +  + +   A DL   +L +    I K    +
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTE-TGKAKVDETILE--AIDLPEAQLIAEYLMIQKRVGLI 116

Query: 293 NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++  + V     R+ G +   G + TGR +        +P                    
Sbjct: 117 DSWLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------- 155

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++A P G      RS     +G +L+  DL+GIE R LA    +    +   NG DI+ 
Sbjct: 156 SVAKPYGKEC---RSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|260878762|ref|ZP_05891117.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308091309|gb|EFO41004.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
          Length = 683

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 114/387 (29%), Gaps = 98/387 (25%)

Query: 143 PPYDCTRANHVQAWQ------LFGEYCKRDVEATRELFKRL-----------IPLSDGER 185
           P      A     W+      + G+YC +DV    ELF+RL             L + E 
Sbjct: 152 PTVKPKDAKKDPRWKGSIFTPMMGDYCMQDVRVNVELFRRLERKIHQLGYARSMLLEHEA 211

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--------------- 230
             W+L Q     G++ D +  +KL   +A  R+ L   +++   G               
Sbjct: 212 A-WVLAQQ-ERNGFKFDEEKAIKLLGRLAGRREYLYNKLIETFGGWWVSDGVSVPARTIN 269

Query: 231 --------------------IIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSH 267
                               +  +      +   L                   +SIL  
Sbjct: 270 YKDPTKPSRVQGAPFTKVKWVDFNPSSRRHIIKVLTDRGWTPQEFTPSGEAKVDESILKE 329

Query: 268 SNITQLAKDLILNRLASSGSAILKL--NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
            +  + A+ +    L       L          V  DG +RG++   GA  TGR +    
Sbjct: 330 LDFPE-ARLMAEWFLVQKRLGQLADGNQAWLNTVHPDGFIRGSVNPNGAV-TGRATHSFP 387

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
               +P                                 R      +G  L+ +D +G+E
Sbjct: 388 NVAQVP-----------------------SCSAEYGAECRELFTVPDGWYLLGSDASGLE 424

Query: 386 ARVLAWIA---GEDWKIKAFANGEDIYVTTY-AKAF------NTPIDKVSKEQRAIGKVM 435
            R LA       +   I    NG DI+ +   A  F        P + + +E R   K  
Sbjct: 425 LRCLANFMARYDDGKYIDVVLNG-DIHWSNAQAAGFIPKGTIRDPHNPIHEEARRKAKTF 483

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQF 462
             A  Y  GA++        G   +++
Sbjct: 484 IYAFLYGCGAELT---GQQVGWTEEEY 507


>gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G      ++ TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGR-VITNSAVTGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G +LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +      ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKITEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----L 292
               +   L    G      +E T K+ +  + +  +  DL   +L +    I K    +
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTE-TGKAKVDETILESI--DLPEAQLIAEYLMIQKRVGLI 116

Query: 293 NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++  + V     R+ G +   G + TGR +        +P                    
Sbjct: 117 DSWLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------- 155

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++A P G      RS     +G +L+  DL+GIE R LA    +    +   NG DI+ 
Sbjct: 156 SVAKPYGKEC---RSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|282866382|ref|ZP_06275427.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
 gi|282558778|gb|EFB64335.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
          Length = 568

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 123/378 (32%), Gaps = 73/378 (19%)

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
            F   S  + P+D          Q++    +R   A      RL  L+  E    L+   
Sbjct: 123 LFDPPSGTTVPFDALL-------QVYAGQVRRHDAAEHPDRMRL--LTASESAGLLVAAE 173

Query: 194 INDRGY--RID--LDLVLKLQEL------IAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           ++  G   R D   +++ +L           +   +  +++       +R       ++ 
Sbjct: 174 MHRSGLPWRADVHREVLDELLGERYAGGGEPRRLAEAADEVSAAFGRRVRPDLPADVVKA 233

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
             F   GI +       L+ +  H  +  L +   L R+ ++       + L++ V   G
Sbjct: 234 --FAQAGIKVRSTRRWELEKV-DHPAVEPLIRYKKLYRVWTAHG----WSWLTDWVRE-G 285

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R R   Q  G + +GRW+        +PR                               
Sbjct: 286 RFRPEYQP-GGTVSGRWTTNGGGALQIPR------------------------------V 314

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R  ++A  G +LVVAD   +E RVLA I+ +   ++   +  D+Y     +AF+     
Sbjct: 315 IRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYTALSDRAFH----- 369

Query: 424 VSKEQRAIGKVMELALGYQG----GAKVFKTMAS---HCGLDLQQFSQNVKSTSTFEDWE 476
                R   K+  L   Y      G K    +     H    + + ++  +       W 
Sbjct: 370 ---GDRDHAKIALLGAVYGQTSGDGLKNLAALRRRFPHAVAYVDEAAKAGEEGRLVRTWL 426

Query: 477 QAESHHLWMQDQYPEFAV 494
              S       +  E  +
Sbjct: 427 GRTSPPAAGAGESEEAGI 444


>gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A+ ++L + A+   + 
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRAAQIDSW 119

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           LK      AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 120 LK------AVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 48/240 (20%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL----DEDIVKLTDG------IIR 233
           ER+ ++ D    D G  +      ++ E++ + ++      +E   + T         + 
Sbjct: 1   ERNGFMFD---YDAGSCLYRRQKERMGEIVTELQEVFPPIVEERWSEKTGKRLKDKVEVF 57

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT---LKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      +   L    G+     +E     +      + +      LIL  L     + +
Sbjct: 58  NPASRQQIARRL-ESKGVVWEKRTEKGNIIVDETTLGAYVDVPEAVLILEYLTLGKRSAM 116

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +    +A  SDGR+ G +   G + TGR +        +P                   
Sbjct: 117 -VKGWLDAYESDGRIHGYVNSNG-TVTGRMTHSNPNMAQIP------------------- 155

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                    +    RSC +   G+KLV  D +G+E R+LA    +D   +   +G DI+ 
Sbjct: 156 ---------SGAEYRSCFVVPQGRKLVGVDASGLELRMLAHYMRDDAFTQEILDG-DIHT 205


>gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 566

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 100/332 (30%), Gaps = 59/332 (17%)

Query: 176 RLIPLSDGERDLWLLDQTINDRG----------YRIDLDLVLKLQELIAQERKKLDEDIV 225
           R+  L+  E    L+   +N  G             DL           +   +L +++ 
Sbjct: 149 RMRLLTAAESAGMLVAAEMNSAGLPWRADVHRQVLHDLLGERYAGGGEPRRLAELADEVS 208

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   G+ +       L   + H  +  L +   L R+  +
Sbjct: 209 AAFGHRVRPDLPAEVVKA--FARAGVKVRSTRRWEL-RSVDHPAVEPLLEYKRLYRIWVA 265

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  + L + V   GR R      G + TGRW         +P+             
Sbjct: 266 HG----WSWLQDWVRE-GRFRPEF-LAGGTVTGRWVTNGGGALQIPK------------- 306

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 307 -----------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRT 349

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y +   +AF           RA  K+  L   Y   +       +       +    
Sbjct: 350 SDLYQSVSDRAF--------AGDRAQAKLAVLGAVYGQTSGDGLKNLAALRRRFPRAVAY 401

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           V   +   +  +      W+    P  A   +
Sbjct: 402 VDEAARAGEEGRLV--RTWLGRTCPPAAANSE 431


>gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +      ++ ++ +    I+                   +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEAFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----L 292
               +   L    G      +E T K+ +  + +   A DL   +L +    I K    +
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTE-TGKAKVDETILE--AIDLPEAQLIAEYLMIQKRVGLI 116

Query: 293 NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++  + V     R+ G +   G + TGR +        +P                    
Sbjct: 117 DSWLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------- 155

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++A P G      RS     +G +L+  DL+GIE R LA    +    +   NG DI+ 
Sbjct: 156 SVAKPYGKEC---RSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 558

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 89/287 (31%), Gaps = 54/287 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L +++       +R       ++   F   GI +       L+  L H  +  L 
Sbjct: 205 RRLAELADEVSAAFGRRVRPDLPADVVKA--FARAGIPVKSTRRWELEE-LDHPAVEPLI 261

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               L R+ ++       + L + V   GR R   Q  G + +GRW+        +P+  
Sbjct: 262 AYKKLYRIWTAHG----WSWLQDWVRE-GRFRPEYQP-GGTVSGRWTTNGGGALQIPK-- 313

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD   +E RVLA I+ 
Sbjct: 314 ----------------------------VIRQAVVADPGWRLVVADADQMEPRVLAAISR 345

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++   +  D+Y     +AF           R   K+  L   Y   +       + 
Sbjct: 346 DRGLMEVAGHDGDLYKALSDRAF--------SGDREHAKLAMLGAIYGQTSGDGLKNLAA 397

Query: 455 CGL-------DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                      +   ++  +       W    S       Q  E  +
Sbjct: 398 LRRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPPAASAGQDEEAGL 444


>gi|227545493|ref|ZP_03975542.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227184527|gb|EEI64598.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 101

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A K  L       + + WR     ++Q W D+ +     ++     +         +   
Sbjct: 11  ATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTH------GMKFI 64

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                + + L S R L Y   K   +   + +   M
Sbjct: 65  YRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITFM 100


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1404

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 47/218 (21%)

Query: 277  LILNRLASSGSAILKLNTLSE----AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            L+L +     +A   L++        + SDG++R  +     S +   +      QN+P+
Sbjct: 1034 LLLQKQQLERNAARFLHSDPSGRLSVLHSDGKVRQLIDLTATSTSR-TTSSYPSCQNIPK 1092

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLA 390
             ++S                           +R   ++  G+K   V  D + +E  VLA
Sbjct: 1093 DDKS--------------------------PIRRLFVSRFGEKGRCVELDYSQLEIVVLA 1126

Query: 391  WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK----------EQRAIGKVMELALG 440
             + G+   +     G D ++   +     P D++ K          + R   K       
Sbjct: 1127 LLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRL 1186

Query: 441  YQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            Y  G     K            +++  +       F  
Sbjct: 1187 YGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHR 1224


>gi|239918065|ref|YP_002957623.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|281415754|ref|ZP_06247496.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|239839272|gb|ACS31069.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
          Length = 578

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 90/314 (28%), Gaps = 55/314 (17%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDI 224
            RL  L+  E    L+   I   G   D  +   L                  + L E I
Sbjct: 163 HRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLAEQLGPRPAPGERPARLQALAERI 222

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             +      S     +L   L    G+ +    +  LK  +      + A+  +L  L  
Sbjct: 223 ADVLGSPGLSPDSQPSLLRALQTA-GVAVESTRQWDLKHWIDAGGAEREARAALLAPLLE 281

Query: 285 SGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             +            L + +  DGR        G   TGRW+        +P        
Sbjct: 282 YKALARLWTANGWHWLDQWIGDDGRFHAAY-LVGGVVTGRWAAHGGGAMQVPAG------ 334

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR  + A  G  L VAD + +E R+LA +A ++   
Sbjct: 335 ------------------------VRDAVRADPGWTLTVADASQVEPRILAAMAADEVLA 370

Query: 400 KAFANGEDIYVTTYAK--AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +A     D+Y     +  A  T +       R   K+  L   Y         +  H   
Sbjct: 371 RAGTT-PDLYREVAEQGRAAGTALAD-----RGRAKIALLGAMYGSTTGDSAALMPHLRR 424

Query: 458 DLQQFSQNVKSTST 471
              +    ++  +T
Sbjct: 425 LYPRAIGLLERAAT 438


>gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDVMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A  ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVAHYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVVTNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    +D       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1417

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 47/218 (21%)

Query: 277  LILNRLASSGSAILKLNTLSE----AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            L+L +     +A   L++        + SDG++R  +     S +   +      QN+P+
Sbjct: 1047 LLLQKQQLERNAARFLHSDPSGRLSVLHSDGKVRQLIDLTATSTSR-TTSSYPSCQNIPK 1105

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLA 390
             ++S                           +R   ++  G+K   V  D + +E  VLA
Sbjct: 1106 DDKS--------------------------PIRRLFVSRFGEKGRCVELDYSQLEIVVLA 1139

Query: 391  WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK----------EQRAIGKVMELALG 440
             + G+   +     G D ++   +     P D++ K          + R   K       
Sbjct: 1140 LLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRL 1199

Query: 441  YQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            Y  G     K            +++  +       F  
Sbjct: 1200 YGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHR 1237


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 47/218 (21%)

Query: 277  LILNRLASSGSAILKLNTLSE----AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            L+L +     +A   L++        + SDG++R  +     S +   +      QN+P+
Sbjct: 1103 LLLQKQQLERNAARFLHSDPSGRLSVLHSDGKVRQLIDLTATSTSR-TTSSYPSCQNIPK 1161

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLA 390
             ++S                           +R   ++  G+K   V  D + +E  VLA
Sbjct: 1162 DDKS--------------------------PIRRLFVSRFGEKGRCVELDYSQLEIVVLA 1195

Query: 391  WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK----------EQRAIGKVMELALG 440
             + G+   +     G D ++   +     P D++ K          + R   K       
Sbjct: 1196 LLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRL 1255

Query: 441  YQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            Y  G     K            +++  +       F  
Sbjct: 1256 YGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHR 1293


>gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G ++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGSKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|302535235|ref|ZP_07287577.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
 gi|302444130|gb|EFL15946.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
          Length = 559

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 24/212 (11%)

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN--------------- 348
           R+   L   G     R +    Q + +P   R   +L + +                   
Sbjct: 236 RVHPPLGHPGDRPPRRRAAPGVQ-EAVPDLHRPRLVLARGLGPGRPLPPRVHPRRHPHRP 294

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
            G   A     +   +R  ++A  G +LVVAD   +E RVLA I+ +   ++     ED+
Sbjct: 295 LGHPTAAGPCRSPKVIRRAVVADPGWRLVVADADQMEPRVLAAISRDPAFMEVAGRPEDL 354

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y     + F           R   K+  L   Y   +       +       +    V  
Sbjct: 355 YTAVSRQGF--------SGDRDKAKIAVLGAVYGQTSGDGLKNLAALRRRFPRAVAYVDD 406

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
            +   +  +     L      P  A +    G
Sbjct: 407 AARAGEEGRLVRTWLGRTCPPPVGAAEADEAG 438


>gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    +        NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELRMLAHYMDDGDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 111/367 (30%), Gaps = 80/367 (21%)

Query: 160 GEYCKRDVEATRELFKRLI---PLSDGERDLWLLDQTI---NDRGYRIDLDLVLKLQELI 213
            +YC++D +A   L+K+++   P +D  R        I      G+  D +   +L   +
Sbjct: 63  QDYCEQDCQANWTLYKKIMSKRPSADSVRLEHEFAAVIRKQERIGFNFDTNKANQLLAKL 122

Query: 214 AQERKKLDEDIVK--------------------------LT---DGIIRSSRQT------ 238
              + +L+  +                            LT     I+ +          
Sbjct: 123 QGRQAELEAKLQTAFPPWEIKTPFTPKVNNKSRGYVKGVLTYKVKEIVFNPASRDHIADR 182

Query: 239 -YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              LR +   +         +  +   L +   + L +DL++N+    G     +N   +
Sbjct: 183 LQKLRCWKPELMTDQGKPKVDEAVLKTLDYPEASILNEDLLINKRI--GILATGVNGWLK 240

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V   G++ G +   GA+ TGR +         P                          
Sbjct: 241 MV-KGGKIHGRVNTNGAA-TGRCTHSKPNVAQTP-----------------------SVG 275

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAK 415
                  R    A  G  LV ADL+G+E R LA      +           DI+     K
Sbjct: 276 AAYGRECRELFHAPEGYSLVGADLSGLELRCLAHYMARFDSGSYADVVVNGDIHTLN-QK 334

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG-AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +   P        R   K       Y  G AK+   +        +  S+ +K+T   + 
Sbjct: 335 SAGLPT-------RNNAKTFIYGFLYGAGPAKIGSIVDGSEKEGRKLISKFMKATPAIKL 387

Query: 475 WEQAESH 481
              A S 
Sbjct: 388 LRTAVSE 394


>gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 562

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 87/256 (33%), Gaps = 47/256 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L +++       +R       +R   F   GI +       L+  + H  +  L 
Sbjct: 206 RRLAELADEVSAAFGHRVRPELPAEVVRA--FARAGIKVTSTRRWELEK-IDHPAVAPLL 262

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               L R+  +         L++ V  DGR R +    G + +GRW+        +P+  
Sbjct: 263 AHKKLYRIWVAHG----WQWLADWV-RDGRFRPSY-LPGGTVSGRWATNGGGALQIPK-- 314

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD   +E R+LA ++G
Sbjct: 315 ----------------------------VIRRAVVADPGWRLVVADADQLEPRILAAVSG 346

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++  +  +D+Y     +AF        +  R + K+  L   Y   +       + 
Sbjct: 347 DRALMEVASRPDDLYQAVSDRAF--------QGDRDLAKLAVLGAVYGQTSGDGLKNLAA 398

Query: 455 CGLDLQQFSQNVKSTS 470
                     +V   +
Sbjct: 399 LRRRFPAAVDHVDEAA 414


>gi|320156437|ref|YP_004188816.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
 gi|319931749|gb|ADV86613.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
          Length = 684

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 145/473 (30%), Gaps = 109/473 (23%)

Query: 70  AHNS-LFERILFKKTLGIDIPSKRWICTSVLAR-----------TNGLPSSLKNACLALN 117
            HN   ++  + KK  G+++P  +   T V AR            N    +L     + +
Sbjct: 65  GHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIKDIDQRNSGKYTLGKLFGSHS 124

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQA---WQ------LFGEYCKRDV 167
                 ++  G   +        D P YD T +    +    W+      + G+YC +DV
Sbjct: 125 LEAWGIRLG-GNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFTPMMGDYCMQDV 183

Query: 168 EATRELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
               +LF RL               E D   +       G++ D +  +KL   +A  R+
Sbjct: 184 RVNVDLFHRLERKAAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAIKLLGRLAGRRE 243

Query: 219 KLDEDIVKLTDG------------IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL- 265
            L  ++++   G             +       A R      T +  VD +  + + I+ 
Sbjct: 244 FLYGELIRTFGGWWVSEGVVVPERTVNYKNPLTASRTQGAPFTKVKWVDFNPSSRRHIIK 303

Query: 266 ----------------SHSNITQLAKDL--ILNRLASSGSAILKL--------NTLSEAV 299
                                  + KDL     +L +    + K               V
Sbjct: 304 VLTDRGWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQLADGNQAWLNTV 363

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DG +RG++   GA  TGR +        +P                            
Sbjct: 364 HPDGFIRGSVNPNGAV-TGRATHSFPNVAQVP-----------------------SCGAE 399

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA---GEDWKIKAFANGEDIYVTTY-AK 415
                R       G  L+ +D +G+E R LA       +   I    NG DI+     A 
Sbjct: 400 YGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDDGKYIDVVLNG-DIHWANAQAA 458

Query: 416 AF------NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            F        P + + +E R   K    A  Y  GA++        G   +++
Sbjct: 459 GFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAELT---GQQVGWTEEEY 508


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
            gambiense DAL972]
          Length = 1404

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 29/264 (10%)

Query: 256  MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
              + T++ +            L  ++L  +G  + KL  L          RG+  F  + 
Sbjct: 1004 KEKRTIEQLRKRHLDEATFVVLQRHKLEVAGLLLQKLQ-LE---------RGSANFLHSG 1053

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
              GR S  +    N  RQ   +   T T +  +   +  +        +R   ++  G+K
Sbjct: 1054 TDGRLS--ILHSDNKVRQYI-DLTATTTSRTTSSYPSCQNIPKDDKSSLRHLFVSRFGEK 1110

Query: 376  --LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE------ 427
               V  D + +E  V+A +  ++  +     G D +V   +       D++         
Sbjct: 1111 GRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYNGYKRGEA 1170

Query: 428  ----QRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                 R + K       Y  G     K            +++  +     S F    +  
Sbjct: 1171 KFLKLRKVAKTFSFQRLYGAGVPLLHKTTGIPVQDLQECIRREEEEYPGISRFHRLARTV 1230

Query: 480  SHHLWMQDQYPEFAVKDKLIGTAC 503
            +           F V+       C
Sbjct: 1231 ALRANNPGLPTHFIVELPTGLRVC 1254


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 29/264 (10%)

Query: 256  MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
              + T++ +            L  ++L  +G  + KL  L          RG+  F  + 
Sbjct: 1004 KEKRTIEQLRKRHLDEATFVVLQRHKLEVAGLLLQKLQ-LE---------RGSANFLHSG 1053

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
              GR S  +    N  RQ   +   T T +  +   +  +        +R   ++  G+K
Sbjct: 1054 TDGRLS--ILHSDNKVRQYI-DLTATTTSRTTSSYPSCQNIPKDDKSSLRHLFVSRFGEK 1110

Query: 376  --LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE------ 427
               V  D + +E  V+A +  ++  +     G D +V   +       D++         
Sbjct: 1111 GRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYNGYKRGEA 1170

Query: 428  ----QRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                 R + K       Y  G     K            +++  +     S F    +  
Sbjct: 1171 KFLKLRKVAKTFSFQRLYGAGVPLLHKTTGIPVQDLQECIRREEEEYPGISRFHRLARTV 1230

Query: 480  SHHLWMQDQYPEFAVKDKLIGTAC 503
            +           F V+       C
Sbjct: 1231 ALRANNPGLPTHFIVELPTGLRVC 1254


>gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 406

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 112/339 (33%), Gaps = 55/339 (16%)

Query: 180 LSDGERDLWLLDQTINDRGY--RIDLDLVLKLQELIAQERKKLDE--DIVKLTDGIIRSS 235
           L+  E    L+   +N  G   R D+   + L EL+ +      E   + +L D +  + 
Sbjct: 4   LTAAESAFMLVATEMNRAGLPWRADVHRAV-LHELLGERYAGGGEPRRLAELADEVSAAF 62

Query: 236 RQTYALRMYL-----FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            +     +       F   GI +       L+  + H  +  L +   L R+ ++     
Sbjct: 63  GRRVRPDLPADVVRAFAQAGIKVRSTRRWELEE-IDHPAVKPLIEYKKLYRIWTAHG--- 118

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             + L + V  DGR R      G S +GRW+        +P+                  
Sbjct: 119 -WSWLQDWV-RDGRFRPGY-LPGGSVSGRWTTNGGGALQIPK------------------ 157

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R  ++A +G +LVVAD   +E RVLA I+ +   ++   +  D+Y 
Sbjct: 158 ------------VIRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHDGDLYT 205

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           +   +AF           R   K+  L   Y   +       +       +    V   +
Sbjct: 206 SLSDRAF--------SGDRDHAKIALLGAIYGQTSGDGLKNLAALRRRFPRAVAYVDDAA 257

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
              +  +     L         A  D   G   E V+ A
Sbjct: 258 KAGEEGRLVRTWLGRTSPRAAGAGDDDEAGIPQEPVEAA 296


>gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A  ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVAHYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVVTNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    +D       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 2   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 61

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A  ++L +       +
Sbjct: 62  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVAHYMMLQKR------V 114

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 115 AQIDSWLKAVKDDGRVHGRVVTNGAV-TGRMTHQSPNMAQVP------------------ 155

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    +D       NG DI+
Sbjct: 156 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIH 209

Query: 410 V 410
            
Sbjct: 210 T 210


>gi|88856925|ref|ZP_01131576.1| DNA polymerase A [marine actinobacterium PHSC20C1]
 gi|88813801|gb|EAR23672.1| DNA polymerase A [marine actinobacterium PHSC20C1]
          Length = 517

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 107/322 (33%), Gaps = 52/322 (16%)

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDL-WLLDQ---TINDRGYRIDLDLVLKLQELIAQ 215
           G   ++     + L  ++        +L   LDQ       RG R+D++ + + Q+L   
Sbjct: 115 GPRARQAASLMKALALQVPAAGHLMMNLTVALDQAFRESQRRGVRVDVEGLREAQDLNRS 174

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
                  +   +    + +  Q  A+  +L    G D+         S+           
Sbjct: 175 VTAAATAE-DGIDLSAVGTDAQAEAVTGWLA---GRDITIRDFDGRPSLSRDFFDRAQIP 230

Query: 276 DLILNR--------LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           D    R         AS  SA L LN ++  +  DG +   +   GA +TGR        
Sbjct: 231 DSSEGRYFWGRFRAAASRRSARLSLNQIANNLHDDGHVFPMVHLRGA-KTGR-------- 281

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
                                 G      L   S   RS II  +G   +  D    E  
Sbjct: 282 ----------------------GSVTGPALTSLSKKYRSLIIPEDGAVFISLDFDRAEPT 319

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           V A ++ ++   +A +   D+Y     K F     +     RA  K + L + Y  GA+ 
Sbjct: 320 VAAALSQDEGLQEALST-TDVYRELAVKVFGEQARE-DDIARATCKTIFLGILYGRGAQ- 376

Query: 448 FKTMASHCGLDLQQFSQNVKST 469
              ++   G+   + ++ ++S 
Sbjct: 377 --GLSQQLGISKAEATETIRSV 396


>gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 542

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 132/365 (36%), Gaps = 50/365 (13%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV---KLTDGIIRSSRQTY 239
            E+D+    + + ++G   D ++V K    I     KL E      +L            
Sbjct: 110 AEQDVCDRYRKMFNKGAPFDAEVVCKAATAIEAMYLKLCEQASANGELERFFTVEVPAYR 169

Query: 240 ALRMYLFLITGIDLVDMSEG----------TLKSILSHSN--ITQLAKDLILNRLASSGS 287
            L++ +     ID + +SE            LK+  +  +  +   ++  + ++L   G 
Sbjct: 170 LLQLSMSAGISIDTIGLSEKRSQAEHDYFLALKAYSAKHDMPLETPSRRALESKLVLEGF 229

Query: 288 AILKL--NTLSEAVSSDGRLRG-TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            + ++    L E V  D    G T+       T R  G +    N+ R      ++    
Sbjct: 230 ELDEVSIEYLLEFVPHDRDFGGDTMALLALDVTRRVLGSLTLATNITRP-----VVDVFG 284

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
              +R +  +  L       RS I A  G KL   D    E  ++A ++G++   + +A 
Sbjct: 285 SRTSRVQLRSPSLQNIPKRYRSIISARTGAKLCYVDFDQFEVGIMAALSGDEELKRLYAA 344

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D+Y        NT +  V    R   K + L+  Y    K     A   G++ Q+  +
Sbjct: 345 G-DMYDLFA----NTHLGLV--NNRKAAKQLFLSYAYGMSRKALIDAAYSLGVERQKAKE 397

Query: 465 NVKSTSTFEDWEQAE---------------SHHL-----WMQDQYPEFAVKDKLIGTACE 504
             +    +EDW+++                +H+       +  +    AV   + GTA  
Sbjct: 398 AFRLFQRYEDWKRSIWAEFQGTGRVATVLGNHYRRIGKGQLSGKEQRSAVSQVVQGTASL 457

Query: 505 LVKKA 509
           + K+A
Sbjct: 458 IFKRA 462


>gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42]
          Length = 588

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 88/623 (14%), Positives = 163/623 (26%), Gaps = 131/623 (21%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPS 90
           + A   D   V  +D T       + L  L+D   +   HN + ++    K+       S
Sbjct: 22  IVAQDLDTNEVYKFDGTGDHPSIREGLALLKDADEL-WGHNIIGYDFEAIKEVFPRWNYS 80

Query: 91  KRWICTSVLARTN------------------GLPSSLKNACLALNFSEHLTKMEEGKALI 132
                T +L+R                     L             S H ++   GK+L 
Sbjct: 81  STVYDTLILSRLFFTDLLDRDFRSRPANMPAQLYGRHSLEAWGHRLSVHKSEF--GKSLS 138

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-------RLIPLSDGER 185
             +   S +   Y                 C RDV  +  L +               E 
Sbjct: 139 GDWSTYSPEMLDY-----------------CARDVVVSVSLARLFTAKVAEYRDCISTEH 181

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------------------- 226
            L  +       G+  D+    +L+  +  E  KL E + +                   
Sbjct: 182 RLATIMAWQESEGFPFDVAKAERLEGQLRSELLKLSEQMRETFPYVDGGSFTPRTNNGPR 241

Query: 227 -------LTDGIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNITQLAK 275
                  +      +      +  + F         +L D  +  +         T  AK
Sbjct: 242 GYVKGAAMCRLKEFNPTSRQHI-AWAFATFRDWEPKELTDTGKPKIDETTLLEYGTDEAK 300

Query: 276 D--LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
               IL      G      N   + V SDGR+  +      + TGR +        +P  
Sbjct: 301 TFARILELQKHLGQLSEGANAWLKKVESDGRIHHSCVLN--TNTGRQAHMKPNLAQVPSG 358

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                          R        +  V AD +G+E R L    
Sbjct: 359 HE----------------------------YRELFHPGANRSQVGADASGLELRCLGHYL 390

Query: 394 G--EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
              +  K        DI+     + + T         R  GK +   L Y GG       
Sbjct: 391 ARFDGGKFAKEVVQGDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLT 441

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD------KLIGTACEL 505
           A        +  + ++S     + +   + +  +Q++     +K       +L G     
Sbjct: 442 AGASKAQAVKKGKEIRS-RIMANLDGFAALNAAVQERAKSGVLKGLDGRPIRLQGKNHAA 500

Query: 506 VKKAWRAKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           +    ++    + +LW     +L +           +      +V      +  + + I 
Sbjct: 501 LNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHDEVHISVAPSQAEQAGQLIQIA 560

Query: 562 LPSSRRLVYSDVKGDCSYLNTAT 584
           +      +      D  Y    +
Sbjct: 561 MKDVEHQIKFRCALDSEYQIGNS 583


>gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 563

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 104/336 (30%), Gaps = 61/336 (18%)

Query: 146 DCTRANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRG------ 198
             T         ++ E  +R D  A  +   R+  L+  E    L+   +N  G      
Sbjct: 127 RGTPLPLPDILAVYAEQQRRTDATAHPD---RIRLLTAAESAGMLVAAEMNRTGLPWRAD 183

Query: 199 ----YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
                  DL           +   +L +++       +R       ++   F   G+ + 
Sbjct: 184 VHRAVLHDLLGERYAGGGEPRRLAELADEVSAAFGRRVRPDLPADVVKA--FAQAGVKVA 241

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 L+S+  H  +  L +   L R+  +       + L + V  DGR R      G 
Sbjct: 242 STRRWELESV-DHPAVAPLIEYKKLYRIWVAHG----WSWLQDWV-RDGRFRPEF-LAGG 294

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGRW         +P+                               +R   +A  G 
Sbjct: 295 TVTGRWVTNGGGALQIPK------------------------------VIRRAAVADPGW 324

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           +LVVAD   +E RVLA I+ +   ++      D+Y +   +AF           RA  K+
Sbjct: 325 RLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAF--------SGDRAQAKL 376

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
             L   Y   +       +       +    V   +
Sbjct: 377 AVLGAVYGQTSGDGLKNLAALRRRFPRAVAYVDDAA 412


>gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 37/183 (20%)

Query: 232 IRSSRQTYALRMYLFLI----TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           + +      +   L         I      +   KS+  ++NI + A  L+L  L  S  
Sbjct: 56  VFNPGSRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAA--LVLEYLTLSKR 113

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
            I  + +  +AV  DGR+ G +   GA  TGR +        +P +              
Sbjct: 114 -IGMVRSWLDAVGDDGRIHGRVNTCGAI-TGRMTHSSPNMAQIPSESL------------ 159

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            RSC     G KLV  D +G+E R+LA    +        +G D
Sbjct: 160 ----------------YRSCFTVDEGNKLVGIDASGLELRMLAHYMDDPEYTDLILHG-D 202

Query: 408 IYV 410
           I+ 
Sbjct: 203 IHT 205


>gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 571

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 74/516 (14%), Positives = 141/516 (27%), Gaps = 124/516 (24%)

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG----- 198
           P      + V+ +    +  + D  A  +   R+  L+  E    L+   +N  G     
Sbjct: 128 PVHVPLTDLVEVYA--DQQRRHDATAHPD---RMRLLTAAESAGMLVAAEMNRAGLPWRP 182

Query: 199 ---YRIDLDLVLK--LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
                +  +L+ +        +   +L E++       +R       ++   F   G+ +
Sbjct: 183 DVHREVLRELLGERYAGGGEPRRLAELAEEVSNAFGRRVRPDLPADVVKA--FARAGVRV 240

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
                  ++S+  H  +  L +   L R+  +       + L + V  DGR R     +G
Sbjct: 241 KSTRRWEIESV-DHPAVKPLLEYKKLYRIWVAHG----WSWLQDWV-RDGRFRPEFLAHG 294

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            + TGRW         +P+                               +R   +A  G
Sbjct: 295 -TVTGRWVTNGGGALQIPK------------------------------VIRRACVADPG 323

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            +LVVAD   +E RVLA I+ +   +       D+Y     +AF           R   K
Sbjct: 324 WRLVVADADQMEPRVLAAISRDPGLMDVAGRPGDLYQAVSDRAF--------SGDREQAK 375

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           +  L   Y   +       +                     +  A  +         E  
Sbjct: 376 LAVLGAVYGQTSGDGLKNLAALRR----------------RFPHAVRYVDDAARAGEEGR 419

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
           +    +G  C                               G      +  + P    + 
Sbjct: 420 LVRTWLGRTCPP---------------------AAGDPDAAGEEAGIPQADDGPGAPEQG 458

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRD---- 608
             +              S  +                    G+   N +VQ  + D    
Sbjct: 459 RGQGQETEWVPGYASTDSRAR--------------------GRFARNFVVQGSAADWTLL 498

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
           +L    +       ++V   HDE++   P     +V
Sbjct: 499 LLAALRRTLDGMAAELVFFQHDEVIVHCPAAETDAV 534


>gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 576

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 77/259 (29%), Gaps = 55/259 (21%)

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASR 316
           +    ++  + A+ ++  R           NT     +   V S D  +   L  +  + 
Sbjct: 195 NYFKKTHGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHEL-IHNKTN 253

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR +      QN+P++++S                           +R   ++  G+K 
Sbjct: 254 TGRLASANPNCQNIPKEDKS--------------------------PLREMFVSRYGEKG 287

Query: 376 -LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA--------------FNTP 420
             + AD + +E   LA +A +   ++   +  D +    A                 N  
Sbjct: 288 MCIEADYSQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMMRPDLQYTEVLLRAKKNKE 347

Query: 421 IDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            + V    R   K+      Y  G     +            +++  +  +    F    
Sbjct: 348 PEFVK--LRQQAKIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYRGVDAFNSMV 405

Query: 477 QAESHHLWMQDQYPEFAVK 495
              +++     Q     V+
Sbjct: 406 ALSANNFDASIQDGSRNVR 424


>gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +      ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----L 292
               +   L    G      +E T K+ +  + +   A DL   +L +    I K    +
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTE-TGKAKVDETILE--AIDLPEAQLIAEYLMIQKRVGLI 116

Query: 293 NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++  + V     R+ G +   G + TGR +        +P                    
Sbjct: 117 DSWLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------- 155

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++A P G      RS     +G +L+  DL+GIE R LA    +    +   NG DI+ 
Sbjct: 156 SVAKPYGKEC---RSLFTVEDGNRLIGCDLSGIELRCLAHHMQDPEWQEELLNG-DIHT 210


>gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL
            Brener]
 gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            cruzi]
          Length = 1607

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 77/259 (29%), Gaps = 55/259 (21%)

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASR 316
            +    ++  + A+ ++  R           NT     +   V S D  +   L  +  + 
Sbjct: 1226 NYFKKTHGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHEL-IHNKTN 1284

Query: 317  TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
            TGR +      QN+P++++S                           +R   ++  G+K 
Sbjct: 1285 TGRLASANPNCQNIPKEDKS--------------------------PLREMFVSRYGEKG 1318

Query: 376  -LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA--------------FNTP 420
              + AD + +E   LA +A +   ++   +  D +    A                 N  
Sbjct: 1319 MCIEADYSQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMMRPDLQYTEVLLRAKKNKE 1378

Query: 421  IDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
             + V    R   K+      Y  G     +            +++  +  +    F    
Sbjct: 1379 PEFVK--LRQQAKIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYRGVDAFNSMV 1436

Query: 477  QAESHHLWMQDQYPEFAVK 495
               +++     Q     V+
Sbjct: 1437 ALSANNFDASIQDGSRNVR 1455


>gi|262155784|ref|ZP_06028907.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
 gi|262030375|gb|EEY49016.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
          Length = 684

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 151/473 (31%), Gaps = 109/473 (23%)

Query: 70  AHNS-LFERILFKKTLGIDIPSKRWICTSVLAR-----------TNGLPSSLKNACLALN 117
            HN   ++  + KK  G+++P  +   T V AR            N    +L     + +
Sbjct: 65  GHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIQDIDQRNSGKYTLGKLFGSHS 124

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQA---WQ------LFGEYCKRDV 167
                 ++  G   +        D P YD T +    +    W+      + G+YC +DV
Sbjct: 125 LEAWGVRLG-GNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFTPMMGDYCMQDV 183

Query: 168 EATRELFKRL-IPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
               +LF RL   +++         E D   +       G++ D +  +KL   +A  R+
Sbjct: 184 RVNVDLFHRLERKVAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAIKLLGRLAGRRE 243

Query: 219 KLDEDIVKLTDG------------IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL- 265
            L  ++++   G             +       A R      T +  VD +  + + I+ 
Sbjct: 244 FLYNELIRTFGGWWVSDGVVVPERTVNYKNPLTASRTQGAPFTKVKWVDFNPSSRRHIIK 303

Query: 266 ----------------SHSNITQLAKDL--ILNRLASSGSAILKL--------NTLSEAV 299
                                  + KDL     +L +    + K               V
Sbjct: 304 VLTDRGWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQLADGNQAWLNTV 363

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DG +RG++   GA  TGR +        +P                            
Sbjct: 364 HPDGFIRGSVNPNGAV-TGRATHSFPNVAQVP-----------------------SCGAE 399

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLA-WIAGEDWK--IKAFANGEDIYVTTY-AK 415
                R       G  L+ +D +G+E R LA ++A  D    I    NG DI+     A 
Sbjct: 400 YGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDGGKYIDVVLNG-DIHWANAQAA 458

Query: 416 AF------NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            F        P + + +E R   K    A  Y  GA++        G   +++
Sbjct: 459 GFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAELT---GQQVGWTEEEY 508


>gi|111223189|ref|YP_713983.1| putative DNA polymerase I [Frankia alni ACN14a]
 gi|111150721|emb|CAJ62422.1| putative DNA polymerase I [Frankia alni ACN14a]
          Length = 669

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 88/290 (30%), Gaps = 64/290 (22%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQ------------ELIAQERKKLDEDIVKLTD 229
             E    LL + +   G  +D      L             + +A  R++    +  L  
Sbjct: 267 RAESAAELLARELERDGLPVDRATAETLLADLVGPPPRTDADELAARRRRDAPVLAHLRG 326

Query: 230 GI-IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGS 287
            + +R+     A         G+D+ D   G L+ +  +H  +  L       R+A++  
Sbjct: 327 PVDLRNPAAVRA----ALRTVGVDVPDTRSGRLEPLRDAHPAVAALLAWRRTERIATTYG 382

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                  L   V  DGRLRG       +  GR +       NLP                
Sbjct: 383 ----HRWLDTHVGPDGRLRGAWHGSDGAA-GRMTAQ-AGLHNLPAD-------------- 422

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R  ++A  G+  V ADL  IE RVLA ++ +     A     D
Sbjct: 423 ----------------LRCAVVAEPGRVFVRADLGQIEPRVLAVVSADPALAAATQAD-D 465

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +Y    A+             RA  KV  LA  Y                
Sbjct: 466 MYAPVAAQL---------GRDRAHAKVAMLAAMYGQTTGAAGEALRRMRR 506


>gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 78/238 (32%), Gaps = 55/238 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+  D  +  ++ E        ++  + ++   II                   +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLI----TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L         I      +   KS+  ++NI + A  L+L  L  S   I  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAA--LVLEYLTLSKR-IGMV 117

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            +  +AV  DGR+ G +   GA  TGR +        +P +                   
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGAI-TGRMTHSSPNMAQIPSESL----------------- 159

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       RSC   ++G KLV  D +G+E R+LA    +        +G DI+ 
Sbjct: 160 -----------YRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDPILHG-DIHT 205


>gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
 gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
          Length = 558

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 89/287 (31%), Gaps = 54/287 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L +++       +R       ++   F   GI +       L+  L H  +  L 
Sbjct: 205 RRLAELADEVSAAFGRRVRPDLPADVVKA--FARAGIPVKSTRRWELEE-LDHPAVEPLI 261

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               L R+ ++       + L + V   GR R   Q  G + +GRW+        +P+  
Sbjct: 262 AYKKLYRIWTAHG----WSWLQDWVRE-GRFRPEYQP-GGTVSGRWTTNGGGALQIPK-- 313

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD   +E RVLA I+ 
Sbjct: 314 ----------------------------VIRQAVVADPGWRLVVADADQMEPRVLAAISR 345

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++   +  D+Y     +AF           R   K+  L   Y   +       + 
Sbjct: 346 DRGLMEVAGHDGDLYKALSDRAF--------SGDREHAKLALLGAVYGQTSGDGLKNLAA 397

Query: 455 CGL-------DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                      +   ++  +       W    S       Q  E  +
Sbjct: 398 LRRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPPAASAGQDEEAGL 444


>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 536

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF    +R +E    L   L    + ER L  +   +   G R+D+  +  L   +A+E
Sbjct: 411 RLFANLWER-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEE 466

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
             +L+ ++ +L      +      L   LF   G+  +  +E T K   S + +  L + 
Sbjct: 467 IARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREA 525

Query: 277 LILNRLASSGS 287
             +        
Sbjct: 526 HPIVEKILQYR 536


>gi|257068677|ref|YP_003154932.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
 gi|256559495|gb|ACU85342.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
          Length = 590

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 93/306 (30%), Gaps = 57/306 (18%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           RL  L   E    L+   +   G   D+    ++               +   +   ++ 
Sbjct: 173 RLRLLVAAESAGALIAAELQAAGIPWDVAEHDRILSAALGPRPSPGTPPRRMVETGAEVR 232

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +     +        L   L    GID+   S+  LK    H  I  L +   ++RL ++
Sbjct: 233 EALGDPLVPLDSAPKLLRALH-RAGIDVASTSQWELKEH-QHPAIAPLLQYKKMSRLLTA 290

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                    L E V   GR R      G   TGRW+        +PRQ            
Sbjct: 291 NG----WTWLDEWVHE-GRYRPLYVPGGVV-TGRWASSGGGALQIPRQ------------ 332

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  + A  G  LV AD++ +E RVLA ++G+   I A   G
Sbjct: 333 ------------------LRPALRADPGWLLVSADVSQLEPRVLAAMSGDRAMIAA-GAG 373

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y              VS   R   K+  L   Y G       +            + 
Sbjct: 374 RDLYSGI------VEAGVVS--TRQEAKIGVLGALYGGTTGDSGRVVPRLRQTFPDAMRL 425

Query: 466 VKSTST 471
           V   + 
Sbjct: 426 VDDAAA 431


>gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +  E   ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEMNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+    M+E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERL-KGLGVTFNKMTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++   AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLGAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      R C     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1579

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 51/223 (22%)

Query: 273  LAKDLILNRLA-SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            + +   L +L  +   +      +   V S D  +   L  +  + TGR +      QN+
Sbjct: 1212 ILELRALEKLIGTYYESTDGGTGMVSLVHSMDSCIHHEL-IHNKTNTGRLASANPNCQNI 1270

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARV 388
            P++++S                           +R   I+  G K   + AD + +E   
Sbjct: 1271 PKEDKS--------------------------SLRDMFISRFGDKGMCIEADYSQLEVVA 1304

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKA--------------FNTPIDKVSKEQRAIGKV 434
            LA +A ++  ++   N  D +                      N   + V    R   K+
Sbjct: 1305 LAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKNKEPEFVK--LRQQAKI 1362

Query: 435  MELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                  Y  G     +          + +++ ++  +    F 
Sbjct: 1363 FSFQRQYGAGVRMLSQSTGLTQDQVRMLIEKENETYRGVEVFN 1405


>gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 33/181 (18%)

Query: 232 IRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           + +      +   L     +  D+    +  +       N       L+L  L  S   I
Sbjct: 56  VFNPGSRQQVADRLTAKDAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-I 114

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + +  +AV  DGR+ G +   GA  TGR +        +P +                
Sbjct: 115 GMVRSWLDAVGDDGRIHGRVNTCGAI-TGRMTHSSPNMAQIPSESL-------------- 159

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                          RSC   ++G KLV  D +G+E R+LA    +        +G DI+
Sbjct: 160 --------------YRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILHG-DIH 204

Query: 410 V 410
            
Sbjct: 205 T 205


>gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 37/183 (20%)

Query: 232 IRSSRQTYALRMYLFLI----TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           + +      +   L         I      +   KS+  ++NI + A  L+L  L  S  
Sbjct: 56  VFNPGSRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAA--LVLEYLTLSKR 113

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
            I  + +  +AV  DGR+ G +   GA  TGR +        +P +              
Sbjct: 114 -IGMVRSWLDAVGDDGRIHGRVNTCGAI-TGRMTHSSPNMAQIPSESL------------ 159

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            RSC   ++G KLV  D +G+E R+LA    +        +G D
Sbjct: 160 ----------------YRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILHG-D 202

Query: 408 IYV 410
           I+ 
Sbjct: 203 IHT 205


>gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 124/433 (28%), Gaps = 73/433 (16%)

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           W  T+  ART          C  L     + ++    A        +        +    
Sbjct: 52  WDDTAAWARTLIAAGVRVARCHDLRLCHAILRLSTQTADSELARLPAGPWDRAAPSEREP 111

Query: 153 VQAWQLFGEYCKRD------VEATRELFK----------RLIPLSDGERDLWLLDQTIND 196
             +  LF +    D      + A   L            RL  L   E    L+   ++ 
Sbjct: 112 SASATLFDDLDTSDGRSPDELVAELRLQLEAVAASAEPGRLRLLLAAESAGALVAAEMSA 171

Query: 197 RGYRIDLDLVLKLQELIAQERK----------KLDEDIVKLTDGIIRSSRQTYALRMYLF 246
            G   D  +   L   +   R           +L   + ++      +      +   L 
Sbjct: 172 DGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLAARVREILRAPDLNVDSPPDVLRAL- 230

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              GID     +  L+  + H  I  L +   L+RL ++        T  E    DGR  
Sbjct: 231 RRAGIDAASTRQWELQE-IDHPVIASLLEHKRLSRLLTANGW-----TWMETWIRDGRFH 284

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                 G   TGRW+        LPRQ                              +RS
Sbjct: 285 PEYVPGGVV-TGRWAASGGGALQLPRQ------------------------------IRS 313

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            + A  G +LVVAD A +E RVLA +A +     A   G D+Y              V  
Sbjct: 314 AVRADRGWRLVVADAAQLEPRVLAALAEDRAMADAGR-GTDLYQ-------GLVDAGVV- 364

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           + RA  KV  L   Y   +     +         + +  V+  +   +     S  L   
Sbjct: 365 DTRAHAKVAMLGAMYGATSGESGRLMPRLVRAYPRATGYVERAARAGESGAVVSTRLGRS 424

Query: 487 DQYPEFAVKDKLI 499
              P  A  D   
Sbjct: 425 SPPPGDAWVDVQQ 437


>gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 78/238 (32%), Gaps = 55/238 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+  D  +  ++ E        ++  + ++   II                   +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLI----TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L         I      +   KS+  ++NI + A  L+L  L  S   I  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAA--LVLEYLTLSKR-IGMV 117

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            +  +AV  DGR+ G +   GA  TGR +        +P +                   
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGAI-TGRMTHSSPNMAQIPSESL----------------- 159

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       RSC   ++G KLV  D +G+E R+LA    +        +G DI+ 
Sbjct: 160 -----------YRSCFTVADGNKLVGIDASGLELRMLAHYIDDPEYTDLILHG-DIHT 205


>gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis]
 gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis]
          Length = 203

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 27/160 (16%)

Query: 380 DLAGIEARVLAWIAGEDWKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
           D   IE R+LA ++ +   ++ F +    DI+    ++    P  KV  ++R   K +  
Sbjct: 1   DFQSIELRLLANLSDDPDLLRVFNDSTSIDIFTKLTSQWLGVPPVKVDFKERERTKRIVY 60

Query: 438 ALGYQGGAKVFK----TMASHCGLDLQQFSQNVKSTSTFED------------------- 474
           ++ Y  G +          +     ++ F       + F                     
Sbjct: 61  SVIYGVGRERLGNTLCVEPNEAKGFMESFLGKFPGINEFSRKCIEDCNTNGFVSTIFKRK 120

Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 +S    ++ Q    AV   + G+A +L K A   
Sbjct: 121 RWIPHIKSRDFQIRSQAERQAVNFVVQGSAADLCKSAMIQ 160


>gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 563

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 111/353 (31%), Gaps = 66/353 (18%)

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY--RID--LDLVLKLQEL-- 212
           + +  +R   A      RL  L+  E    L+   ++  G   R D   +L+  L     
Sbjct: 141 YADQLRRHDAAEHPDRMRL--LTASESAGTLVAAEMHRAGLPWRADVHRELLNGLLGERY 198

Query: 213 ----IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
                 +   +L +++       +R       ++   F   GI +       L+  L H 
Sbjct: 199 AGGGEPRRLAELADEVSAAFGRRVRPDLPADVVKA--FAQAGIRVKSTRRWELEE-LDHP 255

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  L     L R+ ++       + L + V   GR R   Q  G + +GRW+       
Sbjct: 256 AVEPLIAYKKLYRIWTAHG----WSWLQDWVRE-GRFRPEYQP-GGTVSGRWTTNGGGAL 309

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            +P+                               +R  ++A  G +LVVAD   +E RV
Sbjct: 310 QIPK------------------------------VIRQAVVADPGWRLVVADADQMEPRV 339

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA I+ +   ++   +  D+Y     +AF           R   K+  L   Y   +   
Sbjct: 340 LAAISRDRGLMEVAGHDGDLYKALSDRAF--------SGDREHAKLALLGAVYGQTSGDG 391

Query: 449 KTMASHCGL-------DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
               +            +   ++  +       W    S  +    Q  E  +
Sbjct: 392 LKNLAALRRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPPVVSAGQDEEAGI 444


>gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 78/238 (32%), Gaps = 55/238 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+  D  +  ++ E        ++  + ++   II                   +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLI----TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L         I      +   KS+  ++NI + A  L+L  L  S   I  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAA--LVLEYLTLSKR-IGMV 117

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            +  +AV  DGR+ G +   GA  TGR +        +P +                   
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGAI-TGRMTHSSPNMAQIPSESL----------------- 159

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       RSC   ++G KLV  D +G+E R+LA    +        +G DI+ 
Sbjct: 160 -----------YRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILHG-DIHT 205


>gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 37/183 (20%)

Query: 232 IRSSRQTYALRMYLFLI----TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           + +      +   L         I      +   KS+  ++NI + A  L+L  L  S  
Sbjct: 56  VFNPGSRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAA--LVLEYLTLSKR 113

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
            I  + +  +AV  DGR+ G +   GA  TGR +        +P +              
Sbjct: 114 -IGMVRSWLDAVGDDGRIHGRVNTCGAI-TGRMTHSSPNMAQIPSESL------------ 159

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            RSC   ++G KLV  D +G+E R+LA    +        +G D
Sbjct: 160 ----------------YRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILHG-D 202

Query: 408 IYV 410
           I+ 
Sbjct: 203 IHT 205


>gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1]
 gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1]
          Length = 793

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 126/436 (28%), Gaps = 78/436 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L  +     G       E   +++ S  +  +  +        +          
Sbjct: 364 PGFVQPLPEWQGSAPG--QYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTV 421

Query: 293 -------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                    +   V SDG +   LQ    + TGR S  +   QNLP+ ++SE        
Sbjct: 422 DPETGETKGMLSLVGSDGIVHHQLQMVN-TVTGRLSSALPNLQNLPKGDKSE-------- 472

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             V+   ++   G  +V +D   +E  V   ++G+   I     
Sbjct: 473 ------------------VKKLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRA 514

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++    A+      D V +  +   K ++  +        + +  S           
Sbjct: 515 GLDMHCKRLAQKEGVSYDYVFERAKDK-KHIDYIV--------WNSKRSKAKGF------ 559

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           + +          A +  + + +      ++D++     E  K+  +   + ++     +
Sbjct: 560 SFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGVPEYNKRTMKELERNLIPSKMYI 619

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
              +   V      S  R  +  R  M + +    +      +L +S        +    
Sbjct: 620 ASSYEVGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPVQGTG 679

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----IVLTVHDEIVSE-TPD 638
            + M+                    +   ++     G       IV TVHD    +  P+
Sbjct: 680 GEWMKAA------------------MALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPE 721

Query: 639 TPYFSVGTLCSLMTKN 654
               S+  L + M + 
Sbjct: 722 VAKESMALLHACMEEA 737


>gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +  E   ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEVNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+    M+E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERL-KGLGVTFNKMTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++   AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLGAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      R C     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|85708302|ref|ZP_01039368.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
 gi|85689836|gb|EAQ29839.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
          Length = 515

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 104/352 (29%), Gaps = 75/352 (21%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT--- 238
           + E   + L Q     G  ID   + + +     +     +D     D  I +  +    
Sbjct: 155 NVEVPAYRLLQLSMSAGISIDTSGLSEKRGQAEHDYFVFLKDYSANHDMPIETPSRRRIK 214

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             L    F + G+ +  + E            +T LA D     L S   +      L +
Sbjct: 215 AKLLQEGFELDGVSVDYILEFVPHDRDFGDDTLTLLALDAARKVLGSLTLSTNTTRPLVD 274

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
              S              RT R        QN+P++                        
Sbjct: 275 VFGS--------------RTSRVQIRSPNLQNIPKKY----------------------- 297

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  RS I + +  +L   D    E  ++A ++G++   + +A G D+Y        
Sbjct: 298 -------RSIINSRDDAQLCYVDFDQFEVGIMAALSGDEMLKELYAAG-DMYELFATTQL 349

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                    + R   K + L+  Y    K     A   G++ Q+  +  +    +EDW++
Sbjct: 350 GL------VDNRKAAKQLFLSYAYGMSRKALVDAAVSLGVERQKAKKAFRQFRGYEDWKR 403

Query: 478 AE--------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                                      +  +    AV   + GTA  + K+A
Sbjct: 404 TVWTEFQKAGRVSSILGNHFRREGQGQLTGKEQRSAVSQVVQGTASLIFKRA 455


>gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas
           phage Xp10]
 gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10]
          Length = 794

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/436 (13%), Positives = 128/436 (29%), Gaps = 78/436 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
                 L  +   + G       E   +++ S  +  +  +        +          
Sbjct: 364 PGFVQPLAEWQGSVPG--QYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTV 421

Query: 293 -------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                    +   V SDG +   LQ    + TGR S  +   QNLP+ ++SE        
Sbjct: 422 DPETGETKGMLSLVGSDGIVHHQLQMVN-TVTGRLSSALPNLQNLPKGDKSE-------- 472

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             V++  ++   G  +V +D   +E  V   ++G+   I     
Sbjct: 473 ------------------VKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDIALIADLRA 514

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++    A+      D V +  +   K +E  +        + +  S           
Sbjct: 515 GLDMHCKRLAQKEGVSYDYVFERAKDK-KHIEYIV--------WNSKRSKAKGF------ 559

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           + +          A +  + + +      ++D++     E  K+  +   + ++     +
Sbjct: 560 SFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNLIPSKMYI 619

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
              +   V      S  R  +  R  M + +    +      +L +S        +    
Sbjct: 620 ASSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPVQGTG 679

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----IVLTVHDEIVSE-TPD 638
            + M+                    +   ++     G       IV TVHD    +  P+
Sbjct: 680 GEWMKAA------------------MALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPE 721

Query: 639 TPYFSVGTLCSLMTKN 654
               S+  L + M + 
Sbjct: 722 VAKESMALLHACMEEA 737


>gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+     L   +      ++ ++ ++   I+                   +  
Sbjct: 1   ERNGFKLDVPEAQILHATLIDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----L 292
               +   L    G      +E T K+ +  + +   A DL   +L +    I K    +
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTE-TGKAKVDETILE--AIDLPEAQLIAEYLMIQKRVGLI 116

Query: 293 NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++  + V     R+ G +   G + TGR +        +P                    
Sbjct: 117 DSWLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------- 155

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++A P G      RS     +G +L+  DL+GIE R LA    +    +   NG DI+ 
Sbjct: 156 SVAKPYGKEC---RSLFTVEDGNRLIGCDLSGIELRRLAHYMQDPEWQEELLNG-DIHT 210


>gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 683

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 122/446 (27%), Gaps = 114/446 (25%)

Query: 155 AWQLFGE----YCKRDVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYRIDLD 204
            W  F +    YC +DV  T  L+KR+            E  +  L       G+  + +
Sbjct: 154 EWLEFSQEMLDYCVQDVVVTSALWKRILGKNYSPRALALEHRVAWLMAAQERNGFHFNRE 213

Query: 205 LVLKLQELIAQERKKL----------------------------------DEDIVKLTDG 230
               L   +AQ R  L                                   E  VKL   
Sbjct: 214 KAAILYAKLAQRRGDLERELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQ 273

Query: 231 IIR-----------------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSI--- 264
                                     +      +   L  + G      ++G    +   
Sbjct: 274 PAFTQVGWFEKYTEGTRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDE 333

Query: 265 ----LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
               L++     L + L++ +  S  +   +   L   V   GR+ G++   GA+ TGR 
Sbjct: 334 VMSKLNYPPCKLLTEYLLVAKRISQLAEGKQAWML---VEKQGRIHGSVNPNGAA-TGRA 389

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +        +P                        P G+     R      +G  LV AD
Sbjct: 390 THAYPNVAQVP--------------------ASGSPYGIDC---RELFTVPHGWLLVGAD 426

Query: 381 LAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPIDK------VSKEQRAIG 432
            +G+E R LA      +  K        DI+     +A     +K      + K  R   
Sbjct: 427 ASGLELRCLAHFMARYDGGKYVDILLNGDIHWANV-QAMGITSEKRDDHNTLHKLYRDGA 485

Query: 433 KVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           K    A  Y  G +        M +        +   +      +D    E+     +  
Sbjct: 486 KTFIYAFLYGAGDEKVGTIVYGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAGKKL 545

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKH 514
              F  K   +    + VK+A +  H
Sbjct: 546 KATFLRKTPALKKLVKAVKEAAKRGH 571


>gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1578

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 51/223 (22%)

Query: 273  LAKDLILNRLA-SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            + +   L +L  +   +      +   V S D  +   L  +  + TGR +      QN+
Sbjct: 1211 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHEL-IHNKTNTGRLASANPNCQNI 1269

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARV 388
            P++++S                           +R   I+  G K   + AD + +E   
Sbjct: 1270 PKEDKS--------------------------SLRDMFISRFGDKGMCIEADYSQLEVVA 1303

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKA--------------FNTPIDKVSKEQRAIGKV 434
            LA +A ++  ++      D +                      N  ++ V    R   K+
Sbjct: 1304 LAVLASDEQMLEDLRQNVDFHCKRVTMMRPDLKYTDVLQRAKKNKELEFVK--LRQQAKI 1361

Query: 435  MELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                  Y  G     +          + +++ ++  +    F 
Sbjct: 1362 FSFQRQYGAGVRMLSQSTGLTQDQVRMLIEKENETYRGVEVFN 1404


>gi|260906871|ref|ZP_05915193.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brevibacterium linens BL2]
          Length = 613

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 94/306 (30%), Gaps = 57/306 (18%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGY-----RIDLDLVLK-----LQELIAQERKKLDEDIV 225
           RL  L   E    L+   +   G        D  L  +      ++    +   + + + 
Sbjct: 174 RLRLLLAAESAGGLVAAEMQAAGVPWDIAEHDRILAEELGPRPARDAKPAKMLAVADQVR 233

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                   +      L   L    GI++   S+  L+   +H+ I  L +    +RL S+
Sbjct: 234 AALGDPRANLDSHVKLLHSLHAA-GINVASTSKWELQES-NHAAIAPLLEYKKQSRLLSA 291

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                    L E VS  GR R      G   TGRW+        +PRQ            
Sbjct: 292 NG----WAWLDEWVSE-GRYRPVYVPGGVV-TGRWAASGGGALQIPRQ------------ 333

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  + A  G +L+ AD+A +E R LA ++G+    +A   G
Sbjct: 334 ------------------LRPALRADPGWRLISADVAQLEPRALAAMSGDRAMAEAGR-G 374

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y            + +    R   K+  L   Y         +              
Sbjct: 375 RDLYS-------GLVDEGIVA-TRQEAKIAVLGAMYGSTTGDSGRLVPRLRTSFPAAMGL 426

Query: 466 VKSTST 471
           V S + 
Sbjct: 427 VDSAAE 432


>gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 57/241 (23%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D+    KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDVSYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +   L    G+     +E         +   +       +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
              ++ P G      RSC     G  LV  D +G+E R+LA    ++       NG DI+
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNVLVGIDASGLELRMLARYMDDEDYTNEILNG-DIH 208

Query: 410 V 410
            
Sbjct: 209 T 209


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 89/563 (15%), Positives = 160/563 (28%), Gaps = 86/563 (15%)

Query: 34  AYAWDDEPVKLWDRTEQSAMP--SDLLQYLRDETVMCVAHNSLFERILFKKTLGID---- 87
           A+   D  V      +    P   + ++ + D   + +  N +F+      +  I     
Sbjct: 58  AWRHGDGRVHSV-LLDPDRTPHHDEAVREIYDSAEVIILQNGVFDLPALLHSGLITPEQI 116

Query: 88  -------IPSKRWICT---SVLARTNGLPSSLK----NACLALNFSEHLTK-MEEGKALI 132
                  +   R I T      + T  +   L        + L F     K  ++G   +
Sbjct: 117 REKFLDTLLPARMIDTSSPMARSLTMLVKRHLGVEELTGGIELAFKAAGYKRQQDGYEGM 176

Query: 133 ARFCKGSIDSPPYDC--TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                        D   T A     ++   +        +R    R       ER +  L
Sbjct: 177 DIDSPIYRLGAMADTVMTLALWPVLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERMITEL 236

Query: 191 DQ--TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--LTDGIIRSSRQTYALRMYLF 246
               T   +G  +D   + +  + +  +R++    +    L  G  + S+    L     
Sbjct: 237 RIVGTRVAKGVNVDRGALERYADSVEDDRRRATATLAAVGLEGGKGKESKIIEYLASVGH 296

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
           L    D      G LK+                  LA        L  +       GR  
Sbjct: 297 LPA--DWPRTPSGKLKATKDLMEGLGDPIATAQRTLAHMDQLTGYLEKVEAQSQVTGRCH 354

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
             +   GA+ TGR S                                  PL   S   R+
Sbjct: 355 PQISVAGAAATGRMSISSP------------------------------PLQQFSGPARA 384

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            + A  G+++   D + IE   +A +AG+   +  FA G D+Y          PI + + 
Sbjct: 385 ILTADEGQRMWSVDWSQIEPVTMALLAGDSEFLAPFAAGADLYE---------PIMRAAG 435

Query: 427 EQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ----- 477
            +R + KV+ L   Y  GA                  +Q    +  +S F    Q     
Sbjct: 436 IERKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQLRRQMFAAMPESSKFMSRVQTLGDT 495

Query: 478 ------AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL--QLWKDLTEGFA 529
                 A    L +   +   A      GTA +++ +      +  L   +   + +   
Sbjct: 496 HGKIVTAGKRVLDVDSGFGYKATNYICQGTALDILTETIIELDRRGLGDSMLWWMHDEIL 555

Query: 530 CVVQEGGSISARRVANVPRLVMR 552
                  +   + V  +    MR
Sbjct: 556 VSGPPEVAREVQEVMEIVPDFMR 578



 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ--LMRERT 592
           G +  A  + + P   ++  ++    +  SS+ +      GD         +  L  +  
Sbjct: 453 GAAKIAETIGHTPESAVQLRRQMFAAMPESSKFMSRVQTLGDTHGKIVTAGKRVLDVDSG 512

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSL 650
           +G K T  I Q  + DIL E +    + G    ++  +HDEI+   P      V  +   
Sbjct: 513 FGYKATNYICQGTALDILTETIIELDRRGLGDSMLWWMHDEILVSGPPEVAREVQEV--- 569

Query: 651 MTKNPSWAKGLP 662
           M   P + +  P
Sbjct: 570 MEIVPDFMRTWP 581


>gi|288924467|ref|ZP_06418439.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
 gi|288344186|gb|EFC78743.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
          Length = 457

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 70/209 (33%), Gaps = 47/209 (22%)

Query: 250 GIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
           GID+ D     L ++  +H  +  L +     R+A++         L E V +DGRLRG 
Sbjct: 250 GIDVPDTRSWRLTALRAAHPAVDALLRWRRAERVATTYG----FRWLDEHVGADGRLRGE 305

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            +    +  GR +       NLP                                +R  +
Sbjct: 306 WRGSDGAA-GRMTA-AAGLHNLPAD------------------------------LRVVV 333

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G + V ADL  IE RVLA ++G+     A     D+Y    A+             
Sbjct: 334 VAEPGHQFVRADLGQIEPRVLAVVSGDRELAAATGQD-DLYAPVAARL-GVD-------- 383

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL 457
           R   KV  LA  Y   +            
Sbjct: 384 RPTAKVAVLAAMYGQTSGTAGQALRQMRR 412


>gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 571

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 74/226 (32%), Gaps = 45/226 (19%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F   G+ L       L   L H  +  L     L R+ ++       + L + V  DGR 
Sbjct: 243 FAQAGVRLKSTRRWELAE-LDHPAVEPLIAYKKLYRIWTAHG----WSWLQDWV-RDGRF 296

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R      G + +GRW+        +P+                               +R
Sbjct: 297 RPEY-LPGGTVSGRWTTNGGGALQIPK------------------------------VIR 325

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             ++A +G +LVVAD   +E RVLA I+ +   ++   + +D+Y     +AF        
Sbjct: 326 RAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHPDDLYTRLSDRAF-------- 377

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
              R   K+  L   Y   +       +       +    V   + 
Sbjct: 378 SGDRDHAKIALLGAIYGQTSGDGLKNLAALRRRFPRAVAYVDEAAK 423


>gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 894

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 59/176 (33%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+  +A  G+ LV AD + IE R+LA ++                              +
Sbjct: 616 RAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------I 645

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF----SQNVKSTSTFEDWEQAES 480
           S   R   K +  A+ Y    +      S  G+++++     S  ++  +  + +  +  
Sbjct: 646 SSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEVKEATALRSSFLRHFAGVQSFITSSL 705

Query: 481 HH-------------------------LWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           HH                         + ++ +     V   + G+A +L+K A  
Sbjct: 706 HHARRHGFITTGLLGRRRPISGLASNDVRLRAEAERKVVNSIVQGSAADLIKMAMT 761


>gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG]
          Length = 406

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 109/387 (28%), Gaps = 90/387 (23%)

Query: 162 YCKRDVEATRELFKRLIPLS--------DGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           YCK+DV    +++ +L              E  +  +       G+ +D D+  ++    
Sbjct: 43  YCKQDVAINEKVYLQLKDELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTC 102

Query: 214 AQERKKLDEDIVK---------------------------LTDGIIR-----------SS 235
            +E  +++ +I +                           L    ++           + 
Sbjct: 103 LRETNRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNL 162

Query: 236 RQTYALRMYLFLITGIDLVDMSEG-----------TLKSILSHSNITQLAKDLILNRLAS 284
                +   L  +     V    G           T+      +     A  ++  R   
Sbjct: 163 GSPVQVNKRLDRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLETRWKL 222

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-QERSEEILTQT 343
           +   + K           GR+ G +   GA  T R +       N+P      + IL + 
Sbjct: 223 AQEWLQKSQ-------ETGRVHGRVILTGAV-THRAAHQGPNMANIPSVPHGKDGILWKM 274

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G+     R       GK LV  D AGI+ RVLA    +    +   
Sbjct: 275 -------------EGMYGAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQVI 321

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDL 459
           +G DI+       FN        + R   K    A     G  +  ++           +
Sbjct: 322 DG-DIHT------FNKEALGRFCKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAM 374

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             F + + +    +      +   W++
Sbjct: 375 SNFYEAIPALKKLKSQASQAASMGWIK 401


>gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5]
 gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5]
          Length = 583

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 71/502 (14%), Positives = 145/502 (28%), Gaps = 125/502 (24%)

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
           ++ ++  +    D+  + +  +        L               H ++   GK L   
Sbjct: 80  YDTLILSRLFFTDLLDRDFR-SKPANMPGNLYGRHSLEAWGHRLGVHKSEF--GKQLDGD 136

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-------ERDL 187
           +   S +                   EYC +DV  + ++ +   P  +        E  L
Sbjct: 137 WSTYSPEML-----------------EYCAQDVTVSVQVAQMFEPKLEQYADCIDTEHRL 179

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK---LTDGIIRSSRQTYALRMY 244
             +       G+  D+    +L+  +  E   L + +       DG   + R+    + Y
Sbjct: 180 ATIMAWQEREGFPFDVTAAQQLESRLRTELDALSDQMRSTFLFVDGGTFTPRRNNKPQGY 239

Query: 245 LFLITGIDL-------------------------------VDMSEGTLKSILSHSNITQL 273
           +       L                                 + E TL + +        
Sbjct: 240 IADAPMCKLKEFNPTSRHHIAWAFQQFRNWEPKEFTDSGKPKIDEPTLTA-IGTDEAKAF 298

Query: 274 AKDLILNR----LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           A+ L L +    LA   +A LKL +        GR+  +      + TGR +        
Sbjct: 299 ARILELQKHLGQLAEGKNAWLKLES-------KGRVHHSCVLN--TNTGRQAHMRPNLAQ 349

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                            ++   R+     + +  V AD +G+E R L
Sbjct: 350 VP----------------------------SASEYRALFGPGDSRVQVGADASGLELRCL 381

Query: 390 AWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444
           A      ++          DI+    +  + T         R  GK +   L Y GG   
Sbjct: 382 AHYLAPFDNGSFAETVVNGDIHTELAS-IYGTD--------RKSGKGVTYCLIYGGGDHK 432

Query: 445 ----AKVFKTMASHCGLDLQ-QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
               A   K  AS  G +++ +  +++   +   D     +    ++          +L 
Sbjct: 433 LGSTAGASKAQASKKGKEIRGRIMRDLDGFAALSDAVSRRARTGVLRGLDGRPI---RLQ 489

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
           G +   +    ++    + + W
Sbjct: 490 GKSHAALNYLLQSAGAVICKQW 511


>gi|70919502|ref|XP_733432.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56505224|emb|CAH83005.1| hypothetical protein PC300270.00.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 21/152 (13%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D   +E  V+A+++ +   +K   N  D++V T    FNT  + V+KE R + K +
Sbjct: 42  LLTFDYKQMELFVMAYLSFDSQLLKMLNNS-DVFVETAKVLFNT--NDVTKELRRMTKTV 98

Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ----- 486
              + Y     G AK      +     +  F     +   F   ++    ++        
Sbjct: 99  IYGILYGQSENGLAKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIG 158

Query: 487 ---------DQYPEFAVKDKLIGTACELVKKA 509
                          ++   + G A +++K A
Sbjct: 159 RKRLVDPTIKNKYRISMNTPIQGCAADIMKFA 190


>gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania
            infantum JPCM5]
          Length = 1579

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 55/225 (24%)

Query: 273  LAKDLILNRLA-SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            + +   L +L  +   +      +   V S D  +   L  +  + TGR +      QN+
Sbjct: 1212 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHEL-IHNKTNTGRLASANPNCQNI 1270

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARV 388
            P++++S                           +R   I+  G K   + AD + +E   
Sbjct: 1271 PKEDKS--------------------------SLRDMFISRFGDKGMCIEADYSQLEVVA 1304

Query: 389  LAWIAGEDWKIKAFANGEDIYV-----------TT-----YAKAFNTPIDKVSKEQRAIG 432
            LA +A ++  ++   N  D +             T       K      + V    R   
Sbjct: 1305 LAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKI--KEPEFVK--LRQQA 1360

Query: 433  KVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            K+      Y  G     +          + +++ ++  +    F 
Sbjct: 1361 KIFSFQRQYGAGVRMLSQSTGLTQDQVRMLIEKENETYRGVEVFN 1405


>gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum
           JPCM5]
          Length = 1073

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 55/225 (24%)

Query: 273 LAKDLILNRLA-SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
           + +   L +L  +   +      +   V S D  +   L  +  + TGR +      QN+
Sbjct: 706 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHEL-IHNKTNTGRLASANPNCQNI 764

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARV 388
           P++++S                           +R   I+  G K   + AD + +E   
Sbjct: 765 PKEDKS--------------------------SLRDMFISRFGDKGMCIEADYSQLEVVA 798

Query: 389 LAWIAGEDWKIKAFANGEDIYV-----------TT-----YAKAFNTPIDKVSKEQRAIG 432
           LA +A ++  ++   N  D +             T       K      + V    R   
Sbjct: 799 LAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKI--KEPEFVK--LRQQA 854

Query: 433 KVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           K+      Y  G     +          + +++ ++  +    F 
Sbjct: 855 KIFSFQRQYGAGVRMLSQSTGLTQDQVRMLIEKENETYRGVEVFN 899


>gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain
            Friedlin]
 gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major
            strain Friedlin]
          Length = 1577

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 55/225 (24%)

Query: 273  LAKDLILNRLA-SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            + +   L +L  +   +      +   V S D  +   L  +  + TGR +      QN+
Sbjct: 1210 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHEL-IHNKTNTGRLASANPNCQNI 1268

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARV 388
            P++++S                           +R   I+  G K   + AD + +E   
Sbjct: 1269 PKEDKS--------------------------SLRDMFISRFGDKGMCIEADYSQLEVVA 1302

Query: 389  LAWIAGEDWKIKAFANGEDIYV-----------TT-----YAKAFNTPIDKVSKEQRAIG 432
            LA +A ++  ++   N  D +             T       K      + V    R   
Sbjct: 1303 LAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKI--KEPEFVK--LRQQA 1358

Query: 433  KVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            K+      Y  G     +          + +++ ++  +    F 
Sbjct: 1359 KIFSFQRQYGAGVRMLSQSTGLTQDQVRMLIEKENETYRGVEVFN 1403


>gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1579

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 51/223 (22%)

Query: 273  LAKDLILNRLA-SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            + +   L +L  +   +      +   V S D  +   L  +  + TGR +      QN+
Sbjct: 1212 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHEL-IHNKTNTGRLASANPNCQNI 1270

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARV 388
            P++++S                           +R   I+  G K   + AD + +E   
Sbjct: 1271 PKEDKS--------------------------SLRDMFISRFGDKGMCIEADYSQLEVVA 1304

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---------KE-----QRAIGKV 434
            LA +A ++  ++   N  D +          P  K +         KE      R   K+
Sbjct: 1305 LAVLASDEQMLEDLRNNVDFHCKRVTMM--RPDLKYTDVLQRSKKIKEPEFVKLRQQAKI 1362

Query: 435  MELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                  Y  G     +          + +++ ++  +    F 
Sbjct: 1363 FSFQRQYGAGVRMLSQSTGLTQDQVRMLIEKENETYRGVEVFN 1405


>gi|323359890|ref|YP_004226286.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276261|dbj|BAJ76406.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 499

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 85/283 (30%), Gaps = 51/283 (18%)

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
           W +D      G  ++  L  +  + +    ++    +    D    S      L   L  
Sbjct: 108 WSVDAH----GELLERQLGERRGQALPARIEEAAGRVRAALDDPAASLDSQPRLLKSLH- 162

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
             G+ +   S   L     H  +  L     L RL ++         +SE V  DGR R 
Sbjct: 163 RVGLFVESTSRWELAEH-DHPVVAPLVSYKKLMRLYTANG----WTWMSEWV-RDGRFRP 216

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                G   TGRW+        +PRQ                              +R  
Sbjct: 217 VYVPAGVV-TGRWASSGGGALQIPRQ------------------------------LRVA 245

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           + A  G  LV AD+A +E RVLA +A +     A     D+Y           ++  +  
Sbjct: 246 VRADPGWTLVTADVAQLEPRVLAAMARDTALADAARR-RDLYS-------GV-VEAGAVA 296

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            RA  K+  L   Y         +         +    V   +
Sbjct: 297 TRAEAKIAMLGAMYGATTGESGRLLPRLRRTFPRAMALVDHAA 339


>gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440]
 gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440]
          Length = 695

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 88/300 (29%), Gaps = 47/300 (15%)

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDLILNRLASSG 286
           +      +   L  + G      ++G    +       LS+     L + L++ +  S  
Sbjct: 312 NPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLSYPPCKLLTEYLLVAKRISQL 371

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +   +   L   V   GR+ G++   GA+ TGR +        +P               
Sbjct: 372 AEGKQAWML---VEKQGRIHGSVNPNGAA-TGRATHAYPNVAQVPASGSP---------- 417

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFAN 404
                             R       G  LV AD +G+E R LA      +  K      
Sbjct: 418 -------------YGKDCRELFTVPLGWLLVGADASGLELRCLAHFMARYDGGKYVDILL 464

Query: 405 GEDIYVTTYAKAFNTPIDK------VSKEQRAIGKVMELALGYQGGAKVFKT----MASH 454
             DI+     +A     +K      + K  R   K    A  Y  G +   T    M + 
Sbjct: 465 NGDIHWANV-QAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGTIVFGMVAK 523

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                  +   +      +D    E+     +     F  K   +    + VK+A +  H
Sbjct: 524 AKALGLDYQHLLDVFFNGQDNPDEEALKAAGKKLKATFLRKTPALKKLVKAVKEAAKRGH 583


>gi|269956874|ref|YP_003326663.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305555|gb|ACZ31105.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 546

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 81/234 (34%), Gaps = 48/234 (20%)

Query: 215 QERKKLDEDIVKLTD-GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
              + L   I +L D     +     +L   L    GI +  +S+  L  +  H  +  L
Sbjct: 186 ARLEALAVRIRELLDAPPTLNPDSHPSLLKAL-QYAGIGVRSLSQWELMEV-QHPVVEPL 243

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            +   L+RL  + +    L+T       DGR R      G   TGRWS        LP+ 
Sbjct: 244 MEYKKLSRL-LTANGWNWLDTWVR----DGRFRSEYVVGGVV-TGRWSSVGGGALQLPK- 296

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR  ++A  G  LVVAD+A +E RVLA ++
Sbjct: 297 -----------------------------EVRRAVVADPGWTLVVADVAQLEPRVLAAMS 327

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
            +D    A   G D+Y              V+   R + KV  L   Y G    
Sbjct: 328 RDDAMAAAGR-GGDMYAGI------VASGAVA--TRDLAKVGMLGAMYGGTTGA 372


>gi|313631118|gb|EFR98659.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 56

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
              Y         ++ TYGGKL ENIVQAI+RD L   ++     G
Sbjct: 8   QICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAG 53


>gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
 gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
          Length = 191

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 30/190 (15%)

Query: 415 KAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469
           K F     D+V+ + R   K     + Y     G A+            +  + +     
Sbjct: 2   KIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKV 61

Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             + +                       Q  S +  ++      A+   + G+A +++K 
Sbjct: 62  HDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKV 121

Query: 509 AW----RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
           A     +A  +  LQ    L      + +   +  A+    VP+++       V + + S
Sbjct: 122 AMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLAVPLKVES 181

Query: 565 SRRLVYSDVK 574
                + D K
Sbjct: 182 HYGPTWFDAK 191



 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M    K          ++L VHDE++ E P      +G L   +M
Sbjct: 111 IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 167


>gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 443

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 71/252 (28%), Gaps = 29/252 (11%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 98  AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 150

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 151 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 204

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G+Y   + + T  L +               L+D E  L  +  
Sbjct: 205 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 264

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 265 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 323

Query: 253 LVDMSEGTLKSI 264
           ++  +     S 
Sbjct: 324 ILSKTATGQAST 335


>gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 601

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 71/252 (28%), Gaps = 29/252 (11%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A      +++   P +L    ++  +   L   L D     V  ++ F   L        
Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +   +     +                +       T+ +    +        I+      
Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470

Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192
             A  +     A +  G+Y   + + T  L +               L+D E  L  +  
Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I  +G  +D +L+      +  +   L+ +   +      +      L + L+   G+ 
Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589

Query: 253 LVDMSEGTLKSI 264
           ++  +     S 
Sbjct: 590 ILSKTATGQAST 601


>gi|159046195|ref|YP_001541867.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
 gi|157913954|gb|ABV95386.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
          Length = 516

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 112/361 (31%), Gaps = 56/361 (15%)

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKR 176
             ++  + E   A    F KG    P      A  + + +    E  K   EA R     
Sbjct: 98  LEQYGAEQEVCSAYKRMFNKGLPFEPGVASKAAEALAKMYLALLERAKLTGEAER----- 152

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                  E  ++ L Q+    G  +D   + +++     +     ++     D  + +  
Sbjct: 153 ---FLTVEVPVYRLLQSAMAVGIMVDRQRLSEMRAEAEHDYFTCLKNYSAKHDMPLETPN 209

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
              AL   L    G +L D+S   L   + H        D I  + A +   +L    LS
Sbjct: 210 -RSALEEKL-RADGFELDDVSIEYLLEYVPHQR--DFGSDTIALQAADTARRVLGSLALS 265

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             +     +R  L  +G SRT R        QN+ ++                       
Sbjct: 266 TTI-----MRPVLDVFG-SRTSRIHLRSPSLQNMSKKY---------------------- 297

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   R  I    G +L   D    E  ++A ++ +   +K +A G D+Y       
Sbjct: 298 --------RGIIAGREGAELSYVDFDQYEVGIMAALSKDCELMKLYAAG-DMYDLFATTH 348

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                       R   K + L+  Y    K     A   G+D  +        + +E W+
Sbjct: 349 LGL------SGNRKAAKQLFLSYAYGMSKKALIDAAVSLGVDRTRAKNAFGLFAQYETWK 402

Query: 477 Q 477
           +
Sbjct: 403 R 403


>gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 429

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 43/224 (19%)

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL----AKDLILNRLASSG 286
            + +      +   L    G      ++     +L+   + +L    AK L    L    
Sbjct: 49  EVFNPGSRQQIVDRLKKKYGWVPESKTDKGNP-VLNDDVLEKLPYPEAKPLAEYMLLKKR 107

Query: 287 SAILKL--NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              +K   N   + VS DG + G +   G   TGR S        +P             
Sbjct: 108 LGQIKDGNNAWIKLVSPDGYIHGDMVTNGCI-TGRCSHRNPNTAQIPAGYSP-------- 158

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA-WIA---GEDWKIK 400
                               RS   A +   L+ +D   +E R LA ++A   G ++   
Sbjct: 159 ---------------YGKECRSLFHAPDDWILIGSDAKALELRCLAGYLAFWDGGEYGQM 203

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
              +  DI+     + F         E R I K +  A+ Y  G
Sbjct: 204 VTDDSVDIHTYN-QEKFGV-------ETRDISKRLLYAVLYGAG 239


>gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 56/227 (24%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVXDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
              ++ P G      RSC     G  LV  D +G+E R+LA    ++
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELRMLAHYMDDE 196


>gi|229472265|gb|ACQ72647.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 29/172 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G  +V ADL+GIE R+LA      +D +        DI+     K       
Sbjct: 13  RRLFCASPGHIMVGADLSGIELRMLAHYLARYDDGRYGDILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKSTSTF 472
                 R + K +  A  Y  G +              A   G +++Q +   +      
Sbjct: 70  ------RRLVKTVTYAFLYGAGDQRIGESYDQSLPPDKAKQKGKEIRQAYMDAIPGLEKL 123

Query: 473 EDWEQAESHHLWMQDQYPEF--------AVKDKLIGTACELVKKAWRAKHQG 516
            +  +  +   +++              A+   L  +A  + K+     +  
Sbjct: 124 VEATKKAADRGFIRSIDGRHINVDSSHKALNMLLQSSAGCIAKRWMVIANDN 175


>gi|47934776|gb|AAT39826.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VSAPYGKEC---RSFRCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934770|gb|AAT39823.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVLPPIVEERWSEKTGKRLKNKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLGGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934614|gb|AAT39745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934636|gb|AAT39756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934640|gb|AAT39758.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934764|gb|AAT39820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934772|gb|AAT39824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934774|gb|AAT39825.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934778|gb|AAT39827.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934810|gb|AAT39843.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934832|gb|AAT39854.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 56/227 (24%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+++D +   KL   +  E   ++ ++  +   I+                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ---LAKDLILNRLASSGSAI 289
               +   L    G+     +E       + +L   ++ +   +A+ ++L +       +
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPEAKXIARYMMLQKR------V 113

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++  +AV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 114 AQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNMAQVP------------------ 154

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
              ++ P G      RSC     G  LV  D +G+E R+LA    ++
Sbjct: 155 --AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELRMLAHYMDDE 196


>gi|47934768|gb|AAT39822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934780|gb|AAT39828.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNGILSG-DIHT 208


>gi|47934766|gb|AAT39821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 78/238 (32%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           +  P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VPAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 626

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 102/352 (28%), Gaps = 92/352 (26%)

Query: 151 NHVQAWQLFGE----YCKRDVEATRELFKRLIPLSDG-------ERDLWLLDQTINDRGY 199
           ++ +AW+++ E    Y K+DV  T  L+K       G       E     L   + + G+
Sbjct: 141 DNEEAWEVYNEDMLEYNKQDVRVTYALYKSFQDRIKGMEQAILLEHKAQWLMTKMEENGF 200

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKL---------------------TDGIIR----- 233
             D+   LKL + + Q  +++D  I  +                         I+     
Sbjct: 201 PFDIPDALKLVKTLRQRAEEIDTQISAVVPKIPDKVFTPKRDNKRLGYKKGVPIQRYKPF 260

Query: 234 SSRQTYAL-------------RMYLFLITG-IDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           +      +             +  L+   G + + + +   ++         +    L  
Sbjct: 261 NPNSRQQIEWIFRTHYNYTPDKADLYTEEGRLKIDESTFEYIEKDEKAPQGAKKIAPLFE 320

Query: 280 NRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            RL          +      + V SDG++ G +   G + TGR +        +P     
Sbjct: 321 ERLMLCKRLGQLADGKQAWLKHVKSDGKIHGRVNPNG-TVTGRATHSNPNVAQVPH---- 375

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGE 395
                           +  P G      R       G      D  G+E R LA  ++  
Sbjct: 376 ----------------VGTPYGEEC---RKLFNVPQGWTQAGIDACGLELRCLAHYLSPY 416

Query: 396 DWKIKAFA-NGEDIYVT--TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           D    A      DI+ +    A              R + K    A  Y  G
Sbjct: 417 DKGKYAHEVVHGDIHTSNQKAA---GLAT-------RNLAKTFIYAFLYGAG 458


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 132/476 (27%), Gaps = 123/476 (25%)

Query: 69  VAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
           V HN   F+           +   +   T V AR             A +  +   ++ E
Sbjct: 56  VFHNGQGFDIHAINHFYPGTLTPHQVWDTLVAARLLNPSER------ANSLDDWGKRLGE 109

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------ 181
            K     F + S +                   EY ++DV  TR+L+ +L P        
Sbjct: 110 YKGEFKDFSRFSKELV-----------------EYARQDVVVTRKLYHKLEPQLRNWGQS 152

Query: 182 -DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT------------ 228
            + E     +       G+ ++      L+  + QE   ++ ++ ++             
Sbjct: 153 FELENLFAYIISLQVQNGFHLNTGKARGLEAELRQEASDIERELQEVFPPRLIADKRKGT 212

Query: 229 ---------------------DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                                   I +          L           ++    + +  
Sbjct: 213 AEVMPKANRKAIRKGQPYSRLKLEIFNPGSRPQAADRLIKKYKWKPKKFTDKGSPA-IDE 271

Query: 268 SNITQLAKDLILNRLASSGSAILKL--------NTLSEAVSSDG-RLRGTLQFYGASRTG 318
           S + +L       ++ +    I KL        N   + V+ +  R+ G +   GA+ TG
Sbjct: 272 SVLAKL--KYPEAKVLNRYLRITKLLGQVVDGENGWLKLVNEETSRVHGAVNTIGAA-TG 328

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S        + +++                             +R C  A  G  LV 
Sbjct: 329 RCSHFKPNMAQVDKKDL---------------------------RMRECWEARPGWDLVG 361

Query: 379 ADLAGIEARVLAWIAG-------EDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRA 430
            D  G+E R+LA   G           ++     G D +              V   +R 
Sbjct: 362 VDAEGLELRMLAHYLGKFDGGALTRALLEGSKEAGTDAHT--------INQKAVGLHKRD 413

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             K +  AL Y  G      +      D ++   N+K        +  +     M+
Sbjct: 414 NAKRLLYALMYGAGD---VKLGQIIVDDAREAGINLKGNKKALGAKARKDLAKGMK 466


>gi|282554654|ref|YP_003347671.1| DNA polymerase [Klebsiella phage KP34]
 gi|262410487|gb|ACY66751.1| DNA polymerase [Klebsiella phage KP34]
          Length = 786

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 108/338 (31%), Gaps = 65/338 (19%)

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
           +R+D +   KL+            +I +L + I     +    R    L  G  +   S 
Sbjct: 330 FRLDTEE-KKLKWEDDLYFCPGLVNIQELPEVIREKYAERGEFRQARALQDGTPVYSTST 388

Query: 259 GTLKSILSH--------SNITQLAKDLILNRLASSGS---AILKLNTLSEAV---SSDGR 304
             ++++           + +  L KD     L +  +   ++ K + + + V   + DG 
Sbjct: 389 DAMEALARQGFEFCRLVNELGALEKDTGTYYLRTEYNEDGSVKKTSGMLQYVIPQNPDGS 448

Query: 305 --LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
             +   L    A+ TGR SG     QNLPR   S                          
Sbjct: 449 GIIHHRLNTC-ATVTGRLSGSNPNLQNLPRDGTSR------------------------- 482

Query: 363 CVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT--------T 412
            V+    +  G+  ++   D + +E  +     G+   +     G D++          T
Sbjct: 483 -VKQMFTSRFGESGRITEVDYSALEVVMGCVHTGDRKLLSLLQAGTDMHCYRLAFKEGKT 541

Query: 413 YAKAFNT------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y + ++       P  K  K+QR   K    A  Y       K +A   G  ++     +
Sbjct: 542 YEEMYDLCHNADGPDYKYWKQQRTDIKPPSFAAQYG---ATAKGIAFATGCTVEYAQSFL 598

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            + +    +         ++++      + +L     +
Sbjct: 599 DNEAKL--FPDTIGFRAVVKEEVERTGAEGRLYREQAD 634


>gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 132/476 (27%), Gaps = 123/476 (25%)

Query: 69  VAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
           V HN   F+           +   +   T V AR             A +  +   ++ E
Sbjct: 43  VFHNGQGFDIHAINHFYPGTLTPHQVWDTLVAARLLNPSER------ANSLDDWGKRLGE 96

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------ 181
            K     F + S +                   EY ++DV  TR+L+ +L P        
Sbjct: 97  YKGEFKDFSRFSKELV-----------------EYARQDVVVTRKLYHKLEPQLRNWGQS 139

Query: 182 -DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT------------ 228
            + E     +       G+ ++      L+  + QE   ++ ++ ++             
Sbjct: 140 FELENLFAYIISLQVQNGFHLNTGKARGLEAELRQEASDIERELQEVFPPRLIADKRKGT 199

Query: 229 ---------------------DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                                   I +          L           ++    + +  
Sbjct: 200 AEVMPKANRKAIRKGQPYSRLKLEIFNPGSRPQAADRLIKKYKWKPKKFTDKGSPA-IDE 258

Query: 268 SNITQLAKDLILNRLASSGSAILKL--------NTLSEAVSSDG-RLRGTLQFYGASRTG 318
           S + +L       ++ +    I KL        N   + V+ +  R+ G +   GA+ TG
Sbjct: 259 SVLAKL--KYPEAKVLNRYLRITKLLGQVVDGENGWLKLVNEETSRVHGAVNTIGAA-TG 315

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S        + +++                             +R C  A  G  LV 
Sbjct: 316 RCSHFKPNMAQVDKKDL---------------------------RMRECWEARPGWDLVG 348

Query: 379 ADLAGIEARVLAWIAG-------EDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRA 430
            D  G+E R+LA   G           ++     G D +              V   +R 
Sbjct: 349 VDAEGLELRMLAHYLGKFDGGALTRALLEGSKEAGTDAHT--------INQKAVGLHKRD 400

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             K +  AL Y  G      +      D ++   N+K        +  +     M+
Sbjct: 401 NAKRLLYALMYGAGD---VKLGQIIVDDAREAGINLKGNKKALGAKARKDLAKGMK 453


>gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 48/237 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR---SSRQTYALR--------- 242
              G+++D++    L+  +A     +++++  +   I+    S +    L+         
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60

Query: 243 ---MYLFLITGID-LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNT 294
                   + G+           + I+    +  +  D+   +L +    + K    ++ 
Sbjct: 61  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDI--DIPQAQLIAEYLMLQKRVGMIDA 118

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             + V     R+ G +   G + TGR +        +P   +                  
Sbjct: 119 WLKRVDEKTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKP----------------- 160

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   + +RS     +G  L   DL+GIE R LA    +D   +   NG DI+ 
Sbjct: 161 ------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 210


>gi|308178280|ref|YP_003917686.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745743|emb|CBT76715.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 549

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 88/313 (28%), Gaps = 69/313 (22%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL-------IAQERKKLDEDIVKL 227
           +RL  L   E    L+   +   G   D      L                KL     +L
Sbjct: 148 QRLELLIHAESVGALIACEMEAAGLSWDEAGHRALLREQLGPRVSDYGRPPKLAAKAQQL 207

Query: 228 T---DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +      L   L    G  +  +    L+  L+H  I ++ +   L+RLAS
Sbjct: 208 ATALGTPGLNPDSPQELLRALHKA-GFAVSSVRAWELEQ-LNHPLIAEVLEYKKLSRLAS 265

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +       +   +    +GR        G   +GRW+        LP             
Sbjct: 266 THG-----DAWLDQWVKNGRFHPHYVL-GTVTSGRWAASGGGALQLPH------------ 307

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R  +    G   VVAD   +E R+LA I+ +    KA   
Sbjct: 308 ------------------SIRQVVRTREGSTFVVADGRQLEPRILAAISNDQQLQKAGQQ 349

Query: 405 GEDIY------VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
             D+Y          +              R   K+  L++ Y GG      + +     
Sbjct: 350 D-DLYQWLLDAKLVAS--------------RNDAKLGMLSVIYGGGGGASGAVGAALTRS 394

Query: 459 LQQFSQNVKSTST 471
                + V+  + 
Sbjct: 395 FPTAMRFVEQAAA 407


>gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 52/239 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII-------------------RSS 235
              G++++    L+L  ++  +   +  ++  +   II                    + 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK---- 291
                +   L            +G++  I+    +  L  D    +  +    + K    
Sbjct: 61  GSRQQIAERLIEKGWKPTKRTEKGSV--IVDEEVLASL--DYPEAKALAEYMMLQKRIAQ 116

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++  EAV  DGR+ G +   GA  TGR +        +P                    
Sbjct: 117 IDSWLEAVGKDGRVHGRVITNGAV-TGRMTHMSPNMAQVPNSGSP--------------- 160

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        R       G KLV  D AG+E R+LA    ++       +G DI+ 
Sbjct: 161 --------YGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDNVYTHEVVSG-DIHT 210


>gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
          Length = 548

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 79/246 (32%), Gaps = 57/246 (23%)

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      +    F   G  +       LK  + H  +  L +   L+R+ S+       N
Sbjct: 218 NPDSPQQVLA-AFRKAGHPIETTRAWELK-TIDHPAVPPLLRYKELSRVHSAHG----WN 271

Query: 294 TLSEAVSSDG---------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            LSE V  DG         R R      G   TGRW+        +P+            
Sbjct: 272 WLSEWVG-DGPGGPDSPAKRFRPRYVVGGVV-TGRWATDGGAALQIPK------------ 317

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R+   A  G KLVVAD A +E R+LA ++ +   I A A 
Sbjct: 318 ------------------VIRAAATADAGHKLVVADAAQLEPRMLAAMSQDPGMIAA-AE 358

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            +D+Y       F+          R   K+  L+  Y G A     + +           
Sbjct: 359 ADDMYAALAPT-FD--------GSRDDAKIALLSAMYGGTAGNATALLTVMRRRFPTAYA 409

Query: 465 NVKSTS 470
            V+  +
Sbjct: 410 YVEQAA 415


>gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
          Length = 763

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 97/752 (12%), Positives = 206/752 (27%), Gaps = 151/752 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVK--LWDRTEQSAMPSDLLQ 59
           +D ET         G+    ++  + +  +    E     +K  ++    ++ +   ++ 
Sbjct: 40  LDSET--------TGLHIIKDKPFMWVFGWMLPKEKRTDEIKGRVFAFDSKAEILLQVI- 90

Query: 60  YLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
            L  + VM V HN  ++  +         +    K    T  L R +    S ++    L
Sbjct: 91  ALTKKCVMTVGHNVKYDLHMLINGGISEKVVYGLKNITDTMGLCRFSFDAVSARDGGDVL 150

Query: 117 NFSEHLTKM---------EEGKALIAR-----------FCKGSID------SPPYDCTRA 150
              +   K          +E K  + +             K             Y   + 
Sbjct: 151 GLKKVSEKYIDPKAGEFEKEVKKELRKINDAKRNILKELLKPYKGWGLGKIKEAYKVKKR 210

Query: 151 NHVQAWQL-------------------------FGEYCKRDVEATRE------------- 172
           N +  +                           F +Y + D +   E             
Sbjct: 211 NEMDYFTKEKKQRWLKVPEEIENVYFKWMEENPFADYSEVDRDIMMEYVHSDGIYTLELV 270

Query: 173 -------LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                  L ++   + + E  L +    +   G ++D+  +    +    E +KL E++ 
Sbjct: 271 EFTYSTVLKRKQKAILEQENKLIIELLKMERVGMKVDMPYLHSCFKKCEDEIQKLYEELW 330

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            +      +  Q   +  Y     G       +  LK          + +   L +  S+
Sbjct: 331 GIVGE-YFTVSQGTVIADYFEKKLGERPETTDKSFLKKHKDDRVSQLITRLRRLEKWQST 389

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
             +      + E    D         +  + +GR        Q  P++    E      +
Sbjct: 390 YISR-----IIEVAQYDNHFYTQYGQFN-TVSGRLGSDA---QQFPKERILTEEGELYEK 440

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIA-----GEDWK 398
               G+    P+       R   I   G   K+   DL+ IE R  A         +   
Sbjct: 441 ENGEGKA---PIEYEIFSPRRAFIVEGGNYNKIAYFDLSQIELRAQANYTVLLKKPDLNL 497

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG---GAKVFKTMASHC 455
            +A+   +  +  T            +KE+RA          Y+    G  V+       
Sbjct: 498 CRAYMPFKCTHYIT-----GEEFRYDTKEERAR--------WYEKKEDGTSVWLLENGES 544

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                  S+   +T     ++  + +  +           +K      +  KK WR   +
Sbjct: 545 WTPTDVHSETSHNTLMALAFKCVDKYKQY---------EHEKESPVDEKSFKKFWRYIGK 595

Query: 516 GVLQLWKDLTEGFACVVQ--EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +    ++   G     +  E     A  + +               V    ++  Y+  
Sbjct: 596 -MFNFMRNYGGGAKKASEALEVSMEIANALVSGWSNTFPEVSYYQKQVAAKVQKNSYATN 654

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYDI--VLT 627
                Y  + T +  +   Y       +VQ    D+L   +        +N      +  
Sbjct: 655 MYGRVYFLSNTDKAYKVGNY-------LVQGSCADMLKGYVIRIGEFLRENNCKTLPLAN 707

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659
           +HDE+         +    +  +M     W +
Sbjct: 708 IHDELQFLVHKGEEWIFPHIKRIMEDV-EWMQ 738


>gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F]
 gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F]
 gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F]
          Length = 723

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 83/276 (30%), Gaps = 37/276 (13%)

Query: 234 SSRQTYALRMYLFLITGIDLV--DMSEGTLK-SILSHSNIT--------QLAKDLILNRL 282
           +      L   L       +   D  +  +    L H  +         +L ++ ++ + 
Sbjct: 340 NPGSGDHLAKVLMERGWEPVDFTDTGKPVVDDETLEHVKLPDAEAQACVELVREYLVVQK 399

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
               +A  K N   + V  DGR+ G++   GA  TGR +        +P          +
Sbjct: 400 RIGQAAEGK-NAWLKLVGPDGRMHGSINPCGAV-TGRATHSSPNMAQVPANGAPYGETCR 457

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIK 400
              A        D                +    V  D +G+E R L   A   +     
Sbjct: 458 G--AFGAAWNKTDGK-------------PDPWIQVGVDASGLELRCLGNRAAPFDGGAYA 502

Query: 401 AFANGEDIY---VTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFK-TMAS 453
                 DI+         A N P DK + +    R   K    A  Y  GA      +  
Sbjct: 503 KTVVEGDIHWANAVNAGLAPNVPRDKSNHDHDAFRNNAKTFIYAFLYGAGAAKIGLIVGG 562

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
                     + ++ T   +D  +A S+ L  + ++
Sbjct: 563 GKKEGSALMKKFIEGTPAIKDLREAVSNTLISESKW 598


>gi|47934830|gb|AAT39853.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 78/238 (32%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D+     L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVKQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 48/237 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR---SSRQTYALR--------- 242
              G+++D++    L+  +A     +++++  +   I+    S +    L+         
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 60

Query: 243 ---MYLFLITGID-LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNT 294
                   + G+           + I+    +  +  D+   +L +    + K    ++ 
Sbjct: 61  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDI--DIPQAQLIAEYLMLQKRVGMIDA 118

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             + V     R+ G +   G + TGR +        +P   +                  
Sbjct: 119 WLKRVDEKTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKP----------------- 160

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   + +RS     +G  L   DL+GIE R LA    +D   +   NG DI+ 
Sbjct: 161 ------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 210


>gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 211

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 48/237 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR---SSRQTYALR--------- 242
              G+++D++    L+  +A     +++++  +   I+    S +    L+         
Sbjct: 2   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 61

Query: 243 ---MYLFLITGID-LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNT 294
                   + G+           + I+    +  +  D+   +L +    + K    ++ 
Sbjct: 62  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDI--DIPQAQLIAEYLMLQKRVGMIDA 119

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             + V     R+ G +   G + TGR +        +P   +                  
Sbjct: 120 WLKRVDEKTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKP----------------- 161

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   + +RS     +G  L   DL+GIE R LA    +D   +   NG DI+ 
Sbjct: 162 ------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 211


>gi|229472613|gb|ACQ72821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 29/172 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G  +V ADL+GIE R+LA      +D +        DI+     K       
Sbjct: 13  RRLFCASPGHIMVGADLSGIELRMLAHYLARYDDGRYGDILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKSTSTF 472
                 R + K +  A  Y  G +              A   G +++Q +   +      
Sbjct: 70  ------RRLVKTVTYASLYGAGDQRIGESYDQSLPPDKAKQKGKEIRQAYMDAIPGLEKL 123

Query: 473 EDWEQAESHHLWMQDQYPEF--------AVKDKLIGTACELVKKAWRAKHQG 516
            +  +  +   +++              A+   L  +A  + K+     +  
Sbjct: 124 VEATKKAADRGFIRSIDGRHINVDSSHKALNMLLQSSAGCIAKRWMVIANDN 175


>gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1]
 gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1]
          Length = 1050

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 89/297 (29%), Gaps = 69/297 (23%)

Query: 207 LKLQELIAQERKKLDED----IVKLTDGI----IRSSRQTYALRMYLFLITGIDLVDMSE 258
           L+L   + +  K+L  D       L  G+    I    +        F + G++ + MS+
Sbjct: 494 LRLMNEVRKANKELLSDSGFKAKSLFGGVSDKWIFQPTKPDHKAKLFFDVLGLEPLSMSK 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS----------SDGRLRG 307
            T K  +    I        +  L     A+ K+ +T  +A S          +D  LR 
Sbjct: 554 ITGKPQIDKEFIKHYKDKNKVVALYGEYQALTKVISTYVKAWSRRLNTALDESTDDSLRA 613

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                    TGR        Q +P +                        G  S  +++ 
Sbjct: 614 DYFLVD---TGRLGSKDPNLQQIPSR------------------------GPLSKLLKTL 646

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG---------------------- 405
            +A  G  LV  D +  E R+ +  +G+     AF  G                      
Sbjct: 647 FVARPGYLLVRFDYSAHEVRIWSVASGDKVIAAAFRTGLELRQAFIQDPSDANKKALKEK 706

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            D ++    + F   +DK     R   K +   + Y  GA+          +   + 
Sbjct: 707 GDFHILNVQRFFKKLVDKDHP-LRDAVKKVVFGVIYGKGAETLGEDTKEGDISSLRA 762


>gi|47934828|gb|AAT39852.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 51/237 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSGEHPH 208


>gi|121606814|ref|YP_984143.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595783|gb|ABM39222.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 530

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 104/300 (34%), Gaps = 55/300 (18%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           ++ E  ++ +       G RI+ + + + ++ I  E  K  +D     D  +        
Sbjct: 164 NEVEIPIFNILHKNITPGIRINQENLREHKKDIEYEYYKTLKDFSNKYDLPLEDPNDQTV 223

Query: 241 ---LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              L    F  +GI +  M       +         A+ +I  R  S+   +L   TLS+
Sbjct: 224 IDYLEYRDFDFSGISVDYM-------LQFVPTPDGFAEAVINLRKISASRHLLSALTLSK 276

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
             S+       +  +G S T R        QN+ ++ R                      
Sbjct: 277 KYST-----PVIDLFG-SITSRIYFKDPVFQNISKRHRD--------------------- 309

Query: 358 GLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                     +I  NG  L+   D    E  V+A ++ ++  +  + +GED+Y +   + 
Sbjct: 310 ----------VICPNGSNLLSYVDYDQFEVGVMAALSEDEILLSLY-SGEDLYESLLEQL 358

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F        K QR   K + L+  Y          A   G++  +  +  +  +TFE W+
Sbjct: 359 FG------EKNQRKFAKRLFLSYAYGMKLNRISDAAHAKGVERGKVKEFFRKLTTFEKWK 412


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 31/162 (19%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L   L DE+V+ VA N  ++ +L K+     I ++ +  T +++      P+      L+
Sbjct: 15  LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLEPAPARHGMDPLS 71

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        K ++     D  RA H         Y   D + T  
Sbjct: 72  EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 116

Query: 173 LFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDL 205
           L+  L P             ER L  +   +  RG  +D  +
Sbjct: 117 LWLVLKPGCARGLTSVYERLERPLLPVLARMEARGITVDRQI 158


>gi|47934834|gb|AAT39855.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 52/238 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 155 VSAPYGKEC---RSFWGVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934740|gb|AAT39808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934806|gb|AAT39841.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 50/237 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL---------------------TDGIIR 233
              G+ +D++    L + I  + +++ E + K+                     T+  + 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           S +Q       + +   +     +    + +L   +I +         L    + I    
Sbjct: 61  SRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWL 120

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           T  +    DGR+ G +   GA  TGR +        +P                      
Sbjct: 121 THEK----DGRVHGRVITNGAV-TGRMTHHSPNMAQVP---------------------- 153

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                      RS      G KL+  D +G+E R+LA    ++       +G DI+ 
Sbjct: 154 -SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|317124628|ref|YP_004098740.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
 gi|315588716|gb|ADU48013.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
          Length = 557

 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 92/546 (16%), Positives = 143/546 (26%), Gaps = 151/546 (27%)

Query: 149 RANHVQAWQLFGEYCKRDVEATRELF---------------KRLIPLSDGERDLWLLDQT 193
           RA+ + +W    E   R      E+                +RLI     E    +L   
Sbjct: 105 RADALGSWATTTERLARLAHLALEIQRVQEASLRERAGGRAERLIRTVWSESAAAVLCLE 164

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG---------------IIRSSRQT 238
           +   G  +D      L    A  R + D D  ++                   +R+    
Sbjct: 165 LERDGLPVDRLAAEDLISAAAGPRPRDDADAARIRALRDQVVLRHARGGDRTDLRNPAHV 224

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            A+        G+D+ +     L+          L   L+  R     +       L E 
Sbjct: 225 RAMLQ----SVGVDVPNTRAWVLEPYRHTH---PLVDALLSWRKDERIATTYGYRWLDEH 277

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V  D RLRG       +  GR +       NLP                           
Sbjct: 278 VGGDDRLRGAWTACDGAA-GRMTAQN-GLHNLPAP------------------------- 310

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R  I A      V ADL  +E RVLA ++ +    +A  +  D+Y     K   
Sbjct: 311 -----LRPAIRAEPQHVFVRADLGQVEPRVLAVVSEDRAFAEATRSD-DLYAPVADKL-G 363

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
                     R++ KV  LA  Y   +          G  L+             D   A
Sbjct: 364 VD--------RSVAKVAVLAAMYGQRSGA-------AGEALKDLEAAYPVAMGVLDRAYA 408

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           +      +     F  +    G+A +                  D T       QEG   
Sbjct: 409 DGV---ARRPLRTFGGRLIRFGSAGDAA----------------DPTRAEGHADQEGEPS 449

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             R                               + GD    + A  +  R         
Sbjct: 450 GIR-------------------------------LDGDRGAADAARGRFARNA------- 471

Query: 599 ENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCS--LMT 652
             I+Q  + ++               G  IVL +HDEI+   P +            L  
Sbjct: 472 --IIQGSAAELFKAWAATVRHAVRPLGGQIVLCLHDEILVHVPRSRAEEARRAVEGALTL 529

Query: 653 KNPSWA 658
            + +WA
Sbjct: 530 ASRTWA 535


>gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 81/237 (34%), Gaps = 48/237 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIV------------KLTDGIIRSSRQTYAL- 241
              G+++D+D    L+  ++     +++++             + T   ++     + L 
Sbjct: 1   ERNGFKLDIDACELLRAKLSDRMGIIEDEVQAVFPPIVEERWSEKTGKRLKDKITVFNLA 60

Query: 242 --RMYLFLITGID-LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNT 294
             +     + G+           + I+    +  +  D+   +L +    + K    +++
Sbjct: 61  SRKQIAERLMGLGWTPTKHTEKGQPIVDEGTLEDI--DIPQAKLIAEYLMLQKRVGMIDS 118

Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             + V     R+ G +   G + TGR +        +P   +                  
Sbjct: 119 WLKHVDKTTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKP----------------- 160

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   + +RS      G  LV +DL+G+E R L+    ++   +   NG DI+ 
Sbjct: 161 ------YGEEIRSLWTVDEGNVLVGSDLSGVELRCLSHYMQDEEWQEELLNG-DIHT 210


>gi|331697147|ref|YP_004333386.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326951836|gb|AEA25533.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 502

 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 83/250 (33%), Gaps = 48/250 (19%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +    L +DI       +        LR   F   G++L   +   +   + H  +  L 
Sbjct: 162 RRLAALADDIATAFGRPVNPDSPAEVLRA--FGRVGVELPS-TRSWVLKQVDHPAVAPLL 218

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               L RL S+                DGR R      G   +GRW+        +P+  
Sbjct: 219 AYKELARLHSAHGW-----AWLRTWVHDGRFRPEYVVGGVV-SGRWATRGGGALQIPK-- 270

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR+ + A  G +LVVAD A +E R+LA +AG
Sbjct: 271 ----------------------------AVRAAVRADPGNRLVVADAAQLEPRILAAMAG 302

Query: 395 EDWKIKAFANGE--DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +    +A    +  D+Y     + F         + RA  K+  L+  Y    +      
Sbjct: 303 DAALARAGGRDQDSDLYAGLAHELFGGA----GPDGRAKAKLAVLSAIYG---QTSGDAG 355

Query: 453 SHCGLDLQQF 462
           +H  L  ++F
Sbjct: 356 AHLALLRRRF 365


>gi|47934826|gb|AAT39851.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 77/237 (32%), Gaps = 51/237 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + ++  E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQTTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           ++ P G      RS      G KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNGILSGEHPH 208


>gi|291335762|gb|ADD95365.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 237

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 41/155 (26%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +N  ++ V+ +GR+        ++ T R +        +P                    
Sbjct: 55  VNAWNKLVTGEGRIHHHCS--VSTNTFRCAHRKPNLAQVP-------------------- 92

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIY 409
                   AS+  R    AS G  +V ADL+GIE R+LA   G  +  +       +DI+
Sbjct: 93  --------ASEEFRELFTASPGMVMVGADLSGIELRMLAHYLGRYDGGRYADILLNDDIH 144

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
                K             R   K +  A  Y  G
Sbjct: 145 QVNADKI-GIT--------RRQVKTVTYAFLYGAG 170


>gi|262342093|gb|ACY54557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 29/176 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G+ +V ADL+GIE R+LA      ++ +  +     DI+     K       
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R   K +  A  Y  G                         Q +   V      
Sbjct: 70  ------RRQVKTVTYAFLYGAGDSKLGRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 473 EDWEQAESHHLWM--------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               ++++   ++               A+   L G+A  + K+     +    +L
Sbjct: 124 VTAVKSKAESGYINLCDSRRCTVDGSHKALNYLLQGSAGVIAKRWMLINYTNTKEL 179


>gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B]
          Length = 179

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 34/197 (17%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
           D+  +      L   L DE  + V  N  ++R +     GI++    +  T + +     
Sbjct: 1   DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNS 58

Query: 105 LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFG 160
           +        LA  + +H T   E   GK      F + ++                +  G
Sbjct: 59  VAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAG 102

Query: 161 EYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T +L  ++ P             + E  L  +   I   G +ID  ++   
Sbjct: 103 RYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNH 162

Query: 210 QELIAQERKKLDEDIVK 226
            E +     +L++   +
Sbjct: 163 SEELTLRLAELEKKAHE 179


>gi|47934814|gb|AAT39845.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 166

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 35/195 (17%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L  + G+     +E       + +L   +I +   
Sbjct: 2   EKTGKRLKDKVTEFNVGSRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKT 60

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 61  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 111

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           +++ P G      RS      G KL+  D +G+E R+LA    +
Sbjct: 112 ----------------SVSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRD 152

Query: 396 DWKIKAFANGEDIYV 410
           +       +G DI+ 
Sbjct: 153 ERYTNEILSG-DIHT 166


>gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 239

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 56/183 (30%), Gaps = 30/183 (16%)

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            +  +K  + +         +SRQ  A R+        D     +  +       N    
Sbjct: 82  ERWSEKTGKRLKDKVTVFNVASRQQVAERLAQKGAVWCDTTPSGKPKVDEATLKQNEKIA 141

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              L+L  L       + L    +AV  DGR+ G +   GA  TGR +        +P  
Sbjct: 142 EAALVLEYLTLQKRYGM-LKNWLDAVQDDGRIHGRVNTCGAV-TGRMTHSSPNMAQIPSD 199

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                          R C +   G KLV  D +G+E R+LA   
Sbjct: 200 SL----------------------------YRQCFVVPEGSKLVGIDASGLELRMLAHYM 231

Query: 394 GED 396
            + 
Sbjct: 232 DDP 234


>gi|262212411|gb|ACY35822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 28/171 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A+ G+ +VVADL+GIE R+LA  +A  D          DI+     K        
Sbjct: 13  RRLFMATPGQVMVVADLSGIELRMLAHYLARYDTYFGDNLLNGDIHQINADKI-GIS--- 68

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK---------TMASHCGLDLQQFS-QNVKSTSTFE 473
                R + K +  A  Y  G +              A   G ++++   + +   S   
Sbjct: 69  -----RKLVKTVCYAFLYGAGLEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSELL 123

Query: 474 DWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQG 516
              ++ ++  +++           P  A+   L G+A  + K+     H  
Sbjct: 124 GAVKSAANRGFVKGIDGRKILVDSPHKALNYLLQGSAGVIAKRWMVIAHDN 174


>gi|262212373|gb|ACY35803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 29/176 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G+ +V ADL+GIE R+LA      ++ +  +     DI+     K       
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R   K +  A  Y  G                         Q +   V      
Sbjct: 70  ------RRQVKTVIYAFLYGAGDSKPGRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 473 EDWEQAESHHLWM--------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               ++++   ++               A+   L G+A  + K+     +    +L
Sbjct: 124 VTAVKSKAESGYINLCDSRRCTVDGSHKALNYLLQGSAGVIAKRWMLINYTNTKEL 179


>gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
 gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
          Length = 66

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411
           + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y  
Sbjct: 1   MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTDPDLYKL 60

Query: 412 T 412
            
Sbjct: 61  A 61


>gi|262212355|gb|ACY35794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 29/176 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G+ +V ADL+GIE R+LA      ++ +  +     DI+     K       
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R   K +  A  Y  G                         Q +   V      
Sbjct: 70  ------RRQVKTVIYAFLYGAGDSKLGRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 473 EDWEQAESHHLWM--------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               ++++   ++               A+   L G+A  + K+     +    +L
Sbjct: 124 VTAVKSKAESGYINLCDSRRCTVDGSHKALNYLLQGSAGVIAKRWMLINYTNTKEL 179


>gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
 gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
          Length = 634

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 132/451 (29%), Gaps = 85/451 (18%)

Query: 69  VAHNSLFER--ILFKKTLGIDIPSKRWICTSVLART--------NGLPSSLKNACLALNF 118
           V HN  ++   ++    + +D   K W  T VLAR          GL  SL      L  
Sbjct: 121 VFHNGAYDVPPLVQHGVMTLDHIVKVW-DTIVLARMAYPDKDTSKGLE-SLAGRSDTLGM 178

Query: 119 SEHLTKMEEGKALIAR-----FCKGSIDSPPYDCTRANHVQ--------------AWQLF 159
                 ++    L        F    ID  PY     +                  W   
Sbjct: 179 PPSPGSIKNSYLLAGYKKSDGFMHADIDMLPYRIGAMSDTPITLRMLDKLYNNCVQWLTS 238

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             +    V  T +   RLI          L    I   G R+D + +    E    ER+ 
Sbjct: 239 STFEGETVPRTAQDAHRLIEREQITNRAMLRRSAI---GLRVDREYLHTYSEQTLAEREH 295

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
               I K       +      +  YL    G+            + +     +     ++
Sbjct: 296 AANLIEKTIAR--EAVGNGLHVVNYL-DTQGLIPASWPRTPTGRLKADKQAFESLDHPLI 352

Query: 280 --NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
             +R  +    IL     ++A++   GR+   +   GAS TGR +    + Q  P + R 
Sbjct: 353 DAHRKVADTDHILDYLGKTDAMAQITGRVHPQVGILGASATGRMAYSQPELQQFPSEARK 412

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
             +  +                              G   V  D + +E  ++A  A + 
Sbjct: 413 IILWDK----------------------------PEGA--VSIDWSSVEPVIMANCARDT 442

Query: 397 WKIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451
             +  F  +G D+Y    ++            +R   KV+ LA  Y  G    A+     
Sbjct: 443 EFLAGFNHHGADLYAPITSQ--GI--------ERKTAKVVMLAAMYGQGSRSLAERLGVS 492

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                   ++  + +  T  F    QA S  
Sbjct: 493 VDEAKSLRKKVFEPMPRTDAFMKAIQATSEQ 523


>gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 93/285 (32%), Gaps = 48/285 (16%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG  ID   +  +++     ++ L E   +   G+         L  +      I  
Sbjct: 28  MEHRGVPIDTTTLGLMRDNWHDFKQALIEKTDQ-AYGVYDKGSFRVHLFEHYLGAENIAW 86

Query: 254 VDMSEGTLKSILSHSNI-----TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
             ++ G L+       +      QLA+   L +  +    I         V  DGR R  
Sbjct: 87  PRLASGELQLDRDTFKMMALRHPQLAELRELRKTLAEMREIK------LTVGRDGRNRTL 140

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
           L  +  S+TGR         N P   +                     +       RS I
Sbjct: 141 LSPFN-SKTGR---------NQPSTTK--------------------FIFGLPAWARSLI 170

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE- 427
               G  L   D +  E  + A ++G+D   +A+A+G D Y+     A        +KE 
Sbjct: 171 KPEPGTALAYLDFSSQEIAIAACLSGDDALWQAYASG-DPYIQFAIDA-GLAPVGATKES 228

Query: 428 ---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              +R   KV+ L + Y   A      AS   L+ +   Q  K  
Sbjct: 229 HKAERDACKVIMLGVQYGMSAYGMGQKASLHVLEAEDLLQRHKDV 273


>gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1]
 gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1]
          Length = 723

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 80/270 (29%), Gaps = 37/270 (13%)

Query: 234 SSRQTYALRMYLFLITGIDLV--DMSEGTLK-SILSHSNIT--------QLAKDLILNRL 282
           +      L   L       +   D  +  +    L H  +         +L ++ ++ + 
Sbjct: 340 NPGSGDHLAKVLMERGWEPVDFTDTGKPVVDDETLEHVKLPDAEAQDCVELVREYLVVQK 399

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
               +A  K N   + V  DGR+ G++   GA  TGR +        +P          +
Sbjct: 400 RIGQAAEGK-NAWLKLVGPDGRMHGSINPCGAV-TGRATHSSPNMAQVPANGAPYGETCR 457

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIK 400
              A        D                +    V  D +G+E R L   A   +  +  
Sbjct: 458 G--AFGAAWNKKDGK-------------PDPWIQVGVDASGLELRCLGNRAAPFDGGEYA 502

Query: 401 AFANGEDIY---VTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFK-TMAS 453
                 DI+         A N   DK + E    R   K    A  Y  GA      +  
Sbjct: 503 KTVVEGDIHWANAVNAGLAPNVKRDKSNHEHEAFRNNAKTFIYAFLYGAGAAKIGLIVGG 562

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
                     + ++ T   +D  +A S+ L
Sbjct: 563 GKKEGAALMKKFIEGTPAIKDLREAVSNTL 592


>gi|308276816|gb|ADO26715.1| Hypothetical protein CpI19_1452 [Corynebacterium
          pseudotuberculosis I19]
          Length = 121

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 16 LPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
          L K G++ YA+     + L  Y  D  PV++ D      +PS++L  L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|300858866|ref|YP_003783849.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300686320|gb|ADK29242.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206573|gb|ADL10915.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis C231]
 gi|302331128|gb|ADL21322.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis 1002]
          Length = 117

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 16 LPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
          L K G++ YA+     + L  Y  D  PV++ D      +PS++L  L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|229472211|gb|ACQ72620.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +  +     DI+     K       
Sbjct: 13  RKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCDGRRCSV 146


>gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII-------------------RSS 235
              G++++    L+L  ++  +   +  ++  +   II                    + 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK---- 291
                +   L            +G++  I+    +  L  D    +  +    + K    
Sbjct: 61  GSRQQIAERLIEKGWKPTKRTEKGSV--IVDEEVLASL--DYPEAKALAEYMMLQKRIAQ 116

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++  EAV  DGR+ G +   GA  TGR +        +P                    
Sbjct: 117 IDSWLEAVGKDGRVHGRVITNGAV-TGRMTHMSPNMAQVPNSGSP--------------- 160

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                        R       G KLV  D AG+E R+LA    + 
Sbjct: 161 --------YGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 197


>gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 228

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 40/234 (17%)

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +    + ++  PL    +++           Y+ + +L     + + ++  ++     ++
Sbjct: 28  DLEETVHEKFKPLPTFVKEIVPK--------YKKNGELSSVGLKFLGEDWTQVGGTFSRI 79

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            D    +      +  YL L  G      +E T ++++    + +   D+   +L +   
Sbjct: 80  -DWPEFNLGSRQQIGRYLRLF-GWKPEKFTE-TGQAVVDEKTL-ETVTDIPEAQLIAEYL 135

Query: 288 AILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            + K    + +  +AV  DGR+ G +   GA  TGR +         P            
Sbjct: 136 MVGKRIAQVQSSLDAVEDDGRVHGQVNAIGAV-TGRMTHSSPNMAQTP------------ 182

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                    +  P G      R+C I  +G KLV  D +G+E R+LA    +  
Sbjct: 183 --------AVGVPYGYEC---RACWIVPDGHKLVGVDASGLELRMLASFMNDPT 225


>gi|229472291|gb|ACQ72660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +  +     DI+     K       
Sbjct: 13  RKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCDGRRCTV 146


>gi|229472603|gb|ACQ72816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 13/144 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESH 481
                 R   K +  A  Y  G            L  QQ  +  K     + D       
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSY-DAQLSEQQAKKRGKEIRQAYMDAVPGLEK 122

Query: 482 HLWMQDQYPEFAVKDKLIGTACEL 505
            +       E    +   G  C +
Sbjct: 123 LVTAVKSKAESGYINLCDGRRCSV 146


>gi|229472509|gb|ACQ72769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RRLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|262342107|gb|ACY54564.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 29/176 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS  + +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 14  RKLFKASPNQVMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 70

Query: 423 KVSKEQRAIGKVMELALGYQGG---------AKVFKTMASHCGLDLQQ-FSQNVKSTSTF 472
                 R   K +  A  Y  G         A++ +  A   G +++Q +   V      
Sbjct: 71  ------RRAVKTVTYAFLYGAGDSKLGKSFDAQLTEQQAKKKGKEIRQAYMDAVPGLEKL 124

Query: 473 EDWEQAESHHLWM--------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
            +  ++++   ++               A+   L G+A  L K+     H    +L
Sbjct: 125 VNAVKSKAESGYINLCDGRRCSVDGSHKALNYLLQGSAGVLAKRWMLINHDNTREL 180


>gi|229472431|gb|ACQ72730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +  +     DI+     K       
Sbjct: 13  RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCDGRRCTV 146


>gi|262212349|gb|ACY35791.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDELLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|229472485|gb|ACQ72757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKRKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|229472459|gb|ACQ72744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 13/144 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESH 481
                 R   K +  A  Y  G            L  QQ  +  K     + D       
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSY-DAQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 482 HLWMQDQYPEFAVKDKLIGTACEL 505
            +       E    +   G  C +
Sbjct: 123 LVTAVKSKAESGFINLCDGRRCTV 146


>gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16]
 gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16]
          Length = 808

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 26/169 (15%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS---AILKLNTLSEAVSSD 302
           F  +G  L  + +   ++      + +L KD     +  + +   +I     + + V  D
Sbjct: 399 FSTSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGSIKDTKGMLQYVDED 458

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G +  +L    A+ T R S      Q LP ++  +                      A  
Sbjct: 459 GIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDD--------------------PEAGS 497

Query: 363 CVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
            V+   ++       L   D   +E  +LA ++ +   ++    G D++
Sbjct: 498 RVKEMFVSRFGPDGMLGETDYTALEVVMLAALSKDRNLLEKLMAGTDMH 546


>gi|229472359|gb|ACQ72694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 13/144 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESH 481
                 R   K +  A  Y  G            L  QQ  +  K     + D       
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSY-DAQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 482 HLWMQDQYPEFAVKDKLIGTACEL 505
            +       E    +   G  C +
Sbjct: 123 LVTAVKSKAESGFINLCDGRRCTV 146


>gi|229472263|gb|ACQ72646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKST 469
                    R + K +  A  Y  G +              A   G ++++ +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGEEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +    K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAIPAKRWMVINQQNIKDL 179


>gi|229472421|gb|ACQ72725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIREL 179


>gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 699

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 77/300 (25%), Gaps = 57/300 (19%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLA----WIAGEDWKIKAFANGEDIYVTTYAKAFN- 418
           +R    A  G      D  G+E R +A    W  G      A  +G D++    A+    
Sbjct: 357 IREVHEARPGYVFCSVDYGGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGE 416

Query: 419 ---------TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                       D V+   R + K++               M     +   +    V   
Sbjct: 417 SYAGLLAKVKAKDPVAVAFRQLAKILNF--------GKGGGMTGGSLVYNARAKDRVSFC 468

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +  +      + +  Q     V        C    +  R   +  L  W +      
Sbjct: 469 LLAKRADMCGVERVPVTVQRKPKMV--------CRTCVEVARELDEKWLAAWPE------ 514

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
              Q      A+ +     +          +        + +        +         
Sbjct: 515 ---QRDLQRKAKSLTYGGGVADVMIPGANILRGACGYTQILNTPFQGLGAVGCKLGMWR- 570

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                          +SR++    ++++   G  +VL VHDE++SE        +     
Sbjct: 571 ---------------VSREM--YTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAE 613


>gi|167841478|ref|ZP_02468162.1| 38L [Burkholderia thailandensis MSMB43]
          Length = 787

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 84/271 (30%), Gaps = 58/271 (21%)

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKDLILNRLASSG-----SAILKLNT 294
           + +     G  +   +   ++++ +     +  +A+   L +   +              
Sbjct: 365 KKWESSEPG--VYSTAGDVIEALGNRGIPFLDAMARVQALTKDLGTYFIRYDEKKKAHVG 422

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           +   V  D  +   L  +  + TGR S      QNL + ++S                  
Sbjct: 423 MLTLVQLDSIVHHMLN-HTNTVTGRLSSSNPNLQNLSKGQKSR----------------- 464

Query: 355 DPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV-- 410
                    V+    +  G+   ++ +D + +E  V A +   +  I+   +G+D++   
Sbjct: 465 ---------VKEVFESRWGEDGVIIQSDFSSLEVYVQAILTKAEKLIEDLKSGKDMHCVR 515

Query: 411 ------TTYAKAFNT-----PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                  TY + F         +   K  R   KV      Y  G K           ++
Sbjct: 516 LAAKEGKTYEEVFELCKIIADPEWDYK--RTGAKVFSFQRAYGAGNKTIAESTGMPLEEV 573

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           +  +Q     +  E + +  ++     ++  
Sbjct: 574 EALAQ-----AEDERYHEVPAYFEKKTEEIK 599


>gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
 gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
          Length = 669

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 80/320 (25%), Gaps = 68/320 (21%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLA----WIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
           +R    A  G      D  G+E R +A    W  G     +A  +G D++    A+    
Sbjct: 357 IREVHEARPGFAYCSVDYGGLELRTMAQRAIWELGYSKMAEALNSGLDVHTLAAAEFLGA 416

Query: 420 PIDKVSKEQ----------RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             D++  +           R + K++               M     +   +    V   
Sbjct: 417 SYDELLPKVKAKDPLAVAFRQLAKILNF--------GKGGGMTGGSLVYNARAKDRVSFC 468

Query: 470 STFEDWEQA-ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
              +  +       +    + P+           C    +  +      L  W +  E  
Sbjct: 469 LLAKRADVCGIERIVITVQRKPKM---------VCRACVEVAKELDTKWLNAWPEQRE-- 517

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      A+                  +        + +        +    +   
Sbjct: 518 -------LQQRAKSSTYGGGFADVMIPGANILRGGCGYTQILNTPFQGLGAVGCKLAMWR 570

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                           +SR++     + +   G  +VL VHDE++SE P      +    
Sbjct: 571 ----------------VSREM--YVDRRSPLYGSRLVLMVHDELISELPANSAQRMHDAA 612

Query: 649 S----LM-----TKNPSWAK 659
                LM        P  A 
Sbjct: 613 ERKAYLMREAMKETTPDLAP 632


>gi|229472301|gb|ACQ72665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRTLFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|310818189|ref|YP_003950547.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309391261|gb|ADO68720.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 630

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 77/300 (25%), Gaps = 57/300 (19%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLA----WIAGEDWKIKAFANGEDIYVTTYAKAFN- 418
           +R    A  G      D  G+E R +A    W  G      A  +G D++    A+    
Sbjct: 288 IREVHEARPGYVFCSVDYGGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGE 347

Query: 419 ---------TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                       D V+   R + K++               M     +   +    V   
Sbjct: 348 SYAGLLAKVKAKDPVAVAFRQLAKILNF--------GKGGGMTGGSLVYNARAKDRVSFC 399

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +  +      + +  Q     V        C    +  R   +  L  W +      
Sbjct: 400 LLAKRADMCGVERVPVTVQRKPKMV--------CRTCVEVARELDEKWLAAWPE------ 445

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
              Q      A+ +     +          +        + +        +         
Sbjct: 446 ---QRDLQRKAKSLTYGGGVADVMIPGANILRGACGYTQILNTPFQGLGAVGCKLGMWR- 501

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                          +SR++    ++++   G  +VL VHDE++SE        +     
Sbjct: 502 ---------------VSREM--YTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAE 544


>gi|229472607|gb|ACQ72818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCDGRRCSV 146


>gi|262212409|gb|ACY35821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQTKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCGGRRCSV 146


>gi|229472209|gb|ACQ72619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472325|gb|ACQ72677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472333|gb|ACQ72681.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472437|gb|ACQ72733.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCDGRRCSV 146


>gi|262212061|gb|ACY35647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212137|gb|ACY35685.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212159|gb|ACY35696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIEAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|229472289|gb|ACQ72659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCDGRRCTV 146


>gi|229472477|gb|ACQ72753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 29/176 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+++V ADL+G+E R LA      ++ + +     +DI+     K       
Sbjct: 13  RKLFRASPGQRMVGADLSGVELRCLAHYLARYDEGRYREVLLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDKSLSPNKAKAKGKEIRQAYIDAIDGLDKL 123

Query: 473 EDWEQAESHHLWMQDQYPE--------FAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               +  S   +++              A+   L  TA  L K+      Q + + 
Sbjct: 124 LKDIKQASERGYVRAIDKRKVLVDSSHKALNYLLQSTAAVLAKRWMVINDQTIKET 179


>gi|262342247|gb|ACY54634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|229472415|gb|ACQ72722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVGSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|47934818|gb|AAT39847.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHGPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++ P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|229472219|gb|ACQ72624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + Q   +  +    + D        
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGFINLCDGRRCTV 146


>gi|229472169|gb|ACQ72599.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472187|gb|ACQ72608.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472201|gb|ACQ72615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472299|gb|ACQ72664.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472313|gb|ACQ72671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472317|gb|ACQ72673.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472413|gb|ACQ72721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|229472443|gb|ACQ72736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|229472411|gb|ACQ72720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472513|gb|ACQ72771.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472523|gb|ACQ72776.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|229472191|gb|ACQ72610.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472285|gb|ACQ72657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472519|gb|ACQ72774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472529|gb|ACQ72779.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472531|gb|ACQ72780.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472549|gb|ACQ72789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472609|gb|ACQ72819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|262212089|gb|ACY35661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212167|gb|ACY35700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|262342303|gb|ACY54662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDVIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|229472193|gb|ACQ72611.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472303|gb|ACQ72666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|213025636|ref|ZP_03340083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 99

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 162 YCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           Y   D + T +L  ++ P             + E  L  +   +   G +ID  ++ K  
Sbjct: 1   YAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHS 60

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           E I     +L++    +       S  T  L+  LF   
Sbjct: 61  EEITLRLAELEKKAHDIAGEAFNLS-STKQLQTILFEKQ 98


>gi|229472593|gb|ACQ72811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 11  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 67

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 68  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 120

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 121 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHNAI 174


>gi|229472457|gb|ACQ72743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHSVI 176


>gi|229472429|gb|ACQ72729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGCSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVGSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|229472173|gb|ACQ72601.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472401|gb|ACQ72715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHNVI 176


>gi|229472483|gb|ACQ72756.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|47934782|gb|AAT39829.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934784|gb|AAT39830.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934796|gb|AAT39836.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934804|gb|AAT39840.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934820|gb|AAT39848.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++ P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|229472533|gb|ACQ72781.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++E+   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSEAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472517|gb|ACQ72773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 7   PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 65

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 66  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 117

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 118 DKLLAAIKTASERGFIKAIDGRRIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 176


>gi|47934626|gb|AAT39751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 200

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++ P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|229472189|gb|ACQ72609.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472331|gb|ACQ72680.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472419|gb|ACQ72724.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472601|gb|ACQ72815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHNVI 176


>gi|229604938|ref|YP_002875638.1| putative DNA polymerase [Vibrio phage VP93]
 gi|227976983|gb|ACP44085.1| putative DNA polymerase [Vibrio phage VP93]
          Length = 811

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 48/229 (20%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA---ILKLNTLSEAV--- 299
           F  +G  +  +++         S +  L KD     L         I K + + + V   
Sbjct: 401 FSSSGDCMAGLAKQGFTFASDISRLATLEKDTGTYYLRHEYDDEGNITKSSGMLQYVIPE 460

Query: 300 --SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
                G +   L    A+ TGR S      QNLPR E                    D  
Sbjct: 461 KPDGSGIIHHRLNTC-ATVTGRLSASNPNLQNLPRAE-------------------EDKD 500

Query: 358 GLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
           G A   V+    +  G+  +++  D + +E  +     G+   ++    G D++   Y  
Sbjct: 501 GNAKSRVKEMFTSRFGEDGRIIEVDYSALEVVMGVVHTGDMKLLELLKAGTDMHC--YRL 558

Query: 416 AF--NTPIDKVS--------------KEQRAIGKVMELALGYQGGAKVF 448
           AF  N   ++V               K  R   K    A  Y   A   
Sbjct: 559 AFQENLDYEEVYRRCHDEGFEFHALWKSMRTAIKAPSFAAQYGASAAGI 607


>gi|229472409|gb|ACQ72719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVIDQQNIKEL 179


>gi|229472405|gb|ACQ72717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|47934792|gb|AAT39834.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934822|gb|AAT39849.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++ P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|262342109|gb|ACY54565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 43/144 (29%), Gaps = 13/144 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS  + +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RKLFKASPNQVMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESH 481
                 R   K +  A  Y  G            L  QQ  +  K     + D       
Sbjct: 70  ------RRAVKTVTYAFLYGAGDSKLGKS-FDAQLTEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 482 HLWMQDQYPEFAVKDKLIGTACEL 505
            +       E    +   G  C +
Sbjct: 123 LVNAVKSKAESGFINLCDGRRCSV 146


>gi|229472241|gb|ACQ72635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHNVI 176


>gi|262342309|gb|ACY54665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 30/180 (16%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FANGEDIYVTTYAKAFN 418
               R   I + G+ +V ADLAGIE R+L+  +A  D    A      DI+     K   
Sbjct: 9   GHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARCDNGRYADILLNGDIHQVNADKI-G 67

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKS 468
                     R + K +  A  Y  G +                       Q + + +  
Sbjct: 68  IS--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 469 TSTFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQNNLKL 178


>gi|47934790|gb|AAT39833.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           +  P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VPAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|229472253|gb|ACQ72641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472171|gb|ACQ72600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDEL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|229472267|gb|ACQ72648.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKPLAAIKKASERGFIEAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|262342143|gb|ACY54582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
             +R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRLRALFLPSPGQAMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|47934824|gb|AAT39850.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++ P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|229472461|gb|ACQ72745.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 30/172 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+ +V ADL+GIE R+LA      ++ +        DI+     K       
Sbjct: 13  RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG---------AKVFKTMASHCGLDLQQ-FSQNVKSTSTF 472
                 R   K +  A  Y  G         A++ ++ A   G +++Q +   V      
Sbjct: 70  ------RRAVKTVTYAFLYGAGDAKLGKSFDAQLTESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 473 EDWEQAESHHLWM--------QDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
               ++++   ++               A+   L G+A  L K+ W   +  
Sbjct: 124 VTAVKSKAESGYINLCDGRRCAVDGAHKALNYLLQGSAGVLAKR-WLLINHN 174


>gi|224092356|ref|XP_002309573.1| predicted protein [Populus trichocarpa]
 gi|222855549|gb|EEE93096.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           +GRL  +   + +S     S  +               +   +QA       A       
Sbjct: 202 NGRLLTSNVSFCSSLNPGLSYRLVNVLANMELWGMGVDMEGCLQAHTVLRKKAKGSREEG 261

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTP 420
             +    I ++   L+ AD + IE R++   + +   I+  A    D+++   A+    P
Sbjct: 262 LRLSWHDIFTDNWLLLTADYSQIELRLMEHFSKDSTLIELPAKPHGDVFIMIAARWTGKP 321

Query: 421 IDKVSKEQRAIGK--VMEL 437
            D V+  +R   K   ME 
Sbjct: 322 EDSVNSVERDQTKRLAMEF 340


>gi|229472343|gb|ACQ72686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472583|gb|ACQ72806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|47934812|gb|AAT39844.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 199

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 49/224 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR---SSRQTYALRMYLFLIT-- 249
              G+ +D++    L + I  + +++ E + K+   I+    S +    L+  +      
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 250 ------------GIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKLN 293
                       G+     +E       + +L   +I +         L    + I    
Sbjct: 61  SRKXIAERLVGVGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSWL 120

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           T  +    DGR+ G +   GA  TGR +        +P                    ++
Sbjct: 121 THEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------SV 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           + P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 156 SAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11]
 gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11]
          Length = 709

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 90/332 (27%), Gaps = 75/332 (22%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK---SILSHSNITQLAKDLILNRLASS 285
           + ++ +      + + L     +      +G  K    +L H  +    K   ++ L   
Sbjct: 335 EHVVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLEHVRVGDPEKQRCID-LIKE 393

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K               V  DG++ G++   GA  TGR +        +P      
Sbjct: 394 YLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGAV-TGRATHSFPNLGQVPG----- 447

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG--------KKLVVADLAGIEARVL 389
                          +  P G      R+   A +               D +G+E R L
Sbjct: 448 ---------------VRSPYGEPC---RAAFGAEHHLDGLTGQPWVQAGIDASGLELRCL 489

Query: 390 AWIA---GEDWKIKAFANGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           A       +        NG DI+    T A+             R   K       Y  G
Sbjct: 490 AHFMSKYDDGAYADVILNG-DIHTVNQTAAEL----------PTRDNAKTFIYGFLYGAG 538

Query: 445 ---AKVFKTMASHCGLDL-QQFSQNVKSTSTFED-----------WEQAESHHLWMQDQY 489
                         G +L ++F +N  + +   +           W   E    W +   
Sbjct: 539 DEKIGQIVGAGKERGKELKKKFLENTPAIAALREGIQQTLVESSRWVAGEQKVKWKRRWI 598

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                +   + +    +    ++    + +LW
Sbjct: 599 KGLDGRKVHVRSPHAALNTLLQSAGALICKLW 630


>gi|320541061|ref|ZP_08040484.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
 gi|320028876|gb|EFW11132.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
          Length = 54

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL 44
            L++D+ET S  P+ K     YAE   + L ++A D +PV++
Sbjct: 3  KILWLDLETYSEIPI-KNATHTYAENVDVILFSWAIDKDPVQV 44


>gi|262342145|gb|ACY54583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 30/193 (15%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R     S G+ +V ADLAGIE R+L+      +  +        DI+     K    
Sbjct: 10  SRFRELFQPSPGQLMVGADLAGIELRMLSHFLARYDQGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RRLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               D  +  S   +++           P  A+   L G +  ++ K W   +Q  ++  
Sbjct: 121 DKLLDAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQHNVKQL 179

Query: 522 KDLTEGFACVVQE 534
                  A +  E
Sbjct: 180 DLCCSQLAFIHDE 192


>gi|262212351|gb|ACY35792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 35/235 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57
             L +D ET   +P+           A +   +++  +     V +  DR E   +  + 
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
                +E  + V  N  ++ I+ +    +    K  +  +++A     P      +    
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAV---VKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 116 LNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVE 168
           +        ++E     GK           D   Y C  A+     +  L  E  + D E
Sbjct: 484 IYLHYQTIHIDELIGPKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAE 543

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                  RL    D E  L  +   I   G  +D + + +       + ++++++
Sbjct: 544 -------RLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKE 589


>gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 152

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGL 457
           F  G DI++ T    F      ++KE+R+I K +   L Y  G+K          +    
Sbjct: 1   FLKGRDIHLETSKALFG---GDLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKS 57

Query: 458 DLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWMQDQYPEFAVKDK 497
            ++ + +   S   + +  + E                      + +++  Y    V   
Sbjct: 58  YIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREGVNAI 117

Query: 498 LIGTACELVKKAWRAKHQG 516
             G+A +L+K       + 
Sbjct: 118 FQGSASDLLKLGMLKVSER 136


>gi|229472319|gb|ACQ72674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 29/176 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G+ +V ADL+GIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFQATPGQVMVGADLSGIELRMLAHYLARYDAGRYAEVLLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R   K +  A  Y  G                         Q +   V    T 
Sbjct: 70  ------RKQVKTVTYAFLYGAGDAKLGRSYDPQLNEKEAKRKGKEIRQAYMDAVPGLETL 123

Query: 473 EDWEQAESHHLWM--------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               ++++   ++               A+   L G+A  L K+     H    +L
Sbjct: 124 VTAVKSKAESGYINLCDGRRCSVDGSHKALNYLLQGSAGVLAKRWMLINHDNTREL 179


>gi|262342111|gb|ACY54566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   I S G+ +V ADL+GIE R+LA      +  +        DI+     K    
Sbjct: 10  GRFRELFIPSPGQLMVGADLSGIELRMLAHYLARYDGGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
                    R   K +  A  Y  G     T 
Sbjct: 69  S--------RREVKTVTYAFLYGAGDAKIGTS 92


>gi|229472561|gb|ACQ72795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 55/174 (31%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKVATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|229472423|gb|ACQ72726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGVVAKQWMVHTHDVI 176


>gi|229472351|gb|ACQ72690.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472367|gb|ACQ72698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472447|gb|ACQ72738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|229472181|gb|ACQ72605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  F--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 32/167 (19%)

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-- 291
           +      +   L            +G++  I+    +  L  D    +  +    + K  
Sbjct: 60  NPGSRQQIAERLIEKGWKPTKRTEKGSV--IVDEEVLASL--DYPEAKALAEYMMLQKRI 115

Query: 292 --LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +++  EAV  DGR+ G +   GA  TGR +        +P                  
Sbjct: 116 AQIDSWLEAVGKDGRVHGRVITNGAV-TGRMTHMSPNMAQVPNSGSP------------- 161

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                          R       G KLV  D AG+E R+LA    + 
Sbjct: 162 ----------YGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 198


>gi|229472395|gb|ACQ72712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRELFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                         +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRAAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q + +L
Sbjct: 121 DKLLASIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKEL 179


>gi|229472215|gb|ACQ72622.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM]
          Length = 404

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/436 (12%), Positives = 113/436 (25%), Gaps = 104/436 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           + ++  +    D+  + +  +        L               H ++   GK+L   +
Sbjct: 1   DTLVLSRLFFTDLLDRDFR-SRPANMPANLYGRHSLEAWGHRLGVHKSEF--GKSLDGDW 57

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-------IPLSDGERDLW 188
              + +   Y                 C++DV  + ++ +             D E  + 
Sbjct: 58  STYTPEMGAY-----------------CQQDVVVSVKVAQLFESKLETHSDCIDTEHRIA 100

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI------------------------ 224
            +       G+  D+D   +L+  +  E   + E++                        
Sbjct: 101 DVMAWQERVGFPFDVDKAQQLESKLRTELDAISEEMRSTFAFVDGGCFTPKRSNGPRGYV 160

Query: 225 --VKLTDGIIRSSRQTYALRMYLFL-----ITGIDLVDMSEGTLKSILSHSNITQLAK-- 275
               +      S      +  + F                     S+L      +  K  
Sbjct: 161 EGAAMCKLKEFSPTSRDHI-AWAFETFRNWEPKERTASGRAKIDDSVLKEIGSPEALKFA 219

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            ++  +      +  K   L + V+  G++  +      + TGR +         P    
Sbjct: 220 RILELQKHLGQLSEGKNAWLQQEVN--GKIHHSCILN--TNTGRMAHLRPNLAQAP---- 271

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG- 394
                                   ++   R+       +  V AD +G+E R LA     
Sbjct: 272 ------------------------SAPEYRALFHPGTNRLQVGADASGLELRCLAHYLAP 307

Query: 395 -EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +  K        DI+    A  + T         R  GK +   L Y GG       A 
Sbjct: 308 FDGGKFAESVVHGDIHTDLAA-IYGTD--------RKSGKGVTYCLIYGGGDTKLGLTAG 358

Query: 454 HCGLDLQQFSQNVKST 469
                  +  + ++  
Sbjct: 359 ASKAQAAKKGKEIRGR 374


>gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122]
 gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122]
          Length = 704

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 82/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      + +             I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDE-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHSALNTLLQSAGALICKLW 625


>gi|229472349|gb|ACQ72689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +         
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDATPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKRWMVHTHNVI 176


>gi|262342131|gb|ACY54576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 30/175 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R     + G+ +V ADL+GIE R+LA      +           DI+     K       
Sbjct: 13  RKLFQPTPGQIMVGADLSGIELRMLAHYLARFDRGVYADILLHGDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFK---------TMASHCGLDLQQFS-QNVKSTSTF 472
                 R   K +  A  Y  G              T A   G +++    + +   +  
Sbjct: 70  ------RRAVKTVTYAFLYGAGDAKIGLSYDSSLSPTRAKSKGKEIRTAFVEAIDGLAQL 123

Query: 473 EDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  +  S   +++           P  A+   L  +   ++ K W   +    Q
Sbjct: 124 LEAIKTASEKGYVRSIDTRKIKVDSPHKALNYLLQ-SGAGIIAKRWMVINHANTQ 177


>gi|229472373|gb|ACQ72701.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAQSGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|229472511|gb|ACQ72770.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472585|gb|ACQ72807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|159038749|ref|YP_001538002.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917584|gb|ABV99011.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
          Length = 566

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 70/225 (31%), Gaps = 46/225 (20%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F   G+++ + +   +   + H  +  + +   L R+ ++           +A   DGR 
Sbjct: 251 FARVGVEVPN-TRSWVLRGVDHPAVPLVLEYKELYRIWTAHGW-----AWRDAWVRDGRF 304

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R      G   +GRW+        +P+                               +R
Sbjct: 305 RPEYVPGGVV-SGRWATRGGGALQIPK------------------------------VIR 333

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             ++A  G  LVVAD   +E RVLA ++G+     A   G+         AF        
Sbjct: 334 RAVVADPGWTLVVADAGQLEPRVLAAVSGDTRLAAAAGAGDLY-AALARDAFG------- 385

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
              RA  KV  L   Y                +       V+S +
Sbjct: 386 -GDRARAKVALLGAMYGQTGGSAAPALEVLRRNYPAAFAYVESAA 429


>gi|262212397|gb|ACY35815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS+G  +V ADLAGIE R+LA      +  + +      DI+     K       
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYRDVLLNGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G K                +      Q +   +      
Sbjct: 70  ------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAAIAKGKEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 124 VEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472521|gb|ACQ72775.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 30/174 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQ 515
                  +  S   +++           P  A+   L G +  ++ K W   +Q
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSA-ILAKRWTVINQ 173


>gi|262342273|gb|ACY54647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342305|gb|ACY54663.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342315|gb|ACY54668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342327|gb|ACY54674.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342329|gb|ACY54675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 30/178 (16%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+  +A  D    A      DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARCDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
              +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQNNLKL 178


>gi|229472441|gb|ACQ72735.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G  +V ADLAGIE R+LA      ++ +        DI+     K       
Sbjct: 13  RQLFTATPGLVMVGADLAGIELRMLAHYLARYDEGRYADILLNGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG---------AKVFKTMASHCGLDLQQ-FSQNVKSTSTF 472
                 R   K +  A  Y  G          ++ +  A   G +++Q +   V      
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGRSYDPQLAEKEAKRKGKEIRQAYMDAVPGLEKL 123

Query: 473 EDWEQAESHHLWM--------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               ++++   ++               A+   L G+A  + K+     H+ + +
Sbjct: 124 VSAVKSKAECGYINLCDGRRCSVDGSHKALNYLLQGSAGVIAKRWMALTHESIYR 178


>gi|307689099|ref|ZP_07631545.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 68

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 577 CSYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
            +Y    +T +  R  + G K  ENIVQAISRDIL   +   T +   IV  
Sbjct: 19  ITYEGVDSTKKWGRLESCGPKFVENIVQAISRDILINAL--YTCSHCFIVGH 68


>gi|229472569|gb|ACQ72799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAG-EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G+++V ADL+G+E R LA  +AG +  +       +DI+     K       
Sbjct: 13  RRLFRASPGQRMVGADLSGVELRCLAHYLAGYDGGRYGEILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDKSLSPNKAKAKGKEIRQAYIDAIDGLDKL 123

Query: 473 EDWEQAESHHLWMQDQYPE--------FAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               +  S   +++              A+   L  TA  L K+      Q + + 
Sbjct: 124 LKDIKQASERGYVRAIDKRKVLVDSSHKALNYLLQSTAAVLAKRWMVINDQTIKET 179


>gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     I      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSSEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHAALNTLLQSAGALICKLW 625


>gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     I      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHAALNTLLQSAGALICKLW 625


>gi|229472371|gb|ACQ72700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEVRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHNVI 176


>gi|229472339|gb|ACQ72684.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  +         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYEGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHDVI 176


>gi|47934624|gb|AAT39750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPSLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           ++ P G      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|229472357|gb|ACQ72693.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|262342123|gb|ACY54572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 58/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+  +   + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMQLTDESLRQ 179


>gi|262342285|gb|ACY54653.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 30/178 (16%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+  +A  D    A      DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARCDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
              +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDPPHKALNYCLQGNSA-ILAKRWMVINQNNLKL 178


>gi|229472363|gb|ACQ72696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472235|gb|ACQ72632.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472491|gb|ACQ72760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|262212405|gb|ACY35819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQVNADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472527|gb|ACQ72778.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    A+ G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFRATPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHNVI 176


>gi|262212361|gb|ACY35797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472525|gb|ACQ72777.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLRGNSAILAKRWMVINQQNIKDL 179


>gi|262212395|gb|ACY35814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 28/171 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A+ G+ +V ADL+GIE R+L+  +A  D          DI+     K        
Sbjct: 7   RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKI-GI---- 61

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHC---------GLDLQQFS-QNVKSTSTFE 473
                R + K +  A  Y  G +                  G ++++   + +   S   
Sbjct: 62  ----IRKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKVKAKGREIKEAFIEAIPGLSDLL 117

Query: 474 DWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQG 516
              +  ++  +++           P  A+   L G+A  +VK+     +  
Sbjct: 118 SAVKCAANRGFVKGIDGRKILVDSPHKALNYILQGSAGVVVKRWMVIANDN 168


>gi|229472249|gb|ACQ72639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472273|gb|ACQ72651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|297559551|ref|YP_003678525.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843999|gb|ADH66019.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 554

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 79/279 (28%), Gaps = 50/279 (17%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
             L   I +     +        LR   +   G  +   +   +   + H  +  L +  
Sbjct: 212 ADLAARIGEAVGREVNPDSPAQVLRAMAW--IGHPVDS-TRSWVLERIDHPVVPLLLRYK 268

Query: 278 ILNRLASSGSAILKLNTLSEAV-SSDG----RLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            L+RL S+      L+         DG    R        G   +GRW+        +PR
Sbjct: 269 ELSRLHSAN-GWAWLDAWVRRRPGPDGTTLGRFHPDYVVGGVV-SGRWATRGGGALQIPR 326

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R  + A  G  LV AD   +E RVLA +
Sbjct: 327 ------------------------------SLRGAVRADPGWVLVRADAGQLEPRVLAAV 356

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+D    A A  + +Y                   R   K+  L+  Y   +     + 
Sbjct: 357 SGDDALAAAAAEED-LYARLAVHVGG---------DRDRAKIGMLSAMYGQTSGDAAPLL 406

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
           +       +  + V S +   +        L      PE
Sbjct: 407 ATMRRLYPRALEYVDSAARTGEGGGIVRSWLGRTSPVPE 445



 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 588 MRERTYGGKLTEN-IVQAISRD----ILCEGMKNATK--NGYDIVLTVHDEIVSETPDTP 640
            R R   G+ T N +VQA + +    +L    +       G  IV  VHDE+V   P   
Sbjct: 457 ERRRRAQGRFTRNFVVQATAAEWALVLLASLRQRLPDMPEGAGIVFFVHDEVVLHVPADL 516

Query: 641 YF 642
             
Sbjct: 517 AG 518


>gi|262342279|gb|ACY54650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262342269|gb|ACY54645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342289|gb|ACY54655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342317|gb|ACY54669.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342319|gb|ACY54670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342323|gb|ACY54672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342325|gb|ACY54673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262342271|gb|ACY54646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEVRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472505|gb|ACQ72767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 30/192 (15%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
              +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQHNLKLLN 180

Query: 523 DLTEGFACVVQE 534
                 A V  E
Sbjct: 181 LCCSQLAFVHDE 192


>gi|262212385|gb|ACY35809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRITCDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262342089|gb|ACY54555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R    AS G  +  ADL+G+E R+LA      +  K        DI+     K     
Sbjct: 11  RFRELFTASPGMVMCGADLSGVELRMLAHYLAKHDGGKYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKSTS 470
                   R+  K +  A  Y  G +              A   G +++Q + + ++   
Sbjct: 70  --------RSAVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKAKGKEIKQAYIEAIEGLD 121

Query: 471 TFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                 ++ S   +++           P  A+   L G++  L K+     H+ + QL
Sbjct: 122 KLLADVKSASERGFIRAIDQRKILVDSPHKALNFLLQGSSACLAKRWLTIAHENIKQL 179


>gi|148807585|gb|ABR13593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  E +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGERLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMVYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
 gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
          Length = 704

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHAALNTLLQSAGALICKLW 625


>gi|262342141|gb|ACY54581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 11/141 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R   +A+ G+ +V ADL+GIE R+LA      +  +        DI+     K       
Sbjct: 13  RQLFMATPGQIMVGADLSGIELRMLAHYLSRFDGGRYAEILLHGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             + +   +  +    + D        
Sbjct: 70  ------RRQVKTVTYAFLYGAGDAKLGRSYDPQLTEKEAKKKGKEIRQAYMDAVPGLETL 123

Query: 483 LWMQDQYPEFAVKDKLIGTAC 503
           +       E    +   G  C
Sbjct: 124 VTAVKSKAELGYINLCDGRRC 144


>gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7]
 gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase
 gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7]
 gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7]
 gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7]
          Length = 704

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHAALNTLLQSAGALICKLW 625


>gi|229472377|gb|ACQ72703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI----- 66

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 67  ----GMSRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKDKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|229472231|gb|ACQ72630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWK--IKAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGGYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|229472577|gb|ACQ72803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHDVI 176


>gi|229472391|gb|ACQ72710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K+     H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKQWMVHTHDVI 176


>gi|262212363|gb|ACY35798.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212401|gb|ACY35817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212413|gb|ACY35823.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212415|gb|ACY35824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342105|gb|ACY54563.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342275|gb|ACY54648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342277|gb|ACY54649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342281|gb|ACY54651.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342287|gb|ACY54654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342291|gb|ACY54656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342293|gb|ACY54657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342297|gb|ACY54659.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342301|gb|ACY54661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342307|gb|ACY54664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi]
          Length = 704

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 84/324 (25%), Gaps = 59/324 (18%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           + ++ +      +   L     + +      +      +L H  +        +  L   
Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIE-LIKE 388

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K         N     +  DGR+ G++   GA  TGR +        +P      
Sbjct: 389 YLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVP------ 441

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA---G 394
            I     +           L              +    V  D +G+E R L        
Sbjct: 442 SIRAAYGEPCRAAFGAEHNLKDGK---------PDPWIQVGVDASGLELRCLGHFMYRYD 492

Query: 395 EDWKIKAFANGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448
           E   ++    G DI+      A     P        R   K       Y  GA    ++ 
Sbjct: 493 EGEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFIYGFLYGAGAAKIGQIV 541

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYPEFAVKDK 497
              A      ++ F +   + +   +           W   E    W +        +  
Sbjct: 542 GGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKV 601

Query: 498 LIGTACELVKKAWRAKHQGVLQLW 521
            + +    +    ++    + +LW
Sbjct: 602 HVRSPHAALNTLLQSAGALICKLW 625


>gi|262212403|gb|ACY35818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|148807571|gb|ABR13586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQE-RKKLDEDIV-KLTDGIIRSSRQTYALRMYLF 246
           LL Q I  R  +I   L      ++ +   +K  + +  K+T+  + S +Q       + 
Sbjct: 4   LLWQDITHRMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVG 63

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
           +   +     +    + +L   +I +         L    + I    T  +    DGR+ 
Sbjct: 64  VKFKLQTEKGAIIVNEEVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVH 119

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
           G +   GA  TGR +        +P                                 RS
Sbjct: 120 GRVITNGAV-TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRS 155

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                 G KL+  D +G+E R+LA    ++ 
Sbjct: 156 FWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
          Length = 698

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 324 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 383

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 384 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 440

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 441 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 487

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 488 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEAIGQIVGA 537

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 538 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 597

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 598 RSPHAALNTLLQSAGALICKLW 619


>gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
           Nucleoside Triphosphate, And Its Processivity Factor
           Thioredoxin
 gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND
           DDATP
 gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template
 gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template And An Incoming Nucleotide
 gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Ddctp At The Insertion Site
 gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
           The Templating Strand
 gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Damp At The Elongation Site
 gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Dcmp At The Elongation Site
 gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
           Insertion Site.
 gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
           Acetylaminofluorene-Adducted Dna
 gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Ctp As The Incoming
           Nucleotide.
 gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Atp As The Incoming
           Nucleotide
          Length = 698

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 324 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 383

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 384 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 440

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 441 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 487

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 488 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 537

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 538 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 597

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 598 RSPHAALNTLLQSAGALICKLW 619


>gi|229472341|gb|ACQ72685.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYTMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472337|gb|ACQ72683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   +++              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIRLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|262212387|gb|ACY35810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472453|gb|ACQ72741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 58/174 (33%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K  A+      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDAATKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 180

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 25/165 (15%)

Query: 423 KVSKEQRAIGKVMELALGYQG---GAKVFKTMAS-HCGLDLQQFSQNVKSTSTFED---- 474
           +V+  QR   KV+   + Y     G      M+       +  +    +    F +    
Sbjct: 3   QVTSNQRRNAKVINFGVLYGMSPHGLSAATGMSFIEAKKFIDDYFNLRRPIREFIEETLE 62

Query: 475 -----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                +S +  +++     A    + GT  +L+K+A     + +
Sbjct: 63  KAKNEGYVTTYFGRRRPTPDVKSSNFMVREAAKRAAANMPIQGTEADLMKRAMLRTEEKL 122

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             L + + +    ++ E    +A +V  + R  M     ++ I L
Sbjct: 123 GNLGEQILQIHDSILVECPKKNADKVVEILRFEMESVAPELDIKL 167



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL 647
           +Q    D++   M    +     G  I L +HD I+ E P      V  +
Sbjct: 103 IQGTEADLMKRAMLRTEEKLGNLGEQI-LQIHDSILVECPKKNADKVVEI 151


>gi|125999975|ref|YP_001039646.1| DNA polymerase A domain-like protein [Erwinia amylovora phage
           Era103]
 gi|121621831|gb|ABM63405.1| DNA polymerase A domain-like protein [Enterobacteria phage Era103]
          Length = 833

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 59/177 (33%), Gaps = 14/177 (7%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS GKK++  D AG+E RVLA    +    +   +G DI+            +K
Sbjct: 550 LRDLFIASKGKKVLGCDGAGLELRVLAHFMNDPEYSEVVLHG-DIHT--------HNQEK 600

Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                R + K    A  Y  G    A V             +F   +   +      QA 
Sbjct: 601 AGLPLRDMAKTFIYAFLYGSGDDNLAAVCGVSVKEMKAIRARFMAELPQLARLMAAVQAS 660

Query: 480 S-HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
              + ++Q     +    K  G   E        +  G L +   L      + QEG
Sbjct: 661 GNEYGYLQAPDGHWGRIRKKDGKLLEHTMLNVLLQMTGSLCMKYALVRAVMVMKQEG 717


>gi|262342125|gb|ACY54573.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 30/193 (15%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R     S G+ +V ADLAGIE R+L+      +  +        DI+     K    
Sbjct: 10  SRFRELFQPSPGQLMVGADLAGIELRMLSHFLARYDQGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               D  +  S   +++           P  A+   L G +  ++ K W   +Q  ++  
Sbjct: 121 DKLLDAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQHNVKQL 179

Query: 522 KDLTEGFACVVQE 534
                  A V  E
Sbjct: 180 DLCCSQLAFVHDE 192


>gi|148807583|gb|ABR13592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  ATIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|262212371|gb|ACY35802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+            
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENA-------- 63

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
              +   R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 64  -DKTGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472495|gb|ACQ72762.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 55/174 (31%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K    A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTATYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei]
 gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei]
 gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei]
 gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei]
 gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei]
 gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei]
 gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei]
 gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei]
 gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei]
 gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei]
 gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E  ++    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I         +      L   LF    + ++  
Sbjct: 144 QGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGLKF-NLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|262212399|gb|ACY35816.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342299|gb|ACY54660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVVAKRWMLLTDESLRQ 179


>gi|262212357|gb|ACY35795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVVAKRWMLLTDESLRQ 179


>gi|148807554|gb|ABR13579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKGKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAEMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|229472227|gb|ACQ72628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  +         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYEGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a]
 gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a]
          Length = 704

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 84/322 (26%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGG-------AKV 447
              A      DI+            ++++ E   R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTK----------NQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHAALNTLLQSAGALICKLW 625


>gi|262342311|gb|ACY54666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS+G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLSGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G K            K   +      Q +   +      
Sbjct: 70  ------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 124 VEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 39/185 (21%)

Query: 216 ERKKLDEDIVKLTDGI-IRSSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNI 270
           E +  ++   +L D + I +      +   L    G+     +E       + +L   ++
Sbjct: 32  EERTSEKTGKRLKDKVTIFNPGSRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDL 90

Query: 271 TQ---LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
            +   +A+ ++L +       + ++++  +AV  DGR+ G +   GA  TGR +      
Sbjct: 91  PEAKAVARYMMLQKR------VAQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM 143

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
             +P                     ++ P G      RSC     G  LV  D +G+E R
Sbjct: 144 AQVP--------------------AVSAPFGTEC---RSCWTVDEGNSLVGIDASGLELR 180

Query: 388 VLAWI 392
           +LA  
Sbjct: 181 MLAHY 185


>gi|262212359|gb|ACY35796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262212367|gb|ACY35800.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212379|gb|ACY35806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K    A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTATYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472271|gb|ACQ72650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|262342133|gb|ACY54577.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 30/193 (15%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R     S G+ +V ADLAGIE R+L+      +  +        DI+     K    
Sbjct: 10  SRFRELFQPSPGQLMVGADLAGIELRMLSHFLARYDQGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               D  +  S   +++           P  A+   L G +  ++ K W   +Q  ++  
Sbjct: 121 DKLLDAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQHNVKQL 179

Query: 522 KDLTEGFACVVQE 534
                  A +  E
Sbjct: 180 DLCCSQLAFIHDE 192


>gi|148807489|gb|ABR13549.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDPWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3]
 gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase
 gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3]
 gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3]
          Length = 704

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 53/376 (14%), Positives = 100/376 (26%), Gaps = 72/376 (19%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGG-------AKV 447
              A      DI+            ++++ E   R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTK----------NQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------------QDQ 488
            K           + +  + +          ES                           
Sbjct: 544 GKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHV 603

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISARRV 543
               A  + L+ +A  L+ K W  K + +     L+   D    +   + +   + A R 
Sbjct: 604 RSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWIHDEIQV-ACRT 662

Query: 544 ANVPRLVMRRHKRDVH 559
             + + V+   +  + 
Sbjct: 663 EEIAKTVIEVAQEAMR 678


>gi|229472589|gb|ACQ72809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|229472403|gb|ACQ72716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472503|gb|ACQ72766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S G+ +V ADL+GIE R+L+      +  +        DI+     K    
Sbjct: 10  PRFRELFLPSPGQVMVAADLSGIELRMLSHFLARYDGGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                         +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSPKAKKKGKEIRAAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLASIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|148807532|gb|ABR13569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   ++ +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDVPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77]
 gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77]
          Length = 808

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 26/169 (15%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA---ILKLNTLSEAVSSD 302
           F  +G  L  + +   ++      + +L KD     +  + +    I     + + V  D
Sbjct: 399 FSTSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDD 458

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G +  +L    A+ T R S      Q LP ++  +                      A  
Sbjct: 459 GIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDD--------------------PEAGS 497

Query: 363 CVRSCIIASNGKKLVVA--DLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
            V+   ++  G   ++   D   +E  +LA ++ +   +     G D++
Sbjct: 498 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH 546


>gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19]
 gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19]
          Length = 807

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 26/169 (15%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA---ILKLNTLSEAVSSD 302
           F  +G  L  + +   ++      + +L KD     +  + +    I     + + V  D
Sbjct: 398 FSTSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDD 457

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G +  +L    A+ T R S      Q LP ++  +                      A  
Sbjct: 458 GIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDD--------------------PEAGS 496

Query: 363 CVRSCIIASNGKKLVVA--DLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
            V+   ++  G   ++   D   +E  +LA ++ +   +     G D++
Sbjct: 497 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH 545


>gi|262342283|gb|ACY54652.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQVYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262212391|gb|ACY35812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L   A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSLAGVIAKRWMLLTDESLRQ 179


>gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei]
 gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei]
 gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei]
 gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei]
 gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei]
 gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei]
 gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei]
 gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei]
 gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 56/158 (35%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E  ++    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 144 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|148807558|gb|ABR13581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRLLAHYMRDER 186


>gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV]
 gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2]
 gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV]
 gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2]
          Length = 807

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 26/169 (15%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA---ILKLNTLSEAVSSD 302
           F  +G  L  + +   ++      + +L KD     +  + +    I     + + V  D
Sbjct: 398 FSTSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDD 457

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G +  +L    A+ T R S      Q LP ++  +                      A  
Sbjct: 458 GIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDD--------------------PEAGS 496

Query: 363 CVRSCIIASNGKKLVVA--DLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
            V+   ++  G   ++   D   +E  +LA ++ +   +     G D++
Sbjct: 497 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH 545


>gi|262212377|gb|ACY35805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RELFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262212227|gb|ACY35730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V A+L+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALFLPSPGQVMVAANLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIEAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|229472355|gb|ACQ72692.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRCCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|148807601|gb|ABR13600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAEMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|229472611|gb|ACQ72820.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTEGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 RVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472557|gb|ACQ72793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADRI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|148807507|gb|ABR13557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTKKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|262212135|gb|ACY35684.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342221|gb|ACY54621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 30/192 (15%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
              +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQDNLKLLN 180

Query: 523 DLTEGFACVVQE 534
                 A +  E
Sbjct: 181 LCCSQLAFIHDE 192


>gi|148807552|gb|ABR13578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNERVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|148807497|gb|ABR13553.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807509|gb|ABR13558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807517|gb|ABR13562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807522|gb|ABR13564.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807550|gb|ABR13577.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807573|gb|ABR13587.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807587|gb|ABR13594.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807591|gb|ABR13595.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807593|gb|ABR13596.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807595|gb|ABR13597.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|262342259|gb|ACY54640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 30/179 (16%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
              +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L 
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQDNLKLL 179


>gi|229472369|gb|ACQ72699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 52/184 (28%), Gaps = 30/184 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
           D  R    AS    +V ADLAGIE R+LA      ++ +        DI+     K    
Sbjct: 10  DQFRELFQASPSMVMVGADLAGIELRMLAHYLARYDEGRYADILLNGDIHQENADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-------SHCGLDLQQFSQNVKSTSTF 472
                    R   K +  A  Y  G                      +  +  + +    
Sbjct: 69  S--------RRQVKTVTYAFLYGAGDNKIGLSYDPQLSSKQATAKGEEIRAAYMDAVPGL 120

Query: 473 EDWEQAESHHLW------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           E    A  H               +    P  A+   L  +A  + K+  +  ++ +   
Sbjct: 121 EKLVTAVKHKAQSSGKIRAIDGRSISCSSPHKALNMLLQSSAGVIAKRWMQIVNENLPPF 180

Query: 521 WKDL 524
              L
Sbjct: 181 THQL 184


>gi|148807560|gb|ABR13582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIANEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|148807597|gb|ABR13598.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIAEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|262342099|gb|ACY54560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      + +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRRAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472237|gb|ACQ72633.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472591|gb|ACQ72810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 562

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 70/208 (33%), Gaps = 26/208 (12%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           + D   +   +++    +   +  G                T G+   +      L+ +E
Sbjct: 365 ITDPNRLKKVYDAKRTYVALNRYTGK---------------TKGIDFDVLLGAYLLDTNE 409

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA----TRELFKR 176
             T +E   A        S ++      +    +  +LF  +  R V A    T +L + 
Sbjct: 410 KSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQE 469

Query: 177 LIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           L   +        E  L ++   +   G ++D   + +++   +   +++++ I +    
Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGE 529

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE 258
              +      L + LF   G+ ++   +
Sbjct: 530 EF-NLNSPKQLGVILFEKMGLPVIKKQK 556


>gi|289705267|ref|ZP_06501666.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289558017|gb|EFD51309.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 578

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 92/318 (28%), Gaps = 63/318 (19%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK----------LQELIAQERKKLDEDI 224
            RL  L+  E    L+   I   G   D  +              Q       + L E I
Sbjct: 163 HRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLTEQLGPRPAQGERPARLQALAERI 222

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---------GTLKSILSHSNITQLAK 275
             +      S     +L   L    G+ +    +         G  +     + +  L +
Sbjct: 223 ADVLGSPGLSPDSQPSLLRALQTA-GVAVESTRQWDLKHWIDAGGAQREARAALLAPLLE 281

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              L RL ++       + L + +  DGR        G   TGRW+        +P    
Sbjct: 282 YKALARLWTANG----WHWLDQWIGDDGRFHAAY-LVGGVVTGRWAAHGGGAMQVPAG-- 334

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR  + A  G  L VAD + +E R+LA +A +
Sbjct: 335 ----------------------------VRDAVRADPGWTLTVADASQVEPRILAAMAAD 366

Query: 396 DWKIKAFANGEDIYVTTYAK--AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           +   +A     D+Y     +  A  T +       R   K+  L   Y         +  
Sbjct: 367 EALARAGTT-PDLYREVAEQGRAAGTALAD-----RGRAKIALLGAMYGSTTGDSAALMP 420

Query: 454 HCGLDLQQFSQNVKSTST 471
           H      +    ++  ++
Sbjct: 421 HLRRLYPRAIGLLERAAS 438


>gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin]
 gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin]
          Length = 704

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 84/324 (25%), Gaps = 59/324 (18%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           + ++ +      +   L     + +      +      +L H  +        +  L   
Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIE-LIKE 388

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K         N     +  DGR+ G++   GA  TGR +        +P      
Sbjct: 389 YLMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVP------ 441

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA---G 394
            I     +           +              +    V  D +G+E R L        
Sbjct: 442 SIRAAYGEPCRAAFGAEHNMKDGK---------PDPWIQVGVDASGLELRCLGHFMYRYD 492

Query: 395 EDWKIKAFANGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448
           E   ++    G DI+      A     P        R   K       Y  GA    ++ 
Sbjct: 493 EGEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFIYGFLYGAGAAKIGQIV 541

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYPEFAVKDK 497
              +      ++ F +   + +   +           W   E    W +        +  
Sbjct: 542 GGTSEDGKRLIKNFLEQTPAIAALREAITGALVKDSKWVGGEQKVTWKRRWVRGLDGRKV 601

Query: 498 LIGTACELVKKAWRAKHQGVLQLW 521
            + +    +    ++    + +LW
Sbjct: 602 HVRSPHAALNTLLQSAGALICKLW 625


>gi|148807534|gb|ABR13570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTYEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPFGRECRSFWWVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|229472261|gb|ACQ72645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472379|gb|ACQ72704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472605|gb|ACQ72817.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472221|gb|ACQ72625.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472277|gb|ACQ72653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472293|gb|ACQ72661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472375|gb|ACQ72702.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472445|gb|ACQ72737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472465|gb|ACQ72747.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472501|gb|ACQ72765.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472515|gb|ACQ72772.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472547|gb|ACQ72788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472579|gb|ACQ72804.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|148807569|gb|ABR13585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 29/185 (15%)

Query: 214 AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            +  +K  + +  K+T+  + S +Q       + +   +     +    + +L   +I +
Sbjct: 30  ERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE 89

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
                    L    + I    T  +    DGR+ G +   GA  TGR +        +P 
Sbjct: 90  AKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP- 143

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                           RS      G KL+  D +G+E R+LA  
Sbjct: 144 ----------------------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHY 181

Query: 393 AGEDW 397
             ++ 
Sbjct: 182 MRDER 186


>gi|302544332|ref|ZP_07296674.1| putative DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302461950|gb|EFL25043.1| putative DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 241

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G +LVVAD   +E RVLA I+ +   ++    G D+Y     +AF          +
Sbjct: 1   VADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGTGRDLYAELSDRAF--------AGR 52

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL 457
           R   K+  L   Y   +       +    
Sbjct: 53  RDQAKLALLGAVYGQTSGDGLKHLAALRR 81


>gi|229472365|gb|ACQ72697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  ++ ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMIGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|262342295|gb|ACY54658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P   +   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKVLNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472243|gb|ACQ72636.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472435|gb|ACQ72732.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472469|gb|ACQ72749.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472473|gb|ACQ72751.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472481|gb|ACQ72755.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472489|gb|ACQ72759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472497|gb|ACQ72763.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472575|gb|ACQ72802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472245|gb|ACQ72637.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K          Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATDKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472439|gb|ACQ72734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLPEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|229472257|gb|ACQ72643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 29/173 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R+   AS G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLAHYDGGRYGDVLLNGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G K                +      Q +   +      
Sbjct: 70  ------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKL 123

Query: 473 EDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
               ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 124 VTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|262212383|gb|ACY35808.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P   +   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKVLNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262212225|gb|ACY35729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K    P
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIP 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|148807548|gb|ABR13576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   +I +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKT 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 93  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        RS      G KL+  D +G+E R+LA    +
Sbjct: 144 -------------------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|148807524|gb|ABR13565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   ++ +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKT 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 93  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           +++ P G      RS      G KL+  D +G+E R+LA    +
Sbjct: 144 ----------------SVSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|148807536|gb|ABR13571.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 43/208 (20%)

Query: 204 DLVLKLQELIAQERKKL---------DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDL 253
           D+  K++++  Q +K L         ++   +L D +   +      +   L    G+  
Sbjct: 8   DITHKMRQITEQLQKVLPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKF 66

Query: 254 VDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
              +E       + +L   +I +         L    + I    T  +    DGR+ G +
Sbjct: 67  KQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRV 122

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              GA  TGR +        +P                                 RS   
Sbjct: 123 ITNGAV-TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWC 158

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDW 397
              G KL+  D +G+E R+LA    ++ 
Sbjct: 159 VPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--SVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVAGEQQVKWKRRWIKGLDGRKIHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHAALNTLLQSAGALICKLW 625


>gi|225388910|ref|ZP_03758634.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
 gi|225045019|gb|EEG55265.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
          Length = 67

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            F+ P+D+V+  QR   K +   + Y     G ++            + ++ +      T
Sbjct: 1   MFHIPLDQVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAVEYINKYFETYPGVKT 60

Query: 472 FED 474
           F D
Sbjct: 61  FLD 63


>gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 81/322 (25%), Gaps = 55/322 (17%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNR 281
           + ++ +      ++  L     +      +G        L+ +       Q A DLI   
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 282 LASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L        +          V+ DG++ G++   GA  TGR +        +P       
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--SVRSP 446

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW 397
              Q   A      +               I          D +G+E R LA  +A  D 
Sbjct: 447 YGEQCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDN 493

Query: 398 KIKAFA-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKV 447
              A      DI+      A+             R   K       Y  G          
Sbjct: 494 GEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGA 543

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------WMQDQYPEFAVKDKLI 499
            K           + +  + +          ES           W +        +   +
Sbjct: 544 GKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVAGEQQVKWKRRWIKGLDGRKIHV 603

Query: 500 GTACELVKKAWRAKHQGVLQLW 521
            +    +    ++    + +LW
Sbjct: 604 RSPHAALNTLLQSAGALICKLW 625


>gi|262342147|gb|ACY54584.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342267|gb|ACY54644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G   V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVTVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472269|gb|ACQ72649.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDII 176


>gi|148807515|gb|ABR13561.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T       DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLT----REKDGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|47934794|gb|AAT39835.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L  + G+     +E       + +L   +I +   
Sbjct: 35  EKTGKRLKDKVTEFNVGSRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKT 93

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 94  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 144

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           +++ P G      RS      G KL+  D +G+E R+LA    +
Sbjct: 145 ----------------SVSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRD 185

Query: 396 DW 397
           + 
Sbjct: 186 ER 187


>gi|148807526|gb|ABR13566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   ++ +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKT 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 93  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           +++ P G      RS      G KL+  D +G+E R+LA    +
Sbjct: 144 ----------------SVSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|47934798|gb|AAT39837.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L  + G+     +E         +L   +I +   
Sbjct: 18  EKTGKRLKDKVTEFNVGSRXQIAERLVGV-GVKFKQKTEKGAVVVNXKVLEGIDIPEAKT 76

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 77  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 127

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        RS      G KL+  D +G+E R+LA    +
Sbjct: 128 -------------------SVXAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRD 168

Query: 396 DW 397
           + 
Sbjct: 169 ER 170


>gi|229472259|gb|ACQ72644.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472389|gb|ACQ72709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472463|gb|ACQ72746.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472553|gb|ACQ72791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472573|gb|ACQ72801.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472587|gb|ACQ72808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472597|gb|ACQ72813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|262212223|gb|ACY35728.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLAKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|148807511|gb|ABR13559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFKVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14]
 gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14]
          Length = 704

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 84/324 (25%), Gaps = 59/324 (18%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           + ++ +      +   L     + +      +      +L H  +        +  L   
Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIE-LIKE 388

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K         N     +  DGR+ G++   GA  TGR +        +P      
Sbjct: 389 YLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVP------ 441

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA---G 394
            I     +           +              +    V  D +G+E R L        
Sbjct: 442 SIRAAYGEPCRAAFGAEHNMKDGK---------PDPWIQVGVDASGLELRCLGHFMYRYD 492

Query: 395 EDWKIKAFANGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448
           E   ++    G DI+      A     P        R   K       Y  GA    ++ 
Sbjct: 493 EGEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFIYGFLYGAGAAKIGQIV 541

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYPEFAVKDK 497
              A      ++ F +   + +   +           W   E    W +        +  
Sbjct: 542 GGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKV 601

Query: 498 LIGTACELVKKAWRAKHQGVLQLW 521
            + +    +    ++    + +LW
Sbjct: 602 HVRSPHAALNTLLQSAGALICKLW 625


>gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1]
 gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1]
          Length = 704

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 83/324 (25%), Gaps = 59/324 (18%)

Query: 229 DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           + ++ +      +   L     +        +      +L H  +        +  L   
Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIE-LIKE 388

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K         N     +  DGR+ G++   GA  TGR +        +P      
Sbjct: 389 YLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVP------ 441

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA---G 394
            I     +           +              +    V  D +G+E R L        
Sbjct: 442 SIRAAYGEPCRAAFGAEHNMKDGK---------PDPWIQVGVDASGLELRCLGHFMYRYD 492

Query: 395 EDWKIKAFANGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448
           E   ++    G DI+      A     P        R   K       Y  GA    ++ 
Sbjct: 493 EGEYVETILTG-DIHTKNQLAA---GLPT-------RDNAKTFIYGFLYGAGAAKIGQIV 541

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYPEFAVKDK 497
              A      ++ F +   + +   +           W   E    W +        +  
Sbjct: 542 GGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKV 601

Query: 498 LIGTACELVKKAWRAKHQGVLQLW 521
            + +    +    ++    + +LW
Sbjct: 602 HVRSPHAALNTLLQSAGALICKLW 625


>gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei]
 gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei]
 gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 56/160 (35%), Gaps = 16/160 (10%)

Query: 146 DCTRANHVQAWQLFGEYCKR-DV----------EATRELFKRLIPLSDGERDLWLLDQTI 194
              +    +  +LFG++ ++ D           +  ++    L   +D E  L  +   +
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEM 141

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++
Sbjct: 142 EIQGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVI 200

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             ++    + +    + +L     + +         KLN+
Sbjct: 201 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei]
 gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei]
 gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei]
 gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei]
 gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E   +    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 144 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|229472179|gb|ACQ72604.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALSYLLQGSAGCVAKLWMVHTHDVI 176


>gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei]
 gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei]
 gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei]
 gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei]
 gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei]
 gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei]
 gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei]
 gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E   +    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 144 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|229472507|gb|ACQ72768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        D +     K    
Sbjct: 9   PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDTHQVNADKI-GI 67

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 68  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 119

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 120 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 178


>gi|229472213|gb|ACQ72621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKVGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   +++              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIRLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 176


>gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei]
 gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei]
 gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei]
 gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei]
 gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei]
 gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E   +    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 144 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight]
          Length = 778

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 78/254 (30%), Gaps = 52/254 (20%)

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS---AILKLN 293
           QT      +F  +G  +  ++     S    + +  L KD     L +  +   ++ KL+
Sbjct: 371 QTLPDGSPVFSTSGDAMKGLALQGFTSAKLVNELASLEKDTGTYYLRTEYNKDGSVKKLS 430

Query: 294 TLSEAV---SSDGR--LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
            + + V     DG   +   L    A+ T R S      QNLPR                
Sbjct: 431 GMLQYVIPMDDDGSGIIHHRLNTC-ATITTRLSSGNPNLQNLPRD--------------- 474

Query: 349 RGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                       +  V+    +  G   +++  D + +E  +     G+   +     G 
Sbjct: 475 -----------GTSKVKQMFTSRFGSAGRIIEVDYSALEVVMGCVHTGDLKLLHLLQTGT 523

Query: 407 DIYVTTYAKAFNTPIDKVS---------------KEQRAIGKVMELALGYQGGAKVFKTM 451
           D++    A   N P + V                K++R   K    A  Y   AK     
Sbjct: 524 DMHCYRLAFRHNMPYEDVLKLAVEDEDGPDYKMWKQRRTDIKPPSFAAQYGATAKGIAFA 583

Query: 452 ASHCGLDLQQFSQN 465
                   Q+F  N
Sbjct: 584 TGLSLEFCQEFLDN 597


>gi|229472499|gb|ACQ72764.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 41/135 (30%), Gaps = 14/135 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R   I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y        T        L +     K       +  A    
Sbjct: 70  ------RRAVKTVTYAFLYGASDVKIGTS---YDSQLTEDQARKKGAEIRRAYPDAIPGL 120

Query: 483 LWMQDQYPEFAVKDK 497
             + +     A  D+
Sbjct: 121 ERLVEAVKTKAKVDR 135


>gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei]
 gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei]
 gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei]
 gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei]
 gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei]
 gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E   +    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 144 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|229472239|gb|ACQ72634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 29/173 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R+   AS G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNSDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G K                +      Q +   +      
Sbjct: 70  ------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKL 123

Query: 473 EDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
               ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 124 VTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|262212347|gb|ACY35790.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A+ G+  V ADL+GIE R+L+  +A  D          DI+     K   T    
Sbjct: 13  RRLFMATPGQVTVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKI-GTA--- 68

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK---------TMASHCGLDLQQFS-QNVKSTSTFE 473
                R + K +  A  Y  G +              A   G ++++   + +   S   
Sbjct: 69  -----RKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSDLL 123

Query: 474 DWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQG 516
              ++ ++  +++           P  A+   L G+A  + K+     +  
Sbjct: 124 SAVKSAANRGFVKGIDGRKILVDSPHKALNYLLQGSAGVVAKRWMVIANDN 174


>gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P]
 gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P]
          Length = 704

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 83/324 (25%), Gaps = 59/324 (18%)

Query: 229 DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           + ++ +      +   L     +        +      +L H  +        +  L   
Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIE-LIKE 388

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K         N     +  DGR+ G++   GA  TGR +        +P      
Sbjct: 389 YLMIQKRIGQVAEGDNGWLRMIGDDGRIHGSVNPNGAV-TGRATHSFPNVAQVP------ 441

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA---G 394
            I     +           +              +    V  D +G+E R L        
Sbjct: 442 SIRAAYGEPCRAAFGAEHNMKDGK---------PDPWIQVGVDASGLELRCLGHFMYRYD 492

Query: 395 EDWKIKAFANGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448
           E   ++    G DI+      A     P        R   K       Y  GA    ++ 
Sbjct: 493 EGEYVETILTG-DIHTKNQLAA---GLPT-------RDNAKTFIYGFLYGAGAAKIGQIV 541

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYPEFAVKDK 497
              A      ++ F +   + +   +           W   E    W +        +  
Sbjct: 542 GGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKV 601

Query: 498 LIGTACELVKKAWRAKHQGVLQLW 521
            + +    +    ++    + +LW
Sbjct: 602 HVRSPHAALNTLLQSAGALICKLW 625


>gi|262212381|gb|ACY35807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 28/171 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A+ G+ +V ADL+GIE R+L+  +A  D          DI+     K        
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKI-GIT--- 68

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK---------TMASHCGLDLQQFS-QNVKSTSTFE 473
                R + K +  A  Y  G +              A   G ++++   + +   S   
Sbjct: 69  -----RKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSDLL 123

Query: 474 DWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQG 516
              ++ ++  +++           P  A    L G+A  + K+     +  
Sbjct: 124 SAVKSAANRGFVKGIDGRKILVDSPHKAPNYLLQGSAGVVAKRWMVIANDN 174


>gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
           cruzi]
          Length = 274

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 84/285 (29%), Gaps = 49/285 (17%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + +E  VLA ++ +   ++   +  D +    +     P + V        K  
Sbjct: 1   MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVV----RKAK-- 54

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                                    Q  Q  K+ S    +    +            A  
Sbjct: 55  -----------------QERDPHYIQLRQQAKTFSFQRQYGAGIA----------TIATT 87

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             L     E +  A    ++ + + ++ + +     V+ G     R             +
Sbjct: 88  TGLTEHEVERLISAEEQHYKDLSRYYRLVMD----CVEAGADRLLRLRTLDAATWSPAMR 143

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY-GGKLTENIVQAISRDILCEGM 614
           R + +  P    +V     G           + R + Y    L   IVQ +   I+    
Sbjct: 144 RMILLTEPLHYFVV---PTGSKFDFAKDKKSIPRLKNYPVQGLAGEIVQIMCGKIVR--- 197

Query: 615 KNATKNGYD----IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           +   K  YD    +V TVHD +  +   +    V   +  +M+  
Sbjct: 198 RFYEKRNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSST 242


>gi|229472541|gb|ACQ72785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIG- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|262212369|gb|ACY35801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R+  + S G+ +V ADL+GIE R+L+      +D +        DI+     K    
Sbjct: 10  PRFRALSLPSPGQVMVAADLSGIELRMLSHFPAKYDDGRYAGILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       + +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +  S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 179


>gi|148807493|gb|ABR13551.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   +I +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKL 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 93  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        RS      G KL+  D +G+E R+LA    +
Sbjct: 144 -------------------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|302652096|ref|XP_003017908.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
 gi|291181493|gb|EFE37263.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
          Length = 1137

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 51/241 (21%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           A+D I +++      + K   L + +S D ++                     PQ +P  
Sbjct: 635 ARDRITSQMVVYKKDLEKTGALCKELSPDSKV-----------------GFILPQVIPMG 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
             +   +  T                    +++ + A  G   V AD+   E  + A + 
Sbjct: 678 TITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLV 731

Query: 394 GEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
           G+                    A G D++  T  K             R   KV      
Sbjct: 732 GDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNYAKVFNYGRI 782

Query: 441 YQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           Y  G K   T+       + +       ++  K T       +  S + +++     F  
Sbjct: 783 YGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVF 842

Query: 495 K 495
            
Sbjct: 843 N 843


>gi|229472433|gb|ACQ72731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R     + G+ +V ADL+GIE R+LA      +  +        DI+     K    
Sbjct: 10  GRFRELFKPTPGQVMVGADLSGIELRMLAHYLARYDSGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG-AKVFKTMASHCGLD---------LQQFSQNVKST 469
                    R   K +  A  Y  G  K+ K++ S               + +   +   
Sbjct: 69  S--------RKQVKTVTYAFLYGAGDVKIGKSLDSSLSDKKAKAKGSEIRKAYVSAIDGL 120

Query: 470 STFEDWEQAESHHLWMQDQYPE--------FAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  ++     +++              A+   L G+A  L K+      Q + Q 
Sbjct: 121 GDLLAAVKSAGDRGFVKAIDQRKILVDSSHKALNYLLQGSAAVLAKRWMLINQQTIEQT 179


>gi|47934634|gb|AAT39755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 51/237 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR------------------SSR 236
              G+ +D++    L + I  + +++ E + K+   I+                   +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +         L    + I   
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T  +    DGR+ G +   GA  TGR +        +P                    +
Sbjct: 120 LTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------------S 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
           ++ P G      RS      G KL+    +G+E R+LA    ++            +
Sbjct: 155 VSAPYGKEC---RSFWCVPEGHKLIGCGASGLELRMLAHYMRDERYTNEILMRRHPH 208


>gi|148807502|gb|ABR13555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   +I +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKL 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 93  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        RS      G KL+  D +G+E R+LA    +
Sbjct: 144 -------------------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|262212261|gb|ACY35747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW--KIKAFANGEDIYVTTYAKAFNTPI 421
           RS    S+    V +D +G+E R L   ++  D     +   NG DI+     + + T  
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKLAEEVVNG-DIHTALA-EIYGTD- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWE 476
                  R  GK +   L Y GG       A        +  Q ++         F D  
Sbjct: 70  -------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            A                  +L G     +    ++    + +LW
Sbjct: 123 AAIQERAKSGVLKGLDGRPIRLQGKNHAALNCLLQSAGAIICKLW 167


>gi|47934836|gb|AAT39856.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 219

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 43/187 (22%)

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-- 291
           +      +   L    G     ++  T K+++  + + ++  D  L  L      + K  
Sbjct: 66  NPSSRDHIAWILKTHCGWTPSSLT-STGKAVIDETVLKEIGTDTALKFLTL--LDLTKQL 122

Query: 292 ------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +N   + V++  R+        A  T R +        +P  ER          
Sbjct: 123 GMISEGVNAWQKLVTTSSRIHHYCSTNTA--TFRCAHRTPNLGQVPSDER---------- 170

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FA 403
                              R    A+ G+++V ADL+GIE R+LA  +A  D    A   
Sbjct: 171 ------------------FRRLFTATPGQRMVAADLSGIELRMLAHYLARYDGGRYANIL 212

Query: 404 NGEDIYV 410
              DI+ 
Sbjct: 213 TTGDIHT 219


>gi|148807491|gb|ABR13550.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L    I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIGIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|262212259|gb|ACY35746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFAN-GEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDTSGLELRCLGHYLSRYDGGKFAEEGVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342321|gb|ACY54671.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G  +V ADLAGIE R+LA  +A  D         NG  I+     K      
Sbjct: 13  RKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGG-IHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQPSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472467|gb|ACQ72748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 55/174 (31%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+   AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGCAGCVAKLWMVHTHDVI 176


>gi|194761126|ref|XP_001962783.1| GF15619 [Drosophila ananassae]
 gi|190616480|gb|EDV32004.1| GF15619 [Drosophila ananassae]
          Length = 1134

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 54/315 (17%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G KLV AD+   E  +      A+  GE             + +N
Sbjct: 781  DRLGSELRSMVQAPPGYKLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 840

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G +  +T+             
Sbjct: 841  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQQFAETLLRQFNPTFSASEA 891

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F            +     E+ ++++      +    ++ A    + Q  + +
Sbjct: 892  KAKAMKMFS-----------ITKGKREYRLREEFHDELDDRAYSSYEASRLAI-QRNRTI 939

Query: 525  TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
             E F   + +GG+ SA               R   I   S  +     + G  S    A 
Sbjct: 940  GEVFHRPIWQGGTESA------------MFNRLEDIATQSQPQT--PFLGGRLSRALEAD 985

Query: 585  SQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            S   +E+ +       +VQ+ + D   ++   M+          L+ HDE+     +   
Sbjct: 986  SDPTQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGPHVRFCLSFHDELRYLVKEEVA 1045

Query: 642  FSVG---TLCSLMTK 653
            +       + +LMT+
Sbjct: 1046 YKAALAMHITNLMTR 1060



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 37  WDDEPVKLWDRTEQSAMP----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            + EP+   D    S  P     +L+    +   + V HN  ++R   K+   I+    R
Sbjct: 220 INMEPL---DIDTDSERPHYRSDELIPLGTEGPGLVVGHNVSYDRARLKEQYLIEDTGYR 276

Query: 93  WICTSVLARTNG---------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           ++ T  L              L S  + A   L + +  +     +          +   
Sbjct: 277 FLDTMSLHMCVSGVTSYQRAMLKSKKEPAPEDLGWLDKSSLNSLVEVHRLYCGGEPLSKE 336

Query: 144 PY----DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
           P     + T     Q +Q    YC  DVEAT  + + L PL             + + G 
Sbjct: 337 PRNIFVEGTLEQVRQHFQSLVNYCASDVEATHRVLQALYPLYAERFPHPASLAGMLEMGS 396

Query: 200 R---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS-----RQTYALRMYLFLITG- 250
               ++ +   +         + L+ +           +      + Y   ++L+     
Sbjct: 397 AYLPVNSNW-ERYIRESQLTYEDLNIEAKHHLGRRAEEACSLLLDEQYRKNLWLWDEDWS 455

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           +  + + +   +  L               RL +    +    +L  A   
Sbjct: 456 VQELKLKQPPKQKPLPTVEQPDSGSTAEQRRLQAKFQYLYDQRSLLPARRP 506


>gi|327292550|ref|XP_003230973.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
 gi|326466779|gb|EGD92232.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
          Length = 1137

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 51/241 (21%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           A+D I +++      + K   L + +S D ++                     PQ +P  
Sbjct: 635 ARDRITSQMVVYKKDLEKTGALGKELSPDSKV-----------------GFILPQVIPMG 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
             +   +  T                    +++ + A  G   V AD+   E  + A + 
Sbjct: 678 TITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLV 731

Query: 394 GEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
           G+                    A G D++  T  K             R   KV      
Sbjct: 732 GDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNAKVFNYGRI 782

Query: 441 YQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           Y  G K   T+       + +       ++  K T       +  S + +++     F  
Sbjct: 783 YGAGLKFAATLLRQFNPSMSETETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVF 842

Query: 495 K 495
            
Sbjct: 843 N 843


>gi|229472251|gb|ACQ72640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 124 VEAVKCKARQYSYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|229472229|gb|ACQ72629.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472329|gb|ACQ72679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 124 VEAVKCKARQYSYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3]
 gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3]
 gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3]
          Length = 372

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 98/373 (26%), Gaps = 72/373 (19%)

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNRLAS 284
           + +      ++  L     +      +G        L+ +       Q A DLI   L  
Sbjct: 1   MFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 60

Query: 285 SGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                 +          V+ DG++ G++   GA  TGR +        +P          
Sbjct: 61  QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPYGE 117

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIK 400
           Q   A      +               I          D +G+E R LA  +A  D    
Sbjct: 118 QCRAAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHFMARFDNGEY 164

Query: 401 AFA-NGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGG-------AKVFKT 450
           A      DI+            ++++ E   R   K       Y  G           K 
Sbjct: 165 AHEILNGDIHTK----------NQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKE 214

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------------QDQYPE 491
                     + +  + +          ES                              
Sbjct: 215 RGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRSP 274

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISARRVANV 546
            A  + L+ +A  L+ K W  K + +     L+   D    +   + +   + A R   +
Sbjct: 275 HAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWIHDEIQV-ACRTEEI 333

Query: 547 PRLVMRRHKRDVH 559
            + V+   +  + 
Sbjct: 334 AKTVIEVAQEAMR 346


>gi|229472225|gb|ACQ72627.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472385|gb|ACQ72707.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 124 VEAVKCKARQYSYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262212165|gb|ACY35699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 30/192 (15%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V AD AGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADPAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
              +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L  
Sbjct: 122 KLLEAIKKASERGFIRALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQDNLKLLN 180

Query: 523 DLTEGFACVVQE 534
                 A +  E
Sbjct: 181 LCCSQLAFIHDE 192


>gi|262212191|gb|ACY35712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE RVL+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRVLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|148807500|gb|ABR13554.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807556|gb|ABR13580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   ++ +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKT 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 93  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           +++ P G      RS      G KLV  D +G+E R+LA    +
Sbjct: 144 ----------------SVSAPYGKEC---RSFWCVPEGHKLVGIDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|229472471|gb|ACQ72750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 124 VEAVKCKARQYSYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 106/352 (30%), Gaps = 98/352 (27%)

Query: 150 ANHVQAWQLFGE----YCKRDVEATRELFKRLI-------PLSDGERDLWLLDQTINDRG 198
            N    W  +      YC +D + T  L++ L             E D+ +L       G
Sbjct: 51  KNDSNDWSTYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASG 110

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKL--------------------------TDGII 232
           +R D+D  ++++  +  E   + E I K+                          T    
Sbjct: 111 FRFDMDAAVRVRAQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTD 170

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL------------- 279
            +      +   L    G     ++E     +   + ++++ +D+ L             
Sbjct: 171 FNPTSRQNIAWALQTFRGARFTKITETGKPKV-DEATLSEV-RDIALSAGNQQLHDECEM 228

Query: 280 -NRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             RL +    + +L    N+   ++  DG +  +     +++TGR +             
Sbjct: 229 FIRLLTLQKWLGQLSEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNL------- 279

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI-- 392
                          G+ ++ P        R   +   G  +V ADL G+E R+L     
Sbjct: 280 ---------------GQVVSAPWA------RELFVPHPGHIMVGADLEGLELRLLGHYLA 318

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           A ++          DI+     +             R   K +  A  Y  G
Sbjct: 319 AFDEGSFAEVVVNGDIHQQNADRV-GCT--------RTQVKTLTYAFIYGAG 361


>gi|262342119|gb|ACY54570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 30/193 (15%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               +  +  S   +++           P  A+   L G +  ++ K W   +Q  L+L 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQNNLKLL 179

Query: 522 KDLTEGFACVVQE 534
                  A +  E
Sbjct: 180 DLCCSQLAFIHDE 192


>gi|262342127|gb|ACY54574.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A+ G  +V AD++GIE R+L+  +A  +  +       DI+     K        
Sbjct: 13  RRLFMATPGLVMVGADVSGIELRMLSHYLARYNTYLGDNLLNGDIHQLNADKI-GIT--- 68

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK---------TMASHCGLDLQQFS-QNVKSTSTFE 473
                R + K +  A  Y  G +              A   G ++++   + +   S   
Sbjct: 69  -----RKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSDLL 123

Query: 474 DWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQG 516
              ++ ++  +++           P  A+   L G+A  + K+     +  
Sbjct: 124 SAVKSAANRGFVKGIDGRKILVDSPHKALNYLLQGSAGVVAKRWMVIANDN 174


>gi|262212231|gb|ACY35732.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRCADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|148807495|gb|ABR13552.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 40/185 (21%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQ--- 272
           ++   +L D +   +      +   L    G+     +E       + +L   +I +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKT 92

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           + + L+L + A+   + L           DGR+ G +   GA  TGR +        +P 
Sbjct: 93  IDEYLMLQKRAAQIDSWLTHE-------KDGRVHGRVITNGAV-TGRMTHHSPNLAQIP- 143

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                           RS      G KL+  D +G+E R+LA  
Sbjct: 144 ----------------------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHY 181

Query: 393 AGEDW 397
             ++ 
Sbjct: 182 MRDER 186


>gi|229472387|gb|ACQ72708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 14/139 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y        T        L +     K +     +  A    
Sbjct: 70  ------RRAVKTVTYAFLYGASDVKIGTS---YDSQLTEDQARKKGSEIRRAYLDAIPGL 120

Query: 483 LWMQDQYPEFAVKDKLIGT 501
             + +   + A +   I +
Sbjct: 121 EQLVEAVKKKAKETGSIRS 139


>gi|148807539|gb|ABR13572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    +GR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----NGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|262342213|gb|ACY54617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKAVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212187|gb|ACY35710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKAVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|238060029|ref|ZP_04604738.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237881840|gb|EEP70668.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 554

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 77/256 (30%), Gaps = 47/256 (18%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L   I +        +     L    F   G++L + +   +   + H  +  + 
Sbjct: 204 RRLAELAARIAEAFGVRQVHADSPAELLR-AFARAGVELPN-TRAWVLRGVDHPAVPLVL 261

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           +   L R+ ++           +A    GR        G   +GRW+        +P+  
Sbjct: 262 EHKELYRIWTAHGW-----AWRDAWVRGGRFHPEYVPGGVV-SGRWATRGGGALQIPK-- 313

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD   +E RVLA ++G
Sbjct: 314 ----------------------------VIRRAVVADPGWRLVVADAGQLEPRVLAAVSG 345

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +     A   G+         +F           R   KV  L   Y     +     + 
Sbjct: 346 DARLAAAGGAGDLY-AALARDSFG--------GDRPRAKVALLGAMYGQTGGMAVPALTV 396

Query: 455 CGLDLQQFSQNVKSTS 470
              +       V++ +
Sbjct: 397 LRRNYPTAFAYVEAAA 412


>gi|262212217|gb|ACY35725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 29/173 (16%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAK 415
           G +    R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K
Sbjct: 6   GPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADK 65

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQN 465
                        R + K +  A  Y  G +                       Q + + 
Sbjct: 66  I-GIS--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 466 VKSTSTFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
           +       +  +  S   +++           P  A+   L G    L K+  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNYAILAKRWM 169


>gi|229472223|gb|ACQ72626.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
                 R   K +  A  Y   
Sbjct: 70  ------RRAVKTVTYAFLYGAS 85


>gi|262212085|gb|ACY35659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 30/192 (15%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
              V        K +  A  Y  G +                       Q + + +    
Sbjct: 70  HKLV--------KTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
              +  +  S   +++           P  A+   L G +  ++ K W   +Q   +L  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMVINQNNPKLLN 180

Query: 523 DLTEGFACVVQE 534
                 A +  E
Sbjct: 181 LCCSQLAFIHDE 192


>gi|307207302|gb|EFN85052.1| DNA polymerase subunit gamma-1, mitochondrial [Harpegnathos saltator]
          Length = 1161

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 141/439 (32%), Gaps = 82/439 (18%)

Query: 251  IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS--------- 301
            +   D     + + LS   + + ++++ L  L SS + +LK   +     +         
Sbjct: 677  LPHKDGKGKNVGNPLSKDFLNKFSENV-LAGLDSSATELLKNARMLSYWRNNRDRILSQL 735

Query: 302  ----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
                D R   +       RT R+   + Q         S  +  + ++      + A P 
Sbjct: 736  VIWLDDRSLPSAVTKFKRRTARYGTIIPQVVV------SGTLTRRAVERTWMTASNASPE 789

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGE---------DWKIKAFA 403
             + S+ +RS + A  G  +V AD+   E  +      A  +G             I   +
Sbjct: 790  RIGSE-LRSMVQAPPGYNIVGADVDSQELWIASMLGDAHHSGSIHGATPFGWMTLIGTKS 848

Query: 404  NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            NG D++  T                R   KV+  A  Y  G K  + +       +    
Sbjct: 849  NGTDMHSVTAKAV-GIS--------RDHAKVINYARIYGAGQKFAEQLLKQFNPSMTDAE 899

Query: 464  QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD-KLIGTACELVKKAWRAKHQGVLQLWK 522
               KS   F   +  +   L  + ++    ++D          + K +    Q + Q  +
Sbjct: 900  AAAKSRKMFTLTKGKKVFRL--KAEFVNDNIEDIPYTSFQAYQIAKLYGKTLQEMFQRSE 957

Query: 523  DL--TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +  +E       E  + S R V                +    SR L  ++   D ++L
Sbjct: 958  WVGGSESAMFNRLEEIASSERPVTP-------------FLNSRLSRALEVTNTDNDDNFL 1004

Query: 581  NTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                                +VQ+ + D   ++   M+   ++     L+ HDE+    P
Sbjct: 1005 --------------PTKINWVVQSGAVDFLHLMLVSMRWLMRDNARFCLSFHDEVRYLVP 1050

Query: 638  DTPYFSVG---TLCSLMTK 653
                ++      + +L+T+
Sbjct: 1051 SRYKYNAALAMHVTNLLTR 1069



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 11/143 (7%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTS-VLARTNGLPSSLKNACLALNFSEHLTKM 125
           + V HN  ++R   K+   ++    R++ T  +    +GL S  ++  ++          
Sbjct: 257 IVVGHNVSYDRSRIKEQYWMNCTGTRFLDTMSLHVCVSGLNSYQRSLLMSKKEDSEKDDW 316

Query: 126 EEGKALI------ARFCKGSIDSPPYD----CTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +   +L         +C   I   P D     T  +    + +   YC  DV AT  +  
Sbjct: 317 QFNTSLNNLTEVHKLYCGYEISKQPRDIFVEGTLEDVKNDFNMLMSYCASDVVATHNVLV 376

Query: 176 RLIPLSDGERDLWLLDQTINDRG 198
            + PL        +    + + G
Sbjct: 377 NVFPLFQERFPHPVTLAGMLELG 399


>gi|262212183|gb|ACY35708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKAVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32]
 gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32]
          Length = 704

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 90/331 (27%), Gaps = 73/331 (22%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK---SILSHSNITQLAKDLILNRLASS 285
           + ++ +      + + L     I      +G  K    +L H  +    K   ++ L   
Sbjct: 330 EHVVFNPSSRDHIALKLKEAGWIPTEFTDKGAPKVDDEVLEHVRVDDPEKQRCID-LIKE 388

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K               V  DG++ G++   GA  TGR +        +P      
Sbjct: 389 YLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGAV-TGRATHSFPNLGQVPG----- 442

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG--------KKLVVADLAGIEARVL 389
                          +  P G      R+   A +               D +G+E R L
Sbjct: 443 ---------------VRSPYGEPC---RAAFGAEHHLDGLTGLPWVQAGIDASGLELRCL 484

Query: 390 AW-IAGEDWKIKA-FANGEDIYVTT--YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444
           A  ++  D    A      DI+      A+             R   K       Y  G 
Sbjct: 485 AHFMSKYDGGAYADVILNGDIHTVNQQAAEL----------PTRDNAKTFIYGFLYGAGD 534

Query: 445 --AKVFKTMASHCGLDL-QQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYP 490
                        G +L ++F +N  + +   +           W   E    W +    
Sbjct: 535 EKIGQIVGAGKERGKELKKKFLENTPAIAALREGIQQTLVESSRWVAGEQKVKWKRRWIK 594

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
               +   + +    +    ++    + +LW
Sbjct: 595 GLDGRKVHVRSPHAALNTLLQSAGALICKLW 625


>gi|229472381|gb|ACQ72705.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472595|gb|ACQ72812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
                 R   K +  A  Y   
Sbjct: 70  ------RRAVKTVTYAFLYGAS 85


>gi|262212243|gb|ACY35738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 20/166 (12%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANG---EDIYVTTYAKAFNTP 420
           RS    S+    V +D +G+E R L   ++  D     FA G    DI+     + + T 
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDG--GKFAEGVVNGDIHAALA-EIYGTD 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDW 475
                   R  GK +   L Y GG       A        +  Q ++         F D 
Sbjct: 70  --------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADL 121

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             A                  +L G     +    ++    + +LW
Sbjct: 122 NAAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|229472487|gb|ACQ72758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 12/132 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG-AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y     K+  +  S    D  +   +    +  +     E  
Sbjct: 70  ------RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQL 123

Query: 482 HLWMQDQYPEFA 493
              ++ +  E  
Sbjct: 124 VEAVKKEAKEAG 135


>gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei]
 gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    +   +    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLKKQAQTDLFTDMEMPLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 144 QGITLNAKALKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|262212139|gb|ACY35686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212161|gb|ACY35697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212053|gb|ACY35643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGGKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472247|gb|ACQ72638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 124 VEAVKRKARQYSYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262212239|gb|ACY35736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A     +  +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSNASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 619

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 123/443 (27%), Gaps = 140/443 (31%)

Query: 70  AHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           AHN   F+R    K  G ++P    + T V+ R    P  L           +  +M   
Sbjct: 70  AHNGINFDRKALAKVTGYEMPYTAILDTLVMGR-LAEPERLGG----HKLESYGIEMG-- 122

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGE----YCKRDVEATRELFKRLIPLS--- 181
                               + +H + W  + E    YC++D+  T  L+K+L  +    
Sbjct: 123 ------------------ILKGSHNE-WDRYSEEMRSYCEQDIAVTNALYKKLERVQTWG 163

Query: 182 ---DGERDL-WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII----- 232
              D E  + +L+D  +   G+ +++   + L   + + R     ++ ++   I      
Sbjct: 164 ESCDLEHTVAYLIDLQM-TNGFPLNMREAMTLAAQLWERRDGYLAEMQRVFPPIYVSAGA 222

Query: 233 ---------------------------RSSRQTYALRMYLFLITGIDLVDMSEGT---LK 262
                                       +    Y +   L    G       +G     +
Sbjct: 223 VTPKRTMKREGREYTAGAPYTKIVLQEFNPGSEYHVANRLKRKYGWRAPLTEKGNPNITE 282

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-------LSEAVSSDGRLRGTLQFYGAS 315
           ++L   +  ++   L   R+    + +                   + R+ G +   GA 
Sbjct: 283 AVLKKLDFPEVQPLLHFARVDKQWTQLASPPKKNGTGGGWIHHADENHRVHGYVNSNGAV 342

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR +       N+                                 +R   I S G K
Sbjct: 343 -TGRMTHSRPNSANI------------------------------DKEMRHIWIPSMGMK 371

Query: 376 LVVADLAGIEARVLAW--------------IAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            V  D  G+E RVLA               + G+         G D +            
Sbjct: 372 QVGCDAEGLELRVLAHYLARYDGGRLTRQLLDGDKAL------GTDAHS--------VNR 417

Query: 422 DKVSKEQRAIGKVMELALGYQGG 444
           D      R   K +     Y  G
Sbjct: 418 DNTDLFSRDGAKTLLYGSLYGAG 440


>gi|262212133|gb|ACY35683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEVRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212299|gb|ACY35766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG-------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                 R  GK +   L Y GG       A   K+ AS  G +++   + ++  S F D 
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRG--KIMRGLSGFADL 121

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             A                  +L G     +    ++    + +LW
Sbjct: 122 NAAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212221|gb|ACY35727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKV-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|296123324|ref|YP_003631102.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296015664|gb|ADG68903.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 686

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 77/265 (29%), Gaps = 29/265 (10%)

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF------QPQNLP 331
            L  +  +G  +     L  A++   R           R    S          +    P
Sbjct: 361 PLQVIQHTGRELTASARLDAAMNPILRKIEQHGLLLDERWNPSSTNDLPELKRMRLSAAP 420

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
              R    L+Q      R              +R  ++   G+ L+ AD    E RV A 
Sbjct: 421 TGGRLRTRLSQNRSRTGRITASQYSCQSIPLRLRPAVVVGEGRTLISADYRAFEWRVAAA 480

Query: 392 IAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQRAIGK----VMELALGYQGGAK 446
           ++ +   +  F +   D+Y    ++ F+     VS   R I K             G A 
Sbjct: 481 LSQDSQLLTDFGSPDFDLYAFLVSQ-FDDLKHDVSSA-RPIIKGDSIQALYDFIDDGTAS 538

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ-------------DQYPEFA 493
             KT  +     +Q+    + +       E   S  +                      A
Sbjct: 539 DGKTSVAEA---IQRLFPRLMTWRQSVAAEALSSGFVTTPLGRVIDLTEGQDDLNRQRQA 595

Query: 494 VKDKLIGTACELVKKAWRAKHQGVL 518
           V + +   A EL K+A  A  Q + 
Sbjct: 596 VNNLIQAHAAELFKQALIAMDQRLP 620


>gi|262212205|gb|ACY35719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGG----------AKVFKTMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G           +  +          Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLRSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342229|gb|ACY54625.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|326472602|gb|EGD96611.1| DNA polymerase gamma [Trichophyton tonsurans CBS 112818]
          Length = 1140

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 51/241 (21%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           A+D I +++      + K  +L   +S D ++                     PQ +P  
Sbjct: 638 ARDRITSQMVVYKKDLEKTGSLGRELSPDSKV-----------------GFILPQVIPMG 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
             +   +  T                    +++ + A  G   V AD+   E  + A + 
Sbjct: 681 TITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLV 734

Query: 394 GEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
           G+                    A G D++  T  K             R   KV      
Sbjct: 735 GDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNAKVFNYGRI 785

Query: 441 YQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           Y  G K   T+       + +       ++  K T       +  S + +++     F  
Sbjct: 786 YGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVF 845

Query: 495 K 495
            
Sbjct: 846 N 846


>gi|229472281|gb|ACQ72655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212143|gb|ACY35688.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212169|gb|ACY35701.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212175|gb|ACY35704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212179|gb|ACY35706.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212233|gb|ACY35733.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212337|gb|ACY35785.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342211|gb|ACY54616.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342215|gb|ACY54618.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342217|gb|ACY54619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342223|gb|ACY54622.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342231|gb|ACY54626.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342253|gb|ACY54637.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342255|gb|ACY54638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342225|gb|ACY54623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472425|gb|ACQ72727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 14/139 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y        T        L +     K +     +  A    
Sbjct: 70  ------RRAVKTVTYAFLYGASDVKIGTS---YDSQLTEDQARKKGSEIRRAYLDAIPGL 120

Query: 483 LWMQDQYPEFAVKDKLIGT 501
             + +   + A +   I +
Sbjct: 121 EQLVEAVKKKAKETGSIRS 139


>gi|194100488|ref|YP_002003333.1| gp5 [Yersinia phage Yepe2]
 gi|193201221|gb|ACF15702.1| gp5 [Yersinia phage Yepe2]
          Length = 706

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 84/326 (25%), Gaps = 61/326 (18%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           + ++ +      +   L     + +      +      +L H  +        +  L   
Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIE-LIKE 388

Query: 286 GSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
              I K         N     +  DGR+ G++   GA  TGR +        +P      
Sbjct: 389 YLMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVP------ 441

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA---G 394
            I     +           +              +    V  D +G+E R L        
Sbjct: 442 SIRAAYGEPCRAAFGAEHNMKDGK---------PDPWIQVGVDASGLELRCLGHFMYRYD 492

Query: 395 EDWKIKAFANGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVME--LALGYQGGA----K 446
           E   ++    G DI+      A     P        R   K         Y  GA    +
Sbjct: 493 EGEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFNGIYGFLYGAGAAKIGQ 541

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYPEFAVK 495
           +    +      ++ F +   + +   +           W   E    W +        +
Sbjct: 542 IVGGTSEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGR 601

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLW 521
              + +    +    ++    + +LW
Sbjct: 602 KVHVRSPHAALNTLLQSAGALICKLW 627


>gi|148807603|gb|ABR13601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAEMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+ A    ++ 
Sbjct: 166 IGCDASGLELRMPAHYMRDER 186


>gi|148807599|gb|ABR13599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 69/201 (34%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +    +I   L S   A  ++++       DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPE--AKMIYEYLMSQKRA-AQIDSWLTH-EKDGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           +GR +        +P                                 RS      G KL
Sbjct: 129 SGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLAHYMRDER 186


>gi|262212315|gb|ACY35774.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNV 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342167|gb|ACY54594.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDTSGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212141|gb|ACY35687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
                 +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLGAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472305|gb|ACQ72667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472551|gb|ACQ72790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212067|gb|ACY35650.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212073|gb|ACY35653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212087|gb|ACY35660.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212103|gb|ACY35668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212107|gb|ACY35670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212117|gb|ACY35675.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212149|gb|ACY35691.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212151|gb|ACY35692.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212163|gb|ACY35698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212185|gb|ACY35709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212199|gb|ACY35716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342209|gb|ACY54615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342219|gb|ACY54620.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342245|gb|ACY54633.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|148807564|gb|ABR13584.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 29/185 (15%)

Query: 214 AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            +  +K  + +  K+T+  + S +Q       + +   +     +    + +L   +I +
Sbjct: 30  ERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE 89

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
                    L    + I    T  +    +GR+ G +   GA  TGR +        +P 
Sbjct: 90  AKMIYEYLMLQKRAAQIDSWLTHEK----EGRVHGRVITNGAV-TGRMTHHSPNLAQVP- 143

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                           RS      G KL+  D +G+E R+LA  
Sbjct: 144 ----------------------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHY 181

Query: 393 AGEDW 397
             ++ 
Sbjct: 182 MRDER 186


>gi|229472321|gb|ACQ72675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 41/135 (30%), Gaps = 14/135 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R   I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y        T        L +     K       +  A    
Sbjct: 70  ------RRAVKTVTYAFLYGASDVKIGTS---YDSQLTEDQARKKGAEIRRAYLDAIPGL 120

Query: 483 LWMQDQYPEFAVKDK 497
             + +     A  D+
Sbjct: 121 ERLVEAVKTKAKVDR 135


>gi|262342313|gb|ACY54667.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342181|gb|ACY54601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342171|gb|ACY54596.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342165|gb|ACY54593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 16  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 72

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 73  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 126

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 127 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 170


>gi|262342163|gb|ACY54592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 16  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 72

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 73  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 126

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 127 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 170


>gi|262212343|gb|ACY35788.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212289|gb|ACY35761.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212305|gb|ACY35769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212287|gb|ACY35760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212277|gb|ACY35755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212271|gb|ACY35752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212265|gb|ACY35749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212247|gb|ACY35740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212251|gb|ACY35742.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212253|gb|ACY35743.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212257|gb|ACY35745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212267|gb|ACY35750.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212303|gb|ACY35768.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342155|gb|ACY54588.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342159|gb|ACY54590.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342169|gb|ACY54595.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212245|gb|ACY35739.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212237|gb|ACY35735.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212241|gb|ACY35737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212279|gb|ACY35756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212285|gb|ACY35759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212291|gb|ACY35762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212295|gb|ACY35764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212313|gb|ACY35773.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212317|gb|ACY35775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212319|gb|ACY35776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212321|gb|ACY35777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212323|gb|ACY35778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212329|gb|ACY35781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212345|gb|ACY35789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212375|gb|ACY35804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212407|gb|ACY35820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342157|gb|ACY54589.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342173|gb|ACY54597.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342175|gb|ACY54598.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342187|gb|ACY54604.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342191|gb|ACY54606.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212215|gb|ACY35724.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212203|gb|ACY35718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 14  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 70

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 71  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 124

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 125 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 168


>gi|229472407|gb|ACQ72718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFIPTPGQIMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342261|gb|ACY54641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 10  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 68

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 69  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 120

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 168


>gi|262342257|gb|ACY54639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHRALNYCLQGNSAILAKRWM 169


>gi|269794009|ref|YP_003313464.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
 gi|269096194|gb|ACZ20630.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
          Length = 568

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 87/289 (30%), Gaps = 64/289 (22%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT------- 228
           RL  L   E    L+   +   G   D+    ++   +   R  L      L        
Sbjct: 163 RLWLLLAAESAGALIAAEMTVAGVPWDVVEHDRILTDLLGPRPALGYRPALLEAKAAQVS 222

Query: 229 ---DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +        LR       G+         L+  + H  I  L +   ++RL ++
Sbjct: 223 AALGVEVNLDSPVELLRSMRSA--GLPATSTRSWELQQ-IDHPAIAPLLEYKKMSRLMTA 279

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 L+T      +DGR R      G   TGRW+        LP Q            
Sbjct: 280 N-GWHWLDTWV----ADGRFRPVYVPGGVV-TGRWASDGGGALQLPHQ------------ 321

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +RS + +  G  LVVAD A +E R+LA ++G+    +A    
Sbjct: 322 ------------------IRSAVRSDPGWSLVVADAAQLEPRILAAMSGDAAMAEAGRA- 362

Query: 406 EDIYV---TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            D+Y     T A            E R   K   L   Y G       M
Sbjct: 363 ADMYEGMVATGAV-----------ETRQQAKFGMLGAMYGGTQGESGRM 400


>gi|262212057|gb|ACY35645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212063|gb|ACY35648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212099|gb|ACY35666.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212105|gb|ACY35669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472297|gb|ACQ72663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 47/164 (28%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDSGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAEAIICKLW 167


>gi|229472309|gb|ACQ72669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGRIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|291335807|gb|ADD95407.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C849]
          Length = 124

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS G  +V ADLAGIE R+LA   G  +  +        DI+     K       
Sbjct: 11  RELFTASPGMTMVGADLAGIELRMLAHYLGRYDGGRYADILLNGDIHQVNADKI-GIS-- 67

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
                 R   K +  A  Y  G
Sbjct: 68  ------RRQVKTVSYAYLYGAG 83


>gi|262342153|gb|ACY54587.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST-----STFEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++       S F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKVMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212273|gb|ACY35753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST-----STFEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++       S F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKVMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212155|gb|ACY35694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHRALNYCLQGNSAILAKRWM 169


>gi|229472197|gb|ACQ72613.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472287|gb|ACQ72658.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472311|gb|ACQ72670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472417|gb|ACQ72723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFIPTPGQIMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342237|gb|ACY54629.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 12  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 70

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 71  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 122

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 123 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 170


>gi|229472475|gb|ACQ72752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
                 R   K +  A  Y   
Sbjct: 70  ------RRAVKTVTYAFLYGAS 85


>gi|229472279|gb|ACQ72654.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRGLFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSRAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212097|gb|ACY35665.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212109|gb|ACY35671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212119|gb|ACY35676.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212129|gb|ACY35681.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472449|gb|ACQ72739.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472451|gb|ACQ72740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472479|gb|ACQ72754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
                 R   K +  A  Y   
Sbjct: 70  ------RRAVKTVTYAFLYGAS 85


>gi|262212249|gb|ACY35741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAESGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212095|gb|ACY35664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212193|gb|ACY35713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 4   RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 62

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 63  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 114

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 115 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 162


>gi|262212173|gb|ACY35703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342189|gb|ACY54605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D + 
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLDA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 104/352 (29%), Gaps = 98/352 (27%)

Query: 150 ANHVQAWQLFGE----YCKRDVEATRELFKRLI-------PLSDGERDLWLLDQTINDRG 198
            N    W  +      YC +D + T  L++ L             E D+ +L       G
Sbjct: 51  KNDSNDWSTYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASG 110

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKL--------------------------TDGII 232
           +R D+D  ++++  +  E   + + I  +                          T    
Sbjct: 111 FRFDMDAAVRVRATLQDEFDSITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTD 170

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL------------- 279
            +      +   L    G     ++E     +   + ++++ +D+ L             
Sbjct: 171 FNPTSRQNIAWALQTFRGARFTKVTETGKPKV-DEATLSEV-RDIALSAGNQQLHDECEM 228

Query: 280 -NRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             RL +    + +L    N+   ++  DG +  +     +++TGR +             
Sbjct: 229 FIRLLTLQKWLGQLSEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNL------- 279

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI-- 392
                          G+ ++ P        R   +   G  +V ADL G+E R+L     
Sbjct: 280 ---------------GQVVSAPWA------RELFVPHPGHVMVGADLEGLELRLLGHYLA 318

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           A +           DI+     +             R   K +  A  Y  G
Sbjct: 319 AFDQGSFAEVVVNGDIHQQNADRV-GCT--------RTQVKTLTYAFIYGAG 361


>gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 56/158 (35%), Gaps = 12/158 (7%)

Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  +LFG++ ++         D+    E  ++    +D E  L  +   +  
Sbjct: 84  KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEPTLSRVLAEMEI 143

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G  ++   +  +    +Q  K L+E I     G+  +      L   LF    + ++  
Sbjct: 144 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 202

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++    + +    + +L     + +         KLN+
Sbjct: 203 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNS 238


>gi|262342183|gb|ACY54602.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST-----STFEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++       S+F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSSFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNRAALNYLLQSAGAIICKLW 167


>gi|262212389|gb|ACY35811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342251|gb|ACY54636.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 29/166 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FANGEDIYVTTYAKAFNTPID 422
           R   I + G+ +V ADLAGIE R+L+  +A  D    A      DI+     K       
Sbjct: 13  RELFIPTPGQVMVGADLAGIELRMLSHSLARYDNGRYADILLNGDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                       Q + + +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 473 EDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
            +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 124 LEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472383|gb|ACQ72706.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 30/176 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K       
Sbjct: 13  RKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQENADKV-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                +      Q +   +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 473 EDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +  + ++             +    P  A+      +A  + K+      + + Q
Sbjct: 124 VEAVKCKARQYSYINAIDGRRIACDGPHKALNYLPQSSAGVIAKRWMLLTDESLRQ 179


>gi|262212269|gb|ACY35751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AMQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|229472455|gb|ACQ72742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R   I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
                 R   K +  A  Y   
Sbjct: 70  ------RRAVKTVTYAFLYGAS 85


>gi|262212211|gb|ACY35722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 20/166 (12%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S     V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSGNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGG-------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                 R  GK +   L Y GG       A   K+ AS  G +++   + ++  S F D 
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRG--KIIQGLSGFADL 121

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             A                  +L G     +    ++    + +LW
Sbjct: 122 NAAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212079|gb|ACY35656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212083|gb|ACY35658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 30/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  ++ + W
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILARRW 168


>gi|262212189|gb|ACY35711.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342241|gb|ACY54631.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDELD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|148807562|gb|ABR13583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   ++ +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKT 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G      ++ TGR +        +P    
Sbjct: 93  IYEYLMLQKRAAQIDSWLTHEK----DGRVHGR-VITNSAVTGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           +++ P G      RS      G KLV  D +G+E R+LA    +
Sbjct: 144 ----------------SVSAPYGKEC---RSFWCVPEGHKLVGIDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|262212219|gb|ACY35726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 53/164 (32%), Gaps = 29/164 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FANGEDIYVTTYAKAFNTPID 422
           R   I + G+ +V ADLAGIE R+L+  +A  D    A      DI+     K       
Sbjct: 13  RELFIPTPGQVMVGADLAGIELRMLSHSLARYDNGRYADILLNGDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                       Q + + +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 473 EDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKK 508
            +  +  S   +++           P  A+   L G +  L K+
Sbjct: 124 LEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKR 167


>gi|262212069|gb|ACY35651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
            + V        K +  A  Y  G +                       Q + + +    
Sbjct: 70  RELV--------KTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472571|gb|ACQ72800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 7   RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI-GIS-- 63

Query: 423 KVSKEQRAIGKVMELALGYQGG 444
                 R   K +  A  Y   
Sbjct: 64  ------RRAVKTVTYAFLYGAS 79


>gi|262342177|gb|ACY54599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 14  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 70

Query: 423 KVSKEQRAIGKVMELALGYQGG-------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                 R  GK +   L Y GG       A   ++ AS  G +++   + ++  S F D 
Sbjct: 71  ------RKSGKGVTYCLIYGGGNHKLGLTAGASRSSASRKGQEIRG--KIMQGLSGFADL 122

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             A                  +L G     +    ++    + +LW
Sbjct: 123 NAAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 168


>gi|148807528|gb|ABR13567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   +I +   
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKRIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKT 92

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                 L    + I    T  +    DGR+ G +   GA  TGR +        +P    
Sbjct: 93  TYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           +++ P G      RS      G KL+  D +G+E R+LA    +
Sbjct: 144 ----------------SVSAPYGKEC---RSFWCVPEGHKLIGCDASGLELRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|262342197|gb|ACY54609.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 47/164 (28%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWI--AGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRHDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342233|gb|ACY54627.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 167

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 29/166 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKK 508
              +  +  S   +++           P  A+   L G +  L K+
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKR 167


>gi|262212207|gb|ACY35720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342263|gb|ACY54642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEVRQAYIEAIDVLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
                 +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLGAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342103|gb|ACY54562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342129|gb|ACY54575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 55/177 (31%), Gaps = 32/177 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R    AS+G   V ADLAGIE R+ A  +A  D         NG DI+     K      
Sbjct: 13  RKLFTASSGYVTVGADLAGIELRMPAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K            K   +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQK 122

Query: 472 FEDWEQAESHH---------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
             +  + ++             +    P  A+   L  +A  + K+      + + Q
Sbjct: 123 LVEAVKCKARQYNYINAIDGRRIACDGPHKALNYLLQSSAGVIAKRWMLLTDESLRQ 179


>gi|262342149|gb|ACY54585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 29/164 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R   I +   KLV +DLAGIE R+ A      +  +       +DI+     K       
Sbjct: 13  RELFITNPTWKLVDSDLAGIELRLFAHYLARYDGGRYAKILLEQDIHQVNAEKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKSTSTF 472
                 R   K +     Y GG +              A   G ++++ +   +      
Sbjct: 70  ------RRQVKTITYCFLYGGGDQKLGLSFDNMLPLDKAKKKGAEIRRAYMDAIPGLEDL 123

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDK--------LIGTACELVKK 508
               +  +    ++       + DK        L G+A  + K+
Sbjct: 124 VKDTRRVAERGSIRAIDKRQIIVDKEHKALNCLLQGSAAVVAKR 167


>gi|262212297|gb|ACY35765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q V+         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEVRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212153|gb|ACY35693.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212177|gb|ACY35705.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 26/172 (15%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGPD 121

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
              +  +  S   +++       + D    +  + +       +  +L  W 
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVD----SPHKALNYC-LQGNSAILAKWW 168


>gi|262212255|gb|ACY35744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGGPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212113|gb|ACY35673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEVRQAYIEAIDVLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
                 +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLGAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|148807579|gb|ABR13590.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAEMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+  R+LA    ++ 
Sbjct: 166 IGCDASGLXLRMLAHYMRDER 186


>gi|262212157|gb|ACY35695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+  +A  D    A      DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGCYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEVRQAYIEAIDVLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
                 +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLGAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472535|gb|ACQ72782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFN 418
            D  R    A+ G  +V ADLAGIE R+LA      +  +        DI+     K   
Sbjct: 9   GDEFRKLFRATPGMVMVGADLAGIELRMLAHYLARWDGGRYGDVLINGDIHQENADKI-G 67

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQF-SQNVKS 468
                     R + K +  A  Y  G +              A   G +++Q     +  
Sbjct: 68  IS--------RRLVKTVTYAFLYGAGDQKIGLSYDQSLSADKAKKKGQEIRQAHMDAIPG 119

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKD-------KLIGTACELVKKAWRA-KHQGVLQ 519
                +  +  ++  +++         D        L+ ++  ++ K W A  H+ +++
Sbjct: 120 LQDLVEATKKAANRGYIRAIDGRHISVDSPHKSLNYLLQSSAGVIAKRWLALTHEAIIR 178


>gi|262212123|gb|ACY35678.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
            + V        K +  A  Y  G +                       Q + + +    
Sbjct: 70  RELV--------KTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQ--------DQYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIADSPHKALNYCLQGNSAILAKRWM 169


>gi|262212293|gb|ACY35763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+             
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA--------- 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
           ++ +  R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 64  EIYRTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|302497375|ref|XP_003010688.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
 gi|291174231|gb|EFE30048.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
          Length = 1138

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 51/241 (21%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           A+D I +++      + K  TL + +S D ++                     PQ +P  
Sbjct: 636 ARDRITSQMVVYKKDLEKTGTLGKGLSLDSKV-----------------GFILPQVIPMG 678

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
             +   +  T                    +++ + A  G   V AD+   E  + A + 
Sbjct: 679 TITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLV 732

Query: 394 GEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
           G+                    A G D++  T  K             R   KV      
Sbjct: 733 GDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNAKVFNYGRI 783

Query: 441 YQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           Y  G K   T+       + +       ++  K T       +  S + +++     F  
Sbjct: 784 YGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVF 843

Query: 495 K 495
            
Sbjct: 844 N 844


>gi|262212393|gb|ACY35813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 28/171 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A+ G+ +V ADL+GIE R+L+  +A  D          DI+     K        
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKI-GIT--- 68

Query: 424 VSKEQRAIGKVMELA---------LGYQGGAKVFKTMASHCGLDLQQFS-QNVKSTSTFE 473
                R + K +  A         +GY     +    A   G ++++   + +   S   
Sbjct: 69  -----RKLVKTVTYAFLCGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSDLL 123

Query: 474 DWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQG 516
              ++ ++  +++           P  A+   L G+A  + K+     +  
Sbjct: 124 SAVKSAANRGFVKGIDGRKILVDSPHKALNYLLQGSAGVVAKRWMVIANDN 174


>gi|262342161|gb|ACY54591.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S     V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSGNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK     L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGATYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212339|gb|ACY35786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 27/173 (15%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++   T     F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKITQGLSGFADLNA 123

Query: 478 AESHHLW-----------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           A                 ++ Q    A  + L+ +A  ++ K W  +   +LQ
Sbjct: 124 AIQERAKSGVLKGLDDRPIRLQGKNHAALNYLLQSAGAIICKLWVIRTHELLQ 176


>gi|262342201|gb|ACY54611.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYPLQSAGAIICKLW 167


>gi|262342207|gb|ACY54614.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+     G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCQQGNSAILAKRWM 169


>gi|148807541|gb|ABR13573.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807546|gb|ABR13575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 13  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEYNVGSRKQIAERLEGVGVKFKLQTEKG 72

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 73  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 127

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +                               +A          RS      G KL
Sbjct: 128 TGRMTHHSPNL-----------------------AQVASVSAPYGRECRSFWCVPEGHKL 164

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 165 IGCDASGLELRMLAHYMRDER 185


>gi|229472175|gb|ACQ72602.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472207|gb|ACQ72618.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 30/178 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S G+ +V ADLAGIE R+L+      +  +        DI+     K    
Sbjct: 10  SRFRELFLPSPGQIMVGADLAGIELRMLSHFLAKYDQGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKST 469
                    R + K +  A  Y  G +              A   G +++  +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKEIRTAYVDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               D  +  S   +++           P  A+   L G +  ++ K W   +Q  L+
Sbjct: 121 DKLLDAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSA-ILAKRWMLINQNNLK 177


>gi|229472537|gb|ACQ72783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+ + AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALLTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G K                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGNKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|148807504|gb|ABR13556.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVADLAGIEARVLAWIAGEDW 397
           +  D +G+E R+LA    ++ 
Sbjct: 166 IGCDASGLELRMLARYMRDER 186


>gi|262212125|gb|ACY35679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+     G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCQQGNSAILAKRWM 169


>gi|148807513|gb|ABR13560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 34/182 (18%)

Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTL----KSILSHSNITQLAK 275
           ++   +L D +   +      +   L    G+     +E       + +L   +I     
Sbjct: 34  EKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPG--A 90

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            LI   L     A  ++++    V  DGR+ G +   GA  TGR +        +P    
Sbjct: 91  KLIYEYLMLQKRA-AQIDSWLTHV-KDGRVHGRVITNGAV-TGRMTHHSPNLAQVP---- 143

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        RS      G KL+  D +G++ R+LA    +
Sbjct: 144 -------------------SVSAPYGRECRSFWCVPEGHKLIGCDASGLKLRMLAHYMRD 184

Query: 396 DW 397
           + 
Sbjct: 185 ER 186


>gi|262342179|gb|ACY54600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 27/173 (15%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLW-----------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           A                 ++ Q    A  + L+ +A  ++ K W  +   +LQ
Sbjct: 124 AIQERAKSGALKGLDGRPIRLQSKNHAALNYLLQSAGAIICKLWVIRTHELLQ 176


>gi|297463314|ref|XP_002702642.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|297487953|ref|XP_002696610.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|296475559|gb|DAA17674.1| polymerase (DNA directed), gamma [Bos taurus]
          Length = 1223

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 107/362 (29%), Gaps = 61/362 (16%)

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR+   + Q         +  I  + ++      + A P  + S+ +++ + A  G  LV
Sbjct: 819  GRYGAILPQVV------TAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLV 871

Query: 378  VADLAGIEARVL-----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKV 424
             AD+   E  +      A  AG        W         G D++  T A          
Sbjct: 872  GADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS---- 926

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                R   K++     Y  G               ++         T ++  +       
Sbjct: 927  ----REHAKIINYGRIYGAG-----------QPFAERLLMQFNHRLTRQEAAEKAQQMYA 971

Query: 485  MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +      + + D+      EL     R +       W  L +      +       ++  
Sbjct: 972  VTKGLRRYRLSDEGEWLVKELDLPVERTEDG-----WVSLKDLRKIQREASKKSRWKKWE 1026

Query: 545  NVP-RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL---TEN 600
             V  R  M   + ++   L S   +  SD+          +  L      G  +      
Sbjct: 1027 VVAQRAWMGGTESEMFNKLES---IATSDIPRTPVLGCRISRALEPCAVRGEFMTSRVNW 1083

Query: 601  IVQAISRDILCEGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLM 651
            +VQ+ + D L   +         + I     +++HDE+   V E           + +L+
Sbjct: 1084 VVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLL 1143

Query: 652  TK 653
            T+
Sbjct: 1144 TR 1145


>gi|262342115|gb|ACY54568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +A+ G+ +V ADL+GIE R+L+  +A  D          D++        NT    
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDVHQL------NTDKIG 66

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK---------TMASHCGLDLQQFS-QNVKSTSTFE 473
           ++   R + K +  A  Y  G +              A   G ++++   + +   S   
Sbjct: 67  IT---RKLVKTVTYAFLYGAGNEKIGYSYDRLLSSQKAKAKGREIKEAFIEAIPGLSDLL 123

Query: 474 DWEQAESHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQG 516
              ++ ++  +++           P  A+   L G+A  + K+     +  
Sbjct: 124 SAVKSAANRGFVKGIDGRKILVDSPHKALNYLLQGSAGVVAKRWMVIANDN 174


>gi|262212301|gb|ACY35767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RILVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342205|gb|ACY54613.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 21/146 (14%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      +D +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFK----------TMASHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHGYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKD 496
              +  +  S   +++       + D
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVD 147


>gi|229472361|gb|ACQ72695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPI 421
           R+ + AS G  +V ADLAGIE R+LA  +A  D         NG DI+     K      
Sbjct: 13  RALLTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTST 471
                  R + K +  A  Y  G +                +      Q +   +     
Sbjct: 70  -------RRLVKTVTYAFLYGAGDEKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 472 FEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++++   ++Q              A+   L G+A  + K      H  +
Sbjct: 123 LVTAVRSKAESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHDVI 176


>gi|262212327|gb|ACY35780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 27/173 (15%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLW-----------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           A                 ++ Q    A  + L+ +A  ++ K W  +   +LQ
Sbjct: 124 AIQERAKSGVLKGLDDRPIRLQGKNHAALNYLLQSAGAIICKLWVIRTHELLQ 176


>gi|262212353|gb|ACY35793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFN 418
               R    A+ G+ +V ADL+GIE R+LA      +  +        DI+     K   
Sbjct: 9   GPEFRRLFTATPGQVMVGADLSGIELRMLAHYLARYDGGRYADILLNGDIHQVNADKI-G 67

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG 444
                     R + K +  A  Y  G
Sbjct: 68  IT--------RKLVKNVTYAFLYGAG 85


>gi|262212341|gb|ACY35787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+             
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA--------- 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
           ++    R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 64  EIYATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLEGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212331|gb|ACY35782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+             
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA--------- 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
           ++    R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 64  EIYATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLEGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212275|gb|ACY35754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R LA  ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLAHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  G+ +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGRGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|322796178|gb|EFZ18754.1| hypothetical protein SINV_08354 [Solenopsis invicta]
          Length = 1253

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 104/346 (30%), Gaps = 59/346 (17%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +P+   S  +  + ++      + A    + S+ +R  I A  G  +V AD+   E  + 
Sbjct: 856  IPQVVVSGTLTRRAVEPTWMTASNAHVERIGSE-LRCMIQAPPGYNIVGADVDSQELWIA 914

Query: 390  -----AWIAGEDW--------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A                I   +NG D++  T                R   KV+ 
Sbjct: 915  SVIGDAHYKRIHGATPFGWMTLIGTKSNGTDMHSVTAKAI-GIS--------RDHAKVIN 965

Query: 437  LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             A  Y  G K  + +       +       KS   F   +  + + L  +    +     
Sbjct: 966  YARIYGAGQKFAERLLKQFNPSMTDAEAISKSRKMFALTKGKKIYRLKTEFINDDL-QNI 1024

Query: 497  KLIGTACELVKKAWRAKHQGVLQL--WKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
                +    + K      Q + Q   W D +E       E  + S   +           
Sbjct: 1025 SYTSSQAYHIAKLHGKGLQDIFQKSEWIDGSESAMFNRLEQIAGSEHPITP--------- 1075

Query: 555  KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILC 611
                 +    SR L  ++   D  +L                    +VQ+ + D   ++ 
Sbjct: 1076 ----FLNARLSRALEITNTDDDDKFL--------------PTKINWVVQSGAVDFLHLML 1117

Query: 612  EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG---TLCSLMTKN 654
              M+   K+     L+ HDE+    P    ++      + +LMT+ 
Sbjct: 1118 VSMRWLMKDNARFCLSFHDEVRYLVPSRYKYNAALAMHVTNLMTRA 1163


>gi|262212325|gb|ACY35779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      D++     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDVHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|229472323|gb|ACQ72676.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFAN-GEDIYVTTYAKAFNTPID 422
           R     S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RPLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|330883874|gb|EGH18023.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 108

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   I  +G  +D +L+      +  +   L+ +   +      +      L
Sbjct: 1   DIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQL 59

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
            + L+   G+ ++  +     S           +  +   +   GS+
Sbjct: 60  GVILYEKLGMPILSKTATGQASTAEAVLALSWERPHLAPLMLKPGSS 106


>gi|262342227|gb|ACY54624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
            +R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RLRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYAVILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + + +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVRTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1]
 gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1]
          Length = 703

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 67/271 (24%), Gaps = 46/271 (16%)

Query: 234 SSRQTYALRMYLFLITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
           +      +++ L     +        +  +   +         +      L      I K
Sbjct: 328 NPSSRDHIQLKLQEAGWVPTEFTPTGQPVVDDTVLEHVKVDDPEKQASIDLIKDYLLIQK 387

Query: 292 --------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                          V  DGR+ G++   GA  TGR +        +P          + 
Sbjct: 388 RIGQAAEGDKAWLRYVEEDGRMHGSVNPNGAV-TGRATHSFPNVAQVPS---VRAPYGEE 443

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAF 402
            +     E    P G     V++ I           D +G+E R LA  +A  D    A 
Sbjct: 444 CRKAFGAEHNRKPDGTKDPWVQAGI-----------DASGLELRCLAHFMARFDNGEYAH 492

Query: 403 A-NGEDIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------AKVFKTMA 452
                DI+      A+             R   K       Y  G           K   
Sbjct: 493 EILNGDIHTKNQNAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERG 542

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
                   + +  + +     +    +S   
Sbjct: 543 KELKAKFLENTPAIAALRESIEQTLVKSSKW 573


>gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2]
 gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2]
          Length = 704

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 89/352 (25%), Gaps = 71/352 (20%)

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
             L+      R  ++       + +         ++  L     +      +G    ++ 
Sbjct: 308 EGLEPCDLDTRDYMEGAPYTPVEFVTFKPSSRDHIQKKLQEAGWVPEKFTEKG--APVVD 365

Query: 267 HSNITQLAKDLILNR----LASSGSAILK--------LNTLSEAVSSDGRLRGTLQFYGA 314
              +  +  D    +    L      I K               V  DG++ G +   GA
Sbjct: 366 DEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNPNGA 425

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR +        +P          Q   A      +               I     
Sbjct: 426 V-TGRATHSFPNLAQVP--GVRSPYGEQCRSAFGAEHHLDG-------------ITGKPW 469

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGE--------DIYV--TTYAKAFNTPIDKV 424
                D +G+E R LA        +  F NGE        DI+      A+         
Sbjct: 470 VQAGIDASGLELRCLAHF------MARFDNGEYANEILNGDIHTKNQNAAEL-------- 515

Query: 425 SKEQRAIGKVMELALGYQGG---AKVFKTMASHCGLDL-QQFSQNVKSTSTFED------ 474
               R   K       Y  G              G +L ++F +N  + +   +      
Sbjct: 516 --PTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSL 573

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                W  AE    W +        +   + +    +    ++    + +LW
Sbjct: 574 VKSSAWIGAEQKVQWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLW 625


>gi|29366719|ref|NP_813764.1| putative DNA polymerase [Pseudomonas phage gh-1]
 gi|29243578|gb|AAO73157.1|AF493143_18 putative DNA polymerase [Pseudomonas phage gh-1]
          Length = 709

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 105/369 (28%), Gaps = 46/369 (12%)

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLK 262
           V         +R+          + +  +      +   L            + +     
Sbjct: 295 VYNANGKTKDKRETFAGAPYTPVEFVTFNPTSRPHIIKMLKKAGWEPSEFTDNGAPKVDD 354

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +L H  +    K   +  +      + +  N   + V  DG + G++   GA  TGR +
Sbjct: 355 EVLEHVRVDDPEKQAAIELIQKRIGMLAEGDNAWIKLVGEDGAMHGSINPNGAG-TGRAT 413

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                   +P    +     + +      +       +                 V  D 
Sbjct: 414 HAYPNMGQVPSASATYGPHCRALFGATHAKKRRGWEKVVQ---------------VGTDA 458

Query: 382 AGIEARVLAWIAG--EDWKIKAFANGEDIY---VTTYAKAFNTPIDKVSKEQ---RAIGK 433
           +G+E R L       ++ +        DI+               DK ++E    R I K
Sbjct: 459 SGLELRCLGHYGAPFDEGRYADTVLNGDIHWVNGKAAGIIKFDERDKHNEEHERVRGIAK 518

Query: 434 VMELALGYQGGAKVFKTMA----SHCGLDLQQFSQNVKSTSTFED--WEQAESHHLWMQD 487
               A  Y  G ++  +             + F +N  + S  +    +Q  +   W Q 
Sbjct: 519 TFIYAFLYGAGDELVGSFVGGGKKEGKALKKDFMENTPAISGLQGAIADQLITEQKWNQA 578

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR-VANV 546
               F +K           K+ W     G     +        ++Q  G+I  ++ V  V
Sbjct: 579 T-RRFDIK----------WKRRWLRGLDGRKIHVRSPHSALNFLLQSAGAIICKKWVVEV 627

Query: 547 PRLVMRRHK 555
            R++M  H 
Sbjct: 628 ERILMEEHG 636


>gi|262212131|gb|ACY35682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYGKPLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAVKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212197|gb|ACY35715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  +  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLFGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLPEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212235|gb|ACY35734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +     Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYEFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212283|gb|ACY35758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKPGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKPGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342113|gb|ACY54567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 11/85 (12%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   I S G  +  ADL+GIE R+L+      +  +        DI+     K    
Sbjct: 10  GRFRELFIPSKGLVMCGADLSGIELRMLSHYLARFDGGRYAEILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGG 444
                    R   K +  A  Y  G
Sbjct: 69  S--------RKQVKTVTYAFLYGAG 85


>gi|262212311|gb|ACY35772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFAN-GEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRRLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262212065|gb|ACY35649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212229|gb|ACY35731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAVKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212111|gb|ACY35672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342243|gb|ACY54632.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAVKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 815

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/385 (15%), Positives = 118/385 (30%), Gaps = 83/385 (21%)

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +   V  +  +  TL     + T R S      QN+P+ ++S        +A    E+
Sbjct: 439 KGMLTLVHPNDIVHHTLNMC-RTVTARLSSSDPNLQNIPKGQKS--------EAKTMFES 489

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT- 411
                G                K++ +D + +E  V A +      I   A G D++   
Sbjct: 490 RFGADG----------------KIIQSDFSSLEVYVQAMLTLCKQLIADLAAGIDMHCMR 533

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             A           KE+R   +V+ L               +    D   + +    + +
Sbjct: 534 LAA-----------KEKREYDEVLML-----CKKGKVGVDLTQEERDEWDYKRTGAKSFS 577

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
           F+    A    +      P   V         + +  A  A++  + + +    E  A  
Sbjct: 578 FQRAYGAGVAAIAAGTGIPLEEV---------QALADAEDARYPEIGEYF----EMKADE 624

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM--- 588
           ++E  + +   V +          + +   L     +     +   SY  + + + M   
Sbjct: 625 IRETRTPTLDIVEHPEI-------KGLKCQLGKGYSVTPDGKR--YSYRESPSPKYMIER 675

Query: 589 -RERT-YGGKLTENI-VQAISRDILCEGMKNATKNGYD---------IVLTVHDEIVSET 636
            R RT +     +N  VQ    +++   M  A +  Y          +V TVHD    + 
Sbjct: 676 GRPRTGFVPTQIKNYEVQGTGGEVMKAAMWLAVRAFYYYKNFKGLALLVNTVHDAQYVDA 735

Query: 637 PDTPYFSVGTLC-SLM---TKNPSW 657
             T       L  + M   +    W
Sbjct: 736 HKTVAVKAAGLLHACMVEASTLIEW 760


>gi|29838472|gb|AAO93094.1| DNA polymerase [Bacillus phage Bastille]
          Length = 279

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 48/235 (20%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E +L    +   D  Y + ++ +LK  +   +E  KL   +    +    +   +   +
Sbjct: 63  REFNLIKQVEEEKDALYALAVEEMLKAPKDRDKEILKLRNKLKD-EEDRFFNPNSSEDKQ 121

Query: 243 MYLFLITGIDLV----DMSEGTLKSILSHSNIT----------------------QLAKD 276
             ++ + GI L      + +  +++ L    I                       +LA  
Sbjct: 122 KAMYKLGGIVLPFNREYLVDSAVENNLEEHEIEWYHYKADKHAFEYISENYPEHKELADL 181

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            +   L  +         L+  V     L G+    G + T R S      QNLPR    
Sbjct: 182 FLEFSLVKTRKQSFTYKFLT-MVDHHDILHGSFNSEG-TETSRLSSAAPNLQNLPR---- 235

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
                        G+            ++   +    G  L+  D + +E+RV+A
Sbjct: 236 -----------KTGDVFRFDYQHP---IKRAFVTRFEGGALIQLDYSSLESRVMA 276


>gi|332029311|gb|EGI69294.1| DNA polymerase subunit gamma-1, mitochondrial [Acromyrmex echinatior]
          Length = 1247

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 106/348 (30%), Gaps = 65/348 (18%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +P+   S  +  + ++      + A    + S+ +R  + A  G  +V AD+   E  + 
Sbjct: 859  IPQVVVSGTLTRRAVEPTWMTASNAHVERIGSE-LRCMVQAPPGYNIVGADVDSQELWIA 917

Query: 390  -----AWIAGEDW--------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A                I   +NG D++  T                R   KV+ 
Sbjct: 918  SIIGDAHYKRVHGATPFGWMTLIGTKSNGTDMHSVTAKAI-GIS--------RDHAKVIN 968

Query: 437  LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             A  Y  G K  + +       +       KS   F+  +       W++ ++    V D
Sbjct: 969  YARIYGAGQKFAQRLLKQFNPSMTDAEATSKSRKMFDLTKG--KKVFWLKPEF----VND 1022

Query: 497  KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
             L   A                      ++ +      G ++   +   +    M   + 
Sbjct: 1023 DLQDIA-------------------YTSSQAYKIAKLHGKAL---QDIFLKSEWMGGSES 1060

Query: 557  DVHIVLPSSRRLVYS-----DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD--- 608
             +   L       Y      D +   +   T T     +  +       +VQ+ + D   
Sbjct: 1061 AMFNRLEQIAGSEYPVTPFLDARLSRALEITNT---DDDDKFLPTKINWVVQSGAVDFLH 1117

Query: 609  ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG---TLCSLMTK 653
            ++   M+   ++     L+ HDE+    P    ++      + +LMT+
Sbjct: 1118 LMLVSMRWLMRDNARFCLSFHDEVRYLIPFKYKYNAALAMHVTNLMTR 1165


>gi|262212281|gb|ACY35757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 50/166 (30%), Gaps = 20/166 (12%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFAN---GEDIYVTTYAKAFNTP 420
           RS    S+    V +D +G+E R L   ++  D     FA      DI+     + + T 
Sbjct: 13  RSLFKPSDNHLQVGSDASGLEPRCLGHYLSRYDG--SKFAEEVVNGDIHTALA-EIYGTD 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDW 475
                   R  GK +   L Y GG       A        +  Q ++         F D 
Sbjct: 70  --------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADL 121

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
             A                  +L G     +    ++    + +LW
Sbjct: 122 NAAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342151|gb|ACY54586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 29/166 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTNAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKK 508
              +  +  S   +++           P  A+   L G +  L K+
Sbjct: 122 KLLEVIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKR 167


>gi|262212365|gb|ACY35799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 29/166 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----------SHCGLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTNAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKK 508
              +  +  S   +++           P  A+   L G +  L K+
Sbjct: 122 KLLEVIRKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKR 167


>gi|262212171|gb|ACY35702.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + + +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVETVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|147904034|ref|NP_001081464.1| DNA polymerase subunit gamma-1 [Xenopus laevis]
 gi|2494179|sp|Q91684|DPOG1_XENLA RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1229142|gb|AAB17117.1| DNA polymerase gamma [Xenopus laevis]
          Length = 1200

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 86/296 (29%), Gaps = 48/296 (16%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDW--------KIKAFAN 404
                  +++ +    G  L+ AD+   E  + A       AG                ++
Sbjct: 838  DRVGSELKAMVQVPPGYHLIGADVDSQELWIAAILGEAHFAGIHGCTAFGWMTLQGKKSS 897

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T +              R   KV      Y  G               ++   
Sbjct: 898  GTDLHSKTASTV-GIS--------REHAKVFNYGRIYGAG-----------QPFAERLLM 937

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR-AKHQGVLQLWKD 523
                  T E   +       +      + +  +      EL     R  ++   LQ  + 
Sbjct: 938  QFNHRLTQEQAAEKAKQMYAVTKGIRRYILSKEGEWLVEELGISVERGEENSVNLQDLRK 997

Query: 524  LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
            + +      +   ++ +RR+        +   +   I +  S +      +   +   TA
Sbjct: 998  IQKDATKRSRRKWNLVSRRI-WTGGTESQMFNKLETIAMSPSPKTPVLGCRISRALEPTA 1056

Query: 584  TSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDI----VLTVHDEI 632
                     +       +VQ+ + D   ++   MK   +  YDI     +++HDE+
Sbjct: 1057 VKG-----EFITSRVNWVVQSSAVDYLHLMLVAMKWLFEA-YDIDGRFCISIHDEV 1106


>gi|262212333|gb|ACY35783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFILTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472555|gb|ACQ72792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 30/178 (16%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S G+ +V ADLAGIE R+L       +D +        DI+     K    
Sbjct: 10  PRFRELFLPSPGQVMVGADLAGIEFRMLTHFLARYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                         +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIRGAYIDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               +  +  S   +++           P  A+   L G +  ++ K W   +Q  ++
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIMVDSPHKALNYCLQGNSA-ILAKRWMVINQHNMK 177


>gi|262212201|gb|ACY35717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKSTS 470
                   R + K +  A  Y  G +              A   G +++Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGAGDEKIGHSHDKPLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAVKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|9634019|ref|NP_052093.1| DNA polymerase [Yersinia phage phiYeO3-12]
 gi|6599010|emb|CAB63614.1| DNA polymerase [Yersinia phage phiYeO3-12]
          Length = 704

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 88/352 (25%), Gaps = 71/352 (20%)

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
             L+      R  ++       + +         ++  L     +      +G    ++ 
Sbjct: 308 EGLEPCDLDTRDYMEGAPYTPVEFVTFKPSSRDHIQKKLQEAGWVPEKFTEKG--APVVD 365

Query: 267 HSNITQLAKDLILNR----LASSGSAILK--------LNTLSEAVSSDGRLRGTLQFYGA 314
              +  +  D    +    L      I K               V  DG++ G +   GA
Sbjct: 366 DEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNPNGA 425

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR +        +P          Q   A      +               I     
Sbjct: 426 V-TGRATHSFPNLAQVP--GVRSPYGEQCRSAFGAEHHLDG-------------ITGKPW 469

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGE--------DIYV--TTYAKAFNTPIDKV 424
                D +G+E R LA        +  F NGE        DI+      A+         
Sbjct: 470 VQAGIDASGLELRCLAHF------MARFDNGEYANEILNGDIHTKNQNAAEL-------- 515

Query: 425 SKEQRAIGKVMELALGYQGG---AKVFKTMASHCGLDL-QQFSQNVKSTSTFED------ 474
               R   K       Y  G              G +L ++F +N  + +   +      
Sbjct: 516 --PTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSL 573

Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                W   E    W +        +   + +    +    ++    + +LW
Sbjct: 574 VNSSAWIGGEQKVQWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLW 625


>gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 104/352 (29%), Gaps = 98/352 (27%)

Query: 150 ANHVQAWQLFGE----YCKRDVEATRELFKRLI-------PLSDGERDLWLLDQTINDRG 198
            N    W  +      YC +D + T  L++ L             E D+ +L       G
Sbjct: 51  KNDSNDWSTYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASG 110

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKL--------------------------TDGII 232
           +R D+D  ++++  +  E   +   I ++                          T    
Sbjct: 111 FRFDMDAAVRVRAQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTD 170

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL------------- 279
            +      +   L    G     ++E     +   + ++++ +D+ L             
Sbjct: 171 FNPTSRQNIAWALQTFRGARFTRVTETGKPKV-DEATLSEV-RDIALSAGNQQLHDECEM 228

Query: 280 -NRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             RL +    + +L    N+   ++  DG +  +     +++TGR +             
Sbjct: 229 FIRLLTLQKWLGQLSEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNL------- 279

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI-- 392
                          G+ ++ P        R   +   G  +V ADL G+E R+L     
Sbjct: 280 ---------------GQVVSAPWA------RELFVPHPGHIMVGADLEGLELRLLGHYLA 318

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           A +           DI+     +             R   K +  A  Y  G
Sbjct: 319 AFDSGSFAEVVVNGDIHQQNADRV-GCT--------RTQVKTLTYAFIYGAG 361


>gi|229472195|gb|ACQ72612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYGKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|255595591|ref|XP_002536350.1| DNA polymerase I, putative [Ricinus communis]
 gi|223520014|gb|EEF26033.1| DNA polymerase I, putative [Ricinus communis]
          Length = 547

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 85/561 (15%), Positives = 159/561 (28%), Gaps = 118/561 (21%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLD-LVLKLQELIAQERKKLD 221
           D+   RE     +P S  E + ++L Q      +    I+++  +      ++     + 
Sbjct: 8   DIVQMRETG---MPWSQEEAENYVLAQWAKVAEHAAKLIEMEPSLAPFSAALSNPEAGIK 64

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            D+         +      +           + +     +K+ +         + + LNR
Sbjct: 65  ADLKAAIGQAFSNRGIELQMTE---KSGAFKIGEKDLRRVKAAVVEDAKPFFEEWVALNR 121

Query: 282 LASSG---SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              +G     + K  +     S DGRL           TGR S      Q  PR      
Sbjct: 122 AKKAGGMAREVSKYAS----RSYDGRLHPNTGH--GPVTGRLSSSEPNCQQFPRD----- 170

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA--GED 396
                                     R+ + +  G K+V AD + ++ RV A  A   + 
Sbjct: 171 -----------------------PGFRAIVRSRPGFKIVSADYSALDMRVGAACAIRAQR 207

Query: 397 WKIKAFANGE----DIYVTTYAKAFNTPIDKVSKEQRAIG-------KV---MELALGYQ 442
             + A+ +      D+Y+              ++ Q A         K    +  A G  
Sbjct: 208 QILDAYMDERAVPHDVYLCIARVIEGRITLDNARVQEANANRAFDEWKAERDVATAGGKD 267

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
              + ++         L    Q   +           +    ++D +    + D    TA
Sbjct: 268 AAKRYWEVYRQRARTRLLAGFQRCLAEVRQRADAAGTAEWGSLRDAFSIDGM-DIHTWTA 326

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA-RRVANVPRLVMRRHKRDVHIV 561
            ++        + G L       E  A + +    +   R+   V  L +    +   + 
Sbjct: 327 LDMF-----GHNPGTLFAGLQGEEVAAALKKWKKELGGDRQTGKVGNLSLLYAMQAFGLQ 381

Query: 562 LPSSR---------RLVYSDVKGDCSYLNT-ATSQLM----RERTY------GGKLTENI 601
             +++                K   +Y+      +      +E  Y      GGK  +  
Sbjct: 382 EAAAKNYNIHWTLEEASDVRSKWLAAYVEVDLWHKWTELNPKEEVYIPDPDRGGKFGKKQ 441

Query: 602 VQAI----SRDILCEGMKNA-----TKNGYDI------------------VLTVHDEIVS 634
           V A      R I   G+  A        G DI                  V  VHDE++ 
Sbjct: 442 VYAAYTLGERLIYAFGLNAALSYEDQSTGADILGLVMQEFRQHPGVFKCIVNQVHDEVLF 501

Query: 635 ETPDTPYFSVGT-LCSLMTKN 654
           E PD         +  +MT  
Sbjct: 502 EIPDDKVDEYNAVISRVMTDA 522


>gi|262342265|gb|ACY54643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPRKALNYCLQGNSAILAKRWM 169


>gi|229472393|gb|ACQ72711.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 42/135 (31%), Gaps = 14/135 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R  +I   G KLV +DLAGIE RV A   G  ++ +       +DI+     K       
Sbjct: 13  RELLITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y        T        L +     K       +  A    
Sbjct: 70  ------RRAVKTVTYAFLYGASDVKIGTS---YDSQLTEDQARKKGAEIRRAYLDAIPGL 120

Query: 483 LWMQDQYPEFAVKDK 497
             + +     A  D+
Sbjct: 121 ERLVEAVKTKAKVDR 135


>gi|229472183|gb|ACQ72606.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472275|gb|ACQ72652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472399|gb|ACQ72714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S G+ +V ADLAGIE R+L+      +  +        DI+     K    
Sbjct: 10  SRFRELFLPSPGQIMVGADLAGIELRMLSHFLAKYDQGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKST 469
                    R + K +  A  Y  G +              A   G +++  +   +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKEIRTAYVDAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               D  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLDAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|47934816|gb|AAT39846.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 126

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 28/135 (20%)

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +I +         L    + I    T  +    DGR+ G +   GA  TGR + 
Sbjct: 18  RVLEGIDIPEAKTIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV-TGRMTH 72

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                  +P                    +++ P G      RS      G KL+  D +
Sbjct: 73  HSPNLAQVP--------------------SVSAPYGKEC---RSFWCVPEGHKLIGCDAS 109

Query: 383 GIEARVLAWIAGEDW 397
           G+E R+LA    ++ 
Sbjct: 110 GLELRMLAHYMRDER 124


>gi|262212213|gb|ACY35723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 10  RFRELFILTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 68

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y  G +                       Q + + +    
Sbjct: 69  --------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 120

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 KLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 168


>gi|195338293|ref|XP_002035759.1| GM15104 [Drosophila sechellia]
 gi|194129639|gb|EDW51682.1| GM15104 [Drosophila sechellia]
          Length = 1145

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 92/324 (28%), Gaps = 72/324 (22%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 786  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 845

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 846  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F   +                              K+ +R       +   +L
Sbjct: 897  KAKAMKMFSITKG-----------------------------KRVYRL----REEFHDEL 923

Query: 525  T-------EGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
                    E     +Q   +++    R             R   I   S  R     + G
Sbjct: 924  DDRAYSSYEASRLAIQRNRTVAEVFHRPNWQGGTESAMFNRLEEIATGSQPRT--PFLGG 981

Query: 576  DCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDE- 631
              S    A +   +E+ +       +VQ+ + D   ++   M+    +     L+ HDE 
Sbjct: 982  RLSRALEADTGPDQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDEL 1041

Query: 632  --IVSETPDTPYFSVGTLCSLMTK 653
              +V E           + +LMT+
Sbjct: 1042 RYLVKEELSPKAALAMHITNLMTR 1065



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 81/271 (29%), Gaps = 25/271 (9%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--------- 104
           P +L+        + V HN  ++R   K+   I+    R++ T  L              
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-----SIDSPPYDCTRANHVQAWQLF 159
           L S  + A   L + E  + +     +   +C G        +   + T     Q++Q  
Sbjct: 301 LKSKKEPAAEDLGWLEQSS-LNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSL 359

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQE 216
             YC  DVEAT  + + L PL             + + G     ++ +   +        
Sbjct: 360 TNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNW-ERYIREAQLT 418

Query: 217 RKKLDEDIVKLTDGIIRSSRQ-----TYALRMYLFLITG-IDLVDMSEGTLKSILSHSNI 270
            + L  +           +        Y   ++L+     +  + + +   +  L    +
Sbjct: 419 YEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVEL 478

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                     RL +    +     L  A   
Sbjct: 479 KDSGNTPEERRLQAKFQHLYDQQALLPARRP 509


>gi|262212115|gb|ACY35674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342249|gb|ACY54635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      +D +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472543|gb|ACQ72786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     D +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRS-RIMADLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|284991224|ref|YP_003409778.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
 gi|284064469|gb|ADB75407.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
          Length = 552

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 101/325 (31%), Gaps = 66/325 (20%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGY--------RIDLDLV--LKLQELIAQERKKLDEDI 224
            RL  L   E    L+   +   G         R+  +L+             + L +++
Sbjct: 143 HRLALLLAAESSGALVAAEMTHAGLPWRADVHARLLTELLGPRPASGARPAVLEALAQEV 202

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +     A  +      G+ + D    TL+  L H  +  L +   L RL  
Sbjct: 203 RAALRAPGLNPDSPGA-LLAALQAAGLPVEDTRSWTLEQ-LDHPVVGPLLEYKRLARL-L 259

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + +    L+T       DGR R      G   TGRW+       ++P Q           
Sbjct: 260 TANGWAWLDTWVR----DGRFRSWFVPGGVV-TGRWASNGGGALSVPTQ----------- 303

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR   +A +G +LVVAD+A +E RVLA ++G+D   +A   
Sbjct: 304 -------------------VRPAAVADDGWRLVVADVAQLEPRVLAGMSGDDAMAEAARA 344

Query: 405 GEDIYV-TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            + +Y     A          + E RA  KV  L   Y              G  + + +
Sbjct: 345 AD-LYEGMVAAG---------TVETRAQAKVAILGAMYG-------ATRGESGRIMPRLA 387

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQ 488
           +         +          +   
Sbjct: 388 RRYPRAIGLVEQAARAGERGDVVHT 412


>gi|262342185|gb|ACY54603.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 188

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDW--KIKAFANGEDIYVTTYAKAFNTPI 421
           RS    S+    + +  +G+E R L   ++  D     +   NG DI+     + + T  
Sbjct: 10  RSLFKPSDNHLQIGSGASGLELRCLGHYLSRYDGGKLAEEVVNG-DIHTALA-EIYGTD- 66

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWE 476
                  R  GK +   L Y GG       A        +  Q ++         F D  
Sbjct: 67  -------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 119

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            A                  +L G     +    ++    + +LW
Sbjct: 120 AAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 164


>gi|262212335|gb|ACY35784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFAN-GEDIYVTTYAKAFNTPID 422
           RS +  S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLLKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|229472539|gb|ACQ72784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKST 469
                    R + K +  A  Y  G +              A   G +++Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKEKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|194860399|ref|XP_001969574.1| GG10182 [Drosophila erecta]
 gi|190661441|gb|EDV58633.1| GG10182 [Drosophila erecta]
          Length = 1142

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 94/315 (29%), Gaps = 54/315 (17%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 783  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 842

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 843  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 893

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F            +      + ++++      +    ++ A    + Q  + L
Sbjct: 894  KAKAMKMFS-----------ITKGKRVYRLREEFHDELDDRAYSSYEASRLAI-QRNRTL 941

Query: 525  TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            TE F             R             R   I   S  R     + G  S    A 
Sbjct: 942  TEVF------------HRPNWQGGTESAMFNRLEEIATGSQPRT--PFLGGRLSRALEAD 987

Query: 585  SQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDE---IVSETPD 638
                +E+ +       +VQ+ + D   ++   M+    +     L+ HDE   +V E   
Sbjct: 988  GGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEEFS 1047

Query: 639  TPYFSVGTLCSLMTK 653
                    + +LMT+
Sbjct: 1048 PKAALAMHITNLMTR 1062



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 83/283 (29%), Gaps = 29/283 (10%)

Query: 46  DRTEQSAMP----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D    S  P     +L+        + V HN  ++R   K+   I+    R++ T  L  
Sbjct: 229 DVDTDSERPHYTTDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHM 288

Query: 102 TNG---------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-----SIDSPPYDC 147
                       L S  + A   L + E  + +     +   +C G        +   + 
Sbjct: 289 CVSGVTSYQRAMLKSKKEPAAEDLGWLEQSS-LNSLVDVHRLYCGGDALSKEPRNIFVEG 347

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLD 204
           T     Q++Q    YC  DVEAT  + + L PL             + + G     ++ +
Sbjct: 348 TLEQVRQSFQSLTNYCASDVEATHRILRVLYPLYADRFPHPASLAGMLEMGSAYLPVNSN 407

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ-----TYALRMYLFLITG-IDLVDMSE 258
              +         + L  +           +        Y   ++L+     +  + + +
Sbjct: 408 W-ERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQ 466

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              +  L    +          RL +    +     L  A   
Sbjct: 467 PPKRKPLPTVEVKYAVNTPEERRLQAKFQHLYDQQALLPARRP 509


>gi|9634020|ref|NP_052094.1| 5B protein [Yersinia phage phiYeO3-12]
 gi|6599011|emb|CAB63615.1| 5B protein [Yersinia phage phiYeO3-12]
          Length = 384

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 83/330 (25%), Gaps = 71/330 (21%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR----LAS 284
           + +         ++  L     +      +G    ++    +  +  D    +    L  
Sbjct: 10  EFVTFKPSSRDHIQKKLQEAGWVPEKFTEKG--APVVDDEVLEHVRVDDPEKQACIDLIK 67

Query: 285 SGSAILK--------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               I K               V  DG++ G +   GA  TGR +        +P     
Sbjct: 68  EYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNPNGAV-TGRATHSFPNLAQVP--GVR 124

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                Q   A      +               I          D +G+E R LA      
Sbjct: 125 SPYGEQCRSAFGAEHHLDG-------------ITGKPWVQAGIDASGLELRCLAHF---- 167

Query: 397 WKIKAFANGE--------DIYV--TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-- 444
             +  F NGE        DI+      A+             R   K       Y  G  
Sbjct: 168 --MARFDNGEYANEILNGDIHTKNQNAAEL----------PTRDNAKTFIYGFLYGAGDE 215

Query: 445 -AKVFKTMASHCGLDL-QQFSQNVKSTSTFED-----------WEQAESHHLWMQDQYPE 491
                       G +L ++F +N  + +   +           W   E    W +     
Sbjct: 216 KIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQWKRRWIKG 275

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
              +   + +    +    ++    + +LW
Sbjct: 276 LDGRKVHVRSPHAALNTLLQSAGALICKLW 305


>gi|229472347|gb|ACQ72688.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA-FANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+  +A  D +  A      DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNRRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472185|gb|ACQ72607.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472199|gb|ACQ72614.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472315|gb|ACQ72672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342203|gb|ACY54612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262342195|gb|ACY54608.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y    +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGGKIIVDSPHKALSYCLQGNSAILAKRWM 169


>gi|262212147|gb|ACY35690.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y    +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALSYCLQGNSAILAKRWM 169


>gi|229472599|gb|ACQ72814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     D +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGKEIRS-RIMADLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|31711656|ref|NP_853574.1| gp14 [Enterobacteria phage SP6]
 gi|31505660|gb|AAP48753.1| gp14 [Enterobacteria phage SP6]
 gi|40787031|gb|AAR90005.1| 13 [Enterobacteria phage SP6]
          Length = 849

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 18/123 (14%)

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           R   + +        +R   IA  GK ++  D AG+E RVL+    +    +   +G DI
Sbjct: 539 RHRNVVNIPARGLYPLRDLFIAGKGKMILGCDGAGLELRVLSHFMNDPEYQEIVLHG-DI 597

Query: 409 YV---TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +             P       +R + K    A  Y  G      +A+ CG+   +  + 
Sbjct: 598 HTHNQLKA----GLP-------KRDMAKTFIYAFLYGSGIA---NLAAVCGVTEDEMKEV 643

Query: 466 VKS 468
           V  
Sbjct: 644 VAR 646


>gi|229472255|gb|ACQ72642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 11/143 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R    AS    +V ADLAGIE R+LA      ++ +        DI+     K       
Sbjct: 13  RKLFRASPTLVMVGADLAGIELRMLAHYLARYDEGRYADVLLNGDIHQENADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G             +     +  +    + D        
Sbjct: 70  ------RKQVKTVTYAFLYGAGDAKLGRSYDPQLSEKDAKKKGKEIRQAYMDAVPGLEKL 123

Query: 483 LWMQDQYPEFAVKDKLIGTACEL 505
           +       E    +   G  C +
Sbjct: 124 VTAVKSKAESGYINLCDGRRCSV 146


>gi|73951465|ref|XP_545850.2| PREDICTED: similar to DNA polymerase gamma subunit 1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Canis
            familiaris]
          Length = 1234

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 107/364 (29%), Gaps = 65/364 (17%)

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR+   + Q         +  I  + ++      + A P  + S+ +++ + A  G   V
Sbjct: 836  GRYGAILPQVV------TAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVFV 888

Query: 378  VADLAGIEARVL-----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKV 424
             AD+   E  +      A  AG        W         G D++  T A          
Sbjct: 889  GADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS---- 943

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL------QQFSQNVKSTSTFEDWEQA 478
                R   K+      Y  G    + +       L      ++  Q    T     +  +
Sbjct: 944  ----REHAKIFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLS 999

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            E    W+  +      + +    + + ++K  R         WK             G  
Sbjct: 1000 EEGE-WLVRELDLPVDRTEDGWVSLQDLRKIQREAS--RKSRWKKWEVAAERA--WRGGT 1054

Query: 539  SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             +     +  + M        +    SR L  S VKG+     T+               
Sbjct: 1055 ESEMFNKLESIAMSDTPCTPVLGCRISRALEPSAVKGE---FMTSRVNW----------- 1100

Query: 599  ENIVQAISRDILCEGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCS 649
              +VQ+ + D L   +         + I     +++HDE+   V E           + +
Sbjct: 1101 --VVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITN 1158

Query: 650  LMTK 653
            L+T+
Sbjct: 1159 LLTR 1162


>gi|229472283|gb|ACQ72656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472335|gb|ACQ72682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     D +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGKEIRS-RIMADLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|262342199|gb|ACY54610.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTP 420
             R   I + G+ +V ADLAGIE R+L+      ++ +        DI+     K     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS 69

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTS 470
                   R + K +  A  Y    +                       Q + + +    
Sbjct: 70  --------RKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 471 TFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
              +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 122 KLLEAIKKASERGFIKALDGRKIIVDSPHKALSYCLQGNSAILAKRWM 169


>gi|240275320|gb|EER38834.1| DNA polymerase gamma [Ajellomyces capsulatus H143]
          Length = 1084

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 74/254 (29%), Gaps = 31/254 (12%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LAK+ +    + S     +   +S+ V     +        ++ T +    + Q   +P 
Sbjct: 571 LAKEALEMNASCSYWISARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQI--IPM 628

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
              +   +  T                    +++ + A  G   V AD+   E  + A +
Sbjct: 629 GTITRRAVENT-----WLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASL 682

Query: 393 AGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            G+                    + G D++  T +              R   KV     
Sbjct: 683 VGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTAS-ILGIS--------RNDAKVFNYGR 733

Query: 440 GYQGGAKVFKTMASHCGLDL-QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            Y  G K   T+       + +Q ++ V +    E   +A +H   +  +      + + 
Sbjct: 734 IYGAGLKFAATLLRQFNPSMSEQETKRVAAKLYKETKGEAPNHSYSISLRSSRKQERPRT 793

Query: 499 IGTACELVKKAWRA 512
                 + +   R 
Sbjct: 794 PVLGAGITEALMRR 807


>gi|4455007|gb|AAD21034.1| DNA polymerase gamma [Neurospora crassa]
          Length = 1305

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 28/172 (16%)

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
           G    PQ +P    +   + +T                    +++ + A  G   V AD+
Sbjct: 687 GGFVLPQVIPMGTITRRAVERT-----WLTASNAKKNRVGSELKAMVRAPPGYVFVGADV 741

Query: 382 AGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQ 428
              E  + A + G+         A          + G D++  T +              
Sbjct: 742 DSEELWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAS-ILGIT-------- 791

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           R   KV      Y  G K    +       L +      +T  ++  + A++
Sbjct: 792 RNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKT 843


>gi|164428985|ref|XP_957747.2| DNA polymerase gamma [Neurospora crassa OR74A]
 gi|166214919|sp|Q9Y767|DPOG_NEUCR RecName: Full=DNA polymerase gamma, mitochondrial; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit;
           Flags: Precursor
 gi|157072364|gb|EAA28511.2| DNA polymerase gamma [Neurospora crassa OR74A]
          Length = 1456

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 28/172 (16%)

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
           G    PQ +P    +   + +T                    +++ + A  G   V AD+
Sbjct: 687 GGFVLPQVIPMGTITRRAVERT-----WLTASNAKKNRVGSELKAMVRAPPGYVFVGADV 741

Query: 382 AGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQ 428
              E  + A + G+         A          + G D++  T +              
Sbjct: 742 DSEELWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAS-ILGIT-------- 791

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           R   KV      Y  G K    +       L +      +T  ++  + A++
Sbjct: 792 RNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKT 843


>gi|229472205|gb|ACQ72617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYAGILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472203|gb|ACQ72616.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLPSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|262212209|gb|ACY35721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 29/169 (17%)

Query: 372 NGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
            G+ +V AD +GIE R+L+      +D +        DI+     K             R
Sbjct: 1   PGQVMVAADSSGIELRMLSHFPAKYDDGRYADILLNGDIHQVNADKI-GIS--------R 51

Query: 430 AIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTSTFEDWEQAE 479
            + K +  A  Y  G +                       + +   +          +  
Sbjct: 52  KLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDKLLAAIKTA 111

Query: 480 SHHLWMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           S   +++           P  A+   L G +  L K+      Q +  L
Sbjct: 112 SGRGFIKAIDGRKIMVDSPHKALNYCLQGNSAILAKRWMVINQQNIKDL 160


>gi|229472307|gb|ACQ72668.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472353|gb|ACQ72691.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  + ++S        F +   
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMANLDGFAELNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|229472233|gb|ACQ72631.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342135|gb|ACY54578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|17365997|sp|Q9QYV8|DPOG1_RAT RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|5912568|emb|CAB56206.1| DNA polymerase gamma [Rattus norvegicus]
 gi|149057256|gb|EDM08579.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
 gi|149057257|gb|EDM08580.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
          Length = 1216

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 29/218 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 818  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIA 876

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T A              R   KV  
Sbjct: 877  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKVFN 927

Query: 437  LALGYQGGAKVFKTMASHCGLDL------QQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
                Y  G    + +       L       +  Q    T     +  ++     ++    
Sbjct: 928  YGRIYGAGQSFAERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQLNV 987

Query: 491  EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                 +    +  +L K    A  +   + W+ +TE  
Sbjct: 988  PVDRTEDGWVSLQDLRKIRREASRKSRWKKWEVVTERA 1025


>gi|16758292|ref|NP_445980.1| DNA polymerase subunit gamma-1 [Rattus norvegicus]
 gi|5912570|emb|CAB56207.1| DNA polymerase gamma [Rattus norvegicus]
          Length = 1216

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 29/218 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 818  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIA 876

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T A              R   KV  
Sbjct: 877  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKVFN 927

Query: 437  LALGYQGGAKVFKTMASHCGLDL------QQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
                Y  G    + +       L       +  Q    T     +  ++     ++    
Sbjct: 928  YGRIYGAGQSFAERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQLNV 987

Query: 491  EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                 +    +  +L K    A  +   + W+ +TE  
Sbjct: 988  PVDRTEDGWVSLQDLRKIRREASRKSRWKKWEVVTERA 1025


>gi|229472563|gb|ACQ72796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     + +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRS-RIMANLDSFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|229472397|gb|ACQ72713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEVRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|281341789|gb|EFB17373.1| hypothetical protein PANDA_008249 [Ailuropoda melanoleuca]
          Length = 1214

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 107/400 (26%), Gaps = 66/400 (16%)

Query: 280  NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             R++S     L  + L  AV+            G             PQ +     +   
Sbjct: 784  KRISSQMVVWLPRSALPRAVT----RHPDYDEEGR-------YGAILPQVVTAGTITRRA 832

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED--- 396
            +  T     R +            +++ + A  G  LV AD+   E  + A +       
Sbjct: 833  VEPT-WLTARPDLPPLQPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAR 891

Query: 397  --------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
                    W         G D++  T A              R   K+      Y  G  
Sbjct: 892  MHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKIFNYGRIYGAG-- 940

Query: 447  VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                         ++         T ++  +       +      + + D+      EL 
Sbjct: 941  ---------QPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVRELH 991

Query: 507  KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP-RLVMRRHKRDVHIVLPSS 565
                R +       W  L +      +       ++   V  R  M   + ++   L S 
Sbjct: 992  LPVDRTEDG-----WVSLQDLRKIQREASRKSRWKKWEVVAERAWMGGTESEMFNKLES- 1045

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKL---TENIVQAISRDILCEGMKNAT--KN 620
              +  SD           +  L      G  +      +VQ+ + D L   +        
Sbjct: 1046 --IAMSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFE 1103

Query: 621  GYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
             + I     +++HDE+   V E           + +L+T+
Sbjct: 1104 EFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1143


>gi|262212077|gb|ACY35655.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +  ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMAGADLAGIELRMLSHFLARYDNGRYADILLNGDIHRVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472177|gb|ACQ72603.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472327|gb|ACQ72678.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472427|gb|ACQ72728.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342091|gb|ACY54556.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342095|gb|ACY54558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342101|gb|ACY54561.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342121|gb|ACY54571.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342139|gb|ACY54580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A]
 gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A]
          Length = 678

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 111/670 (16%), Positives = 191/670 (28%), Gaps = 176/670 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDL 57
           M  L  DIET         G+    ++     CA+          D          P D 
Sbjct: 1   MKLLLSDIET--------NGLLDTVDKFH---CAWT--------VDYFTGEWKAYRPWDF 41

Query: 58  LQYLRD------ETVMCVAHNS-LFERILFKK----TLGIDIPSK--RWICTSVLARTNG 104
            QY++D      E  + V HN   ++    KK      G ++       + T V++R   
Sbjct: 42  EQYIKDLEACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRL-- 99

Query: 105 LPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           L S+LK+    L        K+    +L A   +       Y    A  V+  +   +YC
Sbjct: 100 LHSNLKDTDAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYC 159

Query: 164 KRDVEATRELFKRL------IP-------------------LSDGERDLWLLDQTINDR- 197
           K+DV+ T +LF++        P                   L+  ER+ +  D    +R 
Sbjct: 160 KQDVQVTLKLFEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERL 219

Query: 198 -----GYR--IDLDLVL---------------------------------KLQELIAQER 217
                G R  I ++L                                   K   +    +
Sbjct: 220 YAEVAGRRAEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAK 279

Query: 218 KKLDEDIVKLTDGII-------RSSRQTYALRMYL---------FLITGIDLVDMSEGTL 261
           K      + L D           +      +   L         F   G  +VD  + TL
Sbjct: 280 KPTLAKTLYLKDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVD--DDTL 337

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKL--------NTLSEAVSSDGRLRGTLQFYG 313
             ++ H  + +  + L    L      I KL        N     +   G + G +   G
Sbjct: 338 SLVIEHKLVPE--EFLPKVELIKEYLVIQKLIGQLAEGDNAWLR-MDKGGYIHGQVNPNG 394

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  TGR +        +P               + + + +       ++  R        
Sbjct: 395 AV-TGRATHSYPNLAQVPS--------------IRKYKGVECRSLFGAEHHRD-YHTGKP 438

Query: 374 KKLVVADLAGIEARVLAWIA---GEDWKIKAFANGEDIYVT--TYAKAFNTPIDKVSKEQ 428
              V  D +G+E R L        +   I    NG DI+      A     P        
Sbjct: 439 WIQVGVDASGLELRCLGHFMAKFDDGEYINTILNG-DIHTQNQIAA---GLPT------- 487

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K       Y  GA+    +    G + ++    +      E+     S    + D 
Sbjct: 488 RDNAKTFIYGFLYGAGAQKIGEIVGKFGEEGKKAGAEL-IKKFLENTPAIASLREQVADA 546

Query: 489 YPEFAVKDKLIGTACELV-KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                 + K +G   ++  K+ W     G     +        ++Q  G+          
Sbjct: 547 ---LIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVRSPHAALNTLLQSAGA------LICK 597

Query: 548 RLVMRRHKRD 557
           + ++   K  
Sbjct: 598 KWIVEWDKGM 607


>gi|229472217|gb|ACQ72623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     D +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGKEIRS-RIMADLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVIRKLW 167


>gi|262342117|gb|ACY54569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R     S G+ +V ADLAGIE R+L+      +  +        DI+     K    
Sbjct: 10  SRFRELFQPSPGQVMVGADLAGIELRMLSHFLARYDGGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTM---------ASHCGLDLQQ-FSQNVKST 469
                    R + K +  A  Y  G +              A   G +++  + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKEIRTAYVEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472565|gb|ACQ72797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     + +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRS-RIMANLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|194039637|ref|XP_001927099.1| PREDICTED: DNA polymerase subunit gamma-1 [Sus scrofa]
          Length = 1224

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 36/226 (15%)

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR+   + Q         +  I  + ++      + A P  + S+ +++ + A  G  LV
Sbjct: 820  GRYGAILPQVV------TAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLV 872

Query: 378  VADLAGIEARVL-----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKV 424
             AD+   E  +      A  AG        W         G D++  T A          
Sbjct: 873  GADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS---- 927

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL------QQFSQNVKSTSTFEDWEQA 478
                R   K+      Y  G    + +       L      ++  Q    T     +  +
Sbjct: 928  ----REHAKIFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLS 983

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
            +    W+  +      + +    + + ++K  R   +   +   ++
Sbjct: 984  DEGE-WLVRELDLPVDRTEDGWISLQDLRKIQREASRKSRRKKWEV 1028


>gi|289617399|emb|CBI55887.1| unnamed protein product [Sordaria macrospora]
          Length = 1509

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 50/172 (29%), Gaps = 28/172 (16%)

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
           G    PQ +P    +   + +T                    +++ + A  G   V AD+
Sbjct: 687 GGFILPQLIPMGTITRRAVERT-----WLTASNAKKNRVGSELKAMVRAPPGYVFVGADV 741

Query: 382 AGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQ 428
              E  + A + G+         A          + G D++  T A              
Sbjct: 742 DSEELWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAA-ILGIT-------- 791

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           R   KV      Y  G K    +       L +      +T  ++  + A++
Sbjct: 792 RNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETITIATKLYDATKGAKT 843


>gi|1401344|gb|AAC47290.1| DNA polymerase gamma [Drosophila melanogaster]
          Length = 1145

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 93/317 (29%), Gaps = 58/317 (18%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 786  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 845

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 846  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F      +   ++   +     ++D+   +                       
Sbjct: 897  KAKAMKMF---SITKGKRVYRLREEFHDELEDRAYSSY---------------------- 931

Query: 525  TEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
             E     +Q   +++    R             R   I   S  R     + G  S    
Sbjct: 932  -EASRLAIQRNRTLAEVFHRPKWQGGTESAMFNRLEEIATGSQPRT--PFLGGRLSRALE 988

Query: 583  ATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDE---IVSET 636
            A +   +E+ +       +VQ+ + D   ++   M+    +     L+ HDE   +V E 
Sbjct: 989  ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEE 1048

Query: 637  PDTPYFSVGTLCSLMTK 653
                      + +LMT+
Sbjct: 1049 LSPKAALAMHITNLMTR 1065



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 82/283 (28%), Gaps = 29/283 (10%)

Query: 46  DRTEQSAMP----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D    S  P     +L+        + V HN  ++R   K+    +    R++ T  L  
Sbjct: 229 DVDTDSERPHYTTDELIPLGTTGPGLVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHM 288

Query: 102 TNG---------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-----SIDSPPYDC 147
                       L S  + A   L + E  + +     L   +C G        +   + 
Sbjct: 289 CVSGVTSYQRAMLKSKKEPAAEDLGWLEQSS-LNSLVELHRLYCGGDTLSKEPRNIFVEG 347

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLD 204
           T     Q++Q    YC  DVEAT  + + L PL             + + G     ++ +
Sbjct: 348 TLEQVRQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSN 407

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ-----TYALRMYLFLITG-IDLVDMSE 258
              +         + L  +           +        Y   ++L+     +  + + +
Sbjct: 408 W-ERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQ 466

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              +  L    +          RL +    +     L  A   
Sbjct: 467 PPKRKPLPTVELKDSGNTPEERRLQAKFQHLYDQQALLPARRP 509


>gi|19527699|gb|AAL89964.1| AT02241p [Drosophila melanogaster]
          Length = 1145

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 93/317 (29%), Gaps = 58/317 (18%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 786  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 845

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 846  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F      +   ++   +     ++D+   +                       
Sbjct: 897  KAKAMKMF---SITKGKRVYRLREEFHDELEDRAYSSY---------------------- 931

Query: 525  TEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
             E     +Q   +++    R             R   I   S  R     + G  S    
Sbjct: 932  -EASRLAIQRNRTLAEVFHRPKWQGGTESAMFNRLEEIATGSQPRT--PFLGGRLSRALE 988

Query: 583  ATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDE---IVSET 636
            A +   +E+ +       +VQ+ + D   ++   M+    +     L+ HDE   +V E 
Sbjct: 989  ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEE 1048

Query: 637  PDTPYFSVGTLCSLMTK 653
                      + +LMT+
Sbjct: 1049 LSPKAALAMHITNLMTR 1065



 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 29/283 (10%)

Query: 46  DRTEQSAMP----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D    S  P     +L+        + V HN  ++R   K+    +    R++ T  L  
Sbjct: 229 DVDTDSERPHYTTDELIPLGTTGPGLVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHM 288

Query: 102 TNG---------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-----SIDSPPYDC 147
                       L S  + A   L + E  + +     +   +C G        +   + 
Sbjct: 289 CVSGVTSYQRAMLKSKKEPAAEDLGWLEQSS-LNSLVEVHRLYCGGDTLSKEPRNIFVEG 347

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLD 204
           T     Q++Q    YC  DVEAT  + + L PL             + + G     ++ +
Sbjct: 348 TLEQVRQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSN 407

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ-----TYALRMYLFLITG-IDLVDMSE 258
              +         + L  +           +        Y   ++L+     +  + + +
Sbjct: 408 W-ERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQ 466

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              +  L    +          RL +    +     L  A   
Sbjct: 467 PPKRKPLPTVELKDSGNTPEERRLQAKFQHLYDQQALLPARRP 509


>gi|262212263|gb|ACY35748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G E R L   ++  D    A      DI+       + T   
Sbjct: 13  RSLFEPSDNHLQVGSDASGPELRCLGHYLSRYDGGKFAEEVVNGDIHTALAG-IYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +   L Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|262342097|gb|ACY54559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 29/166 (17%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K       
Sbjct: 13  RELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GIS-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKSTSTF 472
                 R + K +  A  Y  G +                       Q + + +      
Sbjct: 70  ------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 473 EDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
            +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 124 LEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|296809768|ref|XP_002845222.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
 gi|238842610|gb|EEQ32272.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
          Length = 1133

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 34/190 (17%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 664 ILPQVIPMGTITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSE 718

Query: 385 EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+                    A G D++  T  K             R  
Sbjct: 719 ELWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNN 768

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWM 485
            KV      Y  G K   T+       + +       ++  K T       +  S + ++
Sbjct: 769 AKVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRMLSENPFL 828

Query: 486 QDQYPEFAVK 495
           +     F   
Sbjct: 829 RGGTESFVFN 838


>gi|212533271|ref|XP_002146792.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
 gi|210072156|gb|EEA26245.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
          Length = 1122

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 77/268 (28%), Gaps = 38/268 (14%)

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +   D  +    + L+   +T   +  + ++ A +  A+    + S  +S+  R+   L 
Sbjct: 583 LPHKDGPQARCINPLAKGYLTYFERGTLSSKFALAKEALEMNASCSYWISARDRIMSQLV 642

Query: 311 FYGASRTGRWSGCV----FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            Y     G+           PQ +P    +   +  T                    +++
Sbjct: 643 VYEDDLNGQKEAKKQLGFILPQIIPMGTITRRAVENT-----WLTASNAKGNRVGSELKA 697

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTY 413
            I A  G   V AD+   E  + A + G+         A          A G D++  T 
Sbjct: 698 MIKAPPGYVFVGADVDSQELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTA 756

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVK 467
           +              R   KV      Y  G K   T+       L +       S+  K
Sbjct: 757 S-ILGIS--------RNDAKVFNYGRIYGAGLKFASTLLRQFNPTLTEKETSQIASKLYK 807

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVK 495
            T       +  +   + +     F   
Sbjct: 808 ETKGTRTTRKILNDGPFWRGGTESFVFN 835


>gi|2289912|gb|AAC47658.1| mitochondrial DNA polymerase catalytic subunit precursor [Drosophila
            melanogaster]
          Length = 1145

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 93/317 (29%), Gaps = 58/317 (18%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 786  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 845

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 846  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F      +   ++   +     ++D+   +                       
Sbjct: 897  KAKAMKMF---SITKGKRVYRLREEFHDELEDRAYSSY---------------------- 931

Query: 525  TEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
             E     +Q   +++    R             R   I   S  R     + G  S    
Sbjct: 932  -EASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIATGSQPRT--PFLGGRLSRALE 988

Query: 583  ATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDE---IVSET 636
            A +   +E+ +       +VQ+ + D   ++   M+    +     L+ HDE   +V E 
Sbjct: 989  ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEE 1048

Query: 637  PDTPYFSVGTLCSLMTK 653
                      + +LMT+
Sbjct: 1049 LSPKAALAMHITNLMTR 1065



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 81/271 (29%), Gaps = 25/271 (9%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--------- 104
           P +L+        + V HN  ++R   K+   I+    R++ T  L              
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-----SIDSPPYDCTRANHVQAWQLF 159
           L S  + A   L + E  + +     +   +C G        +   + T     Q++Q  
Sbjct: 301 LKSKKEPAAEDLGWLEQ-SPLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSL 359

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQE 216
             YC  DVEAT  + + L PL             + + G     ++ +   +        
Sbjct: 360 TNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNW-ERYIREAQLT 418

Query: 217 RKKLDEDIVKLTDGIIRSSRQ-----TYALRMYLFLITG-IDLVDMSEGTLKSILSHSNI 270
            + L  +           +        Y   ++L+     +  + + +   +  L    I
Sbjct: 419 YEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVEI 478

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                     RL +    +     L  A   
Sbjct: 479 KDSGNTPEERRLQAKFQHLYDQQALLPARRP 509


>gi|17136648|ref|NP_476821.1| tamas [Drosophila melanogaster]
 gi|27923967|sp|Q27607|DPOG1_DROME RecName: Full=DNA polymerase subunit gamma-1, mitochondrial; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            Short=Protein tamas; Flags: Precursor
 gi|7298099|gb|AAF53338.1| tamas [Drosophila melanogaster]
 gi|201065799|gb|ACH92309.1| FI06005p [Drosophila melanogaster]
          Length = 1145

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 93/317 (29%), Gaps = 58/317 (18%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 786  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 845

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 846  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F      +   ++   +     ++D+   +                       
Sbjct: 897  KAKAMKMF---SITKGKRVYRLREEFHDELEDRAYSSY---------------------- 931

Query: 525  TEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
             E     +Q   +++    R             R   I   S  R     + G  S    
Sbjct: 932  -EASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIATGSQPRT--PFLGGRLSRALE 988

Query: 583  ATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDE---IVSET 636
            A +   +E+ +       +VQ+ + D   ++   M+    +     L+ HDE   +V E 
Sbjct: 989  ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEE 1048

Query: 637  PDTPYFSVGTLCSLMTK 653
                      + +LMT+
Sbjct: 1049 LSPKAALAMHITNLMTR 1065



 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 29/283 (10%)

Query: 46  DRTEQSAMP----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
           D    S  P     +L+        + V HN  ++R   K+    +    R++ T  L  
Sbjct: 229 DVDTDSERPHYTTDELIPLGTTGPGLVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHM 288

Query: 102 TNG---------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-----SIDSPPYDC 147
                       L S  + A   L + E  + +     +   +C G        +   + 
Sbjct: 289 CVSGVTSYQRAMLKSKKEPAAEDLGWLEQSS-LNSLVEVHRLYCGGDTLSKEPRNIFVEG 347

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLD 204
           T     Q++Q    YC  DVEAT  + + L PL             + + G     ++ +
Sbjct: 348 TLEQVRQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSN 407

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ-----TYALRMYLFLITG-IDLVDMSE 258
              +         + L  +           +        Y   ++L+     +  + + +
Sbjct: 408 W-ERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQ 466

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              +  L    +          RL +    +     L  A   
Sbjct: 467 PPKRKPLPTVELKDSGNTPEERRLQAKFQHLYDQQALLPARRP 509


>gi|307184738|gb|EFN71060.1| DNA polymerase subunit gamma-1, mitochondrial [Camponotus floridanus]
          Length = 1254

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 92/317 (29%), Gaps = 56/317 (17%)

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFA 403
            +      +R  + A  G  +V AD+   E  +      A                I   +
Sbjct: 876  IERIGSELRCMVQAPPGYNIVGADVDSQELWIASIIGDAHYKSIHGATPFGWMTLIGTKS 935

Query: 404  NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            NG D++  T                R   KV+  A  Y  G K  + +       +    
Sbjct: 936  NGTDMHSVTAKAI-GIS--------RDHAKVINYARIYGAGQKFAERLLKQFNPSMTDAE 986

Query: 464  QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-KHQGVLQLWK 522
               KS   F   +  +   L  +    +   K      A ++ K   +  +       W 
Sbjct: 987  ATSKSRKMFALTKGKKVFRLKAEFINNDLEDKLYTSYQAYQMAKLHGKTLQDMFQKSEWM 1046

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            D +E       E  + S   V                +    SR L  +D   D  +L  
Sbjct: 1047 DGSESAMFNRLEEIAGSKHPVTP-------------FLNARLSRALEITDTDDDDKFL-- 1091

Query: 583  ATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                              +VQ+ + D   ++   M+   ++     L+ HDE+    P  
Sbjct: 1092 ------------PTKINWVVQSGAVDFLHLMLVCMRWLMRDNARFCLSFHDEVRYLVPSR 1139

Query: 640  PYFSVG---TLCSLMTK 653
              ++      + +L+T+
Sbjct: 1140 YKYNAALAMHVTNLLTR 1156



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 81/268 (30%), Gaps = 26/268 (9%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L Q+ +   ++ V HN  ++R   K+   ++    R++ T  L       +S + + L
Sbjct: 341 HKLNQHQKKPKII-VGHNVSYDRSRIKEQYWMNCTGSRFLDTMSLHICVSGLNSYQRSLL 399

Query: 115 ALNFSEHLTKMEEGK--------ALIARFCKGSIDSPPYD----CTRANHVQAWQLFGEY 162
                  L K              +   +C   I     D     T  +    + +   Y
Sbjct: 400 LSKKKPDLEKDNWQSNTSLNSLIEVHKLYCGSEISKESRDIFVEGTIEDVKNNFNMLMTY 459

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY----------RIDLDLVLKLQEL 212
           C  D  AT  + + L PL        +    + + G           R   +      +L
Sbjct: 460 CASDAVATHNVLRNLFPLFQERFPHPVTLAGMLELGSAYLPVNSNWQRYLEESESTFDDL 519

Query: 213 IAQERKKLDEDIVKLTDGII-RSSRQTYALRMYLFLITGIDLV-DMSEGTLKSILSHSNI 270
             + +  L +    +   +     +Q   +    +    I +   M +      +   ++
Sbjct: 520 NYEAKFTLAKRADTVCHLMHDEKYKQDLWMWDQDWSTQEIKMKAKMPKKVKLDNIETKDM 579

Query: 271 TQLA-KDLILNRLASSGSAILKLNTLSE 297
            +L+ K  + +        + K     E
Sbjct: 580 EKLSDKKYLSDDEEEEQDPLAKEFAYLE 607


>gi|241895006|ref|ZP_04782302.1| hypothetical protein HMPREF0877_0276 [Weissella paramesenteroides
           ATCC 33313]
 gi|241871724|gb|EER75475.1| hypothetical protein HMPREF0877_0276 [Weissella paramesenteroides
           ATCC 33313]
          Length = 325

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              IL +L S G  I     + + +S    +  T +F       RWS  +   Q      
Sbjct: 13  DKYILPQLNSKGFTISYYQIIQDYLSDKLIIDDTFEFR------RWSTGLLNMQ-----G 61

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCV----------RSCIIASNGKKLVVADLAGI 384
           R  +     +  + R E  A+     S             R+ ++A  G++ V  D+   
Sbjct: 62  RVIDETAGVVHVVGRHEAYANIPMQISTSAPNTQAIPKWCRNYLVAPTGRRFVALDIGSA 121

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQ 442
           E R LA +A ++    A + G  +Y +         + + +     R I K + +   Y 
Sbjct: 122 EPRALAGVADDEKLRMAISEG--LYESV-----GNSLLEHTGIIIPRKIVKRLFMGFLYG 174

Query: 443 GGAKVFKTMASHCGLD 458
                     +   LD
Sbjct: 175 QSLTGVAATLAEISLD 190


>gi|262212309|gb|ACY35771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  G+ +   L Y GG       A        +  Q ++     +        +
Sbjct: 70  ------RKSGEGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKI-MQGLSGLADLN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|296277367|ref|ZP_06859874.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MR1]
          Length = 30

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 1   IETIMNKPVDWAKGLNLNSDGFTSPFYMK 29


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis]
          Length = 1461

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 23/145 (15%)

Query: 260  TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG------RLRGTLQFYG 313
             ++++   + I +L    I+  L S  ++   +  L      D       R+  +L    
Sbjct: 1332 AVEALCEINAIEKLLSAFIIP-LQSDATSTTTV--LPNPPGRDTPSRAVHRVHCSLNIN- 1387

Query: 314  ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--S 371
             + TGR S          R    E  L   I A+         L      VR    A   
Sbjct: 1388 -TETGRLSAR--------RHVCCEMRLH--ISAVVPNLQNQPALEKDRYKVRRAFTADTE 1436

Query: 372  NGKKLVVADLAGIEARVLAWIAGED 396
             G  LVVAD   +E R+LA +    
Sbjct: 1437 GGNTLVVADYGQLELRILAHMTNCQ 1461


>gi|108861996|ref|YP_654112.1| 13 [Enterobacteria phage K1-5]
 gi|40787082|gb|AAR90053.1| 13 [Enterobacteria phage K1-5]
          Length = 846

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           R   + +        +R   IA  GK ++  D AG+E RVL+    +    +   +G DI
Sbjct: 538 RHRNVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPEYQEIVLHG-DI 596

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           +     KA   P       +R + K    A  Y  G 
Sbjct: 597 HTHNQMKA-GLP-------KRDMAKTFIYAFLYGSGI 625



 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 30/110 (27%)

Query: 579 YLNTATSQLMRERTYGGKLTEN-----IVQAISRDILCEGMKN-----------ATKNGY 622
           YL        R R  GG+L E+     ++Q      +   +                 G 
Sbjct: 669 YLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSLCMKYALVRAFAVMRKEGVALDSMGN 728

Query: 623 DI-VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
              +  VHDEI  E P+     +                LP   EG+E +
Sbjct: 729 PCGIANVHDEIQMEVPEDEVLYLN-------------YDLPFTLEGFETE 765


>gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A]
          Length = 678

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 102/669 (15%), Positives = 176/669 (26%), Gaps = 174/669 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDL 57
           M  L  DIET         G+    ++     CA+          D          P D 
Sbjct: 1   MKLLLSDIET--------NGLLDTVDKFH---CAWT--------VDYFTGEWKAYRPWDF 41

Query: 58  LQYLRD------ETVMCVAHNS-LFERILFKK----TLGIDIPSK--RWICTSVLARTN- 103
            QY++D      E  + V HN   ++    KK      G ++       + T V++R   
Sbjct: 42  EQYIKDLEACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLH 101

Query: 104 ------------------GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                              L  S       +   E      E +A    F +  +D    
Sbjct: 102 SNLKDTDAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQ 161

Query: 146 DCTRANHV------QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR-- 197
           D      +        W  F        E+     +    L+  ER+ +  D    +R  
Sbjct: 162 DVQITLKLFEKFMGDTWY-FPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLY 220

Query: 198 ----GYR--IDLDLVL---------------------------------KLQELIAQERK 218
               G R  I ++L                                   K   +    +K
Sbjct: 221 AEVAGRRAEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKK 280

Query: 219 KLDEDIVKLTDGII-------RSSRQTYALRMYL---------FLITGIDLVDMSEGTLK 262
                 + L D           +      +   L         F   G  +VD  + TL 
Sbjct: 281 PTLAKTLYLKDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVD--DDTLS 338

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL--------NTLSEAVSSDGRLRGTLQFYGA 314
            ++ H  + +  + L    L      I KL        N     +   G + G +   GA
Sbjct: 339 LVIEHKLVPE--EFLPKVELIKEYLVIQKLIGQLAEGDNAWLR-MDKGGYIHGQVNPNGA 395

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR +        +P               + + + +       ++  R         
Sbjct: 396 V-TGRATHSYPNLAQVPS--------------IRKYKGVECRSLFGAEHHRD-YHTGKPW 439

Query: 375 KLVVADLAGIEARVLAWIA---GEDWKIKAFANGEDIYVT--TYAKAFNTPIDKVSKEQR 429
             V  D +G+E R L        +   I    NG DI+      A     P        R
Sbjct: 440 IQVGVDASGLELRCLGHFMAKFDDGEYINTILNG-DIHTQNQIAA---GLPT-------R 488

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K       Y  GA+    +    G + ++    +      E+     S    + D  
Sbjct: 489 DNAKTFIYGFLYGAGAQKIGEIVGKFGEEGKKAGAEL-IKKFLENTPAIASLREQVADA- 546

Query: 490 PEFAVKDKLIGTACELV-KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                + K +G   ++  K+ W     G     +        ++Q  G+          +
Sbjct: 547 --LIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVRSPHAALNTLLQSAGA------LICKK 598

Query: 549 LVMRRHKRD 557
            ++   K  
Sbjct: 599 WIVEWDKGM 607


>gi|262212307|gb|ACY35770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 16/164 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFA-NGEDIYVTTYAKAFNTPID 422
           RS    S+    V +D +G+E R L   ++  D    A      DI+     + + T   
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQ 477
                 R  GK +     Y GG       A        +  Q ++         F D   
Sbjct: 70  ------RKSGKGVTYCPIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNA 123

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
           A                  +L G     +    ++    + +LW
Sbjct: 124 AIQERAKSGVLKGLDGRPIRLRGKNHAALNYLLQSAGAIICKLW 167


>gi|47219815|emb|CAG03442.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1246

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 27/187 (14%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDW--------KIKAFAN 404
                  +++ +    G  LV AD+   E  + A       AG                + 
Sbjct: 888  DRVGSELKAMVQVPPGYHLVGADVDSQELWIAAVLGEAHFAGMHGCTAFGWMTLQGKKSQ 947

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV      Y  G    + +       L Q   
Sbjct: 948  GTDLHSRTADAV-GIS--------REHAKVFNYGRIYGAGQAFAERLLMQFNHRLSQTEA 998

Query: 465  NVKSTSTFEDWEQAESHHL-----WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            + K+   +   +    +HL     W+  +      +++    + + +++  R   Q   +
Sbjct: 999  DRKAKQMYSLTKGVRRYHLSEEGEWLVKELGIEVEREENGSVSLQELRRITRLASQCSRR 1058

Query: 520  LWKDLTE 526
               DL E
Sbjct: 1059 KKWDLVE 1065


>gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 363

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 106/315 (33%), Gaps = 67/315 (21%)

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V  V HN+ F+    +      IP KR+ CT V A T    SS +N+  +L     
Sbjct: 65  NDTDVTFVIHNASFDVPALR---LRGIPIKRYFCTQVAAHTWHPKSSEENSLDSL----T 117

Query: 122 LTKMEEGKALIARF--CKGSIDSPPYDCTRANHVQAW----QLFGEYCKRDVEATRELFK 175
             K++    L       KG      Y        + W     +F  Y   D++AT +L+ 
Sbjct: 118 GMKLDLRAELEVYRPDLKGKPKGYEYRLYDDKSHRGWSTVNDIFHSYLVSDLQATGKLYT 177

Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL---- 220
            L             L D  +    L       G  +D+D V ++Q  +   R +     
Sbjct: 178 TLEDNFSSDERALRCLLDINQPYVELIIEFEQ-GSWVDVDRVDEVQSKLQTLRDEAWSEI 236

Query: 221 -------DEDIVKLTDG---------------IIRSSRQTYALRMYLFLITGIDLVDMSE 258
                    +I +  +G               +  +   +  +   L  + G +   +S+
Sbjct: 237 TTHIRYDVTEIKRYKNGYKKRNGVVTYDHCPLVDFNPGSSDQVAAALTYLYGWEPTKLSD 296

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--------SSDGRLRGTLQ 310
            T K   S   + +L   L+        S+++K   +++ +        + DG +     
Sbjct: 297 KTGKPSTSSEVLEELNYPLV--------SSLVKYQKMAKLMQFIPQIQANLDGNILRPSY 348

Query: 311 FYGASRTGRWSGCVF 325
              A+RT R S    
Sbjct: 349 NQSATRTTRLSSSKP 363


>gi|83571734|ref|YP_424986.1| putative DNA polymerase [Enterobacteria phage K1E]
 gi|83308185|emb|CAJ29417.1| gp13 protein [Enterobacteria phage K1E]
          Length = 848

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           R   + +        +R   IA  GK ++  D AG+E RVL+    +        +G DI
Sbjct: 538 RHRNVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPEYQDIVLHG-DI 596

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           +     KA   P       +R + K    A  Y  G 
Sbjct: 597 HTHNQMKA-GLP-------KRDMAKTFIYAFLYGSGI 625



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 30/110 (27%)

Query: 579 YLNTATSQLMRERTYGGKLTEN-----IVQAISRDILCEGMKN-----------ATKNGY 622
           YL        R R  GG+L E+     ++Q      +   +                 G 
Sbjct: 669 YLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSLCMKYALVRAFAVMRKEGVALDSMGN 728

Query: 623 DI-VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
              +  VHDEI  E P+     +                LP   EG+E +
Sbjct: 729 PCGIANVHDEIQMEVPEDEVLYLN-------------YDLPFTLEGFETE 765


>gi|317150544|ref|XP_001824106.2| DNA polymerase gamma [Aspergillus oryzae RIB40]
          Length = 1107

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 30/182 (16%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQT-IQALNRGETIADPLGLASDCVRSCII 369
              AS           PQ +P    +   +  T + A N  E            +++ I 
Sbjct: 624 QKSASNNAESRTGFILPQVIPMGTITRRAVENTWLTASNAKE------NRVGSELKAMIK 677

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKA 416
           A  G   V AD+   E  + A + G+         A          A G D++  T  K 
Sbjct: 678 APPGYVFVGADVDSQELWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KI 735

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                       R   KV      Y  G K   ++       + +      +T  +++ +
Sbjct: 736 LGIS--------RNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETK 787

Query: 477 QA 478
            A
Sbjct: 788 GA 789


>gi|229472559|gb|ACQ72794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 31/166 (18%)

Query: 373 GKKLVVADLAGIEARVLAW-IAGEDWKI--KAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           G  +V ADLAGIE R+LA  +A  D         NG DI+     K             R
Sbjct: 1   GYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS--------R 50

Query: 430 AIGKVMELALGYQGGAKVF----------KTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
            + K +  A  Y  G K            K   +      Q +   +          +++
Sbjct: 51  RLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAVKSK 110

Query: 480 SHHLWMQD--------QYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           +   ++Q              A+   L G+A  + K      H  +
Sbjct: 111 AESGYIQLCDGRRCPVDGSHKALNYLLQGSAGCVAKLWMVHTHNVI 156


>gi|238499913|ref|XP_002381191.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
 gi|220692944|gb|EED49290.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
          Length = 1015

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 30/182 (16%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQT-IQALNRGETIADPLGLASDCVRSCII 369
              AS           PQ +P    +   +  T + A N  E            +++ I 
Sbjct: 532 QKSASNNAESRTGFILPQVIPMGTITRRAVENTWLTASNAKE------NRVGSELKAMIK 585

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKA 416
           A  G   V AD+   E  + A + G+         A          A G D++  T  K 
Sbjct: 586 APPGYVFVGADVDSQELWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KI 643

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                       R   KV      Y  G K   ++       + +      +T  +++ +
Sbjct: 644 LGIS--------RNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETK 695

Query: 477 QA 478
            A
Sbjct: 696 GA 697


>gi|229472567|gb|ACQ72798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+             
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA--------- 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           ++    R  GK +   L Y GG       A        +  + ++S  +  + +   + +
Sbjct: 64  EICGTDRKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGEEIRS-RSMANLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|315042021|ref|XP_003170387.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
 gi|311345421|gb|EFR04624.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
          Length = 1138

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 45/165 (27%), Gaps = 28/165 (16%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 670 ILPQVIPMGTITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSE 724

Query: 385 EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+                    A G D++  T  K             R  
Sbjct: 725 ELWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNN 774

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            KV      Y  G K   T+       + +      +   +++ +
Sbjct: 775 AKVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETK 819


>gi|229472581|gb|ACQ72805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRPQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     + +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRS-RIMANLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|83772845|dbj|BAE62973.1| unnamed protein product [Aspergillus oryzae]
          Length = 1017

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 30/182 (16%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQT-IQALNRGETIADPLGLASDCVRSCII 369
              AS           PQ +P    +   +  T + A N  E            +++ I 
Sbjct: 648 QKSASNNAESRTGFILPQVIPMGTITRRAVENTWLTASNAKE------NRVGSELKAMIK 701

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKA 416
           A  G   V AD+   E  + A + G+         A          A G D++  T  K 
Sbjct: 702 APPGYVFVGADVDSQELWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KI 759

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                       R   KV      Y  G K   ++       + +      +T  +++ +
Sbjct: 760 LGIS--------RNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETK 811

Query: 477 QA 478
            A
Sbjct: 812 GA 813


>gi|195579078|ref|XP_002079389.1| GD22040 [Drosophila simulans]
 gi|194191398|gb|EDX04974.1| GD22040 [Drosophila simulans]
          Length = 1078

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 25/150 (16%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                 +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 734 DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 793

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 794 GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 844

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
             K+   F      +   ++   +    A+
Sbjct: 845 KAKAIKMF---SITKGKQVYSSYEASRLAI 871


>gi|296420113|ref|XP_002839625.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635808|emb|CAZ83816.1| unnamed protein product [Tuber melanosporum]
          Length = 1038

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 63/227 (27%), Gaps = 44/227 (19%)

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY--GASRTGR 319
           K  + +     L+ +  L R A   +A          +S+  R+R  +         T  
Sbjct: 497 KGYVQYFESQTLSSEYPLAREALEMNAACSY-----WISARDRIRSQMVVQRSELEHTEG 551

Query: 320 WSG-----------CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
             G            +  PQ +P    +   + +T                    +++ +
Sbjct: 552 MEGVEKAEESLDDVGIILPQLIPMGTITRRAVERT-----WLTASNAKKHRLGSELKAKV 606

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKI---KAF---------ANGEDIYVTTYAKA 416
           IA  G   V AD+   E  + + +    +KI    A          ANG D++  T    
Sbjct: 607 IAPQGYAFVGADVDSQELWIASLLGDAQFKIHGGNALGFMTLEGTKANGTDLHSKTA-NI 665

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
                       R   KV      Y  G     T+       +    
Sbjct: 666 LGIS--------RDNAKVFNYGRIYGAGVGFASTLLRAFNPAITDAK 704


>gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 303

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 47/291 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYAWDD-----EPVKLWD-RTEQSAMPSD 56
           L++D E           V  Y  +   ++L     D      E V + D   +       
Sbjct: 23  LWLDTE-----------VADYKTDTPQLSLIQVLADGNDLTAESVGILDVLYQPELADEF 71

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + + + +  +  V HN+ ++R    K LG    +K   CT  LA+T             L
Sbjct: 72  IAKVMYNPAIEKVFHNASYDR----KFLGKH-KAKNVTCTLELAKTIPYYR--------L 118

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               +  K      L   F                         +Y  +DV     L + 
Sbjct: 119 PVPNYQLK-----TLTEYFGICPQVDKTEQTGDWRKRPLSPRQLDYAAKDVVYVAHLHRH 173

Query: 177 LI------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV--KLT 228
           L+      P ++    L L  + I  R  ++D ++    + L A  + +  + +   +L+
Sbjct: 174 LLDLAQPDPATEDIEALTLRYRQIEHRWKQLDTEIQQIKERLKAAMQAQNVKKVHGFRLS 233

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKD 276
                S +  +     +    GI+L     +++   + +        + ++
Sbjct: 234 SQNRTSKKVAFHQLAEVTKKLGIELDISVQLTKSLQQKLGEVMEELPVEEE 284


>gi|17380447|sp|P54099|DPOG1_MOUSE RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|9082197|gb|AAF82772.1|AF268975_1 mitochondrial DNA polymerase gamma [Mus musculus]
          Length = 1239

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 109/351 (31%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 820  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIA 878

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T A              R   K+  
Sbjct: 879  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKIFN 929

Query: 437  LALGYQGGAKVFKT--MASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G    +   M  +  L  Q+    +Q + + +      +  +   W+  Q   
Sbjct: 930  YGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNL 989

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++   R         WK             G   +     +  + M
Sbjct: 990  PVDRTEDGWVSLQDLRMIRREAS--RKSRWKKWEVAAERA--WTGGTESEMFNKLESIAM 1045

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                R   +    SR L  S V+G+     T+                 +VQ+ + D L 
Sbjct: 1046 SDTPRTPVLGCCISRALEPSVVQGE---FITSRVNW-------------VVQSSAVDYLH 1089

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1090 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1140


>gi|229472545|gb|ACQ72787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        D++     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDVHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
 gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
          Length = 427

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 113/379 (29%), Gaps = 79/379 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVIT---LCAYAWDDEPVK-LWDRTEQSAMPSDLLQ 59
           L +D ET     +   G  A A         L    W    +  + D       P ++  
Sbjct: 32  LAMDYETY--ADVETWGPQASALDPHTLVARLLQINWPGNAIPYVIDL-RALDWPIEIRD 88

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
              D +V  V  N+ FE ++ + T G+        C  VL          +    A  F 
Sbjct: 89  IWLDSSVRKVCFNARFEALVTQATWGVW--PDNLYCAMVL---------FQQIGAATGFK 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE------- 172
              T+     +L+       ++        +  +   QL  +Y   DV A R        
Sbjct: 138 AGRTRGYSYGSLVRDILDTPLNKELASSDWSGELTPAQL--QYAALDVGAPRNSNYTSLL 195

Query: 173 -----------LFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                      L+   +P + + ++  ++    +   G  I+++++         E    
Sbjct: 196 LEAYALLRNELLYTYEMPQVEEIDQAAFMEIARMEWNGLPINMNVMGSFLSTAQSELDNY 255

Query: 221 DEDIVKLTDGIIRSS----------------------RQTYALRMYLFLITGIDLVDMSE 258
              +    D  +                             AL   +     + L ++ +
Sbjct: 256 KLRMSAHFDFSVDQVVDWNSGVPQVTLVVPDKITALLNNPTALVSRIQEFLPVKLDNLQQ 315

Query: 259 GTLKSILSHSNITQLA--------KDLILNRLASSGSAILKLNTLSEAVSS--------- 301
            TL+++L   +             ++ I +      S +L+   L++ VS+         
Sbjct: 316 KTLETVLRELDSEDDGDGEDGATSEESIRDLGIQVISDLLRYKKLTKMVSTNWAALINPR 375

Query: 302 DGRLRGTLQFYGASRTGRW 320
            G +    Q  G + TGR 
Sbjct: 376 TGNVHARYQTIG-TSTGRM 393


>gi|74226616|dbj|BAE21732.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 119/401 (29%), Gaps = 72/401 (17%)

Query: 280  NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             R++S     L  + L   V+       +    G             PQ +     +   
Sbjct: 784  KRISSQMVVWLPRSALPRVVT----RHPSFDEEG-------HYGAILPQVVTAGTITR-- 830

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAG 394
              + ++      + A P  + S+ +++ + A  G  LV AD+   E  +      A  AG
Sbjct: 831  --RAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAG 887

Query: 395  ED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
                    W         G D++  T A              R   K+      Y  G  
Sbjct: 888  MHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKIFNYGRIYGAGQS 938

Query: 447  VFKT--MASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              +   M  +  L  Q+    +Q + + +      +  +   W+  Q      + +    
Sbjct: 939  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 998

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            + + ++   R         WK             G   +     +  + M    R   + 
Sbjct: 999  SLQDLRMIQREAS--RKSRWKKWEVASERA--WTGGTESEMFNKLESIAMSDTPRTPVLG 1054

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--K 619
               SR L  S V+G+     T+                 +VQ+ + D L   +       
Sbjct: 1055 CCISRALEPSVVQGE---FITSRVNW-------------VVQSSAVDYLHLMLVAMKWLF 1098

Query: 620  NGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              + I     +++HDE+   V E           + +L+T+
Sbjct: 1099 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1139


>gi|195472713|ref|XP_002088644.1| GE11427 [Drosophila yakuba]
 gi|194174745|gb|EDW88356.1| GE11427 [Drosophila yakuba]
          Length = 1145

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 88/322 (27%), Gaps = 68/322 (21%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +RS + A  G +LV AD+   E  +      A+  GE             + +N
Sbjct: 786  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 845

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T                R   KV+  A  Y  G    +T+             
Sbjct: 846  GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
              K+   F   +                              K+ +R       +   +L
Sbjct: 897  KAKAMKMFSITKG-----------------------------KRVYRL----REEFHDEL 923

Query: 525  -TEGFACVVQEGGSISARRVANVPRLVMRRHKR---DVHIVLP---SSRRLVYSDVKGDC 577
                ++       +I   R                  +   L    +        + G  
Sbjct: 924  EDRAYSSYEASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIATGSEPRTPFLGGRL 983

Query: 578  SYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDE--- 631
            S    A     +E+ +       +VQ+ + D   ++   M+    +     L+ HDE   
Sbjct: 984  SRALEADGGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRY 1043

Query: 632  IVSETPDTPYFSVGTLCSLMTK 653
            +V E           + +LMT+
Sbjct: 1044 LVKEELSPKAALAMHITNLMTR 1065



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 31/274 (11%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--------- 104
           P +L+        + V HN  ++R   K+   I+    R++ T  L              
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-----SIDSPPYDCTRANHVQAWQLF 159
           L S  + A   L + E  + +     +   +C G        +   + T     Q++Q  
Sbjct: 301 LKSKKEPAAEDLGWLEQSS-LNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSL 359

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQE 216
             YC  DVEAT  + + L PL             + + G     ++ +   +        
Sbjct: 360 TNYCASDVEATHRILRVLYPLYADRFPHPASLAGMLEMGSAYLPVNSNW-ERYIREAQLT 418

Query: 217 RKKLDEDIVKLTDGIIRSS---------RQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            + L  +           +         RQ   L    + +  + L    +      + H
Sbjct: 419 YEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVEH 478

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            N     ++    RL +    +     L  A   
Sbjct: 479 KNAGNTPEER---RLQAKFQHLYDQQALLPARRP 509


>gi|254261387|ref|ZP_04952441.1| 38L [Burkholderia pseudomallei 1710a]
 gi|254220076|gb|EET09460.1| 38L [Burkholderia pseudomallei 1710a]
          Length = 800

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 61/174 (35%), Gaps = 32/174 (18%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLAS-SGSAILKLNTLSEAVSSDGRLRGTLQF 311
           +  +    +  + + +N+ +L KDL    + +   + + K   +   V  DG +   +  
Sbjct: 388 IEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQK--GMLTLVGDDGIIHQKIN- 444

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
           + ++ T R+S      QN+                           G     V+S  ++ 
Sbjct: 445 HTSTVTARFSEQDPNLQNVS--------------------------GAGKSQVKSVFVSR 478

Query: 372 N--GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                ++V +D   +E  + A ++G    I+    G D++    ++      + 
Sbjct: 479 WLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYED 532


>gi|76810071|ref|YP_333053.1| hypothetical protein BURPS1710b_1649 [Burkholderia pseudomallei
           1710b]
 gi|76579524|gb|ABA48999.1| 38L [Burkholderia pseudomallei 1710b]
          Length = 774

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 61/174 (35%), Gaps = 32/174 (18%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLAS-SGSAILKLNTLSEAVSSDGRLRGTLQF 311
           +  +    +  + + +N+ +L KDL    + +   + + K   +   V  DG +   +  
Sbjct: 362 IEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQK--GMLTLVGDDGIIHQKIN- 418

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
           + ++ T R+S      QN+                           G     V+S  ++ 
Sbjct: 419 HTSTVTARFSEQDPNLQNVS--------------------------GAGKSQVKSVFVSR 452

Query: 372 N--GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
                ++V +D   +E  + A ++G    I+    G D++    ++      + 
Sbjct: 453 WLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYED 506


>gi|242777655|ref|XP_002479078.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
 gi|218722697|gb|EED22115.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
          Length = 1129

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 50/190 (26%), Gaps = 34/190 (17%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ I A  G   V AD+   
Sbjct: 666 ILPQVIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMIKAPPGYVFVGADVDSQ 720

Query: 385 EARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+         A          A G D++  T +              R  
Sbjct: 721 ELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTAS-ILGIS--------RND 770

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWM 485
            KV      Y  G K   T+       L +       S+  K T       +  +   + 
Sbjct: 771 AKVFNYGRIYGAGLKFASTLLRQFNPTLTEKETSQIASKLYKETKGTRTTRKILNDGPFW 830

Query: 486 QDQYPEFAVK 495
           +     F   
Sbjct: 831 RGGTESFVFN 840


>gi|262342235|gb|ACY54628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAG+E R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGVELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|229472345|gb|ACQ72687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPID 422
           R        +  V AD +G+E R L       +  K        DI+     + + T   
Sbjct: 13  RELFHPGANRSQVGADASGLELRRLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD-- 69

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R  GK +   L Y GG       A        +  + ++S     D +   + +
Sbjct: 70  ------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRS-RIMADLDGFAALN 122

Query: 483 LWMQDQYPEFAVKD------KLIGTACELVKKAWRAKHQGVLQLW 521
             +Q++     +K       +L G     +    ++    + +LW
Sbjct: 123 AAVQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 167


>gi|260813766|ref|XP_002601587.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
 gi|229286886|gb|EEN57599.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
          Length = 1237

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 101/341 (29%), Gaps = 59/341 (17%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +PR   +  +  + ++      + A P  + S+ +++ + A  G   + AD+   E  + 
Sbjct: 805  IPRVVTAGTVTRRAVEPTWLTASNARPDRVGSE-LKAIVQAPPGYHFIGADVDSQELWIA 863

Query: 390  AWIAGEDW--------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            A + G+                     ++G D++  T +              R   KV 
Sbjct: 864  AIL-GDANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTI-GIS--------RDHAKVF 913

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                 Y  G    + +       + Q     K+   +   +           + P++  +
Sbjct: 914  NYGRIYGAGQPFAERLLLQFNHRMTQEEAGEKAKQMYAATKG--------VRENPDYE-E 964

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            +   G     V  A     + V   W   +      V        +       +      
Sbjct: 965  EGSYGAIIPRVVTAGTVTRRAVEPTWLTASNARPDRVGSELKAIVQAPPGYHFIGADVDS 1024

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYL-----------------NTATSQLMRERT-YGGKL 597
            +++ I         ++   G  S+                    +T  + R+   +    
Sbjct: 1025 QELWIAAILG-DANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTIGISRDHAKFVTSR 1083

Query: 598  TENIVQAISRDILCEGM--KNATKNGYDI----VLTVHDEI 632
               +VQ+ + D L   +       N Y+I     +++HDE+
Sbjct: 1084 VNWVVQSSAVDYLHLMLVCMRWLFNKYNIDGRFCISIHDEV 1124


>gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 672

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           L D E    +    +   G  +D   + +L E+   E  ++++   +     + + +   
Sbjct: 559 LRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDESNRMEQICYEAAGHEV-NLQSPK 617

Query: 240 ALRMYLFLITGIDLVDMSE 258
            L + LF   G++    ++
Sbjct: 618 QLGVVLFEEMGLNPTKKTK 636


>gi|317034839|ref|XP_001401279.2| DNA polymerase gamma [Aspergillus niger CBS 513.88]
          Length = 1135

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 35/246 (14%)

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +   D  +    + L+   +    +  + ++ A +  A+    + S  +S+  R+ G + 
Sbjct: 587 LPHKDGPQARCTNPLAKGYMQYFERGTLSSQYALAKEALEMNASCSYWISARDRIMGQMV 646

Query: 311 FY-----GASRTGRWSGCV--FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            Y     G + +G+    +    PQ +P    +   +  T                    
Sbjct: 647 VYEDEVRGLTSSGKTDHRLGFILPQIIPMGTITRRAVENT-----WLTASNAKGNRVGSE 701

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYV 410
           +++ I A  G   V AD+   E  + A + G+         A          A G D++ 
Sbjct: 702 LKAMIKAPPGYSFVGADVDSQELWI-ASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHS 760

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T  +             R   KV      Y  G K   T+       + +      +T 
Sbjct: 761 RTA-QILGIS--------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATK 811

Query: 471 TFEDWE 476
            +++ +
Sbjct: 812 LYKETK 817


>gi|320037536|gb|EFW19473.1| DNA polymerase gamma [Coccidioides posadasii str. Silveira]
          Length = 1142

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 71/263 (26%), Gaps = 49/263 (18%)

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY-----GASR 316
           K  L +    +L+    L + A   +A          +S+  R+   L  Y     G+SR
Sbjct: 602 KGYLQYFEGGKLSSQFALAKEALEMNASCSY-----WISARDRIMTQLVVYEKDLPGSSR 656

Query: 317 TGRWSGCVFQ-----PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G+            PQ +P    +   +  T                    +++ + A 
Sbjct: 657 DGKSQNPASNLGFILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVKAP 711

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFN 418
            G   V AD+   E  + A + G+                    A G D++  T  K   
Sbjct: 712 PGYVFVGADVDSEELWI-ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILG 769

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTF 472
                     R   KV      Y  G K   T+       +         +   K T   
Sbjct: 770 IS--------RNNAKVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGT 821

Query: 473 EDWEQAESHHLWMQDQYPEFAVK 495
               +  S   + +     F   
Sbjct: 822 RTIRKTISDSPFWRGGTESFVFN 844


>gi|303314467|ref|XP_003067242.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106910|gb|EER25097.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1142

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 71/263 (26%), Gaps = 49/263 (18%)

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY-----GASR 316
           K  L +    +L+    L + A   +A          +S+  R+   L  Y     G+SR
Sbjct: 602 KGYLQYFEGGKLSSQFALAKEALEMNASCSY-----WISARDRIMTQLVVYEKDLPGSSR 656

Query: 317 TGRWSGCVFQ-----PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G+            PQ +P    +   +  T                    +++ + A 
Sbjct: 657 DGKSQNPASNLGFILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVKAP 711

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFN 418
            G   V AD+   E  + A + G+                    A G D++  T  K   
Sbjct: 712 PGYVFVGADVDSEELWI-ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILG 769

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTF 472
                     R   KV      Y  G K   T+       +         +   K T   
Sbjct: 770 IS--------RNNAKVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGT 821

Query: 473 EDWEQAESHHLWMQDQYPEFAVK 495
               +  S   + +     F   
Sbjct: 822 RTIRKTISDSPFWRGGTESFVFN 844


>gi|119174697|ref|XP_001239691.1| hypothetical protein CIMG_09312 [Coccidioides immitis RS]
          Length = 1142

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 71/263 (26%), Gaps = 49/263 (18%)

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY-----GASR 316
           K  L +    +L+    L + A   +A          +S+  R+   L  Y     G+SR
Sbjct: 602 KGYLQYFEGGKLSSQFALAKEALEMNASCSY-----WISARDRIMTQLVVYEKDLPGSSR 656

Query: 317 TGRWSGCVFQ-----PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G+            PQ +P    +   +  T                    +++ + A 
Sbjct: 657 DGKSQNPASNLGFILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVKAP 711

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFN 418
            G   V AD+   E  + A + G+                    A G D++  T  K   
Sbjct: 712 PGYVFVGADVDSEELWI-ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILG 769

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTF 472
                     R   KV      Y  G K   T+       +         +   K T   
Sbjct: 770 IS--------RNNAKVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGT 821

Query: 473 EDWEQAESHHLWMQDQYPEFAVK 495
               +  S   + +     F   
Sbjct: 822 RTIRKTISDSPFWRGGTESFVFN 844


>gi|148675119|gb|EDL07066.1| polymerase (DNA directed), gamma, isoform CRA_b [Mus musculus]
          Length = 1239

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 119/401 (29%), Gaps = 72/401 (17%)

Query: 280  NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             R++S     L  + L   V+       +    G             PQ +     +   
Sbjct: 806  KRISSQMVVWLPRSALPRVVT----RHPSFDEEG-------HYGAILPQVVTAGTITR-- 852

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAG 394
              + ++      + A P  + S+ +++ + A  G  LV AD+   E  +      A  AG
Sbjct: 853  --RAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAG 909

Query: 395  ED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
                    W         G D++  T A              R   K+      Y  G  
Sbjct: 910  MHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKIFNYGRIYGAGQS 960

Query: 447  VFKT--MASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              +   M  +  L  Q+    +Q + + +      +  +   W+  Q      + +    
Sbjct: 961  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 1020

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            + + ++   R         WK             G   +     +  + M    R   + 
Sbjct: 1021 SLQDLRMIRREAS--RKSRWKKWEVASERA--WTGGTESEMFNKLESIAMSDTPRTPVLG 1076

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--K 619
               SR L  S V+G+     T+                 +VQ+ + D L   +       
Sbjct: 1077 CCISRALEPSVVQGE---FITSRVNW-------------VVQSSAVDYLHLMLVAMKWLF 1120

Query: 620  NGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              + I     +++HDE+   V E           + +L+T+
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1161


>gi|87080815|ref|NP_059490.2| DNA polymerase subunit gamma-1 [Mus musculus]
 gi|37537265|dbj|BAC98463.1| polymerase (DNA directed), gamma [Mus musculus]
          Length = 1217

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 119/401 (29%), Gaps = 72/401 (17%)

Query: 280  NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             R++S     L  + L   V+       +    G             PQ +     +   
Sbjct: 784  KRISSQMVVWLPRSALPRVVT----RHPSFDEEG-------HYGAILPQVVTAGTITR-- 830

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAG 394
              + ++      + A P  + S+ +++ + A  G  LV AD+   E  +      A  AG
Sbjct: 831  --RAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAG 887

Query: 395  ED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
                    W         G D++  T A              R   K+      Y  G  
Sbjct: 888  MHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKIFNYGRIYGAGQS 938

Query: 447  VFKT--MASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              +   M  +  L  Q+    +Q + + +      +  +   W+  Q      + +    
Sbjct: 939  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 998

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
            + + ++   R         WK             G   +     +  + M    R   + 
Sbjct: 999  SLQDLRMIRREAS--RKSRWKKWEVASERA--WTGGTESEMFNKLESIAMSDTPRTPVLG 1054

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--K 619
               SR L  S V+G+     T+                 +VQ+ + D L   +       
Sbjct: 1055 CCISRALEPSVVQGE---FITSRVNW-------------VVQSSAVDYLHLMLVAMKWLF 1098

Query: 620  NGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              + I     +++HDE+   V E           + +L+T+
Sbjct: 1099 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1139


>gi|226294174|gb|EEH49594.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb18]
          Length = 1183

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 86/310 (27%), Gaps = 45/310 (14%)

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            +E KK +   V   D  +  +      R +++    +   D  E    + L+   +   
Sbjct: 590 KKELKKFENQAVNPCDMALEKNPLLQNDREHVYFK--LPHKDGPESRCVNPLAKGYLQYF 647

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT---LQFYGASRTGRWSG------CV 324
               + ++   +  A+    + S  +S+  R+       Q      TGR           
Sbjct: 648 EGGTLSSKFDLAKEALEMNASCSYWISARDRITSQMVVYQNDIEKLTGRSLSDPSLKQGF 707

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 708 ILPQVIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSE 762

Query: 385 EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+                    A G D++  T  K             R  
Sbjct: 763 ELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RND 812

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWM 485
            KV      Y  G K   T+       + +       S+  K T       +  S   + 
Sbjct: 813 AKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVASKLYKETKGARTNRKQLSDRPFW 872

Query: 486 QDQYPEFAVK 495
           +     F   
Sbjct: 873 RGGTESFVFN 882


>gi|1129171|emb|CAA88012.1| mitochondrial DNA polymerase gamma [Schizosaccharomyces pombe]
          Length = 1018

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 24/156 (15%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK------------AFANG 405
                 +++ I A +G   V AD+   E  ++A +    +++               + G
Sbjct: 659 NRLGSELKAMIRAPDGYTFVGADVDSEELWIVALMGDSQFRLHGATALGMMTLEGKKSEG 718

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D++  T A              R   KV      Y  G K    +       L+     
Sbjct: 719 TDLHSKTAA-ILGVS--------RDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAK 769

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
             +   +   +  +S    M  +  E  +      +
Sbjct: 770 ELAKKLYASTKGVKSK---MSKRLQEMGLPKLTFWS 802


>gi|63054429|ref|NP_588025.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe 972h-]
 gi|20141418|sp|Q12704|DPOG_SCHPO RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|157310502|emb|CAB76231.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe]
          Length = 1018

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 24/156 (15%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK------------AFANG 405
                 +++ I A +G   V AD+   E  ++A +    +++               + G
Sbjct: 659 NRLGSELKAMIRAPDGYTFVGADVDSEELWIVALMGDSQFRLHGATALGMMTLEGKKSEG 718

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D++  T A              R   KV      Y  G K    +       L+     
Sbjct: 719 TDLHSKTAA-ILGVS--------RDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAK 769

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
             +   +   +  +S    M  +  E  +      +
Sbjct: 770 ELAKKLYASTKGVKSK---MSKRLQEMGLPKLTFWS 802


>gi|47934632|gb|AAT39754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 79

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 24/95 (25%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+ G +   GA  TGR +        +P                              
Sbjct: 6   TGRIHGKVNTCGAV-TGRMTHSSPNLAQVPASHSP-----------------------YG 41

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           +  R      +G  LV  D +G+E R+LA    ++
Sbjct: 42  EDCRELFTVEDGYCLVGMDASGLELRMLAHYMNDE 76


>gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4]
 gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4]
          Length = 678

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 109/670 (16%), Positives = 191/670 (28%), Gaps = 176/670 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDL 57
           M  L  DIET         G+    ++     C++          D          P D 
Sbjct: 1   MKLLISDIET--------NGLLDTVDKFH---CSWT--------VDYFTGEWKAYRPWDF 41

Query: 58  LQYLRD------ETVMCVAHNS-LFERILFKK----TLGIDIPSK--RWICTSVLARTNG 104
            QY++D      E  + V HN   ++    KK      G ++       + T V++R   
Sbjct: 42  EQYIKDLEACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRL-- 99

Query: 105 LPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           L S+LK+    L        K+    +L A   +       Y    A  ++  +   +YC
Sbjct: 100 LHSNLKDTDAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYC 159

Query: 164 KRDVEATRELFKRL------IP-------------------LSDGERDLWLLDQTINDR- 197
           K+DV+ T +LF++        P                   L+  ER+ +  D    +R 
Sbjct: 160 KQDVQVTLKLFEKFMSDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERL 219

Query: 198 -----GYR--IDLDLVL---------------------------------KLQELIAQER 217
                G R  I ++L                                   K   +    +
Sbjct: 220 YAEVAGRRAEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAK 279

Query: 218 KKLDEDIVKLTDGII-------RSSRQTYALRMYL---------FLITGIDLVDMSEGTL 261
           K      + L D           +      +   L         F   G  +VD  + TL
Sbjct: 280 KPTLAKTLYLKDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVD--DDTL 337

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKL--------NTLSEAVSSDGRLRGTLQFYG 313
             ++ H  + +  + L    L      I KL        N     +   G + G +   G
Sbjct: 338 SLVIEHKLVPE--EFLPKVELIKEYLVIQKLIGQLAEGDNAWLR-MDKGGYIHGQVNPNG 394

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  TGR +        +P               + + + +       ++  R        
Sbjct: 395 AV-TGRATHSYPNLAQVPS--------------IRKYKGVECRSLFGAEHHRD-YHTGKP 438

Query: 374 KKLVVADLAGIEARVLAWIA---GEDWKIKAFANGEDIYVT--TYAKAFNTPIDKVSKEQ 428
              V  D +G+E R L        +   I    NG DI+      A     P        
Sbjct: 439 WIQVGVDASGLELRCLGHFMAKFDDGEYINTILNG-DIHTQNQIAA---GLPT------- 487

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K       Y  GA+    +    G + ++    +      E+     S    + D 
Sbjct: 488 RDNAKTFIYGFLYGAGAQKIGEIVGKFGEEGKKAGAEL-IKKFLENTPAIASLREQVADA 546

Query: 489 YPEFAVKDKLIGTACELV-KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                 + K +G   ++  K+ W     G     +        ++Q  G+          
Sbjct: 547 ---LIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVRSPHAALNTLLQSAGA------LICK 597

Query: 548 RLVMRRHKRD 557
           + ++   K  
Sbjct: 598 KWIVEWDKGM 607


>gi|70997278|ref|XP_753389.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|66851025|gb|EAL91351.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|159126884|gb|EDP52000.1| DNA polymerase gamma [Aspergillus fumigatus A1163]
          Length = 1135

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 36/200 (18%)

Query: 317 TGRWSGCV--FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           TG  S  +    PQ +P    +   +  T                    +++ I A  G 
Sbjct: 658 TGEKSNRLGFILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMIKAPPGY 712

Query: 375 KLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPI 421
             V AD+   E  + A + G+         A          A G D++  T  +      
Sbjct: 713 VFVGADVDSQELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-QILGIS- 769

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDW 475
                  R   KV      Y  G K   T+       + +       +   + T      
Sbjct: 770 -------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATNLYRETKGTRTT 822

Query: 476 EQAESHHLWMQDQYPEFAVK 495
            +  S + + +     F   
Sbjct: 823 RRILSENPFWRGGTESFVFN 842


>gi|27476023|ref|NP_775225.1| DNA polymerase1 [Pseudomonas phage PaP3]
 gi|27414453|gb|AAL85539.1| DNA polymerase1 [Pseudomonas phage PaP3]
          Length = 545

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 87/302 (28%), Gaps = 59/302 (19%)

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +    M+E ++        +      L++ R+  +    L L  L E V  +GRL G+  
Sbjct: 190 LTTPKMTETSM------DTVQGDLGKLVMQRMVWAHRRSL-LQGLVEQVKPNGRLEGSAN 242

Query: 311 FYGASRTGRWSGCVFQPQNLPR-----QERSEEILTQTIQALNRGETIADPLGLASDCVR 365
              A+ TGR    V    N+P            +   T  A     T+       ++ VR
Sbjct: 243 PC-ATPTGRMRHRVV--VNIPAARSPFGPEIRGLFQGTPNAGEWKWTVLRRDIGENERVR 299

Query: 366 --------------------SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                                  +  N    V  D AG+E R+LA   G+    +   +G
Sbjct: 300 PHTNIVEVLKGGKWKTVGKYRVYVPENQLIFVGYDGAGLELRMLASYIGDPDYTREVVDG 359

Query: 406 EDIYVT--TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            D++      A     P        R   K    A  Y  G      +      D  +  
Sbjct: 360 -DVHTANQIAA---GLPT-------RDDAKTFIYAFIYGAGDAKIGQIIGGTRADGARLR 408

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           +       F       +  +    Q  E      L     +  K   R    G + + K 
Sbjct: 409 EQ------FLKANPELAKLIERVKQEAERGYLVGL-----DGRKLTMRRSESGEVMVHKA 457

Query: 524 LT 525
           L 
Sbjct: 458 LN 459


>gi|33321977|gb|AAQ06707.1|AF496050_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 80

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 236 RQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                L + LF   G+ ++  ++     +++ +      +    D++  R  S   +   
Sbjct: 1   NSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPXVSDILEYRQISKIQST-Y 59

Query: 292 LNTLSEAVSS-DGRLRGTLQF 311
           +  L + +   DGR+      
Sbjct: 60  VKGLLDVIDERDGRIHTRYLQ 80


>gi|134081963|emb|CAK97229.1| unnamed protein product [Aspergillus niger]
          Length = 1108

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 35/246 (14%)

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +   D  +    + L+   +    +  + ++ A +  A+    + S  +S+  R+ G + 
Sbjct: 560 LPHKDGPQARCTNPLAKGYMQYFERGTLSSQYALAKEALEMNASCSYWISARDRIMGQMV 619

Query: 311 FY-----GASRTGRWSGCV--FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            Y     G + +G+    +    PQ +P    +   +  T                    
Sbjct: 620 VYEDEVRGLTSSGKTDHRLGFILPQIIPMGTITRRAVENT-----WLTASNAKGNRVGSE 674

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYV 410
           +++ I A  G   V AD+   E  + A + G+         A          A G D++ 
Sbjct: 675 LKAMIKAPPGYSFVGADVDSQELWI-ASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHS 733

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T  +             R   KV      Y  G K   T+       + +      +T 
Sbjct: 734 RTA-QILGIS--------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATK 784

Query: 471 TFEDWE 476
            +++ +
Sbjct: 785 LYKETK 790


>gi|74195213|dbj|BAE28339.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 78/263 (29%), Gaps = 43/263 (16%)

Query: 280  NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             R++S     L  + L   V+       +    G             PQ +     +   
Sbjct: 784  KRISSQMVVWLPRSALPRVVT----RHPSFDEEG-------HYGAILPQVVTAGTITR-- 830

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAG 394
              + ++      + A P  + S+ +++ + A  G  LV AD+   E  +      A  AG
Sbjct: 831  --RAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAG 887

Query: 395  ED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
                    W         G D++  T A              R   K+      Y  G  
Sbjct: 888  MHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKIFNYGRIYGAGQS 938

Query: 447  VFKT--MASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              +   M  +  L  Q+    +Q + + +      +  +   W+  Q      + +    
Sbjct: 939  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 998

Query: 502  ACELVKKAWRAKHQGVLQLWKDL 524
            + + ++   R   +       ++
Sbjct: 999  SLQDLRMIRREASRKSRWKKWEV 1021


>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
           helicase-like [Meleagris gallopavo]
          Length = 1569

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 108/363 (29%), Gaps = 68/363 (18%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
            P  L + L DET+                  G+ I    W         +     LK+ 
Sbjct: 201 FPKGLKRLLEDETIKK---------------AGVGIEGDHWK------LMSDFEVKLKSF 239

Query: 113 CLALNFSEHLTKMEEGKALIAR----FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
               + +    K +E  +L       F K  +      C         +    Y   D  
Sbjct: 240 VELADVANEKLKCKEVWSLNGLVKHLFGKQLLKDKSIRCGNWEKFPLDEEQKLYAATDAY 299

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           A   ++++L  ++  +R L+         G R D      L + + +    L E++V L 
Sbjct: 300 AGLIIYQKLKNMNSADRKLY---------GERRD----DALSDDVKERMTSLAEEMVYLA 346

Query: 229 DGIIRSSRQTYALR---MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
             I  SS Q   L+     L  I+  ++  +         S S + +          A S
Sbjct: 347 SKISDSSGQLRNLQRSAEILADIS-ENVKALGSTLFAGSSSPSVLERSCGATPTKPEAKS 405

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            +   +   + E    D +L G       A+  G W G + Q +        E+  T   
Sbjct: 406 MNVEAQKAEMPEF---DKKLEGDFNICSDATLAGLWEGEIDQGEAEGGNAVVEDGATAA- 461

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                                 C  A++    +  D    E ++L   A E+   KA   
Sbjct: 462 ---------------------GCKDAADRDDFMSLDYNEQELQILERQAAEEVVNKAVPE 500

Query: 405 GED 407
            E 
Sbjct: 501 EEC 503


>gi|198473302|ref|XP_001356241.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
 gi|198139395|gb|EAL33303.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
          Length = 1153

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 22/139 (15%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                 +RS + A  G +LV AD+   E  +      A+  G+             + AN
Sbjct: 791 NRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGQHGATPLGWMTLSGSKAN 850

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T                R   KV+  A  Y  G +  +T+             
Sbjct: 851 GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQQFAETLLRQFNPTFSASEA 901

Query: 465 NVKSTSTFEDWEQAESHHL 483
             K+   F   +    + L
Sbjct: 902 KAKAMKMFAITKGKRVYRL 920


>gi|195164742|ref|XP_002023205.1| GL21087 [Drosophila persimilis]
 gi|194105290|gb|EDW27333.1| GL21087 [Drosophila persimilis]
          Length = 1153

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 22/139 (15%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                 +RS + A  G +LV AD+   E  +      A+  G+             + AN
Sbjct: 791 NRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGQHGATPLGWMTLSGSKAN 850

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T                R   KV+  A  Y  G +  +T+             
Sbjct: 851 GSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQQFAETLLRQFNPTFSASEA 901

Query: 465 NVKSTSTFEDWEQAESHHL 483
             K+   F   +    + L
Sbjct: 902 KAKAMKMFAITKGKRVYRL 920


>gi|238695631|ref|YP_002922658.1| P44 [Xanthomonas phage phiL7]
 gi|190343998|gb|ACE75784.1| P44 [Xanthomonas phage phiL7]
          Length = 330

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 95/330 (28%), Gaps = 91/330 (27%)

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI----------- 421
           G K+V +D   +E  V A +      +     G D++V    +A+               
Sbjct: 6   GGKIVQSDFKSLEIYVQAALTQCIQLVADLIAGLDMHVLRAEQAWGRAEGRDYAYILKAA 65

Query: 422 -DKVSKEQ------RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            D+   E       R+  KV      Y  G       A+  G+ ++              
Sbjct: 66  QDENHPEHAKWSELRSNAKVFSFQRAYGAGVAKI---AATTGMSVED------------- 109

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                        E + +A   ++  ++   +D+T+     ++E
Sbjct: 110 ----------------------------VEALIEAEAERYPELISYIEDITDY----IKE 137

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
               ++R   +     M+      H + P  +   YS+            S+    +++ 
Sbjct: 138 NRVPTSRYCQHPQIPGMQCQLGRSHYITPDGKMYSYSESPSPEFVAKRPASRGGTPQSFS 197

Query: 595 GKLTEN-IVQAISRDILCEGMKNATKNGYD---------IVLTVHDEIVSETPDTPYFSV 644
               +N +VQ    +     M  A +  Y          +V TVHD I  +         
Sbjct: 198 PTEIKNYVVQGTGGEWTKAAMYLAVRAFYRRGNFGGMALLVNTVHDAIYLDASAETCHDA 257

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             +               L+A  +EA  Y 
Sbjct: 258 AAM---------------LEAAMFEASTYM 272


>gi|301768381|ref|XP_002919612.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Ailuropoda melanoleuca]
          Length = 1227

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 104/362 (28%), Gaps = 61/362 (16%)

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR+   + Q         +  I  + ++      + A P  + S+ +++ + A  G  LV
Sbjct: 829  GRYGAILPQVV------TAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLV 881

Query: 378  VADLAGIEARVLAWIAGED-----------WKIKAFAN--GEDIYVTTYAKAFNTPIDKV 424
             AD+   E  + A +               W         G D++  T A          
Sbjct: 882  GADVDSQELWIAAVLGDAHFARMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS---- 936

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                R   K+      Y  G               ++         T ++  +       
Sbjct: 937  ----REHAKIFNYGRIYGAG-----------QPFAERLLMQFNHRLTRQEAAEKAQQMYA 981

Query: 485  MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +      + + D+      EL     R +       W  L +      +       ++  
Sbjct: 982  VTKGLRRYRLSDEGEWLVRELHLPVDRTEDG-----WVSLQDLRKIQREASRKSRWKKWE 1036

Query: 545  NVP-RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL---TEN 600
             V  R  M   + ++   L S   +  SD           +  L      G  +      
Sbjct: 1037 VVAERAWMGGTESEMFNKLES---IAMSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNW 1093

Query: 601  IVQAISRDILCEGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLM 651
            +VQ+ + D L   +         + I     +++HDE+   V E           + +L+
Sbjct: 1094 VVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLL 1153

Query: 652  TK 653
            T+
Sbjct: 1154 TR 1155


>gi|149690747|ref|XP_001503097.1| PREDICTED: similar to DNA polymerase subunit gamma-1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Equus
            caballus]
          Length = 1219

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 106/362 (29%), Gaps = 61/362 (16%)

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR+   + Q         +  I  + ++      + A P  + S+ +++ + A  G  LV
Sbjct: 815  GRYGAILPQVV------TAGTITRRAVEPTWLTASNARPDRVGSE-MKAMVQAPPGYVLV 867

Query: 378  VADLAGIEARVL-----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKV 424
             AD+   E  +      A  AG        W         G D++  T A          
Sbjct: 868  GADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS---- 922

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                R   K+      Y  G               ++         T ++  +       
Sbjct: 923  ----REHAKIFNYGRIYGAG-----------QPFAERLLMQFNHRLTRQEAAEKAQQMYA 967

Query: 485  MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +      + + D+      EL     R +       W  L +      +     + ++  
Sbjct: 968  VTKGLRRYRLSDEGEWLVRELDLPVDRTEDG-----WVSLQDLRKIQREASRKSNWKKWE 1022

Query: 545  NVP-RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL---TEN 600
             V  R  M   + ++   L S   +  SD           +  L      G  +      
Sbjct: 1023 VVAERAWMGGTESEMFNKLES---IATSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNW 1079

Query: 601  IVQAISRDILCEGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLM 651
            +VQ+ + D L   +         + I     +++HDE+   V E           + +L+
Sbjct: 1080 VVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLL 1139

Query: 652  TK 653
            T+
Sbjct: 1140 TR 1141


>gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 203

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 73/194 (37%), Gaps = 36/194 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  Y ++  + L  ++  +    L     Q+    +L   L D
Sbjct: 20  LAIDTET--------MGLNLYRDK--LCLLQFSNGNGDAHLVHFLNQNYNAPNLKNLLSD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SVLARTNGLPSSLKNACLALNFSE 120
           +    + H + F+    KK LGID+  +   CT   S L RT      LK+ C  L    
Sbjct: 70  KERCKIFHFARFDLAAIKKYLGIDL--ENIFCTKISSKLVRTYTESHGLKDICREL-LGV 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           +++K ++             D+   D              EY  +DV    +L + LI +
Sbjct: 127 NISKQQQSSYW-------GADNLSSD------------QQEYAAKDVLYLHKLREHLIEM 167

Query: 181 SDGERDLWLLDQTI 194
              E   + L Q I
Sbjct: 168 LVKENR-FELAQDI 180


>gi|330868873|gb|EGH03582.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 198

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A ++G++  ++ +A+G D+Y       F        + +R   K + L+  Y    +  
Sbjct: 1   MAALSGDEKLLELYADG-DLYKQVANDIF------EGEGRRKEAKRLFLSYAYGMKNRHL 53

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWE 476
              A   G D +      K    FE+W+
Sbjct: 54  IDAAFGYGADRRATKTFFKQFGKFEEWK 81


>gi|262212121|gb|ACY35677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212127|gb|ACY35680.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +  ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELFLPSPNQVMAGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
                    R + K +  A  Y  G +                       Q + +     
Sbjct: 69  S--------RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRQAYIEATDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|239613015|gb|EEQ90002.1| DNA polymerase gamma [Ajellomyces dermatitidis ER-3]
 gi|327356950|gb|EGE85807.1| DNA polymerase gamma [Ajellomyces dermatitidis ATCC 18188]
          Length = 1146

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 34/192 (17%)

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               PQ +P    +   +  T                    +++ + A  G   V AD+ 
Sbjct: 667 GYILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVTAPPGYVFVGADVD 721

Query: 383 GIEARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             E  + A + G+                    A G D++  T  K             R
Sbjct: 722 SEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------R 771

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHL 483
              KV      Y  G K   T+       + +       ++  K T       +  S + 
Sbjct: 772 NDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEHETKQVAAKLYKETKGVRTNRKILSDNP 831

Query: 484 WMQDQYPEFAVK 495
           + +     F   
Sbjct: 832 FWRGGTESFVFN 843


>gi|261189615|ref|XP_002621218.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
 gi|239591454|gb|EEQ74035.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
          Length = 1126

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 34/192 (17%)

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               PQ +P    +   +  T                    +++ + A  G   V AD+ 
Sbjct: 647 GYILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVTAPPGYVFVGADVD 701

Query: 383 GIEARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             E  + A + G+                    A G D++  T  K             R
Sbjct: 702 SEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------R 751

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHL 483
              KV      Y  G K   T+       + +       ++  K T       +  S + 
Sbjct: 752 NDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEHETKQVAAKLYKETKGVRTNRKILSDNP 811

Query: 484 WMQDQYPEFAVK 495
           + +     F   
Sbjct: 812 FWRGGTESFVFN 823


>gi|1297340|gb|AAA98977.1| DNA polymerase gamma [Mus musculus]
          Length = 1238

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 111/351 (31%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 819  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPTGYVLVGADVDSQELWIA 877

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A +AG        W         G D++  T A           +  R   K+  
Sbjct: 878  AVLGDAHLAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------RIHREHAKIFN 928

Query: 437  LALGYQGGAKVFKT--MASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G    +   M  +  L  Q+    +Q + + +      +  +   W+  Q   
Sbjct: 929  YGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNL 988

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++   R         WK             G   +     +  + M
Sbjct: 989  PVDRTEDGWVSLQDLRMIRREAS--RKSRWKKWEVASERA--WTGGTESEMFNKLESIAM 1044

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                R   +    SR L  S V+G+     T+                 +VQ+ + D L 
Sbjct: 1045 SDTPRTPVLGCCISRALEPSVVQGE---FITSRVNW-------------VVQSSAVDYLH 1088

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1089 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1139


>gi|313905697|ref|ZP_07839058.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
 gi|313469521|gb|EFR64862.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
          Length = 66

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675
           M ++P W   + L+A+GYE   Y+K
Sbjct: 41  MGRSPDWIPDILLRADGYETNFYKK 65


>gi|116283963|gb|AAH61472.1| Polg protein [Mus musculus]
          Length = 1013

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 40/205 (19%)

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R++S     L  + L   V+       +    G             PQ +     +   
Sbjct: 784 KRISSQMVVWLPRSALPRVVT----RHPSFDEEG-------HYGAILPQVVTAGTITR-- 830

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAG 394
             + ++      + A P  + S+ +++ + A  G  LV AD+   E  +      A  AG
Sbjct: 831 --RAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAG 887

Query: 395 ED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
                   W         G D++  T A              R   K+      Y  G  
Sbjct: 888 MHGCTAFGWMTLQGRKSRGTDLHSKTAATV-GIS--------REHAKIFNYGRIYGAGQS 938

Query: 447 VFKT--MASHCGLDLQQFSQNVKST 469
             +   M  +  L  Q+ ++  +  
Sbjct: 939 FAERLLMQFNHRLTRQEAAEKAQQM 963


>gi|325091155|gb|EGC44465.1| DNA polymerase gamma [Ajellomyces capsulatus H88]
          Length = 1146

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 67/242 (27%), Gaps = 36/242 (14%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LAK+ +    + S     +   +S+ V     +        ++ T +    + Q   +P 
Sbjct: 618 LAKEALEMNASCSYWISARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQI--IPM 675

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
              +   +  T                    +++ + A  G   V AD+   E  + A +
Sbjct: 676 GTITRRAVENT-----WLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASL 729

Query: 393 AGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            G+                    + G D++  T +              R   KV     
Sbjct: 730 VGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTAS-ILGIS--------RNDAKVFNYGR 780

Query: 440 GYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            Y  G K   T+       + +       ++  K T       +  S + + +     F 
Sbjct: 781 IYGAGLKFAATLLRQFNPSMSEQETKRVAAKLYKETKGTRTNRKILSDNPFWRGGTESFV 840

Query: 494 VK 495
             
Sbjct: 841 FN 842


>gi|196012971|ref|XP_002116347.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
 gi|190580938|gb|EDV21017.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
          Length = 1146

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 86/299 (28%), Gaps = 43/299 (14%)

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILK----LNTL 295
           L  Y   I G+D   +       +   S +++   K      + S GS I K    L  +
Sbjct: 668 LGPYTIDIPGVDFYKIPHKDGSHLRCGSPLSKDYLKQYEDGTITSFGSDIAKRTVELKLM 727

Query: 296 SEA-VSSDGRLRGTLQFY----GASRTGRWSGCVFQPQN----LPRQERSEEILTQTIQA 346
                ++  R+R     Y      + + R        Q     LP    +  +  + ++A
Sbjct: 728 LSYWKNAHDRVRNQFVVYYKHDEIADSIRNHSQFKPLQKYGAILPPVAPAGTVTRRAVEA 787

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG-----------E 395
                + A    + S+ +++ I A  G   V AD+   E  + A  A             
Sbjct: 788 TWLTASNAKANRVGSE-LKAMIRAPPGYHFVGADVDSQELWIAALYADARFGRTHGCTAI 846

Query: 396 DWK--IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            W       + G D++  T                R   K       Y  G    + +  
Sbjct: 847 GWMTLQGKKSQGTDLHSKTAETV-GIS--------RDQAKTFNYGRIYGAGLNYAQRLMR 897

Query: 454 HCGLDL------QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                +       +      ST     ++        +Q   P+  + D  I T    +
Sbjct: 898 QFNPSMTLEDASDKAKILYASTKGITIYKLTRKGKKILQKLDPDTILDDDWIDTTGHEI 956


>gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
 gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
          Length = 232

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 32/173 (18%)

Query: 11  RSP---QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
            S      +   G+  + E ++  +  Y+ D E V          +   +   L D +V+
Sbjct: 61  YSKIIGVDIETTGLD-FLEDSIRLIAVYSEDFEYV-------GEDL-EAVKTLLTDPSVL 111

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            V H+S F+ + F K  GID+ +            N LP          +    L K+  
Sbjct: 112 KVFHHSQFD-VCFLKKAGIDVCTFTDTFIMNQILNN-LP--------VFDSLSRLAKVYL 161

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           GK+L         D+   D T        Q    YC  D + T EL++ +  L
Sbjct: 162 GKSLDKSL--QHADNWQSDLT--------QEHYAYCLDDAKTTYELYQHMFDL 204


>gi|225684515|gb|EEH22799.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb03]
          Length = 1220

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 53/212 (25%), Gaps = 40/212 (18%)

Query: 309 LQFYGASRTGRWSG------CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            Q      TGR             PQ +P    +   +  T                   
Sbjct: 723 YQNDIEKLTGRSLSDPSLKQGFILPQVIPMGTITRRAVENT-----WLTASNAKANRVGS 777

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW-------------KIKAFANGEDIY 409
            +++ + A  G   V AD+   E  + A + G+                    A G D++
Sbjct: 778 ELKAMVRAPPGYVFVGADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLH 836

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FS 463
             T  K             R   KV      Y  G K   T+       + +       S
Sbjct: 837 SKTA-KILGIS--------RNDAKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVAS 887

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
           +  K T       +  S   + +     F   
Sbjct: 888 KLYKETKGARTNRKQLSDRPFWRGGTESFVFN 919


>gi|167521656|ref|XP_001745166.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776124|gb|EDQ89744.1| predicted protein [Monosiga brevicollis MX1]
          Length = 882

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 83/268 (30%), Gaps = 35/268 (13%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS------EGTLKSILSHSNITQL--AKDLILNRLAS 284
            +      L    F +      D +      +  LK + +   ++    A++ + N LA 
Sbjct: 441 EAPNDATHLTHNYFKLPNSRGPDSTCGNPFGKDYLKFMKNGLLVSDDPQAREALDNTLAC 500

Query: 285 SGSAILKLNTLSEAVSSDGRLRGT--LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           S    +++    + V  D R      L   G S   +          +P       +  +
Sbjct: 501 SYWVSVRVRANKQLVVMDDRRERERFLTLNGRSTPKQLDSDEPIGAIIPMVLPFGTVTRR 560

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            ++      +   P  + S+ +++ I A  G KLV AD+   E  + + I G+    +  
Sbjct: 561 AVEKTWMTASNPKPQRIGSE-LKAMIQAPPGYKLVGADVDSQELWIASVI-GDQRLGREH 618

Query: 403 --------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
                          +G D++  T  K             R   K+      Y  G    
Sbjct: 619 GATAMGWMTLQGTKNDGTDMHSMTA-KILGI--------NRDEAKIFNYGRIYGAGKAFA 669

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            ++       + +     K+   + + +
Sbjct: 670 ASLLQKFNPTITEREAQAKAEELYLETK 697


>gi|119478758|ref|XP_001259434.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
 gi|119407588|gb|EAW17537.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
          Length = 1109

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 36/200 (18%)

Query: 317 TGRWSGCV--FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           TG  S  +    PQ +P    +   +  T                    +++ I A  G 
Sbjct: 632 TGEKSNRLGFILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMIKAPPGY 686

Query: 375 KLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPI 421
             V AD+   E  + A + G+         A          A G D++  T         
Sbjct: 687 VFVGADVDSQELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGIS- 743

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDW 475
                  R   KV      Y  G K   T+       + +       ++  + T      
Sbjct: 744 -------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATKLYRETKGTRTT 796

Query: 476 EQAESHHLWMQDQYPEFAVK 495
            +  S + + +     F   
Sbjct: 797 RRILSENPFWRGGTESFVFN 816


>gi|301605305|ref|XP_002932281.1| PREDICTED: DNA polymerase subunit gamma-1-like [Xenopus (Silurana)
            tropicalis]
          Length = 1197

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 54/299 (18%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDW--------KIKAFAN 404
                  +++ +    G  ++ AD+   E  + A       AG                + 
Sbjct: 835  DRVGSELKAMVQVPPGYHIIGADVDSQELWIAAILGEAHFAGIHGCTAFGWMTLQGKKST 894

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++  T +              R   KV      Y  G               ++   
Sbjct: 895  GTDLHSKTASTV-GIS--------REHAKVFNYGRIYGAG-----------QAFAERLLM 934

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR-AKHQGVLQLWKD 523
                  T E   +       +      + +  +      EL     R  ++   LQ  + 
Sbjct: 935  QFNHRLTQEQAAEKAKQMYAVTKGIRRYILSKEGEWLVEELGIPVERGEENSVSLQDLRK 994

Query: 524  LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
            + +  +   +   ++ +RR+        +   +   I +  S +         C      
Sbjct: 995  IQKEASAKSRRKWNLVSRRI-WTGGTESQMFNKLETIAMSPSPKT----PVLGCH----I 1045

Query: 584  TSQLMRERTYGGKLTENI---VQAISRD---ILCEGMKNATKNGYDI----VLTVHDEI 632
            +  L      G  +T  I   VQ+ + D   ++   MK   +  YDI     +++HDE+
Sbjct: 1046 SRALEPAAVKGEFITSRINWVVQSSAVDYLHLMLVAMKWLFEA-YDIDGRFCISIHDEV 1103


>gi|326424982|ref|YP_004286204.1| putative DNA polymerase [Pseudomonas phage phi15]
 gi|325048386|emb|CBZ41999.1| putative DNA polymerase [Pseudomonas phage phi15]
          Length = 722

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 66/246 (26%), Gaps = 37/246 (15%)

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG------------TLKSILSHSNIT 271
           I    + I  S      ++  L            +G            T+   +  + IT
Sbjct: 320 IYTPIEHITFSPTSRDHIQKVLKDAGWEPTEFTDKGAPIVDDETLEGVTVDDPVKQAAIT 379

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            + + L++ +     +   K   L    + DG + G++   GA  TGR +        +P
Sbjct: 380 LIQRYLMIQKRIGQLAEGKK-AWLLYCETEDGFIHGSINPNGAG-TGRATHSHPNMGQVP 437

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
             +       + +        +     +                 V  D +G+E R L  
Sbjct: 438 SAKSPYGPECRELFGAAYASHLPGWEAVVQ---------------VGRDASGLELRCLGH 482

Query: 392 IAG--EDWKIKAFANGEDIY--VTTYAKAFNTPIDKVSKEQ----RAIGKVMELALGYQG 443
                +           D++      A     P+     EQ    R   K    A  Y  
Sbjct: 483 FGAKFDGGAYVEQVLNGDVHWANAVAAGIAKDPVRIKGDEQHDRWRDNAKTFIYAFLYGA 542

Query: 444 GAKVFK 449
           G     
Sbjct: 543 GNGKIG 548


>gi|262342193|gb|ACY54607.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 18/165 (10%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKA--FANGEDIYVTTYAKAFNTPI 421
           RS    S+    V +D +G++ R L   ++  D    A   ANG DI+     + + T  
Sbjct: 13  RSLFKPSDNHLQVGSDASGLKLRCLGHYLSRYDGGKFAEEVANG-DIHTALA-EVYGTD- 69

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWE 476
                  R  GK +   L   GG       A        +  Q ++         F D  
Sbjct: 70  -------RKSGKGVTYCLICGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            A                  +L G     +    ++    + +LW
Sbjct: 123 AAIQERAKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2]
          Length = 701

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 72/249 (28%), Gaps = 47/249 (18%)

Query: 229 DGIIRSSRQTYALRMYLFLITGID-------LVDMSEGTLKSILSH------SNITQLAK 275
           + ++ +      +   L     +        L  + E TL     +       ++  +A+
Sbjct: 307 EHVVFNPGSRQHIAKVLQERGWVPTEFTETGLPKVDEETLAEAAENLPEQYRDDVKLIAE 366

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            L+L +     +     N   +   + G + G++   GA  TGR +        +P    
Sbjct: 367 YLLLVKRLGQIAEGD--NAWLKL-CNKGFIHGSVNPNGAV-TGRATHAFPNLAQVPSGTA 422

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA-- 393
                 + +  +                +R  ++       V  D +G+E R L      
Sbjct: 423 LYGPQCRALFGVEH--------------IRKTVVGWAAAVQVGTDASGLELRCLGHFMAR 468

Query: 394 -GEDWKIKAFANGEDIYVTTYAKAFNTPI-----------DKVSKEQRAIGKVMELALGY 441
             +   I+    G DI+          P            ++  K  R   K    A  Y
Sbjct: 469 FDDGQYIRDILEG-DIHWVNVEALGLVPKGTKRIKEGPGHEEHDKF-RGYAKTFIYAFLY 526

Query: 442 QGGAKVFKT 450
             G +   +
Sbjct: 527 GAGDEKIGS 535


>gi|295670549|ref|XP_002795822.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
 gi|226284907|gb|EEH40473.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
          Length = 1142

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 45/165 (27%), Gaps = 28/165 (16%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 667 ILPQVIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSE 721

Query: 385 EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+                    A G D++  T  K             R  
Sbjct: 722 ELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RND 771

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            KV      Y  G K   T+       + +      +   +E+ +
Sbjct: 772 AKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKQVAAKLYEETK 816


>gi|311875216|emb|CBX44475.1| DNA polymerase A, part A [Erwinia phage phiEa1H]
 gi|311875337|emb|CBX45078.1| DNA polymerase A, part A [Erwinia phage phiEa100]
          Length = 621

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   IAS GKK++  D AG+E RVLA    +    +   +G DI+            +K
Sbjct: 550 LRDLFIASKGKKVLGCDGAGLELRVLAHFMNDPEYSEVVLHG-DIHT--------HNQEK 600

Query: 424 VSKEQRAIGKVMELALGY 441
                R + K       Y
Sbjct: 601 AGLPLRDMAKTFNTMGVY 618


>gi|302902991|ref|XP_003048764.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
 gi|256729698|gb|EEU43051.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
          Length = 1143

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 28/150 (18%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 669 ILPQIIPMGTITRRAVENT-----WLTASNAKKNRVGSELKAMVKAPKGYCFVGADVDSQ 723

Query: 385 EARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+         A          + G D++  T +              R  
Sbjct: 724 ELWI-ASLVGDATFKLHGGNAVGFMTLEGTKSQGTDLHSRTAS-ILGIS--------RNN 773

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            KV      Y  G K   T+      DL +
Sbjct: 774 AKVFNYGRIYGAGLKFAATLLRQFNPDLSE 803


>gi|198433586|ref|XP_002125927.1| PREDICTED: similar to GK24652 [Ciona intestinalis]
          Length = 1122

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 114/398 (28%), Gaps = 59/398 (14%)

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             +LS  N     + L +N++ S   +  K  LN +   V++D R R              
Sbjct: 660  GLLSSYNPLDALRCLEINKITSYWRSSQKRVLNQIVVEVANDKR-RDCNNTPNEFNNKDM 718

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
            +     PQ +     S   + +              L      +++ + A  G   V AD
Sbjct: 719  AYSAIVPQAIVCGAVSRRAVERV-----WLTASNPQLDRIGSELKAMVQAPPGFCFVGAD 773

Query: 381  LAGIEARVLAWI----AGEDWKIKAF---------ANGEDIYVTTYAKAFNTPIDKVSKE 427
            +   E  + + +    + ++    A            G D++ TT A             
Sbjct: 774  VDSQELWIASLLGDASSAKEHGCTALSWMTLRGNKKEGTDLHSTTAASI-GIS------- 825

Query: 428  QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH----- 482
             R   KV      Y  G K           DL +     K    +   +    +      
Sbjct: 826  -RDQAKVFNYGRMYGAGKKSSLRSLMQFNKDLSREECIAKVNKLYGITKGEVQYKLSRDA 884

Query: 483  -LWMQDQYPEFAVKDKLIGTAC-ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
               +Q    E   +    G A  + V       ++      +       C  +  G I +
Sbjct: 885  LWIIQKTGIELNSEAMTSGYASFDDVTLIQNVANEASNYTARINRNDLVCGRRWHGGIES 944

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                 V  +   +  +   +    SR L    V G+     T                  
Sbjct: 945  HMFNKVEEISNSKTPKTPALDCKISRALEPGKVNGN---FVTTRMNW------------- 988

Query: 601  IVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632
            +VQ+ + D L   + +        K     VL++HDE+
Sbjct: 989  VVQSSAVDYLHLLLVSMRWLIEKYKLDCRFVLSIHDEV 1026


>gi|195119063|ref|XP_002004051.1| GI19730 [Drosophila mojavensis]
 gi|193914626|gb|EDW13493.1| GI19730 [Drosophila mojavensis]
          Length = 1143

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 27/178 (15%)

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S     PQ +     +   +  T                    +RS + A  G KLV 
Sbjct: 748 RTSYGAILPQVVVAGTLTRRAMEST-----WMTASNSRANRIGSELRSMVQAPPGYKLVG 802

Query: 379 ADLAGIEARVLAWIA-----GEDW--------KIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           AD+   E  + + +      GE             + +NG D++  T          KV 
Sbjct: 803 ADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGSDMHSITA---------KVV 853

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
              R   KV+  A  Y  G +  +T+       L       K+   F   +    + L
Sbjct: 854 GISRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMFAATKGKRVYRL 911



 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 87/286 (30%), Gaps = 28/286 (9%)

Query: 42  VKLWDRTEQSAMP---SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           V+  D            +L+     E  + V HN  ++R   ++   I+    R++ T  
Sbjct: 225 VEPIDVDSNERPHYTLDELIPLGHKEPSLVVGHNVSYDRARIREQYLIEDTKTRFVDTMS 284

Query: 99  LARTNG---------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP----- 144
           L              L S    A   L++    + +     +   +C G   S       
Sbjct: 285 LHICVSGVTSYQRAMLKSKKDPAVEDLDWLAQSS-LNNLVDVHRLYCGGEPLSKEPRNIF 343

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG---YRI 201
            + T     Q +Q    YC  DVEAT  +  +L PL        +    + + G     +
Sbjct: 344 VEGTLEQVRQQFQSLVNYCAGDVEATHRILGKLYPLYAERFPHPVTLAGMLEMGTAYLPV 403

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS-----RQTYALRMYLFLITG-IDLVD 255
           + +   +         + L  +           +      + Y   ++L+     +  + 
Sbjct: 404 NSNW-ERYIRDAQLAYEDLSIEAKYHLGRRAEEACALLHDEKYRKNLWLWDEDWSVQALK 462

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           + +   +  LS   + +   D+   RL      +     L  +   
Sbjct: 463 LKQMPKRKQLSTVQLPEQGLDVEQLRLQRKFQYLYNQRALLPSRRP 508


>gi|156539953|ref|XP_001602202.1| PREDICTED: similar to AT02241p, partial [Nasonia vitripennis]
          Length = 1031

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 99/300 (33%), Gaps = 50/300 (16%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY-AKAF-- 417
              +R  I A +G  ++ AD+   E     WIA       AF     I+ +T  +     
Sbjct: 683 GSELRGIINAPSGYSIIGADVDSQEL----WIASIIG--DAFKKDIKIHGSTPFSWMTLI 736

Query: 418 -----NTPIDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
                 T +  V+ +     R   KV+  A  Y  G K  + +       +      +KS
Sbjct: 737 GNKSDGTDMHSVTAKAIGINRDQAKVLNYARIYGAGQKFAERLLKQFNPSITDKEAALKS 796

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
              +   +  + + L  + QY    + +KL  T+ E  K         + Q+ K L +  
Sbjct: 797 KHIYLMTKGKKYYRL--KKQYVSENLSNKLY-TSYEAFK---------ISQIHKKLRDEV 844

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               +  G   +    ++  +  +       +    SR L Y                  
Sbjct: 845 FEKGKWIGGSESVMFNSLEEIAEQNEPSTPFLNCRLSRALEY-----------------E 887

Query: 589 RERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           +   +       +VQ+ + D   ++   M+   K+   + L+ HDE+    P    ++  
Sbjct: 888 KNEKFLPTKINWVVQSGAVDFLHLILVTMRWLMKDKARLCLSFHDEVRYLVPSEYKYNAA 947



 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           +   + D++     D  +   MP            + + HN  F+R+  K+   ++  + 
Sbjct: 181 IFESSVDNKEQ--IDVDKFQQMPK-----------IIIGHNVSFDRVRVKEQYWLNPSAT 227

Query: 92  RWICTSVLARTN-GLPSSLKNACLALNFSEHLTKMEEGKALIA-------RFCKGSIDSP 143
           +++ T  L     GL S  +    + N  +    ++   +L +        +        
Sbjct: 228 KFLDTMALHICISGLSSYQRAILKSTNSKDEHEHLKSISSLNSLSDIHKFYYGFNLNKQG 287

Query: 144 PYDCTRANHVQAWQLFGE---YCKRDVEATRELFKRLIPL 180
                        + F E   YC  DV AT ++FK++ P+
Sbjct: 288 RDIFMNGEIQDIKKQFNESMLYCASDVVATHKIFKKMFPI 327


>gi|239908264|ref|YP_002955005.1| hypothetical protein DMR_36280 [Desulfovibrio magneticus RS-1]
 gi|239798130|dbj|BAH77119.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 1507

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 350  GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
            G +    L   +   R   + S G  ++  D+   E  +++ ++ + + +    +G+DIY
Sbjct: 1253 GRSGYRILSTLNKKFRLLFLPSEGHVILAFDMKHFEPTIISSLSNDTYALGLINSGKDIY 1312

Query: 410  VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
                       +++     R+ GKV+   +   GG
Sbjct: 1313 TEVAMSISG-ALNEERFNDRSFGKVL-FNIAINGG 1345


>gi|67515517|ref|XP_657644.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|40746203|gb|EAA65359.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|259489774|tpe|CBF90322.1| TPA: DNA polymerase gamma (AFU_orthologue; AFUA_5G12640)
           [Aspergillus nidulans FGSC A4]
          Length = 1134

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 74/261 (28%), Gaps = 47/261 (18%)

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG-------- 313
           K  L +     L+    L + A   +A          +S+  R+ G L  Y         
Sbjct: 598 KGYLQYFERGTLSSQYALAKEALEMNASCSY-----WISARDRIMGQLVVYENDVRPASP 652

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           +S+ G        PQ +P    +   +  T                    +++ I A  G
Sbjct: 653 SSKNGDQKLGYILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMIKAPPG 707

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTP 420
              V AD+   E  + A + G+         A          A G D++  T  K     
Sbjct: 708 YAFVGADVDSQELWI-ASLIGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGIS 765

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFED 474
                   R   KV      Y  G K   T+       + +       S+  K T   + 
Sbjct: 766 --------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERETQEVASKLYKETKGAKT 817

Query: 475 WEQAESHHLWMQDQYPEFAVK 495
             +  S + + +     F   
Sbjct: 818 TRRLLSDNPFWRGGTESFVFN 838


>gi|121713882|ref|XP_001274552.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
 gi|119402705|gb|EAW13126.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
          Length = 1134

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 50/190 (26%), Gaps = 34/190 (17%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ I A  G   V AD+   
Sbjct: 668 ILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMIKAPPGYVFVGADVDSQ 722

Query: 385 EARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+         A          A G D++  T                R  
Sbjct: 723 ELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGIS--------RND 772

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWM 485
            KV      Y  G K   T+       + +       S+  K T       +  S + + 
Sbjct: 773 AKVFNYGRIYGAGLKFAATLLRQFNPSMSEKETQEVASKLYKETKGARTSRRILSENPFW 832

Query: 486 QDQYPEFAVK 495
           +     F   
Sbjct: 833 RGGTESFVFN 842


>gi|316967875|gb|EFV52241.1| putative ubiquitin--protein ligase [Trichinella spiralis]
          Length = 1284

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 22/100 (22%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG-----------EDW--KIKAFAN 404
                 +R  IIA  G   V AD+   E  + A  +              W       + 
Sbjct: 773 DRIGSELRGLIIAPKGYCFVGADVDSQELWIAALFSDSYGVKIHGSTPISWILLKGDKSK 832

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           G D +  T  +             R+  K++     Y  G
Sbjct: 833 GTDQHSLTAKEM-GVS--------RSQAKILNYGRIYGAG 863


>gi|109082314|ref|XP_001092360.1| PREDICTED: DNA polymerase subunit gamma-1 [Macaca mulatta]
          Length = 1228

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 28/213 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 830  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 888

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   KV  
Sbjct: 889  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKVFN 939

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 940  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAITKGLRWYRLSDEGEWLVRELHL 999

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
               + +    + + ++K  R   +   +   ++
Sbjct: 1000 PVDRTEGGWISLQDLRKVQREAARKSHRKKWEV 1032


>gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01]
 gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 906

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/424 (14%), Positives = 114/424 (26%), Gaps = 77/424 (18%)

Query: 254 VDMSEGTLKSILSHSNITQLAKDLIL-NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
             ++E +    +      ++AK   L +R  +  ++          +  DGRL      +
Sbjct: 504 PKLTESSY-DTIEGELGQKIAKYYTLMHRRRTIENSKDDEKGWLNQIRPDGRLSAGAMVF 562

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR +       N+P                           +  + +R+  I   
Sbjct: 563 G-TSTGRMTQYGI--VNVPSGA-----------------------AVYGEPMRAVWICEE 596

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID---------- 422
           G  ++  D    +  +L    G++   KA   G++      +  F    D          
Sbjct: 597 GTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE------SVEFTKQDDGRYYCKHLDK 650

Query: 423 ----KVSKEQRAIGK-----------VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
               +  K  R   +              L   Y G  K    +      D +   +  K
Sbjct: 651 YLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIYFGLNKEEDIVRCRETQDEELLHEITK 710

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                ++   A       +             G    L K+ +  +   + +L   L E 
Sbjct: 711 GRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGA---LTKQTYFVRLPKIKKLLDRLEED 767

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
           F    +    +  +  A      ++     +    P    L Y+ +  +    N   +  
Sbjct: 768 FKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL-LNYTLMGSEAQVQNEGINLA 826

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            RE T       N                    G   V + HDE+  E P      V  +
Sbjct: 827 NRELTERKLTVLN--------------GRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEI 872

Query: 648 CSLM 651
              M
Sbjct: 873 IDRM 876


>gi|195397702|ref|XP_002057467.1| GJ18089 [Drosophila virilis]
 gi|194141121|gb|EDW57540.1| GJ18089 [Drosophila virilis]
          Length = 1150

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 59/206 (28%), Gaps = 48/206 (23%)

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R +     PQ +     +   +  T                    +RS + A  G KLV 
Sbjct: 753 RMAYGAIVPQIVVAGTLTRRAMEST-----WMTASNSRANRIGSELRSMVQAPPGYKLVG 807

Query: 379 ADLAGIEARVLAWIA-----GEDW--------KIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           AD+   E  + + +      GE             + +NG D++  T          KV 
Sbjct: 808 ADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGSDMHSITA---------KVV 858

Query: 426 KEQRAIGKVMELALGYQGG---------------------AKVFKTMASHCGLDLQQFSQ 464
              R   KV+  A  Y  G                     AK  K  A+  G  + +  +
Sbjct: 859 GISRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMFAATKGKRVYRLRE 918

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYP 490
                     +   E+  L +Q   P
Sbjct: 919 EFHDEQEDRPYSSYEAKRLALQRNRP 944



 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 84/286 (29%), Gaps = 28/286 (9%)

Query: 42  VKLWDRTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           V+  D  +       L + +     E  + V HN  ++R   ++   I+    R++ T  
Sbjct: 226 VEPIDVDQNERPHYTLDELIPLGCGEPGLVVGHNVSYDRARLREQYLIEDTGTRFVDTMS 285

Query: 99  LARTN-GLPSSLKNACLALNFSEHLTKM-EEGKALI------ARFCKGSIDSPP-----Y 145
           L     G+ S  +    +            E  AL         +C G   S        
Sbjct: 286 LHMCVSGITSYQRAMLKSKKEPAEEDLSWLEQSALNNLVDVHRLYCGGEPLSKEPRNIFV 345

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---ID 202
           + T     Q +Q    YC  DVEAT  +  +L P+        +    + + G     ++
Sbjct: 346 EGTLEQVRQQFQSLVNYCAGDVEATHRILTKLYPMFAARFPHPVTLAGMLEMGSAYLPVN 405

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS-----RQTYALRMYLFLITGIDLVDMS 257
            +   +         + L  +           +      + Y   ++L+      +  + 
Sbjct: 406 SNW-ERYIRDAQLTYEDLSIEAKYHLGRRAEEACALLHDEQYRQHLWLWDEDW-SVQSLK 463

Query: 258 EGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSS 301
              L        +  L ++L     RL      +     L  A   
Sbjct: 464 LKQLPKRKQLPTVHLLEQELNPEQRRLQRKFQHLYDQRALLPARRP 509


>gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 909

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/424 (14%), Positives = 114/424 (26%), Gaps = 77/424 (18%)

Query: 254 VDMSEGTLKSILSHSNITQLAKDLIL-NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
             ++E +    +      ++AK   L +R  +  ++          +  DGRL      +
Sbjct: 507 PKLTESSY-DTIEGELGQKIAKYYTLMHRRRTIENSKDDEKGWLNQIRPDGRLSAGAMVF 565

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR +       N+P                           +  + +R+  I   
Sbjct: 566 G-TSTGRMTQYGI--VNVPSGA-----------------------AVYGEPMRAVWICEE 599

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID---------- 422
           G  ++  D    +  +L    G++   KA   G++      +  F    D          
Sbjct: 600 GTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE------SVEFTKQDDGRYYCKHLDK 653

Query: 423 ----KVSKEQRAIGK-----------VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
               +  K  R   +              L   Y G  K    +      D +   +  K
Sbjct: 654 YLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIYFGLNKEEDIVRCRETQDEELLHEITK 713

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                ++   A       +             G    L K+ +  +   + +L   L E 
Sbjct: 714 GRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGA---LTKQTYFVRLPKIKKLLDRLEED 770

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
           F    +    +  +  A      ++     +    P    L Y+ +  +    N   +  
Sbjct: 771 FKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL-LNYTLMGSEAQVQNEGINLA 829

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            RE T       N                    G   V + HDE+  E P      V  +
Sbjct: 830 NRELTERKLTVLN--------------GRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEI 875

Query: 648 CSLM 651
              M
Sbjct: 876 IDRM 879


>gi|47934610|gb|AAT39743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 96

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 24/113 (21%)

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                + ++ +  E VS + R+ G +   GA  TGR +        +P            
Sbjct: 2   LGKERVAQVESWLEFVSDEHRVHGKVITNGAV-TGRMTHHSPNMAQVPSSSSP------- 53

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                R C     GK LV AD + +E R+LA    ++
Sbjct: 54  ----------------WGHECRDCWTVDEGKILVGADASSLELRMLAHYMKDE 90


>gi|167821768|ref|ZP_02453448.1| 38L [Burkholderia pseudomallei 91]
          Length = 808

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 30/173 (17%)

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           +  +    +  + + +N+ +L KDL      ++     +   +   V  DG +   +  +
Sbjct: 396 IEALGNRDIPFLKTLANVAKLGKDLGTYY-ITTDEKTGQQKGMLTLVGDDGIIHQKIN-H 453

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ T R+S      QN+                           G     V+S  ++  
Sbjct: 454 TSTVTARFSEQDPNLQNVS--------------------------GAGKSQVKSVFVSRW 487

Query: 373 --GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
               ++V +D   +E  + A + G    I     G D++    ++      + 
Sbjct: 488 LADGQVVQSDFTSLEIFIQAILTGCKQLIDDLRAGLDMHCVRVSQKEGITYED 540


>gi|255953429|ref|XP_002567467.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589178|emb|CAP95318.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1142

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 48/190 (25%), Gaps = 34/190 (17%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ I A  G   V AD+   
Sbjct: 668 ILPQVIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMIKAPPGYSFVGADVDSQ 722

Query: 385 EARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+         A          A G D++  + +              R  
Sbjct: 723 ELWI-ASLVGDASFQIHGGNAIGFMCLEGSKAEGTDLHSRSAS-ILGIS--------RND 772

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDL------QQFSQNVKSTSTFEDWEQAESHHLWM 485
            KV      Y  G K   T+       L      +      K T       +  S   + 
Sbjct: 773 AKVFNYGRIYGAGVKFAATLLRQFNPSLTEKQTQETAKNLYKETKGTRTSRRLLSETPFW 832

Query: 486 QDQYPEFAVK 495
           +     F   
Sbjct: 833 RGGTESFVFN 842


>gi|119622451|gb|EAX02046.1| polymerase (DNA directed), gamma, isoform CRA_b [Homo sapiens]
          Length = 1168

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 99/354 (27%), Gaps = 57/354 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 950

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 951  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1010

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         WK          + G                
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSD 1068

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1069 IPRTPVLGCCISRALEPSAVQEEFMTSRVN-----W-------------VVQSSAVDYLH 1110

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTKNPS 656
              +         + I     +++HDE+   V E           + +L+T    
Sbjct: 1111 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTSKIP 1164


>gi|258567122|ref|XP_002584305.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
 gi|237905751|gb|EEP80152.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
          Length = 1140

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 48/190 (25%), Gaps = 34/190 (17%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 670 ILPQIIPMGTITRRAVENT-----WLTASNAKANRVGSELKAMVKAPPGYAFVGADVDSE 724

Query: 385 EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+                    A G D++  T  K             R  
Sbjct: 725 ELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNN 774

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWM 485
            KV      Y  G K   T+       + +       S   + T       +  S   + 
Sbjct: 775 AKVFNYGRIYGAGLKFAATLLRQFNPSISEEETKLIASNLYRETKGTRTMRKMISESPFW 834

Query: 486 QDQYPEFAVK 495
           +     F   
Sbjct: 835 RGGTESFVFN 844


>gi|296204096|ref|XP_002749184.1| PREDICTED: DNA polymerase subunit gamma-1 [Callithrix jacchus]
          Length = 1229

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 29/218 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 831  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 889

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   KV  
Sbjct: 890  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKVFN 940

Query: 437  LALGYQGGAKVFKTMASHCGLDL------QQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
                Y  G    + +       L      ++  Q    T     +  +E     +++ + 
Sbjct: 941  YGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSEEGEWLVRELHL 1000

Query: 491  EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                 +    +  +L K    A  +   + W+ + E  
Sbjct: 1001 PVDRIEGGWISLQDLRKVQREASRKSRWKKWEVVAERA 1038


>gi|116207922|ref|XP_001229770.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
 gi|88183851|gb|EAQ91319.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
          Length = 1082

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 26/164 (15%)

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
           Q    S +G   G    PQ +P    +   +  T                    +++ + 
Sbjct: 664 QTSEESTSGEPVGGFILPQIIPMGTITRRAVENT-----WLTASNAKKNRVGSELKAMVR 718

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKI---KAF---------ANGEDIYVTTYAKAF 417
           A  G   V AD+   E  + + I    ++I    A          A G D++  T +   
Sbjct: 719 APPGYVFVGADVDSEELWIASVIGDSTFRIHGGNAIGFMTLEGTKAAGTDLHSRTAS-IL 777

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
                      R   K+      Y  G K    +       L +
Sbjct: 778 GIT--------RNDAKIFNYGRIYGAGLKFAAQLLRQFNPSLSE 813


>gi|327284750|ref|XP_003227099.1| PREDICTED: DNA polymerase subunit gamma-1-like [Anolis carolinensis]
          Length = 1165

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 85/299 (28%), Gaps = 53/299 (17%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                  +++ + A  G  LV AD+   E  +      A  AG                ++
Sbjct: 798  DRVGSELKAMVQAPPGYHLVGADVDSQELWIAAVLGEAHFAGLHGCTAFGWMTLQGKKSS 857

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--AKVFKTMASHCGLDLQQF 462
            G D++  T +              R   KV      Y  G        M  +  L  QQ 
Sbjct: 858  GTDLHSKTASTV-GIS--------REHAKVFNYGRIYGAGQPFAERLLMQFNHRLTEQQA 908

Query: 463  SQNVK---STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            S+  +   + +             W+  +      + +    + + V+K  R   +   +
Sbjct: 909  SEKARQMYAATKGIRRCHLSEEGEWLVKELGIPVDRAENGSVSLQDVRKIHREVGKRSQK 968

Query: 520  LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               D+               +     +  + M        +    SR L  + VKG+   
Sbjct: 969  KKWDVVRQRV----WSNGTESEMFNKLESIAMSDSPCTPVLGCRISRALEPAAVKGE--- 1021

Query: 580  LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--KNGYDI----VLTVHDEI 632
                         +       +VQ+ + D L   +         Y I     +++HDE+
Sbjct: 1022 -------------FVTSRVNWVVQSSAVDYLHLMLVAMKWLFEEYSIDGRFCISIHDEV 1067


>gi|68478473|ref|XP_716738.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
 gi|68478594|ref|XP_716679.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438355|gb|EAK97687.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438419|gb|EAK97750.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
          Length = 1228

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 85/304 (27%), Gaps = 49/304 (16%)

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           D +I +LT+      +    L     + T   L+   +  +   + H N        IL+
Sbjct: 592 DNEIARLTEKKYVQPK----LTEEELMETRDALLTKGKSYVLFKVPHPNGPSSRCTHILS 647

Query: 281 RLA----------SSGSAILKLNTLSEAVSSD----GRLRGTL---QFYGASR---TGRW 320
           +L           S      K+  L+   S       R++         G ++   T + 
Sbjct: 648 KLYVRNFEDGTLTSEYDYATKILNLNNEASYWLGNRNRIKDQFVVYNQQGKNKFFDTIKK 707

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S        +     +   +T+                     ++S + A  G   V AD
Sbjct: 708 SKEHSSMGIIIPNLATMGTITRRATENTWLTASNAKKNRIGSELKSLVEAPKGYCFVGAD 767

Query: 381 LAGIEARVLAWIAGED-----------WKIKAFANGE--DIYVTTYAKAFNTPIDKVSKE 427
           +   E  + A + G+            W        +  D++  T +             
Sbjct: 768 VDSEELWI-ASLVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTAS-ILGIS------- 818

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDL--QQFSQNVKSTSTFEDWEQAESHHLWM 485
            R   KV      Y  G K    +      ++  ++  +  +          A S +L  
Sbjct: 819 -RNDAKVFNYGRIYGAGVKFATRLLKQFNANITDEEADKVARQLYDSTKGRTAVSKYLPS 877

Query: 486 QDQY 489
           +  Y
Sbjct: 878 RIYY 881


>gi|312381749|gb|EFR27423.1| hypothetical protein AND_05878 [Anopheles darlingi]
          Length = 1735

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 27/129 (20%)

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK--AFANGE------------ 406
               +R+ + A  G ++V AD+   E  + + + G+       A   G             
Sbjct: 967  GSELRAMVQAPIGYRIVGADVDSQELWIASVL-GDAGVASCGALHGGTPFGWMTLSGTKA 1025

Query: 407  ---DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
               D++  T A              R   KV+  A  Y  G +  + +       + Q  
Sbjct: 1026 TRTDMHSVTAAAV-GIS--------RDHAKVINYARIYGAGQQFAERLLKQFNPTISQAE 1076

Query: 464  QNVKSTSTF 472
               K+T  F
Sbjct: 1077 ARSKATKMF 1085


>gi|256084395|ref|XP_002578415.1| DNA polymerase gamma [Schistosoma mansoni]
 gi|238663787|emb|CAZ34653.1| DNA polymerase gamma, putative [Schistosoma mansoni]
          Length = 870

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 106/352 (30%), Gaps = 73/352 (20%)

Query: 283 ASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-- 337
            S+ +  +KL     L++ +  D R+  T     + R             LP+   ++  
Sbjct: 448 ISANTDTIKLKPVMGLADRLLHD-RVHATFWQSYSKRIKSQMAIWLPHDQLPKNVLNDQS 506

Query: 338 ------------------EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
                              +  + ++ L    + AD   L S+ +++ + +  G   V A
Sbjct: 507 YNCKANYGAILPQVITCGTVSRRAVEPLWLTASNADENRLGSE-IKAMVQSPPGYVFVGA 565

Query: 380 DLAGIEARVLA----------------WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           D+   E  + A                W+  +  K+     G D++     +        
Sbjct: 566 DVDSQEMWIAALIGDAGVGFQGSTPYGWMTLQGNKLD----GTDLHTKIAKEM-GI---- 616

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF--------KTMASHCGLDLQQFSQNVKSTSTFEDW 475
               +R+  KV+  +  Y  G +                  L  +Q  Q  K   T  D 
Sbjct: 617 ----KRSESKVLNYSRLYGSGIEFASHLLAKFCNITVKQASLKAKQLFQITKGRRTIVDS 672

Query: 476 EQAESHHLWMQDQY---PEFAVKDKLIGTACELVKKA-------WRAKHQGVLQLWKDLT 525
             ++        ++    E AV ++L   A     +         RA +  +++    L 
Sbjct: 673 FPSDDGTSISTSKWQGGSESAVFNQLESIARSPEPRTPFLNAQLTRALNPKLVKD-DFLP 731

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                VVQ         +  + R ++ + K    + +     L Y   K   
Sbjct: 732 SRVNWVVQSSAVDYLHCMLVLMRWLINKFKIPARLCISIHDELRYICPKSHI 783


>gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4]
 gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4]
          Length = 678

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 108/670 (16%), Positives = 189/670 (28%), Gaps = 176/670 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDL 57
           M  L  DIET         G+    ++     CA+          D          P D 
Sbjct: 1   MKLLLSDIET--------NGLLDTVDKFH---CAWT--------VDYFTGEWKAYRPWDF 41

Query: 58  LQYLRD------ETVMCVAHNS-LFERILFKK----TLGIDIPSK--RWICTSVLARTNG 104
            QY++D      E  + V HN   ++    KK      G ++       + T V++R   
Sbjct: 42  EQYIKDLEACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRL-- 99

Query: 105 LPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           L S+LK+    L        K+    +L A   +       Y    A  ++  +   +YC
Sbjct: 100 LHSNLKDTDAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYC 159

Query: 164 KRDVEATRELFK------RLIP-------------------LSDGERDLWLLDQTINDR- 197
           K+DV+ T +LF+         P                   L+  ER+ +  D    +R 
Sbjct: 160 KQDVQVTLKLFEKFMGDTWYFPNGVDGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERL 219

Query: 198 -----GYR--IDLDLVL---------------------------------KLQELIAQER 217
                G R  I ++L                                   K   +    +
Sbjct: 220 YAEVAGRRAEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAK 279

Query: 218 KKLDEDIVKLTDGII-------RSSRQTYALRMYL---------FLITGIDLVDMSEGTL 261
           +      + L D           +      +   L         F   G  +VD  + TL
Sbjct: 280 RPTLAKTLYLKDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVD--DDTL 337

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKL--------NTLSEAVSSDGRLRGTLQFYG 313
             ++ H  I +  + +    L      I KL        N     +   G + G +   G
Sbjct: 338 SLVIEHKLIPE--EFIPKVELIKEYLVIQKLIGQLAEGDNAWLR-MDKGGYIHGQVNPNG 394

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  TGR +        +P   + + +  +++                             
Sbjct: 395 AV-TGRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHLDYHT---------------GKP 438

Query: 374 KKLVVADLAGIEARVLAWIA---GEDWKIKAFANGEDIYVT--TYAKAFNTPIDKVSKEQ 428
              V  D +G+E R L        +   I    NG DI+      A     P        
Sbjct: 439 WIQVGVDASGLELRCLGHFMAKFDDGEYINTILNG-DIHTQNQIAA---GLPT------- 487

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K       Y  GA+    +    G + ++    +      E+     S    + D 
Sbjct: 488 RDNAKTFIYGFLYGAGAQKIGEIVGKFGEEGKKAGAEL-IKKFLENTPAIASLREQVADA 546

Query: 489 YPEFAVKDKLIGTACELV-KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                 + K +G   ++  K+ W     G     +        ++Q  G+          
Sbjct: 547 ---LIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVRSPHAALNTLLQSAGA------LICK 597

Query: 548 RLVMRRHKRD 557
           + ++   K  
Sbjct: 598 KWIVEWDKGM 607


>gi|2494178|sp|Q92076|DPOG1_CHICK RecName: Full=DNA polymerase subunit gamma-1; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1405384|gb|AAC60018.1| DNA polymerase gamma [Gallus gallus]
          Length = 647

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 94/324 (29%), Gaps = 57/324 (17%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDW--------KIKAFAN 404
                 +++ +    G  LV AD+   E  +      A  AG                ++
Sbjct: 280 DRVGSELKAMVQVPPGYSLVGADVDSQELWIAAVLGEAHFAGMHGCTAFGWMTLQGKKSD 339

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T A              R   KV      Y  G    + +       L Q   
Sbjct: 340 GTDLHSKTAATV-GIS--------REHAKVFNYGRIYGAGQPFAERLLMQFNHRLTQQQA 390

Query: 465 NVKSTSTFEDWEQAESHHL-----WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG-VL 518
             K+   +   +     HL     W+  +      K +    + + V+K  R   +    
Sbjct: 391 REKAQQMYAVTKGIRRFHLSEEGEWLVKELELAVDKAEDGTVSAQDVQKIQREAMRKSRR 450

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +   D+             ++ R  A      M      + +       ++   +     
Sbjct: 451 KKKWDV-------------VAHRMWAGGTESEMFNKLESIALSASPQTPVLGCHISRALE 497

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--KNGYDI----VLTVHDEI 632
               A ++     +        +VQ+ + D L   + +       YDI     +++HDE+
Sbjct: 498 P---AVAKGEFLTS----RVNWVVQSSAVDYLHLMLVSMKWLFEEYDINGRFCISIHDEV 550

Query: 633 ---VSETPDTPYFSVGTLCSLMTK 653
              V E           + +L+T+
Sbjct: 551 RYLVQEQDRYRAALALQITNLLTR 574


>gi|46122277|ref|XP_385692.1| hypothetical protein FG05516.1 [Gibberella zeae PH-1]
          Length = 1124

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 113/403 (28%), Gaps = 72/403 (17%)

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---------------KGSIDSPP 144
           A  + L  +++   + L  S    K   G+     +                KG+    P
Sbjct: 412 ATYHTLSDAVQERLIGLTESALEMKDSPGEYENDPWMQQLDWSGQEIKMAKGKGNEPPRP 471

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRG--YRI 201
               +   +  W     +   D      +  R+ PL      D + L    N  G  +R+
Sbjct: 472 VARQKKPGMPKWY-KDLFQSSDSPINITVRTRVAPLLLKMSWDGYPLF-WSNQYGWTFRV 529

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
                 K    +A E K  +++I    D      +        L    G      +    
Sbjct: 530 PRAEAAKYTAKLAVECKFDEKEIKLRDDHAHAYFK--------LPHKDG-PTARCTNPMA 580

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS-RTGRW 320
           K  LS+     L+ +    + A   +A          +S+  R++  +  Y    R  R 
Sbjct: 581 KGYLSYFESGMLSSEYTYAKEALEMNASCSY-----WISARDRIKSQMVVYDQDLRVMRG 635

Query: 321 SGCV---------FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
           S              PQ +P    +   +  T                    +++ + A 
Sbjct: 636 STRGKPKKDKPGFILPQIIPMGTITRRAVENT-----WLTASNAKKNRVGSELKAMVKAP 690

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFN 418
            G   V AD+   E  + A + G+         A          + G D++  T +    
Sbjct: 691 RGYCFVGADVDSEELWI-ASLVGDATFKLHGGNAVGFMTLEGTKSAGTDLHSRTAS-ILG 748

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
                     R   K+      Y  G K   T+      +L +
Sbjct: 749 IT--------RNNAKIFNYGRIYGAGLKFAATLLRQFNPNLSE 783


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 23/123 (18%)

Query: 6   IDIET----RSPQPLPKVGVWAYAEQAVITLCAYAW-----DDEPVKLWDRTEQ-----S 51
           +D+ET    RS + +   GV+       IT   Y       D  PV +   T +      
Sbjct: 28  VDVETTGLGRSDRVIS-AGVYQLDPDGEITDHWYTLVNPQRDPGPVWIHGLTSEVLAGAP 86

Query: 52  AMPS---DLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL 105
             P    +  + LRD   + VAHN+LF+  +  +     G+  P ++ +CT VLAR   L
Sbjct: 87  TFPEVAAEFAERLRDR--VLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVLARDLRL 144

Query: 106 PSS 108
           P  
Sbjct: 145 PLP 147


>gi|288964713|gb|ADC79470.1| hypothetical protein [Staphylococcus aureus]
          Length = 369

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 42/245 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
           S +   L  Y+ +   ++ +     +    L    +  +   ++        S  ++   
Sbjct: 53  SNEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHSDKIEHLF 112

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L ++++   RL   L   G +RT R +   F  Q LP+                    
Sbjct: 113 DRLDQSLNGTNRLYTQLSLIG-TRTHRITTKRFNVQGLPK-------------------- 151

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      V+  I+ S  KK+   D    E  V A++  ++  I    + E +Y   
Sbjct: 152 ----------LVQQTILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDAL 201

Query: 413 YAKAFNTPIDKVSKEQRAIGK---VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                      +SKE+R   K   +     G +  +  FK       ++  Q     K  
Sbjct: 202 ------LRDLSLSKEKRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKV 255

Query: 470 STFED 474
             F++
Sbjct: 256 IEFKE 260


>gi|158289252|ref|XP_311006.4| AGAP000139-PA [Anopheles gambiae str. PEST]
 gi|157018965|gb|EAA06413.4| AGAP000139-PA [Anopheles gambiae str. PEST]
          Length = 1135

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 88/261 (33%), Gaps = 35/261 (13%)

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
              +   D     + + LS   + + +++++     ++   +     LS   ++  R+RG
Sbjct: 662 FLKLPHKDGGGHRVGNPLSKDFLAKFSENVLAGDGRAAERVVEIARMLSYWRNNRDRIRG 721

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            L         R          +P+      +  + ++      + A    + S+ +R+ 
Sbjct: 722 QLVV-----WCRPGEPDPIGAIIPQVVVCGTLTRRAMEPTWMTASNAQRERVGSE-LRAM 775

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGED-----------WKI----KAFANGEDIYVTT 412
           + A  G +LV AD+   E  + + + G+            W      KA     D++  T
Sbjct: 776 VQAPPGYRLVGADVDSQELWIASVL-GDAGTGLHGGTPFGWMTLSGTKATRT--DMHSVT 832

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                           R   KV+  A  Y  G +  + +       L       K+T  F
Sbjct: 833 AQAV-GIS--------RDHAKVLNYARIYGAGQQFAERLLKQFNPTLTGAEARSKATKMF 883

Query: 473 EDWEQAESHHL--WMQDQYPE 491
              +   ++ L   ++DQYP 
Sbjct: 884 TLTKGRRTYRLREELRDQYPT 904


>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
 gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 12/179 (6%)

Query: 4   LFIDIETRS--PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L  D+ET +     L    + +Y E+  +    Y   D  V L         P  L   L
Sbjct: 16  LAKDLETCAVFAVDLEADSMHSYQEKVCLLQFTYH--DTTVLLDPLAAGDLAP--LKPVL 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D ++  + H + ++     +    DI  +    T + ++  G         L   F   
Sbjct: 72  ADSSIRKIFHAADYDIRCLARDF--DIEIRGLFDTMIASQFLGEEKVGLADVLGKYFDVT 129

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD----VEATRELFKR 176
           L K  +      R     +     + TR        L     ++D    VE    L ++
Sbjct: 130 LDKRFQRADWSKRPLSPEMCHYAAEDTRHLEKLVAILEPALKEKDRLWWVEEEFRLLEQ 188


>gi|171686350|ref|XP_001908116.1| hypothetical protein [Podospora anserina S mat+]
 gi|161087386|gb|ABX56854.1| mitochondrial DNA polymerase gamma catalytic subunit [Podospora
           anserina]
 gi|170943136|emb|CAP68789.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1155

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 40/150 (26%), Gaps = 28/150 (18%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 665 ILPQVIPMGTVTRRAVENT-----WLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSE 719

Query: 385 EARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+         A          A G D++  T A              R  
Sbjct: 720 ELWI-ASVVGDATFKLHGGNAIGFMTLEGTKAQGTDLHSRTAA-ILGIT--------RND 769

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            KV      Y  G K    +       L +
Sbjct: 770 AKVFNYGRIYGAGLKFAGQLLRQFNPSLSE 799


>gi|195031476|ref|XP_001988346.1| GH10618 [Drosophila grimshawi]
 gi|193904346|gb|EDW03213.1| GH10618 [Drosophila grimshawi]
          Length = 1147

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 22/125 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIA-----GEDW--------KIKAFANGED 407
              +R+ + A  G KLV AD+   E  + + +      GE             + +NG D
Sbjct: 787 GSELRAMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGSD 846

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T          KV    R   KV+  A  Y  G +  +T+       L       K
Sbjct: 847 MHSITA---------KVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPSLSATEAKAK 897

Query: 468 STSTF 472
           +   F
Sbjct: 898 AMKMF 902



 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 82/271 (30%), Gaps = 28/271 (10%)

Query: 42  VKLWDRTEQSA---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           V+  D  +      M  +L+        + V HN  ++R    +   ++    R++ T  
Sbjct: 223 VEPIDVAQSDRPHYMLDELIPLGSGAPGLVVGHNVSYDRARLLEQYLLEDTGTRFVDTMS 282

Query: 99  LARTNG---------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP----- 144
           L              L S  + A   L++ E  + +     +   +C G   S       
Sbjct: 283 LHMCVSGVTSYQRAMLKSKKEPAAEDLDWLEQSS-LNSLVDVHRLYCGGEPLSKEPRNIF 341

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR---I 201
            + T     Q +Q    YC  DVEAT  +   L PL        +    + + G     +
Sbjct: 342 VEGTLEQVRQQFQSLVNYCAGDVEATHRILTVLYPLYAERFPHPVTLAGMLEMGSAYLPV 401

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS-----RQTYALRMYLFLITG-IDLVD 255
           + +   +         + L+ +           +      + Y   ++L+     +  + 
Sbjct: 402 NSNW-ERYIRDAQLAYEDLNIEAKYHLGRRAEEACALLHDEQYRQHLWLWDEDWSVQQLK 460

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           + +   +  L    +    +     R     
Sbjct: 461 LKQLPKRKQLPTVPLQDERQLNAEQRRLLQK 491


>gi|310789378|gb|EFQ24911.1| DNA polymerase family A [Glomerella graminicola M1.001]
          Length = 1148

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 28/152 (18%)

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               PQ +P    +   +  T                    ++S + A  G   V AD+ 
Sbjct: 671 GYILPQIIPMGTITRRAVENT-----WLTASNAKKNRVGSELKSMVKAPPGYSFVGADVD 725

Query: 383 GIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             E  + A + G+         A          A G D++  T +              R
Sbjct: 726 SEELWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------R 775

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
              KV      Y  G K    +      +L +
Sbjct: 776 NDAKVFNYGRIYGAGLKFAGQLLRQFNPNLSE 807


>gi|115387355|ref|XP_001211183.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
 gi|114195267|gb|EAU36967.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
          Length = 1131

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 52/191 (27%), Gaps = 36/191 (18%)

Query: 325 FQPQNLPRQERSEEILTQT-IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
             PQ +P    +   +  T + A N  E            +++ I A  G   V AD+  
Sbjct: 662 ILPQIIPMGTITRRAVENTWLTASNAKE------NRVGSELKAMIKAPPGYVFVGADVDS 715

Query: 384 IEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            E  + A + G+         A          A G D++  T                R 
Sbjct: 716 QELWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGIS--------RN 765

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLW 484
             KV      Y  G K   T+       + +       S   K T       +  S   +
Sbjct: 766 DAKVFNYGRIYGAGVKFAATLLRQFNPSMTERETQEVASNLYKETKGTRTTRRILSEGPF 825

Query: 485 MQDQYPEFAVK 495
            +     F   
Sbjct: 826 WRGGTESFVFN 836


>gi|262212093|gb|ACY35663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
             + V        K +  A  Y  G +                       Q + + +   
Sbjct: 69  SRELV--------KTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAVLAKRWM 169


>gi|254571647|ref|XP_002492933.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|238032731|emb|CAY70754.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|328353057|emb|CCA39455.1| DNA polymerase gamma 1 [Pichia pastoris CBS 7435]
          Length = 1012

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 43/173 (24%), Gaps = 28/173 (16%)

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               PQ +P    +   +  T                    ++S I A  G   V AD+ 
Sbjct: 611 GYILPQIIPMGTITRRAVENT-----WLTASNAKKNRLGSELKSLIEAPKGYCFVGADVD 665

Query: 383 GIEARVLAWIAGED-------------WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             E  + A + G+                      G D++  T  K             R
Sbjct: 666 SEELWI-ASLIGDSVFKIHGGTAIGWMTLEGTKNEGTDLHSKTA-KILGIS--------R 715

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
              K+      Y  G K   T+       L        + + +   +     +
Sbjct: 716 NEAKIFNYGRIYGAGIKFTTTLLKKFNPALSDAEAKATANALYTATKGISGRY 768


>gi|2494181|sp|Q01941|DPOG_PICPA RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1236527|gb|AAB17118.1| DNA polymerase gamma [Pichia pastoris]
          Length = 1012

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 43/173 (24%), Gaps = 28/173 (16%)

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
               PQ +P    +   +  T                    ++S I A  G   V AD+ 
Sbjct: 611 GYILPQIIPMGTITRRAVENT-----WLTASNAKKNRLGSELKSLIEAPKGYCFVGADVD 665

Query: 383 GIEARVLAWIAGED-------------WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             E  + A + G+                      G D++  T  K             R
Sbjct: 666 SEELWI-ASLIGDSVFKIHGGTAIGWMTLEGTKNEGTDLHSKTA-KILGIS--------R 715

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
              K+      Y  G K   T+       L        + + +   +     +
Sbjct: 716 NEAKIFNYGRIYGAGIKFTTTLLKKFNPALSDAEAKATANALYTATKGISGRY 768


>gi|311347844|gb|ADP90867.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 100/351 (28%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 950

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 951  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1010

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         WK          + G                
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSD 1068

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1069 IPRTPVLGCCISRALEPSAVQEEFMTSRVN-----W-------------VVQSSAVDYLH 1110

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1111 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1161


>gi|311347878|gb|ADP90884.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 950

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 951  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1010

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
               + +    + + ++K  R         WK          + G
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGG 1052


>gi|262212075|gb|ACY35654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212091|gb|ACY35662.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212181|gb|ACY35707.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342239|gb|ACY54630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
             + V        K +  A  Y  G +                       Q + + +   
Sbjct: 69  SRELV--------KTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|114658821|ref|XP_523149.2| PREDICTED: polymerase (DNA directed), gamma [Pan troglodytes]
          Length = 1236

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 100/351 (28%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 838  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 896

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 897  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 947

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 948  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1007

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         WK          + G                
Sbjct: 1008 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSD 1065

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1066 IPRTPVLGCCISRALEPSAVQEEFMTSRVN-----W-------------VVQSSAVDYLH 1107

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1108 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1158


>gi|21779923|gb|AAM77583.1|AF497906_1 polymerase (DNA directed), gamma [Homo sapiens]
          Length = 1240

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 100/351 (28%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 842  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 900

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 901  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 951

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 952  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1011

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         WK          + G                
Sbjct: 1012 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSD 1069

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1070 IPRTPVLGCCISRALEPSAVQEEFMTSRVN-----W-------------VVQSSAVDYLH 1111

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1112 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1162


>gi|4505937|ref|NP_002684.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|187171277|ref|NP_001119603.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|1706507|sp|P54098|DPOG1_HUMAN RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|1399956|gb|AAC50712.1| DNA polymerase gamma [Homo sapiens]
 gi|1438508|emb|CAA66719.1| DNA polymerase gamma [Homo sapiens]
 gi|27502689|gb|AAH42571.1| Polymerase (DNA directed), gamma [Homo sapiens]
 gi|29791648|gb|AAH50559.1| POLG protein [Homo sapiens]
 gi|119622450|gb|EAX02045.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|119622452|gb|EAX02047.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|311347818|gb|ADP90854.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347820|gb|ADP90855.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347822|gb|ADP90856.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347824|gb|ADP90857.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347826|gb|ADP90858.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347828|gb|ADP90859.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347830|gb|ADP90860.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347832|gb|ADP90861.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347834|gb|ADP90862.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347836|gb|ADP90863.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347838|gb|ADP90864.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347840|gb|ADP90865.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347842|gb|ADP90866.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347846|gb|ADP90868.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347848|gb|ADP90869.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347850|gb|ADP90870.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347854|gb|ADP90872.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347856|gb|ADP90873.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347858|gb|ADP90874.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347860|gb|ADP90875.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347862|gb|ADP90876.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347864|gb|ADP90877.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347866|gb|ADP90878.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347868|gb|ADP90879.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347870|gb|ADP90880.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347872|gb|ADP90881.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347874|gb|ADP90882.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347876|gb|ADP90883.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347880|gb|ADP90885.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347882|gb|ADP90886.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347884|gb|ADP90887.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347886|gb|ADP90888.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347888|gb|ADP90889.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347890|gb|ADP90890.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347892|gb|ADP90891.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347894|gb|ADP90892.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347896|gb|ADP90893.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 100/351 (28%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 950

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 951  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1010

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         WK          + G                
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSD 1068

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1069 IPRTPVLGCCISRALEPSAVQEEFMTSRVN-----W-------------VVQSSAVDYLH 1110

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1111 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1161


>gi|1644239|dbj|BAA12223.1| mitochondrial DNA polymerase gamma [Homo sapiens]
          Length = 1241

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 100/351 (28%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 843  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 901

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 902  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 952

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 953  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1012

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         WK          + G                
Sbjct: 1013 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSD 1070

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1071 IPRTPVLGCCISRALEPSAVQEEFMTSRVN-----W-------------VVQSSAVDYLH 1112

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1113 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1163


>gi|158255998|dbj|BAF83970.1| unnamed protein product [Homo sapiens]
          Length = 1239

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 100/351 (28%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 950

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 951  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1010

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         WK          + G                
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSD 1068

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1069 IPRTPVLGCCISRALEPSAVQEEFMTSRVN-----W-------------VVQSSAVDYLH 1110

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1111 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1161


>gi|311347852|gb|ADP90871.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 950

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 951  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 1010

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
               + +    + + ++K  R         WK          + G
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGG 1052


>gi|262212059|gb|ACY35646.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212071|gb|ACY35652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212081|gb|ACY35657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212101|gb|ACY35667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212145|gb|ACY35689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
             + V        K +  A  Y  G +                       Q + + +   
Sbjct: 69  SRELV--------KTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|297697407|ref|XP_002825850.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Pongo abelii]
          Length = 1247

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 100/351 (28%), Gaps = 57/351 (16%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 849  LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 907

Query: 390  -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                 A  AG        W         G D++  T                R   K+  
Sbjct: 908  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 958

Query: 437  LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 959  YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELHL 1018

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
               + +    + + ++K  R         W+          + G                
Sbjct: 1019 PVDRTEGGWISLQDLRKVQRET--ARKSQWRKWEVIAERAWKGGTESEMFNKLESIATSD 1076

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                  +   +  +        +   S +N                   +VQ+ + D L 
Sbjct: 1077 IPRTPVLGCRISRALEPSAVREEFMTSRVN-----W-------------VVQSSAVDYLH 1118

Query: 612  EGMKNAT--KNGYDI----VLTVHDEI---VSETPDTPYFSVGTLCSLMTK 653
              +         + I     +++HDE+   V E           + +L+T+
Sbjct: 1119 LMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTR 1169


>gi|262212195|gb|ACY35714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE RVL+      ++ +        DI+     K    
Sbjct: 10  SRFRELSLPSPNQFMVGADLAGIELRVLSHFPARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC----------GLDLQQFSQNVKST 469
             + V        K +  A  Y  G +                       Q + + +   
Sbjct: 69  SRELV--------KTVTYAFLYGAGDEKIGHSYDKLLPSKAAEKKGKEIRQAYIEAIDGR 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKRWM 169


>gi|322366583|gb|ADW95369.1| Putative DNA/RNA polymorease [Staphylococcus cohnii]
          Length = 366

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYA---LRMYLFLITGIDLVDMSEGTLKSILS-- 266
           +  + +  L  +  K T  +   + +      L+  L          + + +   + +  
Sbjct: 1   METRYKIMLQPEANKATSWLTDKASEQLEVSLLKESLVERANRQYEQLPKESKLKLDNYV 60

Query: 267 --HSNITQLAKDLILN--RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             H  +  L K++  N   L     +++K N L +A +   R          ++  ++ G
Sbjct: 61  DLHHQLKPLMKEIESNCITLDIEQLSVIKENMLEKAKNEQHR----------TKVSQFFG 110

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
            ++Q  +   +  ++  L  T    +R  +    +      ++  I+ S  +K+   D  
Sbjct: 111 SLYQTLDATNRLYTQLSLFGTR--THRITSKRFNVQGLPKAIQQIIVPSQFRKVFTIDFK 168

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK---VMELAL 439
             E  V A++  ++  I+     E +Y     +        + K +R   K   +     
Sbjct: 169 SFEPSVAAYMTQDEQLIEYLNQEEGLYDALLNEL------SLDKGKRKYVKRAFIGSFLF 222

Query: 440 GYQGGAKVFK 449
           G +  +  FK
Sbjct: 223 GGRYSSSNFK 232


>gi|156041228|ref|XP_001587600.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980]
 gi|154695976|gb|EDN95714.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1146

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 41/155 (26%), Gaps = 28/155 (18%)

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
                  PQ +P    +   +  T                    ++S I A  G   V A
Sbjct: 668 SETGYILPQVIPMGTVTRRAVENT-----WLTASNAKKNRVGSELKSMIKAPPGYCFVGA 722

Query: 380 DLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSK 426
           D+   E  + A + G+         A          A G D++  T +            
Sbjct: 723 DVDSEELWI-ASLVGDAQFKLHGGNAVGFMTLEGTKAAGTDLHSRTAS-ILGIT------ 774

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
             R   KV      Y  G K   T+       L +
Sbjct: 775 --RNDAKVFNYGRIYGAGLKFASTLLRQFNPSLSE 807


>gi|45188230|ref|NP_984453.1| ADR357Cp [Ashbya gossypii ATCC 10895]
 gi|44983074|gb|AAS52277.1| ADR357Cp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 29/132 (21%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE----------------DWKIKAFAN 404
              +++ I+A  G   V AD+   E  + A + G+                +    A   
Sbjct: 662 GSELKTKIVAPEGYSFVGADVDSEELWI-ASLIGDSVFNIHGGTAIGYMCLEGTKDA--- 717

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T +              R   K+      Y  G +    +       L +   
Sbjct: 718 GTDMHTKTAS-ILGCS--------RNEAKIFNYGRIYGAGVRFAAQLLKQFNPTLSEEQT 768

Query: 465 NVKSTSTFEDWE 476
              +   +E  +
Sbjct: 769 RATAERLYEATK 780


>gi|262368015|pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
           Holoenzyme
 gi|262368018|pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
           Holoenzyme
          Length = 1172

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           LP+   +  I  + ++      + A P  + S+ +++ + A  G  LV AD+   E  + 
Sbjct: 774 LPQVVTAGTITRRAVEPTWLTASNARPDRVGSE-LKAMVQAPPGYTLVGADVDSQELWIA 832

Query: 390 -----AWIAGED------WKIKAFAN--GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                A  AG        W         G D++  T                R   K+  
Sbjct: 833 AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV-GIS--------REHAKIFN 883

Query: 437 LALGYQGG--AKVFKTMASHCGLDLQQF---SQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
               Y  G        M  +  L  Q+    +Q + + +    W +      W+  +   
Sbjct: 884 YGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNL 943

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
              + +    + + ++K  R         WK          + G
Sbjct: 944 PVDRTEGGWISLQDLRKVQRET--ARKSQWKKWEVVAERAWKGG 985


>gi|157138880|ref|XP_001647551.1| DNA polymerase gamma [Aedes aegypti]
 gi|108865347|gb|EAT32219.1| DNA polymerase gamma [Aedes aegypti]
          Length = 657

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 24/150 (16%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDW--------KIKAFANGED 407
              +R+ + A  G K+V AD+   E  + +       AG              + A   D
Sbjct: 278 GSELRAMVQAPKGYKMVGADVDSQELWIASVLGDGHAAGIHGATPLGWMTLSGSKAAKTD 337

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T                R   KV+  A  Y  G    + +         +     K
Sbjct: 338 MHSVTAQAV-GIS--------RDHAKVINYARIYGAGQNFAERLLKQFNPTFSEAEARSK 388

Query: 468 STSTFEDWEQAESHHLW--MQDQYPEFAVK 495
           +   F   +  + ++L    +D++P     
Sbjct: 389 AMKMFALTKGKKFYYLKPDYRDEFPHKGYS 418


>gi|262342137|gb|ACY54579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 29/169 (17%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----------ASHCGLDLQQFSQNVKST 469
                    R + K +  AL Y  G +                       Q + + +   
Sbjct: 69  S--------RKLVKTVTYALLYGAGDEKIGHSCDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 470 STFEDWEQAESHHLWMQD--------QYPEFAVKDKLIGTACELVKKAW 510
               +  +  S   +++           P  A+   L G +  L K+  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKIIVDSPHEALNYCLQGNSAILAKRWM 169


>gi|70725054|ref|YP_251968.1| hypothetical protein SH0053 [Staphylococcus haemolyticus JCSC1435]
 gi|68445778|dbj|BAE03362.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
 gi|166197599|dbj|BAG06208.1| hypothetical protein [Staphylococcus aureus]
 gi|221148480|gb|ACL99841.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768512|dbj|BAH66824.1| hypothetical protein [Staphylococcus aureus]
 gi|283469274|emb|CAQ48485.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 369

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 80/245 (32%), Gaps = 42/245 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKL- 292
           + +   L  Y+ +   ++ +     +    L    +  + A  L   +       I +L 
Sbjct: 53  ANEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHFDKIEQLF 112

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L ++++   RL   L   G +RT R +   F  Q LP+                    
Sbjct: 113 DRLDQSLNGTNRLYTQLSLIG-TRTHRITTKRFNVQGLPK-------------------- 151

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      V+  I+ S  KK+   D    E  V A++  ++  I    + E +Y   
Sbjct: 152 ----------LVQQMILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDAL 201

Query: 413 YAKAFNTPIDKVSKEQRAIGK---VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                      +SKE+R   K   +     G +  +  FK       ++  Q     K  
Sbjct: 202 ------LRDLSLSKEKRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKV 255

Query: 470 STFED 474
             F++
Sbjct: 256 IEFKE 260


>gi|323512647|gb|ADX88101.1| DNA polymerase [Vibrio phage ICP1_2006_D]
 gi|323512875|gb|ADX88328.1| DNA polymerase [Vibrio phage ICP1_2006_C]
 gi|323513103|gb|ADX88555.1| DNA polymerase [Vibrio phage ICP1_2006_B]
 gi|323513330|gb|ADX88781.1| DNA polymerase [Vibrio phage ICP1_2006_A]
 gi|323513557|gb|ADX89007.1| DNA polymerase [Vibrio phage ICP1_2005_A]
          Length = 903

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 116/394 (29%), Gaps = 41/394 (10%)

Query: 244 YLFLITGIDLVDMS-------EGTLKSILSHSNITQLAKDL-----ILNRLASSGSA-IL 290
           ++    G+++  ++       +  +K         +L  +       L ++    ++ I+
Sbjct: 453 WINQEMGVEIHKITSRNHPDFKKVVKKARFLVTSPKLKDERGELCPNLEKIDGEMASKIV 512

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K  +L          R  ++    ++   W       ++     R   +     +  +  
Sbjct: 513 KWLSLRN-------RRSVIKAIDETKETGWLNHPRLKKDGKLPARYSGLTNTNRRKHSVI 565

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG--EDI 408
             I     L    +RS      G   V  D + +E    A  A   +   A+  G   D 
Sbjct: 566 ANIPGSDALLGHEMRSLFTVPEGFWQVGIDGSNLEGFCAAN-AAFPFDNGAYYRGLSGDP 624

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +              VS   R+ GK +   + Y   A    +M        Q        
Sbjct: 625 HTENAKAYSKAAGRTVS---RSEGKGITYGVLYGAQAAKVSSMLGISKDQAQNVINAFWD 681

Query: 469 TST-FEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC-ELVKKAWRAKHQGVLQ-----LW 521
           T+   +  ++    +     +     +  + I T     +  A+      +       LW
Sbjct: 682 TNYGLKGCKEWLEKYWESTGKKYILGIDKRKIWTRSKHSLLNAYLQSMGAIGMDLAGILW 741

Query: 522 KD-------LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            +       L +G A ++        +   N+ RL       +    + S  +L+    K
Sbjct: 742 HERALEEGLLEKGVARIIYYHDEYQLQVPNNLVRLKEFDTGINEKTTVESVLKLIDKAAK 801

Query: 575 GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISR 607
                 +  + Q +  +        EN+VQA S 
Sbjct: 802 LKDKGEDFDSYQVIGSKFGLSETQVENVVQARSA 835


>gi|145614196|ref|XP_364068.2| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
 gi|145021143|gb|EDK05272.1| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 51/193 (26%), Gaps = 34/193 (17%)

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                PQ +P    +   +  T                    +++ + A  G   V AD+
Sbjct: 626 SGFILPQIIPMGTITRRAVENT-----WLTASNAKKNRVGSELKAMVKAPPGYCFVGADV 680

Query: 382 AGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQ 428
              E  + A + G+         A          A G D++  T +              
Sbjct: 681 DSEELWI-ASVVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT-------- 730

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLD------LQQFSQNVKSTSTFEDWEQAESHH 482
           R   KV      Y  G K    +      +      ++  S+   +T   +   +A    
Sbjct: 731 RNDAKVFNYGRIYGAGLKFAGQLLRQFNPNLSEQETVETASKLYAATKGAKTNRKALYKR 790

Query: 483 LWMQDQYPEFAVK 495
            + +     F   
Sbjct: 791 PFWRGGTESFVFN 803


>gi|323513790|gb|ADX89239.1| DNA polymerase [Vibrio phage ICP1_2001_A]
 gi|323514018|gb|ADX89466.1| DNA polymerase [Vibrio phage ICP1_2004_A]
          Length = 903

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 116/394 (29%), Gaps = 41/394 (10%)

Query: 244 YLFLITGIDLVDMS-------EGTLKSILSHSNITQLAKDL-----ILNRLASSGSA-IL 290
           ++    G+++  ++       +  +K         +L  +       L ++    ++ I+
Sbjct: 453 WINQEMGVEIHKITSRNHPDFKKVVKKARFLVTSPKLKDERGELCPNLEKIDGEMASKIV 512

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K  +L          R  ++    ++   W       ++     R   +     +  +  
Sbjct: 513 KWLSLRN-------RRSVIKAIDETKETGWLNHPRLKKDGKLPARYSGLTNTNRRKHSVI 565

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG--EDI 408
             I     L    +RS      G   V  D + +E    A  A   +   A+  G   D 
Sbjct: 566 ANIPGSDALLGHEMRSLFTVPEGFWQVGIDGSNLEGFCAAN-AAFPFDNGAYYRGLSGDP 624

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +              VS   R+ GK +   + Y   A    +M        Q        
Sbjct: 625 HTENAKAYSKAAGRTVS---RSEGKGITYGVLYGAQAAKVSSMLGISKDQAQNVINAFWD 681

Query: 469 TST-FEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC-ELVKKAWRAKHQGVLQ-----LW 521
           T+   +  ++    +     +     +  + I T     +  A+      +       LW
Sbjct: 682 TNYGLKGCKEWLEKYWESTGKKYILGIDKRKIWTRSKHSLLNAYLQSMGAIGMDLAGILW 741

Query: 522 KD-------LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            +       L +G A ++        +   N+ RL       +    + S  +L+    K
Sbjct: 742 HERALEEGLLEKGVARIIYYHDEYQLQVPNNLVRLKEFDTGINEKTTVESILKLIDKAAK 801

Query: 575 GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISR 607
                 +  + Q +  +        EN+VQA S 
Sbjct: 802 LKDKGEDFDSYQVIGSKFGLSETQVENVVQARSA 835


>gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
 gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
          Length = 648

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 34/186 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSD 56
             L++D E              Y     ++L          ++  V + D  ++  +  D
Sbjct: 21  KTLWLDTEI----------ADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQD 70

Query: 57  LLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            +   +++  +  V HN+ F+     K LG     K   CT  +A+  G          +
Sbjct: 71  FINQIMKNPQIEKVFHNASFDI----KYLGGKEEVKNVTCTLKIAKKIGKH--------S 118

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN      K      L    C   I       +        +L   Y K DV     +  
Sbjct: 119 LNVPNLKLK-----TLAEYLCNLPIVE-DQQASDWGKRPLTELQLNYAKMDVVYLANVHH 172

Query: 176 RLIPLS 181
            L+ L+
Sbjct: 173 YLLTLN 178


>gi|325171024|ref|YP_004250999.1| DNA polymerase [Vibrio phage ICP1]
 gi|323512419|gb|ADX87874.1| DNA polymerase [Vibrio phage ICP1]
          Length = 903

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 116/394 (29%), Gaps = 41/394 (10%)

Query: 244 YLFLITGIDLVDMS-------EGTLKSILSHSNITQLAKDL-----ILNRLASSGSA-IL 290
           ++    G+++  ++       +  +K         +L  +       L ++    ++ I+
Sbjct: 453 WINQEMGVEIHKITSRNHPDFKKVVKKARFLVTSPKLKDERGELCPNLEKIDGEMASKIV 512

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K  +L          R  ++    ++   W       ++     R   +     +  +  
Sbjct: 513 KWLSLRN-------RRSVIKAIDETKETGWLNHPRLKKDGKLPARYSGLTNTNRRKHSVI 565

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG--EDI 408
             I     L    +RS      G   V  D + +E    A  A   +   A+  G   D 
Sbjct: 566 ANIPGSDALLGHEMRSLFTVPEGFWQVGIDGSNLEGFCAAN-AAFPFDNGAYYRGLSGDP 624

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +              VS   R+ GK +   + Y   A    +M        Q        
Sbjct: 625 HTENAKAYSKAAGRTVS---RSEGKGITYGVLYGAQAAKVSSMLGISKDQAQNVINAFWD 681

Query: 469 TST-FEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC-ELVKKAWRAKHQGVLQ-----LW 521
           T+   +  ++    +     +     +  + I T     +  A+      +       LW
Sbjct: 682 TNYGLKGCKEWLEKYWESTGKKYILGIDKRKIWTRSKHSLLNAYLQSMGAIGMDLAGILW 741

Query: 522 KD-------LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            +       L +G A ++        +   N+ RL       +    + S  +L+    K
Sbjct: 742 HERALEEGLLEKGVARIIYYHDEYQLQVPNNLVRLKEFDTGINEKTTVESILKLIDKAAK 801

Query: 575 GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISR 607
                 +  + Q +  +        EN+VQA S 
Sbjct: 802 LKDKGEDFDSYQVIGSKFGLSETQVENVVQARSA 835


>gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 203

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 36/194 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        + +        + L  ++  +        T Q  +  +L   L D
Sbjct: 20  LAIDTET------MGLNLHR----DKLCLLQFSNGNGEAHFVHFTNQDYIAPNLKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SVLARTNGLPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT   S L RT      L + C  L  + 
Sbjct: 70  KTRCKIFHFARFDLAFIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLNDLCREL-LNI 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           +++K ++                      A+++ + Q   EY  +DV    +L   L  +
Sbjct: 127 NISKQQQSSYW-----------------GADNLSSEQ--KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTI 194
              E + + L Q I
Sbjct: 168 LLKE-NRYELAQDI 180


>gi|49257042|dbj|BAD24831.1| hypothetical protein [Staphylococcus aureus]
          Length = 369

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 80/245 (32%), Gaps = 42/245 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKL- 292
           + +   L  Y+ +   ++ +     +    L    +  + A  L   +       I +L 
Sbjct: 53  ANEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHFDKIEQLF 112

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L ++++   RL   L   G +RT R +   F  Q LP+                    
Sbjct: 113 DRLDQSLNGTNRLYTQLSLIG-TRTHRITTKRFNVQGLPK-------------------- 151

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      V+  I+ S  KK+   D    E  V A++  ++  I    + E +Y   
Sbjct: 152 ----------LVQQMILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDAL 201

Query: 413 YAKAFNTPIDKVSKEQRAIGK---VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                      +SKE+R   K   +     G +  +  FK       ++  Q     K  
Sbjct: 202 ------LRDLSLSKEKRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKV 255

Query: 470 STFED 474
             F++
Sbjct: 256 IEFKE 260


>gi|154283185|ref|XP_001542388.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
 gi|150410568|gb|EDN05956.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
          Length = 1126

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 65/242 (26%), Gaps = 36/242 (14%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LAK+ +    + S     +   +S+ V     +        ++ T +    + Q   +P 
Sbjct: 598 LAKEALEMNASCSYWISARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQI--IPM 655

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
              +   +  T                    +++ + A  G   V AD+   E  + A +
Sbjct: 656 GTITRRAVENT-----WLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASL 709

Query: 393 AGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            G+                    + G D++  T                R   KV     
Sbjct: 710 VGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTA-NILGIS--------RNDAKVFNYGR 760

Query: 440 GYQGGAKVFKTMASHCGLDLQQ------FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            Y  G K   T+       + +       +   K T       +  S + + +     F 
Sbjct: 761 IYGAGLKFAATLLRQFNPSMSEQETKRVAANLYKETKGTRTNRKILSDNPFWRGGTESFV 820

Query: 494 VK 495
             
Sbjct: 821 FN 822


>gi|439149|gb|AAA64535.1| DNA polymerase [Bacillus phage SPO1]
          Length = 91

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 17/96 (17%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ LS  +  D  +  +   +G + TGR S      Q  PR+  +  +     +      
Sbjct: 13  VSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNFEIKKMFN 71

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           +                   +G  +V  D + +E R
Sbjct: 72  SRF----------------GDGGVIVQFDYSQLELR 91


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 17/105 (16%)

Query: 27  QAVITLCAYAW------DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF 80
                + A A       DD   K+ D  + + +  DL+ ++ D  V+  AHN+ F+R   
Sbjct: 45  NPERLIPADAIRVHGITDD---KVKDAPKFAQIVVDLMDFIGDAPVI--AHNAQFDRNFI 99

Query: 81  ----KKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFS 119
                +     +   RWI T  LA+    G+ +SL   C     S
Sbjct: 100 DHECGRCGHPLLHETRWIDTLQLAQKRFPGMANSLDALCKRYKIS 144


>gi|291335384|gb|ADD94998.1| DNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
          Length = 217

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 30/164 (18%)

Query: 376 LVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
           +V ADL+GIE R+LA      +  +       +DI+     K             R   K
Sbjct: 1   MVGADLSGIELRMLAHYLARYDGGRYAKLLLEDDIHQINADKI-GIS--------RRQVK 51

Query: 434 VMELALGYQGGAKVFK---------TMASHCGLDLQ-QFSQNVKSTSTFEDWEQAESHHL 483
            +  A  Y  G +            T A   G +++  +   V          +  +   
Sbjct: 52  TVTYAFLYGAGDEKIGHSYDPQLSTTAAKKKGKEIRAAYVDAVDGLDDLLKAIKQAAERG 111

Query: 484 WMQDQY--------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           +++           P  A+   L  +   ++ K W   +Q  ++
Sbjct: 112 FIRSIDGRKVNVDSPHKALNYCLQ-SGAGVIAKRWMVINQETMR 154


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +D+ET        +   GV+        E    TL     D  PV +   T      + L
Sbjct: 43  VDVETTGLARDDRIVSAGVYQLDALGRVEDHWYTLVNPERDPGPVWIHGLTTGVLKDAPL 102

Query: 58  LQYLRDE------TVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLPSS 108
            + + DE        + VAHN+ F+  +  +               CT  L++  GLP  
Sbjct: 103 FKDISDELSARLADRVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIALSKELGLPLP 162

Query: 109 ---LKNACLALNFSEHLTK 124
              L++        +    
Sbjct: 163 NHKLESLAAHFGVVQERAH 181


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +D+ET        +   GV+        E    TL     D  PV +   T      + L
Sbjct: 22  VDVETTGLARDDRIVSAGVYQLDALGRVEDHWYTLVNPERDPGPVWIHGLTTGVLKDAPL 81

Query: 58  LQYLRDE------TVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLPSS 108
            + + DE        + VAHN+ F+  +  +               CT  L++  GLP  
Sbjct: 82  FKDISDELSARLADRVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIALSKELGLPLP 141

Query: 109 ---LKNACLALNFSEHLTK 124
              L++        +    
Sbjct: 142 NHKLESLAAHFGVVQERAH 160


>gi|326680088|ref|XP_001921130.2| PREDICTED: DNA polymerase subunit gamma-1-like [Danio rerio]
          Length = 1203

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 57/424 (13%), Positives = 112/424 (26%), Gaps = 60/424 (14%)

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             DG   +    ++ + +L  +    L    EGT  +     N           R++S   
Sbjct: 716  KDGNENNVGSPFS-KDFLSKMESGTLQAGREGTNATRALEINKMISFWRNAQKRISSQMV 774

Query: 288  AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              L+   L  +V    RL       G             PQ +P    +   +  T    
Sbjct: 775  VWLRRAELPRSV----RLHQDYDEEG-------QYGAILPQVIPAGTVTRRAVEPT---- 819

Query: 348  NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDW----- 397
                            +++ +       LV AD+   E  + A       AG        
Sbjct: 820  -WLTASNARKDRVGSELKAMVQVPPAYHLVGADVDSQELWIAAMLGEAHFAGMHGCTAFG 878

Query: 398  ---KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
                    + G D++  T                R   KV      Y  G          
Sbjct: 879  WMTLQGKKSQGTDLHSRTADAV-GIS--------REHAKVFNYGRIYGAG---------- 919

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                 ++         + ++          +      + + ++      +L     RA+ 
Sbjct: 920  -QPFAERLLMQFNHRLSQQEAAGKARQMYALTKGLRRYHLSEEGEWLLQKLNVNVERAED 978

Query: 515  QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
              +    +DL +      Q G        A   R+     +  +   L S  +       
Sbjct: 979  GSIS--LQDLRKISKVATQRGSKKKWNLTA--GRVWTDGTESYMFNKLESIAQSDRPATP 1034

Query: 575  GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM--KNATKNGYDI----VLTV 628
                 ++ A      +  +       +VQ+ + D L   +         +DI     +++
Sbjct: 1035 VLNCRISRALEPSAVQEEFITSRVNWVVQSSAVDYLHLMLVSMRWLFEEHDIDGRFCISI 1094

Query: 629  HDEI 632
            HDE+
Sbjct: 1095 HDEV 1098


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 22/127 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L D  V+ VA N  ++ +L K+     I +K +  T +++        +     L+
Sbjct: 326 LKALLEDAAVLKVAQNLKYDYLLMKRY---GIETKSFDDTMLISYVLDAGTGAHGMDPLS 382

Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             F  H     K   G        + ++     D  RA H         Y   D + T  
Sbjct: 383 EKFLGHTPIPYKDVAGS------GRANVTFDLVDIDRATH---------YAAEDADVTLR 427

Query: 173 LFKRLIP 179
           L+  L P
Sbjct: 428 LWLVLKP 434


>gi|154299492|ref|XP_001550165.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
 gi|150857350|gb|EDN32542.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
          Length = 1122

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 41/157 (26%), Gaps = 28/157 (17%)

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           +       PQ +P    +   +  T                    ++S I A  G   V 
Sbjct: 649 KLETGYILPQIIPMGTVTRRAVENT-----WLTASNAKPNRVGSELKSMIKAPPGYCFVG 703

Query: 379 ADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVS 425
           AD+   E  + A + G+         A          A G D++  T             
Sbjct: 704 ADVDSEELWI-ASLVGDAQFKLHGGNAVGFMTLEGTKAAGTDLHSRTAG-ILGIT----- 756

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              R   KV      Y  G K   T+       L + 
Sbjct: 757 ---RNDAKVFNYGRIYGAGLKFASTLLRQFNPSLTEA 790


>gi|330907546|ref|XP_003295846.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
 gi|311332479|gb|EFQ96060.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
          Length = 1157

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 40/152 (26%), Gaps = 28/152 (18%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    ++S + A  G   V AD+   
Sbjct: 669 ILPQIIPMGTITRRSVENT-----WLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSQ 723

Query: 385 EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+                    A G D++  T A              R  
Sbjct: 724 ELWI-ASLIGDATFQLHGGNAVGFMTLEGTKAAGTDLHSRTAA-ILGIS--------RND 773

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            KV      Y  G K   T+       L +  
Sbjct: 774 AKVFNYGRIYGAGLKFASTLLRQFNPSLTEAQ 805


>gi|320162698|gb|EFW39597.1| DNA polymerase gamma [Capsaspora owczarzaki ATCC 30864]
          Length = 1596

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 23/118 (19%)

Query: 368  IIASNGKKLVVADLAGIEARVLAWIAGED-----------WKIKAFAN--GEDIYVTTYA 414
            ++A  G +LV AD+   E  + A + G+            W   A     G D++  T A
Sbjct: 952  VVAPQGYQLVGADVDSEELWIAA-LFGDARFGLHGATALGWMTLAGKKSDGTDMHSKTAA 1010

Query: 415  KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                       K  R   K+   A  Y  G    + +       L Q   + +S+  +
Sbjct: 1011 TL---------KTDRDHAKIFNYARIYGAGMSYAQKLLKQFDASLSQEEADKRSSDLY 1059


>gi|225561715|gb|EEH09995.1| DNA polymerase gamma [Ajellomyces capsulatus G186AR]
          Length = 1146

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 61/217 (28%), Gaps = 30/217 (13%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LAK+ +    + S     +   +S+ V     +        ++ T +    + Q   +P 
Sbjct: 618 LAKEALEMNASCSYWISARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQI--IPM 675

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
              +   +  T                    +++ + A  G   V AD+   E  + A +
Sbjct: 676 GTITRRAVENT-----WLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASL 729

Query: 393 AGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            G+                    + G D++  T                R   KV     
Sbjct: 730 VGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTA-NILGIS--------RNDAKVFNYGR 780

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            Y  G K   T+       + +      +   +E+ +
Sbjct: 781 IYGAGLKFAATLLRQFNPSMSEQETKRVAAKLYEETK 817


>gi|251811418|ref|ZP_04825891.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805047|gb|EES57704.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 369

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 42/245 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292
           S +   L  Y+ +   ++ +     +    L    +  +   ++        S  ++   
Sbjct: 53  SNEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHSDKIEHLF 112

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L ++++   RL   L   G +RT R +   F  Q LP+                    
Sbjct: 113 DRLDQSLNGTNRLYTQLSLIG-TRTHRITTKRFNVQGLPK-------------------- 151

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      V+  I+ S  KK+   D    E  V A++  ++  I      E +Y   
Sbjct: 152 ----------LVQQTILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNLEEGLYDAL 201

Query: 413 YAKAFNTPIDKVSKEQRAIGK---VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                      +SKE+R   K   +     G +  +  FK       ++  Q     K  
Sbjct: 202 ------LRDLSLSKEKRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKI 255

Query: 470 STFED 474
             F++
Sbjct: 256 IEFKE 260


>gi|322709296|gb|EFZ00872.1| DNA polymerase gamma [Metarhizium anisopliae ARSEF 23]
          Length = 1090

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 28/154 (18%)

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S     PQ +P    +   +  T                    +++ + A  G   V AD
Sbjct: 610 SYGFILPQVIPMGTITRRAVENT-----WLTASNAKKNRVGSELKAMVKAPKGYCFVGAD 664

Query: 381 LAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKE 427
           +   E  + A + G+         A          A G D++  T               
Sbjct: 665 VDSEELWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT------- 715

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            R   KV      Y  G K   T+       L +
Sbjct: 716 -RNDAKVFNYGRIYGAGLKFAATLLRQFNPSLSE 748


>gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 26/178 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  D    L   T     P+ L   L D  V+ + H + F+ ++ K+ +GI     
Sbjct: 39  LVQVSSGDGTAHLVQLTRDYDCPN-LKALLTDPKVLKIFHFARFDVVMMKRWMGITCAPI 97

Query: 92  RWICTSV---LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            W CT +   LART      LK+    +     ++K ++                    T
Sbjct: 98  -W-CTKIASRLARTYTDRHGLKDVAREV-AGVDMSKAQQSSDWGQ-----------DKLT 143

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            A          +Y   DV    ++   L  + + E  L L     +    R DLDL 
Sbjct: 144 DAQ--------IQYAASDVLYLHQIKAGLEAMLEREGRLELAQACFDFLPIRADLDLA 193


>gi|152978878|ref|YP_001344507.1| hypothetical protein Asuc_1210 [Actinobacillus succinogenes 130Z]
 gi|150840601|gb|ABR74572.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z]
          Length = 254

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 69/229 (30%), Gaps = 71/229 (31%)

Query: 1   MSKLFIDIET----------RSPQPLPKVGVWAYAEQ----------------------A 28
           M  +FIDIET             + L   G +  AE                        
Sbjct: 39  MR-IFIDIETIPTTNADYQNYVCENLKAPGNYKNAEAIEKWLEENKGEAVNKTALDGAFG 97

Query: 29  VITLCAYAWDDEPVKL-----WDRTEQSA-MPSDLLQYLRD------ETVMCVAHNS-LF 75
            I +   A DDE   L     W   ++   + +    YLR+           + HN   F
Sbjct: 98  EIVVIGVAIDDEEPVLFYREDWQSADRETDILTRFNNYLREHANKSTSAPQFIGHNITKF 157

Query: 76  E-RILFKKTLGIDIPSK------RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           + R +F++++   +             T       G   SL   C  L+  +       G
Sbjct: 158 DDRFIFQRSVVNGVKPYYTTSRQNTYDTMTEWAGYGGTVSLDKLCKVLDVEQKGDID--G 215

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             +      G I                    EYC +DVE  R+++KR+
Sbjct: 216 SKVWQYVQDGKISEVA----------------EYCAKDVERVRQIYKRM 248


>gi|328789753|ref|XP_395230.4| PREDICTED: DNA polymerase subunit gamma-1, mitochondrial [Apis
           mellifera]
          Length = 1093

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 23/156 (14%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           LP       +  + ++      + +D   + S+ +R+ I A  G  +V AD+   E  + 
Sbjct: 711 LPLVAVCGTLTRRAVEPTWMTASNSDTERVGSE-LRAMIQAPPGYNIVGADVDSQELWIS 769

Query: 390 -----AWIAGEDW--------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                A+               I   AN  D++  T                R   K++ 
Sbjct: 770 SIIGDAYYKKIHGATPFGWMTLIGTKANETDMHSVTAKAI-GIS--------RNQAKIIN 820

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A  Y  G K  +T+       +      +KS   F
Sbjct: 821 YARIYGAGQKFAETLLKQFNPSMTDSEATLKSRKMF 856



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 21/171 (12%)

Query: 48  TEQSAMP---------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           T    +P           L  + +   ++ V HN  F+R   K+   +     R+I T  
Sbjct: 183 TMDELIPMESIITERGEKLTSFHKKPKII-VGHNVSFDRSKIKEQYWLKQTGLRFIDTMS 241

Query: 99  LARTNGLPSSLKNACL-ALNFSEHLTKMEEGKALI------ARFCKGSIDSPPYDC---- 147
           L    G  +S + + L +   +E    +E   +L         +C   I+    +     
Sbjct: 242 LHICIGGINSYQRSILNSTKNTEEKCNLEMQTSLNNLADIHKFYCGSEINKNVREVFING 301

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           T  N  + +     YC  DV AT  +  +L P+ +      +    + + G
Sbjct: 302 TLKNIKEDFNSLMIYCANDVIATHNVLCKLFPIFEERFPHPVTLAGMLELG 352


>gi|320586879|gb|EFW99542.1| DNA polymerase gamma [Grosmannia clavigera kw1407]
          Length = 1168

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 39/151 (25%), Gaps = 28/151 (18%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    +++ + A  G   V AD+   
Sbjct: 667 ILPQVIPMGTVTRRAVENT-----WLTASNAKKNRVGSELKAMVKAPPGYSFVGADVDSE 721

Query: 385 EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+                    A G D++  T +              R  
Sbjct: 722 ELWI-ASVVGDATFGLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RND 771

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            KV      Y  G +    +       L + 
Sbjct: 772 AKVFNYGRIYGAGLRFAAQLLRQFNPSLSEA 802


>gi|195437646|ref|XP_002066751.1| GK24652 [Drosophila willistoni]
 gi|194162836|gb|EDW77737.1| GK24652 [Drosophila willistoni]
          Length = 1162

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 83/306 (27%), Gaps = 81/306 (26%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE----------- 406
                  +R+ + A  G +LV AD+   E     WIA       A+A GE           
Sbjct: 803  DRLGSELRAMVQAPPGYRLVGADVDSQEL----WIA--SVLGDAYAWGEHGATPLGWMTL 856

Query: 407  --------DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
                    D++  T                R   KV+  A  Y  G +  + +       
Sbjct: 857  SGNKSNQSDMHSITAKAV-GIS--------RDHAKVINYARIYGAGQQFAENLLQQFNPT 907

Query: 459  LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                    K+   F   +                              K+ +R +     
Sbjct: 908  FSASEAKAKAMKMFSITKG-----------------------------KRIYRLRD---- 934

Query: 519  QLWKDLT-------EGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
            +   +L        E     VQ    IS    R +           R   I   +  +  
Sbjct: 935  EFHDELEDRPYSGYEATRLAVQRNRPISEVFHRSSWQGGTESAMFNRLEEIATEAQPKTP 994

Query: 570  YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVL 626
            +   +   +      +   +E+ +       +VQ+ + D   ++   M+    +     L
Sbjct: 995  FLGCRLSRALEADTGA--DQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHARFCL 1052

Query: 627  TVHDEI 632
            + HDE+
Sbjct: 1053 SFHDEL 1058


>gi|229472295|gb|ACQ72662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 177

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 11/102 (10%)

Query: 370 ASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
               +  V AD +G+E R L       +  K        DI+     + + T        
Sbjct: 4   PGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD------- 55

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            R  GK +   L Y GG       A        +  + ++S 
Sbjct: 56  -RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSR 96


>gi|189236910|ref|XP_968888.2| PREDICTED: similar to DNA polymerase subunit gamma 1, mitochondrial
           [Tribolium castaneum]
          Length = 1093

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 105/342 (30%), Gaps = 54/342 (15%)

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           GA R         +   +P+      +  + ++      + A P  + S+ +R+ + A  
Sbjct: 694 GAQRGAALDDGAQRGAIIPQVVVCGTLTRRAVEPTWMTASNARPDRVGSE-LRAMVQAPP 752

Query: 373 GKKLVVADLAGIEARVLAWIAG-EDWKIKAF------------ANGEDIYVTTYAKAFNT 419
           G  ++ AD+   E  + + I   +  ++               A+  D++  T       
Sbjct: 753 GYNIIGADVDSQELWIASIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAV-GI 811

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                    R   KV+  A  Y  G    + +       +       K+   F    + +
Sbjct: 812 S--------RDHAKVINYARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMF-ALTKGK 862

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
             +   ++   E+  ++     A E+ K  W  +   + +  K +           G   
Sbjct: 863 RIYRLKKEFVLEYYDQNYSHWQAFEIAKT-WNRRIDDMFERPKWV-----------GGTE 910

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           +     +  +   +  R   +    SR L                 +L  +  +      
Sbjct: 911 SAMFNRLESIATSQEPRTPFLNGRLSRAL---------------EPKLSSDDRFLPTRIN 955

Query: 600 NIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
            +VQ+ + D   ++   M+          L+ HDE+    P+
Sbjct: 956 WVVQSGAADFLHLMLVCMRWIMGENARFCLSFHDEVRYLVPE 997


>gi|302410881|ref|XP_003003274.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
 gi|261358298|gb|EEY20726.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
          Length = 963

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 42/156 (26%), Gaps = 28/156 (17%)

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           + +     PQ +P    +   +  T                    +++ + A  G   V 
Sbjct: 577 KNTQGFILPQIIPMGTITRRAVENT-----WLTASNAKRNRVGSELKAMVKAPPGYSFVG 631

Query: 379 ADLAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVS 425
           AD+   E  + A + G+         A          A G D++  T             
Sbjct: 632 ADVDSQELWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT----- 684

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
              R   KV      Y  G K    +      +L +
Sbjct: 685 ---RNDAKVFNYGRIYGAGLKFAAQLLRQFDPNLSE 717


>gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 91

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DIL   M N  +     GY   ++L VHDEIV E P+    ++  L    M   
Sbjct: 11  IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA 70

Query: 655 PSWAKGLPLKAE 666
            S    +PL A+
Sbjct: 71  IS--LSVPLIAD 80


>gi|229472493|gb|ACQ72761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 174

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 44/159 (27%), Gaps = 16/159 (10%)

Query: 370 ASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
               +  V AD +G+E R L       +  K        DI+     + + T        
Sbjct: 1   PGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTAPA-EIYGTD------- 52

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-----FEDWEQAESHH 482
            R  GK +   L Y GG       A        +  + V+S        F     A    
Sbjct: 53  -RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEVRSRIMANLGGFAALNAAVQER 111

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                         +L G     +    ++    + +LW
Sbjct: 112 AKSGVLKGLDGRPIRLQGKNHAALNYLLQSAGAVICKLW 150


>gi|320583448|gb|EFW97661.1| DNA polymerase gamma [Pichia angusta DL-1]
          Length = 1141

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 102/344 (29%), Gaps = 40/344 (11%)

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--ELFKRLIPLSDGERDLWLLDQTI 194
           K +    PY   +      W     + K ++  T    +   L+ LS   + ++ LD   
Sbjct: 454 KLTKKGTPYRRQKMPGYPEWY-KKLFSKDNMTLTPKSRVTPLLLKLSWEGKPVYWLD--- 509

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             +G+   +D   + +             IV+  +G+  +      L+   F    +   
Sbjct: 510 -SKGWCFLVDKGEEEKYKKKNYTYLEPARIVE--EGLASNPDFPELLQTKSFFK--VPHE 564

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +  E    +++S   +    + ++ +    +  A+      S  +SS  R+      Y  
Sbjct: 565 EGPESRTTTLMSKPFLRYFEQGILSSEYDLAKDALNLAVRNSYWISSRERIMNQFVVYKK 624

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
                  G +  PQ +P    +   +  T                    +++ I +  G 
Sbjct: 625 DAIDSKIGMII-PQIIPMGTITRRAVENT-----WLTASNAKKSRLGSELKAMIQSPPGY 678

Query: 375 KLVVADLAGIEARVLAWIAGED-------------WKIKAFANGEDIYVTTYAKAFNTPI 421
             V AD+   E  V A + G+                    + G D++  T  K      
Sbjct: 679 CFVGADVDSEELWV-ASLVGDSVFKIHGGTAIGWMTLEGTKSEGTDLHSKTA-KILGIS- 735

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
                  R   KV      Y  G K   ++       L +    
Sbjct: 736 -------RNDAKVFNYGRIYGAGVKFATSLLKKFNPALTEADAR 772


>gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS 97
           P    D  E   + +++ +YL+D  V+ VAHN+ F+    + +L   G++     + C+ 
Sbjct: 61  PNDTADSPEFPEVWTEISKYLKDIPVL-VAHNAAFDIGCIRHSLELYGMEKLEITYYCSL 119

Query: 98  VLARTNGLPS--SLKNACLALNFS--EHLTKMEEGKALIARFCKGSIDSPPYDC 147
             AR        SL   C        +H    ++ +     F K   D+     
Sbjct: 120 RAARKLYSFGCNSLDYLCDQFRIPYGQHHRAGDDAEMCARLFLKELEDAGWCGW 173


>gi|270006334|gb|EFA02782.1| hypothetical protein TcasGA2_TC008519 [Tribolium castaneum]
          Length = 1050

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 105/342 (30%), Gaps = 54/342 (15%)

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           GA R         +   +P+      +  + ++      + A P  + S+ +R+ + A  
Sbjct: 651 GAQRGAALDDGAQRGAIIPQVVVCGTLTRRAVEPTWMTASNARPDRVGSE-LRAMVQAPP 709

Query: 373 GKKLVVADLAGIEARVLAWIAG-EDWKIKAF------------ANGEDIYVTTYAKAFNT 419
           G  ++ AD+   E  + + I   +  ++               A+  D++  T       
Sbjct: 710 GYNIIGADVDSQELWIASIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAV-GI 768

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                    R   KV+  A  Y  G    + +       +       K+   F    + +
Sbjct: 769 S--------RDHAKVINYARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMF-ALTKGK 819

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
             +   ++   E+  ++     A E+ K  W  +   + +  K +           G   
Sbjct: 820 RIYRLKKEFVLEYYDQNYSHWQAFEIAKT-WNRRIDDMFERPKWV-----------GGTE 867

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           +     +  +   +  R   +    SR L                 +L  +  +      
Sbjct: 868 SAMFNRLESIATSQEPRTPFLNGRLSRAL---------------EPKLSSDDRFLPTRIN 912

Query: 600 NIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
            +VQ+ + D   ++   M+          L+ HDE+    P+
Sbjct: 913 WVVQSGAADFLHLMLVCMRWIMGENARFCLSFHDEVRYLVPE 954


>gi|149236109|ref|XP_001523932.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452308|gb|EDK46564.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
          Length = 975

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 76/482 (15%), Positives = 135/482 (28%), Gaps = 87/482 (18%)

Query: 39  DEPVKLWD--------RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           ++P  + D                  + Q L DE +  V H   F  +   K LG  I  
Sbjct: 268 EDPQVVVDNFNMLMNYCAHDVEATFKVTQKLFDEFLEKVPHPVSFAAL---KHLGNLILP 324

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                T    +      S  +A         L K+ E   +  +  K  ++ P +     
Sbjct: 325 T----TKKWVKYIESAESCYSANRD-EVQNTLKKLAEDLVVYIKQNKPDLE-PDHANDPW 378

Query: 151 NHVQAWQLFGEYCKRD--------------------------VEATRELFKRLIPLS-DG 183
                W L     K+D                           E    L  R+ PL    
Sbjct: 379 LSQLDWTLKKARLKKDGTPVKNNAYLTGYPEWYRELFKSSSKTEMNISLRTRITPLLLRL 438

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           + + + L   +  +G+   +    +L      E K+ +   V+LT   I S+        
Sbjct: 439 KWEGYPLF-WVKSQGWCFKVPYSEELVA----ELKEKNYVQVRLTGDEIESTYDALNPAG 493

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD- 302
             +++  +   D       S+LS   +    +      L S      K+  L+   S   
Sbjct: 494 QSYVLFKVPHPDGPTLRCTSVLSKRFL----RFFDEGVLTSQYDYAAKILKLNNEASYWM 549

Query: 303 -GRLRGTLQFYGAS---------RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             R R + QF   +         +T + +        +  +  S   +T+          
Sbjct: 550 GNRQRISDQFVVFNDDERKARFFKTKKENAEHLDMGIILPRLASMGTITRRATENTWLTA 609

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKIKA 401
                      +++ I A  G   V AD+   E  + A + G+            W    
Sbjct: 610 SNAKKNKIGSELKTLIEAPKGYCFVGADVDSEELWI-ASLVGDSIFGLHGGSALGWMTLE 668

Query: 402 FANGE--DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
               +  D++  T +              R   KV      Y  G K   T+       L
Sbjct: 669 GEKSQKTDLHSKTAS-ILGIS--------RNDAKVFNYGRIYGAGLKFATTLLKQFNPSL 719

Query: 460 QQ 461
            +
Sbjct: 720 SE 721


>gi|50556422|ref|XP_505619.1| YALI0F19404p [Yarrowia lipolytica]
 gi|49651489|emb|CAG78428.1| YALI0F19404p [Yarrowia lipolytica]
          Length = 1046

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 23/115 (20%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-------------WKIKAFANGED 407
              ++S I A  G   V AD+   E  + A + G+                    + G D
Sbjct: 683 GSELKSMIKAPPGYSFVGADVDSEELWI-ASLYGDSCFKNHGSTAIGWMTLEGTKSEGTD 741

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           ++  T +              R   K+      Y  G K  + +      ++   
Sbjct: 742 LHSKTAS-ILGIS--------RNEAKIFNYGRIYGAGLKFAEALLKQFSPNVTDA 787


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
          Length = 1758

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
               G+ +++ +HDE++ E P         L   LM     WA+
Sbjct: 161 LRATGFKLLMQIHDEVILEGPRDRSEDAKRLVMELMAN--PWAE 202



 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 28/146 (19%)

Query: 394 GEDWKIKAFANGEDIYVTTYAKAF-------------------NTPIDKVSKEQ----RA 430
                 +AF  G D +  T    +                     P   + K++    R 
Sbjct: 2   KCRSMKEAFELGGDFHSRTAYGMYEYIQEAVKNGECYLEWEGQGEPDKPLVKDKYASERR 61

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             KV+  ++ Y    K    +A       ++  + V      + WE+ +   L  + + P
Sbjct: 62  KAKVLNFSIAYG---KTAHGLAVDFKTTKEEAQETVD-KWYSDRWEEFKVRTLLGRTR-P 116

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQG 516
              +       +    + A     QG
Sbjct: 117 LPNISSPDFRLSGHSNRAAINTPIQG 142


>gi|51094698|gb|EAL23947.1| MAD1 mitotic arrest deficient-like 1 (yeast) [Homo sapiens]
          Length = 803

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 82/274 (29%), Gaps = 18/274 (6%)

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGS-------IDSPPYDCTRANHVQAWQLFGE 161
           +              +++E   L  + C+ +         S          ++  +    
Sbjct: 174 MDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLS 233

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             ++D    + +   L+ L   ER+L  L +    R  R    L+ +  E + ++  + +
Sbjct: 234 LQEQDAAIVKNMKSELVRLPRLERELKQLREESALREMRETNGLLQEELEGLQRKLGRQE 293

Query: 222 EDIVKLTDGIIRSSRQTYALRMY--LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           +    L    + + R    L+ +  L    G+ +           LS   +    ++L L
Sbjct: 294 KMQETLVGLELENERLLAKLQSWERLDQTMGLSIR------TPEDLSRFVVELQQRELAL 347

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               S+ ++  +   L +A       LR         R  R +      +   R     +
Sbjct: 348 KDKNSAVTSSAR--GLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTK 405

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
                   L   ++   P   +    R    A +
Sbjct: 406 ERDGMRAILGSYDSELTPAEYSPQLTRRMREAED 439


>gi|47934612|gb|AAT39744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 254

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 25/167 (14%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           LV  D +G+E R+LA    +D  ++        +G D++                   R 
Sbjct: 50  LVGCDASGLELRMLAHYMKDDDYVRTVCEGSSKDGTDVHT--------VNQRAAGLSTRD 101

Query: 431 IGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             K    A  Y  G      +    A        +F     +     +    ++   W+ 
Sbjct: 102 NAKTFIYAFLYGAGDAKIGSIVGGSAKDGSKLKAKFLDQTPALRKLIERVSKQAAKGWVP 161

Query: 487 D--------QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                    +    A+   L G    ++KKA       +     ++ 
Sbjct: 162 GLDGRRIWVRSEHAALNSLLQGAGAIVMKKALVIFSDKIKTNKWNVK 208


>gi|189208179|ref|XP_001940423.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976516|gb|EDU43142.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1526

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 39/152 (25%), Gaps = 28/152 (18%)

Query: 325  FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              PQ +P    +   +  T                    ++S + A  G   V AD+   
Sbjct: 1038 ILPQIIPMGTITRRSVENT-----WLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSQ 1092

Query: 385  EARVLAWIAGEDW-------------KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            E  + A + G+                    A G D++  T A              R  
Sbjct: 1093 ELWI-ASLIGDATFQLHGGNAVGFMTLEGTKAAGTDLHSRTAA-ILGIS--------RND 1142

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             KV      Y  G K   T+       L    
Sbjct: 1143 AKVFNYGRIYGAGLKFASTLLRQFNPSLTDAQ 1174


>gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 203

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 36/194 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        + +        + L  ++  +    L   T Q     +L   L D
Sbjct: 20  LAIDTET------MGLNLHR----DKLCLLQFSNGNGEAHLVHFTNQDYTAPNLKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SVLARTNGLPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT   S L RT      LK+ C  L  + 
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL-LNI 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           +++K ++                      A+++ + Q   EY  +DV    +L   L  +
Sbjct: 127 NISKQQQSSYW-----------------GADNLSSEQ--KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTI 194
              E   + L Q I
Sbjct: 168 LLKENR-YELAQDI 180


>gi|322699619|gb|EFY91379.1| DNA polymerase gamma [Metarhizium acridum CQMa 102]
          Length = 1090

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 28/154 (18%)

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S     PQ +P    +   +  T                    +++ + A  G   V AD
Sbjct: 610 SHGFILPQVIPMGTITRRAVENT-----WLTASNAKKNRVGSELKAMVKAPKGYCFVGAD 664

Query: 381 LAGIEARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKE 427
           +   E  + A + G+         A          A G D++  T               
Sbjct: 665 VDSEELWI-ASLVGDATFKIHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT------- 715

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            R   KV      Y  G K   T+       L +
Sbjct: 716 -RNDAKVFNYGRIYGAGLKFAATLLRQFNPSLSE 748


>gi|169614686|ref|XP_001800759.1| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
 gi|160702800|gb|EAT81884.2| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
          Length = 1130

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 29/179 (16%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             PQ +P    +   +  T                    ++S + A  G   V AD+   
Sbjct: 665 ILPQIIPMGTVTRRSVENT-----WLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSE 719

Query: 385 EARVLAWIAGEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           E  + A + G+         A          A G D++  T                R  
Sbjct: 720 ELWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIS--------RND 769

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
            KV      Y  G K   T+       L + SQ  K+ +      + +  +  M  + P
Sbjct: 770 AKVFNYGRIYGAGLKFASTLLRQFNPSLTE-SQTSKTANDLYQDTKGKKTNRKMLHERP 827


>gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 203

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 36/194 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        + +        + L  ++  +    L   T Q     ++   L D
Sbjct: 20  LAIDTET------MGLNLHR----DKLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SVLARTNGLPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT   S L RT      LK+ C  L  + 
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL-LNI 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           +++K ++                      A+++ + Q   EY  +DV    +L   L  +
Sbjct: 127 NISKQQQSSYW-----------------GADNLSSEQ--KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTI 194
              E + + L Q I
Sbjct: 168 LLKE-NRYELAQDI 180


>gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS 97
           P    D  E   + +++ +YL+D   + VAHN+ F+    + +L   G++ P   + C+ 
Sbjct: 61  PNDTVDSPEFPEVWAEISEYLKD-IPILVAHNAAFDVGCIRHSLELYGMEKPDITYYCSL 119

Query: 98  VLARTNGLPS--SLKNACLALNFS--EHLTKMEEGKALIARFCKGSIDSPPY 145
             AR        SL   C         H    ++ +     F +   D    
Sbjct: 120 RAARKLYDFGCNSLDYLCDQFKIPYGRHHRAGDDAEMCARLFLREIKDFGLC 171


>gi|307153599|ref|YP_003888983.1| chromosome segregation ATPase-like protein [Cyanothece sp. PCC
           7822]
 gi|306983827|gb|ADN15708.1| Chromosome segregation ATPase-like protein [Cyanothece sp. PCC
           7822]
          Length = 760

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 96/269 (35%), Gaps = 27/269 (10%)

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL----FGEYCKRDVEATRE 172
            +      + +    +    +   +        A  ++  +     F +   +D E  RE
Sbjct: 317 KYQNFKATVSQDAEALRELDQKYQNFKATVSQDAEDLRELKQKVQNFQDTVAQDAETLRE 376

Query: 173 LFKRLIPL-----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK------KLD 221
           + +++         DGER   L+       G  +D   + +L  L  Q+R+      +L+
Sbjct: 377 IQEKIDNFKDIVGQDGERFKALIFNLQQVEGINLDRQELKELITLNNQDRQRFPIQPELN 436

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQL-A 274
           E + +     + +  Q       +    G++        LK++      L++ +I +   
Sbjct: 437 ERLQQFAT-RLDNLGQLQQ--NLISSKEGLEQASQKIDELKTLQQDIFSLNNRDIQRFNT 493

Query: 275 KDLILNRLASSGSAILKLNTL-SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           K+ +  +L +  + I  L  L  + ++S  RL    Q     R  + SG + Q     + 
Sbjct: 494 KEKLETKLQNIITKIEDLQQLQQDLIASRERLEQASQQIQKLRALQDSGTLQQLDTEIQN 553

Query: 334 ERSEEILT-QTIQALNRGETIADPLGLAS 361
            ++      + +  L + +   +   LAS
Sbjct: 554 AKTVLDQNIEYLNKLKQFQENREVQQLAS 582


>gi|312218970|emb|CBX98915.1| similar to DNA polymerase gamma [Leptosphaeria maculans]
          Length = 1168

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 58/199 (29%), Gaps = 43/199 (21%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
           A+D I +++    + + K   L+ A S  GR             G+  G    PQ +P  
Sbjct: 632 ARDRITSQMVVYNAEVPKAPKLASA-SGKGR-------------GKKVG-FILPQIIPMG 676

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
             +   +  T                    ++S + A  G   V AD+   E  + A + 
Sbjct: 677 TITRRSVENT-----WLTASNAKKNRVGSELKSMVRAPEGYCFVGADVDSQELWI-ASLI 730

Query: 394 GEDWKI----KAF---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
           G+         A          A G D++  T                R   KV      
Sbjct: 731 GDATFKLHGGNAVGFMTLEGTKAAGTDLHSRTAG-ILGIS--------RNAAKVFNYGRI 781

Query: 441 YQGGAKVFKTMASHCGLDL 459
           Y  G K   T+       L
Sbjct: 782 YGAGLKFAATLLRQFNPTL 800


>gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246]
 gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246]
 gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 203

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 36/194 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        + +        + L  ++  +    L   T Q     ++   L D
Sbjct: 20  LAIDTET------MGLNLHR----DKLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SVLARTNGLPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT   S L RT      LK+ C  L  + 
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL-LNI 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           +++K ++                      A+++ + Q   EY  +DV    +L   L  +
Sbjct: 127 NISKQQQSSYW-----------------GADNLSSEQ--KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTI 194
              E   + L Q I
Sbjct: 168 LLKENR-YELAQDI 180


>gi|241956434|ref|XP_002420937.1| DNA polymerase gamma subunit, putative; mitochondrial DNA
           polymerase catalytic subunit, putative [Candida
           dubliniensis CD36]
 gi|223644280|emb|CAX41091.1| DNA polymerase gamma subunit, putative [Candida dubliniensis CD36]
          Length = 1329

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 52/398 (13%), Positives = 111/398 (27%), Gaps = 57/398 (14%)

Query: 213 IAQERKKLDEDIV---KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
              E  +L E      KLT+  I  +R     +   +++  +   +        ILS   
Sbjct: 572 DDNEISRLTEKKYVQPKLTEEEINQTRDVLLTKGKSYILFKVPHPNGPSSRCTHILSKLY 631

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSD----GRLRGTL---QFYGASR---TGR 319
           +    ++     L S      K+  L+   S       R++         G ++   T +
Sbjct: 632 V----RNFEDGTLTSEYDYATKILNLNNEASYWLGNRNRIKDQFVVYNQLGKNKFFDTIK 687

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S        +     +   +T+                     ++S I A  G   V A
Sbjct: 688 ESKEHSSMGIIIPNLATMGTITRRATENTWLTASNAKKNRIGSELKSLIEAPKGYCFVGA 747

Query: 380 DLAGIEARVLAWIAGED-----------WKIKAFANGE--DIYVTTYAKAFNTPIDKVSK 426
           D+   E  + A + G+            W        +  D++  T +            
Sbjct: 748 DVDSEELWI-ASLVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTAS-ILGIS------ 799

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDL---------QQFSQNVKSTSTFEDWEQ 477
             R   KV      Y  G K    +      ++         +Q   + K  +    +  
Sbjct: 800 --RNDAKVFNYGRIYGAGVKFATRLLKQFNGNITDEEADKVARQLYDSTKGRTAMTKYLP 857

Query: 478 AESHHLW----MQDQYPEFA-VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
           ++ ++      M +     A  ++         +  A   K+    Q    +T      +
Sbjct: 858 SKIYYGGTESIMFNTLEAIAQQEEPKTPVLGASITDALNVKNLNTNQY---MTSRVNWTI 914

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           Q  G      +      ++ ++  +  + +     L Y
Sbjct: 915 QSSGVDYLHLLIISMEYLIEKYGIEARLAITVHDELRY 952


>gi|254581264|ref|XP_002496617.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
 gi|238939509|emb|CAR27684.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
          Length = 1239

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 22/139 (15%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG----------EDWKI--KAFANGEDI 408
              +++ + A  G   V AD+   E  + + ++             W         G D+
Sbjct: 699 GSELKTQVKAPKGYSFVGADVDSEELWIASLVSDSVFNIHGGTAIGWMCLEGTKNEGTDL 758

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-QQFSQNVK 467
           +  T  +             R   K+      Y  G K    +       L  + +Q + 
Sbjct: 759 HTKTA-QILGC--------NRNEAKIFNYGRIYGAGVKFATQLLKKFNPSLPDEEAQGIA 809

Query: 468 STSTFEDWEQAESHHLWMQ 486
           +        + +   ++ +
Sbjct: 810 NQLYENTKGKIQRSKIFKK 828


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%)

Query: 37  WDDEPVKLWD--RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           + D   +LW         +     +Y    ++  V HN  F++ +  +     I  + + 
Sbjct: 669 FGDGKNRLWIDVLDGGEDVLKVFKRYFESPSIKKVWHNYSFDKHVLGRH---GIHPQGFH 725

Query: 95  CTSVL-ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             ++  AR             +L       K+ +G   I    +            A   
Sbjct: 726 ADTIHLARLYDSARRGAKGGYSLEVLSADEKVMDGY--IRHSTEVDESV------LAGKK 777

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
              +LFG+   +  + T    K + P+ + +RD  L D  I 
Sbjct: 778 SMKELFGKANLKK-DGTPGKIKTIPPVHELQRDEELRDAWIY 818


>gi|167600407|ref|YP_001671907.1| DNA polymerase part II [Pseudomonas phage LUZ24]
 gi|161168270|emb|CAP45435.1| DNA polymerase part II [Pseudomonas phage LUZ24]
          Length = 393

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 83/263 (31%), Gaps = 50/263 (19%)

Query: 188 WLLDQT-------INDRGYRID------LDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           W+LDQ        I D     D       DL   L + I   R+     +     GII  
Sbjct: 113 WMLDQGWIPDQWNIKDITVGTDGKKLRGSDLNESLNKYIEDLRQSKSGRLRMKLQGIIPG 172

Query: 235 SRQTYALRMYLFLITG-IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
                 ++  L      +    M+E ++        +      L++ R+  +    L L 
Sbjct: 173 KTTIGEVKRKLEKQRKVLTTPKMTEESM------DTVQGDLGKLVMQRMVWAHRRSL-LQ 225

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP----------------RQERSE 337
            L + V  DGRL G+     A+ TGR    V    N+P                  E  E
Sbjct: 226 GLVDQVRPDGRLEGSANPC-ATPTGRMRHRVV--VNIPAARSPFGPEIRGLFQGTPEAGE 282

Query: 338 EILTQTIQALNRGETIADPLGLASDCVR---------SCIIASNGKKLVVADLAGIEARV 388
              T   + L   E +     +  +  +            + +N    V  D AG+E R+
Sbjct: 283 WKWTVLRRDLGENERVRPFTNIVEELKKGKWKTVGKYRVYVPANQLVFVGYDGAGLELRM 342

Query: 389 LAWIAGEDWKIKAFANGEDIYVT 411
           LA         K    G D++  
Sbjct: 343 LASYINNPEYTKEVVEG-DVHTA 364


>gi|256272554|gb|EEU07533.1| Mip1p [Saccharomyces cerevisiae JAY291]
          Length = 1254

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 51/402 (12%), Positives = 118/402 (29%), Gaps = 40/402 (9%)

Query: 110 KNACLALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           K+  L  +  +   K           +  + +    P  C +      W       K  V
Sbjct: 417 KDIVLLKDKPDFYLKDPWLSQLDWTTKPLRLTKKGVPAKCQKLPGFPEWYRQLFPSKDTV 476

Query: 168 EATRELFKRLIPLSDGE-RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           E    +  R+IP+      +   +     + G+  ++    +  E    +   L + + +
Sbjct: 477 EPKITIKSRIIPILFKLSWENSPV-IWSKESGWCFNVP--HEQVETYKAKNYVLADSVSQ 533

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNI---TQLAKDLI 278
             +  IR+  Q       LF +   +       ++   +         +   ++LA   +
Sbjct: 534 -EEEEIRTHNQGLQCTGVLFKVPHPNGPTFNCTNLLTKSYNHFFEKGVLKSESELAHQAL 592

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
               + S     +    S+ V    +     Q   A  +            +P+      
Sbjct: 593 QINSSGSYWMSARERIQSQFVVPSCKFPNEFQSLSAKSSLNNEKTNDLAIIIPKIVPMGT 652

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-- 396
           I  + ++      + A    + S+ +++ + A  G   V AD+   E  + A + G+   
Sbjct: 653 ITRRAVENTWLTASNAKANRIGSE-LKTQVKAPPGYCFVGADVDSEELWI-ASLVGDSIF 710

Query: 397 ---------WKI--KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
                    W         G D++  T  +             R   K+      Y  GA
Sbjct: 711 NVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGCS--------RNEAKIFNYGRIYGAGA 761

Query: 446 KVFKTMASHCGLDL-QQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           K    +       L  + ++ + +        + +   L+ +
Sbjct: 762 KFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKK 803


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 37/233 (15%)

Query: 6   IDIET----RSPQPLPKVGVWAYAEQAVIT--LCAYAWDDEPV--KLWDRTE-------Q 50
           +D ET     +   L ++      EQ  I      +    +P+   +   T+        
Sbjct: 13  LDTETTGFSFNHDELTQIAAAR-MEQGEIVEWFITFVNPGKPIPEDVAHLTDIHDRDVAD 71

Query: 51  SAMPSD----LLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLAR---- 101
           + +P+D    L++++ D  V  VAHN+ F+R    +   G  +    WI +  LAR    
Sbjct: 72  APLPADALAKLVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIALP 129

Query: 102 ---TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP---YDCTRANHVQA 155
              ++ L   ++     L+       +E   A+      G    PP    +         
Sbjct: 130 RMKSHRLLDLVRAFGAPLSTHRADADVEATCAIFRILLAGVAAMPPALVCEIAHMATPDE 189

Query: 156 WQ---LFGEYCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           W    +F ++ ++ +VEA +++ +    LS   R L        +R  ++D D
Sbjct: 190 WSTRMVFEQFARKYEVEANQDVSRETPSLSFSLRALRRDRLGKLERTAKLDAD 242


>gi|262212055|gb|ACY35644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 11/96 (11%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWKIKAFANGEDIYVTTYAKAFNT 419
              R   + S  + +V ADLAGIE R+L+      ++ +        DI+     K    
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQVNADKI-GI 68

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
             + V        K +  A  Y  G +         
Sbjct: 69  SRELV--------KTVTYAFLYGAGDEKIGHSYDKL 96


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +   G+  YA++      A       V +    E    P  L Q L D+ ++ + HN+ 
Sbjct: 380 DIETTGLNWYADRICTVQLAC---GNRVAVVQLPEGHT-PQRLSQILGDQNILKIFHNAR 435

Query: 75  FE-RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKA 130
           F+ R +        +  +   CT  L R               L    +  + K +    
Sbjct: 436 FDLRFMVYHW---SVIPQNVACTLELVRLLNPRERAGHTLREVLERYLAVQIIKDQTCSD 492

Query: 131 LIA 133
              
Sbjct: 493 WTT 495


>gi|190407627|gb|EDV10894.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae RM11-1a]
          Length = 1254

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKI--KAFANGED 407
              +++ + A  G   V AD+   E  + A + G+            W         G D
Sbjct: 674 GSELKTQVKAPPGYCFVGADVDSEELWI-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTD 732

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-QQFSQNV 466
           ++  T  +             R   K+      Y  GAK    +       L  + ++ +
Sbjct: 733 LHTKTA-QILGCS--------RNEAKIFNYGRIYGAGAKFASQLLKRFNPSLTDEETKKI 783

Query: 467 KSTSTFEDWEQAESHHLWMQ 486
            +        + +   L+ +
Sbjct: 784 ANKLYENTKGKTKRSKLFKK 803


>gi|151945409|gb|EDN63652.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae YJM789]
 gi|207340866|gb|EDZ69085.1| YOR330Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1280

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKI--KAFANGED 407
              +++ + A  G   V AD+   E  + A + G+            W         G D
Sbjct: 700 GSELKTQVKAPPGYCFVGADVDSEELWI-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTD 758

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-QQFSQNV 466
           ++  T  +             R   K+      Y  GAK    +       L  + ++ +
Sbjct: 759 LHTKTA-QILGCS--------RNEAKIFNYGRIYGAGAKFASQLLKRFNPSLTDEETKKI 809

Query: 467 KSTSTFEDWEQAESHHLWMQ 486
            +        + +   L+ +
Sbjct: 810 ANKLYENTKGKTKRSKLFKK 829


>gi|470326|gb|AAA17543.1| mitochondrial DNA polymerase [Saccharomyces cerevisiae]
          Length = 1254

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKI--KAFANGED 407
              +++ + A  G   V AD+   E  + A + G+            W         G D
Sbjct: 674 GSELKTQVKAPPGYCFVGADVDSEELWI-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTD 732

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-QQFSQNV 466
           ++  T  +             R   K+      Y  GAK    +       L  + ++ +
Sbjct: 733 LHTKTA-QILGCS--------RNEAKIFNYGRIYGAGAKFASQLLKRFNPSLTDEETKKI 783

Query: 467 KSTSTFEDWEQAESHHLWMQ 486
            +        + +   L+ +
Sbjct: 784 ANKLYENTKGKTKRSKLFKK 803


>gi|1420721|emb|CAA99652.1| MIP1 [Saccharomyces cerevisiae]
          Length = 1280

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKI--KAFANGED 407
              +++ + A  G   V AD+   E  + A + G+            W         G D
Sbjct: 700 GSELKTQVKAPPGYCFVGADVDSEELWI-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTD 758

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-QQFSQNV 466
           ++  T  +             R   K+      Y  GAK    +       L  + ++ +
Sbjct: 759 LHTKTA-QILGCS--------RNEAKIFNYGRIYGAGAKFASQLLKRFNPSLTDEETKKI 809

Query: 467 KSTSTFEDWEQAESHHLWMQ 486
            +        + +   L+ +
Sbjct: 810 ANKLYENTKGKTKRSKLFKK 829


>gi|83578108|ref|NP_014975.2| Mip1p [Saccharomyces cerevisiae S288c]
 gi|1706509|sp|P15801|DPOG_YEAST RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1163066|emb|CAA89977.1| MIP1 [Saccharomyces cerevisiae]
 gi|285815200|tpg|DAA11093.1| TPA: Mip1p [Saccharomyces cerevisiae S288c]
          Length = 1254

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKI--KAFANGED 407
              +++ + A  G   V AD+   E  + A + G+            W         G D
Sbjct: 674 GSELKTQVKAPPGYCFVGADVDSEELWI-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTD 732

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-QQFSQNV 466
           ++  T  +             R   K+      Y  GAK    +       L  + ++ +
Sbjct: 733 LHTKTA-QILGCS--------RNEAKIFNYGRIYGAGAKFASQLLKRFNPSLTDEETKKI 783

Query: 467 KSTSTFEDWEQAESHHLWMQ 486
            +        + +   L+ +
Sbjct: 784 ANKLYENTKGKTKRSKLFKK 803


>gi|321462891|gb|EFX73911.1| hypothetical protein DAPPUDRAFT_226991 [Daphnia pulex]
          Length = 1206

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 31/198 (15%)

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +     PQ +     +   +  T   L       D +G     +  C     G   V AD
Sbjct: 791 TYGAILPQIVTSGTLTRRAVESTW--LTASNAYKDRIGSELKAMIQC---PPGFNFVGAD 845

Query: 381 LAGIEARVLAWIAGED--------------WKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
           +   E  + A I G+                     ++G D++  T A        +++ 
Sbjct: 846 VDSQELWI-ASIIGDSFFAGQHGSTAFGWMTLQGKKSDGTDMHSRTAAAV------EIT- 897

Query: 427 EQRAIGKVMELALGYQGGAKVFKT--MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
             R   K++     Y  G +  +T  M  +  L  ++ S+  +   +            +
Sbjct: 898 --RDQAKILNYGRIYGAGERFARTLLMQFNHRLTEKEASEKARKMYSLTKGNSLLKLSHY 955

Query: 485 MQDQYPEFAVKDKLIGTA 502
            +        KD+L+   
Sbjct: 956 GRQLASASGNKDELVTLE 973


>gi|242009894|ref|XP_002425717.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
 gi|212509618|gb|EEB12979.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
          Length = 1124

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 22/133 (16%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-------------WKIKAFANGED 407
              +R+ + A +G  +V AD+   E  + A +                       +N  D
Sbjct: 760 GSELRALVQAPSGYHIVGADVDSQELWIAALLGDSTYAKVHGCTPLGWMTLQGTKSNESD 819

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T                R   K++  A  Y  G K  + +       L +     K
Sbjct: 820 MHSRTAKAI-GIS--------RDHAKILNYARIYGAGVKFAQKLLQQFNPLLNESDALKK 870

Query: 468 STSTFEDWEQAES 480
           +T  ++  +  + 
Sbjct: 871 ATKIYQYTKGVKR 883



 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 83/266 (31%), Gaps = 30/266 (11%)

Query: 46  DRTEQ-SAMPSDLLQY-----LRDETV----MCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           D  E   ++P+          L D+      + V HN  ++R   K+    +  + R++ 
Sbjct: 242 DLAEGIDSLPTQFYTAEKLIPLGDKNKTNPAIVVGHNVSYDRSKIKEQYSFESNAVRFLD 301

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALI------ARFCKGSIDSPPYDC-- 147
           T  +    G     KN    LN +       E   LI        +C   I     D   
Sbjct: 302 TMAIHTCIG--GINKNQTKDLNETSIFNDSSEVFCLISLRDMYKLYCGREISKTERDVFV 359

Query: 148 --TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
             +  +    ++    YC +D  AT E+ +++ P+        +    + +         
Sbjct: 360 KGSILDIKNDFENLMSYCSKDTIATFEILQKIFPIFLNRFPHPVTLAGMLEMSVAFLPVT 419

Query: 206 V--LKLQELIAQERKKLDEDIVKLTDGIIRSS-----RQTYALRMYLFLITG-IDLVDMS 257
               K      Q  + L  ++  +       +        +   ++L+     I  + ++
Sbjct: 420 SNWKKFILEADQTYEDLKNEMSLILSRKSDLACRLFHNDEFKKDLWLWDENWSIQNLKLT 479

Query: 258 EGTLKSILSHSNITQLAKDLILNRLA 283
           +  + +    +      +D +  +  
Sbjct: 480 KKKVPNNNETNVKVTAKEDALNEKFQ 505


>gi|269975269|gb|ACZ55493.1| putative DNA polymerase [Staphylococcus phage SA1]
          Length = 910

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 59/424 (13%), Positives = 112/424 (26%), Gaps = 77/424 (18%)

Query: 254 VDMSEGTLKSILSHSNITQLAKDLIL-NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
             ++E +    +      ++AK   L +R  +  ++          +  DGRL      +
Sbjct: 508 PKLTESSY-DTIEGELGQKIAKYYTLMHRRRTIENSKDDEKGWLNQIRPDGRLSAGAMVF 566

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G + TGR +       N+P                           +    +R      +
Sbjct: 567 G-TSTGRMTQYGI--VNVPSGA-----------------------AVYGAPMREVWTCED 600

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID---------- 422
           G  ++  D    +  +L    G++   KA   G++      +  F    D          
Sbjct: 601 GTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE------SVEFTKQEDGRYYCKHLDK 654

Query: 423 ----KVSKEQRAIGK-----------VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
               +  K  R   +              L   Y G  K    +      D +   +  K
Sbjct: 655 YLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIYFGLNKEEDIVRCRETQDEELLHEITK 714

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                ++   A       +             G    L K+ +  +   + +L   L E 
Sbjct: 715 GRKKSKNGIYALLFGAGDEKFAKTIKASSTEEGA---LTKQTYFVRLPKIKKLLDRLEED 771

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
           F    +    +  +  A      ++     +    P    L Y+ +  +    N   +  
Sbjct: 772 FKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL-LNYTLMGSEAQVQNEGINLA 830

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            RE T       N                    G   V + HDE+  E P      V  +
Sbjct: 831 NRELTERKLTVLN--------------GRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEI 876

Query: 648 CSLM 651
              M
Sbjct: 877 IDRM 880


>gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4]
          Length = 299

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 15/197 (7%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGLPSSLKNAC 113
             + +    +      HN+ F+  L K +LGI            +      LPS      
Sbjct: 83  EGIKRVFESDKATVW-HNATFDMGLAKASLGIAPRTPVHDTLILMHLLDEDLPSYQLKVL 141

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----VQAWQLFGEYCKRDVEA 169
                +      EE     A+F   +++   +   +  +    +  WQL         + 
Sbjct: 142 ATRFLNIPSDTFEEMFGKNAKFADIAVEIARWYAGKDTYVGFLLFEWQLNILNKPSFAKI 201

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            +++++R+      ER   +    +   G+ I+++ V   ++    E +++   +     
Sbjct: 202 -KKVYERI------ERPCIMATFEMESEGFHINMEEVEVQRKESEAELEEISARLQARFG 254

Query: 230 GIIRSSRQTYALRMYLF 246
            +  S      L   L+
Sbjct: 255 DVNFS--SPSQLLKLLY 269


>gi|255713056|ref|XP_002552810.1| KLTH0D01980p [Lachancea thermotolerans]
 gi|238934190|emb|CAR22372.1| KLTH0D01980p [Lachancea thermotolerans]
          Length = 1223

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 21/114 (18%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG----------EDWKI--KAFANGEDI 408
              +++ + A  G   V AD+   E  + + ++             W     + + G D+
Sbjct: 650 GSELKAQVQAPPGYVFVGADVDSEELWIASLVSDSVFNIHGGTPIGWMCLEGSKSEGTDM 709

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           +  T  +             R   K+      Y  G K    +  +    L  +
Sbjct: 710 HTKTA-QILGCS--------RNEAKIFNYGRIYGAGVKFATQLLKNFNPGLTDY 754


>gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M N  K     G     V+ VHDE++ + P     ++  +  S+M   
Sbjct: 15  IQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFDVPADELETIXKIVPSVMQAA 74

Query: 655 PSWAKGLPLKAE-GYEAKRY 673
                 +PL A+ G+    Y
Sbjct: 75  VK--LDVPLVADAGWGHDWY 92


>gi|73958203|ref|XP_852066.1| PREDICTED: similar to Mitotic spindle assembly checkpoint protein
           MAD1 (Mitotic arrest deficient-like protein 1)
           (MAD1-like 1) (Mitotic checkpoint MAD1 protein-homolog)
           (HsMAD1) (hMAD1) (Tax binding protein-181) [Canis
           familiaris]
          Length = 833

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 105/328 (32%), Gaps = 19/328 (5%)

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP-------PYDCTRANHVQAWQLFGEYCKRDV 167
             +      +++E  AL  + C+ +                +   ++  +      ++D 
Sbjct: 296 VKSLESEKQELKEQLALQHKKCQEANQKVQELQAIQEARADQEQRIRDLEQKLSLQEQDA 355

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTI-NDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              + +   L+ L   ER+L  L +     R  R    L+ +  E + +   + ++    
Sbjct: 356 SVVKNMKSELMRLPKMERELKQLREESAYLREMRETNGLLREELEGLRRRLGRQEKMQES 415

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L    +   R    L+ +  L        +S  T + +       Q  +  + +R  +  
Sbjct: 416 LVVLELEKERLLAKLQSWEQLEQ---STGLSIRTPEDLSRFVVDLQQRELALQDRNNAIT 472

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S+   L  + + +  +  +R         R  R +      +   R     +        
Sbjct: 473 SSARGLEKVRQQLQEE--VRQVSSQLLEERKKRETQEALARRLQKRVLLLTKERDGMRAI 530

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV---LAWIAGEDWKIKAFA 403
           L   ++       +    R    A +  + V A  + IEA++   L  + G+  +     
Sbjct: 531 LGSYDSELTSAEYSPQLTRRMREAEDMVQKVHAHSSEIEAQLSQALEELGGQKQRADMLE 590

Query: 404 NGEDI---YVTTYAKAFNTPIDKVSKEQ 428
               +     +T  ++F    ++VS  +
Sbjct: 591 MEVKMLQSQSSTAEQSFPLSREEVSSLR 618


>gi|164655431|ref|XP_001728845.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
 gi|159102731|gb|EDP41631.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
          Length = 1518

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 80/292 (27%), Gaps = 83/292 (28%)

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED------------WKIKAFANGEDI 408
               ++S + AS G  +V AD+   E  + + +                    + A G D+
Sbjct: 944  GSELKSMVKASPGWSIVGADVDSEELWICSVMGDAQFGIHGATAIGWMTLEGSKAQGTDL 1003

Query: 409  YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +  T +    T         R   KV   +  Y  G +    +       +         
Sbjct: 1004 HSKTAS-ILGTS--------RDQAKVFNYSRIYGAGIRHAMQLLLKANPSM--------- 1045

Query: 469  TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                      E+     Q          +         K   R       + W   TE F
Sbjct: 1046 -------PVDEASRRAKQLYAATKGQNTRSQ-------KYFGR-------RFWYGGTESF 1084

Query: 529  ACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                 E  ++S   R  A    +     K+ +               +G           
Sbjct: 1085 VFNKLEEIALSEQPRTPALDCGITAALSKQFL------------PKTRGSA--------- 1123

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYDI----VLTVHDEI 632
               ++ Y       +VQ+   D L   + + T     YDI    +L+VHDE+
Sbjct: 1124 ---QQDYMPSRINWVVQSSGVDYLHLLITSMTHLCKTYDIEARFMLSVHDEV 1172


>gi|149408172|ref|YP_001294606.1| hypothetical protein ORF013 [Pseudomonas phage PA11]
          Length = 624

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 108/396 (27%), Gaps = 59/396 (14%)

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL---- 279
           +  + D    +      ++ +L+   G      +    K       I Q+ +D  L    
Sbjct: 247 VEYIKDWKEPNPGSHEQIKSWLYS-LGWVPETFAYKRNKETGEVKKIEQVQQDKTLGPGL 305

Query: 280 ----NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
                +L      +  L+ LS        L G L                + Q L    R
Sbjct: 306 CASVKKLYGKEPKLEILDGLSILTHRISVLNGFLNNVDDE-----GYVQAKVQGLTNTLR 360

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA-- 393
            +  +   +  +++              +R C++A  G +LV +D++ +E R        
Sbjct: 361 FKHEVVVNLPGVDK---------PYGADIRGCLVAPKGYELVGSDMSSLEDRCKQHYMWP 411

Query: 394 -GEDWKIKAFANGEDIYVTTY---------------AKAFNTPIDKVSKEQRAIGKVMEL 437
              ++  +      D ++                  A       + + K  R + K +  
Sbjct: 412 YDPEYVKEMIKPDFDPHLDLAVFAGALSSHEVELYKAGFLKKEEEGLVKAIRKVYKSVNY 471

Query: 438 ALGYQGGAKVFKTMAS----HCGLDLQQFSQN---VKSTSTFEDWEQAESHHL------- 483
           A  Y  G       A          +  + Q    VK  +  +  +              
Sbjct: 472 ACVYGAGGPRVAITAGVTMDEGYKLVDAYWQRNWSVKRIAEDQIVKVCNGMKWLFNPVSG 531

Query: 484 -WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            W   ++ +        GT         R   +   QL     +     +++G      +
Sbjct: 532 FWYSLRHEKDRFSTLNQGTGVYCFDTWVRHIREERPQLTAQFHDEVVLCIRKG---FREQ 588

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +    M +  + +++       + Y D   D  
Sbjct: 589 CTALLHRAMDKTNKFLNLNRELECSIEYGDSYSDIH 624


>gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
 gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
          Length = 204

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            D    L    +    P  L + L D  V  + H + F+  +    LG+        CT 
Sbjct: 44  GDGEADLVQIAKGGPEPVVLKRVLTDPAVTKIFHFARFDLAVLFHRLGV--MPGPIYCTK 101

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKAL 131
           V +R +   +    LK+    L     ++K ++    
Sbjct: 102 VASRLSRTYTDRHGLKDLVREL-LGIEISKQQQSSDW 137


>gi|225626336|ref|YP_002727832.1| hypothetical protein PPphikF77_gp13 [Pseudomonas phage phikF77]
 gi|225594845|emb|CAX63127.1| hypothetical protein [Pseudomonas phage phikF77]
          Length = 269

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +D+Y    +  F+ P  +V+ E R + K    A  Y
Sbjct: 4   KDLYTNLASDMFSVPCSQVTPEMRRVAKSRAFAHAY 39


>gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
 gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
          Length = 203

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 22/154 (14%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            ID ET   +P+               LC   ++  D    L           +L + L 
Sbjct: 21  AIDSETMGLRPIRD------------RLCVVQFSSGDGTAHLVQFAPGEYDAPNLTRMLT 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFS 119
           D  V+ + H + F+  + +  LG+        CT + ++     +    LK+ C  L   
Sbjct: 69  DPDVLKLFHFARFDVAVLQAFLGVATAP--IYCTKIASKLVRTYTDRHGLKDLCREL-IG 125

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             L+K ++     A   + + +   Y  +   H+
Sbjct: 126 VDLSKQQQSSDWGA--AELTAEQLAYAASDVLHL 157


>gi|167600455|ref|YP_001671954.1| hypothetical protein PPLUZ19_gp12 [Pseudomonas phage LUZ19]
 gi|161168318|emb|CAP45482.1| hypothetical protein [Pseudomonas phage LUZ19]
          Length = 269

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +D+Y    +  FN P  +V+ E R + K    A  Y
Sbjct: 4   KDLYTNLASGMFNVPCSQVTPEMRRVAKSRAFAHAY 39


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------D 46
           M  + ID ET            L  V      E+    +       +P+ +W       D
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 47  RTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICT--SV 98
              +   + +  ++  Y+    V+  AHN+ F+  + +KTL           + CT    
Sbjct: 61  VENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 99  LARTNGLPSS-LKNACLALNFS 119
                 LP+  L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------D 46
           M  + ID ET            L  V      E+    +       +P+ +W       D
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 47  RTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICT--SV 98
              +   + +  ++  Y+    V+  AHN+ F+  + +KTL           + CT    
Sbjct: 61  VENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 99  LARTNGLPSS-LKNACLALNFS 119
                 LP+  L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|33300823|ref|NP_877451.1| putative DNA binding protein [Pseudomonas phage phiKMV]
 gi|195546653|ref|YP_002117734.1| putative DNA-binding protein [Pseudomonas phage PT5]
 gi|195546715|ref|YP_002117793.1| putative DNA binding protein [Pseudomonas phage PT2]
 gi|33284794|emb|CAD44203.1| putative DNA binding protein [Enterobacteria phage phiKMV]
 gi|158187614|gb|ABW23091.1| putative DNA-binding protein [Pseudomonas phage PT5]
 gi|165880724|gb|ABY70979.1| putative DNA binding protein [Pseudomonas phage PT2]
          Length = 269

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           +D+Y    +  F+ P  +V+ E R + K    A  Y
Sbjct: 4   KDLYTNLASDMFSVPCSQVTPEMRRVAKSRAFAHAY 39


>gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +         P  L   L D  V+ + H + F+  +  + LG+        CT 
Sbjct: 49  GDGSADVVQIRPGDPEPVRLKAILADPGVLKIFHFARFDLAVLFRALGV--MPAPVYCTK 106

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
             S LART      LK+    L     L+K ++    
Sbjct: 107 VASKLARTYTDRHGLKDVVREL-VGVDLSKQQQSSDW 142


>gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 25/141 (17%)

Query: 1   MSKLFIDIETR-------SPQPLP--KVGVWAYAEQAVITL-------CAYAWDD-EPVK 43
           M  + ID ET            L     GV    E   I            A+    P +
Sbjct: 8   MHAVAIDFETANEQRASPCSIGLAWINDGVIESVEHHYIRPPGMRFASFNIAFHGIGPEQ 67

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
           + D  E  A+ + +   L   TV+  AHN+ F+  + +      G+  P   ++CT  LA
Sbjct: 68  VEDAEEFPAVLAAIAPRLEGRTVL--AHNAAFDVSVIRNTCDHYGLTYPEFDYLCTVKLA 125

Query: 101 RTN--GLPSS-LKNACLALNF 118
           + +    PS  L N C  L  
Sbjct: 126 QISWPEFPSHKLNNVCAELGV 146


>gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
 gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 31/193 (16%)

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTF 472
            N P+  V    R   K +  ++ Y  G +   T     A+     +  F +     S F
Sbjct: 1   MNVPLGSVQTADRERTKRVVYSIMYGVGPEKLATYLNVSAAESKGFISSFLRRFPGVSRF 60

Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW- 510
                                      +S + +++ Q    AV   + G+A ++ K A  
Sbjct: 61  THKCKEECKAKGHVRTILKRWRLIPNIKSPNFFLRSQAERQAVNFVVQGSAADICKLAMI 120

Query: 511 ----RAKHQGVL-QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               R   +G+  +L   L +     V +    S + V              + + +P  
Sbjct: 121 LVGKRLAEEGLKAKLLIQLHDELVFEVADEEVDSVKGVVRDIMQSDALLGGQIKLQVPLR 180

Query: 566 RRLVYSDVKGDCS 578
             +      G  +
Sbjct: 181 VSVSVGKSWGRMT 193


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           D  +   +P + L  L  E  + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 DMVKGQTIPREKLDALIAEADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------D 46
           M  + ID ET            L  V      E+    +       +P+ +W       D
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 47  RTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICT--SV 98
              +   + +  ++  Y+    V+  AHN+ F+  + +KTL           + CT    
Sbjct: 61  VENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 99  LARTNGLPSS-LKNACLALNFS 119
                 LP+  L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------D 46
           M  + ID ET            L  V      E+    +       +P+ +W       D
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 47  RTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICT--SV 98
              +   + +  ++  Y+    V+  AHN+ F+  + +KTL           + CT    
Sbjct: 61  VENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 99  LARTNGLPSS-LKNACLALNFS 119
                 LP+  L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
 gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
          Length = 204

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D   +L    +      +L++ L D  V+ + H + F+  +  KT G+        C
Sbjct: 42  SIGDGDAELVQIAKGQTQAENLVKLLVDPKVLKLFHFARFDMGILAKTFGV--MPAPVYC 99

Query: 96  TSVLA-RTNGLPSSLKNACLALNF-SEHLTKMEEGKAL 131
           T + +  T           LA       ++K ++    
Sbjct: 100 TKIASKLTRTYTDRHGLKDLARELAGVEISKQQQSSDW 137


>gi|156742984|ref|YP_001433113.1| exonuclease-like protein [Roseiflexus castenholzii DSM 13941]
 gi|156234312|gb|ABU59095.1| exonuclease-like protein [Roseiflexus castenholzii DSM 13941]
          Length = 168

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M   ++DIET     +  +G++               D   ++L          + L   
Sbjct: 1   MRA-YLDIETAFDGAISVIGIYRS-------------DFGAIQLI---GGGVRDTALYDA 43

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT-SVLARTNGLPSSLKNACLALNF 118
           L     +   + S F+  + +K L +D+      C    + R  GL   LK     L  
Sbjct: 44  LEGVNTLVTFNGSSFDLPVIRKRLLVDLKRDFDHCDLMHICRRRGLRGGLKVVEEHLGI 102


>gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTS 97
           +  V L          S+L + L D ++  + H + F+    +  LGI  IP       S
Sbjct: 45  NGNVHLVKFPSTEYQASNLKKILSDLSITKIFHFARFDITAIRYYLGIWAIPCYCTKIAS 104

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
            LART      LK  C  L     L K+++              +  Y  +   H+ A +
Sbjct: 105 KLARTYTDHHGLKELCNEL-LGIKLNKVQQSSDWGKEVLTSEQLN--YAASDVIHLHALK 161

Query: 158 LFGEYCKRDVEATRELFKRL 177
                 K D    RE  + L
Sbjct: 162 -----SKLDAMLERENKQEL 176


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 86/233 (36%), Gaps = 37/233 (15%)

Query: 6   IDIET----RSPQPLPKVGVWAYAEQAVIT--LCAYAWDDEPV--KLWDRTE-------Q 50
           +D ET     +   L ++      EQ  I      +    +P+   +   T+        
Sbjct: 45  LDTETTGFSFNHDELTQIAAAR-MEQGEIVEWFITFVNPGKPIPEDVAHLTDIHDSDVAD 103

Query: 51  SAMPSD----LLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLAR---- 101
           + +P+D    L++++ D  V  VAHN+ F+R    +   G  +    WI +  LAR    
Sbjct: 104 APLPADALAKLVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIALP 161

Query: 102 ---TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP---YDCTRANHVQA 155
              ++ L   ++     L+       +E   A+      G    PP    +         
Sbjct: 162 RMKSHRLLDLVRAFGAPLSTHRADADVEATCAIFRILLAGVAAMPPALVCEIAHMATPDE 221

Query: 156 WQ---LFGEYCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           W    +F ++ ++ +VEA +++ +    L    R L        +R  ++D D
Sbjct: 222 WSTRMVFEQFARKYEVEANQDVSRETPSLRFSLRALRRDRLGKLERAAKLDAD 274


>gi|259149807|emb|CAY86611.1| Mip1p [Saccharomyces cerevisiae EC1118]
          Length = 1280

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 24/140 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKI--KAFANGED 407
              +++ + A  G   V AD+   E  + A + G+            W         G D
Sbjct: 700 GSELKTQVKAPPGYCFVGADVDSEELWI-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTD 758

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-QQFSQNV 466
           ++  T  +             R   K+      Y  G K    +       L  + ++ +
Sbjct: 759 LHTKTA-QILGCS--------RNEAKIFNYGRIYGAGTKFASQLLKRFNPSLTDEETKKI 809

Query: 467 KSTSTFEDWEQAESHHLWMQ 486
            +        + +   L+ +
Sbjct: 810 ANKLYENTKGKTKRSKLFKK 829


>gi|150865746|ref|XP_001385083.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149387002|gb|ABN67054.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 1061

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 27/182 (14%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKIKAFANGE--D 407
              ++S I A  G   V AD+   E  + A + G+            W        E  D
Sbjct: 676 GSELKSLIEAPPGYCFVGADVDSEELWI-ASLVGDSMFKIHGGTALGWMNLEGDKHEKTD 734

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T  +             R   KV      Y  G K    +       L +      
Sbjct: 735 LHSKTA-EILGIS--------RGDAKVFNYGRIYGAGVKFATRLLKQFNSKLSEAEAEET 785

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
           +   +   +   S   +++ +      +  +   A E +      K+     L   +T  
Sbjct: 786 AKLLYARTKGEMSSSKYLKRRLYHGGTESVMF-NALESIAY---QKNPRTPVLGAAITSA 841

Query: 528 FA 529
             
Sbjct: 842 LT 843


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +    +    P  L + L D  ++ + H + F+  +  + LG+        C
Sbjct: 45  STGDGTADVVQIPQAGPEPVVLKRVLADPGILKIFHFARFDVAVLYRALGV--MPSPVYC 102

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           T   S LART      LK+    L     L+K ++    
Sbjct: 103 TKIASKLARTYTDRHGLKDVVREL-VGVDLSKQQQSSDW 140


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKN 654
           +Q  + DI    M            G+ ++L VHDE++ E P +T   +   + + M   
Sbjct: 385 IQGSAADIATAAMLRINEDEALQSMGWRLLLQVHDEVILEGPRETAELARERVVACMRSP 444



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 26/114 (22%)

Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ------ 477
           +R   KV+  ++ Y     G +K +K         + ++  +      ++D ++      
Sbjct: 289 ERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEAKDTVDRWYADRPEIRKWQDEQRRQAQQR 348

Query: 478 ----------------AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                           A S +   Q      A+   + G+A ++   A    ++
Sbjct: 349 GYVTTILGRRRQLPDAALSRNRAAQSHALRAAINTPIQGSAADIATAAMLRINE 402


>gi|190345004|gb|EDK36807.2| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-------------WKIKAFAN 404
                 +++ I A  G   V AD+   E  + A + G+                      
Sbjct: 669 NRIGSELKAMIEAPQGYAFVGADVDSEELWI-ASLVGDSMFKIHGGTALGWMTLEGDKNE 727

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G D++  T  +             R   KV      Y  G K   T+      +L   +
Sbjct: 728 GTDLHSKTA-EILGIS--------RNDAKVFNYGRIYGAGVKFATTLLKQFNSELTDAA 777


>gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
 gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
          Length = 204

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +    +    P  L + L D  V  + H + F+  +    LG+        C
Sbjct: 42  SHGDGEADVVQIPKIGPEPVVLKRVLTDPAVTKIFHYARFDLAVLYHRLGV--MPGPVYC 99

Query: 96  TSV---LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T V   LART      LK+    L     L+K ++     A     +     Y  +   H
Sbjct: 100 TKVASRLARTYTDRHGLKDLVREL-LGVELSKQQQSSDWGA--DTLTPAQIDYAASDVLH 156

Query: 153 V 153
           +
Sbjct: 157 L 157


>gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 183

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSVLART 102
            +  ++  YLRD  V+ VAHN+ F+    + TL +         + C+   AR 
Sbjct: 72  KVWEEITTYLRDCPVL-VAHNAAFDMSCIRHTLQLHHLPCPDIDYYCSLRAARH 124


>gi|146423193|ref|XP_001487528.1| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-------------WKIKAFAN 404
                 +++ I A  G   V AD+   E  + A + G+                      
Sbjct: 669 NRIGSELKAMIEAPQGYAFVGADVDSEELWI-ASLVGDSMFKIHGGTALGWMTLEGDKNE 727

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G D++  T  +             R   KV      Y  G K   T+      +L   +
Sbjct: 728 GTDLHSKTA-EILGI--------LRNDAKVFNYGRIYGAGVKFATTLLKQFNSELTDAA 777


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 20/139 (14%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +D+ET        +    V+        E    TL     D  PV +   T  +   + L
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDALEGAPL 85

Query: 58  LQYLRDE------TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPSS 108
            Q + DE        + VAHN++F+  +  +     G   P  + +CT VL++  GLP  
Sbjct: 86  FQDIADEFSSRLDGRVLVAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVLSKELGLPLP 145

Query: 109 ---LKNACLALNFSEHLTK 124
              L++        +    
Sbjct: 146 NHKLESLAAHFGVVQQRAH 164


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------D 46
           M  + ID ET            L  V      E+    +       +P+ +W       D
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 47  RTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICT--SV 98
              +   + +  ++  Y+    V+  AHN+ F+  + +KTL           + CT    
Sbjct: 61  VENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 99  LARTNGLPSS-LKNACLALNFS 119
                 LP+  L     AL+F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALDFE 140


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------D 46
           M  + ID ET            L  V      E+    +       +P+ +W       D
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 47  RTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICT--SV 98
              +   + +  ++  Y+    V+  AHN+ F+  + +KTL           + CT    
Sbjct: 61  VENERTFNEIWKEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 99  LARTNGLPSS-LKNACLALNFS 119
                 LP+  L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|50286981|ref|XP_445920.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525226|emb|CAG58839.1| unnamed protein product [Candida glabrata]
          Length = 1284

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 29/137 (21%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEA-----------RV-----LAWIAGEDWKIKAFAN 404
              +++ I A  G   V AD+   E            R+     + W+  E  K    A 
Sbjct: 700 GSELKAQICAPEGYSFVGADVDSEELWIASLFGDSVLRIHGGTPIGWMCLEGTK----AE 755

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T          ++    R   K+      Y  G K    +       L +   
Sbjct: 756 GSDLHTKTA---------QILSCDRNEAKIFNYGRIYGAGVKFASQLLKKFNPTLSEKEA 806

Query: 465 NVKSTSTFEDWEQAESH 481
              +   +E  +     
Sbjct: 807 KETAVKLYESTKGKTKR 823


>gi|71019835|ref|XP_760148.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
 gi|46099778|gb|EAK85011.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
          Length = 2098

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 80/292 (27%)

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED----------WK-IKAFAN-GEDI 408
               +++ + A  G  LV AD+   E  + + +              W  ++     G D+
Sbjct: 1116 GSELKAMVKAPPGYSLVGADVDSEELWICSVMGDAQFGIHGATAVGWMTLEGTKALGTDL 1175

Query: 409  YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +  T +    T         R   KV   +  Y  G K    +       +       K+
Sbjct: 1176 HSKTAS-ILGTS--------RNQAKVFNYSRIYGAGIKHATHLLLKANPSVSNEEATQKA 1226

Query: 469  TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
               +   +   +H              D+  G                  + W   TE +
Sbjct: 1227 KELYMATKGQNTH-------------TDEFFG-----------------AKFWFGGTESY 1256

Query: 529  ACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                 E  ++S   +  A    +     K+ +                G   + N     
Sbjct: 1257 VFNKLESIALSDNPKTPALDCGVTNALTKKFL----------------GKVDFGNG---- 1296

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMKNAT--KNGYDI----VLTVHDEI 632
                  Y       +VQ+   D L   +         Y I    +L+VHDE+
Sbjct: 1297 -RLSEEYMPSRINWVVQSSGVDYLHLLITAMEWLSKRYSIDARFMLSVHDEV 1347


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN 103
           E   +   +  Y  D  V+  AHN+ F+  + +K+     I++P   +ICT  LAR  
Sbjct: 66  EFDKVWEKIKHYFDDTLVI--AHNASFDISVLRKSAELYNIELPEFNYICTMKLARNF 121


>gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-KRWI 94
           +  D    +    +      +L++ L D  V  + H + F+  + +K LG+         
Sbjct: 42  SAGDGHAHVVHYPKPEWNSPNLVRMLADPKVTKLFHFARFDVAMIRKYLGVRCNPLFCTK 101

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
             S L RTN    SLK  C     +  L+K+++    
Sbjct: 102 IASKLTRTNTEGHSLKVLCKEF-LNIDLSKLQQSSDW 137


>gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 234

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 26/174 (14%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +++D    L         P+ L + L D+ +  + H + F+  + +  L          C
Sbjct: 72  SFNDGNAHLVQLKNDYTAPN-LRKILEDKNITKIFHFARFDVSIIRYYLETWALPC--YC 128

Query: 96  TSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T + +R     +   SLK  CL L     L K ++                  D    N 
Sbjct: 129 TKIASRLVRTYTDNHSLKELCLEL-LDTKLNKQQQSS----------------DWGNENL 171

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    Y   DV     + ++L  + + E    L  +       RI+LDL+
Sbjct: 172 TDK---QKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLM 222


>gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 203

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +    +      +L++ L D  V  + H + F+  + ++ LG+        C
Sbjct: 42  SAGDGHAHVVHYPKPEWNSPNLVRMLADSKVTKLFHFARFDVAMIRRYLGVRCTP--VFC 99

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T   S L RTN    SLK  C     +  L+K+++                         
Sbjct: 100 TKIASKLTRTNTEGHSLKVLCKEF-LNIDLSKLQQSSDW-------------------GA 139

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
            +       Y   DV    +L  RL  L D E
Sbjct: 140 PELTADQLAYAASDVLYLHQLKDRLDALLDRE 171


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN 103
           E   +   +  Y  D  V+  AHN+ F+  + +K+     I++P   +ICT  LAR  
Sbjct: 77  EFDKVWEKIKHYFDDTLVI--AHNASFDISVLRKSAELYNIELPEFNYICTMKLARNF 132


>gi|170719039|ref|YP_001784196.1| hypothetical protein HSM_0864 [Haemophilus somnus 2336]
 gi|168827168|gb|ACA32539.1| conserved hypothetical protein [Haemophilus somnus 2336]
          Length = 212

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 36/167 (21%)

Query: 29  VITLCAYAWDD-EPVKL----WDRTEQSA-----MPSDLLQYLRDETVMCVAHNS-LFE- 76
            I +   A DD  PV      W   ++           L +++   T + + HN   F+ 
Sbjct: 60  EIVVIGAAVDDTSPVLFYCEDWQLPDRETRILTQFNDWLRKHITKATPLMIGHNITKFDD 119

Query: 77  RILFKKTLGIDIPS------KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA 130
           R +F++++   I             T       G   SL   C  L+  +       G  
Sbjct: 120 RFIFQRSVINRIKPCYTPLRHNIYDTMTEWAGYGNTVSLDKLCKVLDIEQKGDID--GSK 177

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +      G I+                   +YC +DVE  RE++KR+
Sbjct: 178 VWQYIQDGKINEVA----------------QYCAKDVERVREIYKRM 208


>gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120]
 gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120]
          Length = 143

 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           +Q  + DI+ + M        + K    ++L VHDE++ E P+     +  + 
Sbjct: 63  IQGSAADIIKKAMILMSERLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 115


>gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 183

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN-GLPSS 108
           +  ++L YL+ ET + VAHN+ F+    +K+L    +D     + CT   AR +      
Sbjct: 73  VWQEILTYLK-ETPILVAHNAAFDISCIRKSLELYHLDTLDVDYYCTLRAARHHYDFECH 131

Query: 109 -LKNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCT 148
            L   C      E  H    ++ +     F +   D+   + T
Sbjct: 132 TLGYLCEQFEIPEGTHHRAGDDAEMCARLFLREIKDAGWCELT 174


>gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa]
          Length = 161

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
            RRL   D+ G       A     R            +Q  + D++   M          
Sbjct: 53  GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQDWLEGE 103

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
           + G   ++ VHDE+V E P      V   L  LM   
Sbjct: 104 RLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAV 140



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 31/132 (23%)

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM------ 485
           G A             + ++       + + +            E      LW+      
Sbjct: 5   GLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGG 64

Query: 486 ----QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACV 531
               +      A+   + GTA +L+K +           R   + ++Q+  +L       
Sbjct: 65  NGPRRQAAERAAINAPMQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQA 124

Query: 532 VQEGGSISARRV 543
             E   +    +
Sbjct: 125 ELELVRVKLPEL 136


>gi|225022624|ref|ZP_03711816.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944532|gb|EEG25741.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 893

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 6/69 (8%), Positives = 21/69 (30%)

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G  +D+  + +  +       + +     +             L++ LF   
Sbjct: 476 ILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVLFETL 535

Query: 250 GIDLVDMSE 258
           G+     ++
Sbjct: 536 GLPKTKKNQ 544


>gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
 gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
          Length = 209

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +         P  L   L D  ++ + H + F+  +  K  G+        CT 
Sbjct: 49  GDGSADVVQIRPGDPAPERLKAVLADPQIVKIFHFARFDLAVLFKAFGVMPMP--VYCTK 106

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
             S LART      LK+    L     L+K ++    
Sbjct: 107 VASKLARTYTDRHGLKDVVREL-VGVDLSKQQQSSDW 142


>gi|109065845|ref|XP_001102100.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD1 [Macaca
           mulatta]
          Length = 956

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 93/299 (31%), Gaps = 41/299 (13%)

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 K +E    I         S          ++  +      ++D    + +   L
Sbjct: 194 LDLQHKKWQEANQKIQEL----QASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSEL 249

Query: 178 IPLSDGERDLWLL-DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           + L   ER+L  L +++++ R  R    L+ +  E + ++  + ++    L    + + R
Sbjct: 250 VRLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENER 309

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               L+ +  L        +S  T    LS   +    ++L L    S+ ++  +   L 
Sbjct: 310 LLAKLQSWERLDQ---TTGLSIRT-PEDLSRFVVELQQRELALKDKNSAVTSSAR--GLE 363

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +A       R  LQ      +G+                 E    +T +AL R       
Sbjct: 364 KA-------RQQLQEELRQVSGQL--------------LEERKKRETHEALARRLQKRVL 402

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
           L          I+ S   +L  A+ +    R            +A    + ++  +   
Sbjct: 403 LLTKERDGMRAILGSYDSELTSAEYSPQLTR---------RMREAEDMVQKVHSHSAEM 452


>gi|316934310|ref|YP_004109292.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
 gi|315602024|gb|ADU44559.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
          Length = 694

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 31/210 (14%)

Query: 46  DRTEQSAM---PSDLLQYLR--DETVMCVAH-NSLFERILFKKTLGIDIPSKRWICTSVL 99
           D   +      P  + Q L   D+    +AH    ++ ++ +K  G  +       + ++
Sbjct: 27  DLDTKEKFAFGPDQIPQALELLDKADEGIAHFGLGYDFLVLEKLHGFKLKKA--TDSFII 84

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC---TRANHVQAW 156
           A+                       ++ G+       K SI++  Y          ++ W
Sbjct: 85  AKLMRPSQK----------DADTALVKAGRLPGKLHGKHSIEAWGYRLGVQKLHADIEDW 134

Query: 157 QLF----GEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206
             F     E C+ DV+    L+  L P        + E  +  L + +   G   D +  
Sbjct: 135 SEFTPEMQERCESDVDVQDALWDWLKPDAYSQRAIELEHRIARLCRRMEAAGVWFDQEAA 194

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            KL   +  +++ +  D++          +
Sbjct: 195 QKLHVALLGKQEHIANDLIAEFGSWYEPEK 224


>gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
 gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
          Length = 209

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 8/119 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +         P  L   L D  V+ + H + F+  +     G+        CT 
Sbjct: 49  GDGSADVVQIRPGDPAPERLKAVLADAGVVKIFHFARFDLAVLFNAFGV--MPAPVYCTK 106

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             S LART      LK+    L     L+K ++     A     S     Y  +   H+
Sbjct: 107 IASKLARTYTDRHGLKDVVREL-VGVDLSKQQQSSDWGA--GTLSQAQIDYAASDVLHL 162


>gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 203

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 36/194 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        + +        + L  ++  +    L     Q+    +L   L D
Sbjct: 20  LAIDTET------MGLNLHR----DKLCLLQFSNGNGEAHLVHFENQNYTAPNLKALLSD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SVLARTNGLPSSLKNACLALNFSE 120
           ++   + H + F+    KK L I++  +   CT   S L RT      LK+ C  L  + 
Sbjct: 70  KSRCKIFHFARFDLAAIKKYLEIEL--ENIFCTKISSKLVRTYTDSHGLKDLCREL-LNI 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           +++K ++                     RA+++ + Q   EY  +DV    +L   L  +
Sbjct: 127 NISKQQQSSYW-----------------RADNLSSEQ--KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTI 194
              E + + L Q I
Sbjct: 168 LLKE-NRFELAQDI 180


>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 209

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 45/203 (22%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DEPVKLWDRTEQ 50
           S + L    +  Y E   I     A D                     +  V +    + 
Sbjct: 9   SDRDLSDAALGQYLESTAI-----AVDTETMGLLPQRDRLCLVQLCNLEGKVTVIRIAKG 63

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
                +L +      V+ V H + F+    +  LGI +      CT +            
Sbjct: 64  QTEAPNLKKLFEAANVVKVFHFARFDIATLRANLGIQVSP--VFCTKI-----------A 110

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +       + H  K      ++    K  +D         N V   +    Y   DV   
Sbjct: 111 SKLARTYTNRHGLKD-----VVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYL 165

Query: 171 RELFKRLIPLSDGERDLWLLDQT 193
             + ++L  +   E   W + Q 
Sbjct: 166 LSVQQKLTEMLKREER-WKIAQE 187


>gi|260939924|ref|XP_002614262.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
 gi|238852156|gb|EEQ41620.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
          Length = 930

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 23/152 (15%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKIKAFANGE--D 407
              ++S I A  G   V AD+   E  + A + G+            W        +  D
Sbjct: 366 GSELKSLIEAPKGYVFVGADVDSEELWI-ASLIGDSMFKIHGGTALGWMTLEGDKNQKTD 424

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T                R   KV      Y  G K    +   C  +L        
Sbjct: 425 LHSKTA-DIMGIS--------RNDAKVFNYGRIYGAGVKFATRLLKQCNANLSDAEAERL 475

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
           +   +E  +   SH    + +      +  + 
Sbjct: 476 AKELYEKTKGLASHSKIFKRRVYHGGSESVMF 507


>gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi]
 gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi]
          Length = 206

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 26/174 (14%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +++D    L         P+ L + L D+ +  + H + F+  + +  L          C
Sbjct: 44  SFNDGNAHLVQLKNDYTAPN-LRKILEDKNITKIFHFARFDVSIIRYYLETWALPC--YC 100

Query: 96  TSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T + +R     +   SLK  CL L     L K ++                         
Sbjct: 101 TKIASRLVRTYTDNHSLKELCLEL-LDTKLNKQQQSSDWGNE------------------ 141

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    Y   DV     + ++L  + + E    L  +       RI+LDL+
Sbjct: 142 -NLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLM 194


>gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
 gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
          Length = 209

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 8/119 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +         P  L   L D  V+ + H + F+  +     G+        CT 
Sbjct: 49  GDGSADVVQIRPGDPAPERLKAVLADAGVVKIFHFARFDLAVLFNAFGV--MPAPVYCTK 106

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             S LART      LK+    L     L+K ++     A     S     Y  +   H+
Sbjct: 107 IASKLARTYTDRHGLKDVVREL-VGVDLSKQQQSSDWGA--GTLSQAQIDYAASDVLHL 162


>gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 206

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 26/174 (14%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +++D    L         P+ L + L D+ +  + H + F+  + +  L          C
Sbjct: 44  SFNDGNAHLVQLKNDYTAPN-LRKILEDKNITKIFHFARFDVSIIRYYLETWALPC--YC 100

Query: 96  TSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T + +R     +   SLK  CL L     L K ++                         
Sbjct: 101 TKIASRLVRTYTDNHSLKELCLEL-LDTKLNKQQQSSDWGNE------------------ 141

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    Y   DV     + ++L  + + E    L  +       RI+LDL+
Sbjct: 142 -NLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLM 194


>gi|328766377|gb|EGF76432.1| hypothetical protein BATDEDRAFT_14887 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1063

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 26/225 (11%)

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           LS   IT   K ++ + +  + + + K    +  +SS  R+ G    + +++        
Sbjct: 574 LSKPYITHFEKGILTSAVPEAQNILEKHAQCTYWISSRARINGQFIVWDSAKQPLGYASH 633

Query: 325 FQPQNL----PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
               N+    P       I  + ++ L    + A    + S+ V+S I+ + G  LV AD
Sbjct: 634 ANDDNIGVILPCTIPMGTITRRAVEPLWMTASNAKENRIGSE-VKSMIMPAKGYSLVGAD 692

Query: 381 LAGIEARVLAWIAGED------------WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +   E  + +                      A A G D++ TT  K             
Sbjct: 693 VDSEELWIASVFGDAQFGQHGSTAIGFMTLQGAKAAGTDLHSTTG-KILGIS-------- 743

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           R   KV      Y  G +    +      +L +     K+   ++
Sbjct: 744 RNQSKVFNYGRIYGAGIRYAVQLLMQGNSNLTREMAEKKAEQLYK 788


>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 57/178 (32%), Gaps = 45/178 (25%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLRDE 64
           +D+ET          V   A +  + + A A DD  PV                + L   
Sbjct: 780 LDVETT-LFDRALCLVQLAAPEYTVVIDARAVDDLGPVS---------------ELLASR 823

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLALNFS 119
            V+ + HN+ FER +F+K LG+DI  +    T  ++R            L   C A    
Sbjct: 824 AVVKIIHNAQFERSVFRK-LGMDI--ENVFDTLKVSRRLRGRKREGGHGLGAVC-ARELG 879

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             L K E+      R                      Q   +Y   D E    L +R 
Sbjct: 880 RELDKHEQRSDWTQR-------------------PLTQRQLDYAALDAEVLLALHERF 918


>gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
 gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
          Length = 209

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +         P  L+  L D  V+ + H + F+  +     G+        CT 
Sbjct: 49  GDGSADVVQIRPGDPAPERLMAVLADAGVVKIFHFARFDLAVLFNAFGV--MPAPVYCTK 106

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             S LART      LK+    L     L+K ++     A     S     Y  +   H+
Sbjct: 107 IASKLARTYTDRHGLKDVVREL-VGVDLSKQQQSSDWGA--GTLSQAQIDYAASDVLHL 162


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D  V L           +L + L D  V  + H + F+  + K  LG+D       C
Sbjct: 47  SAGDGAVHLVQFRPGRYEAPNLKRLLTDPGVTKLFHFARFDVAVMKAYLGVDCRP--VYC 104

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           T   S L RT      LK+ C  L     ++K ++    
Sbjct: 105 TKVASKLVRTFTDRHGLKDLCKDL-LGVEISKQQQSSDW 142


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------D 46
           M  + ID ET            L  V      E+    +       +P+ +W       D
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 47  RTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICT--SV 98
              +   + +  ++  Y+    V+  AHN+ F+  + +K      I  P   + CT    
Sbjct: 61  VENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDILYPDFEYACTVVMA 118

Query: 99  LARTNGLPSS-LKNACLALNFS 119
                 LP+  L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|326536930|ref|YP_004306337.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
 gi|318054506|gb|ADV35682.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
          Length = 712

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 45/163 (27%), Gaps = 34/163 (20%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DG + G++   GA  TGR +        +P  +                          
Sbjct: 393 EDGFIHGSINPNGAV-TGRATHSYPNMGQVPSAKAP----------------FGPECRSL 435

Query: 361 SDCVRSCIIASNGKKLVV-ADLAGIEARVLAWI-AGEDWK--IKAFANGEDIY--VTTYA 414
              + +  I      +    D +G+E R L    A  D    +    NG D++      A
Sbjct: 436 FGAIYARHIPGWENVVQAGVDASGLELRCLGHFGAKYDGGGYVDQVLNG-DVHWANAVAA 494

Query: 415 KAFNTPIDKV-SKEQ------RAIGKVMELALGYQGGAKVFKT 450
                  D V  KE       R   K    A  Y  G     +
Sbjct: 495 ---GIAKDAVRDKENHQHDRWRDNAKTFIYAFLYGAGDAKIGS 534


>gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
 gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
          Length = 110

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           +R +G ++  N  +Q  + D++   M    +          IVL +HDE++ ET  +   
Sbjct: 17  QRQFGERVAMNSPIQGTAADVMKIAMIRVDRELKKRNMKSRIVLQIHDELLVETERSEVE 76

Query: 643 SVGT-LCSLM 651
           +V   L   M
Sbjct: 77  AVKALLEEQM 86


>gi|294658573|ref|XP_460911.2| DEHA2F12628p [Debaryomyces hansenii CBS767]
 gi|202953230|emb|CAG89264.2| DEHA2F12628p [Debaryomyces hansenii]
          Length = 1342

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 23/125 (18%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-----------WKIKAFANGE--D 407
              +++ I A  G   V AD+   E  + A + G+            W        E  D
Sbjct: 712 GSELKAMIEAPEGYTFVGADVDSEELWI-ASLVGDSMFEMHGSTALGWMTLEGDKSEKTD 770

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T  +             R   KV      Y  G K    +   C   L      + 
Sbjct: 771 LHSKTA-EILGIS--------RNDAKVFNYGRIYGAGVKFATRLLKQCNSSLSDVEAELM 821

Query: 468 STSTF 472
           + + +
Sbjct: 822 AKTLY 826


>gi|196233306|ref|ZP_03132151.1| putative ATPase [Chthoniobacter flavus Ellin428]
 gi|196222611|gb|EDY17136.1| putative ATPase [Chthoniobacter flavus Ellin428]
          Length = 385

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 70/206 (33%), Gaps = 23/206 (11%)

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDS------------PPYDCTRANHVQAWQLFGEYCK 164
             S HL + E  KAL  RF      +              +   RA H+    L  +   
Sbjct: 159 GASNHLPEDEALKALFDRFLLRVRSNNVAPEQLIAVLDAGWKQQRAEHLPPATLHFD--- 215

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            DVEA ++L   L+ L+        L Q I   G  +     +KLQ LIA          
Sbjct: 216 -DVEALQKLL-PLVDLTAVRGPYAELVQRIRHAGIVLSDRRAVKLQRLIAASALLCTRMA 273

Query: 225 VKLTD-----GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L+D      I  +  Q   L+  +    G +     +         ++   LA+DL  
Sbjct: 274 ARLSDLWVLKHIWDTEEQCEVLQSLVNTALGQEAAAGGDHPRSRAGEEADAEHLARDLEA 333

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGR 304
                  +   +L  L + +   DGR
Sbjct: 334 IAAQLPKADATELAYLRDRLGILDGR 359


>gi|170053309|ref|XP_001862614.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167873869|gb|EDS37252.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 1150

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 33/125 (26%), Gaps = 22/125 (17%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDW--------KIKAFANGED 407
              +R+ + A  G KLV AD+   E  + +       A                 A   D
Sbjct: 776 GSELRAMVQAPRGFKLVGADVDSQELWIASVLGDGHAAAIHGATPLGWMTLSGTKAAKTD 835

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T                R   KV+  A  Y  G    + +               K
Sbjct: 836 MHSVTAQAV-GIS--------RDHAKVINYARIYGAGQNFAERLLKQFNPTFSDAEARSK 886

Query: 468 STSTF 472
           +   F
Sbjct: 887 AIKMF 891


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVL 99
           + D+ + + +    + ++ D  ++  AHN+ F+R      L           RW+ T  L
Sbjct: 64  VADKPKFADLAQAFIDFVGDAPII--AHNASFDRGFINMELERLGLDPTDPDRWVDTLEL 121

Query: 100 ARTN--GLPSSLKNACLALNFS 119
           AR    G+ +SL   C   N S
Sbjct: 122 ARYKFPGMANSLDALCKRYNIS 143


>gi|145482069|ref|XP_001427057.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394136|emb|CAK59659.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3657

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 39/302 (12%)

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
             V          L+     L  S+ + + E        F K +    PY+     +   
Sbjct: 455 DEVWKAYYAYLMYLEEKITHLR-SQSVIQDE----FAQFFNKNTKSKKPYEIYMEKNPDK 509

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI-DLDLVLKLQELIA 214
            Q   +   +D++   ++ K              ++Q I+  G  I  +++   + ++I 
Sbjct: 510 LQFQDQINSQDIQILEQIQK-----------ESEIEQQIDLNGRNIQLIEVFHGIFQIIQ 558

Query: 215 QERKKLD--EDIVKLTDGIIR---SSRQTYALRMYLFLITGIDL--VDMSEGTLKSILSH 267
           + RK+    + I  + +       SS+    L+      + +DL    +    L SI   
Sbjct: 559 EHRKQQKYYDQIKGICNINSNKFISSKDVKVLKKEQLAKSYLDLFQDALYITNLGSIKQL 618

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS----GC 323
             I  LA+        +      KL    +      +L    + Y  + TG+ S      
Sbjct: 619 KTIWDLAEIAPFEPFITYKITSDKLAKSQQC-----KLNAIWKQYCVTETGKISLFSNME 673

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
             +  NL   E+    +  + + ++    + D   +     R   +      +  +D   
Sbjct: 674 RIKINNLALDEKINFTILISDKFVSAKYCLHDNYEIQGKSKRKFFVP-----IFKSDY-N 727

Query: 384 IE 385
           IE
Sbjct: 728 IE 729


>gi|268316024|ref|YP_003289743.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333558|gb|ACY47355.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 681

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 47/381 (12%), Positives = 107/381 (28%), Gaps = 51/381 (13%)

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG-TLQFYGASRTGR 319
           +  ++      +    L   R  ++   + +   L +      R++G T   +      R
Sbjct: 59  VAYLVETGTPPEEIVLLTFTR-RAAREMLARAAALLDGRCE--RVQGGTFHAFCLGLLRR 115

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
           ++G +  P N    + S+      +     G   +         +++   A+       A
Sbjct: 116 YAGRLGYPSNFTVLDASDAADVIDLLRTAHGLHRSGRRFPRKQTIQAIFSAAASHP--DA 173

Query: 380 DLAGI-EAR---VLAWIAGEDWK-----------------------IKAFANGEDIYVTT 412
           DL  I EAR    L  +                             I+ F    D++   
Sbjct: 174 DLETILEARYPQFLEHLEALQALREDYACYKRQHGLMDYDDLLACTIELFRQHPDVHRQV 233

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+  +  +D+     R   ++++      G        A           +N+      
Sbjct: 234 AARCRHVLVDEYQDTNRLQAQIVQALAAVHGNVMAVGDDAQSIYRFRGADFRNIFEFPRL 293

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
               +        +   P   + +++I           R  H    ++     +      
Sbjct: 294 FPGTRILKLEQNYRSTQPILDLANRII-----------RRAHHRYDKVLFSERKQGERPA 342

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                        V ++++   ++ V +   +       +       LN      ++   
Sbjct: 343 IVPAPDERTESRFVCQMILALREQGVPLHQMAVLFRSSHNAFDLEMELNRRGIPYVK--- 399

Query: 593 YGG-KLTENIVQAISRDILCE 612
           YGG KL+E    A  +D+L  
Sbjct: 400 YGGLKLSE---AAHVKDLLAY 417


>gi|193786930|dbj|BAG52253.1| unnamed protein product [Homo sapiens]
          Length = 626

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 92/307 (29%), Gaps = 26/307 (8%)

Query: 84  LGIDIPSKRWIC---TSVLARTNGLP----SSLKNACLALNFSEHLTKMEEGKALIARFC 136
           +G       W C   T++ A    +     S +              +++E   L  + C
Sbjct: 50  VGRWARPCIWPCPWHTTINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKC 109

Query: 137 KGS-------IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
           + +         S          ++  +      ++D    + +   L+ L   ER+L  
Sbjct: 110 QEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQ 169

Query: 190 LDQTIND-RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY--LF 246
           L +     R  R    L+ +  E + ++  + ++    L    + + R    L+ +  L 
Sbjct: 170 LREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLD 229

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRL 305
              G+ +           LS   +    ++L L    S+ ++  +   L +A       L
Sbjct: 230 QTMGLSIR------TPEDLSRFVVELQQRELALKDKNSAVTSSAR--GLEKARQQLQEEL 281

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R         R  R +      +   R     +        L   ++   P   +    R
Sbjct: 282 RQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPAEYSPQLTR 341

Query: 366 SCIIASN 372
               A +
Sbjct: 342 RMREAED 348


>gi|169842239|ref|ZP_02875344.1| hypothetical protein cdivTM_34052 [candidate division TM7
           single-cell isolate TM7a]
          Length = 38

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
           +  E R+ A +AG++  I  F N  DI+  
Sbjct: 5   SQFELRLAAIMAGDEDLINDFNNDIDIHTL 34


>gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E]
 gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii]
 gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 203

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 25/161 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  ++  +    L     Q     +L   L D+T   + H + F+    KK L ID+  +
Sbjct: 38  LLQFSNGNGEAHLVHFINQDYTAPNLKMLLLDKTRCKIFHFARFDLASIKKYLSIDL--E 95

Query: 92  RWICT---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
              CT   S L RT      LK+ C  L  + +++K ++                     
Sbjct: 96  NIFCTKISSKLVRTYTDSHGLKDLCREL-LNINISKQQQSSYW----------------- 137

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
             +H+   Q   EY  +DV    +L   L  +   E  L L
Sbjct: 138 GTDHLSLEQ--KEYAAKDVLYLHQLKDILQKMLLRENRLEL 176


>gi|215509404|gb|EEC18857.1| DNA polymerase gamma, putative [Ixodes scapularis]
          Length = 1055

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 36/127 (28%), Gaps = 24/127 (18%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAG------EDWKIKAFAN-- 404
                 ++S + A  G  +V AD+   E  +      A  A         W         
Sbjct: 719 DRVGSELKSMVQAPKGYHIVGADVDSQELWIASILADAHFAEMHGCTAIGWMTLQGNKAV 778

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--AKVFKTMASHCGLDLQQF 462
           G D++  T                R   KV+  A  Y  G        M  +  LD Q+ 
Sbjct: 779 GTDMHSRTATSV-GIS--------RDQAKVINYARIYGAGQPFAQRLLMQFNHRLDAQEA 829

Query: 463 SQNVKST 469
           S   K  
Sbjct: 830 STKAKKM 836


>gi|47934808|gb|AAT39842.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 253

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 28/109 (25%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           + G++   GA  TGR +        +P                                 
Sbjct: 170 IHGSVNPNGAV-TGRATHSYPNVAQVP-----------------------GSQSEYGKEC 205

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAG--EDWK-IKAFANGEDIYV 410
           R       G  L+ +D +G+E R L       +    IK    G DI+ 
Sbjct: 206 RQLFTVPPGWVLMGSDASGLELRCLGHFMARYDKGAYIKEILEG-DIHT 253


>gi|300087681|ref|YP_003758203.1| hypothetical protein Dehly_0570 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527414|gb|ADJ25882.1| conserved hypothetical protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 23/139 (16%)

Query: 5   FIDIETR--SP--QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           ++DIET   SP    +  +G+          L      +E V+L   D T     P +LL
Sbjct: 25  YLDIETTGLSPQCCDITVIGIH---------LFKPPDREEFVQLVGDDIT-----PKNLL 70

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW--ICTSVLARTNGLPSSLKNACLAL 116
             +     +   + + F+    +  LG+D+ +                L   LK     L
Sbjct: 71  AAMEGIGRLFTFNGARFDLPWIRHHLGLDLSAGGIEHYDLMYYCHRRHLFGGLKKIEPLL 130

Query: 117 NFSEHLTKMEEGKALIARF 135
                L +M  G   +  +
Sbjct: 131 GIPRSLPEMN-GYQAVKLW 148


>gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 161

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 37/164 (22%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEH 121
           D     V  N  ++  +  +  GI++    +  T + +      +S      LA  +  +
Sbjct: 1   DPEQKKVGQNLKYDMSVLARY-GIELRGIAF-DTMLESYVLDSTASRHDMDSLAKKYLHY 58

Query: 122 LT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            T   +   GK      F +  ++S                   Y   D + T  L + L
Sbjct: 59  DTIHFEDVAGKGKKQLTFDQIPLESAA----------------PYAAEDADITLRLHQTL 102

Query: 178 IP-----------LSDGERDLWLLDQTIND---RGYRIDLDLVL 207
            P            +D E  L  +   I        + D +   
Sbjct: 103 WPRLQAEPTLASLTTDLEVPLVPVLSRIERNRGAHRQCDAEGAE 146


>gi|312382389|gb|EFR27865.1| hypothetical protein AND_04938 [Anopheles darlingi]
          Length = 701

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 67/186 (36%), Gaps = 33/186 (17%)

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D++ +LK +  + + +K+L++   +L    +                  ++       TL
Sbjct: 485 DVEGLLKAEVALKEMQKELEQ--ARLEQENVGK------------EKMDLERRLREAPTL 530

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            S  S   + QL +++ + R   S + +   +                   G     + +
Sbjct: 531 TSSSSDLELQQLKQEIEMLRSELSRAEVEIND------------HCWTPPQGLQSWLQLT 578

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
             +    ++ ++  +E+ L Q  +A  + +     L           ++++GK +   D 
Sbjct: 579 YELEHKHHIRKRVMAEKQLEQAREACEKLKKKRSSLV-------GAFVSTHGKSIDDVDR 631

Query: 382 AGIEAR 387
           + +EAR
Sbjct: 632 SIVEAR 637


>gi|320540777|ref|ZP_08040357.1| hypothetical protein SSYM_0069 [Serratia symbiotica str. Tucson]
 gi|320029160|gb|EFW11259.1| hypothetical protein SSYM_0069 [Serratia symbiotica str. Tucson]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           AHN+  +R +    +     +   + T V +  +GLP SL + C  LN ++
Sbjct: 1   AHNNHLDRTISNHAM--PGVAAGDVDTMVRSLAHGLPGSLGDLCDILNVAQ 49


>gi|15790277|ref|NP_280101.1| hypothetical protein VNG1213C [Halobacterium sp. NRC-1]
 gi|10580745|gb|AAG19581.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 326

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 26/173 (15%)

Query: 5   FIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           F DIET      S   +  V V                             S + ++ LQ
Sbjct: 164 FFDIETTGLDQHSSV-VTTVSVHR---------------GGDTTT--LVRGSDLTAERLQ 205

Query: 60  YLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            L D   M  + N   F+    +    + + S   +      R   L   LK     L  
Sbjct: 206 ALLDA-PMVASFNGKRFDAPFLEHHFDLSLDSPH-LDLMYPCRRLDLTGGLKQVERDLGV 263

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                   +G+  +  + + + D+      R      +         D  A R
Sbjct: 264 DRAEVDDVDGREAVRLWRRYAEDNDEAALDRLVTYNQYDTQNLQAILDAVAER 316


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWQKIKDYFNNNLVI--AHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIET-----RSPQPLP----KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS 51
           M  + ID ET      SP  +     + G     E   I      +       W+     
Sbjct: 1   MPVVAIDFETANEQRSSPCAIGLAWIENGRITEVEHHYIRPIDMRFSG-----WNIAVHG 55

Query: 52  AMPSDLLQYLRDETVM-----------CVAHNSLFERILFKKT---LGIDIPSKRWICTS 97
             P+D+        V+            +AHN+ F+  + ++T    G+  P   +ICT 
Sbjct: 56  IRPADVEDADAFPDVLGRLQARIERATVIAHNAAFDISVMRRTCELYGLPFPCFDYICTV 115

Query: 98  VLARTN--GLPSS-LKNACLALNFS 119
            +A+    GLPS+ L   C  L   
Sbjct: 116 QVAKNTWPGLPSAKLNAVCDFLGVE 140


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 103/311 (33%), Gaps = 76/311 (24%)

Query: 5   FIDIET--RSPQPLPKVGV------------------WAYAEQAVITLCAYAWDDEPVKL 44
           F+D+ET       +  +GV                   A+ ++  I L        P  +
Sbjct: 7   FVDVETPNYQNNSISSIGVINVDGDGVVTTKYFLVDPEAHFDRFNIELTGIT----PEMV 62

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVLAR 101
            D+     + S++  Y  +   + VAHN++F+  +    L    + I    + CT  ++R
Sbjct: 63  ADQPNFKEVWSEIEPYFTNS--LVVAHNAVFDLSVISACLQRYDLPIFPIFYTCTYRISR 120

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                        AL    +  K+ +  +              Y  T  NH         
Sbjct: 121 -------------ALKIPSNSYKLNDLSSY-------------YHVTLDNH--------H 146

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
               D +A  E+F  L+     E +L  LDQ +       +     K  +   +  + L 
Sbjct: 147 NALADSKACMEIFYYLL----KEPNLETLDQYVK----CFEPT---KGNKDNKKYLEVLI 195

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
             +  +      + ++   L  +L       +  ++ +  LK++L +  IT      ILN
Sbjct: 196 GLLTGIGFDNYLNKKEISFLNNWLTKNQLPYEYANIVKE-LKAVLKNEYITHYQYLHILN 254

Query: 281 RLASSGSAILK 291
            L    S   K
Sbjct: 255 ELQYMKSIKAK 265


>gi|15528437|emb|CAC69254.1| transposase [Acidithiobacillus ferrooxidans]
          Length = 987

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
              LSE +  DG  R           G+ +   +  Q+  +      +  + I+ L   +
Sbjct: 178 YEALSEPL-PDGHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHML--EHIERLKTWQ 234

Query: 352 TIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGE 406
            +  P+G+       R   IA  G ++  ADLA  E   R    ++   +          
Sbjct: 235 ALDMPVGIERSVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVSLAIEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  ++ +A GK +   +   G        A   G D     ++V
Sbjct: 295 DLHDRILGKLFNVAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDPFAAIESV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWDAF 360


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICT 96
             K+ D  +   +  DL+++L D  ++  AHN+ F+R      +G       P  RWI T
Sbjct: 62  DDKVKDAPKFHEVVDDLMEFLGDAPLI--AHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119

Query: 97  SVLARTN--GLPSSLKNACLALNFS 119
             LA+    G+ +SL   C     S
Sbjct: 120 LALAQKRFPGMANSLDALCKRYKIS 144


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 54  PSDLLQYLR-DETVMCVAHNSLFERILFKKTL---GIDIPSK-RWICT--SVLARTNGLP 106
           P  +  +L      + VAHN+ F+R      L   G DI  + RW+ T      R  G P
Sbjct: 77  PDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDTVQMARKRYPGAP 136

Query: 107 SSLKNACLALNFS 119
           +SL   C   + S
Sbjct: 137 ASLDALCKRFDIS 149


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 22/105 (20%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFKKTL-- 84
           D  PV +   T     P  L      + V           + VAHN+ F+          
Sbjct: 60  DPGPVHIHGLT-----PERLRGAPTFDRVAERVAELLSGRVMVAHNAAFDYAFLAHEFGR 114

Query: 85  -GIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKM 125
            G+ +P ++ +CT  L R  GLP+    L          +H    
Sbjct: 115 AGLHLPVEQRLCTLALGRRIGLPTPDLRLSTLAAHYGVPQHRAHD 159


>gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 203

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 58/166 (34%), Gaps = 26/166 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  ++  +    L     Q     +L   L D+T   + H + F+    KK L ID+  +
Sbjct: 38  LLQFSNGNGEAHLVHFVNQDYSAPNLKALLLDKTRCKIFHFARFDLAAIKKYLSIDL--E 95

Query: 92  RWICT---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
              CT   S L RT      LK+ C  L  S +++K ++                    T
Sbjct: 96  NIFCTKISSKLVRTYTDSHGLKDLCREL-LSINISKQQQSSYW---------------GT 139

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                +      EY  +DV    +L   L  +   E  L  L Q I
Sbjct: 140 DNLSSEQ----KEYAAKDVLYLHQLKDILQKMLLRENRL-ELAQDI 180


>gi|228969099|ref|ZP_04130013.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228790588|gb|EEM38275.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 134

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               E R LA +  E   I+AF  G D++     +   
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSQITCQIKG 43


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 331

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 22/140 (15%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRT----EQSAM 53
           +D+ET        +    V+        E    TL     D  PV +   T    E + +
Sbjct: 22  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 81

Query: 54  PSDLLQYLR---DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS 107
             ++ + L    D  V+ VAHN++F+  +  +     GI  P +R +CT  LA+   LP 
Sbjct: 82  FPEIAEELSRRLDGRVL-VAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALPL 140

Query: 108 S---LKNACLALNFSEHLTK 124
               L+         +    
Sbjct: 141 PNHKLETLAAHFGVEQRRAH 160


>gi|228907508|ref|ZP_04071365.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228852000|gb|EEM96797.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 134

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               E R LA +  E   I+AF  G D++     +   
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSQITCQIKG 43


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 22/140 (15%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRT----EQSAM 53
           +D+ET        +    V+        E    TL     D  PV +   T    E + +
Sbjct: 24  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 83

Query: 54  PSDLLQYLR---DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS 107
             ++ + L    D  V+ VAHN++F+  +  +     GI  P +R +CT  LA+   LP 
Sbjct: 84  FPEIAEELSRRLDGRVL-VAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALPL 142

Query: 108 S---LKNACLALNFSEHLTK 124
               L+         +    
Sbjct: 143 PNHKLETLAAHFGVEQRRAH 162


>gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
 gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 27/143 (18%)

Query: 1   MSKLFIDIETRSPQPLPKV---------GVWAYAEQAVITL----CAYAWDDE-----PV 42
           M  + ID ET S Q              G  A  E   I       A A++       P 
Sbjct: 8   MKVIAIDFETASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFA-AFNMAFHGIRPE 66

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVL 99
            + D  E   +   +   L    V+  AHN+ F+  + ++      +  P   ++CT  +
Sbjct: 67  HVADADEWPDVLERIRPELEGALVL--AHNASFDISVIRRTCEHYDVPAPGFDYLCTVQV 124

Query: 100 ARTN--GLPSS-LKNACLALNFS 119
           AR+    LPS  L   C  L   
Sbjct: 125 ARSVWPELPSHKLNVVCGHLGVD 147


>gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15]
 gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 27/143 (18%)

Query: 1   MSKLFIDIETRSPQPLPKV---------GVWAYAEQAVITL----CAYAWDDE-----PV 42
           M  + ID ET S Q              G  A  E   I       A A++       P 
Sbjct: 1   MKVIAIDFETASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFA-AFNMAFHGIRPE 59

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVL 99
            + D  E   +   +   L    V+  AHN+ F+  + ++      +  P   ++CT  +
Sbjct: 60  HVADADEWPDVLERIRPELEGALVL--AHNASFDISVIRRTCEHYDVPAPGFDYLCTVQV 117

Query: 100 ARTN--GLPSS-LKNACLALNFS 119
           AR+    LPS  L   C  L   
Sbjct: 118 ARSVWPELPSHKLNVVCGHLGVD 140


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 56  DLLQYLRD--ETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLA--RTNGLPS 107
           ++++   D       VAHN+ F+R      LG+    ++P  RWI T  LA  R  G+ +
Sbjct: 75  EIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDTLALAKQRFPGMHN 134

Query: 108 SLKNACLALNFS 119
           SL   C     S
Sbjct: 135 SLDALCKRFKIS 146


>gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
 gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            ID ET        +G+  + ++  +     +  D    +    +  +   +L + L D 
Sbjct: 21  AIDTET--------MGLHPHRDRLCVVQL--SNGDGSADVVQIPQGHSDAPNLKKLLGDP 70

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEH 121
            ++ + H + F+       LG+    +   CT + +R     +    LK+    L  +  
Sbjct: 71  NILKIFHFARFDLAALSNALGV--MPQPVYCTKIASRLTRTYTDRHGLKDLVREL-LNVD 127

Query: 122 LTKMEEGKAL 131
           L+K ++    
Sbjct: 128 LSKQQQSSDW 137


>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
 gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
          Length = 241

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICT 96
             K+ D  +   +  DL++++ D  ++  AHN+ F+R       K          RWI T
Sbjct: 62  DDKVKDAPKFHEIADDLIEFIGDAPMI--AHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119

Query: 97  SVLARTN--GLPSSLKNACLALNFS 119
             LA+    G+P+SL   C     S
Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVS 144


>gi|281306681|ref|YP_003345487.1| hypothetical protein SBWP25_0022 [Pseudomonas phage phi-2]
 gi|271277986|emb|CBH51592.1| hypothetical phage protein [Pseudomonas phage phi-2]
          Length = 331

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 69/205 (33%), Gaps = 44/205 (21%)

Query: 2   SKLFIDIETRSPQPL---------PKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQS 51
             L IDIET    P+           VG+    E+  I      W  EP  ++ D  E  
Sbjct: 76  RILLIDIET---APILGYVWSLWKQNVGLNQIKEEWYILSYCAKWLGEPEVIYEDIRENP 132

Query: 52  AMPSDLLQYL---RDETVMCVAHNSL-FE------RILFKKTLGIDIPSKRWICTSVLAR 101
                LL  L    DE  + +  N   F+      R++    L       + I T ++A+
Sbjct: 133 FCDKPLLAGLWKLMDEADIIIGQNGKAFDMPKIQARLVMNGYLPPR--PYKVIDTMLMAK 190

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALI-ARFCKGSIDSPP-----YDCTRANHVQA 155
                           F+ +  +   G++       K      P      +C + N  +A
Sbjct: 191 ------------QQFRFTSNKLEWMTGESANLTTLTKSKHSKFPGFLLWAECLKKN-PEA 237

Query: 156 WQLFGEYCKRDVEATRELFKRLIPL 180
           W    EY   DV +  EL+ +L P 
Sbjct: 238 WDEMKEYNIPDVTSMEELYLKLRPW 262


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 22/137 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSDL 57
             L I + T +P    + G +               D  PV +   T      +     +
Sbjct: 35  RVLSIAVLTFAP-DGTQTGEYTTLLDP-------GCDPGPVHVHGLTAERLRGAPAFEQV 86

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP---SS 108
              +  L D  VM VAHN+ F+            + +P  R +CT  L R    P    S
Sbjct: 87  ADRIGALLDGRVM-VAHNAQFDYDFLAHEFARARLHLPVARRLCTLALNRRVEPPVAGLS 145

Query: 109 LKNACLALNFSEHLTKM 125
           L +        +     
Sbjct: 146 LASLAAYYGVPQTRAHD 162


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +   +  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKHYFNNN--LVTAHNASFDISVLRNTLKLYNIKMPSFDYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L D   + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIDGADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|169236009|ref|YP_001689209.1| hypothetical protein OE2740F [Halobacterium salinarum R1]
 gi|167727075|emb|CAP13860.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 250

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 24/172 (13%)

Query: 5   FIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           F DIET      S   +  V V                             S + ++ LQ
Sbjct: 88  FFDIETTGLDQHSSV-VTTVSVHR---------------GGDTTT--LVRGSDLTAERLQ 129

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D  ++   +   F+    +    + + S   +      R   L   LK     L   
Sbjct: 130 ALLDAPMVASFNGKRFDAPFLEHHFDLSLDSPH-LDLMYPCRRLDLTGGLKQVERDLGVD 188

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                  +G+  +  + + + D+      R      +         D  A R
Sbjct: 189 RAEVDDVDGREAVRLWRRYAEDNDEAALDRLVTYNQYDTQNLQAILDAVAER 240


>gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           TIE-1]
 gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas
           palustris TIE-1]
          Length = 276

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 21/111 (18%)

Query: 6   IDIETR----SPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLW----------D 46
           +DIET     S   + ++G+  +   A   +        A+++  V +           D
Sbjct: 25  LDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAFNEPSVPIPREITAITGITD 84

Query: 47  -RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                       +    D+ V+ +AHNS F+R   ++   +      W C+
Sbjct: 85  GMVAGHGFDVHAVAAFVDDAVIVIAHNSGFDRKFAERYWPVFEHRA-WACS 134


>gi|148807575|gb|ABR13588.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 34/184 (18%)

Query: 203 LDLVLKLQELI-----AQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             +  +LQ++       +  +K  + +  K+T+  + S +Q       + +   +     
Sbjct: 14  RQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQTEKG 73

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           +    + +L   +I +         L    + I    T  +    DGR+ G +   GA  
Sbjct: 74  AIIVNEKVLEGIDIPEAKMIYEYLMLQKRAAQIDSWLTHEK----DGRVHGRVITNGAV- 128

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +        +P                                 RS      G KL
Sbjct: 129 TGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPEGHKL 165

Query: 377 VVAD 380
           +  D
Sbjct: 166 IGCD 169


>gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
 gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +    +      +L + L D  V+ + H + F+    +   G+        C
Sbjct: 42  SSGDGDAHMVQIAQGQTEAPNLTRMLTDPKVLKLFHYARFDVAALENAFGVRTAP--IYC 99

Query: 96  TSVLAR-------TNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           T + ++        +GL + L            ++K ++    
Sbjct: 100 TKIASKLVRTYTDRHGLKALLSEV-----LGVDVSKAQQSSDW 137


>gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 14/145 (9%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +++D    L         P+ L + L D+ +  + H + F+  +    L          C
Sbjct: 44  SFNDGNAHLVQFKNDYTAPN-LRKILEDKNITKIFHFARFDVSIIHYYLQTWALPC--YC 100

Query: 96  TSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T + +R     +   SLK  CL L     L K ++              S         H
Sbjct: 101 TKIASRLVRTYTDNHSLKELCLEL-LDIKLNKQQQSSDWGNENLTDKQKSYAASDVLYLH 159

Query: 153 VQAWQLFGEYCKRDVEATRELFKRL 177
               +L       D+   RE  K L
Sbjct: 160 KIKEKL-------DLMLERENRKEL 177


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWEKIKGYFNNNLVI--AHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT--- 96
             V L   +     P+ L+  L D  ++ + H + F+  + +  LG+        CT   
Sbjct: 58  GNVHLVKFSGNYQAPN-LVSVLSDPNIIKIFHFARFDIAVMRYYLGMWANPC--YCTKIA 114

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           S L RT      LK  C  L     L KM++              +  
Sbjct: 115 SKLVRTYTDHHGLKELCYEL-LGVKLNKMQQSSDWGRESLTSEQLNYA 161


>gi|62243332|ref|NP_003541.2| mitotic spindle assembly checkpoint protein MAD1 [Homo sapiens]
 gi|62243369|ref|NP_001013858.1| mitotic spindle assembly checkpoint protein MAD1 [Homo sapiens]
 gi|62243374|ref|NP_001013859.1| mitotic spindle assembly checkpoint protein MAD1 [Homo sapiens]
 gi|52783153|sp|Q9Y6D9|MD1L1_HUMAN RecName: Full=Mitotic spindle assembly checkpoint protein MAD1;
           AltName: Full=Mitotic arrest deficient 1-like protein 1;
           Short=MAD1-like protein 1; AltName: Full=Mitotic
           checkpoint MAD1 protein homolog; Short=HsMAD1;
           Short=hMAD1; AltName: Full=Tax-binding protein 181
 gi|4416457|gb|AAD20359.1| mitotic checkpoint protein [Homo sapiens]
 gi|14602944|gb|AAH09964.1| MAD1 mitotic arrest deficient-like 1 (yeast) [Homo sapiens]
 gi|190689435|gb|ACE86492.1| MAD1 mitotic arrest deficient-like 1 (yeast) protein [synthetic
           construct]
 gi|190690797|gb|ACE87173.1| MAD1 mitotic arrest deficient-like 1 (yeast) protein [synthetic
           construct]
          Length = 718

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 82/275 (29%), Gaps = 19/275 (6%)

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGS-------IDSPPYDCTRANHVQAWQLFGE 161
           +              +++E   L  + C+ +         S          ++  +    
Sbjct: 174 MDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLS 233

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKL 220
             ++D    + +   L+ L   ER+L  L +     R  R    L+ +  E + ++  + 
Sbjct: 234 LQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQ 293

Query: 221 DEDIVKLTDGIIRSSRQTYALRMY--LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           ++    L    + + R    L+ +  L    G+ +           LS   +    ++L 
Sbjct: 294 EKMQETLVGLELENERLLAKLQSWERLDQTMGLSIR------TPEDLSRFVVELQQRELA 347

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L    S+ ++  +   L +A       LR         R  R +      +   R     
Sbjct: 348 LKDKNSAVTSSAR--GLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLT 405

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           +        L   ++   P   +    R    A +
Sbjct: 406 KERDGMRAILGSYDSELTPAEYSPQLTRRMREAED 440


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +      +P + L  L  E  + +AHN+ F+R   ++   I   +K W C+
Sbjct: 157 EMVRGQTIPREKLDALIAEADIIIAHNAGFDRPFLER-FSIAFANKPWACS 206


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 18/108 (16%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVITLCAYAWDD--EPVKLW---------DRT 48
           +D ET    P    + ++G   + YA+   I      +    +P K           +  
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITGITDEMV 135

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 KGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 182


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTN--GL 105
            +    L+++ D  V+  AHN+ F+R       +K     +P  RW+ T  +A+    G+
Sbjct: 73  EIADAFLEFVGDSPVI--AHNAAFDRSFVNFELEKCNRGPLPESRWVDTLAMAKKRFPGM 130

Query: 106 PSSLKNACLALNFSEH 121
            +SL   C     S  
Sbjct: 131 YNSLDALCKRFKISLD 146


>gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
 gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
          Length = 327

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 22/115 (19%)

Query: 5   FIDIET---RSPQP-LPKVGVWAYAEQA--------VITLCAYAWDDEPV---------K 43
           F+D ET    S    + ++G+                  + AY    +P+          
Sbjct: 80  FLDTETTGLSSDMDVIIELGLVKALFSPTAHRLVSIERIVSAYEDPGKPITPFITELTGI 139

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
             D      +   ++    D+ V+ VAHN+ F+R  F+K        K+W C+ V
Sbjct: 140 TDDMVRGKRIDETMVAGFLDDAVLIVAHNAAFDRPFFEKRF-RGFEEKKWACSLV 193


>gi|119607626|gb|EAW87220.1| MAD1 mitotic arrest deficient-like 1 (yeast), isoform CRA_b [Homo
           sapiens]
          Length = 695

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 82/275 (29%), Gaps = 19/275 (6%)

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGS-------IDSPPYDCTRANHVQAWQLFGE 161
           +              +++E   L  + C+ +         S          ++  +    
Sbjct: 174 MDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLS 233

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKL 220
             ++D    + +   L+ L   ER+L  L +     R  R    L+ +  E + ++  + 
Sbjct: 234 LQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQ 293

Query: 221 DEDIVKLTDGIIRSSRQTYALRMY--LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           ++    L    + + R    L+ +  L    G+ +           LS   +    ++L 
Sbjct: 294 EKMQETLVGLELENERLLAKLQSWERLDQTMGLSIR------TPEDLSRFVVELQQRELA 347

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L    S+ ++  +   L +A       LR         R  R +      +   R     
Sbjct: 348 LKDKNSAVTSSAR--GLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLT 405

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           +        L   ++   P   +    R    A +
Sbjct: 406 KERDGMRAILGSYDSELTPAEYSPQLTRRMREAED 440


>gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476]
 gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 206

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +    +      +L++ L D  V  + H   F+  +   T G+    +   CT 
Sbjct: 46  GDGTADIIQIAKGQKNAPNLVKLLEDNAVTKIFHFGRFDLAILAHTFGV--MPEAVFCTK 103

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
             S L RT      LK  C  L  + +++K ++    
Sbjct: 104 IASKLTRTYTDRHGLKEICNEL-LNVNISKQQQSSDW 139


>gi|229073435|ref|ZP_04206571.1| DNA polymerase I [Bacillus cereus F65185]
 gi|228709742|gb|EEL61780.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 134

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               E R LA +  E   I+AF  G D++     +   
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSHITCQIKG 43


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + K TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKDYFNNNLVI--AHNASFDMSVLKSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
 gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002]
 gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
          Length = 207

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 16/131 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  Y ++  +       D   V      +      +L   +  
Sbjct: 25  IAIDTET--------MGLNPYRDRLCLVQLCD--DAGYVSAIRIAQGQTAAPNLKALMEA 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNF-SE 120
             +  V H + F+    +   GI+     + CT  +A   G    SS     L       
Sbjct: 75  PEITKVFHFARFDLAQLRHVFGIETRP--FFCT-KIASKLGRTYTSSHGLKALVKELMGV 131

Query: 121 HLTKMEEGKAL 131
            L K  +    
Sbjct: 132 ELDKSAQSSDW 142


>gi|47208533|emb|CAF91230.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2146

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 29/219 (13%)

Query: 96   TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRA- 150
            +   A+  GL  SL +A +++  +   T  +  K L+ R C+        S P   T   
Sbjct: 1800 SMAWAQLYGLNKSLDDAAVSITPTLRQTHAQTHKLLLLRRCQIDPFSHDSSEPSRATTVP 1859

Query: 151  -----NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                   ++ W+L  +     +E      KR   L     D+ L+          ID D 
Sbjct: 1860 WMTAEIELKPWRLTSKIL---MEKLMSCRKRFFLL-----DIVLMANQSKLNITEIDPD- 1910

Query: 206  VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                     +   K+ E    LT+   RSS     +         ++L+D     L +  
Sbjct: 1911 -------DRERESKIKEAEAMLTEMRNRSSSSQKKMVD-REKKEAVELLDRINKHLAARQ 1962

Query: 266  SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
              ++       + LNRL S    +   + L++A+++  R
Sbjct: 1963 QETDDAAAVIRIRLNRLHSEMMDLR--DALNDAINNTAR 1999


>gi|258591967|emb|CBE68272.1| Exonuclease-like protein [NC10 bacterium 'Dutch sediment']
          Length = 162

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M   ++DIET     +  VG++A  ++ +I L      D  V +W             Q 
Sbjct: 1   MKA-YLDIETSFDGAITVVGLYA-PDRGLIQLIGTQISD--VTVW-------------QA 43

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L     +C  + S F+  + ++ LG+D+  +             GL   LK     L+  
Sbjct: 44  LDGVETICTYNGSRFDLPVIRRRLGLDLCATIESHDLMYTCWRYGLFGGLKRVEAQLSIP 103

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
              +K  +G   +  + +                +A Q+   Y + DV
Sbjct: 104 R-RSKGIDGMEAMRLWSRYE---------DGGDEEALQMLLTYNREDV 141


>gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
 gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
          Length = 195

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 37/130 (28%)

Query: 1   MSKLFIDIE------------TRSPQPLPKVGVWA------------YAEQAVITLCAYA 36
           M K+FID E            T     +   G               Y E++   +  ++
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINSKGEERVSFSKNFFFDVDYIEESAEAIHGFS 60

Query: 37  WDDEPVKLWDRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFKKTLG----IDIP 89
            +    KL   +          ++   L+D   + +AHN  F+R            I+  
Sbjct: 61  VE----KLKILSNGKKFKDLASEISSDLKDG--IFIAHNVNFDRKFVTAEFNRLDDINWI 114

Query: 90  SKRWICTSVL 99
            K + CT   
Sbjct: 115 PKEFFCTMEY 124


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 43  KLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFER----ILFKKTLGIDIPSKRWICT 96
             W+  +     ++++    D  E    VAHN++F+     +  ++     IP  R+I T
Sbjct: 61  HTWEMLKDEPKFAEIVDQFLDFIEDSTLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120

Query: 97  SVLARTN--GLPSSLKNACLALNFSEH 121
           + +AR    G P+SL   C   + S  
Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLD 147


>gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
 gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
          Length = 209

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 8/119 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +         P  L   L D  V+ + H + F+  +     G+        CT 
Sbjct: 49  GDGSADVVQIRPSDPAPERLKAVLADAGVVKIFHFARFDLAVLFNAFGV--MPAPVYCTK 106

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
             S LART      LK+    L     L+K ++     A     S     Y  +   H+
Sbjct: 107 IASKLARTYTDRHGLKDVVREL-VGVDLSKQQQSSDWGA--ATLSQAQIDYAASDVLHL 162


>gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
 gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
          Length = 206

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            D    +    +      +L Q L D T++ + H + F+        G+    +   CT 
Sbjct: 46  GDGSADVIQIAQGQREAPNLKQLLADPTIVKIFHFARFDLAALSNAFGV--MPQPVYCTK 103

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKAL 131
           + +R     +    LK+    L  +  L+K ++    
Sbjct: 104 IASRLIRTYTDRHGLKDLVREL-LNIELSKQQQSSDW 139


>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
 gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
          Length = 961

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 50/172 (29%), Gaps = 30/172 (17%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQAVI-TLCA-YAWDDEPV------------- 42
           M    +D ET    S   + +VG+    E   I  +   Y     P+             
Sbjct: 1   MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
            + D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T   
Sbjct: 61  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 118

Query: 100 ARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARF----CKGSIDSPP 144
            +      S   L                 +  AL   +    C   ID  P
Sbjct: 119 LKICFPSLSSYQLGMVSSHFGLEHDRPHQADSDALATAYALLKCLEEIDELP 170


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR- 101
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I++PS ++ICT  L++ 
Sbjct: 63  DELEFDKVWEKIKHYFNENLVI--AHNASFDISVLRNTLELYNIEMPSFQYICTMKLSKN 120

Query: 102 -TNGLPSS-LKNACLALNFS 119
             + L ++ L      L + 
Sbjct: 121 FYSNLDNARLNTVNNFLGYE 140


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR- 101
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I++PS ++ICT  L++ 
Sbjct: 63  DELEFDKVWEKIKHYFNENLVI--AHNASFDISVLRNTLELYNIEMPSFQYICTMKLSKN 120

Query: 102 -TNGLPSS-LKNACLALNFS 119
             + L ++ L      L + 
Sbjct: 121 FYSNLDNARLNTVNNFLGYE 140


>gi|221127142|ref|XP_002166917.1| PREDICTED: similar to DNA polymerase gamma [Hydra magnipapillata]
          Length = 592

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 52/196 (26%), Gaps = 32/196 (16%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           +GR R   Q       GR    V  PQ +     +   +  T                  
Sbjct: 180 NGRKRIMSQKTVWFDDGR---GVILPQVVTAGTVTRRSVEAT-WLTASNPMFNRIGSELK 235

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED--------------WKIKAFANGED 407
             +R+      G  LV AD+   E  + A I G+                     ++  D
Sbjct: 236 SLIRT----PPGYVLVGADVDSQELWI-ASILGDAMFSNMHGSTALSWMTLQGKKSDRTD 290

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T                R   KV      Y  G K    +      ++       K
Sbjct: 291 LHSKTADTI---------GMSRDQAKVFNYGRIYGAGEKFAVRLLMQFNHNISLAQAEEK 341

Query: 468 STSTFEDWEQAESHHL 483
           +   +   +  +S+ L
Sbjct: 342 AAKLYATTKGIKSYLL 357


>gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
          Length = 1031

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLG 85
             I    +   DE V        +    + +  L D    +  +AHN++F+R   ++  G
Sbjct: 110 PEIVALTH-ITDEDV------AGAPRAKEAVSALADFVGGLPVLAHNAVFDRTFIERVPG 162

Query: 86  IDIPSKRWICTSVLAR 101
               S  WI T  L+R
Sbjct: 163 GHEVSNTWIDTLSLSR 178


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTN--GL 105
            +    L ++ D  V  VAHN+ F+R       +K     I  +RW+ T  +A+    G+
Sbjct: 73  EIADRFLDFVGDSVV--VAHNAAFDRQFVNFELEKCGKAPIHEERWVDTLAMAKKRFPGM 130

Query: 106 PSSLKNACLALNFS 119
            +SL   C     S
Sbjct: 131 YNSLDALCKRFKIS 144


>gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
 gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
          Length = 195

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 37/130 (28%)

Query: 1   MSKLFIDIE------------TRSPQPLPKVGVWA------------YAEQAVITLCAYA 36
           M K+FID E            T     +   G               Y E++   +  ++
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINSRGEEKVSFAKNFFFDVDYIEESAEAIHGFS 60

Query: 37  WDDEPVKLWDRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
            +    KL   ++         ++   L+D   + +AHN  F+R      F +   ++  
Sbjct: 61  VE----KLKILSKGKKFKDLASEISSDLKDG--IFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 90  SKRWICTSVL 99
            K + CT   
Sbjct: 115 PKEFFCTMEY 124


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR- 101
           D  E   +   +  Y     V+  AHN+ F+  + + TL    +++PS ++ICT  L+R 
Sbjct: 63  DELEFDKVWEKIKHYFNKNLVI--AHNASFDISVLRNTLELYNLEMPSFQYICTMKLSRN 120

Query: 102 -TNGLPSS-LKNACLALNFS 119
             + L ++ L      L + 
Sbjct: 121 FYSNLDNARLNTVNNFLGYE 140


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 183 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 232


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 16/131 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  Y ++  +     +  D    +    +      +L++ L D
Sbjct: 22  IAVDTET--------LGLQPYRDRLCVVQL--SSGDGTADIIQIAKGQNSAPNLVKLLED 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SVLARTNGLPSSLKNACLALNFSE 120
           + +  + H   F+  +   T G  I      CT   S L RT      LK  C  L  + 
Sbjct: 72  KAITKIFHFGRFDLAILAHTFG--IMPDVVFCTKIASKLTRTYTDRHGLKEICSEL-LNV 128

Query: 121 HLTKMEEGKAL 131
           +++K ++    
Sbjct: 129 NISKQQQSSDW 139


>gi|328720373|ref|XP_001951196.2| PREDICTED: stromal interaction molecule homolog [Acyrthosiphon
           pisum]
          Length = 657

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 26/186 (13%)

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D++ + K +      +K+L E   ++ + +I    +   L   L       + D +   L
Sbjct: 250 DMEGLQKAETAYEDLQKEL-EKAKQVQEFVI---TEKANLEKQLQEQQ---IKDENSSVL 302

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
           KS  S+  I+QL  ++   R   + +     +            R     +G  +  + +
Sbjct: 303 KSSYSNLEISQLKTEIESLRGELARAEGELDD------------RCWTPPHGLQQWLQLT 350

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
             V     + ++  +E+ L Q  +A  +       L           ++++GK +   D 
Sbjct: 351 HEVENKSYIKKKLSAEKQLQQAREACEKLRKKRSSLV-------GAFVSTHGKSIDDVDR 403

Query: 382 AGIEAR 387
           + +EAR
Sbjct: 404 SIVEAR 409


>gi|118362468|ref|XP_001014461.1| hypothetical protein TTHERM_00522830 [Tetrahymena thermophila]
 gi|89296228|gb|EAR94216.1| hypothetical protein TTHERM_00522830 [Tetrahymena thermophila SB210]
          Length = 2721

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/166 (8%), Positives = 56/166 (33%), Gaps = 13/166 (7%)

Query: 449  KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP---EFAVKDKLIGTACEL 505
            + +  +    L+ +    +   T +     +   ++ +  +    +   +++      +L
Sbjct: 1129 QKLMQNYLHKLKDYKNYRQKKVTLQAKNTEKVEKVFQKKHFRAWYKLGCRNQSFRYLVDL 1188

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
            VK+   ++   +++  +        +++    I  +       +   R ++         
Sbjct: 1189 VKRLQLSRFFVIMKYLRQRDFQKQKIIKSDHLIFLKLTIFNAFVKYYRKRKY------ER 1242

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
            + L Y   +   +Y   +  Q  +  +Y     +N+    ++ I+ 
Sbjct: 1243 KSLEYIKCRQQINYAKQSMKQWKKLHSYN----KNVTYLCAKSIIA 1284


>gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
 gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
          Length = 204

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    L      +     L   L D  ++ + H + F+  +FK  LG+D       C
Sbjct: 42  SAGDGDAHLVTFDAGAYDAPHLKAVLSDPQLLKIFHFARFDVAVFKHWLGVDTTP--IYC 99

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T   S LART      LK+    +     L+K ++     A   + +     Y  +   H
Sbjct: 100 TKIASKLARTYTDRHGLKDVVREMT-GVELSKQQQSSDWAA--AELTEAQRAYAASDVLH 156

Query: 153 V 153
           +
Sbjct: 157 L 157


>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
 gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
          Length = 958

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 52/172 (30%), Gaps = 30/172 (17%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQAVI-TLCA-YAWDDEPV------------- 42
           M    +D ET    S   + +VG+    E   I  +   Y     P+             
Sbjct: 1   MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
            + D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T   
Sbjct: 61  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 118

Query: 100 ARTN--GLPSS-LKNACLALNFSEHLTKMEEGKALIARF----CKGSIDSPP 144
            +     LPS  L                 +  AL   +    C   ID  P
Sbjct: 119 LKICFPSLPSYQLGMVSSHFGLEHDRPHQADSDALATAYALLKCLEEIDELP 170


>gi|167515430|ref|XP_001742056.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778680|gb|EDQ92294.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2049

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 81/251 (32%), Gaps = 19/251 (7%)

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR- 200
           + P  C R   V      G + +RD+ A RELF               +++   +     
Sbjct: 762 NDPNCCARVMMVAGEHRIGIFAERDIPAGRELFFNYRYGPTDALKYVSVERDQEEEPVDW 821

Query: 201 IDLDLVLKLQELIAQERK--KLDEDIVKLTDGIIRSS--RQTYALRMYLFLITGIDLVDM 256
           +D+D V  L +            +   +LT  I+R    ++   +R  L L  G     +
Sbjct: 822 LDIDWVQPLSDFTGVTMAVGTAGKPQARLTATILRHPLLKRRVQVRGQLHLAAGPVDPKL 881

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
            EGT+  IL       +A   I             L+ L + +  + R+        AS 
Sbjct: 882 PEGTVHYILVLDTSGSMAGRPI-------REINTVLHELPKRLEGNARVHVVSYNSTASL 934

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
                    + +++  +             + R      P   A D VR C +       
Sbjct: 935 -----YPDARLEDMELRGMGLTSFMSAFHGMIRLLEQLKP--QAQDSVRICFMTDGENTR 987

Query: 377 VVADLAGIEAR 387
              DLA IE R
Sbjct: 988 DSYDLAMIELR 998


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 76  EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 125


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 183 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 232


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D  E       +L    +  E  + VAHN+ F+    K   K LGI    +  I T  L+
Sbjct: 507 DMLEGKNTIDQVLPDFLNFIENCILVAHNATFDITFLKEKIKELGIAYKPQPVIDTMTLS 566

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALI 132
           +       LK   L    +    KMEE    +
Sbjct: 567 QRF-FSEFLKYFSLKRLATVFKVKMEEHHRAL 597


>gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
 gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
          Length = 206

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            D    +    +      +L   L D     + H + F+  + ++ LGI +    W CT 
Sbjct: 46  GDGSADVVQIEKGMTAAPNLTALLSDPARTKIFHYARFDVAILRQNLGIHVDPV-W-CTK 103

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           + ++     +    LK+    L     ++K ++     A   + +     Y  +   H+ 
Sbjct: 104 IASKLCRTYTDRHGLKDITREL-LGVDISKQQQSSDWAAE--QLTDAQLAYAASDVLHLH 160

Query: 155 AWQLFGEYCKR 165
           A +   E+  R
Sbjct: 161 ALKEKLEFMLR 171


>gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
          Length = 381

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 71/251 (28%), Gaps = 40/251 (15%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
             D+E  S        +  Y E+  + L  +A       +         P  L     + 
Sbjct: 31  ACDLEADS--------MHHYQEK--VCLIQFAVPGYAAIVDPLAAPDISP--LAPLFANA 78

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            +  V H + ++     +  G  +       T +  +  G       A L   F   L K
Sbjct: 79  AIRKVFHGADYDIRSLHRDFG--MEVNNLFDTMIACQLLGEREFGLAAQLRKRFGVELDK 136

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD----VEATRELFKRLIPL 180
             +      R     +       T       WQL  +   +     VE   EL  R+   
Sbjct: 137 QYQRADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEEECELLSRVRVA 196

Query: 181 SDGERD------------------LWLLDQTINDRGYRIDLDLVLKL----QELIAQERK 218
             G+                    L  L    + R  ++D+     L       +A+ R 
Sbjct: 197 ERGDEPFFLRFKGASRMDGRTLAVLEELLAFRDGRARQVDVPPFKVLGTDTVRELAERRP 256

Query: 219 KLDEDIVKLTD 229
           +L E++  +T 
Sbjct: 257 RLPEELQGITG 267


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLW----DRTEQSAM 53
           +D+ET        +    V+        E    TL     D  PV +     D    + +
Sbjct: 24  VDVETTGLARDDRIVSAAVYRLDAQGNVEDHWYTLVNPERDPGPVWIHGLTTDVLAGAPL 83

Query: 54  PSDL---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLPS 107
             ++        D  V+ VAHN++F+  +  +       +       CT  LA+   LP 
Sbjct: 84  FPEIAAEFAARLDGRVL-VAHNAMFDWQMIAREYARAESAAPVRQRLCTIALAKELSLPL 142

Query: 108 S---LKNACLALNFSEHLTK 124
               L++        +    
Sbjct: 143 PNHKLESLAAHFGVVQQRAH 162


>gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 105

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
           +Q  + DI+   M    K          ++L VHDE++ E P      +G L   +M
Sbjct: 25  IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 81


>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
 gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
          Length = 971

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 52/172 (30%), Gaps = 30/172 (17%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQAVI-TLCA-YAWDDEPV------------- 42
           M    +D ET    S   + +VG+    E   I  +   Y     P+             
Sbjct: 14  MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 73

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
            + D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T   
Sbjct: 74  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 131

Query: 100 ARTN--GLPSS-LKNACLALNFSEHLTKMEEGKALIARF----CKGSIDSPP 144
            +     LPS  L                 +  AL   +    C   ID  P
Sbjct: 132 LKICFPSLPSYQLGMVSSHFGLEHDRPHQADSDALATAYALLKCLEEIDELP 183


>gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 26/126 (20%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW--------------------MQD 487
                S     +  +       + + +  + ++                         + 
Sbjct: 1   MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYLPDIKARGPRRS 60

Query: 488 QYPEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                A+   + GTA +++K+A      W    +  L+L   + +     VQE    +A 
Sbjct: 61  AAERTAINAPMQGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETAC 120

Query: 542 RVANVP 547
           +     
Sbjct: 121 QHLRDC 126



 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E  ++   +    L   M
Sbjct: 72  QGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCM 127


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 22/140 (15%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRT----EQSAM 53
           +D+ET        +    V+        E    TL     D  PV +   T    E + +
Sbjct: 22  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 81

Query: 54  PSDLLQYLR---DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS 107
             ++   L    D  V+ VAHN++F+  +  +     GI  P +R +CT  LA+   LP 
Sbjct: 82  FPEIAGELSRRLDGRVL-VAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALPL 140

Query: 108 S---LKNACLALNFSEHLTK 124
               L+         +    
Sbjct: 141 PNHKLETLAAHFGVEQRRAH 160


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401]
 gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 220

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEH 121
           VAHN+ F+R +             WICT  LAR    GL  S          +  
Sbjct: 78  VAHNASFDRCVL------PEMPGEWICTMKLARRLWPGLKYSNMALYKTRKLNVQ 126


>gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium]
          Length = 202

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 19/159 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P+             + L   +  D    L     +   P  L   L D
Sbjct: 20  IAIDTETMGLNPMRDR----------LCLVQLSSGDGDAHLVHFQGRYEAPR-LKALLAD 68

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSE 120
              + + H + F+  +  + LG+        CT +   L RTN     LK+ C  L    
Sbjct: 69  HNRLKLFHYARFDIAMLARWLGVTCTP--VYCTKIASRLTRTNTDKHGLKDLCRDL-LGI 125

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
            L+K ++     +     + +   Y  +   H+ A +  
Sbjct: 126 DLSKQQQTSDWGS--GDLTAEQQAYAASDVLHLHALKAK 162


>gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 141

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 17/95 (17%)

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNA 617
            +     RRL   D     +  N +  +   R            +Q  + DI+ + M   
Sbjct: 27  FVETIFGRRLYLPD----INAKNQSLRKGAERMAINAP------MQGTAADIIKKAMVAV 76

Query: 618 ----TKNGYD--IVLTVHDEIVSETPDTPYFSVGT 646
                ++G D  ++L VHDE+V E  +     V  
Sbjct: 77  NGWLDESGLDARVILQVHDELVLEVREDLVDQVSE 111


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 217

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLA 115
           L + L D ++  + H + F+  + +  LGI +     +CT + AR           A L 
Sbjct: 75  LKRVLADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALC 132

Query: 116 LN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            +     L+K ++     A+  K    +         H   W         D E  REL 
Sbjct: 133 RDMLGVELSKQQQTSDWGAKELKPEQLAYAASDVLYLHA-LWD--KMSALLDREGRRELA 189

Query: 175 KRLI 178
           +   
Sbjct: 190 QACY 193


>gi|114611968|ref|XP_518933.2| PREDICTED: MAD1-like 1 protein [Pan troglodytes]
          Length = 718

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 82/275 (29%), Gaps = 19/275 (6%)

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGS-------IDSPPYDCTRANHVQAWQLFGE 161
           +              +++E   L  + C+ +         S          ++  +    
Sbjct: 174 MDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLC 233

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKL 220
             ++D    + +   L+ L   ER+L  L +     R  R    L+ +  E + ++  + 
Sbjct: 234 LQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQ 293

Query: 221 DEDIVKLTDGIIRSSRQTYALRMY--LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           ++    L    + + R    L+ +  L    G+ +           LS   +    ++L 
Sbjct: 294 EKMQETLVGLELENERLLAKLQSWERLDQTMGLSIR------TPEDLSRFVVELQQRELA 347

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L    S+ ++  +   L +A       LR         R  R +      +   R     
Sbjct: 348 LKDKNSAVTSSAR--GLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLT 405

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           +        L   ++   P   +    R    A +
Sbjct: 406 KERDGMRAILGSYDSELTPAEYSPQLTRRMREAED 440


>gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 206

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 26/178 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +++D    L       A P+ L + L D+ +  + H + F+  +    L       
Sbjct: 40  LIQLSFNDGNAHLIQFKNDYAAPN-LRKILGDKNITKIFHFARFDVSIICYYLETWALPC 98

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
              CT + +R     +   SLK  CL L     L K ++                  D  
Sbjct: 99  --YCTKIASRLVRTYTDNHSLKELCLEL-LDTKLNKQQQSS----------------DWG 139

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             N          Y   DV    ++ ++L  + + E    L  +       R++LDL+
Sbjct: 140 SENLTDK---QKSYAASDVLYLHKIKEKLDLMLERENRKELAQKCFEFLPIRVELDLM 194


>gi|170086167|ref|XP_001874307.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651859|gb|EDR16099.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1064

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 60/304 (19%)

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ---LAKDLILNRLAS 284
            DG   +           F   G   +       K  L  + +      A+D ILN++  
Sbjct: 540 KDGEKANVGSPLGKSFIKFAQDG--TMKSPGDEAKEALDMNALCSYWISARDRILNQMVV 597

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
              A  KL  L +  S +             + G     +  PQ +     +   + +T 
Sbjct: 598 WQDAKNKL-GLPKFSSDEDN---------GKKWG-----IILPQVITMGTVTRRAIEKT- 641

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED-------- 396
                              +++ + A  G  +V AD+   E  + + +            
Sbjct: 642 ----WLTASNAKKNRVGSELKAMVRAPEGYAIVGADVDSEELWISSCMGDAQFGLHGATA 697

Query: 397 ----WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM- 451
                     A G D++  T +              R   KV   +  Y  G +    + 
Sbjct: 698 IGWMTLEGTKAAGTDLHSKTAS-ILGIS--------RDQAKVFNYSRIYGAGMRHAILLL 748

Query: 452 ----ASHCGLDLQQFSQNVKSTSTFEDWEQA---ESHHL------WMQDQYPEFAVKDKL 498
               AS      Q+ ++N+ +++  ++  +    E          ++ ++  E A+ DK 
Sbjct: 749 LQSNASMLPEIAQKLAENLYASTKGKNTHRTDIFERKFWFGGTESYLFNKLEEIALSDKP 808

Query: 499 IGTA 502
              A
Sbjct: 809 QTPA 812


>gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 206

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWI 94
           +  D    L            L   L D  V+ + H + F+  + +  LG+         
Sbjct: 43  STGDGTAHLVRFNGTDYSAPRLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTK 102

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
             S L RT     SLK  CL L     L K ++    
Sbjct: 103 IASRLVRTYTDHHSLKELCLDL-LGVRLNKGKQSSDW 138


>gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 203

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  ++  +    L     Q     +L   L D+T   + H + F+    K+ L ID+  +
Sbjct: 38  LLQFSNGNGEAHLVHFVNQDYTAPNLKALLLDKTRCKIFHFARFDLASIKQYLSIDL--E 95

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKAL 131
              CT + ++     +    LK+ C  L  + +++K ++    
Sbjct: 96  NIFCTKISSKLVRTYTDNHGLKDLCREL-LNINISKQQQSSYW 137


>gi|119115237|ref|XP_310961.3| AGAP000175-PA [Anopheles gambiae str. PEST]
 gi|116130739|gb|EAA06485.3| AGAP000175-PA [Anopheles gambiae str. PEST]
          Length = 476

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 26/188 (13%)

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +I +  + K  E + +    L E   +L    I                  ++       
Sbjct: 222 KIHIRRMAKDVEGLLKAEVALKEMQKELEQARIEQEN-------VGKEKMDLERRLREAP 274

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           TL S  S   + QL +++ + R   + + +   +                   G     +
Sbjct: 275 TLSSSSSDLELQQLKQEIEVLRSELNRAEVEIHD------------HCWTPPQGLQSWLQ 322

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +  +    ++ ++  +E+ L Q  +A  +       L           ++++GK +   
Sbjct: 323 LTYELENKHHIRKRIMAEKQLEQAREACEKLRKKRSSLV-------GAFVSTHGKSIDDV 375

Query: 380 DLAGIEAR 387
           D + +EAR
Sbjct: 376 DRSIVEAR 383


>gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 203

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 25/161 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  ++  +    L     Q     +L   L D+T   + H + F+    KK L ID+  +
Sbjct: 38  LLQFSNGNGAAHLVHFINQDYTAPNLKALLLDKTRCKIFHFARFDLASIKKYLSIDL--E 95

Query: 92  RWICT---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
              CT   S L RT      LK+ C  L  + +++K ++                    T
Sbjct: 96  NIFCTKISSKLVRTYTDSHGLKDLCREL-LNINISKQQQSSYW---------------GT 139

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
               ++      EY  +DV    +L   L  +   E  L L
Sbjct: 140 DNLSLEQ----KEYAAKDVLYLHQLKDILQKMLFRENRLEL 176


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTN-- 103
           +  +P + L++L D   + VAHN+ F+    R+  KK LG D     ++ T  LA++   
Sbjct: 426 EEVLP-EFLEFLEDS--ILVAHNANFDYRFLRLWIKKVLGKDWEKP-YVDTLALAKSLLR 481

Query: 104 GLPSSLKNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
               SL +    L      H   +++ +     F +          T+ + ++  +
Sbjct: 482 LKSYSLDSVVKKLGLGSFRHHRALDDARVTAQVFLRFIEMMKKIGITKLSEMEKLK 537


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 24/141 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLW----DRTEQSA- 52
           +D+ET        +    V+        E    TL     D  PV +     D  E +  
Sbjct: 25  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVLEGAPL 84

Query: 53  ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLP 106
              +  +    L D   + VAHN++F+  +  +               CT  L++  GLP
Sbjct: 85  FRDIAQEFSARLADR--VLVAHNAVFDWSMIAREYARAETEAPVRQRLCTIALSKELGLP 142

Query: 107 SS---LKNACLALNFSEHLTK 124
                L++        +    
Sbjct: 143 LPNHKLESLAAHFGVVQQRAH 163


>gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 235

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 617 ATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPS 656
             ++   IVL +HDE++ + P       +  + ++M     
Sbjct: 138 LEEHDIHIVLQIHDELIFDVPQDVSQDVLKEISNIMLNAIP 178


>gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 26/126 (20%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW--------------------MQD 487
                S     +  +       + + +  + ++                         + 
Sbjct: 1   LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYLPDIKARGPRRS 60

Query: 488 QYPEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                A+   + GTA +++K+A      W    +  L+L   + +     VQE    +A 
Sbjct: 61  AAERTAINAPMQGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETAC 120

Query: 542 RVANVP 547
           +     
Sbjct: 121 QHLRDC 126



 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651
           Q  + DI+   M          +    +++ VHDE+V E  ++   +    L   M
Sbjct: 72  QGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCM 127


>gi|11071869|emb|CAC14696.1| transposase [Pseudomonas sp.]
          Length = 459

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L+E +S   R R  L      R    +  +   +  P +  S  +L + I+ L   +
Sbjct: 178 YDALAEPLSDAHRRR--LDDLLKRRDNGKTTWLAWLRQSPVKPNSRHML-EHIERLKAWQ 234

Query: 352 TIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA-RVLAWIA--GEDWKIKAFANGE 406
            +  P G+       R   IA  G ++  ADLA  EA R  A +A    +          
Sbjct: 235 ALDLPSGIERSVHQNRLLKIAREGGQMTPADLAKFEAQRRYATLASLAIEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  ++ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEAKQAGRDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWDAF 360


>gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 134

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 602 VQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M +      ++G    ++L VHDE++ E P          L   M + 
Sbjct: 53  IQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRA 112


>gi|218887625|ref|YP_002436946.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758579|gb|ACL09478.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 681

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 590 ERTYGG--KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
             TY     + E +    +RD L E +      G  +V  V D  V+   +    S+  L
Sbjct: 19  LTTYPPLSYMVEGVPAGFARD-LAEAVAQ--AAGRKVVFHVDDNGVALRDELAGGSLDAL 75

Query: 648 CSLMTKNPS 656
            +LM + P 
Sbjct: 76  -ALMAETPE 83


>gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583]
          Length = 206

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +    +      +L++ L D+ +  + H   F+  +   T G  I      C
Sbjct: 44  SSGDGTADIIQIAKGQNSAPNLVKLLADKAITKIFHFGRFDLAILAHTFG--IMPDAVFC 101

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           T   S L RT      LK  C  L  + +++K ++    
Sbjct: 102 TKIASKLTRTYTDRHGLKEICSEL-LNVNISKQQQSSDW 139


>gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 222

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           VAHN+ F+R +            +WICT  LAR         N  L  +    +T
Sbjct: 78  VAHNASFDRRML------PEMPGQWICTMTLARQLWPGQKYGNQALRHSLKLDVT 126


>gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +    +      +L+  L D+T+  + H   F+  +   T G+        C
Sbjct: 44  SSGDGTADIIQIAKGQNSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGV--MPDAVFC 101

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           T   S L RT      LK  C  L  + +++K ++    
Sbjct: 102 TKLASKLTRTYTDRHGLKEICSEL-LNVNISKQQQSSDW 139


>gi|160935281|ref|ZP_02082663.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441639|gb|EDP19339.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
          Length = 507

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 10/122 (8%)

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-RAI 431
           G  LV      I     A  +     I+A  +GE +Y             KV+  + RA 
Sbjct: 204 GMCLVNCPFGAI-----ADKSQIFQVIRAIQSGERVYAAVAPAFVGQFGPKVTPGKLRAA 258

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +  A  ++                +Q+    V     F       +  +  +  +PE
Sbjct: 259 MKALGFADVFEVAVGADLCATQEAIDFIQE----VPEKLPFMATSCCPAWSMMAKKLFPE 314

Query: 492 FA 493
            A
Sbjct: 315 HA 316


>gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 206

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT- 96
            D    +    +      +L+  L D+T+  + H   F+  +   T G+        CT 
Sbjct: 46  GDGTADIIQIAKGQNSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGV--MPDAVFCTK 103

Query: 97  --SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
             S L RT      LK  C  L  + +++K ++    
Sbjct: 104 LASKLTRTYTDRHGLKEICSEL-LNVNISKQQQSSDW 139


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTN--GL 105
            +    ++++ D  V  VAHN+ F+R       +K     I   RW+ T  +A+    G+
Sbjct: 73  EIADRFVEFVGDSVV--VAHNAAFDRQFVNFELEKCGRAPIREDRWVDTLAMAKKRFPGM 130

Query: 106 PSSLKNACLALNFS 119
            +SL   C     S
Sbjct: 131 YNSLDALCKRFKIS 144


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDE------TVMCVAHNSLFERILFKKTL---GIDI 88
           D  PV +   T  +   + L   + DE        + VAHN++F+  +  +     G   
Sbjct: 65  DPGPVWIHGLTSDTLADAPLFSEIADELAQHLDGRVLVAHNAVFDWSMLAREYARAGSAA 124

Query: 89  PSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTK 124
           P ++ +CT  L++  GLP     L++        +    
Sbjct: 125 PVRQRLCTIALSKELGLPLPNHKLESLAAHYGVVQERAH 163


>gi|187729747|ref|YP_001837338.1| transposase-like protein [Acidithiobacillus caldus]
 gi|167782132|gb|ACA00203.1| transposase-like protein [Acidithiobacillus caldus]
          Length = 988

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L+E +S +G              G+ +   +  Q+  +      +  + I+ L   +
Sbjct: 178 YDALAEPLS-NGHRHRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHML--EHIERLKAWQ 234

Query: 352 TIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGE 406
            +  P G+       R   IA  G ++  ADL+  E   R    +A   +          
Sbjct: 235 ALDLPAGIERLVHQNRLLKIAREGGQMTPADLSKFEPQRRYATLMALAIEGMATITDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  ++ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWDAF 360


>gi|42741722|gb|AAS45120.1| transposase [Alcaligenes faecalis]
          Length = 988

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 90/273 (32%), Gaps = 23/273 (8%)

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            Q R++   ++  +         Q + +  Y   +  +  + M       + S       
Sbjct: 97  EQTRREHLVELQTVLGF------QPFTMSHYRQAVQWLTELAMQTDKGVVLASALVDHLR 150

Query: 274 AKDLILNRLASSGSAILK---------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            + +IL  + +   A  +          + L+E +S   R R           G+ +   
Sbjct: 151 RQSVILPAINAVERATAEAITRANRRIYDALAEPLSDAHRRR-LDDLLKRRDNGKTTWLA 209

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV--RSCIIASNGKKLVVADLA 382
           +  Q+  +      +  + I+ L   + +  P G+       R   IA  G ++  ADLA
Sbjct: 210 WLRQSPAKPNSRHML--EHIERLKAWQALDLPSGIERLVHQNRLLKIAREGGQMTPADLA 267

Query: 383 GIEA--RVLAWIA-GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
             EA  R    +A   +          D++     K FN   +K  ++ +A GK +   +
Sbjct: 268 KFEAQRRYATLVALAIEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKV 327

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
              G        A   G D     + V S   F
Sbjct: 328 RLFGRIGQALIEAKQAGRDPFAAIEAVMSWDAF 360


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 50/152 (32%), Gaps = 10/152 (6%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI--CT 96
           V+L    E   +  +L   L     + VAHN  F+        + LG DIP       CT
Sbjct: 74  VELIHAPEFEGIARELRDLL--AGRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCT 131

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA-LIARFCKGSIDSPPYDCTRANHVQA 155
             L+R+     SL + C                A   A      +D+ P        + A
Sbjct: 132 MKLSRSLIGVGSLADCCREFGIDNEDAHSALSDAHATALLLGRLMDADPEWSGWRRRLDA 191

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
            +  GE+        R   + L   S  E +L
Sbjct: 192 AEEAGEHWPELTSFERR--EWLPRRSHVENNL 221


>gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
 gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 19/147 (12%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            D    +           +L + L D   M + H + F+  + +  LGI++    W CT 
Sbjct: 46  GDGTADVVQIARGQRAAPNLARLLTDPAKMKIFHFARFDLAVLRHNLGIEVAPV-W-CTK 103

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
           +            +  +      H  K    + L     K    S     T  +   A+ 
Sbjct: 104 I-----------ASKLVRTYTDRHGLKDITRELLGVDLSKQQQSSDWAAETLTDAQLAY- 151

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE 184
                   DV     L ++L  + + E
Sbjct: 152 -----AASDVLHLHALREKLAAMLERE 173


>gi|297679748|ref|XP_002817689.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD1-like
           [Pongo abelii]
          Length = 689

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 81/265 (30%), Gaps = 15/265 (5%)

Query: 117 NFSEHLTKMEEGKALIARFCKGS-------IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                  +++E   L  + C+ +         S          ++  +      ++D   
Sbjct: 182 RLQSEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAI 241

Query: 170 TRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            + +   L+ L   ER+L  L +     R  R    L+ +  E + ++  + ++    L 
Sbjct: 242 VKNMKSELVRLPRLERELKQLREESARLREMRETNGLLQEELEGLQRKLGRQEKMQETLV 301

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + + R    L+ +  L        +S  T    LS   +    ++L L    S+ ++
Sbjct: 302 GLELENERLLAKLQSWERLDQ---TTGLSIRT-PEDLSRFVVELQQRELALKDKNSAVTS 357

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
             +   L +A       LR         R  R +      +   R     +        L
Sbjct: 358 SAR--GLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAIL 415

Query: 348 NRGETIADPLGLASDCVRSCIIASN 372
              ++   P   +    R    A +
Sbjct: 416 GSYDSELTPAEYSPQLTRRMREAED 440


>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 478

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 23/132 (17%)

Query: 7   DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           D ET S   +           + GV AY         A+ + D P ++     +      
Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115
           L   L DE V  V  N  ++R + +   GI++    +  T + +     +        L+
Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462

Query: 116 LNFSEHLTKMEE 127
             + +H T   E
Sbjct: 463 DRWLKHKTITFE 474


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLW----DRTEQSAM 53
           +D+ET        +    V+        E    TL     D  PV +     D  E + +
Sbjct: 24  VDVETTGLARDDRIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIHGLTSDVLEGAPL 83

Query: 54  PSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVLARTNGLPSS 108
             ++ + L       + VAHN+ F+  +  +         P ++ +CT  LA+   LP  
Sbjct: 84  FPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIALAKELRLPLP 143

Query: 109 ---LKNACLALNFSEHLTK 124
              L +        +    
Sbjct: 144 NHKLASLAAHFGVVQQQAH 162


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLW----DRTEQSAM 53
           +D+ET        +    V+        E    TL     D  PV +     D  E + +
Sbjct: 22  VDVETTGLARDDRIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIHGLTSDVLEGAPL 81

Query: 54  PSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVLARTNGLPSS 108
             ++ + L       + VAHN+ F+  +  +         P ++ +CT  LA+   LP  
Sbjct: 82  FPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIALAKELRLPLP 141

Query: 109 ---LKNACLALNFSEHLTK 124
              L +        +    
Sbjct: 142 NHKLASLAAHFGVVQQQAH 160


>gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
 gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
          Length = 229

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTN- 103
           +   +  +L +++ D+ ++  AHN+ F+R      +        P  +WI T  LAR   
Sbjct: 70  KFGQIADELCEFIGDKRII--AHNAAFDRGFINMEMERLSRVCHPDDQWIDTLELARNKF 127

Query: 104 -GLPSSLKNACLALNFS 119
            G+ +SL   C   N S
Sbjct: 128 PGMANSLDALCRRFNIS 144


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKGYFNNNLVI--AHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKGYFNNNLVI--AHNASFDMSVLRSTLELYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKGYFNNNLVI--AHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKGYFNNNLVI--AHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKGYFNNNLVI--AHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  E   +   +  Y  +  V+  AHN+ F+  + + TL    I +PS  +ICT  L++ 
Sbjct: 63  DELEFDKIWGKIKGYFNNNLVI--AHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN 120

Query: 103 N 103
            
Sbjct: 121 F 121


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLW----DRTEQSAM 53
           +D+ET        +    V+        E    TL     D  PV +     D  E + +
Sbjct: 22  VDVETTGLARDDRIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIHGLTSDVLEGAPL 81

Query: 54  PSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVLARTNGLPSS 108
             ++ + L       + VAHN+ F+  +  +         P ++ +CT  LA+   LP  
Sbjct: 82  FPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIALAKELRLPLP 141

Query: 109 ---LKNACLALNFSEHLTK 124
              L +        +    
Sbjct: 142 NHKLASLAAHFGVVQQRAH 160


>gi|301778429|ref|XP_002924648.1| PREDICTED: LOW QUALITY PROTEIN: periplakin-like [Ailuropoda
            melanoleuca]
          Length = 1759

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 76/232 (32%), Gaps = 29/232 (12%)

Query: 104  GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             +          L   + +    E   L  ++      +      +   ++      E  
Sbjct: 1109 AMAEGKITVKEVLKVEKDVATEREVGDLKHQYEDEEAKARANQREKTELLRKIWALEEEN 1168

Query: 164  KR-------------DVEATRELFKRLIPLSDGERDLWLLDQTIN----------DRGYR 200
             R             D EA RE+    + L + ER     ++ +            RG +
Sbjct: 1169 ARVLVQEKVREIVRPDPEAEREVANLRLELVEQERKYRAAEEQLKSYQSELEALRRRGPQ 1228

Query: 201  IDLDLVLKLQ------ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            +++  V K          + +E ++L E+IV  T  I R   + Y L+  +  +      
Sbjct: 1229 VEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKQEIQSLKDTKPQ 1288

Query: 255  DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              ++  ++ IL      Q  +++   R   S     +++   E  S + ++R
Sbjct: 1289 VQTKEVVQEILQFQEDPQTKEEVQSLRARLSEEQKKQVDLERERASQEEKIR 1340


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 18/131 (13%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            ID ET        +G+  + ++  +     +  D    +    + +    +L + L D 
Sbjct: 21  AIDTET--------MGLHPHRDRLCVVQL--SNGDGSADVVQIPQGATDAPNLKKLLGDP 70

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR----TNGLPSSLKNACLALNFSE 120
            V+ + H + F+     K  G+    +   CT + +R                  L    
Sbjct: 71  AVVKIFHFARFDLAALYKAFGV--MPQPVYCTKIASRLTRTYTDRHGLKDLVRELLGI-- 126

Query: 121 HLTKMEEGKAL 131
            L+K ++    
Sbjct: 127 DLSKQQQSSDW 137


>gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
          Length = 231

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
           P  + D      + S   +++ D  V+  AHN+ F+  + K       ++IP   + CT 
Sbjct: 82  PENVADAPSFDKVWSAAREFIADRLVI--AHNATFDMTILKAMLHWYKMEIPRIGYACTL 139

Query: 98  VLAR 101
            L+R
Sbjct: 140 RLSR 143


>gi|325661004|ref|ZP_08149631.1| hypothetical protein HMPREF0490_00363 [Lachnospiraceae bacterium
            4_1_37FAA]
 gi|325472511|gb|EGC75722.1| hypothetical protein HMPREF0490_00363 [Lachnospiraceae bacterium
            4_1_37FAA]
          Length = 1470

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 134/416 (32%), Gaps = 49/416 (11%)

Query: 125  MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--TRELFKRLIPLSD 182
            M  GK       K  ++   +       ++  +      ++ V    T  + + +    +
Sbjct: 732  MFAGKEAAYFLEKEQLEKEIHRTEEVLDLEHKKQEQLREQQKVLTADTDGVQEYVTNYFE 791

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
                 WL +Q       +     V++ QE + ++ KKL     +L   I  S+ +   L 
Sbjct: 792  N-YAGWLEEQQ----ERKEKRAQVMEAQEQLKEKEKKLCARAAELERKIPESAAKIKKLA 846

Query: 243  MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
              +  +  ++ +      +++  +     +   +L L + A       K   +SEA   D
Sbjct: 847  EEILSLQRLEDIFRKSDLVEA--NQREWKEKKAELELEKEALWRLVQAKEREISEA---D 901

Query: 303  GRLRGTLQFYGASRTG--RWS--GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            GR+R         + G  R++       P   P  ER EE L   I A  +         
Sbjct: 902  GRIRQITAQIMERKMGWERYAAYYKEEIPIQEPIPERLEEELDGAIAAFEKENKDVREKS 961

Query: 359  LASDCVRSCII--------ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                 +R  I              K++       E + LA ++ E+  I+A         
Sbjct: 962  ETLQVIREQITSYLRELRSRKADVKMLEQLY---EEQKLAEVSDEE--IEAQKEHL---- 1012

Query: 411  TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
                      +++    QR   KV EL L           +A        +  +   +  
Sbjct: 1013 ----------MEEEKLLQRCEKKVSELVLACTRFQSQADVIAGQIRERFYRIERLPIAAG 1062

Query: 471  TFE-DWEQAESHHLWMQDQYPEFAVKDKLIGTACELV-----KKAWRAKHQGVLQL 520
            T E + E+ +      + +  E   K K  G A E +     K  W A+   +  +
Sbjct: 1063 TIEIEKERQKELQQQCKRELAELFRKQKETGKAQEEIQTMIGKITWVAEEYHIKDM 1118


>gi|302684645|ref|XP_003032003.1| hypothetical protein SCHCODRAFT_67730 [Schizophyllum commune H4-8]
 gi|300105696|gb|EFI97100.1| hypothetical protein SCHCODRAFT_67730 [Schizophyllum commune H4-8]
          Length = 1257

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 30/128 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARV----------------LAWIAGEDWKIKAFAN 404
              +++ + A  G  +V AD+   E  +                L W+  E  K    + 
Sbjct: 832 GSELKAMVRAPPGYAIVGADVDSEELWISSCMGDAQFGIHGATALGWMTLEGTK----SA 887

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ-QFS 463
           G D++  T +              R   KV   +  Y  G +    +       ++ + +
Sbjct: 888 GTDLHSKTAS-ILGIS--------RDQAKVFNYSRIYGAGMRHAVLLLMQSNASMKHEEA 938

Query: 464 QNVKSTST 471
           Q +     
Sbjct: 939 QKLAENLY 946


>gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
 gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
          Length = 204

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    L    +      +L   L +  V+ + H   F+  + ++ LG+        C
Sbjct: 42  SAGDGNAHLVQFEKGHYDAPNLTALLVNPAVLKIFHFGRFDIAVMQQYLGVKTGP--VYC 99

Query: 96  TSVLA---RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T + A   RT      LK+ C  L     L+K ++         K + +   Y  +   H
Sbjct: 100 TKIAAKLVRTFTERHGLKDLCREL-LGVELSKQQQTSDWGQ--AKLTPEQLSYAASDVLH 156

Query: 153 VQAWQLF 159
           + A +  
Sbjct: 157 LHALKEK 163


>gi|56130728|ref|YP_145631.1| transposase [Ralstonia metallidurans CH34]
 gi|94152581|ref|YP_581988.1| TnpA transposase Tn4380 mercury transposon Tn3 family [Cupriavidus
           metallidurans CH34]
 gi|94313399|ref|YP_586608.1| transposase Tn6050 [Cupriavidus metallidurans CH34]
 gi|94313520|ref|YP_586729.1| transposase Tn6050 [Cupriavidus metallidurans CH34]
 gi|170650766|ref|YP_001740006.1| Tn3 family transposase [Escherichia coli SMS-3-5]
 gi|226807866|ref|YP_002791515.1| Tn3 transposase [Enterobacter cloacae]
 gi|226810131|ref|YP_002791827.1| Tn3 transposase [Enterobacter cloacae]
 gi|264678651|ref|YP_003278558.1| transposase Tn3 [Comamonas testosteroni CNB-2]
 gi|56068718|emb|CAI11280.1| transposase [Cupriavidus metallidurans CH34]
 gi|93357251|gb|ABF11339.1| transposase Tn6050 [Cupriavidus metallidurans CH34]
 gi|93357372|gb|ABF11460.1| transposase Tn6050 [Cupriavidus metallidurans CH34]
 gi|93358951|gb|ABF13038.1| TnpA Transposase Tn4380 mercury transposon Tn3 family [Cupriavidus
           metallidurans CH34]
 gi|170522042|gb|ACB20219.1| Tn3 family transposase [Escherichia coli SMS-3-5]
 gi|197258076|gb|ACH56222.1| transposase [Achromobacter sp. AO22]
 gi|226426093|gb|ACO54186.1| Tn3 transposase [Enterobacter cloacae]
 gi|226426358|gb|ACO54450.1| Tn3 transposase [Enterobacter cloacae]
 gi|262209164|gb|ACY33262.1| transposase Tn3 [Comamonas testosteroni CNB-2]
          Length = 988

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L+E +S   R R  L      R    +  +   +  P +  S  +L + I+ L   +
Sbjct: 178 YDALAEPLSDAHRRR--LDDLLKRRDNGKTTWLAWLRQSPVKPNSRHML-EHIERLKAWQ 234

Query: 352 TIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGE 406
            +  P G+       R   IA  G ++  ADLA  EA  R    +A   +          
Sbjct: 235 ALDLPSGIERSVHQNRLLKIAREGGQMTPADLAKFEAQRRYATLVALAIEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  ++ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEAKQAGRDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWDAF 360


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI--CT 96
           V+L    E   +  +L   L     + VAHN  F+        + LG DIP       CT
Sbjct: 74  VELIHAPEFEGIARELRDLL--AGRVFVAHNVAFDSKFLLSEYRRLGADIPVNSHTMLCT 131

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTK 124
             L+R+     SL + C           
Sbjct: 132 MKLSRSLIGVGSLADCCREFGIDNEDAH 159


>gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            ID ET        +G+  + ++  +     +  D    +    +  +   +L + L D 
Sbjct: 21  AIDTET--------MGLHPHRDRLCVVQL--SNGDGSADVVQIPQGHSDAPNLKKLLGDP 70

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEH 121
           TV+ + H + F+        G+    +   CT + +R     +    LK+    L  +  
Sbjct: 71  TVVKIFHFARFDLAALYNAFGV--MPQPVYCTKIASRLTRTYTDRHGLKDLVREL-LNVD 127

Query: 122 LTKMEEGKAL 131
           L+K ++    
Sbjct: 128 LSKQQQSSDW 137


>gi|320527839|ref|ZP_08029007.1| conserved domain protein [Solobacterium moorei F0204]
 gi|320131776|gb|EFW24338.1| conserved domain protein [Solobacterium moorei F0204]
          Length = 538

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 97/289 (33%), Gaps = 29/289 (10%)

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF-CKGSIDSPPYDCTRANHVQAWQLFG 160
           +  L S +    L L   +    ++           + +I + P   +       +  F 
Sbjct: 233 SLDLESMVSQEILKLKREKSQLTIKLNSYQSRLLRTQNNIKNKPVKISAELEQFVYY-FP 291

Query: 161 EYCKRDVEATRELFKRL-----IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           ++    V    +  K +       L   E++L    + IN++   ID ++  KL    A 
Sbjct: 292 DFNVEQVNKVEDFHKNINKILKSELVAVEKELKAKIEEINNQIIEIDKEIEQKLSIKDAP 351

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS-EGTLKSILSHSNITQLA 274
           +            D ++    Q   L        G        EGT+    ++ ++++L 
Sbjct: 352 KLA---------VDEVVDLVAQIKQLN----DENGYYTKKKQLEGTISQ--ANDDLSELK 396

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS---RTGRWSGCVFQPQNLP 331
           +  +           +K+  L++ +  DGR   TL  +G+     T   +G      NL 
Sbjct: 397 EKALDEICNEIN---VKMYELNKEIYVDGRRAPTLNIHGSKYSFNTAGDTGTGTAFANLI 453

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
             + S   LT+     +    + +   +A + + S    S  +  V  D
Sbjct: 454 SFDLSLLELTRLPAIAHDLPLLKNIENVAMENIISIYSRSEKQIFVAID 502


>gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
          Length = 203

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
                +G+    E+  + +   +  D    +      +     L   + D  ++ + H +
Sbjct: 22  VDTETMGLHP--ERDQLCVVQLSAGDGNAHIVQLDRGTYNAPRLRALMADPAILKIFHFA 79

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKA 130
            F+  + ++ LG+        CT + ++     +    LK+    L  +  ++K ++   
Sbjct: 80  RFDVAMLQRYLGVVTAP--VYCTKIASKLVRTYTDRHGLKDLAREL-VNIDMSKQQQSSD 136

Query: 131 L 131
            
Sbjct: 137 W 137


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 50/152 (32%), Gaps = 10/152 (6%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI--CT 96
           V+L    E   +  +L   L     + VAHN  F+        + LG DIP       CT
Sbjct: 63  VELIHAPEFEGIARELRDLL--AGRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCT 120

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA-LIARFCKGSIDSPPYDCTRANHVQA 155
             L+R+     SL + C                A   A      +D+ P        + A
Sbjct: 121 MKLSRSLIGVGSLADCCREFGIDNEDAHSALSDAHATALLLGRLMDADPEWSGWRRRLDA 180

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
            +  GE+        R   + L   S  E +L
Sbjct: 181 AEEAGEHWPELTSFERR--EWLPRRSHVENNL 210


>gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
 gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
          Length = 206

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +   ++      +L++ L D  V+ + H   F+  +   T G+    +   C
Sbjct: 44  SSGDGTADVIQISKGQKSAPNLVKLLGDNAVIKIFHFGRFDLAILAHTFGV--MPEAIFC 101

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           T   S L RT      LK  C  L  + +++K ++    
Sbjct: 102 TKIASKLTRTYTDRHGLKEICNEL-LNVNISKQQQSSDW 139


>gi|258622057|ref|ZP_05717084.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258585671|gb|EEW10393.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 353

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 11/168 (6%)

Query: 257 SEGTLKSILSHSNITQLAKDLILNR--LASSGSAILKLN--TLSEAVSSDGRLRGTLQFY 312
            E  ++ +         A+  + NR     S    ++L+   L   +    + + T    
Sbjct: 22  PERVVQRVKQLGCDVPEARVTLFNRYHRHLSRRENIRLDMEVLERKILKHSKKKSTRSQA 81

Query: 313 GASRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
            + +  R+   + +  N    R E S          +     +       SD +      
Sbjct: 82  ISKQYQRFRASLIRDNNGFWHRPEVSPFHTITGRDQVLGHSLVQLSKNSWSDILS----P 137

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
             G    + D    E  + A ++G    +  +  G D+Y    A   N
Sbjct: 138 PTGSVYALLDYEQQEPMIAASLSGCQSLMGMYERG-DVYTQLAADITN 184


>gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
 gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 193

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           LWD   ++  P        D   + VAHN++F+  + K   +  G D     + CT  LA
Sbjct: 74  LWDWMCENITPE-------DPDAVLVAHNAVFDTGVVKAANRACGRDPRPWDYACTLRLA 126

Query: 101 RT 102
           R 
Sbjct: 127 RA 128


>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLAR 101
           D      +P ++   L D   T + VAHN+ F+    +   G    S   R  CT  LAR
Sbjct: 65  DMLADQPLPEEVYPALGDFIGTALLVAHNARFDLAFLRHEFGRLGLSLNSRSACTLELAR 124

Query: 102 T 102
            
Sbjct: 125 R 125


>gi|323488076|ref|ZP_08093328.1| hypothetical protein GPDM_02000 [Planococcus donghaensis MPA1U2]
 gi|323398228|gb|EGA91022.1| hypothetical protein GPDM_02000 [Planococcus donghaensis MPA1U2]
          Length = 432

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 59/172 (34%), Gaps = 12/172 (6%)

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   ++ +    +++ E  +  + + IN R   ID   +    E    +  +  E +   
Sbjct: 67  EIMEKITELTNKINEMEYYIVEVQEEINQRKIEIDE--LQNSIEAFENKIAERTELLKDR 124

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-------MSEGTLKSILSHSNITQLA---KDL 277
              I  S      + + L   + +D +D       + E   + +L     T+L    K +
Sbjct: 125 VRAIQMSGGSIDYIDVLLSANSFVDFIDRFSAVNTLIEADREIMLQQVEDTKLLAKQKAI 184

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +  +L         L  L+ ++++  +          +   R +    + +N
Sbjct: 185 VETKLKEQKERQSALQELNNSIATQKKEHAEFVVELTAEQQRLAKAKSELEN 236


>gi|299755225|ref|XP_001828510.2| gamma DNA-directed DNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298411126|gb|EAU93343.2| gamma DNA-directed DNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1341

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 35/168 (20%)

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED------------WKIKAFANGEDI 408
               +++ + A  G  +V AD+   E  + + +                      A G D+
Sbjct: 911  GSELKAMVRAPEGYAIVGADVDSEELWISSCMGDAQFGLHGATAIGWMTLEGTKAAGTDL 970

Query: 409  YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQNVK 467
            +  T  K             R   KV   +  Y  G +     +       L + +Q + 
Sbjct: 971  HSKTA-KILGIS--------RDQAKVFNYSRIYGAGMRHAILLLLQGSSAMLPEAAQKLA 1021

Query: 468  STST-------------FEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                             FE          ++ ++  E A+ DK    A
Sbjct: 1022 ENLYASTKGKNTHRTDIFERKFWFGGSESYLFNKLEEIALSDKPQTPA 1069


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 20/139 (14%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLW----DRTEQSAM 53
           +D+ET        +    V+        E    T+     D  PV +     D  E + +
Sbjct: 25  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTMVNPERDPGPVWIHGLTSDVLEGAPL 84

Query: 54  PSDLLQ--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGLPSS 108
             D+      R    + VAHN++F+  +  +         P ++ +CT  L++  GLP  
Sbjct: 85  FEDIAAEFASRLADRVLVAHNAVFDWSMIAREYARAKSQAPVRQRLCTIALSKELGLPLP 144

Query: 109 ---LKNACLALNFSEHLTK 124
              L++        +    
Sbjct: 145 NHKLESLAAHFGVVQQRAH 163


>gi|73959238|ref|XP_547141.2| PREDICTED: similar to periplakin [Canis familiaris]
          Length = 1778

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 29/219 (13%)

Query: 104  GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             +          L   + +    E   L  ++      +      +   ++      E  
Sbjct: 1129 AMAEGKITVKEVLKLEKDVATEREVGDLKRQYEDEEAKARANQREKTELLRKIWALEEEN 1188

Query: 164  KR-------------DVEATRELFKRLIPLSDGERDLWLLDQTIN----------DRGYR 200
             R             D EA RE+    + L + ER     ++ +            RG +
Sbjct: 1189 ARVLVQEKVREIVRPDPEAEREVANLRLELVEQERKYRGAEEQLKSYQSELEALRRRGPQ 1248

Query: 201  IDLDLVLKLQ------ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            +++  V K          + +E ++L E+IV  T  I R   + Y L+  +  +      
Sbjct: 1249 VEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDVEIYQLKQEIQSLKDTKPQ 1308

Query: 255  DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
              ++  ++ IL      Q  +++   R   S     +++
Sbjct: 1309 VQTKEVVQEILQFQEDPQTKEEVQSLRARLSEEQKKQVD 1347


>gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
 gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
          Length = 202

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSEHLTK-- 124
           AHN+ F+R    +    DI   +W CT             S L     +   +E  T   
Sbjct: 100 AHNASFDRSFLYRMYPEDINELKWYCTMRSVPWKEYGFTDSKLLTLLQSHQIAESQTHRA 159

Query: 125 MEEGKALIARFCK--GSIDSPPYDCTRANHVQAWQ 157
           M++   L+    K   + D    D      ++ +Q
Sbjct: 160 MDDITYLLELLKKTNPAGDFYMRDVLAKGPMRKYQ 194


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 20/133 (15%)

Query: 6   IDIETRS---PQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +D+ET        +    V+        E    TL     D  PV +   T      + L
Sbjct: 23  VDVETTGLARDDRIVSAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVLAGAPL 82

Query: 58  LQYLRDE------TVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLPSS 108
            Q + DE        + VAHN++F+  +  +       +       CT  LA+   LP  
Sbjct: 83  FQDIADEFSQRLDGRVLVAHNAMFDWSMIAREYARARRTAPTRQRLCTIALAKELRLPLP 142

Query: 109 ---LKNACLALNF 118
              L++       
Sbjct: 143 NHKLESLAAHFGV 155


>gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
 gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
          Length = 207

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 7/156 (4%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            D    +    +      ++   L D +   + H + F+        G    ++   CT 
Sbjct: 44  GDGTADVVQIAKGQTEAPNISALLADASKTKIFHYARFDVAALYHAFGA--MTEGIFCTK 101

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           + +R     +    LK+    L     L+K ++           +            H  
Sbjct: 102 IASRLTRTYTDRHGLKDLAREL-VGVDLSKQQQSSDWAVETLSPAQLDYAASDVLYLHDI 160

Query: 155 AWQLFGEYCKRD-VEATRELFKRLIPLSDGERDLWL 189
              L+    + D ++  RE F+ L      +   W 
Sbjct: 161 MGALYKRLEREDRMDLARECFRFLPMRVRLDLAGWE 196


>gi|297545587|ref|YP_003677889.1| tyrosyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843362|gb|ADH61878.1| tyrosyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 406

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 16/193 (8%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K    A   +  L    EGK    +  K    +   D  + +  + +Q +      DVE 
Sbjct: 207 KEGKQAYGMTFTLLTTSEGK----KMGKTEKGAVWLDPNKTSPYEFYQYWRNIADADVEK 262

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L    +P+ +  R   L D+ IN+    +  ++   +      ++ +   + +    
Sbjct: 263 ALALL-TFLPMDEVRRLGALKDKEINEAKKILAYEVTKLVHGEEEAQKSQKAAEALFEGG 321

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G + +          L            +  L  +     I   ++   L +        
Sbjct: 322 GDLNNVPSVTVPSDVL-----------GKKVLDVLFEAKIIPSKSEGRRLIQQGGLYINN 370

Query: 290 LKLNTLSEAVSSD 302
            K+ ++ E +  D
Sbjct: 371 EKVESIDEYIKDD 383


>gi|257074452|ref|YP_003162850.1| transposase Tn3 family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257074514|ref|YP_003162911.1| transposase Tn3 family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257091642|ref|YP_003165285.1| hypothetical protein CAP2UW1_4715 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048651|gb|ACV37838.1| hypothetical protein CAP2UW1_4715 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048673|gb|ACV37859.1| transposase Tn3 family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048735|gb|ACV37920.1| transposase Tn3 family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 988

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC-VFQPQNLPRQERSEEILTQTIQALNRG 350
              LSE +S +G              G+ +     +   +    R      + ++A    
Sbjct: 178 YEALSEPLS-NGHRHRLDDLLKRRDNGKMTWLAWLRQSPVKPNSRHMLEHIERLKAWQAL 236

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR----VLAWIAGEDWKIKAFANGE 406
           +  +    L     R   IA  G ++  ADLA  E R     L  +A  +          
Sbjct: 237 DLPSGIERLVHQN-RLLKIAREGGQMTPADLAKFEPRRRYATLVALA-IEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  ++ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWDAF 360


>gi|330870496|gb|EGH05205.1| Tn3 family transposase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 983

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLR--GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             TLSE +S+  R    G L+     +T   +    +   +    R      + ++A   
Sbjct: 178 YETLSEPLSNTHRRCLDGLLRRRDKGQTTWLA--WLRQSPVKPNSRHMLEHIERLKAWQA 235

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGE 406
            +  A    L     R   IA  G ++  ADL+  E   R    +A   +          
Sbjct: 236 LDLPAGIERLVHQN-RLLKIAREGGQMTPADLSKFELQRRYATLVALAIEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  K+ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQKQFQASGKAINAKVRLYGRIGQALLEAKQNGCDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWEAF 360


>gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366]
 gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366]
          Length = 456

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS----S 108
           ++   L D+  + VAHN  F+    K  L   G D+  K+ +CT  L+R    P     S
Sbjct: 74  EIYAMLHDK--IFVAHNVNFDFSFIKHHLSLSGYDLRCKK-LCTVRLSRKL-FPGYSSYS 129

Query: 109 LKNACLALNFSEH 121
           L   C ALN + H
Sbjct: 130 LGKLCNALNIAIH 142


>gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
 gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
          Length = 204

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 26/174 (14%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  +    L       + P+ L + + D  V+ + H + F+    +   G+        C
Sbjct: 42  SAGNGDAHLVKFDGDYSAPN-LRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPC--YC 98

Query: 96  TSV---LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T +   L RT      LK+ C  L     + K ++              S          
Sbjct: 99  TKIASRLVRTYTNHHGLKDLCYEL-LGVKINKAQQSSDWGREVLTAEQLS---------- 147

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    Y   DV     + K+L  + + E    L +        R +LDL+
Sbjct: 148 ---------YAAADVIYLHAIKKKLDMMLEREEKQELAEACFKFVPVRAELDLL 192


>gi|289579444|ref|YP_003478071.1| tyrosyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289529157|gb|ADD03509.1| tyrosyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 406

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 16/193 (8%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K    A   +  L    EGK    +  K    +   D  + +  + +Q +      DVE 
Sbjct: 207 KEGKQAYGMTFTLLTTSEGK----KMGKTEKGAVWLDPNKTSPYEFYQYWRNIADADVEK 262

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L    +P+ +  R   L D+ IN+    +  ++   +      ++ +   + +    
Sbjct: 263 ALALL-TFLPMDEVRRLGALKDKEINEAKKILAYEVTKLVHGEEEAQKSQKAAEALFEGG 321

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G + +          L            +  L  +     I   ++   L +        
Sbjct: 322 GDLNNVPSVTVPSDVL-----------GKKVLDVLFEAKIIPSKSEGRRLIQQGGLYINN 370

Query: 290 LKLNTLSEAVSSD 302
            K+ ++ E +  D
Sbjct: 371 EKVESIDEYIKDD 383


>gi|289629047|ref|ZP_06462001.1| Tn3 family transposase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650219|ref|ZP_06481562.1| Tn3 family transposase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 989

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLR--GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             TLSE +S+  R    G L+     +T   +    +   +    R      + ++A   
Sbjct: 178 YETLSEPLSNTHRRCLDGLLRRRDKGQTTWLA--WLRQSPVKPNSRHMLEHIERLKAWQA 235

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGE 406
            +  A    L     R   IA  G ++  ADL+  E   R    +A   +          
Sbjct: 236 LDLPAGIERLVHQN-RLLKIAREGGQMTPADLSKFELQRRYATLVALAIEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  K+ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQKQFQASGKAINAKVRLYGRIGQALLEAKQNGCDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWEAF 360


>gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 17/142 (11%)

Query: 36  AWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           +  D    +      +   S  +L++ L D  V+ + H   F+  +   T G+       
Sbjct: 42  SNGDGTADVVQIPAGATAESAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAP--V 99

Query: 94  ICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            CT + +R     +    LK+    L     L+K ++     A   + +     Y  +  
Sbjct: 100 FCTKIASRLTRTYTDRHGLKDLVREL-LGVDLSKQQQSSDWAA--SELTDAQLAYAASDV 156

Query: 151 NHVQAWQLFGEYCKRDVEATRE 172
            H+         CK  +EA   
Sbjct: 157 LHL-------HACKEKLEAMLA 171


>gi|115954844|ref|XP_001197461.1| PREDICTED: similar to Structural maintenance of chromosomes 5
           [Strongylocentrotus purpuratus]
          Length = 1032

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 56/170 (32%), Gaps = 8/170 (4%)

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL---DQTINDRGYRIDLD 204
            +++H++  +   E  +RDV   +E  K L  +   E+    +   D+ +     +++  
Sbjct: 178 DKSDHLEKLKQQNERVERDVRRFKERQKTLETIETLEKKKVWMQYDDKRVLFNKVKMEKK 237

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEG 259
              +    + +    L+ ++        +  +Q   L   +     +     D +   +G
Sbjct: 238 KAEEALAQMKRRADPLERELQAAVKTSKQLDQQKKNLSAGITEQEKLIKTKRDELGEQKG 297

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            +  +       +  +   L  +      +       + +  D  +R  L
Sbjct: 298 LIAELHEELRDKRTQEQKRLKAIHDGKEQVAGYERELDQLEPDEDIRPQL 347


>gi|115923268|ref|XP_786593.2| PREDICTED: similar to Structural maintenance of chromosomes 5
           [Strongylocentrotus purpuratus]
          Length = 1069

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 56/170 (32%), Gaps = 8/170 (4%)

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL---DQTINDRGYRIDLD 204
            +++H++  +   E  +RDV   +E  K L  +   E+    +   D+ +     +++  
Sbjct: 215 DKSDHLEKLKQQNERVERDVRRFKERQKTLETIETLEKKKVWMQYDDKRVLFNKVKMEKK 274

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEG 259
              +    + +    L+ ++        +  +Q   L   +     +     D +   +G
Sbjct: 275 KAEEALAQMKRRADPLERELQAAVKTSKQLDQQKKNLSAGITEQEKLIKTKRDELGEQKG 334

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            +  +       +  +   L  +      +       + +  D  +R  L
Sbjct: 335 LIAELHEELRDKRTQEQKRLKAIHDGKEQVAGYERELDQLEPDEDIRPQL 384


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 37  WDDEPVKLWDRT----EQSAMPSDLLQYLRD--ETVMCVAHNSLFERI---LFKKTLGID 87
            D  PV++   T      +    D+   + +     + VAHN+ F+     +     G+ 
Sbjct: 74  VDPGPVEVHGLTTADLAGAPPFRDVAATIAERLAGRVFVAHNAAFDWAFVAVESDRAGVR 133

Query: 88  IPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKM 125
           +    W+CT   A+   L     SL          +     
Sbjct: 134 LEVLDWLCTMRFAKALALDVPDKSLATIAAYYAVEQLKAHD 174


>gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 170

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS 97
           P  + D  + S +  ++  YL +   + VAHN+ F+  + +  L    +D P   ++CT 
Sbjct: 33  PEDVRDEPDFSEIWREISTYLENN--LVVAHNASFDISVLRHVLDLYDLDYPQFDYLCTK 90

Query: 98  VLA 100
            LA
Sbjct: 91  KLA 93


>gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
          Length = 208

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT---SV 98
           V L   +      S L + L    V+ + H + F+  + +  LGI +     +CT   S 
Sbjct: 54  VSLVRLSAGLTQASQLQKVLEAPAVIKLFHYARFDVAMLRHHLGIRVQP--IVCTKVASK 111

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           LART      LK+  L       L K  +    
Sbjct: 112 LARTYSPRHGLKDLVLET-VGVELDKSAQSSDW 143


>gi|328851794|gb|EGG00945.1| hypothetical protein MELLADRAFT_39474 [Melampsora larici-populina
           98AG31]
          Length = 1150

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 21/134 (15%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWI----------AGEDWK-IKAFAN-GEDI 408
              ++S + A  G  +V AD+   E  + + +              W  ++   + G D+
Sbjct: 673 GTELKSMVRAPPGYAIVGADVDSEELWISSVMGDAQFGMHGATAIGWMTLEGTKSAGTDL 732

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T                R   KV   +  Y  G      +         +   N  +
Sbjct: 733 HSKTAT-ILGIS--------RNEAKVFNYSRIYGAGVTHAIQLLMKADPKTSKEEANQLA 783

Query: 469 TSTFEDWEQAESHH 482
              +   +  +++ 
Sbjct: 784 KKLYRSTKGLKNYR 797


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +           +L + L D  V  + H + F+  + +   G+        C
Sbjct: 42  SNGDGTADVVQIPAGHTDAPNLKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQP--IYC 99

Query: 96  TSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T + ++     +    LK+    L     ++K ++     A   K S     Y  +   H
Sbjct: 100 TKIASKLVRTYTDRHGLKDLVREL-LGVEISKQQQSSDWGAE--KLSEAQLTYAASDVLH 156

Query: 153 VQAWQLF 159
           + A +  
Sbjct: 157 LHALREK 163


>gi|222838303|gb|EEE76668.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L+E +S   R R  L      R    +  +   +  P +  S  +L + I+ L   +
Sbjct: 286 YDALAEPLSDAHRRR--LDDLLKRRDNGKTTWLAWLRQSPVKPNSRHML-EHIERLKAWQ 342

Query: 352 TIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGE 406
            +  P G+       R   IA  G ++  ADLA  EA  R    +A   +          
Sbjct: 343 ALDLPSGIERSVHQNRLLKIAREGGQMTPADLAKFEAQRRYATLVALAIEGMATVTDEII 402

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  ++ +A GK +   +   G        A   G D     + V
Sbjct: 403 DLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEAKQAGRDPFAAIEAV 462

Query: 467 KSTSTF 472
            S   F
Sbjct: 463 MSWDAF 468


>gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1]
 gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1]
          Length = 206

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +    +      +L++ L D  +  + H   F+  +   T G+        C
Sbjct: 44  SSGDGTADVIQIAKGQKSAPNLVRLLSDRDITKIFHFGRFDLAILAHTFGV--MPDVVFC 101

Query: 96  T---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           T   S L RT      LK  C  L  + +++K ++    
Sbjct: 102 TKIASKLTRTYTDRHGLKEICGEL-LNVNISKQQQSSDW 139


>gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 125

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + D++ + M  A            ++LTVHDE+V E P      +  L    MT  
Sbjct: 41  IQGSAADLIKKAMLGAHARMAAQRLHARMLLTVHDELVFEAPPAEVEPLARLVREEMTSA 100

Query: 655 PSWAKGLPLKAE 666
                 +PLK +
Sbjct: 101 IK--LDVPLKVD 110


>gi|126310331|ref|XP_001367287.1| PREDICTED: similar to TGF beta-activated kinase splice isoform 1
           [Monodelphis domestica]
          Length = 606

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI---QALNRGETIADPLGLASDCVRSC 367
           F   + T   +      + +P    + + L   +   QA  + ++    LG +       
Sbjct: 319 FMDITSTNTSNKSDTNMEQIPATNDTIKRLESKLLKNQAKQQSDSGRLSLGASRGSSVES 378

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           +  S+  K + AD++ IEAR+ A          A +  +  +  T +  F 
Sbjct: 379 LPPSSEGKRMSADMSEIEARIAA--------TTACSKPKRGHRKTAS--FG 419


>gi|126310335|ref|XP_001367381.1| PREDICTED: similar to TGF beta-activated kinase splice isoform 3
           [Monodelphis domestica]
          Length = 518

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI---QALNRGETIADPLGLASDCVRSC 367
           F   + T   +      + +P    + + L   +   QA  + ++    LG +       
Sbjct: 319 FMDITSTNTSNKSDTNMEQIPATNDTIKRLESKLLKNQAKQQSDSGRLSLGASRGSSVES 378

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           +  S+  K + AD++ IEAR+ A          A +  +  +  T +  F 
Sbjct: 379 LPPSSEGKRMSADMSEIEARIAA--------TTACSKPKRGHRKTAS--FG 419


>gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 23/156 (14%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
             V L   +        L + L D  +  + H + F+  + +  LGI        CT + 
Sbjct: 53  GEVVLLRLSRGVKQAPHLARLLTDPNIEKIFHYARFDLAMLRYHLGIQAWP--VFCTKI- 109

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY--DCTRANHVQAWQ 157
                          A   +   T     K ++   C   ++      D      +   Q
Sbjct: 110 ---------------ASKLARTYTSKHSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQ 154

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
           L  EY   DV     +  +L  +   E   W L Q 
Sbjct: 155 L--EYAANDVRYLIPVRHKLAQMLQREER-WELAQR 187


>gi|67526715|ref|XP_661419.1| hypothetical protein AN3815.2 [Aspergillus nidulans FGSC A4]
 gi|40740833|gb|EAA60023.1| hypothetical protein AN3815.2 [Aspergillus nidulans FGSC A4]
 gi|259481628|tpe|CBF75324.1| TPA: polarisome component (SpaA) (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 906

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 18/185 (9%)

Query: 148 TRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           T  +  +  +L  ++   D+E   ++L   L      E+     +      G+ +++  +
Sbjct: 466 TSRHEGEDAELQAQFA--DLEIRHQKLQAEL-----QEQRQVTEEVRREAAGFLMEMREL 518

Query: 207 LKLQELIAQERKKLDEDIVKLTDGII----RSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            +      +  ++L E++ +L D ++    R ++    LR       GI  +     T+ 
Sbjct: 519 SEQSHSRLEHEERLSEEVHRLEDELVTWKGRYAKAKAQLRHLRASSAGIPELRSDVNTVA 578

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
                 +   L KD+ + +   S      ++ L     SD       Q      + R   
Sbjct: 579 KDNEFLHDDGLIKDVHVTKFQLS------IDELLRVARSDDHRHVMQQINAVVISVRHLL 632

Query: 323 CVFQP 327
              Q 
Sbjct: 633 QDVQL 637


>gi|197098462|ref|NP_001124617.1| mitogen-activated protein kinase kinase kinase 7 [Pongo abelii]
 gi|75070999|sp|Q5RFL3|M3K7_PONAB RecName: Full=Mitogen-activated protein kinase kinase kinase 7
 gi|55725155|emb|CAH89444.1| hypothetical protein [Pongo abelii]
          Length = 606

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 18/129 (13%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI---QALNRGETIADPLGLA-SDCVRS 366
           F   + T   +      + +P    + + L   +   QA  + E+    LG +    V S
Sbjct: 319 FMDIASTNTSNKSDTNMEQVPATNDTIKRLESKLLKNQAKQQSESGRLSLGASRGSSVES 378

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA--KAFNTPIDKV 424
              AS GK+ + AD++ IEAR+ A          A++  +  +  T +     + P   +
Sbjct: 379 LPPASEGKR-MSADMSEIEARIAA--------TTAYSKPKRGHRKTASFGNILDVPEIVI 429

Query: 425 SKE---QRA 430
           S     +R 
Sbjct: 430 SGNGQPRRR 438


>gi|239625212|ref|ZP_04668243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519442|gb|EEQ59308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 507

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 10/122 (8%)

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-RAI 431
           G  LV      I     A  +     I+A  +GE +Y             KV+  + RA 
Sbjct: 204 GMCLVNCPFGAI-----ADKSQIFQVIRAIQSGERVYAAVAPAFVGQFGPKVTPGKLRAA 258

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +  A  ++                   F Q V     F       +  +  +  +PE
Sbjct: 259 MKALGFADVFEVAVGADLCATQEA----IDFMQEVPEKLPFMATSCCPAWSMMAKKLFPE 314

Query: 492 FA 493
            A
Sbjct: 315 QA 316


>gi|260772220|ref|ZP_05881136.1| [Protein-PII] uridylyltransferase [Vibrio metschnikovii CIP 69.14]
 gi|260611359|gb|EEX36562.1| [Protein-PII] uridylyltransferase [Vibrio metschnikovii CIP 69.14]
          Length = 881

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 93/277 (33%), Gaps = 34/277 (12%)

Query: 159 FGEYCKRDVEATR-ELFKRLIPLSDGERDLWLL-DQTINDRGYRIDLDLVLKLQELIAQE 216
           F     R VE    E ++ L  +S+  + L  L DQ I +RG  I  ++         Q 
Sbjct: 284 FTGEGNRAVEKMMKEFYRTLRRVSELNKMLLKLFDQAILNRGEEIKAEI----INHDFQR 339

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAK 275
           R  L E         +  +R    L M+L +     +  ++  T++ +  +   + +   
Sbjct: 340 RGSLIEARK----PALFQARPETILDMFLLMANDSSIDGVAPSTMRQLRTARRRLNKFLH 395

Query: 276 DLILNR------------LASSGSAILKLNTLSEAVSSDGRLRGTLQF-----YGASRTG 318
            +   R            L  +   + KL  L+  +    ++ G +QF     Y      
Sbjct: 396 TIPAAREKFLALTRHPNALHKAFGQMHKLGVLAAYLPQWSQIVGQMQFDLFHVYTVDEHS 455

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-----TIADPLGLASDCVRSCIIASNG 373
                     N P+  +   I  +    + + E      I   +        S I AS  
Sbjct: 456 IRLLKHIHLFNDPKNHQRHPICCEIFPKIQKKELLILAAIFHDIAKGRGGDHSEIGASEA 515

Query: 374 KKL-VVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
               +   L+  EA+++AW+      +   A   DIY
Sbjct: 516 YDFCIEHGLSKPEAKLVAWLVQNHLLMSVTAQRRDIY 552


>gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois]
 gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois]
          Length = 216

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWI 94
           +  D    L            L   + D  V+ + H + F+  + +  LG+         
Sbjct: 53  STGDGTAHLVRFNGTDYSAPRLKSLIVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTK 112

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
             S L RT     SLK  C  L     L K ++    
Sbjct: 113 IASRLVRTYTDHHSLKELCSDL-LGVRLNKGKQSSDW 148


>gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 203

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           +  D    L    + +  PS +L  L  D  V  + H + F+       +G         
Sbjct: 42  SSGDGNAHLVQIAQPAK-PSPVLAALLADPAVTKLFHFARFDLAALIHYIGA--VEGDIY 98

Query: 95  CT---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           CT   S LART      LK  C  L     ++K ++    
Sbjct: 99  CTKIASKLARTYTDRHGLKELCREL-LQIDISKQQQSSDW 137


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L     + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|91775848|ref|YP_545604.1| transposase Tn3 [Methylobacillus flagellatus KT]
 gi|91709835|gb|ABE49763.1| transposase Tn3 [Methylobacillus flagellatus KT]
          Length = 988

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 93/288 (32%), Gaps = 7/288 (2%)

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           L Q I  R  R+D     +  E     R+ L E    L       +    A+     L  
Sbjct: 75  LLQWI-GRQLRLDPVCWPQYAEREETRREHLLELRAYLGMEPFGLAHYRQAVHATTELAL 133

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRG 307
             D   +   ++   L H +I     D+I    A + +   +   + L+E +S DG  R 
Sbjct: 134 QTDKGIVLAASVLDALRHRHIIIPTLDVIERVCAEAITRANRRIYDALTEPLS-DGHRRR 192

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                     G+ +   +  Q+  +      +         +   +   +       R  
Sbjct: 193 LDDLLKRRDNGQTTWLAWLRQSPAKPNSRHMLEHIKRLKAWQALDLPSGIERLVHQNRLL 252

Query: 368 IIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            IA  G ++  ADLA  EA  R    +A   +          D++     K FN   +K 
Sbjct: 253 KIAREGGQMTPADLAKFEAQRRYATLVALAIEGMATVTDEIIDLHDRILGKLFNAAKNKH 312

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            ++ +A GK +   +   G        A   G D     + V S   F
Sbjct: 313 QQQFQASGKAINAKVRLFGRIGQALIEAKQSGRDPFAAIEAVMSWDAF 360


>gi|149755324|ref|XP_001490532.1| PREDICTED: similar to MAD1-like 1 protein [Equus caballus]
          Length = 717

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 87/270 (32%), Gaps = 10/270 (3%)

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 K +E    I         S      +   ++  +      ++D    + +   L
Sbjct: 194 LDLQHKKWQEANQKIQEL----QASQEVRADQEQRIKDLEQKLSLQEQDAVIVKNMKSEL 249

Query: 178 IPLSDGERDLWLL-DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           + L   ER+L  L ++ ++ R  R    L+ +  E + ++  + ++    L D  +   R
Sbjct: 250 VRLPKMERELKQLREENVHLREMRETNGLLREELEGLRRKLGRQEKMQENLVDLELEKER 309

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               L+ +  L        +S  T + +       Q  +  + +R +S   +   L  + 
Sbjct: 310 LLAKLQSWERLDQ---TTGLSIRTPEDLSRFIVELQQRELALKDRNSSITCSARGLEKVR 366

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +  +  +R         R  R +      +   R     +        L   ++   P
Sbjct: 367 QQLQEE--VRQVSSQLLEERKRRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTP 424

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEA 386
              +    R    A +  + V A  + +EA
Sbjct: 425 AEYSPQLTRRMREAEDMVQKVHAHSSEMEA 454


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +  +   +P D L  L     + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|60686977|gb|AAX35685.1| transposase-like protein [Acidithiobacillus caldus]
          Length = 988

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 95/277 (34%), Gaps = 31/277 (11%)

Query: 214 AQERKKLDEDIVKLTDG---IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
            Q R++   ++  +       +   RQ   L   L        +   +G +   L+ + I
Sbjct: 97  EQTRREHLVELQTVFGFQPFTMSHYRQAVQLLTEL-------AMQTDKGVV---LASALI 146

Query: 271 TQLAKD-LILNRLASSGSAILK---------LNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L +  +IL  L +   A  +            L+E +S   R R  L      R    
Sbjct: 147 EHLRRQSVILPSLNAVERASAEAITRANRRIYEALAEPLSDAHRRR--LDDLLKRRDNGK 204

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV--RSCIIASNGKKLVV 378
           +  +   +  P +  S  +L + I+ L   + +  P G+       R   IA  G ++  
Sbjct: 205 TTWLAWLRQSPVKPNSRHML-EHIERLKAWQALDLPSGIERSVHQNRLLKIAREGGQMTP 263

Query: 379 ADLAGIEA--RVLAWIA-GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ADLA  EA  R    +A   +          D++     K FN   +K  ++ +A GK +
Sbjct: 264 ADLAKFEAQRRYATLVALAIEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAI 323

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
              +   G        A   G D     + V S   F
Sbjct: 324 NAKVRLFGRIGQALIEAKQAGRDPFAAIEAVMSWDAF 360


>gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
 gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
          Length = 223

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 19/147 (12%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            D    +           +L     D     + H + F+  + +  LGI +    W CT 
Sbjct: 63  GDGSADVVQIARGQTEAPNLAALFTDAAKPKIFHFARFDVAVLRHYLGIHVTPV-W-CTK 120

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
           +            +  +      H  K    + L     K    S     T ++   A+ 
Sbjct: 121 I-----------ASKLVRTYTDRHGLKDITRELLGVELSKQQQSSDWAAETLSDAQLAY- 168

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE 184
                   DV    +L  +L  + + E
Sbjct: 169 -----AASDVLHLHDLKAKLEMMLERE 190


>gi|24376247|ref|NP_720355.1| ISSod9, transposase [Shewanella oneidensis MR-1]
 gi|24376373|ref|NP_720481.1| ISSod9, transposase [Shewanella oneidensis MR-1]
 gi|24344713|gb|AAN52955.1| transposase, TnpA_TnSon_1 [Shewanella oneidensis MR-1]
 gi|24345287|gb|AAN53081.1| TnSon_2 transposase, TnpA_TnSon_2 [Shewanella oneidensis MR-1]
          Length = 988

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 12/197 (6%)

Query: 283 ASSGSAILKLNTLSEAVSSDGRLR--GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           A + +     +TL+E +S   R R    L+    ++T   +    +   +    R    +
Sbjct: 169 ALTRANRRIYDTLTEPLSGSHRHRLDDLLKLRDNNKTTTLA--WLRLSPVKPNSR---HM 223

Query: 341 TQTIQALNRGETIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA--RVLAWIA-GE 395
            + I+ L   + +  P+G+       R   IA  G ++  ADLA  E   R    +A   
Sbjct: 224 LEHIERLKVWQALDLPIGVDRLIHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALAI 283

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +          D++     K FN    +  K+ +A GK +   +   G        A   
Sbjct: 284 EGMATVTDEIIDLHDRIMGKLFNDAKKRHQKQFQASGKAINAKVRLFGRIGQVLIDAKQA 343

Query: 456 GLDLQQFSQNVKSTSTF 472
           G D     + V S   F
Sbjct: 344 GDDPFAAIEGVISWEAF 360


>gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 256

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLA 115
           L + + D ++  + H + F+  + +  LGI +     +CT + AR           A L 
Sbjct: 114 LKRVMADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALC 171

Query: 116 LN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            +     L+K ++     A   K    +         H   W         D E  REL 
Sbjct: 172 RDMLGVELSKQQQTSDWGALELKPEQLAYAASDVLYLHA-LWD--KMSALLDREGRRELA 228

Query: 175 KRLI 178
           +   
Sbjct: 229 QACY 232


>gi|162147898|ref|YP_001602359.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 26/156 (16%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  D    L      +  P+ L + + D ++  + H + F+  + + +LG+ +   
Sbjct: 44  LVQISAGDGSAHLVQILPGTPSPN-LARLMADPSITKLMHFARFDVAILQHSLGVTVAP- 101

Query: 92  RWICT---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
             ICT   S L RT      L   C  L     L+K ++                     
Sbjct: 102 -VICTKIASKLVRTFTERHGLAQLCREL-LGVDLSKQQQTSDW----------------- 142

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                +       Y   DV     L+ +L  L   E
Sbjct: 143 --GAPELTPEQKAYAASDVLHLHALWTKLEVLLHRE 176


>gi|68053502|gb|AAY85172.1| transposase-like protein [Leptospirillum ferriphilum]
          Length = 988

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 8/193 (4%)

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + +     + L+E +S   R R           G+ +   +  Q+  +      +  + I
Sbjct: 171 TRANWRIYDALAEPLSDVHRRR-LDDLLKRRDNGKTTWLAWLRQSPAKPNSRHML--EHI 227

Query: 345 QALNRGETIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKI 399
           + L   + +  P G+       R   IA  G ++  ADLA  EA  R    +A   +   
Sbjct: 228 ERLKAWQALDLPSGVERSVHQNRLLKIAREGGQMTPADLAKFEAQRRYATLVALAIEGMA 287

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                  D++     K FN   +K  ++ +A GK +   +   G        A   G D 
Sbjct: 288 TVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDP 347

Query: 460 QQFSQNVKSTSTF 472
               + V S   F
Sbjct: 348 FAAIEAVMSWDAF 360


>gi|52783138|sp|Q80YF0|MD1L1_CRIGR RecName: Full=Mitotic spindle assembly checkpoint protein MAD1;
           AltName: Full=Mitotic arrest deficient 1-like protein 1;
           Short=MAD1-like protein 1
 gi|29725736|gb|AAO91656.1| mitotic checkpoint protein [Cricetulus griseus]
          Length = 717

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 65/195 (33%), Gaps = 8/195 (4%)

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGS-------IDSPPYDCTRANHVQAWQLF 159
           +++              +++E   L  R C+ +         S          ++  +  
Sbjct: 172 NAMDQKVQVKRLESEKQELKEQLELQQRKCQEASQKIQELQASQEERADHEQKIKDLEQK 231

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLL-DQTINDRGYRIDLDLVLKLQELIAQERK 218
               ++D    + +   L+ L   ER+L  L ++  + R  +    L+ +  E + ++  
Sbjct: 232 LCLQEQDAAVVKNMKSELLRLPRMERELKRLREENTHLREMKETNGLLTEELEGLQRKLG 291

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           + ++    L D  +   +    L+ +  L   + +   +   L   +      +L     
Sbjct: 292 RQEKMQEALVDLELEKEKLLAKLQSWEKLDQTMGVNLRTPEDLSRFVVELQQRELTLKEK 351

Query: 279 LNRLASSGSAILKLN 293
            N + SS   + K  
Sbjct: 352 NNTITSSARGLEKAQ 366


>gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E]
 gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 380

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +D E V L D  E     S   Q L D  ++ V H    +  +F+            + T
Sbjct: 58  YDGEQVSLIDPQEIQDF-SPFKQLLADPKILKVLHACHEDLEVFQHYYQQLPAPM--LDT 114

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            ++A   G  +S+  A L  ++     ++++G +      +   +              W
Sbjct: 115 QIMANFLGFQNSMGLASLIKHY--FNLEIDKGASRTDWLARPLSNRQLAYAA----ADVW 168

Query: 157 QLFGEYCKR 165
            L   YCK 
Sbjct: 169 YLLPLYCKM 177


>gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 26/156 (16%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  D    L      +  P+ L + + D ++  + H + F+  + + +LG+ +   
Sbjct: 44  LVQISAGDGSAHLVQILPGTPSPN-LARLMADPSITKLMHFARFDVAILQHSLGVTVAP- 101

Query: 92  RWICT---SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
             ICT   S L RT      L   C  L     L+K ++                     
Sbjct: 102 -VICTKIASKLVRTFTERHGLAQLCREL-LGVDLSKQQQTSDW----------------- 142

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                +       Y   DV     L+ +L  L   E
Sbjct: 143 --GAPELTPEQKAYAASDVLHLHALWTKLEALLHRE 176


>gi|29171486|ref|NP_808670.1| Tn3 family transposase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|24266780|gb|AAN52340.1| putative transposase [Pseudomonas syringae pv. maculicola]
 gi|24266785|gb|AAN52343.1| putative transposase [Pseudomonas syringae pv. maculicola str. M6]
 gi|28855979|gb|AAO59036.1| transposase, Tn3 family [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 989

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLR--GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
              LSE +S+  R    G L+     +T   +    +   +    R      + ++A   
Sbjct: 178 YEALSEPLSNTHRRCLDGLLRRRDKGQTTWLA--WLRQSPVKPNSRHMLEHIERLKAWQA 235

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA--RVLAWIA-GEDWKIKAFANGE 406
            +  A    L     R   IA  G ++  ADL+  E   R    +A   +          
Sbjct: 236 LDLPAGIERLVHQN-RLLKIAREGGQMTPADLSKFELQRRYATLVALAIEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  K+ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQKQFQASGKAINAKVRIYGRIGQALLEAKQNGCDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWEAF 360


>gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis]
 gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 204

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 46/154 (29%), Gaps = 26/154 (16%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT-- 96
           +    L         P+ L+  L D ++  + H + F+  + +  LG+        CT  
Sbjct: 45  NGETHLVKFLGSYQAPN-LVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPC--YCTKI 101

Query: 97  -SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            S L RT      LK  C  L  +  L KM++              +             
Sbjct: 102 ASKLVRTYTDHHGLKELCYEL-LNVKLNKMQQSSDWGKETLTSEQLN------------- 147

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
                 Y   DV     L  +L  +   E    L
Sbjct: 148 ------YAASDVIYLHALKNKLDAMLQRENKQEL 175


>gi|301779433|ref|XP_002925134.1| PREDICTED: mitogen-activated protein kinase kinase kinase 7-like
           isoform 1 [Ailuropoda melanoleuca]
 gi|281345680|gb|EFB21264.1| hypothetical protein PANDA_014574 [Ailuropoda melanoleuca]
          Length = 606

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI---QALNRGETIADPLGLASDCVRSC 367
           F   + T   +      + +P    + + L   +   QA  + E+    LG +       
Sbjct: 319 FMDIASTNTSNKSDTNMEQIPATNDTIKRLESKLLKNQAKQQSESGRLSLGASRGSSVES 378

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA--KAFNTPIDKVS 425
           +  ++  K + AD++ IEAR+ A          A++  +  +  T +     + P   +S
Sbjct: 379 LPPTSEGKRMSADMSEIEARIAA--------TTAYSKPKRGHRKTASFGNILDVPEIVIS 430

Query: 426 KE---QRA 430
                +R 
Sbjct: 431 GNGQPRRR 438


>gi|298208758|ref|YP_003716937.1| MutS2 family protein [Croceibacter atlanticus HTCC2559]
 gi|83848685|gb|EAP86554.1| MutS2 family protein [Croceibacter atlanticus HTCC2559]
          Length = 722

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
           N LF+    +    + +       T  +A+ NG+P SL         +    K+E GK  
Sbjct: 474 NMLFDSRSLEPVYKLQMGEAGSSFTFEVAQKNGIPYSL--------INRSKKKVERGKI- 524

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
             RF K                 A +   +    + E   E+  ++    +  ++L+   
Sbjct: 525 --RFDKSIAKLQQQRSKLQKTTTALETKKQKAASEQEKLAEINDKVQAKLESYQELYDTH 582

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           Q +   G R+D  +  K      + +K L+ +++KL    I +S++   
Sbjct: 583 QRMIHLGTRVDT-IAEKF--FYNKNKKNLNSELMKLIQ--IENSKRQKQ 626


>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
 gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
          Length = 373

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           P+ L    +D  V+ + H++  +  +F++ LG+         T   A   GL   L    
Sbjct: 68  PAPLANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPL--FDTQKAAALVGLDFGLGYRS 125

Query: 114 LALNF-SEHLTKMEEGKALIAR 134
           + L   +E L K E     + R
Sbjct: 126 MVLELCNEDLPKGETRSDWLQR 147


>gi|307299735|ref|ZP_07579528.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914601|gb|EFN44994.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 321

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 1/158 (0%)

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            A +  +     + GK     F KG            +  +   L       DVE+ R++
Sbjct: 114 KARSLLKQFGLDDTGKRPFKAFSKGMKRKLTIAAGLIHDPEILFLDEPTTGIDVESARQI 173

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ-ERKKLDEDIVKLTDGII 232
              +  L+D    ++L    I +     D    +    ++       L ++  +      
Sbjct: 174 RSLVRELNDRGTTIFLTTHYIEEAERLCDRIGFIVGGRIVKIGTVADLMKEAQRENIVEF 233

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                   L+  L        +++  G    I S   I
Sbjct: 234 TLGSDPVDLKKQLIEEFSNVTINLRPGNTLRITSLEPI 271


>gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605]
 gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605]
          Length = 280

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR---WICTS 97
           ++L D   + VAHN+ F+R    +  G+ +       W+CT 
Sbjct: 123 EHLLDAADLLVAHNAAFDR----QWFGLGVVPATATPWLCTM 160


>gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
 gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
          Length = 297

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR---WICTS 97
           ++L D   + VAHN+ F+R    +  G+ +       W+CT 
Sbjct: 140 EHLLDAADLLVAHNAAFDR----QWFGLGVVPATATPWLCTM 177


>gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 86

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
           Q  + DI+   M        A +    +++ VHDE+V E       +V   +  LM
Sbjct: 7   QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 62


>gi|313631122|gb|EFR98661.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 36

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
            V     GLP+SL     AL  ++   K  EGKALI  
Sbjct: 1   MVHGTLLGLPASLDMMSKALRLAQE--KDNEGKALIRY 36


>gi|32815770|gb|AAP88287.1| Tn3 family transposase [Delftia acidovorans]
          Length = 989

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 25/274 (9%)

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
            Q R++   ++  L         Q + +  Y   +  +  + M       +L+ + I  L
Sbjct: 97  EQTRREHLVELQALFGF------QPFTMSHYRQAVHTLTELAMQTD-KGIVLASALIEHL 149

Query: 274 AKD-LILNRLASSGSAILK---------LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            +  +IL  L +   A  +          + L+E +S   R R  L      R    +  
Sbjct: 150 RRQSVILPALNAVERASAEAITRANRRIYDALAEPLSDAHRRR--LDDLLKRRDNGKTTW 207

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV--RSCIIASNGKKLVVADL 381
           +   +  P +  S  +L + I+ L   +T+  P G+       R   IA  G ++  ADL
Sbjct: 208 LAWLRQSPVKPNSRHML-EHIERLKAWQTLDLPSGIERLVHQNRLLKIAREGGQMTPADL 266

Query: 382 AGIEA--RVLAWIA-GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           A  E   R    +A   +          D++     K FN   +K  ++ +A GK +   
Sbjct: 267 AKFEPQRRYATLVALAIEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAK 326

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
           +   G        A   G D     + V S   F
Sbjct: 327 VRLYGRIGQALIDAKQSGRDPFAAIEAVMSWDAF 360


>gi|88014564|ref|NP_034882.2| mitotic spindle assembly checkpoint protein MAD1 [Mus musculus]
 gi|52783152|sp|Q9WTX8|MD1L1_MOUSE RecName: Full=Mitotic spindle assembly checkpoint protein MAD1;
           AltName: Full=Mitotic arrest deficient 1-like protein 1;
           Short=MAD1-like protein 1
 gi|4580769|gb|AAD24499.1|AF083812_1 mitotic checkpoint protein isoform MAD1a [Mus musculus]
 gi|14715075|gb|AAH10702.1| Mitotic arrest deficient 1-like 1 [Mus musculus]
 gi|148687179|gb|EDL19126.1| mitotic arrest deficient 1-like 1, isoform CRA_b [Mus musculus]
          Length = 717

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 90/289 (31%), Gaps = 15/289 (5%)

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIAR----FCKGSIDSPPYDCTRANHVQA---WQLF 159
           S++              +++E   L  R      +   +       RA H Q     +  
Sbjct: 172 SAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQK 231

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLL-DQTINDRGYRIDLDLVLKLQELIAQERK 218
               ++D    + +   L+ +   ER+L  L ++  + R  +    L+ +  E + ++  
Sbjct: 232 LCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLS 291

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           + ++    L D  +   +    L+ +  L   + L   +   L   +      +L     
Sbjct: 292 RQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEK 351

Query: 279 LNRLASSGSAILKL-NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            N + SS   + K+   L + V                R  R +      +   R     
Sbjct: 352 NNSITSSARGLEKVQQQLQDEVRQAN------AQLLEERKKRETHEALARRLQKRNALLT 405

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           +        L   ++       ++   +    A +  + V A  + +EA
Sbjct: 406 KERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEMEA 454


>gi|114569802|ref|YP_756482.1| ribonuclease D [Maricaulis maris MCS10]
 gi|114340264|gb|ABI65544.1| ribonuclease D [Maricaulis maris MCS10]
          Length = 386

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 15/177 (8%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  +  V +    E   +     + + DE ++ V H +  +  +F    G  
Sbjct: 37  PQLCLIQAAAGETEVIIDPLAEGIDL-EPFWELMADERIIKVFHAARQDLEIFFHQGGDA 95

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       + V A   GL  S+    L                L     KG   +     
Sbjct: 96  LIPHPMFDSQVAAMALGLGDSIAYDALVRTL------------LNRPIDKGPRFTDWSRR 143

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
             ++    + +      RD+       +RL      E     +    +   YR+D +
Sbjct: 144 PLSDAQTKYAIADVTHLRDLYPMM--VERLEKTGRTEWLAGEMKTLTSPSTYRLDPE 198


>gi|166796053|ref|NP_001107752.1| mitogen-activated protein kinase kinase kinase 7 [Sus scrofa]
 gi|166079191|gb|ABY81297.1| TGF-beta activated kinase 1b [Sus scrofa]
          Length = 606

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 15/129 (11%)

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI---QALNRGETIADPLGLASDCVRSC 367
           F   + T   +      + +P    + + L   +   QA  + E+    LG +       
Sbjct: 319 FMDIASTNTSNKSDTNMEQVPATNDTIKRLESKLLKNQAKQQSESGRLSLGASRGSSVES 378

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA--KAFNTPIDKVS 425
           +  ++  K + AD++ IEAR+ A          A++  +  +  T +     + P   +S
Sbjct: 379 LPPTSEGKRMSADMSEIEARIAA--------TTAYSKPKRGHRKTASFGNILDVPEIVIS 430

Query: 426 KE--QRAIG 432
                R   
Sbjct: 431 GNGQSRRRS 439


>gi|20149233|gb|AAM12868.1|AF494098_1 periplakin [Canis lupus familiaris]
          Length = 681

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 29/219 (13%)

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            +          L   + +    E   L  ++      +      +   ++      E  
Sbjct: 42  AMAEGKITVKEVLKLEKDVATEREVGDLKRQYEDEEAKARANQREKTELLRKIWALEEEN 101

Query: 164 KR-------------DVEATRELFKRLIPLSDGERDLWLLDQTIN----------DRGYR 200
            R             D EA RE+    + L + ER     ++ +            RG +
Sbjct: 102 ARVLVQEKVREIVRPDPEAEREVANLRLELVEQERKYRGAEEQLKSYQSELEALRRRGPQ 161

Query: 201 IDLDLVLKLQE------LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
           +++  V K          + +E ++L E+IV  T  I R   + Y L+  +  +      
Sbjct: 162 VEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDVEIYQLKQEIQSLKDTKPQ 221

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
             ++  ++ IL      Q  +++   R   S     +++
Sbjct: 222 VQTKEVVQEILQFQEDPQTKEEVQSLRARLSEEQKKQVD 260


>gi|212224221|ref|YP_002307457.1| chromosome segregation ATPase [Thermococcus onnurineus NA1]
 gi|212009178|gb|ACJ16560.1| chromosome segregation ATPase [Thermococcus onnurineus NA1]
          Length = 1188

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 77/243 (31%), Gaps = 17/243 (6%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           K+     +       +  L+ E  +    N +FE  + +  L  D+   +     +LA  
Sbjct: 673 KVEALEREKETLESAINALKLE--IKGLQNEIFELRMRRSDLSKDLQVIQREMDRLLAED 730

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             L   +  +   +   E      +G+       +G I+       +           E 
Sbjct: 731 RALKEEIGGSEKLIKALEKKIHDTKGEMAK---LRGRIERLEKKKEKLKKALENPEAREL 787

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            ++  E   E+      LS  E  L  L+  IN+       +L+ +  +L  +E + L  
Sbjct: 788 NQKIREVEHEISALREELSKVESKLENLEIRINE-------ELLPRKADL-EEEIEGLIN 839

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
            I  L   I+ + +        L  +      +  +  LK +        L  +++  R 
Sbjct: 840 RINALKSNIVENEKTIEEFEKDLEELK--KAEENVKDELKELRERR--ETLRNEIVELRA 895

Query: 283 ASS 285
              
Sbjct: 896 EKE 898


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 9/155 (5%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    L           +L + L D  V+ + H   F+    K+  G+      W C
Sbjct: 42  SAGDGDAHLVQIERGQTSAPNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPV-W-C 99

Query: 96  TSVLARTN-GLPSSLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           T + ++             L L      ++K ++     A   + +     Y  +   H+
Sbjct: 100 TKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDWGA--AELTDAQKDYAASDVLHL 157

Query: 154 QAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDL 187
              +L  E   R + E   EL +R         +L
Sbjct: 158 H--RLKDELEARLLREGRMELAQRCFDFLPTRAEL 190


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 9/155 (5%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    L           +L + L D  V+ + H   F+    K+  G+      W C
Sbjct: 42  SAGDGDAHLVQIERGQTSAPNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPV-W-C 99

Query: 96  TSVLARTN-GLPSSLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           T + ++             L L      ++K ++     A   + +     Y  +   H+
Sbjct: 100 TKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDWGA--AELTDAQKDYAASDVLHL 157

Query: 154 QAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDL 187
              +L  E   R + E   EL +R         +L
Sbjct: 158 H--RLKDELEARLLREGRMELAQRCFDFLPTRAEL 190


>gi|331085265|ref|ZP_08334351.1| hypothetical protein HMPREF0987_00654 [Lachnospiraceae bacterium
            9_1_43BFAA]
 gi|330408048|gb|EGG87538.1| hypothetical protein HMPREF0987_00654 [Lachnospiraceae bacterium
            9_1_43BFAA]
          Length = 1470

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 134/416 (32%), Gaps = 49/416 (11%)

Query: 125  MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--TRELFKRLIPLSD 182
            M  GK       K  ++   +      +++  +      ++ V    T  + + +    +
Sbjct: 732  MFAGKETAYFLEKEQLEKEIHRTEEVLNLEHKKQEQLREQQKVLTADTDGVQEYVTNYFE 791

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
                 WL +Q       +     V++ QE + ++ KKL     +L   I  S+ +   L 
Sbjct: 792  N-YAGWLEEQQ----ERKEKRAQVMEAQEQLKEKEKKLCARAAELERKIPESAAKIKKLA 846

Query: 243  MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
              +  +  ++ +      +++  +     +   +L L +         K   +SEA   D
Sbjct: 847  EEILSLQRLEDIFRKSDLVEA--NQREWKEKKAELELEKETLWRLVQAKEQEISEA---D 901

Query: 303  GRLRGTLQFYGASRTG--RWS--GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            GR+R         + G  R++       P   P  ER EE L   I A  +         
Sbjct: 902  GRIRQITAQIMERKMGWERYATYYKEEIPIQEPIPERLEEELDGAIAAFEKENKDVREKS 961

Query: 359  LASDCVRSCII--------ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                 +R  I              K++       E + LA ++ E+  I+A         
Sbjct: 962  ETLQVIREQITSYLRELRSRKADVKMLEQLY---EEQKLAEVSDEE--IEAQKEHL---- 1012

Query: 411  TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
                      +++    QR   KV EL L           +A        +  +   +  
Sbjct: 1013 ----------MEEEKLLQRCEKKVSELVLACTRFQSQADVIAGQIRERFYRIERLPIAAG 1062

Query: 471  TFE-DWEQAESHHLWMQDQYPEFAVKDKLIGTACELV-----KKAWRAKHQGVLQL 520
            T E + E+ +      + +  E   K K  G A E +     K  W A+   +  +
Sbjct: 1063 TIEIEKERQKELQQQCKRELAELFRKQKETGKAQEEIQTMIGKITWVAEEYHIKDM 1118


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 9/155 (5%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    L           +L + L D  V+ + H   F+    K+  G+      W C
Sbjct: 42  SAGDGDAHLVQIERGQTSAPNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPV-W-C 99

Query: 96  TSVLARTN-GLPSSLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           T + ++             L L      ++K ++     A   + +     Y  +   H+
Sbjct: 100 TKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDWGA--AELTDAQKDYAASDVLHL 157

Query: 154 QAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDL 187
              +L  E   R + E   EL +R         +L
Sbjct: 158 H--RLKDELEARLLREGRMELAQRCFDFLPTRAEL 190


>gi|319765134|ref|YP_004129070.1| transposase tn3 family protein [Alicycliphilus denitrificans BC]
 gi|317119821|gb|ADV02308.1| transposase Tn3 family protein [Alicycliphilus denitrificans BC]
          Length = 988

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 8/186 (4%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L+E +S   R R  L      R    +  +   +  P +  S  +L + I+ L   +
Sbjct: 178 YDALAEPLSDMHRRR--LDDLLKRRDNGKTTWLAWLRQSPVKPNSRHML-EHIERLKAWQ 234

Query: 352 TIADPLGLASDCV--RSCIIASNGKKLVVADLAGIEA-RVLAWIAG--EDWKIKAFANGE 406
            +  P G+       R   IA  G ++  ADLA  E  R  A +     +          
Sbjct: 235 ALDLPSGIERSVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALTIEGMATVTDEII 294

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++     K FN   +K  ++ +A GK +   +   G        A   G D     + V
Sbjct: 295 DLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEAKQAGRDPFAAIEAV 354

Query: 467 KSTSTF 472
            S   F
Sbjct: 355 MSWDAF 360


>gi|182676846|ref|YP_001830993.1| HlyD family type I secretion membrane fusion protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182636476|gb|ACB97249.1| type I secretion membrane fusion protein, HlyD family [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 481

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 2/196 (1%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +EAT+E   R +PL   E ++    Q   +R  R DL L     E +  +R++ + +  +
Sbjct: 139 LEATKEHLLRPLPLVRWEEEIPRPIQEREERVLRGDLALFAAQIEGLVAQRRQKEAEQER 198

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           LT  I         L   + +   +  V  S GT  ++L      Q    ++  +     
Sbjct: 199 LTKTIAAQEALLATLDQRVAMREAL--VQHSAGTRANLLDAIESRQYQDVILKTQQGQKA 256

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
             +  L  L + ++              +   R +    Q     R +    +LT  I  
Sbjct: 257 ENVASLAVLIQDIAKSYETFTAENSQKLADAERQADENAQRLVKARVKLGHMLLTSPIDG 316

Query: 347 LNRGETIADPLGLASD 362
             +  ++  P  + + 
Sbjct: 317 TVQALSVTTPGQVIAS 332


>gi|282901859|ref|ZP_06309765.1| Type-1 restriction enzyme R protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193255|gb|EFA68246.1| Type-1 restriction enzyme R protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 988

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A   + WQ F      D +A  +L KRL  +      L +L + I   G R  L      
Sbjct: 47  ATQPKEWQKFKTQYGDDAKA--KLLKRLAEVIKTRGTLEVLRKGIKANGCRFKLAYFKPA 104

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
             L  + +K    +   +   +  S  +  +L + LFL  G+ L       LK+     N
Sbjct: 105 SGLNEETQKLYQANFFSIARQLHYSRTRAKSLDLALFL-NGLPLFT---AELKNPFKGQN 160

Query: 270 ITQLAKDLILNR 281
           +    K   ++R
Sbjct: 161 VEHAVKQYRIDR 172


>gi|297467738|ref|XP_002705285.1| PREDICTED: spectrin repeat containing, nuclear envelope 1, partial
            [Bos taurus]
          Length = 7197

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 12/178 (6%)

Query: 126  EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
             EG+ L A   K  + S     T+AN  + +Q F + C +D +A ++    L    D  R
Sbjct: 867  REGQTLYAHLSKQIVSSIQEQVTKAN--EEFQAFLKQCLKDRQALQDCALELGSFEDQHR 924

Query: 186  DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRM 243
             L L    + +R    +L    +       E  K++  + +L      +    Q   L  
Sbjct: 925  KLNLWIHEMEERLSTENLGESKQHIPEKKNEVHKIEMFLGELLAARESLDKLSQRGQLLS 984

Query: 244  YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                  G      S    + + S+ N+ ++ K+    +L S   A+ +   L EA+ S
Sbjct: 985  ----EEGHGAGKESRLCSQLLTSYQNLLRMTKE----KLRSCQVALQEHEALEEALQS 1034


>gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
 gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
          Length = 206

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 9/155 (5%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           +  D    +           +L     D +   + H + F+  + K+ L I +    W C
Sbjct: 44  SSGDGSADVVQIERGQLAAPNLQALFEDASKPKIFHFARFDVAILKEYLDISVSPV-W-C 101

Query: 96  TSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T + ++     +    LK+ C  L     L+K ++     A   K +     Y  +   H
Sbjct: 102 TKIASKLVRTYTDRHGLKDICREL-IGVDLSKQQQSSDWAAE--KLTDAQLAYAASDVLH 158

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
           +   +   E+     E T E+ ++          L
Sbjct: 159 LHKLKERLEFMLEREERT-EIAQKCFDFLPTRAQL 192


>gi|195134284|ref|XP_002011567.1| GI11100 [Drosophila mojavensis]
 gi|193906690|gb|EDW05557.1| GI11100 [Drosophila mojavensis]
          Length = 1365

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 97/299 (32%), Gaps = 34/299 (11%)

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             +  T++ +   LI    K   D           +   Q   +   + VE   EL K+ 
Sbjct: 460 LEQQDTRLRQQLDLIT---KREADLQRIASEYEMDLTLRQHNYKVAMQKVEVEIELRKKA 516

Query: 178 IPL-------SDGERDLWLLDQTINDRGYRI-----DLDLVLKLQELIAQERKKLDEDI- 224
             L        + E+   + D  IN++   +     D++L  K +    Q+ KK + ++ 
Sbjct: 517 EALIVETQRKLENEQKTRMRDLNINEKVLTLEKQLHDMELSFKNETEQTQKLKKQNAELG 576

Query: 225 ------VKLTDGIIRSSRQTYALRMYLFLITG-IDLVDMSEGTLKSILSHSNIT-----Q 272
                  +    ++  ++     +  L      +      E TL+S L   +       Q
Sbjct: 577 FTLKTHEEKVRDLVELNKTLQKEKEELDQENADLQAQVAQEKTLRSQLKVVHKEAENKMQ 636

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              + +   L     A      L E +S   R   +L F   +  GR+     + +    
Sbjct: 637 TLTNDLERSLQREQKAQEDNRALLEKISELERTHASLDFELKAAQGRYQQ---EVRAHQE 693

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK---LVVADLAGIEARV 388
            E+S  +  +           +      S  +++   +   ++   ++  D   I+ R+
Sbjct: 694 TEKSRLVSREEANLQEVKALQSKLNEEKSARIKADQNSQEKERQLSMLSVDYRQIQLRL 752


>gi|158301300|ref|XP_321013.4| AGAP002038-PA [Anopheles gambiae str. PEST]
 gi|157012404|gb|EAA01251.4| AGAP002038-PA [Anopheles gambiae str. PEST]
          Length = 1062

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 77/202 (38%), Gaps = 9/202 (4%)

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ--ER 217
           G+  ++D +  R L   L    D   ++ L+ + + +R   + +D++  +     +  + 
Sbjct: 186 GDAVEKDADLYRGLLGVLAEKGDI-AEMKLVGEMMKERNLPLTVDVINLMIRGYGRAGDL 244

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNITQLAK 275
             +   +  ++   + ++ +TY   M  FL  G+   ++ M       +     +  LA 
Sbjct: 245 DGVQMVLETMSASSVSANGETYGELMIAFLEDGMGDRVLKMVREKGSQLQERHVLELLAL 304

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY--GASRTGRWSGCVFQPQNLPRQ 333
            L          A+LKL  L E ++ DGR+   L+    G  R G   G +    +LP  
Sbjct: 305 ALGAKVQPELVRALLKL--LPEELTGDGRIHPVLRNVLSGLVRAGHLDGMMALLDDLPAP 362

Query: 334 ERSEEILTQTIQALNRGETIAD 355
           +      T         E + +
Sbjct: 363 QFRANENTDGYGTFLMVEMLRN 384


>gi|330805398|ref|XP_003290670.1| hypothetical protein DICPUDRAFT_155206 [Dictyostelium purpureum]
 gi|325079200|gb|EGC32812.1| hypothetical protein DICPUDRAFT_155206 [Dictyostelium purpureum]
          Length = 1439

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 7/152 (4%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           F +  +   +  ++  ++ K  + FE+ ++    +     +         ++G   ++  
Sbjct: 62  FTSQDAEANIGKEESEEDFKLRNYFENSQRMALENGGKPKKMGISVRNLTVVGRGADVSV 121

Query: 508 -------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                    W        +  K+ T G    +    +   +    +  L          +
Sbjct: 122 ISDMSSPFVWFIDLFNPKKWSKESTLGSTFDILHDVTTFCKDGQMLLVLGRPGAGCSTFL 181

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
            L S++R  Y D+KGD +Y    + +  R + 
Sbjct: 182 RLVSNQRGSYVDIKGDITYGGIQSKEWKRYKG 213


>gi|291414655|ref|XP_002723579.1| PREDICTED: TRIO and F-actin binding protein [Oryctolagus cuniculus]
          Length = 2060

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 8/207 (3%)

Query: 138  GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--ERDLWLLDQTIN 195
             +  +PP     A     + +  E C+R +       ++++       ER+L  L Q   
Sbjct: 1784 EAPQNPPRSQEDAPIPPGY-ISQEACERSLAQMESSHQQVMEELQRHHERELQRLQQEKE 1842

Query: 196  DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
                         ++ +    +++L  ++ K T  + +                  +L  
Sbjct: 1843 WLLAEETAATASAIEAMKKAYQEELSRELSK-TRCLQQGPDGLRKQHQSDVEALKRELQV 1901

Query: 256  MSEGTLKSILSHSNITQLAKDLI--LNRLASSGSAILKLN-TLSEAVSSD-GRLRGTLQF 311
            +SE   +  L    +T+ A++    L R    G  +L+ N  L   +S +  RLRG +  
Sbjct: 1902 LSEQYSQKCLEIGALTRQAEEREHTLRRCQQEGQELLRHNQELHSRLSEEIDRLRGFIAS 1961

Query: 312  YGASRTGRWSGCVFQPQNLPRQERSEE 338
             GA  +GR      + + L R +  E 
Sbjct: 1962 QGAGGSGRNERSSCELEVLLRVKEKEL 1988


>gi|4580771|gb|AAD24500.1|AF083813_1 mitotic checkpoint protein isoform MAD1b [Mus musculus]
 gi|148687178|gb|EDL19125.1| mitotic arrest deficient 1-like 1, isoform CRA_a [Mus musculus]
          Length = 514

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 90/289 (31%), Gaps = 15/289 (5%)

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIAR----FCKGSIDSPPYDCTRANHVQA---WQLF 159
           S++              +++E   L  R      +   +       RA H Q     +  
Sbjct: 172 SAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQK 231

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLL-DQTINDRGYRIDLDLVLKLQELIAQERK 218
               ++D    + +   L+ +   ER+L  L ++  + R  +    L+ +  E + ++  
Sbjct: 232 LCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLS 291

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           + ++    L D  +   +    L+ +  L   + L   +   L   +      +L     
Sbjct: 292 RQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEK 351

Query: 279 LNRLASSGSAILKL-NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            N + SS   + K+   L + V                R  R +      +   R     
Sbjct: 352 NNSITSSARGLEKVQQQLQDEVRQAN------AQLLEERKKRETHEALARRLQKRNALLT 405

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           +        L   ++       ++   +    A +  + V A  + +EA
Sbjct: 406 KERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEMEA 454


>gi|145479721|ref|XP_001425883.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392955|emb|CAK58485.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1068

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 73/220 (33%), Gaps = 25/220 (11%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
            C  +     G+   L+         + +   +   A +                    +
Sbjct: 741 KCAMLSTHIEGMKYKLEKMENVDELKKIIQDQQAQLAEMDALKLEIESLNDRIAELEKEL 800

Query: 154 QAWQLFGEYCKRDVEATRELFKRL-----IPLSDGER----------DLWLLDQTINDRG 198
           + W+   E   +  +    + +++     +  S+ ER           L  +DQ +ND  
Sbjct: 801 KLWKQKHEQLDQQYQQLLHVKEQMENKLAMLSSEIERLKGKLINKTKKLMKMDQELNDLH 860

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            ++      +    +  +   L+  + +LTD     S +   L+  +  I G+ +   ++
Sbjct: 861 NQL------EDINELKTQLSSLENQLQQLTDENQNKSAEITQLKQQIAEIEGLLV---NQ 911

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAI-LKLNTLSE 297
             L++ +        +KD I+ +     + +  K+  L +
Sbjct: 912 EDLQNQIKKLEKESQSKDEIIEQFKQKITQLESKIAELED 951


>gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
 gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
          Length = 386

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           + D   +L D  E     S L + + D  V+ + H++  +  + ++  G D   K    T
Sbjct: 44  YPDGHCELIDAPEIED-WSPLAELMSDPNVVKILHDAQQDLTILRRVCGSD--PKTIFDT 100

Query: 97  SVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            + A   GL S  SL++    L     L K E     +AR    +      D  R +   
Sbjct: 101 QLTAGFIGLSSTISLRDILKTL-LKVRLAKTETQSDWVARPLTEAQIKYAEDDVRDSVRL 159

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             Q+       D    RE         + E   +       +R    ++  V     L  
Sbjct: 160 MEQILKRA---DALGRRE-------WIENEMTYYEDAAIYEERDPDTEMPRVRGSGALTH 209

Query: 215 QERKKLDE 222
           Q+R  L  
Sbjct: 210 QQRNVLRA 217


>gi|323344304|ref|ZP_08084530.1| protein of hypothetical function DUF195 [Prevotella oralis ATCC
           33269]
 gi|323095033|gb|EFZ37608.1| protein of hypothetical function DUF195 [Prevotella oralis ATCC
           33269]
          Length = 456

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 61/385 (15%), Positives = 136/385 (35%), Gaps = 31/385 (8%)

Query: 167 VEATRELFKRLIPL-SDGERDLWLL--DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           V   R+L ++L  L  D ER    L  +Q  N +   +  +   +  + + ++   L   
Sbjct: 57  VAEKRDLQEQLTQLKIDLERANTQLQAEQEHNSKEAEMRKEQFEQQLKTVQEQFSNLATR 116

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID-LVDMSEGTLKSILSHSN-ITQLAKDLILNR 281
           ++  T   ++ S       +   L   I+ L  + + T      H+  ++Q  K++    
Sbjct: 117 VLDQTADKLKHSNSESMESITRPLKQNIEQLHQVIQTTNSETTKHTASLSQQLKEMAEQT 176

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                +A      L+  +    + +G     G  R           Q +      +  + 
Sbjct: 177 QKIDATATR----LTNVIRGGNKAQGNW---GERRLAELLESQGLRQGI------DYDMQ 223

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA-GIEARVLAWIAGEDWKIK 400
           QTI        + D  G     +   I+     + V+ D    I+A        ++   +
Sbjct: 224 QTITDDKGNAVLNDESG--RRMIPDVILHYPNNEDVIVDSKVSIDAYYNYVNTEDEGLKR 281

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDL 459
            +A  ED+  +   +AF       SK  +   K ++  + Y       +  +A+   +  
Sbjct: 282 KYA--EDLVRSIRTQAFGLAKKDYSKYVQKPRKAIDFVIMYVPFEGALQLALATEPKIWG 339

Query: 460 QQFSQNVKSTST------FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
           + F + V  TS        +  + A   +   ++Q   F + ++L+    + +K+  + K
Sbjct: 340 EAFDRQVLITSQQNLIAILKMIQIAWRQYAQTENQKKVFGMAEELLKRVGDFIKRFDKVK 399

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSI 538
            + +  L +D  + ++       SI
Sbjct: 400 -KDIENLHRDYDDAYSKAYTGRQSI 423


>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
 gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
          Length = 383

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +D E V L D T  +   S     L D  V+ V H    +  +F          +  + T
Sbjct: 55  YDGERVSLIDPTTITDF-SPFTALLADINVIKVLHACYEDLEVFSHYFQQ--LPEPIMDT 111

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            V+A     P S   A L  ++     ++++G +      +   +              W
Sbjct: 112 QVMAGFLAFPHSTGLASLIRHYLA--LEIDKGASRTDWLARPLSEKQLQYAA----ADVW 165

Query: 157 QLFGEYCKRDVE 168
            L   Y K  VE
Sbjct: 166 YLLPLYEKMAVE 177


>gi|291228452|ref|XP_002734195.1| PREDICTED: chromosome 20 open reading frame 23-like [Saccoglossus
            kowalevskii]
          Length = 1409

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%)

Query: 109  LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            L+      + S    + +E   L  RF K        +   +   +  Q F     +++E
Sbjct: 1090 LREMSNLYDESRQRAQDKESHQLEERFKKLHELEEQTNRAESELQRKRQEFEIQRTKEIE 1149

Query: 169  ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +    +L  + D ER   L+++ +  R +   +    +L     +E+   +++I +L 
Sbjct: 1150 RIKLEKYKLQEMEDQERINELIEERVKKRLFEEKVQREKQLLAEKEKEKLDREKEIQRLK 1209


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDE------TVMCVAHNSLFERILFK-KTLGI-DIP 89
           D  PV +   T +    S     + DE        + VAHN+ F+  +   + L I    
Sbjct: 40  DPGPVHIHGLTRERLAGSPTFAAVVDELSELLAGRVLVAHNAAFDWRMLAGEALRIGRTL 99

Query: 90  SKRWI-CTSVLARTNG 104
              W  CT  LA   G
Sbjct: 100 PVEWRLCTLTLASRLG 115


>gi|163847799|ref|YP_001635843.1| SMC domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525668|ref|YP_002570139.1| SMC domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163669088|gb|ABY35454.1| SMC domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449547|gb|ACM53813.1| SMC domain protein [Chloroflexus sp. Y-400-fl]
          Length = 1032

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 30/249 (12%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL---IAQER 217
            Y   D+EATR L + L      ERDL L +Q      Y  DL L  + Q+L     +ER
Sbjct: 730 NYRPEDLEATRALVRSLTRWEQAERDLLLAEQR-----YATDLKLREQTQQLCDHAERER 784

Query: 218 KKLDEDIVKLTDGI---------IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           + L  +   L   +         +   +Q  +         G DL +      ++  + +
Sbjct: 785 QTLHAEAEALAHQLRVLPTVQATVNQVKQQLSANEQALQAAGRDLAEKQAYYRQAESAAA 844

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  L       R  S  +A+     L+EA    G ++  L      +    +  +    
Sbjct: 845 EVESLQTQ---ERQLSERTAL--FAELAEAFGKKG-VQAMLIETAIPQLEDEANRLLARL 898

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA-- 386
              +     E+   T +                    +        ++  A    I    
Sbjct: 899 TDGQMHLRFEMQRDTKKGDTVETLEVRIADALGTRDYAAFSGGEAMRVNFA----IRMAL 954

Query: 387 -RVLAWIAG 394
            R+LA  AG
Sbjct: 955 SRLLAHRAG 963


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.309    0.129    0.359 

Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,141,561,278
Number of Sequences: 13984884
Number of extensions: 452325516
Number of successful extensions: 1177130
Number of sequences better than 10.0: 4490
Number of HSP's better than 10.0 without gapping: 6063
Number of HSP's successfully gapped in prelim test: 1101
Number of HSP's that attempted gapping in prelim test: 1145374
Number of HSP's gapped (non-prelim): 13292
length of query: 675
length of database: 4,792,584,752
effective HSP length: 146
effective length of query: 529
effective length of database: 2,750,791,688
effective search space: 1455168802952
effective search space used: 1455168802952
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 85 (37.4 bits)